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Emily Boudreaux
2025-06-11 14:50:33 -04:00
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@@ -103,59 +103,59 @@ $(function(){initNavTree('annotated.html',''); initResizable(true); });
</div><!--header-->
<div class="contents">
<div class="textblock">Here are the classes, structs, unions and interfaces with brief descriptions:</div><div class="directory">
<div class="levels">[detail level <span onclick="javascript:dynsection.toggleLevel(1);">1</span><span onclick="javascript:dynsection.toggleLevel(2);">2</span>]</div><table class="directory">
<tr id="row_0_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_0_" class="arrow" onclick="dynsection.toggleFolder('0_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacecomposition.html" target="_self">composition</a></td><td class="desc"></td></tr>
<tr id="row_0_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classcomposition_1_1_composition.html" target="_self">Composition</a></td><td class="desc"></td></tr>
<tr id="row_0_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structcomposition_1_1_composition_entry.html" target="_self">CompositionEntry</a></td><td class="desc">Represents an entry in the composition with a symbol and mass fraction </td></tr>
<tr id="row_0_2_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structcomposition_1_1_global_composition.html" target="_self">GlobalComposition</a></td><td class="desc">Represents the global composition of a system. This tends to be used after finalize and is primarily for internal use </td></tr>
<tr id="row_1_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_1_" class="arrow" onclick="dynsection.toggleFolder('1_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacehelmholtz.html" target="_self">helmholtz</a></td><td class="desc"></td></tr>
<tr id="row_1_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structhelmholtz_1_1_e_o_s.html" target="_self">EOS</a></td><td class="desc">Structure to hold the output parameters and derivatives of the <a class="el" href="structhelmholtz_1_1_e_o_s.html" title="Structure to hold the output parameters and derivatives of the EOS calculation.">EOS</a> calculation </td></tr>
<tr id="row_1_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structhelmholtz_1_1_e_o_s_input.html" target="_self">EOSInput</a></td><td class="desc">Structure to hold the input parameters for the <a class="el" href="structhelmholtz_1_1_e_o_s.html" title="Structure to hold the output parameters and derivatives of the EOS calculation.">EOS</a> calculation </td></tr>
<tr id="row_1_2_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structhelmholtz_1_1_h_e_l_m_table.html" target="_self">HELMTable</a></td><td class="desc">Structure to hold the Helmholtz <a class="el" href="structhelmholtz_1_1_e_o_s.html" title="Structure to hold the output parameters and derivatives of the EOS calculation.">EOS</a> table data </td></tr>
<tr id="row_2_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_2_" class="arrow" onclick="dynsection.toggleFolder('2_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacenn_approx8.html" target="_self">nnApprox8</a></td><td class="desc"></td></tr>
<tr id="row_2_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classnn_approx8_1_1_approx8_network.html" target="_self">Approx8Network</a></td><td class="desc">Class for the Approx8 nuclear reaction network </td></tr>
<tr id="row_2_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structnn_approx8_1_1_jacobian.html" target="_self">Jacobian</a></td><td class="desc">Functor to calculate the <a class="el" href="structnn_approx8_1_1_jacobian.html" title="Functor to calculate the Jacobian matrix for implicit solvers.">Jacobian</a> matrix for implicit solvers </td></tr>
<tr id="row_2_2_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structnn_approx8_1_1_net.html" target="_self">Net</a></td><td class="desc">Contains constants and arrays related to the nuclear network </td></tr>
<tr id="row_2_3_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structnn_approx8_1_1_o_d_e.html" target="_self">ODE</a></td><td class="desc">Functor to calculate the derivatives for the <a class="el" href="structnn_approx8_1_1_o_d_e.html" title="Functor to calculate the derivatives for the ODE solver.">ODE</a> solver </td></tr>
<tr id="row_3_" class="odd"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_3_" class="arrow" onclick="dynsection.toggleFolder('3_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacenuclear_network.html" target="_self">nuclearNetwork</a></td><td class="desc"></td></tr>
<tr id="row_3_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structnuclear_network_1_1_net_in.html" target="_self">NetIn</a></td><td class="desc">Input structure for the network evaluation </td></tr>
<tr id="row_3_1_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structnuclear_network_1_1_net_out.html" target="_self">NetOut</a></td><td class="desc">Output structure for the network evaluation </td></tr>
<tr id="row_3_2_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classnuclear_network_1_1_network.html" target="_self">Network</a></td><td class="desc">Class for network evaluation </td></tr>
<tr id="row_4_" class="odd"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_4_" class="arrow" onclick="dynsection.toggleFolder('4_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacepolycoeff.html" target="_self">polycoeff</a></td><td class="desc"></td></tr>
<tr id="row_4_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structpolycoeff_1_1d_theta_interp_coeff.html" target="_self">dThetaInterpCoeff</a></td><td class="desc"></td></tr>
<tr id="row_4_1_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structpolycoeff_1_1x1_interp_coeff.html" target="_self">x1InterpCoeff</a></td><td class="desc">Coefficients for the interpolations of the surface location of a polytrope </td></tr>
<tr id="row_5_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_5_" class="arrow" onclick="dynsection.toggleFolder('5_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacepoly_m_f_e_m_utils.html" target="_self">polyMFEMUtils</a></td><td class="desc">A namespace for utilities for working with MFEM and solving the lane-emden equation </td></tr>
<tr id="row_5_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classpoly_m_f_e_m_utils_1_1_nonlinear_power_integrator.html" target="_self">NonlinearPowerIntegrator</a></td><td class="desc">A class for nonlinear power integrator </td></tr>
<tr id="row_6_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_6_" class="arrow" onclick="dynsection.toggleFolder('6_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespace_probe.html" target="_self">Probe</a></td><td class="desc">The <a class="el" href="namespace_probe.html" title="The Probe namespace contains utility functions for debugging and logging.">Probe</a> namespace contains utility functions for debugging and logging </td></tr>
<tr id="row_6_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_probe_1_1_log_manager.html" target="_self">LogManager</a></td><td class="desc">Class to manage logging operations </td></tr>
<tr id="row_7_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classapprox8_test.html" target="_self">approx8Test</a></td><td class="desc"></td></tr>
<tr id="row_8_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classcomposition_test.html" target="_self">compositionTest</a></td><td class="desc">Test suite for the composition class </td></tr>
<tr id="row_9_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_config.html" target="_self">Config</a></td><td class="desc">Singleton class to manage configuration settings loaded from a YAML file </td></tr>
<tr id="row_10_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classconfig_test.html" target="_self">configTest</a></td><td class="desc">Test suite for the <a class="el" href="class_config.html" title="Singleton class to manage configuration settings loaded from a YAML file.">Config</a> class </td></tr>
<tr id="row_11_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classconfig_test_private_accessor.html" target="_self">configTestPrivateAccessor</a></td><td class="desc"></td></tr>
<tr id="row_12_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="struct_constant.html" target="_self">Constant</a></td><td class="desc">Structure to hold a constant's details </td></tr>
<tr id="row_13_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_constants.html" target="_self">Constants</a></td><td class="desc">Class to manage a collection of constants </td></tr>
<tr id="row_14_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classconst_test.html" target="_self">constTest</a></td><td class="desc">Test suite for the const class </td></tr>
<tr id="row_15_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_d_object.html" target="_self">DObject</a></td><td class="desc">A universal data container class </td></tr>
<tr id="row_16_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_d_object_test.html" target="_self">DObjectTest</a></td><td class="desc">Test suite for the <a class="el" href="class_d_object.html" title="A universal data container class.">DObject</a> class </td></tr>
<tr id="row_17_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_eos_i_o.html" target="_self">EosIO</a></td><td class="desc">Handles the input/output operations for EOS tables </td></tr>
<tr id="row_18_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classeos_test.html" target="_self">eosTest</a></td><td class="desc">Test suite for the const class </td></tr>
<tr id="row_19_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structform_bundle.html" target="_self">formBundle</a></td><td class="desc">Structure to hold the various bilinear and nonlinear forms for the polytrope problem </td></tr>
<tr id="row_20_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_g_m_r_e_s_inverter.html" target="_self">GMRESInverter</a></td><td class="desc">Provides an approximate inverse of the <a class="el" href="class_schur_compliment.html" title="Represents the Schur complement operator used in the solution process.">SchurCompliment</a> operator using GMRES </td></tr>
<tr id="row_21_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_lockable_d_object.html" target="_self">LockableDObject</a></td><td class="desc">Wrapper for <a class="el" href="class_d_object.html" title="A universal data container class.">DObject</a> with thread-safe access </td></tr>
<tr id="row_22_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_lockable_d_object_test.html" target="_self">LockableDObjectTest</a></td><td class="desc">Test suite for the <a class="el" href="class_lockable_d_object.html" title="Wrapper for DObject with thread-safe access.">LockableDObject</a> class </td></tr>
<tr id="row_23_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_mesh_i_o.html" target="_self">MeshIO</a></td><td class="desc">Class for handling mesh input/output operations </td></tr>
<tr id="row_24_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classmesh_i_o_test.html" target="_self">meshIOTest</a></td><td class="desc"></td></tr>
<tr id="row_25_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_metadata.html" target="_self">Metadata</a></td><td class="desc">Represents metadata information for data objects in the dobj module </td></tr>
<tr id="row_26_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_metadata_test.html" target="_self">MetadataTest</a></td><td class="desc">Test suite for the <a class="el" href="class_metadata.html" title="Represents metadata information for data objects in the dobj module.">Metadata</a> class </td></tr>
<tr id="row_27_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_poly_solver.html" target="_self">PolySolver</a></td><td class="desc">Solves the Lane-Emden equation for a polytropic star using a mixed finite element method </td></tr>
<tr id="row_28_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classpoly_test.html" target="_self">polyTest</a></td><td class="desc"></td></tr>
<tr id="row_29_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_polytrope_operator.html" target="_self">PolytropeOperator</a></td><td class="desc">Represents the coupled nonlinear operator for the polytropic system </td></tr>
<tr id="row_30_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classprobe_test.html" target="_self">probeTest</a></td><td class="desc"></td></tr>
<tr id="row_31_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_resource_manager.html" target="_self">ResourceManager</a></td><td class="desc">Manages resources within the application </td></tr>
<tr id="row_32_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classresource_manager_test.html" target="_self">resourceManagerTest</a></td><td class="desc">Test suite for the resourceManager class </td></tr>
<tr id="row_33_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_schur_compliment.html" target="_self">SchurCompliment</a></td><td class="desc">Represents the Schur complement operator used in the solution process </td></tr>
<tr id="row_34_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsolver_bundle.html" target="_self">solverBundle</a></td><td class="desc">Structure to manage the lifetime of MFEM solver objects </td></tr>
<div class="levels">[detail level <span onclick="javascript:dynsection.toggleLevel(1);">1</span><span onclick="javascript:dynsection.toggleLevel(2);">2</span><span onclick="javascript:dynsection.toggleLevel(3);">3</span><span onclick="javascript:dynsection.toggleLevel(4);">4</span>]</div><table class="directory">
<tr id="row_0_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_0_" class="arrow" onclick="dynsection.toggleFolder('0_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceserif.html" target="_self">serif</a></td><td class="desc"></td></tr>
<tr id="row_0_0_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_0_" class="arrow" onclick="dynsection.toggleFolder('0_0_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceserif_1_1composition.html" target="_self">composition</a></td><td class="desc"></td></tr>
<tr id="row_0_0_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1composition_1_1_composition.html" target="_self">Composition</a></td><td class="desc"></td></tr>
<tr id="row_0_0_1_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1composition_1_1_composition_entry.html" target="_self">CompositionEntry</a></td><td class="desc">Represents an entry in the composition with a symbol and mass fraction </td></tr>
<tr id="row_0_0_2_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1composition_1_1_global_composition.html" target="_self">GlobalComposition</a></td><td class="desc">Represents the global composition of a system. This tends to be used after finalize and is primarily for internal use </td></tr>
<tr id="row_0_1_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_1_" class="arrow" onclick="dynsection.toggleFolder('0_1_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceserif_1_1constant.html" target="_self">constant</a></td><td class="desc"></td></tr>
<tr id="row_0_1_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1constant_1_1_constant.html" target="_self">Constant</a></td><td class="desc">Structure to hold a constant's details </td></tr>
<tr id="row_0_1_1_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1constant_1_1_constants.html" target="_self">Constants</a></td><td class="desc">Class to manage a collection of constants </td></tr>
<tr id="row_0_2_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_2_" class="arrow" onclick="dynsection.toggleFolder('0_2_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceserif_1_1eos.html" target="_self">eos</a></td><td class="desc"></td></tr>
<tr id="row_0_2_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_2_0_" class="arrow" onclick="dynsection.toggleFolder('0_2_0_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceserif_1_1eos_1_1helmholtz.html" target="_self">helmholtz</a></td><td class="desc"></td></tr>
<tr id="row_0_2_0_0_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_e_o_s.html" target="_self">EOS</a></td><td class="desc">Structure to hold the output parameters and derivatives of the <a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_e_o_s.html" title="Structure to hold the output parameters and derivatives of the EOS calculation.">EOS</a> calculation </td></tr>
<tr id="row_0_2_0_1_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_e_o_s_input.html" target="_self">EOSInput</a></td><td class="desc">Structure to hold the input parameters for the <a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_e_o_s.html" title="Structure to hold the output parameters and derivatives of the EOS calculation.">EOS</a> calculation </td></tr>
<tr id="row_0_2_0_2_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_h_e_l_m_table.html" target="_self">HELMTable</a></td><td class="desc">Structure to hold the Helmholtz <a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_e_o_s.html" title="Structure to hold the output parameters and derivatives of the EOS calculation.">EOS</a> table data </td></tr>
<tr id="row_0_2_1_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1eos_1_1_eos_i_o.html" target="_self">EosIO</a></td><td class="desc">Handles the input/output operations for EOS tables </td></tr>
