diff --git a/docs/html/annotated.html b/docs/html/annotated.html index b9be07c..7aad003 100644 --- a/docs/html/annotated.html +++ b/docs/html/annotated.html @@ -117,7 +117,7 @@ $(function(){initNavTree('annotated.html',''); initResizable(true); });  CEOSStructure to hold the output parameters and derivatives of the EOS calculation  CEOSInputStructure to hold the input parameters for the EOS calculation  CHELMTableStructure to hold the Helmholtz EOS table data - CEosIOHandles the input/output operations for EOS tables + CEOSioHandles the input/output operations for EOS tables  ▼Nmesh  CMeshIOClass for handling mesh input/output operations  ▼Nnetwork @@ -143,19 +143,24 @@ $(function(){initNavTree('annotated.html',''); initResizable(true); });  CsolverBundleStructure to manage the lifetime of MFEM solver objects  ▼NprobeThe Probe namespace contains utility functions for debugging and logging  CLogManagerClass to manage logging operations - ▼Nresource - CResourceManager - Capprox8Test - CcompositionTestTest suite for the composition class - CconfigTestTest suite for the Config class - CconfigTestPrivateAccessor - CconstTestTest suite for the const class - CeosTestTest suite for the const class - CmeshIOTest - CpolyTest - CprobeTest - CResourceManagerManages resources within the application - CresourceManagerTestTest suite for the resourceManager class + ▼NpybindContains pybind11 helper classes and trampoline classes for interfacing C++ with Python + CPyCoefficientTrampoline class for mfem::Coefficient + CPyMatrixA trampoline class for mfem::Matrix + CPyOperatorTrampoline class for mfem::Operator + CPyVectorCoefficientTrampoline class for mfem::VectorCoefficient + ▼Nresource + CResourceManager + Capprox8Test + CcompositionTestTest suite for the composition class + CconfigTestTest suite for the Config class + CconfigTestPrivateAccessor + CconstTestTest suite for the const class + CeosTestTest suite for the const class + CmeshIOTest + CpolyTest + CprobeTest + CResourceManagerManages resources within the application + CresourceManagerTestTest suite for the resourceManager class diff --git a/docs/html/annotated_dup.js b/docs/html/annotated_dup.js index 530fa47..335752d 100644 --- a/docs/html/annotated_dup.js +++ b/docs/html/annotated_dup.js @@ -16,7 +16,7 @@ var annotated_dup = [ "EOSInput", "structserif_1_1eos_1_1helmholtz_1_1_e_o_s_input.html", "structserif_1_1eos_1_1helmholtz_1_1_e_o_s_input" ], [ "HELMTable", "structserif_1_1eos_1_1helmholtz_1_1_h_e_l_m_table.html", "structserif_1_1eos_1_1helmholtz_1_1_h_e_l_m_table" ] ] ], - [ "EosIO", "classserif_1_1eos_1_1_eos_i_o.html", "classserif_1_1eos_1_1_eos_i_o" ] + [ "EOSio", "classserif_1_1eos_1_1_e_o_sio.html", "classserif_1_1eos_1_1_e_o_sio" ] ] ], [ "mesh", "namespaceserif_1_1mesh.html", [ [ "MeshIO", "classserif_1_1mesh_1_1_mesh_i_o.html", "classserif_1_1mesh_1_1_mesh_i_o" ] @@ -50,6 +50,12 @@ var annotated_dup = [ "probe", "namespaceserif_1_1probe.html", [ [ "LogManager", "classserif_1_1probe_1_1_log_manager.html", "classserif_1_1probe_1_1_log_manager" ] ] ], + [ "pybind", "namespaceserif_1_1pybind.html", [ + [ "PyCoefficient", "classserif_1_1pybind_1_1_py_coefficient.html", "classserif_1_1pybind_1_1_py_coefficient" ], + [ "PyMatrix", "classserif_1_1pybind_1_1_py_matrix.html", "classserif_1_1pybind_1_1_py_matrix" ], + [ "PyOperator", "classserif_1_1pybind_1_1_py_operator.html", "classserif_1_1pybind_1_1_py_operator" ], + [ "PyVectorCoefficient", "classserif_1_1pybind_1_1_py_vector_coefficient.html", "classserif_1_1pybind_1_1_py_vector_coefficient" ] + ] ], [ "resource", "namespaceserif_1_1resource.html", [ [ "ResourceManager", "classserif_1_1resource_1_1_resource_manager.html", "classserif_1_1resource_1_1_resource_manager" ] ] ] diff --git a/docs/html/classes.html b/docs/html/classes.html index 8fa8180..edb01c9 100644 --- a/docs/html/classes.html +++ b/docs/html/classes.html @@ -115,7 +115,7 @@ $(function(){initNavTree('classes.html',''); initResizable(true); });
dThetaInterpCoeff (serif::polytrope::polycoeff)
E
-
EOS (serif::eos::helmholtz)
EOSInput (serif::eos::helmholtz)
EosIO (serif::eos)
eosTest
+
EOS (serif::eos::helmholtz)
EOSInput (serif::eos::helmholtz)
EOSio (serif::eos)
eosTest
F
formBundle (serif::polytrope)
@@ -142,7 +142,7 @@ $(function(){initNavTree('classes.html',''); initResizable(true); });
ODE (serif::network::approx8)
P
-
PolySolver (serif::polytrope)
polyTest
PolytropeOperator (serif::polytrope)
probeTest
+
PolySolver (serif::polytrope)
polyTest
PolytropeOperator (serif::polytrope)
probeTest
PyCoefficient (serif::pybind)
PyMatrix (serif::pybind)
PyOperator (serif::pybind)
PyVectorCoefficient (serif::pybind)
R
ResourceManager
ResourceManager (serif::resource)
resourceManagerTest
diff --git a/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html b/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html index 6fc598c..72c16bf 100644 --- a/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html +++ b/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html @@ -123,6 +123,8 @@ Directories    probe   + python +   resource    types diff --git a/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.js b/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.js index d2225f8..068b49d 100644 --- a/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.js +++ b/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.js @@ -9,6 +9,7 @@ var dir_68267d1309a1af8e8297ef4c3efbcdba = [ "network", "dir_fc4c7f03e1a69a98c370fae55a743828.html", "dir_fc4c7f03e1a69a98c370fae55a743828" ], [ "polytrope", "dir_a73572e2878bf48cd4731aa58ca46c31.html", "dir_a73572e2878bf48cd4731aa58ca46c31" ], [ "probe", "dir_6bad3e3551706232e4c4a487f3402f33.html", "dir_6bad3e3551706232e4c4a487f3402f33" ], + [ "python", "dir_5c0d64f70903e893b1efe571a4b8de29.html", "dir_5c0d64f70903e893b1efe571a4b8de29" ], [ "resource", "dir_b8641f383bb3a55bd12c64e8208632c3.html", "dir_b8641f383bb3a55bd12c64e8208632c3" ], [ "types", "dir_0c0c9fa8a58db41e576adc3ce68c5ee9.html", "dir_0c0c9fa8a58db41e576adc3ce68c5ee9" ] ]; \ No newline at end of file diff --git a/docs/html/doxygen_crawl.html b/docs/html/doxygen_crawl.html index 529c83c..2caf3b1 100644 --- a/docs/html/doxygen_crawl.html +++ b/docs/html/doxygen_crawl.html @@ -13,7 +13,25 @@ + + + + + + + + + + + + + + + + + + @@ -28,6 +46,9 @@ + + + @@ -99,23 +120,24 @@ - + - - - - - - - - - - - - + + + + + + + + + + + + + @@ -161,8 +183,8 @@ - + @@ -177,6 +199,7 @@ + @@ -290,6 +313,40 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -298,8 +355,8 @@ + - @@ -310,6 +367,16 @@ + + + + + + + + + + @@ -329,6 +396,13 @@ + + + + + + + @@ -344,6 +418,12 @@ + + + + + + @@ -368,10 +448,14 @@ + + + + @@ -379,10 +463,12 @@ + + @@ -397,26 +483,37 @@ + + + + + + + + + - - - - + + + + + + @@ -502,6 +599,8 @@ + + @@ -515,11 +614,69 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -541,29 +698,27 @@ - + - + - - - + - + @@ -608,11 +763,12 @@ + - + @@ -637,6 +793,12 @@ + + + + + + @@ -671,6 +833,8 @@ + + diff --git a/docs/html/files.html b/docs/html/files.html index 0eb0c70..c92be49 100644 --- a/docs/html/files.html +++ b/docs/html/files.html @@ -103,83 +103,116 @@ $(function(){initNavTree('files.html',''); initResizable(true); });
