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docs(docs): rebuilt docs

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Emily Boudreaux
2025-06-16 12:33:11 -04:00
parent 556b5737be
commit 1a1db48ddd
37 changed files with 987 additions and 589 deletions
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33
docs/html/annotated.html
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@@ -117,7 +117,7 @@ $(function(){initNavTree('annotated.html',''); initResizable(true); });
<tr id="row_0_2_0_0_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_e_o_s.html" target="_self">EOS</a></td><td class="desc">Structure to hold the output parameters and derivatives of the <a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_e_o_s.html" title="Structure to hold the output parameters and derivatives of the EOS calculation.">EOS</a> calculation </td></tr>
<tr id="row_0_2_0_1_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_e_o_s_input.html" target="_self">EOSInput</a></td><td class="desc">Structure to hold the input parameters for the <a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_e_o_s.html" title="Structure to hold the output parameters and derivatives of the EOS calculation.">EOS</a> calculation </td></tr>
<tr id="row_0_2_0_2_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_h_e_l_m_table.html" target="_self">HELMTable</a></td><td class="desc">Structure to hold the Helmholtz <a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_e_o_s.html" title="Structure to hold the output parameters and derivatives of the EOS calculation.">EOS</a> table data </td></tr>
<tr id="row_0_2_1_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1eos_1_1_eos_i_o.html" target="_self">EosIO</a></td><td class="desc">Handles the input/output operations for EOS tables </td></tr>
<tr id="row_0_2_1_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1eos_1_1_e_o_sio.html" target="_self">EOSio</a></td><td class="desc">Handles the input/output operations for EOS tables </td></tr>
<tr id="row_0_3_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_3_" class="arrow" onclick="dynsection.toggleFolder('0_3_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceserif_1_1mesh.html" target="_self">mesh</a></td><td class="desc"></td></tr>
<tr id="row_0_3_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1mesh_1_1_mesh_i_o.html" target="_self">MeshIO</a></td><td class="desc">Class for handling mesh input/output operations </td></tr>
<tr id="row_0_4_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_4_" class="arrow" onclick="dynsection.toggleFolder('0_4_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceserif_1_1network.html" target="_self">network</a></td><td class="desc"></td></tr>
@@ -143,19 +143,24 @@ $(function(){initNavTree('annotated.html',''); initResizable(true); });
<tr id="row_0_5_7_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1polytrope_1_1solver_bundle.html" target="_self">solverBundle</a></td><td class="desc">Structure to manage the lifetime of MFEM solver objects </td></tr>
<tr id="row_0_6_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_6_" class="arrow" onclick="dynsection.toggleFolder('0_6_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceserif_1_1probe.html" target="_self">probe</a></td><td class="desc">The Probe namespace contains utility functions for debugging and logging </td></tr>
<tr id="row_0_6_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1probe_1_1_log_manager.html" target="_self">LogManager</a></td><td class="desc">Class to manage logging operations </td></tr>
<tr id="row_0_7_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_7_" class="arrow" onclick="dynsection.toggleFolder('0_7_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceserif_1_1resource.html" target="_self">resource</a></td><td class="desc"></td></tr>
<tr id="row_0_7_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1resource_1_1_resource_manager.html" target="_self">ResourceManager</a></td><td class="desc"></td></tr>
<tr id="row_1_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classapprox8_test.html" target="_self">approx8Test</a></td><td class="desc"></td></tr>
<tr id="row_2_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classcomposition_test.html" target="_self">compositionTest</a></td><td class="desc">Test suite for the composition class </td></tr>
<tr id="row_3_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classconfig_test.html" target="_self">configTest</a></td><td class="desc">Test suite for the Config class </td></tr>
<tr id="row_4_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classconfig_test_private_accessor.html" target="_self">configTestPrivateAccessor</a></td><td class="desc"></td></tr>
<tr id="row_5_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classconst_test.html" target="_self">constTest</a></td><td class="desc">Test suite for the const class </td></tr>
<tr id="row_6_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classeos_test.html" target="_self">eosTest</a></td><td class="desc">Test suite for the const class </td></tr>
<tr id="row_7_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classmesh_i_o_test.html" target="_self">meshIOTest</a></td><td class="desc"></td></tr>
<tr id="row_8_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classpoly_test.html" target="_self">polyTest</a></td><td class="desc"></td></tr>
<tr id="row_9_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classprobe_test.html" target="_self">probeTest</a></td><td class="desc"></td></tr>
<tr id="row_10_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_resource_manager.html" target="_self">ResourceManager</a></td><td class="desc">Manages resources within the application </td></tr>
<tr id="row_11_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classresource_manager_test.html" target="_self">resourceManagerTest</a></td><td class="desc">Test suite for the resourceManager class </td></tr>
<tr id="row_0_7_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_7_" class="arrow" onclick="dynsection.toggleFolder('0_7_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceserif_1_1pybind.html" target="_self">pybind</a></td><td class="desc">Contains pybind11 helper classes and trampoline classes for interfacing C++ with Python </td></tr>
<tr id="row_0_7_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1pybind_1_1_py_coefficient.html" target="_self">PyCoefficient</a></td><td class="desc">Trampoline class for mfem::Coefficient </td></tr>
<tr id="row_0_7_1_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1pybind_1_1_py_matrix.html" target="_self">PyMatrix</a></td><td class="desc">A trampoline class for mfem::Matrix </td></tr>
<tr id="row_0_7_2_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1pybind_1_1_py_operator.html" target="_self">PyOperator</a></td><td class="desc">Trampoline class for mfem::Operator </td></tr>
<tr id="row_0_7_3_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1pybind_1_1_py_vector_coefficient.html" target="_self">PyVectorCoefficient</a></td><td class="desc">Trampoline class for mfem::VectorCoefficient </td></tr>
<tr id="row_0_8_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_8_" class="arrow" onclick="dynsection.toggleFolder('0_8_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceserif_1_1resource.html" target="_self">resource</a></td><td class="desc"></td></tr>
<tr id="row_0_8_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1resource_1_1_resource_manager.html" target="_self">ResourceManager</a></td><td class="desc"></td></tr>
<tr id="row_1_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classapprox8_test.html" target="_self">approx8Test</a></td><td class="desc"></td></tr>
<tr id="row_2_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classcomposition_test.html" target="_self">compositionTest</a></td><td class="desc">Test suite for the composition class </td></tr>
<tr id="row_3_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classconfig_test.html" target="_self">configTest</a></td><td class="desc">Test suite for the Config class </td></tr>
<tr id="row_4_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classconfig_test_private_accessor.html" target="_self">configTestPrivateAccessor</a></td><td class="desc"></td></tr>
<tr id="row_5_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classconst_test.html" target="_self">constTest</a></td><td class="desc">Test suite for the const class </td></tr>
<tr id="row_6_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classeos_test.html" target="_self">eosTest</a></td><td class="desc">Test suite for the const class </td></tr>
<tr id="row_7_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classmesh_i_o_test.html" target="_self">meshIOTest</a></td><td class="desc"></td></tr>
<tr id="row_8_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classpoly_test.html" target="_self">polyTest</a></td><td class="desc"></td></tr>
<tr id="row_9_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classprobe_test.html" target="_self">probeTest</a></td><td class="desc"></td></tr>
<tr id="row_10_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_resource_manager.html" target="_self">ResourceManager</a></td><td class="desc">Manages resources within the application </td></tr>
<tr id="row_11_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classresource_manager_test.html" target="_self">resourceManagerTest</a></td><td class="desc">Test suite for the resourceManager class </td></tr>
</table>
</div><!-- directory -->
</div><!-- contents -->