<tr id="row_0_3_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_3_" class="arrow" onclick="dynsection.toggleFolder('0_3_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceserif_1_1mesh.html" target="_self">mesh</a></td><td class="desc"></td></tr>
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<tr id="row_0_4_0_0_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1network_1_1approx8_1_1_approx8_network.html" target="_self">Approx8Network</a></td><td class="desc">Class for the Approx8 nuclear reaction network </td></tr>
<tr id="row_0_4_0_1_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1network_1_1approx8_1_1_jacobian.html" target="_self">Jacobian</a></td><td class="desc">Functor to calculate the <a class="el" href="structserif_1_1network_1_1approx8_1_1_jacobian.html" title="Functor to calculate the Jacobian matrix for implicit solvers.">Jacobian</a> matrix for implicit solvers </td></tr>
<tr id="row_0_4_0_2_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1network_1_1approx8_1_1_net.html" target="_self">Net</a></td><td class="desc">Contains constants and arrays related to the nuclear network </td></tr>
<tr id="row_0_4_0_3_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1network_1_1approx8_1_1_o_d_e.html" target="_self">ODE</a></td><td class="desc">Functor to calculate the derivatives for the <a class="el" href="structserif_1_1network_1_1approx8_1_1_o_d_e.html" title="Functor to calculate the derivatives for the ODE solver.">ODE</a> solver </td></tr>
<tr id="row_0_4_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1network_1_1_net_in.html" target="_self">NetIn</a></td><td class="desc">Input structure for the network evaluation </td></tr>
<tr id="row_0_4_2_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1network_1_1_net_out.html" target="_self">NetOut</a></td><td class="desc">Output structure for the network evaluation </td></tr>
<tr id="row_0_4_3_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1network_1_1_network.html" target="_self">Network</a></td><td class="desc">Class for network evaluation </td></tr>
<tr id="row_0_5_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_5_" class="arrow" onclick="dynsection.toggleFolder('0_5_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceserif_1_1polytrope.html" target="_self">polytrope</a></td><td class="desc"></td></tr>
<tr id="row_0_5_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_5_0_" class="arrow" onclick="dynsection.toggleFolder('0_5_0_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceserif_1_1polytrope_1_1polycoeff.html" target="_self">polycoeff</a></td><td class="desc"></td></tr>
<tr id="row_0_5_0_0_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1polytrope_1_1polycoeff_1_1d_theta_interp_coeff.html" target="_self">dThetaInterpCoeff</a></td><td class="desc"></td></tr>
<tr id="row_0_5_0_1_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1polytrope_1_1polycoeff_1_1x1_interp_coeff.html" target="_self">x1InterpCoeff</a></td><td class="desc">Coefficients for the interpolations of the surface location of a polytrope </td></tr>
<tr id="row_0_5_1_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_5_1_" class="arrow" onclick="dynsection.toggleFolder('0_5_1_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceserif_1_1polytrope_1_1poly_m_f_e_m_utils.html" target="_self">polyMFEMUtils</a></td><td class="desc"></td></tr>
<tr id="row_0_5_1_0_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1polytrope_1_1poly_m_f_e_m_utils_1_1_nonlinear_power_integrator.html" target="_self">NonlinearPowerIntegrator</a></td><td class="desc">A class for nonlinear power integrator </td></tr>
<tr id="row_0_5_2_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1polytrope_1_1form_bundle.html" target="_self">formBundle</a></td><td class="desc">Structure to hold the various bilinear and nonlinear forms for the polytrope problem </td></tr>
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<tr id="row_0_5_4_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html" target="_self">PolySolver</a></td><td class="desc">Solves the Lane-Emden equation for a polytropic star using a mixed finite element method </td></tr>
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<tr id="row_0_5_6_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1polytrope_1_1_schur_compliment.html" target="_self">SchurCompliment</a></td><td class="desc">Represents the Schur complement operator used in the solution process </td></tr>
<tr id="row_0_5_7_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structserif_1_1polytrope_1_1solver_bundle.html" target="_self">solverBundle</a></td><td class="desc">Structure to manage the lifetime of MFEM solver objects </td></tr>
<tr id="row_0_6_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_6_" class="arrow" onclick="dynsection.toggleFolder('0_6_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceserif_1_1probe.html" target="_self">probe</a></td><td class="desc">The Probe namespace contains utility functions for debugging and logging </td></tr>
<tr id="row_0_6_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1probe_1_1_log_manager.html" target="_self">LogManager</a></td><td class="desc">Class to manage logging operations </td></tr>
<tr id="row_0_7_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_7_" class="arrow" onclick="dynsection.toggleFolder('0_7_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceserif_1_1resource.html" target="_self">resource</a></td><td class="desc"></td></tr>
<tr id="row_0_7_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classserif_1_1resource_1_1_resource_manager.html" target="_self">ResourceManager</a></td><td class="desc"></td></tr>
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<tr id="row_3_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classconfig_test.html" target="_self">configTest</a></td><td class="desc">Test suite for the Config class </td></tr>
<tr id="row_4_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classconfig_test_private_accessor.html" target="_self">configTestPrivateAccessor</a></td><td class="desc"></td></tr>
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<tr id="row_7_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classmesh_i_o_test.html" target="_self">meshIOTest</a></td><td class="desc"></td></tr>
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<tr id="row_11_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classresource_manager_test.html" target="_self">resourceManagerTest</a></td><td class="desc">Test suite for the resourceManager class </td></tr>
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</div><!-- directory -->
</div><!-- contents -->

104
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32
docs/html/classes.html
View File

@@ -106,52 +106,52 @@ $(function(){initNavTree('classes.html',''); initResizable(true); });
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<tr id="row_2_10_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><a href="probe_test_8cpp_source.html"><span class="icondoc"></span></a><a class="el" href="probe_test_8cpp.html" target="_self">probeTest.cpp</a></td><td class="desc"></td></tr>
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</div><!-- directory -->
</div><!-- contents -->

12
docs/html/functions.html
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<div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
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<li>assembleBlockSystem()&#160;:&#160;<a class="el" href="class_poly_solver.html#afe38ca0ba610c352f1b8b9463bff947c">PolySolver</a></li>
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<li>AssembleElementVector()&#160;:&#160;<a class="el" href="classpoly_m_f_e_m_utils_1_1_nonlinear_power_integrator.html#a4999e49e957ccb3900be9b04466bca5b">polyMFEMUtils::NonlinearPowerIntegrator</a></li>
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<li>assembleAndFinalizeForm()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a3d7ed2ad970e24927cb13ea2e4ae572f">serif::polytrope::PolySolver</a></li>
<li>assembleBlockSystem()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a8b6283e2d865e2941d314e6155c558b8">serif::polytrope::PolySolver</a></li>
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</ul>
</div><!-- contents -->
</div><!-- doc-content -->

291
docs/html/functions_func.html
View File

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</ul>
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</ul>
<h3><a id="index_c" name="index_c"></a>- c -</h3><ul>
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<li>computeBlockOffsets()&#160;:&#160;<a class="el" href="class_poly_solver.html#ad69d4ff9b5b56e0654f8e082a210c613">PolySolver</a></li>
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<li>construct_matrix_representations()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#a0a22ba7589125309e40cbf8180404e5a">PolytropeOperator</a></li>
<li>construct_reduced_block_offsets()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#a961d9dc73ba632e20266ede59c9503c2">PolytropeOperator</a></li>
<li>convert_netIn()&#160;:&#160;<a class="el" href="classnn_approx8_1_1_approx8_network.html#af6bd9b6c9b4c3f344ae6b8fcce1b3659">nnApprox8::Approx8Network</a></li>
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<li>callAddToCache()&#160;:&#160;<a class="el" href="classconfig_test_private_accessor.html#a17b572a5d4c9d980d0a8cc59aafd4a7d">configTestPrivateAccessor</a></li>
<li>callCacheSize()&#160;:&#160;<a class="el" href="classconfig_test_private_accessor.html#ad255c2b4d2ed83c38ddb3b01bfc7699e">configTestPrivateAccessor</a></li>
<li>callIsKeyInCache()&#160;:&#160;<a class="el" href="classconfig_test_private_accessor.html#a9ed85386d1877a4c842a1e4de6ca94c4">configTestPrivateAccessor</a></li>
<li>callRegisterKeyNotFound()&#160;:&#160;<a class="el" href="classconfig_test_private_accessor.html#a5de5045126d1a03e462556e7bc314503">configTestPrivateAccessor</a></li>
<li>CheckIfKeyUnknown()&#160;:&#160;<a class="el" href="classconfig_test_private_accessor.html#a2e64c804b2c7a25f250e8e178e479550">configTestPrivateAccessor</a></li>
<li>Composition()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a4d6440dcd749d9f8e5d83ca85878311c">serif::composition::Composition</a></li>
<li>CompositionEntry()&#160;:&#160;<a class="el" href="structserif_1_1composition_1_1_composition_entry.html#ab19c35239824ec2e6b8fedd4f93fe59e">serif::composition::CompositionEntry</a></li>
<li>computeBlockOffsets()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a3e23e4843b735dcf23782e5273004930">serif::polytrope::PolySolver</a></li>
<li>Constant()&#160;:&#160;<a class="el" href="structserif_1_1constant_1_1_constant.html#a065affdd5f1deef4c743a9fd2075e869">serif::constant::Constant</a></li>
<li>Constants()&#160;:&#160;<a class="el" href="classserif_1_1constant_1_1_constants.html#af27bfe943a6d02ea9a4740e1c015c705">serif::constant::Constants</a></li>
<li>construct_jacobian_constant_terms()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#ad0f1686571720135c2bd6bf7c906de9c">serif::polytrope::PolytropeOperator</a></li>
<li>construct_matrix_representations()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a9b8a2515a9cd420823b8783565457554">serif::polytrope::PolytropeOperator</a></li>
<li>construct_reduced_block_offsets()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a44dd22d256274552a4e2a062a556607a">serif::polytrope::PolytropeOperator</a></li>
<li>convert_netIn()&#160;:&#160;<a class="el" href="classserif_1_1network_1_1approx8_1_1_approx8_network.html#a2578a3fa5f1ad880d8bede87ed6b8460">serif::network::approx8::Approx8Network</a></li>
</ul>
<h3><a id="index_e" name="index_e"></a>- e -</h3><ul>
<li>EosIO()&#160;:&#160;<a class="el" href="class_eos_i_o.html#ad721f72b591f1ef4b7fa87668e8d8b34">EosIO</a></li>
<li>evaluate()&#160;:&#160;<a class="el" href="classnn_approx8_1_1_approx8_network.html#a31b8a20338d18123eca6e644f6e72366">nnApprox8::Approx8Network</a>, <a class="el" href="classnuclear_network_1_1_network.html#aaa7fe5e69bd45e268c815aa8919966f1">nuclearNetwork::Network</a></li>
<li>EosIO()&#160;:&#160;<a class="el" href="classserif_1_1eos_1_1_eos_i_o.html#afd7bfc464ba6dfdbc15750f500656e0a">serif::eos::EosIO</a></li>
<li>evaluate()&#160;:&#160;<a class="el" href="classserif_1_1network_1_1approx8_1_1_approx8_network.html#a1b592b4dd76a2a0a62dbc21a66869cef">serif::network::approx8::Approx8Network</a>, <a class="el" href="classserif_1_1network_1_1_network.html#a1fbbd504511f4e20074f47063d99db59">serif::network::Network</a></li>
</ul>
<h3><a id="index_f" name="index_f"></a>- f -</h3><ul>
<li>finalize()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#a5547fe9d6154e10a7406d8a06d969462">composition::Composition</a>, <a class="el" href="class_polytrope_operator.html#ac7ebc4ae1c34e1569281be028e4daec1">PolytropeOperator</a></li>
<li>finalizeMassFracMode()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#ae2b5392ad8acd0ab8e17d8452b35aa86">composition::Composition</a></li>
<li>finalizeNumberFracMode()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#a8a3aec6d7f2f6cb4f91105740c15ffc8">composition::Composition</a></li>
<li>findCenterElement()&#160;:&#160;<a class="el" href="class_poly_solver.html#a77455ce3505d93f7b5b5d3e9447bbe23">PolySolver</a></li>
<li>finalize()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a8308d68b06dd878c88b2b811583b506a">serif::composition::Composition</a>, <a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a25e32d09fd447b067a6d4eafbce7b855">serif::polytrope::PolytropeOperator</a></li>
<li>finalizeMassFracMode()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a452328138249daff620a1456492053bf">serif::composition::Composition</a></li>
<li>finalizeNumberFracMode()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a93ef21072ce2c887dee25a98ef62f392">serif::composition::Composition</a></li>
<li>findCenterElement()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#aa6c616ae4ea0dafd3dc92860ae2bf247">serif::polytrope::PolySolver</a></li>
</ul>
<h3><a id="index_g" name="index_g"></a>- g -</h3><ul>
<li>get()&#160;:&#160;<a class="el" href="class_constants.html#a36ddd7fe6857d1bbf6d1c84d4ed7bc19">Constants</a>, <a class="el" href="class_lockable_d_object.html#adcfe201fc728cc1c6fcf638a566ba9a1">LockableDObject</a></li>
<li>get_block_offsets()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#a2a7f200a45cff11897470de39a302f93">PolytropeOperator</a></li>
<li>get_essential_true_dofs()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#a1bf3ced83363a1318258ae0f5bfeb57e">PolytropeOperator</a></li>
<li>get_free_dofs()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#ab5577c71be2bdb0f82daefd2631b8cb1">PolytropeOperator</a></li>
<li>get_jacobian_operator()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#ac05cd1bd6b0a2b2502af9d8a6b86077c">PolytropeOperator</a></li>
<li>get_preconditioner()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#a7789efbb8ba3a09a0975475518b4b611">PolytropeOperator</a></li>
<li>get_reduced_block_offsets()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#acc69c13a7178c25af2ff5c339cbb1c67">PolytropeOperator</a></li>
<li>get_reduced_system_size()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#afbcb03cce5e5da376163a7dd89216400">PolytropeOperator</a></li>
<li>getAvaliableResources()&#160;:&#160;<a class="el" href="class_resource_manager.html#a77243baf9aa96d5f3c1635f8a34b48b5">ResourceManager</a></li>
<li>getByteSize()&#160;:&#160;<a class="el" href="class_metadata.html#ac7980d1efdd6ae434f0115f83d08348e">Metadata</a></li>
<li>getComposition()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#a41df148cfdc1253a87f64c8874763e80">composition::Composition</a></li>
<li>getData()&#160;:&#160;<a class="el" href="class_d_object.html#a4862655c3634d019b0a45b811d6f7235">DObject</a></li>
<li>getDataAs()&#160;:&#160;<a class="el" href="class_d_object.html#aca2db093c1c8c6f7893de07544aed619">DObject</a></li>
<li>getDataType()&#160;:&#160;<a class="el" href="class_metadata.html#aeed7f22ccc61d9a3d6425441d381dcdc">Metadata</a></li>
<li>getDimensions()&#160;:&#160;<a class="el" href="class_metadata.html#a412c0c0b8754d85f9edbbdcd637f3b20">Metadata</a></li>
<li>GetDofCoordinates()&#160;:&#160;<a class="el" href="class_poly_solver.html#ae80ad90a3f632683e38ae03cb4b8e12b">PolySolver</a></li>
<li>getErrorCode()&#160;:&#160;<a class="el" href="class_d_object.html#afa8926d916081de72478cb8813c25e98">DObject</a></li>
<li>getEssentialTrueDof()&#160;:&#160;<a class="el" href="class_poly_solver.html#a45cc1921d9e385b31406b00d750d9a8b">PolySolver</a></li>
<li>getFormat()&#160;:&#160;<a class="el" href="class_eos_i_o.html#add10f91411e996844a14979d12d107b7">EosIO</a></li>
<li>GetGradient()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#af0324f7a83083306158bb8740fdf4379">PolytropeOperator</a></li>
<li>getInstance()&#160;:&#160;<a class="el" href="class_constants.html#ab302ea5420378c55a9e5f116d19ae0e2">Constants</a>, <a class="el" href="class_probe_1_1_log_manager.html#adddabc01655308e7e62d8d3bd1b15386">Probe::LogManager</a>, <a class="el" href="class_resource_manager.html#ad4dd8ab7ad458929de4a60128079af98">ResourceManager</a></li>
