7df3481ff4
refactor(python/composition): updated python comp bindings to use register model
2025-05-05 12:00:40 -04:00
6bcd9d2e69
build(build-python): added sources for const and global module
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build-python meson.build includes (and must include) all relevant source
2025-05-05 12:00:08 -04:00
1ed0e9cde1
feat(python/const): added constants bindings
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constants module can now be fully accessed from python
2025-05-05 11:59:24 -04:00
2bf58671a0
refactor(python): added global binding module
2025-05-05 11:58:57 -04:00
cf00cc0240
Merge pull request #45 from tboudreaux/feature/pythonInterface/composition
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Python Interface for composition module
2025-04-30 11:57:23 -04:00
ebcd605bf8
test(composition_sandbox): removed config loaded since not needed
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note that this will break (throw runtime errors) the sandbox if it is compiled in a build directory which has had -Dconfig_error_handling=harsh set
2025-04-30 11:49:50 -04:00
9307c398b6
build(config): added compile time option to disable config file load error
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In general we may want to enforce that a config file is explicitly loaded before any access is requested. However, there are times when this is non ideal behavior. We introduce a compile time flag (CONFIG_HARSH, and CONFIG_WARN). If config hars is defined then a runtime error will be thrown if a config value is requested before the config file has been loaded. If Config warn is defined (and config harsh is not) then a warning will be printed, otherwise nothing will happen. If either warn or nothing is defined this means that the default values defined in the get methods will be used.
Note that the meson build system has had an option added -Dconfig_error_handling=["none", "warn", "harsh"] (default="none") which can be used to manage these compile time options. In general release builds should have this disabled while debug builts should have it set to harsh.
2025-04-30 11:48:38 -04:00
91d66ea62e
build(meson): switched almost all intermediate targets to shared libraries
2025-04-30 11:44:53 -04:00
591f62c88d
fix(composition): removed old py structure
2025-04-30 11:41:52 -04:00
4e83b05112
feat(python-composition): added composition module interface
2025-04-30 11:41:10 -04:00
57d60d7bb7
feat(pybind11): added infra to compile with pybind11
2025-04-30 11:39:36 -04:00
9ed4e6f328
Merge pull request #43 from tboudreaux/feature/polytropeOperator
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Feature/polytrope operator
2025-04-25 11:57:34 -04:00
4503ae9906
docs(lane-emden-variation-form-derivation): added derivation write up
2025-04-25 11:41:59 -04:00
56f596500c
feat(poly): added NonlinearPowerIntegrator and PolytropeOperator
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A custom integrator is required to handle the theta^n term in the lane emden equation, that is written as NonlinearPowerIntegrator which is a mfem::NonlinearFormIntegrator and defines methods to assemble its element vector (function value) and element gradient matrix (jacobian). This is then, along with built in mfem vectors for M Q and D, incorporated into the PolytropeOperator which defines methods for Mult (calculate the residuals of the variational form) and GetGradient (find the jacobian of the system)
2025-04-25 11:41:08 -04:00
a2a003efcb
Merge pull request #41 from tboudreaux/feature/meshGeneration
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Feature/mesh generation
2025-04-25 11:22:27 -04:00
e5864ca31e
feat(probe): added glvisview helped method to probe namespace
2025-04-25 11:22:13 -04:00
a3c9983d0c
feat(meshView): added basic mesh view utility
2025-04-25 11:21:16 -04:00
2b3330b4f6
feat(meshIO): added linear rescale capability to meshIO
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loaded meshes can be linearly rescaled (so for example a unit sphere can be rescaled to a sphere of any radius)
2025-04-25 11:13:15 -04:00
9a76c447f1
feat(meshGeneration): added mesh generation scripts and three res of spherical mesh
2025-04-25 11:12:40 -04:00
cac22ab847
Merge pull request #38 from tboudreaux/fix/opatcoremodulename