8
docs/html/annotated_dup.js
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@@ -16,7 +16,7 @@ var annotated_dup =
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] ],
[ "EosIO", "classserif_1_1eos_1_1_eos_i_o.html", "classserif_1_1eos_1_1_eos_i_o" ]
[ "EOSio", "classserif_1_1eos_1_1_e_o_sio.html", "classserif_1_1eos_1_1_e_o_sio" ]
] ],
[ "mesh", "namespaceserif_1_1mesh.html", [
[ "MeshIO", "classserif_1_1mesh_1_1_mesh_i_o.html", "classserif_1_1mesh_1_1_mesh_i_o" ]
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[ "probe", "namespaceserif_1_1probe.html", [
[ "LogManager", "classserif_1_1probe_1_1_log_manager.html", "classserif_1_1probe_1_1_log_manager" ]
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[ "PyCoefficient", "classserif_1_1pybind_1_1_py_coefficient.html", "classserif_1_1pybind_1_1_py_coefficient" ],
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[ "PyOperator", "classserif_1_1pybind_1_1_py_operator.html", "classserif_1_1pybind_1_1_py_operator" ],
[ "PyVectorCoefficient", "classserif_1_1pybind_1_1_py_vector_coefficient.html", "classserif_1_1pybind_1_1_py_vector_coefficient" ]
] ],
[ "resource", "namespaceserif_1_1resource.html", [
[ "ResourceManager", "classserif_1_1resource_1_1_resource_manager.html", "classserif_1_1resource_1_1_resource_manager" ]
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docs/html/classes.html
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<dt class="alphachar"><a id="letter_R" name="letter_R">R</a></dt>
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2
docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html
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1
docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.js
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<tr id="row_2_9_0_0_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><a href="load_mesh_8py_source.html"><span class="icondoc"></span></a><a class="el" href="load_mesh_8py.html" target="_self">loadMesh.py</a></td><td class="desc"></td></tr>
<tr id="row_2_9_0_1_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><a href="run_polytrope_8py_source.html"><span class="icondoc"></span></a><a class="el" href="run_polytrope_8py.html" target="_self">runPolytrope.py</a></td><td class="desc"></td></tr>
<tr id="row_2_10_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_2_10_" class="arrow" onclick="dynsection.toggleFolder('2_10_')">&#9660;</span><span id="img_2_10_" class="iconfopen" onclick="dynsection.toggleFolder('2_10_')">&#160;</span><a class="el" href="dir_f32aa75261448ee6e688669e6b5542e9.html" target="_self">resource</a></td><td class="desc"></td></tr>
<tr id="row_2_10_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><a href="resource_manager_test_8cpp_source.html"><span class="icondoc"></span></a><a class="el" href="resource_manager_test_8cpp.html" target="_self">resourceManagerTest.cpp</a></td><td class="desc"></td></tr>
</table>
</div><!-- directory -->
</div><!-- contents -->

3
docs/html/functions.html
View File

@@ -103,9 +103,12 @@ $(function(){initNavTree('functions.html',''); initResizable(true); });
<h3><a id="index_a" name="index_a"></a>- a -</h3><ul>
<li>abar&#160;:&#160;<a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_e_o_s_input.html#a4974e4e163e9ff60aa1c4d4a1ebd426c">serif::eos::helmholtz::EOSInput</a></li>
<li>AddMult()&#160;:&#160;<a class="el" href="classserif_1_1pybind_1_1_py_matrix.html#a6c235ad5686a4191159324142d0e7d67">serif::pybind::PyMatrix</a>, <a class="el" href="classserif_1_1pybind_1_1_py_operator.html#a60e7a681b1917e1a656d957f55969cf1">serif::pybind::PyOperator</a></li>
<li>AddMultTranspose()&#160;:&#160;<a class="el" href="classserif_1_1pybind_1_1_py_matrix.html#aed2d3fec0fe6a3fe05c4f227c803cddd">serif::pybind::PyMatrix</a>, <a class="el" href="classserif_1_1pybind_1_1_py_operator.html#acd6addc130ae6284f2646158b360affc">serif::pybind::PyOperator</a></li>
<li>aion&#160;:&#160;<a class="el" href="structserif_1_1network_1_1approx8_1_1_net.html#ae4d6bfb7bee80e80dc7947648d755e6c">serif::network::approx8::Net</a></li>
<li>assembleAndFinalizeForm()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a3d7ed2ad970e24927cb13ea2e4ae572f">serif::polytrope::PolySolver</a></li>
<li>assembleBlockSystem()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a8b6283e2d865e2941d314e6155c558b8">serif::polytrope::PolySolver</a></li>
<li>AssembleDiagonal()&#160;:&#160;<a class="el" href="classserif_1_1pybind_1_1_py_matrix.html#ab56c65919a221167f460b0567ccac63d">serif::pybind::PyMatrix</a>, <a class="el" href="classserif_1_1pybind_1_1_py_operator.html#a4e1ca3d27b3d613d8c7a8160872278cb">serif::pybind::PyOperator</a></li>
<li>AssembleElementGrad()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1poly_m_f_e_m_utils_1_1_nonlinear_power_integrator.html#a3ff176719caad168f9e72011a9468370">serif::polytrope::polyMFEMUtils::NonlinearPowerIntegrator</a></li>
<li>AssembleElementVector()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1poly_m_f_e_m_utils_1_1_nonlinear_power_integrator.html#a370aeb5312191abc5bf8cb07d5993d87">serif::polytrope::polyMFEMUtils::NonlinearPowerIntegrator</a></li>
</ul>