<li>getLogger()&#160;:&#160;<a class="el" href="class_probe_1_1_log_manager.html#a5a12a541a9a7ca7f848ff385fb729c1d">Probe::LogManager</a></li>
<li>getLoggerNames()&#160;:&#160;<a class="el" href="class_probe_1_1_log_manager.html#a91daa688d52850bcf857fe638e9f421d">Probe::LogManager</a></li>
<li>getLoggers()&#160;:&#160;<a class="el" href="class_probe_1_1_log_manager.html#a627ffe6b758ad69e77a7033f28bd7dbd">Probe::LogManager</a></li>
<li>getMassFracMode()&#160;:&#160;<a class="el" href="structcomposition_1_1_composition_entry.html#aa715e35857d200dd69a0e777afb312e0">composition::CompositionEntry</a></li>
<li>getMassFraction()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#a205d51c7455bdf7069de1794315954aa">composition::Composition</a></li>
<li>GetMesh()&#160;:&#160;<a class="el" href="class_mesh_i_o.html#a12d2876be0d000aaaa6e5cd6d6a758af">MeshIO</a></li>
<li>getMesh()&#160;:&#160;<a class="el" href="class_poly_solver.html#a7959fe89ce2753b262f1e5b1a1b7fd4e">PolySolver</a></li>
<li>getN()&#160;:&#160;<a class="el" href="class_poly_solver.html#afdb769d3ee9e0929c16a68eb71630f23">PolySolver</a></li>
<li>getNumberFraction()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#aa75453fd563e3f50dee316879df01968">composition::Composition</a></li>
<li>getOrder()&#160;:&#160;<a class="el" href="class_poly_solver.html#aea184d88d7c450b03682f61565541d72">PolySolver</a></li>
<li>getRegisteredSymbols()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#affaeabe495474b82951786591ead8026">composition::Composition</a></li>
<li>getResource()&#160;:&#160;<a class="el" href="class_resource_manager.html#a203619e5da7f2bef6cbe13326d41eda4">ResourceManager</a></li>
<li>getSolution()&#160;:&#160;<a class="el" href="class_poly_solver.html#aa2baea44320e302f543ed6fad5e0d6a2">PolySolver</a></li>
<li>getTable()&#160;:&#160;<a class="el" href="class_eos_i_o.html#ad7484ed459d8479381f4fb288597cbeb">EosIO</a></li>
<li>GMRESInverter()&#160;:&#160;<a class="el" href="class_g_m_r_e_s_inverter.html#a58b277d5a3e5882eb1844db328e60c7a">GMRESInverter</a></li>
<li>get()&#160;:&#160;<a class="el" href="classserif_1_1constant_1_1_constants.html#af31ca8c845765f54641735316f36b4b5">serif::constant::Constants</a></li>
<li>get_block_offsets()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a99a7d2d6631344c04e18068c0fa8cc5b">serif::polytrope::PolytropeOperator</a></li>
<li>get_essential_true_dofs()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a845cae6df0e574657fb7b15496fd2ade">serif::polytrope::PolytropeOperator</a></li>
<li>get_free_dofs()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a637dbe63b37d5a6089c39830eec7e488">serif::polytrope::PolytropeOperator</a></li>
<li>get_jacobian_operator()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a7b968c4dc7d338e36b75fc3efd1114b2">serif::polytrope::PolytropeOperator</a></li>
<li>get_preconditioner()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#ac323a14e8f4bf5afcd85a0b802ca72cf">serif::polytrope::PolytropeOperator</a></li>
<li>get_reduced_block_offsets()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#aa3ac1b125083008e5a465caa6db4bd04">serif::polytrope::PolytropeOperator</a></li>
<li>get_reduced_system_size()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a94e582b0aeac97aff16b63db0a8137b2">serif::polytrope::PolytropeOperator</a></li>
<li>getAvaliableResources()&#160;:&#160;<a class="el" href="classserif_1_1resource_1_1_resource_manager.html#a77243baf9aa96d5f3c1635f8a34b48b5">serif::resource::ResourceManager</a></li>
<li>getComposition()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a7fb0a21428bd55ce156f17d19d10a557">serif::composition::Composition</a></li>
<li>GetDofCoordinates()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a3d70b1098484fa1b0b384d291610d07c">serif::polytrope::PolySolver</a></li>
<li>getEssentialTrueDof()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a26e30f4424c746dbda63b387674dbf26">serif::polytrope::PolySolver</a></li>
<li>getFormat()&#160;:&#160;<a class="el" href="classserif_1_1eos_1_1_eos_i_o.html#a58c3fd6063593fa14eaad85340b82d3d">serif::eos::EosIO</a></li>
<li>GetGradient()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a55d3e6dd6037eed30f3ebf52ca2d2a80">serif::polytrope::PolytropeOperator</a></li>
<li>getInstance()&#160;:&#160;<a class="el" href="classserif_1_1constant_1_1_constants.html#a9f5ea958e59c0cc3a09760d65199a3d8">serif::constant::Constants</a>, <a class="el" href="classserif_1_1probe_1_1_log_manager.html#a78db97bdbb72254855501677b18bc67e">serif::probe::LogManager</a>, <a class="el" href="classserif_1_1resource_1_1_resource_manager.html#a70b5ce13f2b169ccdaa23f73ad070bf0">serif::resource::ResourceManager</a></li>
<li>getLogger()&#160;:&#160;<a class="el" href="classserif_1_1probe_1_1_log_manager.html#a1dba1bc242c599c42c4882e5ab35c431">serif::probe::LogManager</a></li>
<li>getLoggerNames()&#160;:&#160;<a class="el" href="classserif_1_1probe_1_1_log_manager.html#a98d6bf86e6d7e6948f91ae4786b94940">serif::probe::LogManager</a></li>
<li>getLoggers()&#160;:&#160;<a class="el" href="classserif_1_1probe_1_1_log_manager.html#a64dc9652f8e060750c3f6c97d9d62047">serif::probe::LogManager</a></li>
<li>getMassFracMode()&#160;:&#160;<a class="el" href="structserif_1_1composition_1_1_composition_entry.html#af7e046098066c0f3a6372eee3cd459a2">serif::composition::CompositionEntry</a></li>
<li>getMassFraction()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a063176b2e4ff9f29111f08f74e21c14c">serif::composition::Composition</a></li>
<li>GetMesh()&#160;:&#160;<a class="el" href="classserif_1_1mesh_1_1_mesh_i_o.html#ae46a00d0a57e0f67f3dd7f57b9685b9c">serif::mesh::MeshIO</a></li>
<li>getMesh()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#adacb9b9ca63bf49956accb36e182f148">serif::polytrope::PolySolver</a></li>
<li>getN()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#aace004c231e8ec057714fbca9fa8caae">serif::polytrope::PolySolver</a></li>
<li>getNumberFraction()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a0020ef34d2e4170495f36074af391e6c">serif::composition::Composition</a></li>
<li>getOrder()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#adbf0f08417551b87c93b9ad864460d81">serif::polytrope::PolySolver</a></li>
<li>getRegisteredSymbols()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a45b3ee396daad93e44387c71b0929ddd">serif::composition::Composition</a></li>
<li>getResource()&#160;:&#160;<a class="el" href="classserif_1_1resource_1_1_resource_manager.html#a0c187f9ef3abc3200d992ef008cfb40a">serif::resource::ResourceManager</a></li>
<li>getSolution()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a33ae7fcf09e558949f34eaf2df1388a1">serif::polytrope::PolySolver</a></li>
<li>getTable()&#160;:&#160;<a class="el" href="classserif_1_1eos_1_1_eos_i_o.html#ae5dff85fb847d0c284997dfb75ccf327">serif::eos::EosIO</a></li>
<li>GMRESInverter()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_g_m_r_e_s_inverter.html#a26e52db2e259ceb0efc74a188a0626df">serif::polytrope::GMRESInverter</a></li>
</ul>
<h3><a id="index_h" name="index_h"></a>- h -</h3><ul>
<li>has()&#160;:&#160;<a class="el" href="class_constants.html#a2aa041fd223f259e55bf098c90581039">Constants</a></li>
<li>hasSymbol()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#a7dee1bb3074a6aa2842d4fffcac4d2c4">composition::Composition</a></li>
<li>HELMTable()&#160;:&#160;<a class="el" href="structhelmholtz_1_1_h_e_l_m_table.html#a0165aed3bb02b69a70934c8b7b185872">helmholtz::HELMTable</a></li>
<li>has()&#160;:&#160;<a class="el" href="classserif_1_1constant_1_1_constants.html#a71aa21de5e8ee9f5fc23169df28f9a4e">serif::constant::Constants</a></li>
<li>hasSymbol()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a01e00a40385ebc61c93dba8064733f7f">serif::composition::Composition</a></li>
<li>HELMTable()&#160;:&#160;<a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_h_e_l_m_table.html#a884959cf006a38fdad597724891f88b3">serif::eos::helmholtz::HELMTable</a></li>
</ul>
<h3><a id="index_i" name="index_i"></a>- i -</h3><ul>
<li>initialize()&#160;:&#160;<a class="el" href="class_constants.html#a60f87120b1eef774efe8c168aa69af6a">Constants</a></li>
<li>isDebugEnabled()&#160;:&#160;<a class="el" href="class_metadata.html#abe52c81e04665628666b4140cd346b69">Metadata</a></li>
<li>isDebuggingEnabled()&#160;:&#160;<a class="el" href="class_d_object.html#ae47bf220fbe2173cf6933c2380035dbd">DObject</a></li>
<li>isFinalized()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#aeb8d505244836212c9015205e486378a">PolytropeOperator</a></li>
<li>IsLoaded()&#160;:&#160;<a class="el" href="class_mesh_i_o.html#a12495fc814254021d44e0509ac760672">MeshIO</a></li>
<li>isLoaded()&#160;:&#160;<a class="el" href="class_constants.html#ae276dfdc0ffe75a53e3842e33ab52630">Constants</a></li>
<li>isotope()&#160;:&#160;<a class="el" href="structcomposition_1_1_composition_entry.html#a31b399ff8b24a6ebbfe4bb9ced7a2afa">composition::CompositionEntry</a></li>
<li>isStiff()&#160;:&#160;<a class="el" href="classnn_approx8_1_1_approx8_network.html#a4b1600c394d4cf312c48e5ca82542a76">nnApprox8::Approx8Network</a></li>
<li>isValidComposition()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#ac71fb70e029b4310e2bb4232e4270e96">composition::Composition</a></li>
<li>isValidSymbol()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#a11a463394bf9110ac0f1a8b1df1384e9">composition::Composition</a></li>
<li>initialize()&#160;:&#160;<a class="el" href="classserif_1_1constant_1_1_constants.html#a88578dd2dc433c5c862b01a1539862fe">serif::constant::Constants</a></li>
<li>isFinalized()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a99b59a8f7cf8ac1f6106ee9cb014c931">serif::polytrope::PolytropeOperator</a></li>
<li>IsLoaded()&#160;:&#160;<a class="el" href="classserif_1_1mesh_1_1_mesh_i_o.html#aa685c3f323d5189edfa326c866f552d6">serif::mesh::MeshIO</a></li>
<li>isLoaded()&#160;:&#160;<a class="el" href="classserif_1_1constant_1_1_constants.html#abaebbd4df3f8ce0162b1f6014f2420ac">serif::constant::Constants</a></li>
<li>isotope()&#160;:&#160;<a class="el" href="structserif_1_1composition_1_1_composition_entry.html#a17eb67ef1c07528295db845150c32615">serif::composition::CompositionEntry</a></li>
<li>isStiff()&#160;:&#160;<a class="el" href="classserif_1_1network_1_1approx8_1_1_approx8_network.html#a2e1f6e00bd622d2186724680dce7184f">serif::network::approx8::Approx8Network</a></li>
<li>isValidComposition()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a14d19ec7ff396768bfe553522abc44db">serif::composition::Composition</a></li>
<li>isValidSymbol()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a753bcffca93a4dd8a0f38afc00cf05fb">serif::composition::Composition</a></li>
</ul>
<h3><a id="index_k" name="index_k"></a>- k -</h3><ul>
<li>keys()&#160;:&#160;<a class="el" href="class_constants.html#ab9de36fa145552a3e7964e7e85a67149">Constants</a></li>
<li>keys()&#160;:&#160;<a class="el" href="classserif_1_1constant_1_1_constants.html#a74dd8438a0f96ef5ee4f0d97c5a83f21">serif::constant::Constants</a></li>
</ul>
<h3><a id="index_l" name="index_l"></a>- l -</h3><ul>
<li>LinearRescale()&#160;:&#160;<a class="el" href="class_mesh_i_o.html#a5e37286d1c548a6b6f419f651c1f32dd">MeshIO</a></li>
<li>load()&#160;:&#160;<a class="el" href="class_constants.html#a186aebd9ec5f45378df3900ae2bf680e">Constants</a>, <a class="el" href="class_eos_i_o.html#a0ee0b3675bd16eb41e5a6b18cb1774ea">EosIO</a>, <a class="el" href="class_resource_manager.html#ad27100286a53042182fe6c2315dc32c6">ResourceManager</a></li>
<li>loadAllResources()&#160;:&#160;<a class="el" href="class_resource_manager.html#abcdc9596a480077d38c334c7090287fd">ResourceManager</a></li>
<li>loadHelm()&#160;:&#160;<a class="el" href="class_eos_i_o.html#a488dad41ac68d4e653d0d68718af6f6b">EosIO</a></li>
<li>loadResource()&#160;:&#160;<a class="el" href="class_resource_manager.html#ae50d8cd6e967d02ca9e04220778d4b57">ResourceManager</a></li>
<li>LoadSolverUserParams()&#160;:&#160;<a class="el" href="class_poly_solver.html#a52bc98bb74abf87e569bafd8ba97e06a">PolySolver</a></li>
<li>lock()&#160;:&#160;<a class="el" href="class_lockable_d_object.html#ade38ca54703913359fc3b4366f6e292a">LockableDObject</a></li>
<li>LockableDObject()&#160;:&#160;<a class="el" href="class_lockable_d_object.html#ae1a174a2740fa053626fe2820ee0efee">LockableDObject</a></li>
<li>LogManager()&#160;:&#160;<a class="el" href="class_probe_1_1_log_manager.html#a4b5d1db2e4e4a0902aef7ab5878f381f">Probe::LogManager</a></li>
<li>LinearRescale()&#160;:&#160;<a class="el" href="classserif_1_1mesh_1_1_mesh_i_o.html#a059c3c5dbabff0d175a6dccfbe8819f6">serif::mesh::MeshIO</a></li>
<li>load()&#160;:&#160;<a class="el" href="classserif_1_1constant_1_1_constants.html#aa9c956328b38dc37136afa98cc5edc49">serif::constant::Constants</a>, <a class="el" href="classserif_1_1eos_1_1_eos_i_o.html#ae7defa9a9e1b4a05f5220faf24ee2810">serif::eos::EosIO</a>, <a class="el" href="classserif_1_1resource_1_1_resource_manager.html#ad27100286a53042182fe6c2315dc32c6">serif::resource::ResourceManager</a></li>
<li>loadAllResources()&#160;:&#160;<a class="el" href="classserif_1_1resource_1_1_resource_manager.html#ace59a058090680691c1d5fdc1c3d9896">serif::resource::ResourceManager</a></li>
<li>loadHelm()&#160;:&#160;<a class="el" href="classserif_1_1eos_1_1_eos_i_o.html#a01213c94ceed0860810411288f185a02">serif::eos::EosIO</a></li>
<li>loadResource()&#160;:&#160;<a class="el" href="classserif_1_1resource_1_1_resource_manager.html#ae50d8cd6e967d02ca9e04220778d4b57">serif::resource::ResourceManager</a></li>
<li>LoadSolverUserParams()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a9054799327ed6752e33bf88e0722ebfc">serif::polytrope::PolySolver</a></li>
<li>LogManager()&#160;:&#160;<a class="el" href="classserif_1_1probe_1_1_log_manager.html#a0b6ca6d6064efb3d7b0d05d222238fed">serif::probe::LogManager</a></li>
</ul>
<h3><a id="index_m" name="index_m"></a>- m -</h3><ul>
<li>mass_fraction()&#160;:&#160;<a class="el" href="structcomposition_1_1_composition_entry.html#a5aaa59a5c39cf3c81518a910dc0362cc">composition::CompositionEntry</a></li>
<li>MeshIO()&#160;:&#160;<a class="el" href="class_mesh_i_o.html#a4629e793f6f18f499a763dcb5f98bc1a">MeshIO</a></li>
<li>Metadata()&#160;:&#160;<a class="el" href="class_metadata.html#ae849560667461008cb72e83919c20be0">Metadata</a></li>
<li>mix()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#a07251594917ef7071d4a4e96fa7f85e7">composition::Composition</a></li>
<li>Mult()&#160;:&#160;<a class="el" href="class_g_m_r_e_s_inverter.html#ae80b606a7d568d1702a9256635fc160f">GMRESInverter</a>, <a class="el" href="class_polytrope_operator.html#a33c7f48fc5d67b0d42e2c29c33361ba7">PolytropeOperator</a>, <a class="el" href="class_schur_compliment.html#ac7a15e10033c6c164ef7da6b21e2b307">SchurCompliment</a></li>
<li>mass_fraction()&#160;:&#160;<a class="el" href="structserif_1_1composition_1_1_composition_entry.html#a8dc5fd664434eed80c9a476bc36978f1">serif::composition::CompositionEntry</a></li>
<li>MeshIO()&#160;:&#160;<a class="el" href="classserif_1_1mesh_1_1_mesh_i_o.html#aa08d33bc551cc289002cda7c9628bcce">serif::mesh::MeshIO</a></li>
<li>mix()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a5b493cbd3219704d7eca1f276e79c4ce">serif::composition::Composition</a></li>
<li>Mult()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_g_m_r_e_s_inverter.html#a698ccfa71e87e381b6c0a4d7a081a776">serif::polytrope::GMRESInverter</a>, <a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a3967768a154ffd53cae54e1b69ef32a5">serif::polytrope::PolytropeOperator</a>, <a class="el" href="classserif_1_1polytrope_1_1_schur_compliment.html#a697f3d788eaac9124e17c905b4b3d19f">serif::polytrope::SchurCompliment</a></li>
</ul>
<h3><a id="index_n" name="index_n"></a>- n -</h3><ul>
<li>Network()&#160;:&#160;<a class="el" href="classnuclear_network_1_1_network.html#a05ed8fbc91b965bcd9b199486437af9d">nuclearNetwork::Network</a></li>
<li>newFileLogger()&#160;:&#160;<a class="el" href="class_probe_1_1_log_manager.html#af948f35b4dc268fefa42794cd9c22b0e">Probe::LogManager</a></li>
<li>NonlinearPowerIntegrator()&#160;:&#160;<a class="el" href="classpoly_m_f_e_m_utils_1_1_nonlinear_power_integrator.html#a7a2173f4958d7c543ddd72f7fc64f555">polyMFEMUtils::NonlinearPowerIntegrator</a></li>
<li>number_fraction()&#160;:&#160;<a class="el" href="structcomposition_1_1_composition_entry.html#a0ddaa99d87e1183c166d83c5184d55f7">composition::CompositionEntry</a></li>
<li>Network()&#160;:&#160;<a class="el" href="classserif_1_1network_1_1_network.html#a24e5233caa58d04a3064783be69c6011">serif::network::Network</a></li>
<li>newFileLogger()&#160;:&#160;<a class="el" href="classserif_1_1probe_1_1_log_manager.html#a74964777715ea748c3c88491f4d0697f">serif::probe::LogManager</a></li>
<li>NonlinearPowerIntegrator()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1poly_m_f_e_m_utils_1_1_nonlinear_power_integrator.html#a1755c6ed93aa9aa09b54254b16f38b69">serif::polytrope::polyMFEMUtils::NonlinearPowerIntegrator</a></li>
<li>number_fraction()&#160;:&#160;<a class="el" href="structserif_1_1composition_1_1_composition_entry.html#a74a1d1362ee06e0414d96542be64036d">serif::composition::CompositionEntry</a></li>
</ul>
<h3><a id="index_o" name="index_o"></a>- o -</h3><ul>
<li>operator()()&#160;:&#160;<a class="el" href="structnn_approx8_1_1_jacobian.html#a3a5241783e5a61fdddb9c8c30fcc5967">nnApprox8::Jacobian</a>, <a class="el" href="structnn_approx8_1_1_o_d_e.html#afae87e1edf894c046fb6f800cc6d43eb">nnApprox8::ODE</a></li>