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fix(resource-manager): fixed old style calls to opat-core
2025-04-25 10:41:30 -04:00
4fd3643d1e
fix(resource-manager): fixed old style calls to opat-core
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tboudreaux:feature/mixedPolytrope implimented a fix to bring old style opat-core calls to the more up to date style. This change has been fast forwarded into main
2025-04-25 10:39:10 -04:00
1d49569182
Merge pull request #35 from tboudreaux/feature/composition
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Added composition module
2025-03-26 11:14:17 -04:00
74766fa97a
Merge pull request #36 from tboudreaux/fix/defaultConfig
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fixed quotes around strings and improper floating point parsing
2025-03-26 10:59:24 -04:00
30990ba868
fix(generateDefaultConfig.py): fixed quotes around strings and improper floating point parsing
2025-03-26 10:56:22 -04:00
adca88c8da
build(mfem.wrap): bumped mfem version to 4.8-rc0
2025-03-26 10:38:16 -04:00
40969d64ba
fix(mfem.wrap): pinned mfem version to 4.7 and set clone depth to 1
2025-03-26 10:19:17 -04:00
7193d3a6ac
test(tests): fixed broken tests
2025-03-26 10:06:10 -04:00
9395b52089
ci(build-and-test): updated workflow to work with new mk script
2025-03-26 09:35:06 -04:00
edd4c04c64
feat(composition): added mix method to combine compositions. Also overloaded the + operator to mix with an assumed fraction of 50/50
2025-03-26 08:07:11 -04:00
0e9a7df381
feat(composition): added ability to change composition modes
2025-03-25 13:01:22 -04:00
941af6331b
test(composition_sandbox): added some sandbox tests
2025-03-25 12:49:52 -04:00
cb33f75e0c
feat(composition): added numberFrac methods and subset method
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Composition can now be placed in either number fraction or mass fraction mode and can (after finalization) convert between them. Subsets of compositions can also be made. Normalization has also been added to finalize. Tests have been added
2025-03-25 12:49:37 -04:00
fe48384339
feat(atomicSpecies.h): regenerated with copy constructor
2025-03-25 12:48:09 -04:00
c753a4ea15
feat(convertWeightsToHeader): added copy constructor
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added copy constructor to generated Species object in generated header
2025-03-25 12:47:46 -04:00
d64202d6c0
docs(composition): updated mass fracs in docs to more realistic values
2025-03-24 13:20:24 -04:00
170bcb085d
build(probe): added probe dependencies to probe_dep
2025-03-24 12:59:43 -04:00
ed443c0aa2
test(tests/composition): added composition tests, atomicSpecies tests, and sandbox
2025-03-24 12:59:17 -04:00
6aa3f90c98
build(composition): added composition module to build
2025-03-24 12:58:49 -04:00
cd022a1f9a
feat(composition): added composition class
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in order to get composition in a standardized way anywhere in the code we now have a composition class
2025-03-24 12:58:30 -04:00
3c3d714702
feat(composition): added composition module stub
2025-03-24 10:41:13 -04:00
9d827f6fa5
refactor(assets): removed redundant assets
2025-03-24 10:40:40 -04:00
d3d9f98d98
feat(atomic-weights): added AME2020 atomic masses
2025-03-24 10:40:13 -04:00
9b07b80dad
feat(convertWeightToHeader): added python script to generate c++ header for isotope weights
2025-03-24 10:39:05 -04:00
8d3db04469
fix(picosha2_dep): moved picosha2_dep managment to opat-core subproject
2025-03-24 05:06:40 -04:00
b88606815a
refactor(opatIO): removed old opatIO code from 4DSSE
2025-03-24 04:59:01 -04:00
ff87585d71
build(opatIO): broke opatIO out into a seperate module
2025-03-24 04:57:18 -04:00
001ddbf055
Merge pull request #34 from tboudreaux/fix/opatIndexError
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Fix floating point round off error when looking up tables by composition
2025-03-22 14:30:09 -04:00
f3e79d9366
feat(opatIO_sandbox): added opatIO sandbox for freeform testing
2025-03-22 14:26:31 -04:00
f6f35996cc
fix(opat): added min tolerance for epsilon in case where there are shared indeices
2025-03-22 14:26:08 -04:00
758ddbc64b
Merge pull request #33 from tboudreaux/fix/opatIndexError
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fix(opatio): fixed global numTables
2025-03-22 07:19:18 -04:00