36
docs/html/functions_func.html
View File

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<h3><a id="index_a" name="index_a"></a>- a -</h3><ul>
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<li>AddMultTranspose()&#160;:&#160;<a class="el" href="classserif_1_1pybind_1_1_py_matrix.html#aed2d3fec0fe6a3fe05c4f227c803cddd">serif::pybind::PyMatrix</a>, <a class="el" href="classserif_1_1pybind_1_1_py_operator.html#acd6addc130ae6284f2646158b360affc">serif::pybind::PyOperator</a></li>
<li>assembleAndFinalizeForm()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a3d7ed2ad970e24927cb13ea2e4ae572f">serif::polytrope::PolySolver</a></li>
<li>assembleBlockSystem()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a8b6283e2d865e2941d314e6155c558b8">serif::polytrope::PolySolver</a></li>
<li>AssembleDiagonal()&#160;:&#160;<a class="el" href="classserif_1_1pybind_1_1_py_matrix.html#ab56c65919a221167f460b0567ccac63d">serif::pybind::PyMatrix</a>, <a class="el" href="classserif_1_1pybind_1_1_py_operator.html#a4e1ca3d27b3d613d8c7a8160872278cb">serif::pybind::PyOperator</a></li>
<li>AssembleElementGrad()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1poly_m_f_e_m_utils_1_1_nonlinear_power_integrator.html#a3ff176719caad168f9e72011a9468370">serif::polytrope::polyMFEMUtils::NonlinearPowerIntegrator</a></li>
<li>AssembleElementVector()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1poly_m_f_e_m_utils_1_1_nonlinear_power_integrator.html#a370aeb5312191abc5bf8cb07d5993d87">serif::polytrope::polyMFEMUtils::NonlinearPowerIntegrator</a></li>
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<h3><a id="index_e" name="index_e"></a>- e -</h3><ul>
<li>EosIO()&#160;:&#160;<a class="el" href="classserif_1_1eos_1_1_eos_i_o.html#afd7bfc464ba6dfdbc15750f500656e0a">serif::eos::EosIO</a></li>
<li>Elem()&#160;:&#160;<a class="el" href="classserif_1_1pybind_1_1_py_matrix.html#ab7d890df3fa542cfb419ef0057ff8065">serif::pybind::PyMatrix</a></li>
<li>EOSio()&#160;:&#160;<a class="el" href="classserif_1_1eos_1_1_e_o_sio.html#ab58e6602cf9f608ef15e32abe8f28594">serif::eos::EOSio</a></li>
<li>Eval()&#160;:&#160;<a class="el" href="classserif_1_1pybind_1_1_py_coefficient.html#a8a72dfd83353cb05ef35acea11fdd322">serif::pybind::PyCoefficient</a>, <a class="el" href="classserif_1_1pybind_1_1_py_vector_coefficient.html#ae8fab993057eaa4bac320ba94b62fe8a">serif::pybind::PyVectorCoefficient</a></li>
<li>evaluate()&#160;:&#160;<a class="el" href="classserif_1_1network_1_1approx8_1_1_approx8_network.html#a1b592b4dd76a2a0a62dbc21a66869cef">serif::network::approx8::Approx8Network</a>, <a class="el" href="classserif_1_1network_1_1_network.html#a1fbbd504511f4e20074f47063d99db59">serif::network::Network</a></li>
</ul>
<h3><a id="index_f" name="index_f"></a>- f -</h3><ul>
<li>Finalize()&#160;:&#160;<a class="el" href="classserif_1_1pybind_1_1_py_matrix.html#a4338aeb12c0dc3942cb35cd6c3149b10">serif::pybind::PyMatrix</a></li>
<li>finalize()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a8308d68b06dd878c88b2b811583b506a">serif::composition::Composition</a>, <a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a25e32d09fd447b067a6d4eafbce7b855">serif::polytrope::PolytropeOperator</a></li>
<li>finalizeMassFracMode()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a452328138249daff620a1456492053bf">serif::composition::Composition</a></li>
<li>finalizeNumberFracMode()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a93ef21072ce2c887dee25a98ef62f392">serif::composition::Composition</a></li>
@@ -155,12 +161,13 @@ $(function(){initNavTree('functions_func.html',''); initResizable(true); });
<li>get_preconditioner()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#ac323a14e8f4bf5afcd85a0b802ca72cf">serif::polytrope::PolytropeOperator</a></li>
<li>get_reduced_block_offsets()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#aa3ac1b125083008e5a465caa6db4bd04">serif::polytrope::PolytropeOperator</a></li>
<li>get_reduced_system_size()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a94e582b0aeac97aff16b63db0a8137b2">serif::polytrope::PolytropeOperator</a></li>
<li>getAvaliableResources()&#160;:&#160;<a class="el" href="classserif_1_1resource_1_1_resource_manager.html#a77243baf9aa96d5f3c1635f8a34b48b5">serif::resource::ResourceManager</a></li>
<li>getAvailableResources()&#160;:&#160;<a class="el" href="classserif_1_1resource_1_1_resource_manager.html#a6d928de466e0ea9e08d21ff6fb68c3ec">serif::resource::ResourceManager</a></li>
<li>getComposition()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a7fb0a21428bd55ce156f17d19d10a557">serif::composition::Composition</a></li>
<li>GetDofCoordinates()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a3d70b1098484fa1b0b384d291610d07c">serif::polytrope::PolySolver</a></li>
<li>getEssentialTrueDof()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a26e30f4424c746dbda63b387674dbf26">serif::polytrope::PolySolver</a></li>
<li>getFormat()&#160;:&#160;<a class="el" href="classserif_1_1eos_1_1_eos_i_o.html#a58c3fd6063593fa14eaad85340b82d3d">serif::eos::EosIO</a></li>
<li>GetGradient()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a55d3e6dd6037eed30f3ebf52ca2d2a80">serif::polytrope::PolytropeOperator</a></li>
<li>getFilename()&#160;:&#160;<a class="el" href="classserif_1_1eos_1_1_e_o_sio.html#aff1a5f7d429115803c9ecc23247520ed">serif::eos::EOSio</a></li>
<li>getFormat()&#160;:&#160;<a class="el" href="classserif_1_1eos_1_1_e_o_sio.html#ace17237185a1efebb11eecf1a64afca0">serif::eos::EOSio</a></li>
<li>GetGradient()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a55d3e6dd6037eed30f3ebf52ca2d2a80">serif::polytrope::PolytropeOperator</a>, <a class="el" href="classserif_1_1pybind_1_1_py_matrix.html#af85c10a05928be7c910285a47660b8b6">serif::pybind::PyMatrix</a>, <a class="el" href="classserif_1_1pybind_1_1_py_operator.html#a48b36126e45ccf0662045492d73cf6e6">serif::pybind::PyOperator</a></li>
<li>getInstance()&#160;:&#160;<a class="el" href="classserif_1_1constant_1_1_constants.html#a9f5ea958e59c0cc3a09760d65199a3d8">serif::constant::Constants</a>, <a class="el" href="classserif_1_1probe_1_1_log_manager.html#a78db97bdbb72254855501677b18bc67e">serif::probe::LogManager</a>, <a class="el" href="classserif_1_1resource_1_1_resource_manager.html#a70b5ce13f2b169ccdaa23f73ad070bf0">serif::resource::ResourceManager</a></li>
<li>getLogger()&#160;:&#160;<a class="el" href="classserif_1_1probe_1_1_log_manager.html#a1dba1bc242c599c42c4882e5ab35c431">serif::probe::LogManager</a></li>
<li>getLoggerNames()&#160;:&#160;<a class="el" href="classserif_1_1probe_1_1_log_manager.html#a98d6bf86e6d7e6948f91ae4786b94940">serif::probe::LogManager</a></li>
@@ -172,10 +179,13 @@ $(function(){initNavTree('functions_func.html',''); initResizable(true); });
<li>getN()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#aace004c231e8ec057714fbca9fa8caae">serif::polytrope::PolySolver</a></li>
<li>getNumberFraction()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a0020ef34d2e4170495f36074af391e6c">serif::composition::Composition</a></li>
<li>getOrder()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#adbf0f08417551b87c93b9ad864460d81">serif::polytrope::PolySolver</a></li>
<li>getPhi()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a3ba006ede25891b69c76bebe5a07ee8a">serif::polytrope::PolySolver</a></li>
<li>GetProlongation()&#160;:&#160;<a class="el" href="classserif_1_1pybind_1_1_py_matrix.html#a750adff8c58ad990defaac845042bfb6">serif::pybind::PyMatrix</a>, <a class="el" href="classserif_1_1pybind_1_1_py_operator.html#ac1525bfe5a91522cd23ea6b6981b19b2">serif::pybind::PyOperator</a></li>
<li>getRegisteredSymbols()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a45b3ee396daad93e44387c71b0929ddd">serif::composition::Composition</a></li>
<li>getResource()&#160;:&#160;<a class="el" href="classserif_1_1resource_1_1_resource_manager.html#a0c187f9ef3abc3200d992ef008cfb40a">serif::resource::ResourceManager</a></li>
<li>getSolution()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a33ae7fcf09e558949f34eaf2df1388a1">serif::polytrope::PolySolver</a></li>
<li>getTable()&#160;:&#160;<a class="el" href="classserif_1_1eos_1_1_eos_i_o.html#ae5dff85fb847d0c284997dfb75ccf327">serif::eos::EosIO</a></li>
<li>GetRestriction()&#160;:&#160;<a class="el" href="classserif_1_1pybind_1_1_py_matrix.html#a94a50fcf642f0ee0b78348130da6af20">serif::pybind::PyMatrix</a>, <a class="el" href="classserif_1_1pybind_1_1_py_operator.html#a171416de4739d24ba27a484b19ef9b44">serif::pybind::PyOperator</a></li>
