57d60d7bb7
feat(pybind11): added infra to compile with pybind11
2025-04-30 11:39:36 -04:00
9ed4e6f328
Merge pull request #43 from tboudreaux/feature/polytropeOperator
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Feature/polytrope operator
2025-04-25 11:57:34 -04:00
4503ae9906
docs(lane-emden-variation-form-derivation): added derivation write up
2025-04-25 11:41:59 -04:00
56f596500c
feat(poly): added NonlinearPowerIntegrator and PolytropeOperator
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A custom integrator is required to handle the theta^n term in the lane emden equation, that is written as NonlinearPowerIntegrator which is a mfem::NonlinearFormIntegrator and defines methods to assemble its element vector (function value) and element gradient matrix (jacobian). This is then, along with built in mfem vectors for M Q and D, incorporated into the PolytropeOperator which defines methods for Mult (calculate the residuals of the variational form) and GetGradient (find the jacobian of the system)
2025-04-25 11:41:08 -04:00
a2a003efcb
Merge pull request #41 from tboudreaux/feature/meshGeneration
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Feature/mesh generation
2025-04-25 11:22:27 -04:00
e5864ca31e
feat(probe): added glvisview helped method to probe namespace
2025-04-25 11:22:13 -04:00
a3c9983d0c
feat(meshView): added basic mesh view utility
2025-04-25 11:21:16 -04:00
2b3330b4f6
feat(meshIO): added linear rescale capability to meshIO
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loaded meshes can be linearly rescaled (so for example a unit sphere can be rescaled to a sphere of any radius)
2025-04-25 11:13:15 -04:00
9a76c447f1
feat(meshGeneration): added mesh generation scripts and three res of spherical mesh
2025-04-25 11:12:40 -04:00
cac22ab847
Merge pull request #38 from tboudreaux/fix/opatcoremodulename
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fix(resource-manager): fixed old style calls to opat-core
2025-04-25 10:41:30 -04:00
4fd3643d1e
fix(resource-manager): fixed old style calls to opat-core
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tboudreaux:feature/mixedPolytrope implimented a fix to bring old style opat-core calls to the more up to date style. This change has been fast forwarded into main
2025-04-25 10:39:10 -04:00
1d49569182
Merge pull request #35 from tboudreaux/feature/composition
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Added composition module
2025-03-26 11:14:17 -04:00
74766fa97a
Merge pull request #36 from tboudreaux/fix/defaultConfig
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fixed quotes around strings and improper floating point parsing
2025-03-26 10:59:24 -04:00
30990ba868
fix(generateDefaultConfig.py): fixed quotes around strings and improper floating point parsing
2025-03-26 10:56:22 -04:00
adca88c8da
build(mfem.wrap): bumped mfem version to 4.8-rc0
2025-03-26 10:38:16 -04:00
40969d64ba
fix(mfem.wrap): pinned mfem version to 4.7 and set clone depth to 1
2025-03-26 10:19:17 -04:00
7193d3a6ac
test(tests): fixed broken tests
2025-03-26 10:06:10 -04:00
9395b52089
ci(build-and-test): updated workflow to work with new mk script
2025-03-26 09:35:06 -04:00
edd4c04c64
feat(composition): added mix method to combine compositions. Also overloaded the + operator to mix with an assumed fraction of 50/50
2025-03-26 08:07:11 -04:00
0e9a7df381
feat(composition): added ability to change composition modes
2025-03-25 13:01:22 -04:00
941af6331b
test(composition_sandbox): added some sandbox tests
2025-03-25 12:49:52 -04:00
cb33f75e0c
feat(composition): added numberFrac methods and subset method
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Composition can now be placed in either number fraction or mass fraction mode and can (after finalization) convert between them. Subsets of compositions can also be made. Normalization has also been added to finalize. Tests have been added
2025-03-25 12:49:37 -04:00