<li>operator+()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#a68472af2e55383eda8bc7ca5b6092462">composition::Composition</a></li>
<li>operator=()&#160;:&#160;<a class="el" href="class_probe_1_1_log_manager.html#a834dc2138cd37ab6540823a26fdcd3c7">Probe::LogManager</a>, <a class="el" href="class_resource_manager.html#ac213fb8bed90e40d1ba8018563f9e4b0">ResourceManager</a></li>
<li>operator[]()&#160;:&#160;<a class="el" href="class_constants.html#ad75620743b867fc20d4a05027d1a1c01">Constants</a></li>
<li>operator()()&#160;:&#160;<a class="el" href="structserif_1_1network_1_1approx8_1_1_jacobian.html#a8b2b6104944902f9ae737fd7a2aac7c9">serif::network::approx8::Jacobian</a>, <a class="el" href="structserif_1_1network_1_1approx8_1_1_o_d_e.html#a040a8c59f79d7b890076e7f0eb1f94de">serif::network::approx8::ODE</a></li>
<li>operator+()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#aa53bed008cfde8ff4f2e51a352c52afe">serif::composition::Composition</a></li>
<li>operator=()&#160;:&#160;<a class="el" href="classserif_1_1probe_1_1_log_manager.html#a5bf06167fb1e8da5248fe2cb0385ad53">serif::probe::LogManager</a>, <a class="el" href="classserif_1_1resource_1_1_resource_manager.html#ae82262af7c49d6a9d0158514a9e5a572">serif::resource::ResourceManager</a></li>
<li>operator[]()&#160;:&#160;<a class="el" href="classserif_1_1constant_1_1_constants.html#a11a887b54836c00beecd14b110bc0d5d">serif::constant::Constants</a></li>
</ul>
<h3><a id="index_p" name="index_p"></a>- p -</h3><ul>
<li>PolySolver()&#160;:&#160;<a class="el" href="class_poly_solver.html#a6a6f08a286cdbc7927d11580c5cb8132">PolySolver</a></li>
<li>PolytropeOperator()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#a070426ddaafad8c77154d8d917b7b1a4">PolytropeOperator</a></li>
<li>populate_free_dof_array()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#aa9cfb4e72fa684becbe3d7d16fa23423">PolytropeOperator</a></li>
<li>prepareMesh()&#160;:&#160;<a class="el" href="class_poly_solver.html#a2d48773a83a2004b0891f0fa2a16228f">PolySolver</a></li>
<li>PolySolver()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a2c11412977ffbd57ccc85a2a38c0343e">serif::polytrope::PolySolver</a></li>
<li>PolytropeOperator()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a667449268dd8e49bce15d870c5c06a34">serif::polytrope::PolytropeOperator</a></li>
<li>populate_free_dof_array()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a3e41f4a3cb8c34cc1ffcb531d4b7bf18">serif::polytrope::PolytropeOperator</a></li>
<li>prepareMesh()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#aa5ff308c9a7cce691e2c03e2b8ebc7ee">serif::polytrope::PolySolver</a></li>
</ul>
<h3><a id="index_r" name="index_r"></a>- r -</h3><ul>
<li>reconstruct_full_block_state_vector()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#a40be1a66ada528554881e8ee274a9a9c">PolytropeOperator</a></li>
<li>reconstruct_full_state_vector()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#ac25b486557eff0e6d986c6dc9044afad">PolytropeOperator</a></li>
<li>registerPlugin()&#160;:&#160;<a class="el" href="class_d_object.html#a15afffdf339150fc872bf63bdd08d581">DObject</a></li>
<li>registerSymbol()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#adedb7b53ecd70b2cf4295f6ccd8f37f8">composition::Composition</a></li>
<li>rel_abundance()&#160;:&#160;<a class="el" href="structcomposition_1_1_composition_entry.html#aa5f8845229599660aef1a39f50f6a49e">composition::CompositionEntry</a></li>
<li>ResourceManager()&#160;:&#160;<a class="el" href="class_resource_manager.html#a3b32babd2e81909bbd90d7f2d566fadb">ResourceManager</a></li>
<li>runAllPlugins()&#160;:&#160;<a class="el" href="class_d_object.html#a1223275dcbbf20334ea11707346acb93">DObject</a></li>
<li>runPlugin()&#160;:&#160;<a class="el" href="class_d_object.html#a99072eb52bb22745f0248f273fbf28fb">DObject</a></li>
<li>reconstruct_full_block_state_vector()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a254f390119cfb84ddb0f422c5a5d7d40">serif::polytrope::PolytropeOperator</a></li>
<li>reconstruct_full_state_vector()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a8a0fe3f8e5a477d2e33aaed29fb22dd0">serif::polytrope::PolytropeOperator</a></li>
<li>registerSymbol()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a66fde1b9ae6724aefb8eb98800a0ae2b">serif::composition::Composition</a></li>
<li>rel_abundance()&#160;:&#160;<a class="el" href="structserif_1_1composition_1_1_composition_entry.html#a061453b8c21234b8f05d7093bf1998fc">serif::composition::CompositionEntry</a></li>
<li>ResourceManager()&#160;:&#160;<a class="el" href="classserif_1_1resource_1_1_resource_manager.html#a3b32babd2e81909bbd90d7f2d566fadb">serif::resource::ResourceManager</a></li>
</ul>
<h3><a id="index_s" name="index_s"></a>- s -</h3><ul>
<li>saveAndViewSolution()&#160;:&#160;<a class="el" href="class_poly_solver.html#a57088b366b961a12df6ed898f23341b4">PolySolver</a></li>
<li>scatter_boundary_conditions()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#a9810f0de67b4e530d45fdf51369b8294">PolytropeOperator</a></li>
<li>SchurCompliment()&#160;:&#160;<a class="el" href="class_schur_compliment.html#a46cd829f99ec2d7ab3223b33f4beb86d">SchurCompliment</a></li>
<li>set_essential_true_dofs()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#a297cada6b0c1c1e3478a223863b23d44">PolytropeOperator</a></li>
<li>setByteSize()&#160;:&#160;<a class="el" href="class_metadata.html#a07035de7b0c780ef340e1a11c60a4d2b">Metadata</a></li>
<li>setCompositionMode()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#ae49a078f08e403a64185ff2ddf59604f">composition::Composition</a></li>
<li>setData()&#160;:&#160;<a class="el" href="class_d_object.html#ab1718571434e84e90f1ec463e4786a8a">DObject</a></li>
<li>setDataType()&#160;:&#160;<a class="el" href="class_metadata.html#a88f4f57d443e2b7664e75e57a29dfbf0">Metadata</a></li>
<li>setDebugEnabled()&#160;:&#160;<a class="el" href="class_metadata.html#a365c4594ad65c3b10b40a1cf4f4aea26">Metadata</a></li>
<li>setDebugging()&#160;:&#160;<a class="el" href="class_d_object.html#a6f0023aee463e71d92442dcf61b6ed47">DObject</a></li>
<li>setDimensions()&#160;:&#160;<a class="el" href="class_metadata.html#af5264d1666839e69c192b565b5cfa606">Metadata</a></li>
<li>setErrorCode()&#160;:&#160;<a class="el" href="class_d_object.html#a3dce47a519f9da5085c0c5ac1eea4f38">DObject</a></li>
<li>setInitialGuess()&#160;:&#160;<a class="el" href="class_poly_solver.html#ac0e9a5fcd6b6415c9a1603c82da5eb31">PolySolver</a></li>
<li>setMassFracMode()&#160;:&#160;<a class="el" href="structcomposition_1_1_composition_entry.html#ae579b896a290af33d388ad44e63daf63">composition::CompositionEntry</a></li>
<li>setMassFraction()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#aaa9fb4f9002af09badfea5c82c3000e8">composition::Composition</a>, <a class="el" href="structcomposition_1_1_composition_entry.html#aa27e93d90553c6edbd28ea89997eded0">composition::CompositionEntry</a></li>
<li>setNumberFracMode()&#160;:&#160;<a class="el" href="structcomposition_1_1_composition_entry.html#a12fd2efaada6f1b00543133ff4830b63">composition::CompositionEntry</a></li>
<li>setNumberFraction()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#a124b97a88c5d1cf8cbcc3cd8dc0bcd11">composition::Composition</a>, <a class="el" href="structcomposition_1_1_composition_entry.html#a62d76c2c095d1b2c0059f1154ad4069b">composition::CompositionEntry</a></li>
<li>SetOperator()&#160;:&#160;<a class="el" href="class_schur_compliment.html#a4db9ea76bb7e6a577b1299c71e0909a0">SchurCompliment</a></li>
<li>setOperatorEssentialTrueDofs()&#160;:&#160;<a class="el" href="class_poly_solver.html#aaa8691469f98eb17cadae2e2f43de9bb">PolySolver</a></li>
<li>setSpecies()&#160;:&#160;<a class="el" href="structcomposition_1_1_composition_entry.html#aaca3c66f996380ba94dd3ce01b647ef2">composition::CompositionEntry</a></li>
<li>setStiff()&#160;:&#160;<a class="el" href="classnn_approx8_1_1_approx8_network.html#a11523cc90db255a50a9cecc0d794e5f8">nnApprox8::Approx8Network</a></li>
<li>SetUp()&#160;:&#160;<a class="el" href="classconst_test.html#af4753885bf401953202f89d455a2702f">constTest</a>, <a class="el" href="class_d_object_test.html#a95ba0f78c44e0bd46603de32028b7be6">DObjectTest</a>, <a class="el" href="class_lockable_d_object_test.html#a4ca643fb176141b51f4761dd3df64769">LockableDObjectTest</a>, <a class="el" href="class_metadata_test.html#a6273a370a10b42155af951a8fc2c47fa">MetadataTest</a></li>
<li>setupNewtonSolver()&#160;:&#160;<a class="el" href="class_poly_solver.html#a736a4d80510098735f85e0360d1c96e6">PolySolver</a></li>
<li>solve()&#160;:&#160;<a class="el" href="class_poly_solver.html#a7de958588f56052db9c636e08c98e7ac">PolySolver</a></li>
<li>subset()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#aa2ac530a3c4996b8a6ad1aca11e591c0">composition::Composition</a></li>
<li>symbol()&#160;:&#160;<a class="el" href="structcomposition_1_1_composition_entry.html#a3e95c03a628d38b7aea6c45d6ef63b19">composition::CompositionEntry</a></li>
<li>saveAndViewSolution()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a0a5356ef1625fcd41e7b04ad22884366">serif::polytrope::PolySolver</a></li>
<li>scatter_boundary_conditions()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a8b394c9ed626714a49f4212aa17f454c">serif::polytrope::PolytropeOperator</a></li>
<li>SchurCompliment()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_schur_compliment.html#a213cf397b1fd4e46891937ab1d2b738b">serif::polytrope::SchurCompliment</a></li>
<li>set_essential_true_dofs()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a789c9924ad60468d3a4cf5cc8783be69">serif::polytrope::PolytropeOperator</a></li>
<li>setCompositionMode()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#adbaf8124e91249b78943231fc0be4c04">serif::composition::Composition</a></li>
<li>setInitialGuess()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#ab659d933991ef7ca122cbaaeee222d09">serif::polytrope::PolySolver</a></li>
<li>setMassFracMode()&#160;:&#160;<a class="el" href="structserif_1_1composition_1_1_composition_entry.html#aa204680bddf81496f2fa5aefd6992c88">serif::composition::CompositionEntry</a></li>
<li>setMassFraction()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a8bc62bbff131ee376dfc9037db2dd930">serif::composition::Composition</a>, <a class="el" href="structserif_1_1composition_1_1_composition_entry.html#a5c2bcefc1fbb520e370dbf774a689ec5">serif::composition::CompositionEntry</a></li>
<li>setNumberFracMode()&#160;:&#160;<a class="el" href="structserif_1_1composition_1_1_composition_entry.html#a25f4269be1e3f01738c192ec7d57e617">serif::composition::CompositionEntry</a></li>
<li>setNumberFraction()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#ad3cb64d55ce4098d70732c315e8bf3cf">serif::composition::Composition</a>, <a class="el" href="structserif_1_1composition_1_1_composition_entry.html#a42c7e7dceea325405c9e8696b2907298">serif::composition::CompositionEntry</a></li>
<li>SetOperator()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_schur_compliment.html#aec7b27ebe42b695feda891a2d21e877f">serif::polytrope::SchurCompliment</a></li>
<li>setOperatorEssentialTrueDofs()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a9f084db0119ceaa73f54c91e89325201">serif::polytrope::PolySolver</a></li>
<li>setSpecies()&#160;:&#160;<a class="el" href="structserif_1_1composition_1_1_composition_entry.html#a6c41c9948c9a0d4e71879b14fd829a23">serif::composition::CompositionEntry</a></li>
<li>setStiff()&#160;:&#160;<a class="el" href="classserif_1_1network_1_1approx8_1_1_approx8_network.html#ac6d96bd1e5fbc2011a3a9e67a5ea4327">serif::network::approx8::Approx8Network</a></li>
<li>SetUp()&#160;:&#160;<a class="el" href="classconst_test.html#af4753885bf401953202f89d455a2702f">constTest</a></li>
<li>setupNewtonSolver()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a582ff9bdcfaeac3ad3497aadb5064990">serif::polytrope::PolySolver</a></li>
<li>solve()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a275f62a8b6a473ba0fe700692be561b0">serif::polytrope::PolySolver</a></li>
<li>subset()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a7acbc7f61d6c68dec03f3866d2c53daf">serif::composition::Composition</a></li>
<li>symbol()&#160;:&#160;<a class="el" href="structserif_1_1composition_1_1_composition_entry.html#a03afb05a401736976348003bc465a561">serif::composition::CompositionEntry</a></li>
</ul>
<h3><a id="index_t" name="index_t"></a>- t -</h3><ul>
<li>TearDown()&#160;:&#160;<a class="el" href="class_metadata_test.html#a24075d61d37dceacd353ecde16a1ac71">MetadataTest</a></li>
<li>trim()&#160;:&#160;<a class="el" href="class_constants.html#a4914c90be3139670bda18e212d69cf22">Constants</a></li>
<li>trim()&#160;:&#160;<a class="el" href="classserif_1_1constant_1_1_constants.html#afc1fc624ed4be1fe31a581d7a211df8d">serif::constant::Constants</a></li>
</ul>
<h3><a id="index_u" name="index_u"></a>- u -</h3><ul>
<li>unlock()&#160;:&#160;<a class="el" href="class_lockable_d_object.html#a1481ed99dcd837490bf28309aadaedfb">LockableDObject</a></li>
<li>unregisterPlugin()&#160;:&#160;<a class="el" href="class_d_object.html#a99b8688849e11501033a25f61efb8356">DObject</a></li>
<li>update_inverse_nonlinear_jacobian()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#a766bbf8933c552798200647380348493">PolytropeOperator</a></li>
<li>update_inverse_schur_compliment()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#a20bca119c918bb83d09652a6df925e6d">PolytropeOperator</a></li>
<li>update_preconditioner()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#a7c37501c7eee6cb207b89365724a0119">PolytropeOperator</a></li>
<li>updateConstantTerms()&#160;:&#160;<a class="el" href="class_schur_compliment.html#a591a8ffa554ae1886ace4a67f23b99f1">SchurCompliment</a></li>
<li>updateInverseNonlinearJacobian()&#160;:&#160;<a class="el" href="class_schur_compliment.html#aeba363760440da2380f3edca3f380c90">SchurCompliment</a></li>
<li>update_inverse_nonlinear_jacobian()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#ad98f87239af1af1323fcd3575ce51fe9">serif::polytrope::PolytropeOperator</a></li>
<li>update_inverse_schur_compliment()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#ab817575c7d101c1535ff3a04d96c3669">serif::polytrope::PolytropeOperator</a></li>
<li>update_preconditioner()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a703f4eca845be7927b34a1017f85542b">serif::polytrope::PolytropeOperator</a></li>
<li>updateConstantTerms()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_schur_compliment.html#adfc9a44573f7f0a9198fcb651d0b446c">serif::polytrope::SchurCompliment</a></li>
<li>updateInverseNonlinearJacobian()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_schur_compliment.html#a5f1805b4162158244d421d9d47587508">serif::polytrope::SchurCompliment</a></li>
</ul>
<h3><a id="index_v" name="index_v"></a>- v -</h3><ul>
<li>validateComposition()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#a240c69912c5cd76a4400bbf9d5c13ad5">composition::Composition</a></li>
<li>validateComposition()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#ad97c44b6ce8524c23e768a1e8330e838">serif::composition::Composition</a></li>
</ul>
<h3><a id="index__7E" name="index__7E"></a>- ~ -</h3><ul>
<li>~Composition()&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#a23bef129f5705d59b1481648729c501c">composition::Composition</a></li>
<li>~EosIO()&#160;:&#160;<a class="el" href="class_eos_i_o.html#a3f98f4e57d438afcb43c1ce79012197a">EosIO</a></li>
<li>~GMRESInverter()&#160;:&#160;<a class="el" href="class_g_m_r_e_s_inverter.html#a4d06d450ace28a61a61f1dc093165902">GMRESInverter</a></li>
<li>~HELMTable()&#160;:&#160;<a class="el" href="structhelmholtz_1_1_h_e_l_m_table.html#a583c5db386d1d01b0ad4b7ba45e54281">helmholtz::HELMTable</a></li>
<li>~LogManager()&#160;:&#160;<a class="el" href="class_probe_1_1_log_manager.html#a0edfb90dadf2e490e057b54de37c60a5">Probe::LogManager</a></li>
<li>~MeshIO()&#160;:&#160;<a class="el" href="class_mesh_i_o.html#abf2d0986e73b920c71c03dc61730846c">MeshIO</a></li>
<li>~Network()&#160;:&#160;<a class="el" href="classnuclear_network_1_1_network.html#ac830af7c8c70324719511a97b3b1dd9a">nuclearNetwork::Network</a></li>
<li>~PolySolver()&#160;:&#160;<a class="el" href="class_poly_solver.html#a795d3c3ff5c21f4e5d64c0d33978527a">PolySolver</a></li>
<li>~PolytropeOperator()&#160;:&#160;<a class="el" href="class_polytrope_operator.html#ae636aff8692d7d9cce38591b9e74f97e">PolytropeOperator</a></li>
<li>~SchurCompliment()&#160;:&#160;<a class="el" href="class_schur_compliment.html#a82d3e36514b386c7e1556ee3e07b19f0">SchurCompliment</a></li>
<li>~Composition()&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a622fb7c29475c6d58b6ba719c45ba874">serif::composition::Composition</a></li>
<li>~EosIO()&#160;:&#160;<a class="el" href="classserif_1_1eos_1_1_eos_i_o.html#adb2de6c8274b38c6bd71b4e696cf8d61">serif::eos::EosIO</a></li>
<li>~GMRESInverter()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_g_m_r_e_s_inverter.html#a78c5540e756ad46201097cc83d90d356">serif::polytrope::GMRESInverter</a></li>
<li>~HELMTable()&#160;:&#160;<a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_h_e_l_m_table.html#ae324718638916a18cf505cdcb21ff9cd">serif::eos::helmholtz::HELMTable</a></li>