<li>getTable()&#160;:&#160;<a class="el" href="classserif_1_1eos_1_1_e_o_sio.html#af754f0e7169251ddfa96ad1dd0e08aef">serif::eos::EOSio</a></li>
<li>getTheta()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#aa8d086519347c175c9886412e95b383e">serif::polytrope::PolySolver</a></li>
<li>GMRESInverter()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_g_m_r_e_s_inverter.html#a26e52db2e259ceb0efc74a188a0626df">serif::polytrope::GMRESInverter</a></li>
</ul>
@@ -189,9 +199,10 @@ $(function(){initNavTree('functions_func.html',''); initResizable(true); });
<h3><a id="index_i" name="index_i"></a>- i -</h3><ul>
<li>initialize()&#160;:&#160;<a class="el" href="classserif_1_1constant_1_1_constants.html#a88578dd2dc433c5c862b01a1539862fe">serif::constant::Constants</a></li>
<li>Inverse()&#160;:&#160;<a class="el" href="classserif_1_1pybind_1_1_py_matrix.html#a084a6a3ca7f0f82681cf8856dbf6247e">serif::pybind::PyMatrix</a></li>
<li>isFinalized()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a99b59a8f7cf8ac1f6106ee9cb014c931">serif::polytrope::PolytropeOperator</a></li>
<li>IsLoaded()&#160;:&#160;<a class="el" href="classserif_1_1mesh_1_1_mesh_i_o.html#aa685c3f323d5189edfa326c866f552d6">serif::mesh::MeshIO</a></li>
<li>isLoaded()&#160;:&#160;<a class="el" href="classserif_1_1constant_1_1_constants.html#abaebbd4df3f8ce0162b1f6014f2420ac">serif::constant::Constants</a></li>
<li>isLoaded()&#160;:&#160;<a class="el" href="classserif_1_1constant_1_1_constants.html#ad10151838d376ed5c80b3c3968e0d0f9">serif::constant::Constants</a></li>
<li>isotope()&#160;:&#160;<a class="el" href="structserif_1_1composition_1_1_composition_entry.html#a17eb67ef1c07528295db845150c32615">serif::composition::CompositionEntry</a></li>
<li>isStiff()&#160;:&#160;<a class="el" href="classserif_1_1network_1_1approx8_1_1_approx8_network.html#a2e1f6e00bd622d2186724680dce7184f">serif::network::approx8::Approx8Network</a></li>
<li>isValidComposition()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a14d19ec7ff396768bfe553522abc44db">serif::composition::Composition</a></li>
@@ -206,9 +217,9 @@ $(function(){initNavTree('functions_func.html',''); initResizable(true); });
<h3><a id="index_l" name="index_l"></a>- l -</h3><ul>
<li>LinearRescale()&#160;:&#160;<a class="el" href="classserif_1_1mesh_1_1_mesh_i_o.html#a059c3c5dbabff0d175a6dccfbe8819f6">serif::mesh::MeshIO</a></li>
<li>load()&#160;:&#160;<a class="el" href="classserif_1_1constant_1_1_constants.html#aa9c956328b38dc37136afa98cc5edc49">serif::constant::Constants</a>, <a class="el" href="classserif_1_1eos_1_1_eos_i_o.html#ae7defa9a9e1b4a05f5220faf24ee2810">serif::eos::EosIO</a>, <a class="el" href="classserif_1_1resource_1_1_resource_manager.html#ad27100286a53042182fe6c2315dc32c6">serif::resource::ResourceManager</a></li>
<li>load()&#160;:&#160;<a class="el" href="classserif_1_1constant_1_1_constants.html#aa9c956328b38dc37136afa98cc5edc49">serif::constant::Constants</a>, <a class="el" href="classserif_1_1eos_1_1_e_o_sio.html#a2523c58c80d34d51677774bc0c4f9c5c">serif::eos::EOSio</a>, <a class="el" href="classserif_1_1resource_1_1_resource_manager.html#ad27100286a53042182fe6c2315dc32c6">serif::resource::ResourceManager</a></li>
<li>loadAllResources()&#160;:&#160;<a class="el" href="classserif_1_1resource_1_1_resource_manager.html#ace59a058090680691c1d5fdc1c3d9896">serif::resource::ResourceManager</a></li>
<li>loadHelm()&#160;:&#160;<a class="el" href="classserif_1_1eos_1_1_eos_i_o.html#a01213c94ceed0860810411288f185a02">serif::eos::EosIO</a></li>
<li>loadHelm()&#160;:&#160;<a class="el" href="classserif_1_1eos_1_1_e_o_sio.html#a1c452f772a217053a7c244b9468c1c95">serif::eos::EOSio</a></li>
<li>loadResource()&#160;:&#160;<a class="el" href="classserif_1_1resource_1_1_resource_manager.html#ae50d8cd6e967d02ca9e04220778d4b57">serif::resource::ResourceManager</a></li>
<li>LoadSolverUserParams()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a9054799327ed6752e33bf88e0722ebfc">serif::polytrope::PolySolver</a></li>
<li>LogManager()&#160;:&#160;<a class="el" href="classserif_1_1probe_1_1_log_manager.html#a0b6ca6d6064efb3d7b0d05d222238fed">serif::probe::LogManager</a></li>
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<li>MeshIO()&#160;:&#160;<a class="el" href="classserif_1_1mesh_1_1_mesh_i_o.html#aa08d33bc551cc289002cda7c9628bcce">serif::mesh::MeshIO</a></li>
<li>mix()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a5b493cbd3219704d7eca1f276e79c4ce">serif::composition::Composition</a></li>
<li>Mult()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_g_m_r_e_s_inverter.html#a698ccfa71e87e381b6c0a4d7a081a776">serif::polytrope::GMRESInverter</a>, <a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a3967768a154ffd53cae54e1b69ef32a5">serif::polytrope::PolytropeOperator</a>, <a class="el" href="classserif_1_1polytrope_1_1_schur_compliment.html#a697f3d788eaac9124e17c905b4b3d19f">serif::polytrope::SchurCompliment</a></li>
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<li>MultTranspose()&#160;:&#160;<a class="el" href="classserif_1_1pybind_1_1_py_matrix.html#a604a1781896e2535a9bd18a02e86801c">serif::pybind::PyMatrix</a>, <a class="el" href="classserif_1_1pybind_1_1_py_operator.html#a7ce2f734fb2b692cee5b8429e3a2ac58">serif::pybind::PyOperator</a></li>
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<li>reconstruct_full_state_vector()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a8a0fe3f8e5a477d2e33aaed29fb22dd0">serif::polytrope::PolytropeOperator</a></li>
<li>RecoverFEMSolution()&#160;:&#160;<a class="el" href="classserif_1_1pybind_1_1_py_matrix.html#a1176680256c5d3c85c36f1db248ea57c">serif::pybind::PyMatrix</a>, <a class="el" href="classserif_1_1pybind_1_1_py_operator.html#aa8b629c9ab7499ea6f6c30494b08374a">serif::pybind::PyOperator</a></li>
<li>registerSymbol()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a66fde1b9ae6724aefb8eb98800a0ae2b">serif::composition::Composition</a></li>
<li>rel_abundance()&#160;:&#160;<a class="el" href="structserif_1_1composition_1_1_composition_entry.html#a061453b8c21234b8f05d7093bf1998fc">serif::composition::CompositionEntry</a></li>
<li>ResourceManager()&#160;:&#160;<a class="el" href="classserif_1_1resource_1_1_resource_manager.html#a3b32babd2e81909bbd90d7f2d566fadb">serif::resource::ResourceManager</a></li>
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<li>setSpecies()&#160;:&#160;<a class="el" href="structserif_1_1composition_1_1_composition_entry.html#a6c41c9948c9a0d4e71879b14fd829a23">serif::composition::CompositionEntry</a></li>
<li>setStiff()&#160;:&#160;<a class="el" href="classserif_1_1network_1_1approx8_1_1_approx8_network.html#ac6d96bd1e5fbc2011a3a9e67a5ea4327">serif::network::approx8::Approx8Network</a></li>
<li>SetTime()&#160;:&#160;<a class="el" href="classserif_1_1pybind_1_1_py_coefficient.html#a78a7c3adef2557963c0988c1bb6e8266">serif::pybind::PyCoefficient</a>, <a class="el" href="classserif_1_1pybind_1_1_py_vector_coefficient.html#ac2b7e3c14f4ecc499ecab6a6b1b2c290">serif::pybind::PyVectorCoefficient</a></li>
<li>SetUp()&#160;:&#160;<a class="el" href="classconst_test.html#af4753885bf401953202f89d455a2702f">constTest</a></li>
<li>setupNewtonSolver()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a582ff9bdcfaeac3ad3497aadb5064990">serif::polytrope::PolySolver</a></li>
<li>solve()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a275f62a8b6a473ba0fe700692be561b0">serif::polytrope::PolySolver</a></li>
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<li>~Composition()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a622fb7c29475c6d58b6ba719c45ba874">serif::composition::Composition</a></li>
<li>~EosIO()&#160;:&#160;<a class="el" href="classserif_1_1eos_1_1_eos_i_o.html#adb2de6c8274b38c6bd71b4e696cf8d61">serif::eos::EosIO</a></li>
<li>~EOSio()&#160;:&#160;<a class="el" href="classserif_1_1eos_1_1_e_o_sio.html#a821b2cf469e018f6d7971ad47e3dca03">serif::eos::EOSio</a></li>
<li>~GMRESInverter()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_g_m_r_e_s_inverter.html#a78c5540e756ad46201097cc83d90d356">serif::polytrope::GMRESInverter</a></li>
<li>~HELMTable()&#160;:&#160;<a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_h_e_l_m_table.html#ae324718638916a18cf505cdcb21ff9cd">serif::eos::helmholtz::HELMTable</a></li>
<li>~LogManager()&#160;:&#160;<a class="el" href="classserif_1_1probe_1_1_log_manager.html#aa54e2c1cc121707bfc20d24674078d4a">serif::probe::LogManager</a></li>