Here is a list of all files with brief descriptions:
-
[detail level 12345]
+
[detail level 12345678]
- - - - + + + + - - - - + + + + - - - - + + + + - - - - - - + + + + + + - - - - + + + + - - - + + + - - - - - - + + + + + + - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -199,8 +232,12 @@ $(function(){initNavTree('files.html',''); initResizable(true); }); - - + + + + + +
 ▼ docs
 static
 ▼ src
 ▼ composition
 ▼ private
 composition.cpp
 ▼ public
 composition.h
 ► private
 ► public
 ▼ config
 ▼ private
 config.cpp
 ▼ public
 config.h
 ► private
 ► public
 ▼ constants
 ▼ private
 const.cpp
 ▼ public
 const.h
 ► private
 ► public
 ▼ eos
 ▼ private
 eosIO.cpp
 helm.cpp
 ▼ public
 eosIO.h
 helm.h
 ► private
 ► public
 ▼ meshIO
 ▼ private
 meshIO.cpp
 ▼ public
 meshIO.h
 ► private
 ► public
 ▼ misc
 ▼ macros
 debug.hDefines a macro for triggering a breakpoint in different compilers and platforms
 warning_control.h
 ► macros
 ▼ network
 ▼ private
 approx8.cpp
 network.cpp
 ▼ public
 approx8.hHeader file for the Approx8 nuclear reaction network
 network.h
 ► private
 ► public
 ▼ polytrope
 ▼ coeff
 ▼ private
 polyCoeff.cpp
 ▼ public
 polyCoeff.h
 ▼ solver
 ▼ private
 polySolver.cpp
 ▼ public
 polySolver.h
 ▼ utils
 ▼ private
 integrators.cpp
 polytropeOperator.cpp
 utilities.cpp
 ▼ public
 integrators.hA collection of utilities for working with MFEM and solving the lane-emden equation
 polytropeOperator.h
 utilities.h
 ► coeff
 ► solver
 ► utils
 ▼ probe
 ▼ private
 probe.cpp
 ▼ public
 probe.h
 ▼ resource
 ▼ private
 resourceManager.cpp
 resourceManagerTypes.cpp
 ▼ public
 resourceManager.h
 resourceManagerTypes.hDefines types and functions for managing resources
 ▼ types
 ▼ public
 4DSTARTypes.h
 ► private
 ► public
 ▼ python
 ► composition
 ► config
 ► const
 ► eos
 ► mfem
 ► polytrope
 ► serif
 bindings.cpp
 ▼ resource
 ► private
 ► public
 ▼ types
 ► public
 ▼ tests
 ▼ composition
 compositionTest.cpp
 polyTest.cpp
 ▼ probe
 probeTest.cpp
 ▼ resource
 resourceManagerTest.cpp
 ▼ python
 ► polytrope
 ▼ resource
 resourceManagerTest.cpp
diff --git a/docs/html/functions.html b/docs/html/functions.html index 7461667..15a54b6 100644 --- a/docs/html/functions.html +++ b/docs/html/functions.html @@ -103,9 +103,12 @@ $(function(){initNavTree('functions.html',''); initResizable(true); });

- a -

diff --git a/docs/html/functions_func.html b/docs/html/functions_func.html index 3811e4a..4ba63a2 100644 --- a/docs/html/functions_func.html +++ b/docs/html/functions_func.html @@ -102,8 +102,11 @@ $(function(){initNavTree('functions_func.html',''); initResizable(true); });
Here is a list of all functions with links to the classes they belong to:

- a -

@@ -133,12 +136,15 @@ $(function(){initNavTree('functions_func.html',''); initResizable(true); });

- e -

- f -

@@ -189,9 +199,10 @@ $(function(){initNavTree('functions_func.html',''); initResizable(true); });

- i -