fe48384339
feat(atomicSpecies.h): regenerated with copy constructor
2025-03-25 12:48:09 -04:00
c753a4ea15
feat(convertWeightsToHeader): added copy constructor
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added copy constructor to generated Species object in generated header
2025-03-25 12:47:46 -04:00
d64202d6c0
docs(composition): updated mass fracs in docs to more realistic values
2025-03-24 13:20:24 -04:00
170bcb085d
build(probe): added probe dependencies to probe_dep
2025-03-24 12:59:43 -04:00
ed443c0aa2
test(tests/composition): added composition tests, atomicSpecies tests, and sandbox
2025-03-24 12:59:17 -04:00
6aa3f90c98
build(composition): added composition module to build
2025-03-24 12:58:49 -04:00
cd022a1f9a
feat(composition): added composition class
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in order to get composition in a standardized way anywhere in the code we now have a composition class
2025-03-24 12:58:30 -04:00
3c3d714702
feat(composition): added composition module stub
2025-03-24 10:41:13 -04:00
9d827f6fa5
refactor(assets): removed redundant assets
2025-03-24 10:40:40 -04:00
d3d9f98d98
feat(atomic-weights): added AME2020 atomic masses
2025-03-24 10:40:13 -04:00
9b07b80dad
feat(convertWeightToHeader): added python script to generate c++ header for isotope weights
2025-03-24 10:39:05 -04:00
8d3db04469
fix(picosha2_dep): moved picosha2_dep managment to opat-core subproject
2025-03-24 05:06:40 -04:00
b88606815a
refactor(opatIO): removed old opatIO code from 4DSSE
2025-03-24 04:59:01 -04:00
ff87585d71
build(opatIO): broke opatIO out into a seperate module
2025-03-24 04:57:18 -04:00
001ddbf055
Merge pull request #34 from tboudreaux/fix/opatIndexError
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Fix floating point round off error when looking up tables by composition
2025-03-22 14:30:09 -04:00
f3e79d9366
feat(opatIO_sandbox): added opatIO sandbox for freeform testing
2025-03-22 14:26:31 -04:00
f6f35996cc
fix(opat): added min tolerance for epsilon in case where there are shared indeices
2025-03-22 14:26:08 -04:00
758ddbc64b
Merge pull request #33 from tboudreaux/fix/opatIndexError
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fix(opatio): fixed global numTables
2025-03-22 07:19:18 -04:00
5a8c50d376
fix(opatio): fixed global numTables
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previously there was a global "default header" object which each OpatIO table used to build off of. The issue was that this did a shallow copy so if there were multiple OpatIO objects instantiated they would all modify the same header object. This has been resolved by moving the default header to a function which generates it fresh for each OpatIO object.
2025-03-22 07:13:34 -04:00
a38b6ef980
Merge pull request #31 from tboudreaux/fix/OpacSaveAsAscii
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fix(opat.py): fixed indexing wrong axis in save_as_ascii
2025-03-21 16:25:53 -04:00
7818c7be0a
fix(opat.py): fixed indexing wrong axis in save_as_ascii
2025-03-21 16:24:03 -04:00
c245b3ee80
Merge pull request #29 from tboudreaux/feature/nuclearNetwork
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Added approx8 neuclear network and general nuclear network framework.
2025-03-21 15:03:15 -04:00
528d2f632b
fix(network): fixed missing negative in jacobian energy accounting
2025-03-21 14:46:22 -04:00
59d4c290ba
fix(network): added missing negative sign in energy calculation
2025-03-21 14:44:35 -04:00
3109c198cf
refactor(network): removed unused phoenix dependency and defauled stiff=false to use explicit solver
2025-03-21 14:35:18 -04:00
8fa950835d
test(network): added approx8 network tests
2025-03-21 14:03:46 -04:00
7c40db4b09
feat(approx8-network-integrated): added network handleing semantics and incorporated the approx8 network into them
2025-03-21 14:03:18 -04:00
Aaron Dotter
c58bd50f01
refactor(network) Added header file
2025-03-21 12:08:40 -04:00