39
docs/html/globals.html
View File

@@ -102,6 +102,8 @@ $(function(){initNavTree('globals.html',''); initResizable(true); });
<div class="textblock">Here is a list of all file members with links to the files they belong to:</div>
<h3><a id="index_b" name="index_b"></a>- b -</h3><ul>
<li>bind_assembly_level_enum()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a75685c66453d913751316ac89df32f61">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#a8df37ca3b70fe554bcd9accb0cc27803">bindings.h</a></li>
<li>bind_ordering_enum()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a26d748d26997e93c88b46d8a75dc3058">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#a9d2f7eb345fa6324a16cd95d046a260e">bindings.h</a></li>
<li>BREAKPOINT&#160;:&#160;<a class="el" href="debug_8h.html#a48fb4fe58bc76af81a90102d9df506c2">debug.h</a></li>
</ul>
@@ -113,6 +115,7 @@ $(function(){initNavTree('globals.html',''); initResizable(true); });
<h3><a id="index_d" name="index_d"></a>- d -</h3><ul>
<li>def_config_get()&#160;:&#160;<a class="el" href="config_2bindings_8cpp.html#a9315414c6adbea4d228ceea4890ce456">bindings.cpp</a></li>
<li>DEPRECATION_WARNING_OFF&#160;:&#160;<a class="el" href="warning__control_8h.html#a4101250c61feebb5d110c809fe7a2151">warning_control.h</a></li>
<li>DEPRECATION_WARNING_ON&#160;:&#160;<a class="el" href="warning__control_8h.html#aaab638127f083dc583d9ea4afe6cfc5f">warning_control.h</a></li>
</ul>
@@ -124,6 +127,7 @@ $(function(){initNavTree('globals.html',''); initResizable(true); });
<h3><a id="index_g" name="index_g"></a>- g -</h3><ul>
<li>get_ostream_str()&#160;:&#160;<a class="el" href="composition_2bindings_8cpp.html#ac40e8cbe234e90fa4333eb602e385525">bindings.cpp</a></li>
<li>getLastLine()&#160;:&#160;<a class="el" href="probe_test_8cpp.html#a6181751ac1c7f7f38b548af87ad506ab">probeTest.cpp</a></li>
</ul>
@@ -134,9 +138,44 @@ $(function(){initNavTree('globals.html',''); initResizable(true); });
</ul>
<h3><a id="index_p" name="index_p"></a>- p -</h3><ul>
<li>PYBIND11_MODULE()&#160;:&#160;<a class="el" href="bindings_8cpp.html#a5e8b88dbfb891cfc0afd6542a8782d15">bindings.cpp</a></li>
</ul>
<h3><a id="index_r" name="index_r"></a>- r -</h3><ul>
<li>register_array_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a29e345c8691864116eff4cae42036a40">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#a4d85a8221e7cb022799496076bf650ac">bindings.h</a></li>
<li>register_basis_type_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#aa77da7bd46ff84ed741309d6c8f0727a">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#afaaf66577ed0602dc8834f2424eb6686">bindings.h</a></li>
<li>register_bilinear_form_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a844b994afb7aa03d82321395399d1e5a">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#afdd4c14187c43a4d67c39f379fd329fd">bindings.h</a></li>
<li>register_coefficient_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a743fe7604881b0d0010d6e8e17a520d4">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#adfbdd36ff3d7d4cbc6376b7a716e1709">bindings.h</a></li>
<li>register_comp_bindings()&#160;:&#160;<a class="el" href="composition_2bindings_8cpp.html#aaa2856a230839a4db03fa6d06375e78b">bindings.cpp</a>, <a class="el" href="composition_2bindings_8h.html#a36f14b655b4f9d443c380660c2fc1ebd">bindings.h</a></li>
<li>register_config_bindings()&#160;:&#160;<a class="el" href="config_2bindings_8cpp.html#a3a1632e72e33841afbe4ff25208a9fff">bindings.cpp</a>, <a class="el" href="config_2bindings_8h.html#a3a1632e72e33841afbe4ff25208a9fff">bindings.h</a></li>
<li>register_const_bindings()&#160;:&#160;<a class="el" href="const_2bindings_8cpp.html#a5a155b52a4ae405516590cfa9f89c221">bindings.cpp</a>, <a class="el" href="const_2bindings_8h.html#a5a155b52a4ae405516590cfa9f89c221">bindings.h</a></li>
<li>register_eltrans_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#aef7c2431ee9314b6517723c4151f409f">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#a215a4bf55fed6b9acb345b562678cd50">bindings.h</a></li>
<li>register_eos_bindings()&#160;:&#160;<a class="el" href="eos_2bindings_8cpp.html#ac69ce0af208ef76b8cb308e9199613a2">bindings.cpp</a>, <a class="el" href="eos_2bindings_8h.html#ac69ce0af208ef76b8cb308e9199613a2">bindings.h</a></li>
<li>register_finite_element_collection_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#abcc4b9bd83fae79baea239b52cf9706d">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#abcc4b9bd83fae79baea239b52cf9706d">bindings.h</a></li>
<li>register_finite_element_space_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#aa064f076ab3b4468417bd2d8cb9d800d">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#af596ffece52d57774510d5bf97b83b93">bindings.h</a></li>
<li>register_grid_function_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a6db8d15b8ac8726b1fce514a2afba990">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#a7e3a0fcf6a05e721e1a0a1cd7b4fffd5">bindings.h</a></li>
<li>register_H1_FECollection_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a8fb80a3153bd038107be1c64f88e5080">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#a6606ccf2c3914d378e2f6b7d30d1c22f">bindings.h</a></li>
<li>register_intrule_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a9440490d507c065f56bf5d431df9014c">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#a7b358579b61989b7362d4b18a58791fe">bindings.h</a></li>
<li>register_matrix_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a9423a40c4afbd65a651f8dbe7524094f">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#a36270dede89d740c937d405dfbc4823e">bindings.h</a></li>
<li>register_mesh_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#af932ba8bcce44053d62348c4ab54429f">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#a45fde7249c230c7eab0bcd5d5a7e77f5">bindings.h</a></li>
<li>register_mfem_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a29d71b94b0e5dd99dbf66ba08bdc7044">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#a849818a2f40035ba0c07cad8a1c01431">bindings.h</a></li>
<li>register_mixed_bilinear_form_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#aa174f9ee0f75259a3f12fe29b9a0d418">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#a437c05539b484fd08112744b2a1e0bba">bindings.h</a></li>
<li>register_ND_FECollection_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a8e238a4fd37fb08d973976f67b56d58a">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#abf56b9bb48f98b8e7cad31f4521396e1">bindings.h</a></li>
<li>register_operator_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a0f93860712c465655274c96a10976cd8">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#afb0c29b727575316cf73d164c0c7ecb7">bindings.h</a></li>
<li>register_polytrope_bindings()&#160;:&#160;<a class="el" href="polytrope_2bindings_8cpp.html#a1bd7a6f74e9d62a88c3e528b96ea3649">bindings.cpp</a>, <a class="el" href="polytrope_2bindings_8h.html#a1bd7a6f74e9d62a88c3e528b96ea3649">bindings.h</a></li>
<li>register_RT_FECollection_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a577192bd568a6e6a3161d3b3269f92eb">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#aebb1e493f2054886ebc0b9c7749812ee">bindings.h</a></li>
<li>register_species_bindings()&#160;:&#160;<a class="el" href="composition_2bindings_8cpp.html#ae8f983fb06db09e052501a4d415019ae">bindings.cpp</a>, <a class="el" href="composition_2bindings_8h.html#a86b6f29e2357f917e716380eba75c669">bindings.h</a></li>
<li>register_table_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#ae2df51ddcf449457e7b2216e1a906890">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#ae2df51ddcf449457e7b2216e1a906890">bindings.h</a></li>
<li>register_vector_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#ad319ecb9a04f8bf19c328579b0499e3a">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#ab0b0da8d2cdae65094f5322cbe3b099d">bindings.h</a></li>
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<h3><a id="index_s" name="index_s"></a>- s -</h3><ul>
<li>STRINGIFY&#160;:&#160;<a class="el" href="resource_manager_8cpp.html#a6df1d22fb5f09eccc23b9f399670cfd7">resourceManager.cpp</a></li>
<li>stripTimestamps()&#160;:&#160;<a class="el" href="probe_test_8cpp.html#a1177d7bc99ddb16fe874dc41441b9725">probeTest.cpp</a></li>
<li>sv_to_string()&#160;:&#160;<a class="el" href="composition_2bindings_8cpp.html#a408b8a7118b5d93e756621d3350f8231">bindings.cpp</a></li>
</ul>

