diff --git a/docs/html/annotated.html b/docs/html/annotated.html index 814cf35..b9be07c 100644 --- a/docs/html/annotated.html +++ b/docs/html/annotated.html @@ -103,59 +103,59 @@ $(function(){initNavTree('annotated.html',''); initResizable(true); });
Here are the classes, structs, unions and interfaces with brief descriptions:
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[detail level 12]
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[detail level 1234]
 ▼Ncomposition
 CComposition
 CCompositionEntryRepresents an entry in the composition with a symbol and mass fraction
 CGlobalCompositionRepresents the global composition of a system. This tends to be used after finalize and is primarily for internal use
 ▼Nhelmholtz
 CEOSStructure to hold the output parameters and derivatives of the EOS calculation
 CEOSInputStructure to hold the input parameters for the EOS calculation
 CHELMTableStructure to hold the Helmholtz EOS table data
 ▼NnnApprox8
 CApprox8NetworkClass for the Approx8 nuclear reaction network
 CJacobianFunctor to calculate the Jacobian matrix for implicit solvers
 CNetContains constants and arrays related to the nuclear network
 CODEFunctor to calculate the derivatives for the ODE solver
 ▼NnuclearNetwork
 CNetInInput structure for the network evaluation
 CNetOutOutput structure for the network evaluation
 CNetworkClass for network evaluation
 ▼Npolycoeff
 CdThetaInterpCoeff
 Cx1InterpCoeffCoefficients for the interpolations of the surface location of a polytrope
 ▼NpolyMFEMUtilsA namespace for utilities for working with MFEM and solving the lane-emden equation
 CNonlinearPowerIntegratorA class for nonlinear power integrator
 ▼NProbeThe Probe namespace contains utility functions for debugging and logging
 CLogManagerClass to manage logging operations
 Capprox8Test
 CcompositionTestTest suite for the composition class
 CConfigSingleton class to manage configuration settings loaded from a YAML file
 CconfigTestTest suite for the Config class
 CconfigTestPrivateAccessor
 CConstantStructure to hold a constant's details
 CConstantsClass to manage a collection of constants
 CconstTestTest suite for the const class
 CDObjectA universal data container class
 CDObjectTestTest suite for the DObject class
 CEosIOHandles the input/output operations for EOS tables
 CeosTestTest suite for the const class
 CformBundleStructure to hold the various bilinear and nonlinear forms for the polytrope problem
 CGMRESInverterProvides an approximate inverse of the SchurCompliment operator using GMRES
 CLockableDObjectWrapper for DObject with thread-safe access
 CLockableDObjectTestTest suite for the LockableDObject class
 CMeshIOClass for handling mesh input/output operations
 CmeshIOTest
 CMetadataRepresents metadata information for data objects in the dobj module
 CMetadataTestTest suite for the Metadata class
 CPolySolverSolves the Lane-Emden equation for a polytropic star using a mixed finite element method
 CpolyTest
 CPolytropeOperatorRepresents the coupled nonlinear operator for the polytropic system
 CprobeTest
 CResourceManagerManages resources within the application
 CresourceManagerTestTest suite for the resourceManager class
 CSchurComplimentRepresents the Schur complement operator used in the solution process
 CsolverBundleStructure to manage the lifetime of MFEM solver objects
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
 ▼Nserif
 ▼Ncomposition
 CComposition