<li>~LogManager()&#160;:&#160;<a class="el" href="classserif_1_1probe_1_1_log_manager.html#aa54e2c1cc121707bfc20d24674078d4a">serif::probe::LogManager</a></li>
<li>~MeshIO()&#160;:&#160;<a class="el" href="classserif_1_1mesh_1_1_mesh_i_o.html#a141be1b68e64421b76a7627d0b5c9546">serif::mesh::MeshIO</a></li>
<li>~Network()&#160;:&#160;<a class="el" href="classserif_1_1network_1_1_network.html#a1073c0e19c11da221b60916343dbd6e4">serif::network::Network</a></li>
<li>~PolySolver()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_poly_solver.html#a0fb680aba815bf4f409d9c07a16a0c16">serif::polytrope::PolySolver</a></li>
<li>~PolytropeOperator()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_polytrope_operator.html#a30894180acd8d2226675cc7e697ac988">serif::polytrope::PolytropeOperator</a></li>
<li>~SchurCompliment()&#160;:&#160;<a class="el" href="classserif_1_1polytrope_1_1_schur_compliment.html#a3a725e360438516bdca280da31bbfc08">serif::polytrope::SchurCompliment</a></li>
</ul>
</div><!-- contents -->
</div><!-- doc-content -->

2
docs/html/functions_rela.html
View File

@@ -100,7 +100,7 @@ $(function(){initNavTree('functions_rela.html',''); initResizable(true); });
<div class="contents">
<div class="textblock">Here is a list of all related symbols with links to the classes they belong to:</div><ul>
<li>operator&lt;&lt;&#160;:&#160;<a class="el" href="classcomposition_1_1_composition.html#a36c2525d21cd932065bb2bb30bc57fb4">composition::Composition</a>, <a class="el" href="structcomposition_1_1_composition_entry.html#ae7a6a113fc5914248eff5629716d6eb2">composition::CompositionEntry</a>, <a class="el" href="structcomposition_1_1_global_composition.html#a3c072a749c3648607771ac9105181f26">composition::GlobalComposition</a>, <a class="el" href="struct_constant.html#a387b3e0a55788b0ea04c77ba040c5aaa">Constant</a>, <a class="el" href="class_d_object.html#aa54e75574f0302a2ca7252f9f0f0b3f1">DObject</a>, <a class="el" href="structhelmholtz_1_1_e_o_s.html#a8071bdc90dec68ba933eb59c902a0b7b">helmholtz::EOS</a>, <a class="el" href="structhelmholtz_1_1_e_o_s_input.html#ae6bc0662e64e05608593df6129ab8edb">helmholtz::EOSInput</a>, <a class="el" href="structhelmholtz_1_1_h_e_l_m_table.html#a65eea84782fc9b5b69b6f7f2ebf57940">helmholtz::HELMTable</a>, <a class="el" href="class_metadata.html#a12949a1ea26c4ff1afeb97101c0493c5">Metadata</a></li>
<li>operator&lt;&lt;&#160;:&#160;<a class="el" href="classserif_1_1composition_1_1_composition.html#a36c2525d21cd932065bb2bb30bc57fb4">serif::composition::Composition</a>, <a class="el" href="structserif_1_1composition_1_1_composition_entry.html#ae7a6a113fc5914248eff5629716d6eb2">serif::composition::CompositionEntry</a>, <a class="el" href="structserif_1_1composition_1_1_global_composition.html#a3c072a749c3648607771ac9105181f26">serif::composition::GlobalComposition</a>, <a class="el" href="structserif_1_1constant_1_1_constant.html#a387b3e0a55788b0ea04c77ba040c5aaa">serif::constant::Constant</a>, <a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_e_o_s.html#a8071bdc90dec68ba933eb59c902a0b7b">serif::eos::helmholtz::EOS</a>, <a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_e_o_s_input.html#ae6bc0662e64e05608593df6129ab8edb">serif::eos::helmholtz::EOSInput</a>, <a class="el" href="structserif_1_1eos_1_1helmholtz_1_1_h_e_l_m_table.html#a65eea84782fc9b5b69b6f7f2ebf57940">serif::eos::helmholtz::HELMTable</a></li>
</ul>
</div><!-- contents -->
</div><!-- doc-content -->

42
docs/html/globals.html
View File

@@ -101,11 +101,6 @@ $(function(){initNavTree('globals.html',''); initResizable(true); });
<div class="contents">
<div class="textblock">Here is a list of all file members with links to the files they belong to:</div>
<h3><a id="index_a" name="index_a"></a>- a -</h3><ul>
<li>array2D&#160;:&#160;<a class="el" href="helm_8h.html#a78b5688d4effa2bab8f6e87e440e7c63">helm.h</a></li>
</ul>
<h3><a id="index_b" name="index_b"></a>- b -</h3><ul>
<li>BREAKPOINT&#160;:&#160;<a class="el" href="debug_8h.html#a48fb4fe58bc76af81a90102d9df506c2">debug.h</a></li>
</ul>
@@ -114,7 +109,6 @@ $(function(){initNavTree('globals.html',''); initResizable(true); });
<h3><a id="index_c" name="index_c"></a>- c -</h3><ul>
<li>ComputeMeshVolume()&#160;:&#160;<a class="el" href="mesh_i_o_test_8cpp.html#aa6ba7ddcf2f95334ee7497d22d9f0f25">meshIOTest.cpp</a></li>
<li>CONFIG_FILENAME&#160;:&#160;<a class="el" href="poly_test_8cpp.html#a355ce39014e2371f32c994670916c1fc">polyTest.cpp</a></li>
<li>createResource()&#160;:&#160;<a class="el" href="resource_manager_types_8cpp.html#ae0a43e40a0c5e0fd54274c9cd8688d19">resourceManagerTypes.cpp</a>, <a class="el" href="resource_manager_types_8h.html#ae0a43e40a0c5e0fd54274c9cd8688d19">resourceManagerTypes.h</a></li>
</ul>
@@ -125,52 +119,21 @@ $(function(){initNavTree('globals.html',''); initResizable(true); });
<h3><a id="index_e" name="index_e"></a>- e -</h3><ul>
<li>EOSTable&#160;:&#160;<a class="el" href="eos_i_o_8h.html#a1aa7735934336ab2646c539c4370dcd5">eosIO.h</a></li>
<li>EXAMPLE_FILENAME&#160;:&#160;<a class="el" href="composition_test_8cpp.html#a2f358f231bffa8eaaa670ec1db93a470">compositionTest.cpp</a>, <a class="el" href="config_test_8cpp.html#a2f358f231bffa8eaaa670ec1db93a470">configTest.cpp</a>, <a class="el" href="mesh_i_o_test_8cpp.html#a2f358f231bffa8eaaa670ec1db93a470">meshIOTest.cpp</a></li>
<li>EXPORT_SYMBOL&#160;:&#160;<a class="el" href="_metadata_8h.html#ab57c319c35ea0fbacf781f2ecb3a4339">Metadata.h</a></li>
</ul>
<h3><a id="index_g" name="index_g"></a>- g -</h3><ul>
<li>getFirstSegment()&#160;:&#160;<a class="el" href="resource_manager_types_8cpp.html#a3adea101b1d749fb0eaee2e91b7e10fe">resourceManagerTypes.cpp</a>, <a class="el" href="resource_manager_types_8h.html#a3adea101b1d749fb0eaee2e91b7e10fe">resourceManagerTypes.h</a></li>
<li>getLastLine()&#160;:&#160;<a class="el" href="probe_test_8cpp.html#a6181751ac1c7f7f38b548af87ad506ab">probeTest.cpp</a></li>
</ul>
<h3><a id="index_h" name="index_h"></a>- h -</h3><ul>
<li>heap_allocate_contiguous_2D_memory()&#160;:&#160;<a class="el" href="helm_8cpp.html#a0537c506d77a3dfea9b237aeb07f3281">helm.cpp</a>, <a class="el" href="helm_8h.html#a0537c506d77a3dfea9b237aeb07f3281">helm.h</a></li>
<li>heap_deallocate_contiguous_2D_memory()&#160;:&#160;<a class="el" href="helm_8cpp.html#a82f032cfe64e2576c67986660cbe824d">helm.cpp</a>, <a class="el" href="helm_8h.html#a82f032cfe64e2576c67986660cbe824d">helm.h</a></li>
</ul>
<h3><a id="index_i" name="index_i"></a>- i -</h3><ul>
<li>IMAX&#160;:&#160;<a class="el" href="helm_8h.html#a6e96ad1c3be2c24926ba0487d28cd75c">helm.h</a></li>
<li>initlaize_opac()&#160;:&#160;<a class="el" href="opac_8h.html#a6243596bfdc55d73744ebecd9e577ee8">opac.h</a></li>
</ul>
<h3><a id="index_j" name="index_j"></a>- j -</h3><ul>
<li>JMAX&#160;:&#160;<a class="el" href="helm_8h.html#a6f799b3fb32ecd6a70300d45fe1dfaad">helm.h</a></li>
</ul>
<h3><a id="index_m" name="index_m"></a>- m -</h3><ul>
<li>main()&#160;:&#160;<a class="el" href="comp_8cpp.html#ac4c0f8a8146b128f1b8f920e3a9c3b1e">comp.cpp</a>, <a class="el" href="test_d_object_8cpp.html#ae66f6b31b5ad750f1fe042a706a4e3d4">testDObject.cpp</a></li>
<li>main()&#160;:&#160;<a class="el" href="comp_8cpp.html#ac4c0f8a8146b128f1b8f920e3a9c3b1e">comp.cpp</a></li>
<li>matrix_type&#160;:&#160;<a class="el" href="approx8_8h.html#abd6c5fdc1f08c03c2027eafe32658e38">approx8.h</a></li>
</ul>
<h3><a id="index_o" name="index_o"></a>- o -</h3><ul>
<li>operator&lt;&lt;()&#160;:&#160;<a class="el" href="_d_object_8cpp.html#aa54e75574f0302a2ca7252f9f0f0b3f1">DObject.cpp</a>, <a class="el" href="_metadata_8cpp.html#a12949a1ea26c4ff1afeb97101c0493c5">Metadata.cpp</a></li>
</ul>
<h3><a id="index_r" name="index_r"></a>- r -</h3><ul>
<li>recurse_keys()&#160;:&#160;<a class="el" href="config_8cpp.html#ab6a5a8b7202ea0d40956283276057e8c">config.cpp</a></li>
<li>Resource&#160;:&#160;<a class="el" href="resource_manager_types_8h.html#ae6247466218d10f5ce0771ead25fa191">resourceManagerTypes.h</a></li>
</ul>
<h3><a id="index_s" name="index_s"></a>- s -</h3><ul>
<li>STRINGIFY&#160;:&#160;<a class="el" href="resource_manager_8cpp.html#a6df1d22fb5f09eccc23b9f399670cfd7">resourceManager.cpp</a></li>
<li>stripTimestamps()&#160;:&#160;<a class="el" href="probe_test_8cpp.html#a1177d7bc99ddb16fe874dc41441b9725">probeTest.cpp</a></li>
@@ -179,8 +142,7 @@ $(function(){initNavTree('globals.html',''); initResizable(true); });
<h3><a id="index_t" name="index_t"></a>- t -</h3><ul>
<li>TEST_CONFIG&#160;:&#160;<a class="el" href="eos_test_8cpp.html#a4c6c407dce0723b41e332e0b48619960">eosTest.cpp</a>, <a class="el" href="approx8_test_8cpp.html#a4c6c407dce0723b41e332e0b48619960">approx8Test.cpp</a>, <a class="el" href="probe_test_8cpp.html#a4c6c407dce0723b41e332e0b48619960">probeTest.cpp</a>, <a class="el" href="resource_manager_test_8cpp.html#a4c6c407dce0723b41e332e0b48619960">resourceManagerTest.cpp</a></li>
<li>TEST_F()&#160;:&#160;<a class="el" href="composition_test_8cpp.html#a99ba25c32a6e47956d231d484dc8e7cd">compositionTest.cpp</a>, <a class="el" href="config_test_8cpp.html#ae70df34c2371cc5c992f20fbf6e6354b">configTest.cpp</a>, <a class="el" href="const_test_8cpp.html#ae050a185fbc60349459af47e661bd3e1">constTest.cpp</a>, <a class="el" href="_d_object_test_8cpp.html#a3fc628b3943158a063739c03a4c2ca1f">DObjectTest.cpp</a>, <a class="el" href="_lockable_d_object_test_8cpp.html#a5c694ab0fb07081c02cac1f0bc3f3e73">LockableDObjectTest.cpp</a>, <a class="el" href="_metadata_test_8cpp.html#adbb375b61bd5961e38e8c5b51e538e75">MetadataTest.cpp</a>, <a class="el" href="eos_test_8cpp.html#a27d86e530fc20098b426edbc39c0c7e5">eosTest.cpp</a>, <a class="el" href="mesh_i_o_test_8cpp.html#a0cb4f62baac8f32aaefbab6c9e5b93bc">meshIOTest.cpp</a>, <a class="el" href="approx8_test_8cpp.html#a282ac3f9d020662bcaa9f8ad569d3a60">approx8Test.cpp</a>, <a class="el" href="poly_test_8cpp.html#a4d8d8c3608d63a6200aa3ccc54c885f5">polyTest.cpp</a>, <a class="el" href="probe_test_8cpp.html#a99cf9b4c0cf0a327598829cb53d87174">probeTest.cpp</a>, <a class="el" href="resource_manager_test_8cpp.html#a8b35d7c9fce4657fbfd3cd094c7dced5">resourceManagerTest.cpp</a></li>
<li>testFunction()&#160;:&#160;<a class="el" href="test_d_object_8cpp.html#a5cce1ff8e67a00ce9122097c4bbb5b02">testDObject.cpp</a></li>
<li>TEST_F()&#160;:&#160;<a class="el" href="composition_test_8cpp.html#a99ba25c32a6e47956d231d484dc8e7cd">compositionTest.cpp</a>, <a class="el" href="config_test_8cpp.html#ae70df34c2371cc5c992f20fbf6e6354b">configTest.cpp</a>, <a class="el" href="const_test_8cpp.html#ae050a185fbc60349459af47e661bd3e1">constTest.cpp</a>, <a class="el" href="eos_test_8cpp.html#a27d86e530fc20098b426edbc39c0c7e5">eosTest.cpp</a>, <a class="el" href="mesh_i_o_test_8cpp.html#a0cb4f62baac8f32aaefbab6c9e5b93bc">meshIOTest.cpp</a>, <a class="el" href="approx8_test_8cpp.html#a282ac3f9d020662bcaa9f8ad569d3a60">approx8Test.cpp</a>, <a class="el" href="poly_test_8cpp.html#a4d8d8c3608d63a6200aa3ccc54c885f5">polyTest.cpp</a>, <a class="el" href="probe_test_8cpp.html#a99cf9b4c0cf0a327598829cb53d87174">probeTest.cpp</a>, <a class="el" href="resource_manager_test_8cpp.html#a8b35d7c9fce4657fbfd3cd094c7dced5">resourceManagerTest.cpp</a></li>
<li>TOSTRING&#160;:&#160;<a class="el" href="resource_manager_8cpp.html#a9063e80f8777300c93afde6e6f4c9cea">resourceManager.cpp</a></li>
</ul>

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@@ -103,39 +103,16 @@ $(function(){initNavTree('globals_func.html',''); initResizable(true); });
<h3><a id="index_c" name="index_c"></a>- c -</h3><ul>
<li>ComputeMeshVolume()&#160;:&#160;<a class="el" href="mesh_i_o_test_8cpp.html#aa6ba7ddcf2f95334ee7497d22d9f0f25">meshIOTest.cpp</a></li>
<li>createResource()&#160;:&#160;<a class="el" href="resource_manager_types_8cpp.html#ae0a43e40a0c5e0fd54274c9cd8688d19">resourceManagerTypes.cpp</a>, <a class="el" href="resource_manager_types_8h.html#ae0a43e40a0c5e0fd54274c9cd8688d19">resourceManagerTypes.h</a></li>
</ul>
<h3><a id="index_g" name="index_g"></a>- g -</h3><ul>
<li>getFirstSegment()&#160;:&#160;<a class="el" href="resource_manager_types_8cpp.html#a3adea101b1d749fb0eaee2e91b7e10fe">resourceManagerTypes.cpp</a>, <a class="el" href="resource_manager_types_8h.html#a3adea101b1d749fb0eaee2e91b7e10fe">resourceManagerTypes.h</a></li>
<li>getLastLine()&#160;:&#160;<a class="el" href="probe_test_8cpp.html#a6181751ac1c7f7f38b548af87ad506ab">probeTest.cpp</a></li>
</ul>
<h3><a id="index_h" name="index_h"></a>- h -</h3><ul>
<li>heap_allocate_contiguous_2D_memory()&#160;:&#160;<a class="el" href="helm_8cpp.html#a0537c506d77a3dfea9b237aeb07f3281">helm.cpp</a>, <a class="el" href="helm_8h.html#a0537c506d77a3dfea9b237aeb07f3281">helm.h</a></li>
<li>heap_deallocate_contiguous_2D_memory()&#160;:&#160;<a class="el" href="helm_8cpp.html#a82f032cfe64e2576c67986660cbe824d">helm.cpp</a>, <a class="el" href="helm_8h.html#a82f032cfe64e2576c67986660cbe824d">helm.h</a></li>
</ul>
<h3><a id="index_i" name="index_i"></a>- i -</h3><ul>
<li>initlaize_opac()&#160;:&#160;<a class="el" href="opac_8h.html#a6243596bfdc55d73744ebecd9e577ee8">opac.h</a></li>
</ul>
<h3><a id="index_m" name="index_m"></a>- m -</h3><ul>
<li>main()&#160;:&#160;<a class="el" href="comp_8cpp.html#ac4c0f8a8146b128f1b8f920e3a9c3b1e">comp.cpp</a>, <a class="el" href="test_d_object_8cpp.html#ae66f6b31b5ad750f1fe042a706a4e3d4">testDObject.cpp</a></li>
</ul>
<h3><a id="index_o" name="index_o"></a>- o -</h3><ul>
<li>operator&lt;&lt;()&#160;:&#160;<a class="el" href="_d_object_8cpp.html#aa54e75574f0302a2ca7252f9f0f0b3f1">DObject.cpp</a>, <a class="el" href="_metadata_8cpp.html#a12949a1ea26c4ff1afeb97101c0493c5">Metadata.cpp</a></li>
</ul>
<h3><a id="index_r" name="index_r"></a>- r -</h3><ul>
<li>recurse_keys()&#160;:&#160;<a class="el" href="config_8cpp.html#ab6a5a8b7202ea0d40956283276057e8c">config.cpp</a></li>
<li>main()&#160;:&#160;<a class="el" href="comp_8cpp.html#ac4c0f8a8146b128f1b8f920e3a9c3b1e">comp.cpp</a></li>
</ul>
@@ -145,8 +122,7 @@ $(function(){initNavTree('globals_func.html',''); initResizable(true); });
<h3><a id="index_t" name="index_t"></a>- t -</h3><ul>
<li>TEST_F()&#160;:&#160;<a class="el" href="composition_test_8cpp.html#a99ba25c32a6e47956d231d484dc8e7cd">compositionTest.cpp</a>, <a class="el" href="config_test_8cpp.html#ae70df34c2371cc5c992f20fbf6e6354b">configTest.cpp</a>, <a class="el" href="const_test_8cpp.html#ae050a185fbc60349459af47e661bd3e1">constTest.cpp</a>, <a class="el" href="_d_object_test_8cpp.html#a3fc628b3943158a063739c03a4c2ca1f">DObjectTest.cpp</a>, <a class="el" href="_lockable_d_object_test_8cpp.html#a5c694ab0fb07081c02cac1f0bc3f3e73">LockableDObjectTest.cpp</a>, <a class="el" href="_metadata_test_8cpp.html#adbb375b61bd5961e38e8c5b51e538e75">MetadataTest.cpp</a>, <a class="el" href="eos_test_8cpp.html#a27d86e530fc20098b426edbc39c0c7e5">eosTest.cpp</a>, <a class="el" href="mesh_i_o_test_8cpp.html#a0cb4f62baac8f32aaefbab6c9e5b93bc">meshIOTest.cpp</a>, <a class="el" href="approx8_test_8cpp.html#a282ac3f9d020662bcaa9f8ad569d3a60">approx8Test.cpp</a>, <a class="el" href="poly_test_8cpp.html#a4d8d8c3608d63a6200aa3ccc54c885f5">polyTest.cpp</a>, <a class="el" href="probe_test_8cpp.html#a99cf9b4c0cf0a327598829cb53d87174">probeTest.cpp</a>, <a class="el" href="resource_manager_test_8cpp.html#a8b35d7c9fce4657fbfd3cd094c7dced5">resourceManagerTest.cpp</a></li>
<li>testFunction()&#160;:&#160;<a class="el" href="test_d_object_8cpp.html#a5cce1ff8e67a00ce9122097c4bbb5b02">testDObject.cpp</a></li>
<li>TEST_F()&#160;:&#160;<a class="el" href="composition_test_8cpp.html#a99ba25c32a6e47956d231d484dc8e7cd">compositionTest.cpp</a>, <a class="el" href="config_test_8cpp.html#ae70df34c2371cc5c992f20fbf6e6354b">configTest.cpp</a>, <a class="el" href="const_test_8cpp.html#ae050a185fbc60349459af47e661bd3e1">constTest.cpp</a>, <a class="el" href="eos_test_8cpp.html#a27d86e530fc20098b426edbc39c0c7e5">eosTest.cpp</a>, <a class="el" href="mesh_i_o_test_8cpp.html#a0cb4f62baac8f32aaefbab6c9e5b93bc">meshIOTest.cpp</a>, <a class="el" href="approx8_test_8cpp.html#a282ac3f9d020662bcaa9f8ad569d3a60">approx8Test.cpp</a>, <a class="el" href="poly_test_8cpp.html#a4d8d8c3608d63a6200aa3ccc54c885f5">polyTest.cpp</a>, <a class="el" href="probe_test_8cpp.html#a99cf9b4c0cf0a327598829cb53d87174">probeTest.cpp</a>, <a class="el" href="resource_manager_test_8cpp.html#a8b35d7c9fce4657fbfd3cd094c7dced5">resourceManagerTest.cpp</a></li>
</ul>
</div><!-- contents -->
</div><!-- doc-content -->

152
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@@ -136,19 +136,19 @@ High-Level Usage Examples</h1>
<p>Below are some high-level examples of how to use key components of 4DSSE.</p>
<h2><a class="anchor" id="usage_polysolver"></a>
Solving for a Polytrope</h2>
<p>The <code><a class="el" href="class_poly_solver.html" title="Solves the Lane-Emden equation for a polytropic star using a mixed finite element method.">PolySolver</a></code> class handles the setup and solution of the Lane-Emden equation for polytropic stellar models.</p>
<p>The <code>PolySolver</code> class handles the setup and solution of the Lane-Emden equation for polytropic stellar models.</p>
<div class="fragment"><div class="line"><span class="preprocessor">#include &quot;<a class="code" href="poly_solver_8h.html">polySolver.h</a>&quot;</span></div>