47
docs/html/globals_func.html
View File

@@ -101,12 +101,24 @@ $(function(){initNavTree('globals_func.html',''); initResizable(true); });
<div class="contents">
<div class="textblock">Here is a list of all functions with links to the files they belong to:</div>
<h3><a id="index_b" name="index_b"></a>- b -</h3><ul>
<li>bind_assembly_level_enum()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a75685c66453d913751316ac89df32f61">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#a8df37ca3b70fe554bcd9accb0cc27803">bindings.h</a></li>
<li>bind_ordering_enum()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a26d748d26997e93c88b46d8a75dc3058">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#a9d2f7eb345fa6324a16cd95d046a260e">bindings.h</a></li>
</ul>
<h3><a id="index_c" name="index_c"></a>- c -</h3><ul>
<li>ComputeMeshVolume()&#160;:&#160;<a class="el" href="mesh_i_o_test_8cpp.html#aa6ba7ddcf2f95334ee7497d22d9f0f25">meshIOTest.cpp</a></li>
</ul>
<h3><a id="index_d" name="index_d"></a>- d -</h3><ul>
<li>def_config_get()&#160;:&#160;<a class="el" href="config_2bindings_8cpp.html#a9315414c6adbea4d228ceea4890ce456">bindings.cpp</a></li>
</ul>
<h3><a id="index_g" name="index_g"></a>- g -</h3><ul>
<li>get_ostream_str()&#160;:&#160;<a class="el" href="composition_2bindings_8cpp.html#ac40e8cbe234e90fa4333eb602e385525">bindings.cpp</a></li>
<li>getLastLine()&#160;:&#160;<a class="el" href="probe_test_8cpp.html#a6181751ac1c7f7f38b548af87ad506ab">probeTest.cpp</a></li>
</ul>
@@ -116,8 +128,43 @@ $(function(){initNavTree('globals_func.html',''); initResizable(true); });
</ul>
<h3><a id="index_p" name="index_p"></a>- p -</h3><ul>
<li>PYBIND11_MODULE()&#160;:&#160;<a class="el" href="bindings_8cpp.html#a5e8b88dbfb891cfc0afd6542a8782d15">bindings.cpp</a></li>
</ul>
<h3><a id="index_r" name="index_r"></a>- r -</h3><ul>
<li>register_array_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a29e345c8691864116eff4cae42036a40">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#a4d85a8221e7cb022799496076bf650ac">bindings.h</a></li>
<li>register_basis_type_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#aa77da7bd46ff84ed741309d6c8f0727a">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#afaaf66577ed0602dc8834f2424eb6686">bindings.h</a></li>
<li>register_bilinear_form_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a844b994afb7aa03d82321395399d1e5a">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#afdd4c14187c43a4d67c39f379fd329fd">bindings.h</a></li>
<li>register_coefficient_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a743fe7604881b0d0010d6e8e17a520d4">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#adfbdd36ff3d7d4cbc6376b7a716e1709">bindings.h</a></li>
<li>register_comp_bindings()&#160;:&#160;<a class="el" href="composition_2bindings_8cpp.html#aaa2856a230839a4db03fa6d06375e78b">bindings.cpp</a>, <a class="el" href="composition_2bindings_8h.html#a36f14b655b4f9d443c380660c2fc1ebd">bindings.h</a></li>
<li>register_config_bindings()&#160;:&#160;<a class="el" href="config_2bindings_8cpp.html#a3a1632e72e33841afbe4ff25208a9fff">bindings.cpp</a>, <a class="el" href="config_2bindings_8h.html#a3a1632e72e33841afbe4ff25208a9fff">bindings.h</a></li>
<li>register_const_bindings()&#160;:&#160;<a class="el" href="const_2bindings_8cpp.html#a5a155b52a4ae405516590cfa9f89c221">bindings.cpp</a>, <a class="el" href="const_2bindings_8h.html#a5a155b52a4ae405516590cfa9f89c221">bindings.h</a></li>
<li>register_eltrans_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#aef7c2431ee9314b6517723c4151f409f">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#a215a4bf55fed6b9acb345b562678cd50">bindings.h</a></li>
<li>register_eos_bindings()&#160;:&#160;<a class="el" href="eos_2bindings_8cpp.html#ac69ce0af208ef76b8cb308e9199613a2">bindings.cpp</a>, <a class="el" href="eos_2bindings_8h.html#ac69ce0af208ef76b8cb308e9199613a2">bindings.h</a></li>
<li>register_finite_element_collection_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#abcc4b9bd83fae79baea239b52cf9706d">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#abcc4b9bd83fae79baea239b52cf9706d">bindings.h</a></li>
<li>register_finite_element_space_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#aa064f076ab3b4468417bd2d8cb9d800d">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#af596ffece52d57774510d5bf97b83b93">bindings.h</a></li>
<li>register_grid_function_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#a6db8d15b8ac8726b1fce514a2afba990">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#a7e3a0fcf6a05e721e1a0a1cd7b4fffd5">bindings.h</a></li>
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<li>register_vector_bindings()&#160;:&#160;<a class="el" href="mfem_2bindings_8cpp.html#ad319ecb9a04f8bf19c328579b0499e3a">bindings.cpp</a>, <a class="el" href="mfem_2bindings_8h.html#ab0b0da8d2cdae65094f5322cbe3b099d">bindings.h</a></li>
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<h3><a id="index_s" name="index_s"></a>- s -</h3><ul>
<li>stripTimestamps()&#160;:&#160;<a class="el" href="probe_test_8cpp.html#a1177d7bc99ddb16fe874dc41441b9725">probeTest.cpp</a></li>
<li>sv_to_string()&#160;:&#160;<a class="el" href="composition_2bindings_8cpp.html#a408b8a7118b5d93e756621d3350f8231">bindings.cpp</a></li>
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6
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@@ -291,7 +291,7 @@ Logging</h2>
</div><!-- fragment --><h2><a class="anchor" id="usage_eos"></a>
Equation of State (EOS)</h2>
<p>The <code>EosIO</code> class loads EOS tables, and the <code>helmholtz</code> namespace provides functions to use them, for example, the Helmholtz EOS.</p>
<div class="fragment"><div class="line"><span class="preprocessor">#include &quot;<a class="code" href="eos_i_o_8h.html">eosIO.h</a>&quot;</span></div>
<div class="fragment"><div class="line"><span class="preprocessor">#include &quot;<a class="code" href="_e_o_sio_8h.html">eosIO.h</a>&quot;</span></div>
<div class="line"><span class="preprocessor">#include &quot;<a class="code" href="helm_8h.html">helm.h</a>&quot;</span></div>
<div class="line"><span class="preprocessor">#include &lt;iostream&gt;</span></div>
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<div class="line"> }</div>
<div class="line"> <span class="keywordflow">return</span> 0;</div>
<div class="line">}</div>
<div class="ttc" id="aeos_i_o_8h_html"><div class="ttname"><a href="eos_i_o_8h.html">eosIO.h</a></div></div>
<div class="ttc" id="a_e_o_sio_8h_html"><div class="ttname"><a href="_e_o_sio_8h.html">EOSio.h</a></div></div>
<div class="ttc" id="ahelm_8h_html"><div class="ttname"><a href="helm_8h.html">helm.h</a></div></div>
</div><!-- fragment --><h2><a class="anchor" id="usage_meshio"></a>
Mesh Handling</h2>
@@ -366,7 +366,7 @@ Key Modules and Components</h1>
<p>4DSSE is organized into several key modules:</p>
<ul>
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<li><b>Equation of State (EOS) (<code><a class="el" href="helm_8h.html">helm.h</a></code>, <code><a class="el" href="eos_i_o_8h.html">eosIO.h</a></code>):</b> Manages Equation of State data. <code><a class="el" href="helm_8h.html">helm.h</a></code> provides an implementation of the Helmholtz EOS (Timmes &amp; Swesty 2000), including structures for table data (<code>HELMTable</code>), input parameters (<code>EOSInput</code>), and output results (<code>EOS</code>). It also defines functions for reading tables and calculating EOS quantities. <code><a class="el" href="eos_i_o_8h.html">eosIO.h</a></code> provides the <code>EosIO</code> class for loading EOS tables from files, currently supporting the HELM table format.</li>
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<li><b>Chemical Composition (<code><a class="el" href="composition_8h.html">composition.h</a></code>, <code>atomicSpecies.h</code>):</b> Manages chemical compositions, allowing representation in mass or number fractions. It interfaces with <code>atomicSpecies.h</code> which provides a database of atomic species properties (based on AME2020).</li>
<li><b>Nuclear Reaction Networks (<code><a class="el" href="network_8h.html">network.h</a></code>, <code><a class="el" href="approx8_8h.html" title="Header file for the Approx8 nuclear reaction network.">approx8.h</a></code>):</b> Defines a base <code>Network</code> class for nuclear reaction network calculations. <code><a class="el" href="approx8_8h.html" title="Header file for the Approx8 nuclear reaction network.">approx8.h</a></code> provides a specific implementation, <code>Approx8Network</code>, for an 8-isotope network (H1, He3, He4, C12, N14, O16, Ne20, Mg24) based on Frank Timmes' "aprox8". It includes functions for individual reaction rates and uses Boost.Numeric.Odeint for solving the ODE system.</li>
<li><b>Physical Constants (<code><a class="el" href="const_8h.html">const.h</a></code>):</b> A singleton class <code>Constants</code> that loads and provides access to a wide range of physical constants with their values, uncertainties, units, and references.</li>

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15
docs/html/search/functions_8.js
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@@ -1,11 +1,12 @@
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8
docs/html/search/searchdata.js
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@@ -1,11 +1,11 @@
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2: "lprs",
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4: "abcdefghiklmnoprstuvwx~",
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6: "aemrv",
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6
docs/latex/annotated.tex
View File

