The build system now passes compiler directives based on the mode being build. By default data is stored in the source root (and this is encoded into the compiled binary). However, if building in user mode then data is assumed to be at the meson install prefix data directory
In order to constrain the central slope we find all the elements connected to the central vertex. The slope will be approximated over these using the finite difference method
Instead of treating the polytrope as a free boundary problem I have defined an interpolating polynominal, accurate to within 0.01 percent over n=[0,5) which is used to set the size of the domain for a given n
epx10 is a extension to the c++ standard library from glibc which is not in libc. To provide support for llvm compilers alonw with gcc I have changed all calls to exp10(x) to pow(10, x).
gcc versions 11 and before did not require this header to be manually specified, above that it does. As we move towrds a standardized compiler version I have brought opatIO in line with more modern gcc expectations
Aaron Dotter implimented a C++ version of Frank Timmes' fortran code helmholtz.f90. I have taken that and refactored it to work in the 4DSEE code style. This has mostly involved some light moving of stuff around. The biggest change is removing all globals, and reorienting memory to be heap allocated and contiguous. This is because there was too much memory being stack allocated.
The NewtonSolver has been subclassed to try to auto enforce the zero boundary central condition by modifying the residual vector and the gradient matrix. This is a work in progress
BREAKING CHANGE:
glVisView function now accepts a keyset to send and has an overloaded version which takes a vector and finite element space instead of just a grid function and mesh
Rescaling a mesh by a linear transformation is a useful option so that we can start with a single "base" mesh and then rescale it to the dimensions needed for our problem. This commit adds the LinearRescale option too meshIO so that a unit sphere can be turned into a sphere of arbitrary radius (as an example).