<div class="line"><span class="preprocessor">#include &quot;<a class="code" href="config_8h.html">config.h</a>&quot;</span> <span class="comment">// For global configuration</span></div>
<div class="line"><span class="preprocessor">#include &quot;<a class="code" href="probe_8h.html">probe.h</a>&quot;</span> <span class="comment">// For logging</span></div>
<div class="line"> </div>
<div class="line"><span class="keywordtype">int</span> <a class="code hl_function" href="test_d_object_8cpp.html#ae66f6b31b5ad750f1fe042a706a4e3d4">main</a>() {</div>
<div class="line"><span class="keywordtype">int</span> <a class="code hl_function" href="comp_8cpp.html#ac4c0f8a8146b128f1b8f920e3a9c3b1e">main</a>() {</div>
<div class="line"> <span class="comment">// Initialize configuration and logging</span></div>
<div class="line"> Config::getInstance().loadConfig(<span class="stringliteral">&quot;path/to/your/config.yaml&quot;</span>);</div>
<div class="line"> <a class="code hl_function" href="class_probe_1_1_log_manager.html#adddabc01655308e7e62d8d3bd1b15386">Probe::LogManager::getInstance</a>().<a class="code hl_function" href="class_probe_1_1_log_manager.html#a5a12a541a9a7ca7f848ff385fb729c1d">getLogger</a>(<span class="stringliteral">&quot;main_log&quot;</span>); <span class="comment">// Initialize a logger</span></div>
<div class="line"> Probe::LogManager::getInstance().getLogger(<span class="stringliteral">&quot;main_log&quot;</span>); <span class="comment">// Initialize a logger</span></div>
<div class="line"> </div>
<div class="line"> <span class="keywordflow">try</span> {</div>
<div class="line"> <span class="comment">// Create a PolySolver for polytropic index n=1.5 and FE order 2</span></div>
<div class="line"> <a class="code hl_class" href="class_poly_solver.html">PolySolver</a> solver(1.5, 2);</div>
<div class="line"> PolySolver solver(1.5, 2);</div>
<div class="line"> solver.solve(); <span class="comment">// Solve the system</span></div>
<div class="line"> </div>
<div class="line"> <span class="comment">// Access the solution</span></div>
@@ -161,13 +161,10 @@ Solving for a Polytrope</h2>
<div class="line"> }</div>
<div class="line"> <span class="keywordflow">return</span> 0;</div>
<div class="line">}</div>
<div class="ttc" id="aclass_poly_solver_html"><div class="ttname"><a href="class_poly_solver.html">PolySolver</a></div><div class="ttdoc">Solves the Lane-Emden equation for a polytropic star using a mixed finite element method.</div><div class="ttdef"><b>Definition</b> <a href="poly_solver_8h_source.html#l00200">polySolver.h:200</a></div></div>
<div class="ttc" id="aclass_probe_1_1_log_manager_html_a5a12a541a9a7ca7f848ff385fb729c1d"><div class="ttname"><a href="class_probe_1_1_log_manager.html#a5a12a541a9a7ca7f848ff385fb729c1d">Probe::LogManager::getLogger</a></div><div class="ttdeci">quill::Logger * getLogger(const std::string &amp;loggerName)</div><div class="ttdoc">Get a logger by name.</div><div class="ttdef"><b>Definition</b> <a href="probe_8cpp_source.html#l00219">probe.cpp:219</a></div></div>
<div class="ttc" id="aclass_probe_1_1_log_manager_html_adddabc01655308e7e62d8d3bd1b15386"><div class="ttname"><a href="class_probe_1_1_log_manager.html#adddabc01655308e7e62d8d3bd1b15386">Probe::LogManager::getInstance</a></div><div class="ttdeci">static LogManager &amp; getInstance()</div><div class="ttdoc">Get the singleton instance of LogManager.</div><div class="ttdef"><b>Definition</b> <a href="probe_8h_source.html#l00103">probe.h:103</a></div></div>
<div class="ttc" id="acomp_8cpp_html_ac4c0f8a8146b128f1b8f920e3a9c3b1e"><div class="ttname"><a href="comp_8cpp.html#ac4c0f8a8146b128f1b8f920e3a9c3b1e">main</a></div><div class="ttdeci">int main(int argv, char *argc[])</div><div class="ttdef"><b>Definition</b> <a href="comp_8cpp_source.html#l00005">comp.cpp:5</a></div></div>
<div class="ttc" id="aconfig_8h_html"><div class="ttname"><a href="config_8h.html">config.h</a></div></div>
<div class="ttc" id="apoly_solver_8h_html"><div class="ttname"><a href="poly_solver_8h.html">polySolver.h</a></div></div>
<div class="ttc" id="aprobe_8h_html"><div class="ttname"><a href="probe_8h.html">probe.h</a></div></div>
<div class="ttc" id="atest_d_object_8cpp_html_ae66f6b31b5ad750f1fe042a706a4e3d4"><div class="ttname"><a href="test_d_object_8cpp.html#ae66f6b31b5ad750f1fe042a706a4e3d4">main</a></div><div class="ttdeci">int main()</div><div class="ttdef"><b>Definition</b> <a href="test_d_object_8cpp_source.html#l00007">testDObject.cpp:7</a></div></div>
</div><!-- fragment --><h2><a class="anchor" id="usage_composition"></a>
Managing Chemical Compositions</h2>
<p>The <code>Composition</code> class allows for defining and managing chemical compositions.</p>
@@ -175,14 +172,14 @@ Managing Chemical Compositions</h2>
<div class="line"><span class="preprocessor">#include &lt;iostream&gt;</span></div>
<div class="line"><span class="preprocessor">#include &lt;vector&gt;</span></div>
<div class="line"> </div>
<div class="line"><span class="keywordtype">int</span> <a class="code hl_function" href="test_d_object_8cpp.html#ae66f6b31b5ad750f1fe042a706a4e3d4">main</a>() {</div>
<div class="line"><span class="keywordtype">int</span> <a class="code hl_function" href="comp_8cpp.html#ac4c0f8a8146b128f1b8f920e3a9c3b1e">main</a>() {</div>
<div class="line"> <span class="keywordflow">try</span> {</div>
<div class="line"> <span class="comment">// Define symbols and their mass fractions</span></div>
<div class="line"> std::vector&lt;std::string&gt; symbols = {<span class="stringliteral">&quot;H-1&quot;</span>, <span class="stringliteral">&quot;He-4&quot;</span>}; <span class="comment">// Use specific isotopes</span></div>
<div class="line"> std::vector&lt;double&gt; mass_fractions = {0.75, 0.25};</div>
<div class="line"> </div>
<div class="line"> <span class="comment">// Create and finalize the composition</span></div>
<div class="line"> <a class="code hl_class" href="classcomposition_1_1_composition.html">composition::Composition</a> comp(symbols, mass_fractions);</div>
<div class="line"> composition::Composition comp(symbols, mass_fractions);</div>
<div class="line"> </div>
<div class="line"> <span class="comment">// Get mass fraction of a specific element</span></div>
<div class="line"> std::cout &lt;&lt; <span class="stringliteral">&quot;Mass fraction of H-1: &quot;</span> &lt;&lt; comp.getMassFraction(<span class="stringliteral">&quot;H-1&quot;</span>) &lt;&lt; std::endl;</div>
@@ -196,7 +193,6 @@ Managing Chemical Compositions</h2>
<div class="line"> }</div>
<div class="line"> <span class="keywordflow">return</span> 0;</div>
<div class="line">}</div>
<div class="ttc" id="aclasscomposition_1_1_composition_html"><div class="ttname"><a href="classcomposition_1_1_composition.html">composition::Composition</a></div><div class="ttdef"><b>Definition</b> <a href="composition_8h_source.html#l00211">composition.h:211</a></div></div>
<div class="ttc" id="acomposition_8h_html"><div class="ttname"><a href="composition_8h.html">composition.h</a></div></div>
</div><!-- fragment --><h2><a class="anchor" id="usage_network"></a>
Nuclear Reaction Networks</h2>
@@ -206,78 +202,57 @@ Nuclear Reaction Networks</h2>
<div class="line"><span class="preprocessor">#include &lt;iostream&gt;</span></div>
<div class="line"><span class="preprocessor">#include &lt;vector&gt;</span></div>
<div class="line"> </div>
<div class="line"><span class="keywordtype">int</span> <a class="code hl_function" href="test_d_object_8cpp.html#ae66f6b31b5ad750f1fe042a706a4e3d4">main</a>() {</div>
<div class="line"> <a class="code hl_class" href="classnn_approx8_1_1_approx8_network.html">nnApprox8::Approx8Network</a> approx8_net; <span class="comment">// Using the Approx8 network</span></div>
<div class="line"> approx8_net.<a class="code hl_function" href="classnn_approx8_1_1_approx8_network.html#a11523cc90db255a50a9cecc0d794e5f8">setStiff</a>(<span class="keyword">true</span>); <span class="comment">// Example: use stiff solver</span></div>
<div class="line"><span class="keywordtype">int</span> <a class="code hl_function" href="comp_8cpp.html#ac4c0f8a8146b128f1b8f920e3a9c3b1e">main</a>() {</div>
<div class="line"> nnApprox8::Approx8Network approx8_net; <span class="comment">// Using the Approx8 network</span></div>
<div class="line"> approx8_net.setStiff(<span class="keyword">true</span>); <span class="comment">// Example: use stiff solver</span></div>
<div class="line"> </div>
<div class="line"> <a class="code hl_struct" href="structnuclear_network_1_1_net_in.html">nuclearNetwork::NetIn</a> input;</div>
<div class="line"> input.<a class="code hl_variable" href="structnuclear_network_1_1_net_in.html#a4390cc59d2a9bd0d265163aa6e38c6c2">composition</a> = {0.7, 0.0, 0.28, 0.01, 0.005, 0.004, 0.0005, 0.0005}; <span class="comment">// H1, He3, He4, C12, N14, O16, Ne20, Mg24</span></div>
<div class="line"> input.<a class="code hl_variable" href="structnuclear_network_1_1_net_in.html#a9b9cbf0364977eca8425b191e34a7a97">temperature</a> = 1.5e7; <span class="comment">// K</span></div>
<div class="line"> input.<a class="code hl_variable" href="structnuclear_network_1_1_net_in.html#a987cb42b169b0e503515a8c62e242b97">density</a> = 150.0; <span class="comment">// g/cm^3</span></div>
<div class="line"> input.<a class="code hl_variable" href="structnuclear_network_1_1_net_in.html#ac204ff59b403cdbfef84cf8bb57e8eb2">tmax</a> = 1.0e10; <span class="comment">// s</span></div>
<div class="line"> input.<a class="code hl_variable" href="structnuclear_network_1_1_net_in.html#aa55b1d6cd458b69afb89cb096e661d9b">dt0</a> = 1.0e6; <span class="comment">// s</span></div>
<div class="line"> nuclearNetwork::NetIn input;</div>
<div class="line"> input.composition = {0.7, 0.0, 0.28, 0.01, 0.005, 0.004, 0.0005, 0.0005}; <span class="comment">// H1, He3, He4, C12, N14, O16, Ne20, Mg24</span></div>
<div class="line"> input.temperature = 1.5e7; <span class="comment">// K</span></div>
<div class="line"> input.density = 150.0; <span class="comment">// g/cm^3</span></div>
<div class="line"> input.tmax = 1.0e10; <span class="comment">// s</span></div>
<div class="line"> input.dt0 = 1.0e6; <span class="comment">// s</span></div>
<div class="line"> <span class="comment">// input.energy can also be set if needed</span></div>
<div class="line"> </div>
<div class="line"> <span class="keywordflow">try</span> {</div>
<div class="line"> <a class="code hl_struct" href="structnuclear_network_1_1_net_out.html">nuclearNetwork::NetOut</a> output = approx8_net.<a class="code hl_function" href="classnn_approx8_1_1_approx8_network.html#a31b8a20338d18123eca6e644f6e72366">evaluate</a>(input);</div>
<div class="line"> std::cout &lt;&lt; <span class="stringliteral">&quot;Number of steps: &quot;</span> &lt;&lt; output.<a class="code hl_variable" href="structnuclear_network_1_1_net_out.html#aee71b459be94519bac05986cfb47210a">num_steps</a> &lt;&lt; std::endl;</div>
<div class="line"> std::cout &lt;&lt; <span class="stringliteral">&quot;Final H-1 mass fraction (approx): &quot;</span> &lt;&lt; output.<a class="code hl_variable" href="structnuclear_network_1_1_net_out.html#a84c19198ae5cb48527b2d19f61fa160f">composition</a>[<a class="code hl_variable" href="structnn_approx8_1_1_net.html#a86ed8213cf2fffe5dcd7f06bdb6a6186">nnApprox8::Net::ih1</a>] &lt;&lt; std::endl;</div>
<div class="line"> nuclearNetwork::NetOut output = approx8_net.evaluate(input);</div>
<div class="line"> std::cout &lt;&lt; <span class="stringliteral">&quot;Number of steps: &quot;</span> &lt;&lt; output.num_steps &lt;&lt; std::endl;</div>
<div class="line"> std::cout &lt;&lt; <span class="stringliteral">&quot;Final H-1 mass fraction (approx): &quot;</span> &lt;&lt; output.composition[nnApprox8::Net::ih1] &lt;&lt; std::endl;</div>
<div class="line"> } <span class="keywordflow">catch</span> (<span class="keyword">const</span> std::exception&amp; e) {</div>
<div class="line"> std::cerr &lt;&lt; <span class="stringliteral">&quot;Network evaluation error: &quot;</span> &lt;&lt; e.what() &lt;&lt; std::endl;</div>
<div class="line"> }</div>
<div class="line"> <span class="keywordflow">return</span> 0;</div>
<div class="line">}</div>
<div class="ttc" id="aapprox8_8h_html"><div class="ttname"><a href="approx8_8h.html">approx8.h</a></div><div class="ttdoc">Header file for the Approx8 nuclear reaction network.</div></div>
<div class="ttc" id="aclassnn_approx8_1_1_approx8_network_html"><div class="ttname"><a href="classnn_approx8_1_1_approx8_network.html">nnApprox8::Approx8Network</a></div><div class="ttdoc">Class for the Approx8 nuclear reaction network.</div><div class="ttdef"><b>Definition</b> <a href="approx8_8h_source.html#l00297">approx8.h:297</a></div></div>
<div class="ttc" id="aclassnn_approx8_1_1_approx8_network_html_a11523cc90db255a50a9cecc0d794e5f8"><div class="ttname"><a href="classnn_approx8_1_1_approx8_network.html#a11523cc90db255a50a9cecc0d794e5f8">nnApprox8::Approx8Network::setStiff</a></div><div class="ttdeci">void setStiff(bool stiff)</div><div class="ttdoc">Sets whether the solver should use a stiff method.</div><div class="ttdef"><b>Definition</b> <a href="approx8_8cpp_source.html#l00505">approx8.cpp:505</a></div></div>
<div class="ttc" id="aclassnn_approx8_1_1_approx8_network_html_a31b8a20338d18123eca6e644f6e72366"><div class="ttname"><a href="classnn_approx8_1_1_approx8_network.html#a31b8a20338d18123eca6e644f6e72366">nnApprox8::Approx8Network::evaluate</a></div><div class="ttdeci">virtual nuclearNetwork::NetOut evaluate(const nuclearNetwork::NetIn &amp;netIn)</div><div class="ttdoc">Evaluates the nuclear network.</div><div class="ttdef"><b>Definition</b> <a href="approx8_8cpp_source.html#l00447">approx8.cpp:447</a></div></div>
<div class="ttc" id="anetwork_8h_html"><div class="ttname"><a href="network_8h.html">network.h</a></div></div>
<div class="ttc" id="astructnn_approx8_1_1_net_html_a86ed8213cf2fffe5dcd7f06bdb6a6186"><div class="ttname"><a href="structnn_approx8_1_1_net.html#a86ed8213cf2fffe5dcd7f06bdb6a6186">nnApprox8::Net::ih1</a></div><div class="ttdeci">static const int ih1</div><div class="ttdef"><b>Definition</b> <a href="approx8_8h_source.html#l00065">approx8.h:65</a></div></div>
<div class="ttc" id="astructnuclear_network_1_1_net_in_html"><div class="ttname"><a href="structnuclear_network_1_1_net_in.html">nuclearNetwork::NetIn</a></div><div class="ttdoc">Input structure for the network evaluation.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00048">network.h:48</a></div></div>
<div class="ttc" id="astructnuclear_network_1_1_net_in_html_a4390cc59d2a9bd0d265163aa6e38c6c2"><div class="ttname"><a href="structnuclear_network_1_1_net_in.html#a4390cc59d2a9bd0d265163aa6e38c6c2">nuclearNetwork::NetIn::composition</a></div><div class="ttdeci">std::vector&lt; double &gt; composition</div><div class="ttdoc">Composition of the network.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00049">network.h:49</a></div></div>
<div class="ttc" id="astructnuclear_network_1_1_net_in_html_a987cb42b169b0e503515a8c62e242b97"><div class="ttname"><a href="structnuclear_network_1_1_net_in.html#a987cb42b169b0e503515a8c62e242b97">nuclearNetwork::NetIn::density</a></div><div class="ttdeci">double density</div><div class="ttdoc">Density in g/cm^3.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00053">network.h:53</a></div></div>
<div class="ttc" id="astructnuclear_network_1_1_net_in_html_a9b9cbf0364977eca8425b191e34a7a97"><div class="ttname"><a href="structnuclear_network_1_1_net_in.html#a9b9cbf0364977eca8425b191e34a7a97">nuclearNetwork::NetIn::temperature</a></div><div class="ttdeci">double temperature</div><div class="ttdoc">Temperature in Kelvin.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00052">network.h:52</a></div></div>
<div class="ttc" id="astructnuclear_network_1_1_net_in_html_aa55b1d6cd458b69afb89cb096e661d9b"><div class="ttname"><a href="structnuclear_network_1_1_net_in.html#aa55b1d6cd458b69afb89cb096e661d9b">nuclearNetwork::NetIn::dt0</a></div><div class="ttdeci">double dt0</div><div class="ttdoc">Initial time step.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00051">network.h:51</a></div></div>
<div class="ttc" id="astructnuclear_network_1_1_net_in_html_ac204ff59b403cdbfef84cf8bb57e8eb2"><div class="ttname"><a href="structnuclear_network_1_1_net_in.html#ac204ff59b403cdbfef84cf8bb57e8eb2">nuclearNetwork::NetIn::tmax</a></div><div class="ttdeci">double tmax</div><div class="ttdoc">Maximum time.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00050">network.h:50</a></div></div>
<div class="ttc" id="astructnuclear_network_1_1_net_out_html"><div class="ttname"><a href="structnuclear_network_1_1_net_out.html">nuclearNetwork::NetOut</a></div><div class="ttdoc">Output structure for the network evaluation.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00071">network.h:71</a></div></div>
<div class="ttc" id="astructnuclear_network_1_1_net_out_html_a84c19198ae5cb48527b2d19f61fa160f"><div class="ttname"><a href="structnuclear_network_1_1_net_out.html#a84c19198ae5cb48527b2d19f61fa160f">nuclearNetwork::NetOut::composition</a></div><div class="ttdeci">std::vector&lt; double &gt; composition</div><div class="ttdoc">Composition of the network after evaluation.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00072">network.h:72</a></div></div>