@@ -13,7 +13,7 @@ Here are the classes, structs, unions and interfaces with brief descriptions\+:\
\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1polytrope_1_1polycoeff_1_1d_theta_interp_coeff}{serif\+::polytrope\+::polycoeff\+::d\+Theta\+Interp\+Coeff}} }{\pageref{structserif_1_1polytrope_1_1polycoeff_1_1d_theta_interp_coeff}}{}
\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1eos_1_1helmholtz_1_1_e_o_s}{serif\+::eos\+::helmholtz\+::\+EOS}} \\*Structure to hold the output parameters and derivatives of the \doxylink{structserif_1_1eos_1_1helmholtz_1_1_e_o_s}{EOS} calculation }{\pageref{structserif_1_1eos_1_1helmholtz_1_1_e_o_s}}{}
\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1eos_1_1helmholtz_1_1_e_o_s_input}{serif\+::eos\+::helmholtz\+::\+EOSInput}} \\*Structure to hold the input parameters for the \doxylink{structserif_1_1eos_1_1helmholtz_1_1_e_o_s}{EOS} calculation }{\pageref{structserif_1_1eos_1_1helmholtz_1_1_e_o_s_input}}{}
\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1eos_1_1_eos_i_o}{serif\+::eos\+::\+Eos\+IO}} \\*Handles the input/output operations for EOS tables }{\pageref{classserif_1_1eos_1_1_eos_i_o}}{}
\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1eos_1_1_e_o_sio}{serif\+::eos\+::\+EOSio}} \\*Handles the input/output operations for EOS tables }{\pageref{classserif_1_1eos_1_1_e_o_sio}}{}
\item\contentsline{section}{\mbox{\hyperlink{classeos_test}{eos\+Test}} \\*Test suite for the const class }{\pageref{classeos_test}}{}
\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1polytrope_1_1form_bundle}{serif\+::polytrope\+::form\+Bundle}} \\*Structure to hold the various bilinear and nonlinear forms for the polytrope problem }{\pageref{structserif_1_1polytrope_1_1form_bundle}}{}
\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1composition_1_1_global_composition}{serif\+::composition\+::\+Global\+Composition}} \\*Represents the global composition of a system. This tends to be used after finalize and is primarily for internal use }{\pageref{structserif_1_1composition_1_1_global_composition}}{}
@@ -33,6 +33,10 @@ Here are the classes, structs, unions and interfaces with brief descriptions\+:\
\item\contentsline{section}{\mbox{\hyperlink{classpoly_test}{poly\+Test}} }{\pageref{classpoly_test}}{}
\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1polytrope_1_1_polytrope_operator}{serif\+::polytrope\+::\+Polytrope\+Operator}} \\*Represents the coupled nonlinear operator for the polytropic system }{\pageref{classserif_1_1polytrope_1_1_polytrope_operator}}{}
\item\contentsline{section}{\mbox{\hyperlink{classprobe_test}{probe\+Test}} }{\pageref{classprobe_test}}{}
\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1pybind_1_1_py_coefficient}{serif\+::pybind\+::\+Py\+Coefficient}} \\*Trampoline class for mfem\+::\+Coefficient }{\pageref{classserif_1_1pybind_1_1_py_coefficient}}{}
\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1pybind_1_1_py_matrix}{serif\+::pybind\+::\+Py\+Matrix}} \\*A trampoline class for mfem\+::\+Matrix }{\pageref{classserif_1_1pybind_1_1_py_matrix}}{}
\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1pybind_1_1_py_operator}{serif\+::pybind\+::\+Py\+Operator}} \\*Trampoline class for mfem\+::\+Operator }{\pageref{classserif_1_1pybind_1_1_py_operator}}{}
\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1pybind_1_1_py_vector_coefficient}{serif\+::pybind\+::\+Py\+Vector\+Coefficient}} \\*Trampoline class for mfem\+::\+Vector\+Coefficient }{\pageref{classserif_1_1pybind_1_1_py_vector_coefficient}}{}
\item\contentsline{section}{\mbox{\hyperlink{class_resource_manager}{Resource\+Manager}} \\*Manages resources within the application }{\pageref{class_resource_manager}}{}
\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1resource_1_1_resource_manager}{serif\+::resource\+::\+Resource\+Manager}} }{\pageref{classserif_1_1resource_1_1_resource_manager}}{}
\item\contentsline{section}{\mbox{\hyperlink{classresource_manager_test}{resource\+Manager\+Test}} \\*Test suite for the resource\+Manager class }{\pageref{classresource_manager_test}}{}

26
docs/latex/files.tex
View File

@@ -6,9 +6,9 @@ Here is a list of all files with brief descriptions\+:\begin{DoxyCompactList}
\item\contentsline{section}{src/config/public/\mbox{\hyperlink{config_8h}{config.\+h}} }{\pageref{config_8h}}{}
\item\contentsline{section}{src/constants/private/\mbox{\hyperlink{const_8cpp}{const.\+cpp}} }{\pageref{const_8cpp}}{}
\item\contentsline{section}{src/constants/public/\mbox{\hyperlink{const_8h}{const.\+h}} }{\pageref{const_8h}}{}
\item\contentsline{section}{src/eos/private/\mbox{\hyperlink{eos_i_o_8cpp}{eos\+IO.\+cpp}} }{\pageref{eos_i_o_8cpp}}{}
\item\contentsline{section}{src/eos/private/\mbox{\hyperlink{_e_o_sio_8cpp}{EOSio.\+cpp}} }{\pageref{_e_o_sio_8cpp}}{}
\item\contentsline{section}{src/eos/private/\mbox{\hyperlink{helm_8cpp}{helm.\+cpp}} }{\pageref{helm_8cpp}}{}
\item\contentsline{section}{src/eos/public/\mbox{\hyperlink{eos_i_o_8h}{eos\+IO.\+h}} }{\pageref{eos_i_o_8h}}{}
\item\contentsline{section}{src/eos/public/\mbox{\hyperlink{_e_o_sio_8h}{EOSio.\+h}} }{\pageref{_e_o_sio_8h}}{}
\item\contentsline{section}{src/eos/public/\mbox{\hyperlink{helm_8h}{helm.\+h}} }{\pageref{helm_8h}}{}
\item\contentsline{section}{src/mesh\+IO/private/\mbox{\hyperlink{mesh_i_o_8cpp}{mesh\+IO.\+cpp}} }{\pageref{mesh_i_o_8cpp}}{}
\item\contentsline{section}{src/mesh\+IO/public/\mbox{\hyperlink{mesh_i_o_8h}{mesh\+IO.\+h}} }{\pageref{mesh_i_o_8h}}{}
@@ -30,6 +30,26 @@ Here is a list of all files with brief descriptions\+:\begin{DoxyCompactList}
\item\contentsline{section}{src/polytrope/utils/public/\mbox{\hyperlink{utilities_8h}{utilities.\+h}} }{\pageref{utilities_8h}}{}
\item\contentsline{section}{src/probe/private/\mbox{\hyperlink{probe_8cpp}{probe.\+cpp}} }{\pageref{probe_8cpp}}{}
\item\contentsline{section}{src/probe/public/\mbox{\hyperlink{probe_8h}{probe.\+h}} }{\pageref{probe_8h}}{}
\item\contentsline{section}{src/python/\mbox{\hyperlink{bindings_8cpp}{bindings.\+cpp}} }{\pageref{bindings_8cpp}}{}
\item\contentsline{section}{src/python/composition/\mbox{\hyperlink{composition_2bindings_8cpp}{bindings.\+cpp}} }{\pageref{composition_2bindings_8cpp}}{}
\item\contentsline{section}{src/python/composition/\mbox{\hyperlink{composition_2bindings_8h}{bindings.\+h}} }{\pageref{composition_2bindings_8h}}{}
\item\contentsline{section}{src/python/config/\mbox{\hyperlink{config_2bindings_8cpp}{bindings.\+cpp}} }{\pageref{config_2bindings_8cpp}}{}
\item\contentsline{section}{src/python/config/\mbox{\hyperlink{config_2bindings_8h}{bindings.\+h}} }{\pageref{config_2bindings_8h}}{}
\item\contentsline{section}{src/python/const/\mbox{\hyperlink{const_2bindings_8cpp}{bindings.\+cpp}} }{\pageref{const_2bindings_8cpp}}{}
\item\contentsline{section}{src/python/const/\mbox{\hyperlink{const_2bindings_8h}{bindings.\+h}} }{\pageref{const_2bindings_8h}}{}
\item\contentsline{section}{src/python/eos/\mbox{\hyperlink{eos_2bindings_8cpp}{bindings.\+cpp}} }{\pageref{eos_2bindings_8cpp}}{}
\item\contentsline{section}{src/python/eos/\mbox{\hyperlink{eos_2bindings_8h}{bindings.\+h}} }{\pageref{eos_2bindings_8h}}{}
\item\contentsline{section}{src/python/mfem/\mbox{\hyperlink{mfem_2bindings_8cpp}{bindings.\+cpp}} }{\pageref{mfem_2bindings_8cpp}}{}
\item\contentsline{section}{src/python/mfem/\mbox{\hyperlink{mfem_2bindings_8h}{bindings.\+h}} \\*Declares functions to register MFEM core library components with pybind11 }{\pageref{mfem_2bindings_8h}}{}
\item\contentsline{section}{src/python/mfem/\+Trampoline/\+Py\+MFEMTrampolines/\+Coefficient/\mbox{\hyperlink{_py_coefficient_8cpp}{Py\+Coefficient.\+cpp}} }{\pageref{_py_coefficient_8cpp}}{}
\item\contentsline{section}{src/python/mfem/\+Trampoline/\+Py\+MFEMTrampolines/\+Coefficient/\mbox{\hyperlink{_py_coefficient_8h}{Py\+Coefficient.\+h}} \\*Defines pybind11 trampoline classes for mfem\+::\+Coefficient and mfem\+::\+Vector\+Coefficient }{\pageref{_py_coefficient_8h}}{}
\item\contentsline{section}{src/python/mfem/\+Trampoline/\+Py\+MFEMTrampolines/\+Operator/\mbox{\hyperlink{_py_operator_8cpp}{Py\+Operator.\+cpp}} }{\pageref{_py_operator_8cpp}}{}
\item\contentsline{section}{src/python/mfem/\+Trampoline/\+Py\+MFEMTrampolines/\+Operator/\mbox{\hyperlink{_py_operator_8h}{Py\+Operator.\+h}} \\*Defines a pybind11 trampoline class for mfem\+::\+Operator }{\pageref{_py_operator_8h}}{}
\item\contentsline{section}{src/python/mfem/\+Trampoline/\+Py\+MFEMTrampolines/\+Operator/\+Matrix/\mbox{\hyperlink{_py_matrix_8cpp}{Py\+Matrix.\+cpp}} }{\pageref{_py_matrix_8cpp}}{}
\item\contentsline{section}{src/python/mfem/\+Trampoline/\+Py\+MFEMTrampolines/\+Operator/\+Matrix/\mbox{\hyperlink{_py_matrix_8h}{Py\+Matrix.\+h}} \\*Defines a pybind11 trampoline class for mfem\+::\+Matrix }{\pageref{_py_matrix_8h}}{}
\item\contentsline{section}{src/python/polytrope/\mbox{\hyperlink{polytrope_2bindings_8cpp}{bindings.\+cpp}} }{\pageref{polytrope_2bindings_8cpp}}{}
\item\contentsline{section}{src/python/polytrope/\mbox{\hyperlink{polytrope_2bindings_8h}{bindings.\+h}} \\*Declares the function to register polytrope module C++ components with pybind11 }{\pageref{polytrope_2bindings_8h}}{}
\item\contentsline{section}{src/python/serif/\mbox{\hyperlink{____init_____8py}{\+\_\+\+\_\+init\+\_\+\+\_\+.\+py}} }{\pageref{____init_____8py}}{}
\item\contentsline{section}{src/resource/private/\mbox{\hyperlink{resource_manager_8cpp}{resource\+Manager.\+cpp}} }{\pageref{resource_manager_8cpp}}{}
\item\contentsline{section}{src/resource/private/\mbox{\hyperlink{resource_manager_types_8cpp}{resource\+Manager\+Types.\+cpp}} }{\pageref{resource_manager_types_8cpp}}{}
\item\contentsline{section}{src/resource/public/\mbox{\hyperlink{resource_manager_8h}{resource\+Manager.\+h}} }{\pageref{resource_manager_8h}}{}
@@ -44,5 +64,7 @@ Here is a list of all files with brief descriptions\+:\begin{DoxyCompactList}
\item\contentsline{section}{tests/network/\mbox{\hyperlink{approx8_test_8cpp}{approx8\+Test.\+cpp}} }{\pageref{approx8_test_8cpp}}{}
\item\contentsline{section}{tests/poly/\mbox{\hyperlink{poly_test_8cpp}{poly\+Test.\+cpp}} }{\pageref{poly_test_8cpp}}{}
\item\contentsline{section}{tests/probe/\mbox{\hyperlink{probe_test_8cpp}{probe\+Test.\+cpp}} }{\pageref{probe_test_8cpp}}{}
\item\contentsline{section}{tests/python/polytrope/\mbox{\hyperlink{load_mesh_8py}{load\+Mesh.\+py}} }{\pageref{load_mesh_8py}}{}
\item\contentsline{section}{tests/python/polytrope/\mbox{\hyperlink{run_polytrope_8py}{run\+Polytrope.\+py}} }{\pageref{run_polytrope_8py}}{}
\item\contentsline{section}{tests/resource/\mbox{\hyperlink{resource_manager_test_8cpp}{resource\+Manager\+Test.\+cpp}} }{\pageref{resource_manager_test_8cpp}}{}
\end{DoxyCompactList}

61
docs/latex/refman.tex
View File

@@ -244,7 +244,9 @@
\chapter{File Index}
\input{files}
\chapter{Namespace Documentation}
\input{namespaceload_mesh}
\input{namespacepoly_m_f_e_m_utils}
\input{namespacerun_polytrope}
\input{namespaceserif}
\input{namespaceserif_1_1composition}
\input{namespaceserif_1_1config}
@@ -259,6 +261,7 @@
\input{namespaceserif_1_1polytrope_1_1polycoeff}
\input{namespaceserif_1_1polytrope_1_1poly_m_f_e_m_utils}
\input{namespaceserif_1_1probe}
\input{namespaceserif_1_1pybind}
\input{namespaceserif_1_1resource}
\input{namespaceserif_1_1resource_1_1types}
\input{namespaceserif_1_1types}
@@ -277,7 +280,7 @@
\input{structserif_1_1polytrope_1_1polycoeff_1_1d_theta_interp_coeff}
\input{structserif_1_1eos_1_1helmholtz_1_1_e_o_s}
\input{structserif_1_1eos_1_1helmholtz_1_1_e_o_s_input}
\input{classserif_1_1eos_1_1_eos_i_o}
\input{classserif_1_1eos_1_1_e_o_sio}
\input{classeos_test}
\input{structserif_1_1polytrope_1_1form_bundle}
\input{structserif_1_1composition_1_1_global_composition}
@@ -297,6 +300,10 @@
\input{classpoly_test}
\input{classserif_1_1polytrope_1_1_polytrope_operator}
\input{classprobe_test}
\input{classserif_1_1pybind_1_1_py_coefficient}
\input{classserif_1_1pybind_1_1_py_matrix}
\input{classserif_1_1pybind_1_1_py_operator}
\input{classserif_1_1pybind_1_1_py_vector_coefficient}
\input{class_resource_manager}
\input{classserif_1_1resource_1_1_resource_manager}
\input{classresource_manager_test}
@@ -317,12 +324,12 @@
\input{const_8cpp_source}
\input{const_8h}
\input{const_8h_source}
\input{eos_i_o_8cpp}
\input{eos_i_o_8cpp_source}
\input{_e_o_sio_8cpp}
\input{_e_o_sio_8cpp_source}
\input{helm_8cpp}
\input{helm_8cpp_source}
\input{eos_i_o_8h}
\input{eos_i_o_8h_source}
\input{_e_o_sio_8h}
\input{_e_o_sio_8h_source}
\input{helm_8h}
\input{helm_8h_source}
\input{mesh_i_o_8cpp}
@@ -365,6 +372,46 @@
\input{probe_8cpp_source}
\input{probe_8h}
\input{probe_8h_source}
\input{bindings_8cpp}
\input{bindings_8cpp_source}
\input{composition_2bindings_8cpp}
\input{composition_2bindings_8cpp_source}
\input{config_2bindings_8cpp}
\input{config_2bindings_8cpp_source}
\input{const_2bindings_8cpp}
\input{const_2bindings_8cpp_source}
\input{eos_2bindings_8cpp}
\input{eos_2bindings_8cpp_source}
\input{mfem_2bindings_8cpp}
\input{mfem_2bindings_8cpp_source}
\input{polytrope_2bindings_8cpp}
\input{polytrope_2bindings_8cpp_source}
\input{composition_2bindings_8h}
\input{composition_2bindings_8h_source}
\input{config_2bindings_8h}
\input{config_2bindings_8h_source}
\input{const_2bindings_8h}
\input{const_2bindings_8h_source}
\input{eos_2bindings_8h}
\input{eos_2bindings_8h_source}
\input{mfem_2bindings_8h}
\input{mfem_2bindings_8h_source}
\input{polytrope_2bindings_8h}
\input{polytrope_2bindings_8h_source}
\input{_py_coefficient_8cpp}
\input{_py_coefficient_8cpp_source}
\input{_py_coefficient_8h}
\input{_py_coefficient_8h_source}
\input{_py_matrix_8cpp}
\input{_py_matrix_8cpp_source}
\input{_py_matrix_8h}
\input{_py_matrix_8h_source}
\input{_py_operator_8cpp}
\input{_py_operator_8cpp_source}
\input{_py_operator_8h}
\input{_py_operator_8h_source}
\input{____init_____8py}
\input{____init_____8py_source}
\input{resource_manager_8cpp}
\input{resource_manager_8cpp_source}
\input{resource_manager_types_8cpp}
@@ -393,6 +440,10 @@
\input{poly_test_8cpp_source}
\input{probe_test_8cpp}
\input{probe_test_8cpp_source}
\input{load_mesh_8py}
\input{load_mesh_8py_source}
\input{run_polytrope_8py}
\input{run_polytrope_8py_source}
\input{resource_manager_test_8cpp}
\input{resource_manager_test_8cpp_source}
\chapter{Examples}