<div class="ttc" id="astructnuclear_network_1_1_net_out_html_aee71b459be94519bac05986cfb47210a"><div class="ttname"><a href="structnuclear_network_1_1_net_out.html#aee71b459be94519bac05986cfb47210a">nuclearNetwork::NetOut::num_steps</a></div><div class="ttdeci">int num_steps</div><div class="ttdoc">Number of steps taken in the evaluation.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00073">network.h:73</a></div></div>
</div><!-- fragment --><h2><a class="anchor" id="usage_constants"></a>
Accessing Physical Constants</h2>
<p>The <code><a class="el" href="class_constants.html" title="Class to manage a collection of constants.">Constants</a></code> singleton provides access to a database of physical constants.</p>
<p>The <code>Constants</code> singleton provides access to a database of physical constants.</p>
<div class="fragment"><div class="line"><span class="preprocessor">#include &quot;<a class="code" href="const_8h.html">const.h</a>&quot;</span></div>
<div class="line"><span class="preprocessor">#include &lt;iostream&gt;</span></div>
<div class="line"> </div>
<div class="line"><span class="keywordtype">int</span> <a class="code hl_function" href="test_d_object_8cpp.html#ae66f6b31b5ad750f1fe042a706a4e3d4">main</a>() {</div>
<div class="line"> <a class="code hl_class" href="class_constants.html">Constants</a>&amp; consts = <a class="code hl_function" href="class_constants.html#ab302ea5420378c55a9e5f116d19ae0e2">Constants::getInstance</a>();</div>
<div class="line"> <span class="keywordflow">if</span> (consts.<a class="code hl_function" href="class_constants.html#ae276dfdc0ffe75a53e3842e33ab52630">isLoaded</a>()) {</div>
<div class="line"> <a class="code hl_struct" href="struct_constant.html">Constant</a> G = consts.<a class="code hl_function" href="class_constants.html#a36ddd7fe6857d1bbf6d1c84d4ed7bc19">get</a>(<span class="stringliteral">&quot;Gravitational constant&quot;</span>);</div>
<div class="line"> std::cout &lt;&lt; G.<a class="code hl_variable" href="struct_constant.html#a8d8d2a81e9a8f36dfa02b4d23a5be55c">name</a> &lt;&lt; <span class="stringliteral">&quot;: &quot;</span> &lt;&lt; G.<a class="code hl_variable" href="struct_constant.html#a3bda8d7fadd6fb2510fd39962a065a02">value</a> &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; G.<a class="code hl_variable" href="struct_constant.html#a2c46956a2d2b0ebf78ff99c5971130d2">unit</a> &lt;&lt; std::endl;</div>
<div class="line"><span class="keywordtype">int</span> <a class="code hl_function" href="comp_8cpp.html#ac4c0f8a8146b128f1b8f920e3a9c3b1e">main</a>() {</div>
<div class="line"> Constants&amp; consts = Constants::getInstance();</div>
<div class="line"> <span class="keywordflow">if</span> (consts.isLoaded()) {</div>
<div class="line"> Constant G = consts.get(<span class="stringliteral">&quot;Gravitational constant&quot;</span>);</div>
<div class="line"> std::cout &lt;&lt; G.name &lt;&lt; <span class="stringliteral">&quot;: &quot;</span> &lt;&lt; G.value &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; G.unit &lt;&lt; std::endl;</div>
<div class="line"> </div>
<div class="line"> <a class="code hl_struct" href="struct_constant.html">Constant</a> c = consts[<span class="stringliteral">&quot;Speed of light in vacuum&quot;</span>]; <span class="comment">// Can also use operator[]</span></div>
<div class="line"> Constant c = consts[<span class="stringliteral">&quot;Speed of light in vacuum&quot;</span>]; <span class="comment">// Can also use operator[]</span></div>
<div class="line"> std::cout &lt;&lt; c.name &lt;&lt; <span class="stringliteral">&quot;: &quot;</span> &lt;&lt; c.value &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; c.unit &lt;&lt; std::endl;</div>
<div class="line"> } <span class="keywordflow">else</span> {</div>
<div class="line"> std::cerr &lt;&lt; <span class="stringliteral">&quot;Failed to load constants.&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"> }</div>
<div class="line"> <span class="keywordflow">return</span> 0;</div>
<div class="line">}</div>
<div class="ttc" id="aclass_constants_html"><div class="ttname"><a href="class_constants.html">Constants</a></div><div class="ttdoc">Class to manage a collection of constants.</div><div class="ttdef"><b>Definition</b> <a href="const_8h_source.html#l00066">const.h:66</a></div></div>
<div class="ttc" id="aclass_constants_html_a36ddd7fe6857d1bbf6d1c84d4ed7bc19"><div class="ttname"><a href="class_constants.html#a36ddd7fe6857d1bbf6d1c84d4ed7bc19">Constants::get</a></div><div class="ttdeci">Constant get(const std::string &amp;key) const</div><div class="ttdoc">Get a constant by key.</div><div class="ttdef"><b>Definition</b> <a href="const_8cpp_source.html#l00041">const.cpp:41</a></div></div>
<div class="ttc" id="aclass_constants_html_ab302ea5420378c55a9e5f116d19ae0e2"><div class="ttname"><a href="class_constants.html#ab302ea5420378c55a9e5f116d19ae0e2">Constants::getInstance</a></div><div class="ttdeci">static Constants &amp; getInstance()</div><div class="ttdoc">get instance of constants singelton</div><div class="ttdef"><b>Definition</b> <a href="const_8h_source.html#l00102">const.h:102</a></div></div>
<div class="ttc" id="aclass_constants_html_ae276dfdc0ffe75a53e3842e33ab52630"><div class="ttname"><a href="class_constants.html#ae276dfdc0ffe75a53e3842e33ab52630">Constants::isLoaded</a></div><div class="ttdeci">bool isLoaded()</div><div class="ttdoc">Check if constants are loaded.</div><div class="ttdef"><b>Definition</b> <a href="const_8h_source.html#l00111">const.h:111</a></div></div>
<div class="ttc" id="aconst_8h_html"><div class="ttname"><a href="const_8h.html">const.h</a></div></div>
<div class="ttc" id="astruct_constant_html"><div class="ttname"><a href="struct_constant.html">Constant</a></div><div class="ttdoc">Structure to hold a constant&#39;s details.</div><div class="ttdef"><b>Definition</b> <a href="const_8h_source.html#l00034">const.h:34</a></div></div>
<div class="ttc" id="astruct_constant_html_a2c46956a2d2b0ebf78ff99c5971130d2"><div class="ttname"><a href="struct_constant.html#a2c46956a2d2b0ebf78ff99c5971130d2">Constant::unit</a></div><div class="ttdeci">const std::string unit</div><div class="ttdoc">Unit of the constant.</div><div class="ttdef"><b>Definition</b> <a href="const_8h_source.html#l00038">const.h:38</a></div></div>
<div class="ttc" id="astruct_constant_html_a3bda8d7fadd6fb2510fd39962a065a02"><div class="ttname"><a href="struct_constant.html#a3bda8d7fadd6fb2510fd39962a065a02">Constant::value</a></div><div class="ttdeci">const double value</div><div class="ttdoc">Value of the constant.</div><div class="ttdef"><b>Definition</b> <a href="const_8h_source.html#l00036">const.h:36</a></div></div>
<div class="ttc" id="astruct_constant_html_a8d8d2a81e9a8f36dfa02b4d23a5be55c"><div class="ttname"><a href="struct_constant.html#a8d8d2a81e9a8f36dfa02b4d23a5be55c">Constant::name</a></div><div class="ttdeci">const std::string name</div><div class="ttdoc">Name of the constant.</div><div class="ttdef"><b>Definition</b> <a href="const_8h_source.html#l00035">const.h:35</a></div></div>
</div><!-- fragment --><h2><a class="anchor" id="usage_config"></a>
Configuration Management</h2>
<p>The <code><a class="el" href="class_config.html" title="Singleton class to manage configuration settings loaded from a YAML file.">Config</a></code> singleton manages settings from a YAML configuration file.</p>
<p>The <code>Config</code> singleton manages settings from a YAML configuration file.</p>
<div class="fragment"><div class="line"><span class="preprocessor">#include &quot;<a class="code" href="config_8h.html">config.h</a>&quot;</span></div>
<div class="line"><span class="preprocessor">#include &lt;iostream&gt;</span></div>
<div class="line"> </div>
<div class="line"><span class="keywordtype">int</span> <a class="code hl_function" href="test_d_object_8cpp.html#ae66f6b31b5ad750f1fe042a706a4e3d4">main</a>() {</div>
<div class="line"> <a class="code hl_class" href="class_config.html">Config</a>&amp; config = Config::getInstance();</div>
<div class="line"><span class="keywordtype">int</span> <a class="code hl_function" href="comp_8cpp.html#ac4c0f8a8146b128f1b8f920e3a9c3b1e">main</a>() {</div>
<div class="line"> Config&amp; config = Config::getInstance();</div>
<div class="line"> <span class="keywordflow">if</span> (config.loadConfig(<span class="stringliteral">&quot;path/to/your/config.yaml&quot;</span>)) {</div>
<div class="line"> <span class="comment">// Get a string value, with a default if not found</span></div>
<div class="line"> std::string outputPath = config.get&lt;std::string&gt;(<span class="stringliteral">&quot;Output:Path&quot;</span>, <span class="stringliteral">&quot;./output/&quot;</span>);</div>
@@ -291,19 +266,18 @@ Configuration Management</h2>
<div class="line"> }</div>
<div class="line"> <span class="keywordflow">return</span> 0;</div>
<div class="line">}</div>
<div class="ttc" id="aclass_config_html"><div class="ttname"><a href="class_config.html">Config</a></div><div class="ttdoc">Singleton class to manage configuration settings loaded from a YAML file.</div></div>
</div><!-- fragment --><h2><a class="anchor" id="usage_logging"></a>
Logging</h2>
<p>The <code><a class="el" href="class_probe_1_1_log_manager.html" title="Class to manage logging operations.">Probe::LogManager</a></code> provides a way to manage and use loggers.</p>
<p>The <code>Probe::LogManager</code> provides a way to manage and use loggers.</p>
<div class="fragment"><div class="line"><span class="preprocessor">#include &quot;<a class="code" href="probe_8h.html">probe.h</a>&quot;</span></div>
<div class="line"><span class="preprocessor">#include &quot;<a class="code" href="config_8h.html">config.h</a>&quot;</span> <span class="comment">// Often used to configure logging</span></div>
<div class="line"> </div>
<div class="line"><span class="keywordtype">int</span> <a class="code hl_function" href="test_d_object_8cpp.html#ae66f6b31b5ad750f1fe042a706a4e3d4">main</a>() {</div>
<div class="line"><span class="keywordtype">int</span> <a class="code hl_function" href="comp_8cpp.html#ac4c0f8a8146b128f1b8f920e3a9c3b1e">main</a>() {</div>
<div class="line"> <span class="comment">// Assuming config is loaded and might define log file, level etc.</span></div>
<div class="line"> <span class="comment">// Config::getInstance().loadConfig(&quot;config.yaml&quot;);</span></div>
<div class="line"> </div>
<div class="line"> <a class="code hl_class" href="class_probe_1_1_log_manager.html">Probe::LogManager</a>&amp; logManager = <a class="code hl_function" href="class_probe_1_1_log_manager.html#adddabc01655308e7e62d8d3bd1b15386">Probe::LogManager::getInstance</a>();</div>
<div class="line"> quill::Logger* mainLogger = logManager.<a class="code hl_function" href="class_probe_1_1_log_manager.html#a5a12a541a9a7ca7f848ff385fb729c1d">getLogger</a>(<span class="stringliteral">&quot;main_app_log&quot;</span>); <span class="comment">// Get or create logger</span></div>
<div class="line"> Probe::LogManager&amp; logManager = Probe::LogManager::getInstance();</div>
<div class="line"> quill::Logger* mainLogger = logManager.getLogger(<span class="stringliteral">&quot;main_app_log&quot;</span>); <span class="comment">// Get or create logger</span></div>
<div class="line"> </div>
<div class="line"> <span class="comment">// Example: Create a new file logger if not configured through a central mechanism</span></div>
<div class="line"> <span class="comment">// quill::Logger* fileLogger = logManager.newFileLogger(&quot;app_trace.log&quot;, &quot;trace_log&quot;);</span></div>
@@ -314,19 +288,18 @@ Logging</h2>
<div class="line"> </div>
<div class="line"> <span class="keywordflow">return</span> 0;</div>
<div class="line">}</div>
<div class="ttc" id="aclass_probe_1_1_log_manager_html"><div class="ttname"><a href="class_probe_1_1_log_manager.html">Probe::LogManager</a></div><div class="ttdoc">Class to manage logging operations.</div><div class="ttdef"><b>Definition</b> <a href="probe_8h_source.html#l00079">probe.h:79</a></div></div>
</div><!-- fragment --><h2><a class="anchor" id="usage_eos"></a>
Equation of State (EOS)</h2>
<p>The <code><a class="el" href="class_eos_i_o.html" title="Handles the input/output operations for EOS tables.">EosIO</a></code> class loads EOS tables, and the <code>helmholtz</code> namespace provides functions to use them, for example, the Helmholtz EOS.</p>
<p>The <code>EosIO</code> class loads EOS tables, and the <code>helmholtz</code> namespace provides functions to use them, for example, the Helmholtz EOS.</p>
<div class="fragment"><div class="line"><span class="preprocessor">#include &quot;<a class="code" href="eos_i_o_8h.html">eosIO.h</a>&quot;</span></div>
<div class="line"><span class="preprocessor">#include &quot;<a class="code" href="helm_8h.html">helm.h</a>&quot;</span></div>
<div class="line"><span class="preprocessor">#include &lt;iostream&gt;</span></div>
<div class="line"> </div>
<div class="line"><span class="keywordtype">int</span> <a class="code hl_function" href="test_d_object_8cpp.html#ae66f6b31b5ad750f1fe042a706a4e3d4">main</a>() {</div>
<div class="line"><span class="keywordtype">int</span> <a class="code hl_function" href="comp_8cpp.html#ac4c0f8a8146b128f1b8f920e3a9c3b1e">main</a>() {</div>
<div class="line"> <span class="keywordflow">try</span> {</div>
<div class="line"> <span class="comment">// Load the Helmholtz EOS table</span></div>
<div class="line"> <a class="code hl_class" href="class_eos_i_o.html">EosIO</a> helm_eos_io(<span class="stringliteral">&quot;path/to/helm_table.dat&quot;</span>); <span class="comment">// Replace with actual path</span></div>
<div class="line"> <a class="code hl_typedef" href="eos_i_o_8h.html#a1aa7735934336ab2646c539c4370dcd5">EOSTable</a>&amp; table_variant = helm_eos_io.getTable();</div>
<div class="line"> EosIO helm_eos_io(<span class="stringliteral">&quot;path/to/helm_table.dat&quot;</span>); <span class="comment">// Replace with actual path</span></div>
<div class="line"> EOSTable&amp; table_variant = helm_eos_io.getTable();</div>
<div class="line"> </div>
<div class="line"> <span class="comment">// Assuming it&#39;s a HELMTable, get it (add error checking in real code)</span></div>
<div class="line"> <span class="keyword">auto</span>* helm_table_ptr = std::get_if&lt;std::unique_ptr&lt;helmholtz::HELMTable&gt;&gt;(&amp;table_variant);</div>
@@ -334,20 +307,20 @@ Equation of State (EOS)</h2>
<div class="line"> std::cerr &lt;&lt; <span class="stringliteral">&quot;Failed to load or access HELM table.&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"> <span class="keywordflow">return</span> 1;</div>
<div class="line"> }</div>
<div class="line"> <span class="keyword">const</span> <a class="code hl_struct" href="structhelmholtz_1_1_h_e_l_m_table.html">helmholtz::HELMTable</a>&amp; table = **helm_table_ptr;</div>
<div class="line"> <span class="keyword">const</span> helmholtz::HELMTable&amp; table = **helm_table_ptr;</div>
<div class="line"> </div>
<div class="line"> <span class="comment">// Define input conditions</span></div>
<div class="line"> <a class="code hl_struct" href="structhelmholtz_1_1_e_o_s_input.html">helmholtz::EOSInput</a> input;</div>
<div class="line"> input.<a class="code hl_variable" href="structhelmholtz_1_1_e_o_s_input.html#aaf02a656d4891857970b6bdf366a325c">T</a> = 1.0e7; <span class="comment">// Temperature in K</span></div>
<div class="line"> input.<a class="code hl_variable" href="structhelmholtz_1_1_e_o_s_input.html#ac049842880c38e1024929f14606b84d8">rho</a> = 100.0; <span class="comment">// Density in g/cm^3</span></div>
<div class="line"> input.<a class="code hl_variable" href="structhelmholtz_1_1_e_o_s_input.html#ad0bf9309ddc7f784eca932a02f0af8b8">abar</a> = 1.0; <span class="comment">// Mean atomic mass (e.g., for pure hydrogen)</span></div>
<div class="line"> input.<a class="code hl_variable" href="structhelmholtz_1_1_e_o_s_input.html#a982c267134079bb6315f274a5bee2209">zbar</a> = 1.0; <span class="comment">// Mean atomic number (e.g., for pure hydrogen)</span></div>
<div class="line"> helmholtz::EOSInput input;</div>
<div class="line"> input.T = 1.0e7; <span class="comment">// Temperature in K</span></div>
<div class="line"> input.rho = 100.0; <span class="comment">// Density in g/cm^3</span></div>
<div class="line"> input.abar = 1.0; <span class="comment">// Mean atomic mass (e.g., for pure hydrogen)</span></div>
<div class="line"> input.zbar = 1.0; <span class="comment">// Mean atomic number (e.g., for pure hydrogen)</span></div>
<div class="line"> </div>
<div class="line"> <span class="comment">// Get EOS results</span></div>
<div class="line"> <a class="code hl_struct" href="structhelmholtz_1_1_e_o_s.html">helmholtz::EOS</a> results = <a class="code hl_function" href="namespacehelmholtz.html#ad2176033ca3ac4e5dc65f281477b94c2">helmholtz::get_helm_EOS</a>(input, table);</div>
<div class="line"> helmholtz::EOS results = helmholtz::get_helm_EOS(input, table);</div>
<div class="line"> </div>
<div class="line"> std::cout &lt;&lt; <span class="stringliteral">&quot;Total Pressure (Ptot): &quot;</span> &lt;&lt; results.<a class="code hl_variable" href="structhelmholtz_1_1_e_o_s.html#ae05c873c3ee103414fef99367e17d381">ptot</a> &lt;&lt; <span class="stringliteral">&quot; dyne/cm^2&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"> std::cout &lt;&lt; <span class="stringliteral">&quot;Total Energy (Etot): &quot;</span> &lt;&lt; results.<a class="code hl_variable" href="structhelmholtz_1_1_e_o_s.html#a1aa2caf18b3701c6f9515fd9f56d9a97">etot</a> &lt;&lt; <span class="stringliteral">&quot; erg/g&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"> std::cout &lt;&lt; <span class="stringliteral">&quot;Total Pressure (Ptot): &quot;</span> &lt;&lt; results.ptot &lt;&lt; <span class="stringliteral">&quot; dyne/cm^2&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"> std::cout &lt;&lt; <span class="stringliteral">&quot;Total Energy (Etot): &quot;</span> &lt;&lt; results.etot &lt;&lt; <span class="stringliteral">&quot; erg/g&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"> </div>
<div class="line"> } <span class="keywordflow">catch</span> (<span class="keyword">const</span> std::exception&amp; e) {</div>
<div class="line"> std::cerr &lt;&lt; <span class="stringliteral">&quot;EOS error: &quot;</span> &lt;&lt; e.what() &lt;&lt; std::endl;</div>
@@ -355,31 +328,19 @@ Equation of State (EOS)</h2>
<div class="line"> }</div>
<div class="line"> <span class="keywordflow">return</span> 0;</div>
<div class="line">}</div>
<div class="ttc" id="aclass_eos_i_o_html"><div class="ttname"><a href="class_eos_i_o.html">EosIO</a></div><div class="ttdoc">Handles the input/output operations for EOS tables.</div><div class="ttdef"><b>Definition</b> <a href="eos_i_o_8h_source.html#l00049">eosIO.h:49</a></div></div>
<div class="ttc" id="aeos_i_o_8h_html"><div class="ttname"><a href="eos_i_o_8h.html">eosIO.h</a></div></div>
<div class="ttc" id="aeos_i_o_8h_html_a1aa7735934336ab2646c539c4370dcd5"><div class="ttname"><a href="eos_i_o_8h.html#a1aa7735934336ab2646c539c4370dcd5">EOSTable</a></div><div class="ttdeci">std::variant&lt; std::unique_ptr&lt; helmholtz::HELMTable &gt; &gt; EOSTable</div><div class="ttdef"><b>Definition</b> <a href="eos_i_o_8h_source.html#l00031">eosIO.h:31</a></div></div>
<div class="ttc" id="ahelm_8h_html"><div class="ttname"><a href="helm_8h.html">helm.h</a></div></div>
<div class="ttc" id="anamespacehelmholtz_html_ad2176033ca3ac4e5dc65f281477b94c2"><div class="ttname"><a href="namespacehelmholtz.html#ad2176033ca3ac4e5dc65f281477b94c2">helmholtz::get_helm_EOS</a></div><div class="ttdeci">EOS get_helm_EOS(EOSInput &amp;q, const HELMTable &amp;table)</div><div class="ttdoc">Calculate the Helmholtz EOS components.</div><div class="ttdef"><b>Definition</b> <a href="helm_8cpp_source.html#l00236">helm.cpp:236</a></div></div>
<div class="ttc" id="astructhelmholtz_1_1_e_o_s_html"><div class="ttname"><a href="structhelmholtz_1_1_e_o_s.html">helmholtz::EOS</a></div><div class="ttdoc">Structure to hold the output parameters and derivatives of the EOS calculation.</div><div class="ttdef"><b>Definition</b> <a href="helm_8h_source.html#l00311">helm.h:312</a></div></div>
<div class="ttc" id="astructhelmholtz_1_1_e_o_s_html_a1aa2caf18b3701c6f9515fd9f56d9a97"><div class="ttname"><a href="structhelmholtz_1_1_e_o_s.html#a1aa2caf18b3701c6f9515fd9f56d9a97">helmholtz::EOS::etot</a></div><div class="ttdeci">double etot</div><div class="ttdef"><b>Definition</b> <a href="helm_8h_source.html#l00316">helm.h:316</a></div></div>
<div class="ttc" id="astructhelmholtz_1_1_e_o_s_html_ae05c873c3ee103414fef99367e17d381"><div class="ttname"><a href="structhelmholtz_1_1_e_o_s.html#ae05c873c3ee103414fef99367e17d381">helmholtz::EOS::ptot</a></div><div class="ttdeci">double ptot</div><div class="ttdef"><b>Definition</b> <a href="helm_8h_source.html#l00315">helm.h:315</a></div></div>
<div class="ttc" id="astructhelmholtz_1_1_e_o_s_input_html"><div class="ttname"><a href="structhelmholtz_1_1_e_o_s_input.html">helmholtz::EOSInput</a></div><div class="ttdoc">Structure to hold the input parameters for the EOS calculation.</div><div class="ttdef"><b>Definition</b> <a href="helm_8h_source.html#l00289">helm.h:290</a></div></div>
<div class="ttc" id="astructhelmholtz_1_1_e_o_s_input_html_a982c267134079bb6315f274a5bee2209"><div class="ttname"><a href="structhelmholtz_1_1_e_o_s_input.html#a982c267134079bb6315f274a5bee2209">helmholtz::EOSInput::zbar</a></div><div class="ttdeci">double zbar</div><div class="ttdoc">Mean atomic number.</div><div class="ttdef"><b>Definition</b> <a href="helm_8h_source.html#l00294">helm.h:294</a></div></div>
<div class="ttc" id="astructhelmholtz_1_1_e_o_s_input_html_aaf02a656d4891857970b6bdf366a325c"><div class="ttname"><a href="structhelmholtz_1_1_e_o_s_input.html#aaf02a656d4891857970b6bdf366a325c">helmholtz::EOSInput::T</a></div><div class="ttdeci">double T</div><div class="ttdoc">Temperature.</div><div class="ttdef"><b>Definition</b> <a href="helm_8h_source.html#l00291">helm.h:291</a></div></div>
<div class="ttc" id="astructhelmholtz_1_1_e_o_s_input_html_ac049842880c38e1024929f14606b84d8"><div class="ttname"><a href="structhelmholtz_1_1_e_o_s_input.html#ac049842880c38e1024929f14606b84d8">helmholtz::EOSInput::rho</a></div><div class="ttdeci">double rho</div><div class="ttdoc">Density.</div><div class="ttdef"><b>Definition</b> <a href="helm_8h_source.html#l00292">helm.h:292</a></div></div>
<div class="ttc" id="astructhelmholtz_1_1_e_o_s_input_html_ad0bf9309ddc7f784eca932a02f0af8b8"><div class="ttname"><a href="structhelmholtz_1_1_e_o_s_input.html#ad0bf9309ddc7f784eca932a02f0af8b8">helmholtz::EOSInput::abar</a></div><div class="ttdeci">double abar</div><div class="ttdoc">Mean atomic mass.</div><div class="ttdef"><b>Definition</b> <a href="helm_8h_source.html#l00293">helm.h:293</a></div></div>
<div class="ttc" id="astructhelmholtz_1_1_h_e_l_m_table_html"><div class="ttname"><a href="structhelmholtz_1_1_h_e_l_m_table.html">helmholtz::HELMTable</a></div><div class="ttdoc">Structure to hold the Helmholtz EOS table data.</div><div class="ttdef"><b>Definition</b> <a href="helm_8h_source.html#l00064">helm.h:65</a></div></div>
</div><!-- fragment --><h2><a class="anchor" id="usage_meshio"></a>
Mesh Handling</h2>
<p>The <code><a class="el" href="class_mesh_i_o.html" title="Class for handling mesh input/output operations.">MeshIO</a></code> class facilitates loading and managing computational meshes.</p>
<p>The <code>MeshIO</code> class facilitates loading and managing computational meshes.</p>
<div class="fragment"><div class="line"><span class="preprocessor">#include &quot;<a class="code" href="mesh_i_o_8h.html">meshIO.h</a>&quot;</span></div>
<div class="line"><span class="preprocessor">#include &quot;mfem.hpp&quot;</span> <span class="comment">// For mfem::Mesh</span></div>
<div class="line"><span class="preprocessor">#include &lt;iostream&gt;</span></div>
<div class="line"> </div>
<div class="line"><span class="keywordtype">int</span> <a class="code hl_function" href="test_d_object_8cpp.html#ae66f6b31b5ad750f1fe042a706a4e3d4">main</a>() {</div>
<div class="line"><span class="keywordtype">int</span> <a class="code hl_function" href="comp_8cpp.html#ac4c0f8a8146b128f1b8f920e3a9c3b1e">main</a>() {</div>
<div class="line"> <span class="keywordflow">try</span> {</div>
<div class="line"> <span class="comment">// Initialize MeshIO with a mesh file and a scale factor</span></div>
<div class="line"> <a class="code hl_class" href="class_mesh_i_o.html">MeshIO</a> mesh_handler(<span class="stringliteral">&quot;path/to/your/mesh.msh&quot;</span>, 1.0); <span class="comment">// Replace with actual path</span></div>
<div class="line"> MeshIO mesh_handler(<span class="stringliteral">&quot;path/to/your/mesh.msh&quot;</span>, 1.0); <span class="comment">// Replace with actual path</span></div>
<div class="line"> </div>
<div class="line"> <span class="keywordflow">if</span> (mesh_handler.IsLoaded()) {</div>
<div class="line"> mfem::Mesh&amp; mesh = mesh_handler.GetMesh();</div>
@@ -399,22 +360,21 @@ Mesh Handling</h2>
<div class="line"> }</div>
<div class="line"> <span class="keywordflow">return</span> 0;</div>
<div class="line">}</div>
<div class="ttc" id="aclass_mesh_i_o_html"><div class="ttname"><a href="class_mesh_i_o.html">MeshIO</a></div><div class="ttdoc">Class for handling mesh input/output operations.</div><div class="ttdef"><b>Definition</b> <a href="mesh_i_o_8h_source.html#l00029">meshIO.h:30</a></div></div>
<div class="ttc" id="amesh_i_o_8h_html"><div class="ttname"><a href="mesh_i_o_8h.html">meshIO.h</a></div></div>
</div><!-- fragment --><h1><a class="anchor" id="modules_sec"></a>
Key Modules and Components</h1>
<p>4DSSE is organized into several key modules:</p>
<ul>
<li><b>Polytrope Solver (<code><a class="el" href="poly_solver_8h.html">polySolver.h</a></code>, <code><a class="el" href="polytrope_operator_8h.html">polytropeOperator.h</a></code>):</b> Provides tools to solve the Lane-Emden equation for polytropic stellar structures using a mixed finite element method. <code><a class="el" href="class_polytrope_operator.html" title="Represents the coupled nonlinear operator for the polytropic system.">PolytropeOperator</a></code> defines the nonlinear system and its Jacobian, while <code><a class="el" href="class_poly_solver.html" title="Solves the Lane-Emden equation for a polytropic star using a mixed finite element method.">PolySolver</a></code> orchestrates the solution process. The <code><a class="el" href="class_schur_compliment.html" title="Represents the Schur complement operator used in the solution process.">SchurCompliment</a></code> and <code><a class="el" href="class_g_m_r_e_s_inverter.html" title="Provides an approximate inverse of the SchurCompliment operator using GMRES.">GMRESInverter</a></code> classes are helper components for the linear algebra involved.</li>
<li><b>Equation of State (EOS) (<code><a class="el" href="helm_8h.html">helm.h</a></code>, <code><a class="el" href="eos_i_o_8h.html">eosIO.h</a></code>):</b> Manages Equation of State data. <code><a class="el" href="helm_8h.html">helm.h</a></code> provides an implementation of the Helmholtz EOS (Timmes &amp; Swesty 2000), including structures for table data (<code>HELMTable</code>), input parameters (<code>EOSInput</code>), and output results (<code>EOS</code>). It also defines functions for reading tables and calculating EOS quantities. <code><a class="el" href="eos_i_o_8h.html">eosIO.h</a></code> provides the <code><a class="el" href="class_eos_i_o.html" title="Handles the input/output operations for EOS tables.">EosIO</a></code> class for loading EOS tables from files, currently supporting the HELM table format.</li>
<li><b>Polytrope Solver (<code><a class="el" href="poly_solver_8h.html">polySolver.h</a></code>, <code><a class="el" href="polytrope_operator_8h.html">polytropeOperator.h</a></code>):</b> Provides tools to solve the Lane-Emden equation for polytropic stellar structures using a mixed finite element method. <code>PolytropeOperator</code> defines the nonlinear system and its Jacobian, while <code>PolySolver</code> orchestrates the solution process. The <code>SchurCompliment</code> and <code>GMRESInverter</code> classes are helper components for the linear algebra involved.</li>
<li><b>Equation of State (EOS) (<code><a class="el" href="helm_8h.html">helm.h</a></code>, <code><a class="el" href="eos_i_o_8h.html">eosIO.h</a></code>):</b> Manages Equation of State data. <code><a class="el" href="helm_8h.html">helm.h</a></code> provides an implementation of the Helmholtz EOS (Timmes &amp; Swesty 2000), including structures for table data (<code>HELMTable</code>), input parameters (<code>EOSInput</code>), and output results (<code>EOS</code>). It also defines functions for reading tables and calculating EOS quantities. <code><a class="el" href="eos_i_o_8h.html">eosIO.h</a></code> provides the <code>EosIO</code> class for loading EOS tables from files, currently supporting the HELM table format.</li>
<li><b>Chemical Composition (<code><a class="el" href="composition_8h.html">composition.h</a></code>, <code>atomicSpecies.h</code>):</b> Manages chemical compositions, allowing representation in mass or number fractions. It interfaces with <code>atomicSpecies.h</code> which provides a database of atomic species properties (based on AME2020).</li>
<li><b>Nuclear Reaction Networks (<code><a class="el" href="network_8h.html">network.h</a></code>, <code><a class="el" href="approx8_8h.html" title="Header file for the Approx8 nuclear reaction network.">approx8.h</a></code>):</b> Defines a base <code>Network</code> class for nuclear reaction network calculations. <code><a class="el" href="approx8_8h.html" title="Header file for the Approx8 nuclear reaction network.">approx8.h</a></code> provides a specific implementation, <code>Approx8Network</code>, for an 8-isotope network (H1, He3, He4, C12, N14, O16, Ne20, Mg24) based on Frank Timmes' "aprox8". It includes functions for individual reaction rates and uses Boost.Numeric.Odeint for solving the ODE system.</li>
<li><b>Physical <a class="el" href="class_constants.html" title="Class to manage a collection of constants.">Constants</a> (<code><a class="el" href="const_8h.html">const.h</a></code>):</b> A singleton class <code><a class="el" href="class_constants.html" title="Class to manage a collection of constants.">Constants</a></code> that loads and provides access to a wide range of physical constants with their values, uncertainties, units, and references.</li>
<li><b>Configuration Management (<code><a class="el" href="config_8h.html">config.h</a></code>):</b> A singleton class <code><a class="el" href="class_config.html" title="Singleton class to manage configuration settings loaded from a YAML file.">Config</a></code> for loading and accessing application settings from YAML configuration files.</li>
<li><b>Probing and Logging (<code><a class="el" href="probe_8h.html">probe.h</a></code>):</b> The <code><a class="el" href="namespace_probe.html" title="The Probe namespace contains utility functions for debugging and logging.">Probe</a></code> namespace offers utility functions for debugging, such as GLVis visualization (<code>glVisView</code>), and a <code>LogManager</code> for handling application-wide logging using the Quill library.</li>
<li><b>Mesh I/O (<code><a class="el" href="mesh_i_o_8h.html">meshIO.h</a></code>):</b> The <code><a class="el" href="class_mesh_i_o.html" title="Class for handling mesh input/output operations.">MeshIO</a></code> class handles loading and basic manipulation (e.g., scaling) of computational meshes using MFEM's <code>mfem::Mesh</code>. It ensures that meshes are correctly loaded and accessible.</li>
<li><b>Physical Constants (<code><a class="el" href="const_8h.html">const.h</a></code>):</b> A singleton class <code>Constants</code> that loads and provides access to a wide range of physical constants with their values, uncertainties, units, and references.</li>
<li><b>Configuration Management (<code><a class="el" href="config_8h.html">config.h</a></code>):</b> A singleton class <code>Config</code> for loading and accessing application settings from YAML configuration files.</li>
<li><b>Probing and Logging (<code><a class="el" href="probe_8h.html">probe.h</a></code>):</b> The <code>Probe</code> namespace offers utility functions for debugging, such as GLVis visualization (<code>glVisView</code>), and a <code>LogManager</code> for handling application-wide logging using the Quill library.</li>
<li><b>Mesh I/O (<code><a class="el" href="mesh_i_o_8h.html">meshIO.h</a></code>):</b> The <code>MeshIO</code> class handles loading and basic manipulation (e.g., scaling) of computational meshes using MFEM's <code>mfem::Mesh</code>. It ensures that meshes are correctly loaded and accessible.</li>
<li><b>Integrators (<code><a class="el" href="integrators_8h.html" title="A collection of utilities for working with MFEM and solving the lane-emden equation.">integrators.h</a></code>):</b> (Details inferred) Likely contains custom MFEM integrators or coefficients used in the finite element formulations.</li>
<li><b>Custom Types (<code><a class="el" href="4_d_s_t_a_r_types_8h.html">4DSTARTypes.h</a></code>):</b> Defines project-specific data type aliases within the <code><a class="el" href="namespace_s_s_e.html">SSE</a></code> namespace, primarily for simplifying common <code>std::pair</code> combinations involving <code>mfem::Array&lt;int&gt;</code> and <code>mfem::Array&lt;double&gt;</code>. These include <code><a class="el" href="namespace_s_s_e.html#a49c89754543e0562250f33c3716689d8">SSE::MFEMArrayPair</a></code> and <code><a class="el" href="namespace_s_s_e.html#a615e866fff824677bba4a6f23d15b446">SSE::MFEMArrayPairSet</a></code>, often used for managing collections of MFEM degree-of-freedom lists and their corresponding values, especially for boundary conditions.</li>
<li><b>Custom Types (<code><a class="el" href="4_d_s_t_a_r_types_8h.html">4DSTARTypes.h</a></code>):</b> Defines project-specific data type aliases within the <code>SSE</code> namespace, primarily for simplifying common <code>std::pair</code> combinations involving <code>mfem::Array&lt;int&gt;</code> and <code>mfem::Array&lt;double&gt;</code>. These include <code>SSE::MFEMArrayPair</code> and <code>SSE::MFEMArrayPairSet</code>, often used for managing collections of MFEM degree-of-freedom lists and their corresponding values, especially for boundary conditions.</li>
</ul>
<h1><a class="anchor" id="future_dev"></a>
Future Development</h1>

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