 CCompositionEntryRepresents an entry in the composition with a symbol and mass fraction
 CGlobalCompositionRepresents the global composition of a system. This tends to be used after finalize and is primarily for internal use
 ▼Nconstant
 CConstantStructure to hold a constant's details
 CConstantsClass to manage a collection of constants
 ▼Neos
 ▼Nhelmholtz
 CEOSStructure to hold the output parameters and derivatives of the EOS calculation
 CEOSInputStructure to hold the input parameters for the EOS calculation
 CHELMTableStructure to hold the Helmholtz EOS table data
 CEosIOHandles the input/output operations for EOS tables
 ▼Nmesh
 CMeshIOClass for handling mesh input/output operations
 ▼Nnetwork
 ▼Napprox8
 CApprox8NetworkClass for the Approx8 nuclear reaction network
 CJacobianFunctor to calculate the Jacobian matrix for implicit solvers
 CNetContains constants and arrays related to the nuclear network
 CODEFunctor to calculate the derivatives for the ODE solver
 CNetInInput structure for the network evaluation
 CNetOutOutput structure for the network evaluation
 CNetworkClass for network evaluation
 ▼Npolytrope
 ▼Npolycoeff
 CdThetaInterpCoeff
 Cx1InterpCoeffCoefficients for the interpolations of the surface location of a polytrope
 ▼NpolyMFEMUtils
 CNonlinearPowerIntegratorA class for nonlinear power integrator
 CformBundleStructure to hold the various bilinear and nonlinear forms for the polytrope problem
 CGMRESInverterProvides an approximate inverse of the SchurCompliment operator using GMRES
 CPolySolverSolves the Lane-Emden equation for a polytropic star using a mixed finite element method
 CPolytropeOperatorRepresents the coupled nonlinear operator for the polytropic system
 CSchurComplimentRepresents the Schur complement operator used in the solution process
 CsolverBundleStructure to manage the lifetime of MFEM solver objects
 ▼NprobeThe Probe namespace contains utility functions for debugging and logging
 CLogManagerClass to manage logging operations
 ▼Nresource
 CResourceManager
 Capprox8Test
 CcompositionTestTest suite for the composition class
 CconfigTestTest suite for the Config class
 CconfigTestPrivateAccessor
 CconstTestTest suite for the const class
 CeosTestTest suite for the const class
 CmeshIOTest
 CpolyTest
 CprobeTest
 CResourceManagerManages resources within the application
 CresourceManagerTestTest suite for the resourceManager class
diff --git a/docs/html/annotated_dup.js b/docs/html/annotated_dup.js index 8f62633..530fa47 100644 --- a/docs/html/annotated_dup.js +++ b/docs/html/annotated_dup.js @@ -1,62 +1,68 @@ var annotated_dup = [ - [ "composition", "namespacecomposition.html", [ - [ "Composition", "classcomposition_1_1_composition.html", "classcomposition_1_1_composition" ], - [ "CompositionEntry", "structcomposition_1_1_composition_entry.html", "structcomposition_1_1_composition_entry" ], - [ "GlobalComposition", "structcomposition_1_1_global_composition.html", "structcomposition_1_1_global_composition" ] - ] ], - [ "helmholtz", "namespacehelmholtz.html", [ - [ "EOS", "structhelmholtz_1_1_e_o_s.html", "structhelmholtz_1_1_e_o_s" ], - [ "EOSInput", "structhelmholtz_1_1_e_o_s_input.html", "structhelmholtz_1_1_e_o_s_input" ], - [ "HELMTable", "structhelmholtz_1_1_h_e_l_m_table.html", "structhelmholtz_1_1_h_e_l_m_table" ] - ] ], - [ "nnApprox8", "namespacenn_approx8.html", [ - [ "Approx8Network", "classnn_approx8_1_1_approx8_network.html", "classnn_approx8_1_1_approx8_network" ], - [ "Jacobian", "structnn_approx8_1_1_jacobian.html", "structnn_approx8_1_1_jacobian" ], - [ "Net", "structnn_approx8_1_1_net.html", "structnn_approx8_1_1_net" ], - [ "ODE", "structnn_approx8_1_1_o_d_e.html", "structnn_approx8_1_1_o_d_e" ] - ] ], - [ "nuclearNetwork", "namespacenuclear_network.html", [ - [ "NetIn", "structnuclear_network_1_1_net_in.html", "structnuclear_network_1_1_net_in" ], - [ "NetOut", "structnuclear_network_1_1_net_out.html", "structnuclear_network_1_1_net_out" ], - [ "Network", "classnuclear_network_1_1_network.html", "classnuclear_network_1_1_network" ] - ] ], - [ "polycoeff", "namespacepolycoeff.html", [ - [ "dThetaInterpCoeff", "structpolycoeff_1_1d_theta_interp_coeff.html", "structpolycoeff_1_1d_theta_interp_coeff" ], - [ "x1InterpCoeff", "structpolycoeff_1_1x1_interp_coeff.html", "structpolycoeff_1_1x1_interp_coeff" ] - ] ], - [ "polyMFEMUtils", "namespacepoly_m_f_e_m_utils.html", [ - [ "NonlinearPowerIntegrator", "classpoly_m_f_e_m_utils_1_1_nonlinear_power_integrator.html", "classpoly_m_f_e_m_utils_1_1_nonlinear_power_integrator" ] - ] ], - [ "Probe", "namespace_probe.html", [ - [ "LogManager", "class_probe_1_1_log_manager.html", "class_probe_1_1_log_manager" ] + [ "serif", "namespaceserif.html", [ + [ "composition", "namespaceserif_1_1composition.html", [ + [ "Composition", "classserif_1_1composition_1_1_composition.html", "classserif_1_1composition_1_1_composition" ], + [ "CompositionEntry", "structserif_1_1composition_1_1_composition_entry.html", "structserif_1_1composition_1_1_composition_entry" ], + [ "GlobalComposition", "structserif_1_1composition_1_1_global_composition.html", "structserif_1_1composition_1_1_global_composition" ] + ] ], + [ "constant", "namespaceserif_1_1constant.html", [ + [ "Constant", "structserif_1_1constant_1_1_constant.html", "structserif_1_1constant_1_1_constant" ], + [ "Constants", "classserif_1_1constant_1_1_constants.html", "classserif_1_1constant_1_1_constants" ] + ] ], + [ "eos", "namespaceserif_1_1eos.html", [ + [ "helmholtz", "namespaceserif_1_1eos_1_1helmholtz.html", [ + [ "EOS", "structserif_1_1eos_1_1helmholtz_1_1_e_o_s.html", "structserif_1_1eos_1_1helmholtz_1_1_e_o_s" ], + [ "EOSInput", "structserif_1_1eos_1_1helmholtz_1_1_e_o_s_input.html", "structserif_1_1eos_1_1helmholtz_1_1_e_o_s_input" ], + [ "HELMTable", "structserif_1_1eos_1_1helmholtz_1_1_h_e_l_m_table.html", "structserif_1_1eos_1_1helmholtz_1_1_h_e_l_m_table" ] + ] ], + [ "EosIO", "classserif_1_1eos_1_1_eos_i_o.html", "classserif_1_1eos_1_1_eos_i_o" ] + ] ], + [ "mesh", "namespaceserif_1_1mesh.html", [ + [ "MeshIO", "classserif_1_1mesh_1_1_mesh_i_o.html", "classserif_1_1mesh_1_1_mesh_i_o" ] + ] ], + [ "network", "namespaceserif_1_1network.html", [ + [ "approx8", "namespaceserif_1_1network_1_1approx8.html", [ + [ "Approx8Network", "classserif_1_1network_1_1approx8_1_1_approx8_network.html", "classserif_1_1network_1_1approx8_1_1_approx8_network" ], + [ "Jacobian", "structserif_1_1network_1_1approx8_1_1_jacobian.html", "structserif_1_1network_1_1approx8_1_1_jacobian" ], + [ "Net", "structserif_1_1network_1_1approx8_1_1_net.html", "structserif_1_1network_1_1approx8_1_1_net" ], + [ "ODE", "structserif_1_1network_1_1approx8_1_1_o_d_e.html", "structserif_1_1network_1_1approx8_1_1_o_d_e" ] + ] ], + [ "NetIn", "structserif_1_1network_1_1_net_in.html", "structserif_1_1network_1_1_net_in" ], + [ "NetOut", "structserif_1_1network_1_1_net_out.html", "structserif_1_1network_1_1_net_out" ], + [ "Network", "classserif_1_1network_1_1_network.html", "classserif_1_1network_1_1_network" ] + ] ], + [ "polytrope", "namespaceserif_1_1polytrope.html", [ + [ "polycoeff", "namespaceserif_1_1polytrope_1_1polycoeff.html", [ + [ "dThetaInterpCoeff", "structserif_1_1polytrope_1_1polycoeff_1_1d_theta_interp_coeff.html", "structserif_1_1polytrope_1_1polycoeff_1_1d_theta_interp_coeff" ], + [ "x1InterpCoeff", "structserif_1_1polytrope_1_1polycoeff_1_1x1_interp_coeff.html", "structserif_1_1polytrope_1_1polycoeff_1_1x1_interp_coeff" ] + ] ], + [ "polyMFEMUtils", "namespaceserif_1_1polytrope_1_1poly_m_f_e_m_utils.html", [ + [ "NonlinearPowerIntegrator", "classserif_1_1polytrope_1_1poly_m_f_e_m_utils_1_1_nonlinear_power_integrator.html", "classserif_1_1polytrope_1_1poly_m_f_e_m_utils_1_1_nonlinear_power_integrator" ] + ] ], + [ "formBundle", "structserif_1_1polytrope_1_1form_bundle.html", "structserif_1_1polytrope_1_1form_bundle" ], + [ "GMRESInverter", "classserif_1_1polytrope_1_1_g_m_r_e_s_inverter.html", "classserif_1_1polytrope_1_1_g_m_r_e_s_inverter" ], + [ "PolySolver", "classserif_1_1polytrope_1_1_poly_solver.html", "classserif_1_1polytrope_1_1_poly_solver" ], + [ "PolytropeOperator", "classserif_1_1polytrope_1_1_polytrope_operator.html", "classserif_1_1polytrope_1_1_polytrope_operator" ], + [ "SchurCompliment", "classserif_1_1polytrope_1_1_schur_compliment.html", "classserif_1_1polytrope_1_1_schur_compliment" ], + [ "solverBundle", "structserif_1_1polytrope_1_1solver_bundle.html", "structserif_1_1polytrope_1_1solver_bundle" ] + ] ], + [ "probe", "namespaceserif_1_1probe.html", [ + [ "LogManager", "classserif_1_1probe_1_1_log_manager.html", "classserif_1_1probe_1_1_log_manager" ] + ] ], + [ "resource", "namespaceserif_1_1resource.html", [ + [ "ResourceManager", "classserif_1_1resource_1_1_resource_manager.html", "classserif_1_1resource_1_1_resource_manager" ] + ] ] ] ], [ "approx8Test", "classapprox8_test.html", null ], [ "compositionTest", "classcomposition_test.html", null ], - [ "Config", "class_config.html", null ], [ "configTest", "classconfig_test.html", null ], [ "configTestPrivateAccessor", "classconfig_test_private_accessor.html", "classconfig_test_private_accessor" ], - [ "Constant", "struct_constant.html", "struct_constant" ], - [ "Constants", "class_constants.html", "class_constants" ], [ "constTest", "classconst_test.html", "classconst_test" ], - [ "DObject", "class_d_object.html", "class_d_object" ], - [ "DObjectTest", "class_d_object_test.html", "class_d_object_test" ], - [ "EosIO", "class_eos_i_o.html", "class_eos_i_o" ], [ "eosTest", "classeos_test.html", null ], - [ "formBundle", "structform_bundle.html", "structform_bundle" ], - [ "GMRESInverter", "class_g_m_r_e_s_inverter.html", "class_g_m_r_e_s_inverter" ], - [ "LockableDObject", "class_lockable_d_object.html", "class_lockable_d_object" ], - [ "LockableDObjectTest", "class_lockable_d_object_test.html", "class_lockable_d_object_test" ], - [ "MeshIO", "class_mesh_i_o.html", "class_mesh_i_o" ], [ "meshIOTest", "classmesh_i_o_test.html", null ], - [ "Metadata", "class_metadata.html", "class_metadata" ], - [ "MetadataTest", "class_metadata_test.html", "class_metadata_test" ], - [ "PolySolver", "class_poly_solver.html", "class_poly_solver" ], [ "polyTest", "classpoly_test.html", null ], - [ "PolytropeOperator", "class_polytrope_operator.html", "class_polytrope_operator" ], [ "probeTest", "classprobe_test.html", null ], - [ "ResourceManager", "class_resource_manager.html", "class_resource_manager" ], - [ "resourceManagerTest", "classresource_manager_test.html", null ], - [ "SchurCompliment", "class_schur_compliment.html", "class_schur_compliment" ], - [ "solverBundle", "structsolver_bundle.html", "structsolver_bundle" ] + [ "ResourceManager", "class_resource_manager.html", null ], + [ "resourceManagerTest", "classresource_manager_test.html", null ] ]; \ No newline at end of file diff --git a/docs/html/classes.html b/docs/html/classes.html index e0a85ee..8fa8180 100644 --- a/docs/html/classes.html +++ b/docs/html/classes.html @@ -106,52 +106,52 @@ $(function(){initNavTree('classes.html',''); initResizable(true); });
A
-
Approx8Network (nnApprox8)
approx8Test
+
Approx8Network (serif::network::approx8)
approx8Test
C
-
Composition (composition)
CompositionEntry (composition)
compositionTest
Config
configTest
configTestPrivateAccessor
Constant
Constants
constTest
+
Composition (serif::composition)
CompositionEntry (serif::composition)
compositionTest
configTest
configTestPrivateAccessor
Constant (serif::constant)
Constants (serif::constant)
constTest
D
-
DObject
DObjectTest
dThetaInterpCoeff (polycoeff)
+
dThetaInterpCoeff (serif::polytrope::polycoeff)
E
-
EOS (helmholtz)
EOSInput (helmholtz)
EosIO
eosTest
+
EOS (serif::eos::helmholtz)
EOSInput (serif::eos::helmholtz)
EosIO (serif::eos)
eosTest
F
-
formBundle
+
formBundle (serif::polytrope)
G
-
GlobalComposition (composition)
GMRESInverter
+
GlobalComposition (serif::composition)
GMRESInverter (serif::polytrope)
H
-
HELMTable (helmholtz)
+
HELMTable (serif::eos::helmholtz)
J
-
Jacobian (nnApprox8)
+
Jacobian (serif::network::approx8)
L
-
LockableDObject
LockableDObjectTest
LogManager (Probe)
+
LogManager (serif::probe)
M
-
MeshIO
meshIOTest
Metadata
MetadataTest
+
MeshIO (serif::mesh)
meshIOTest
N
-
Net (nnApprox8)
NetIn (nuclearNetwork)
NetOut (nuclearNetwork)
Network (nuclearNetwork)
NonlinearPowerIntegrator (polyMFEMUtils)
+
Net (serif::network::approx8)
NetIn (serif::network)
NetOut (serif::network)
Network (serif::network)
NonlinearPowerIntegrator (serif::polytrope::polyMFEMUtils)
O
-
ODE (nnApprox8)
+
ODE (serif::network::approx8)
P
-
PolySolver
polyTest
PolytropeOperator
probeTest
+
PolySolver (serif::polytrope)
polyTest
PolytropeOperator (serif::polytrope)
probeTest
R
-
ResourceManager
resourceManagerTest
+
ResourceManager
ResourceManager (serif::resource)
resourceManagerTest
S
-
SchurCompliment
solverBundle
+
SchurCompliment (serif::polytrope)
solverBundle (serif::polytrope)
X
-
x1InterpCoeff (polycoeff)
+
x1InterpCoeff (serif::polytrope::polycoeff)
diff --git a/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html b/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html index ab04d9a..6fc598c 100644 --- a/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html +++ b/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html @@ -109,9 +109,7 @@ Directories    config   - const -  - dobj + constants    eos   @@ -121,9 +119,7 @@ Directories    network   - opac -  - poly + polytrope    probe   diff --git a/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.js b/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.js index 7214dbb..d2225f8 100644 --- a/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.js +++ b/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.js @@ -2,14 +2,12 @@ var dir_68267d1309a1af8e8297ef4c3efbcdba = [ [ "composition", "dir_425afc2e69e55565110382214454a15b.html", "dir_425afc2e69e55565110382214454a15b" ], [ "config", "dir_7e83d1792d529f4aa7126ac7e0b3b699.html", "dir_7e83d1792d529f4aa7126ac7e0b3b699" ], - [ "const", "dir_409882efad9ab48a895cd8b217d1e026.html", "dir_409882efad9ab48a895cd8b217d1e026" ], - [ "dobj", "dir_768194193337d64eaa7edd2c5f5038a4.html", "dir_768194193337d64eaa7edd2c5f5038a4" ], + [ "constants", "dir_55ef98a57036556dcc9a226e6204f780.html", "dir_55ef98a57036556dcc9a226e6204f780" ], [ "eos", "dir_689df5374f46a72a7f1c8390720533bf.html", "dir_689df5374f46a72a7f1c8390720533bf" ], [ "meshIO", "dir_440126c2838a14af33b22611dbbb2bf6.html", "dir_440126c2838a14af33b22611dbbb2bf6" ], [ "misc", "dir_88826aa2a10e1882b573f502bc7f4b55.html", "dir_88826aa2a10e1882b573f502bc7f4b55" ], [ "network", "dir_fc4c7f03e1a69a98c370fae55a743828.html", "dir_fc4c7f03e1a69a98c370fae55a743828" ], - [ "opac", "dir_98811334950283dfb0b975440d5272eb.html", "dir_98811334950283dfb0b975440d5272eb" ], - [ "poly", "dir_d0d2d394e86fce6a7356095f51b9fa38.html", "dir_d0d2d394e86fce6a7356095f51b9fa38" ], + [ "polytrope", "dir_a73572e2878bf48cd4731aa58ca46c31.html", "dir_a73572e2878bf48cd4731aa58ca46c31" ], [ "probe", "dir_6bad3e3551706232e4c4a487f3402f33.html", "dir_6bad3e3551706232e4c4a487f3402f33" ], [ "resource", "dir_b8641f383bb3a55bd12c64e8208632c3.html", "dir_b8641f383bb3a55bd12c64e8208632c3" ], [ "types", "dir_0c0c9fa8a58db41e576adc3ce68c5ee9.html", "dir_0c0c9fa8a58db41e576adc3ce68c5ee9" ] diff --git a/docs/html/doxygen_crawl.html b/docs/html/doxygen_crawl.html index e0ff558..529c83c 100644 --- a/docs/html/doxygen_crawl.html +++ b/docs/html/doxygen_crawl.html @@ -12,49 +12,8 @@ - + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - @@ -69,346 +28,285 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -432,7 +330,6 @@ - @@ -463,70 +360,62 @@ + - - + + - - - + - - + + - - + - - + - - - + - - - + - + - - + + - @@ -557,11 +446,9 @@ - - @@ -572,7 +459,6 @@ - @@ -593,15 +479,8 @@ - - - - - - - @@ -636,86 +515,107 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -724,9 +624,6 @@ - - - @@ -771,200 +668,191 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - - - diff --git a/docs/html/files.html b/docs/html/files.html index 2bb6c39..0eb0c70 100644 --- a/docs/html/files.html +++ b/docs/html/files.html @@ -108,117 +108,99 @@ $(function(){initNavTree('files.html',''); initResizable(true); });  static  ▼ src  ▼ composition - ► private - composition.cpp - ► public - composition.h + ▼ private + composition.cpp + ▼ public + composition.h  ▼ config - ► private - config.cpp - ► public - config.h - ▼ const - ► private - const.cpp - ► public - const.h - ▼ dobj - ► private - DObject.cppImplementation of the DObject class - LockableDObject.cpp - Metadata.cppImplementation of the Metadata class used in the dobj module - ► public - DObject.hDefines the DObject class, a universal data container for the project - LockableDObject.hA lightweight wrapper for DObject that adds locking capabilities - Metadata.hPublic interface for the Metadata class used in the dobj module - ▼ eos - ► private - eosIO.cpp - helm.cpp - ► public - eosIO.h - helm.h - ▼ meshIO - ► private - meshIO.cpp - ► public - meshIO.h - ▼ misc - ► macros - debug.hDefines a macro for triggering a breakpoint in different compilers and platforms - warning_control.h - ▼ network - ► private - approx8.cpp - network.cpp - ► public - approx8.hHeader file for the Approx8 nuclear reaction network - network.h - ▼ opac - ► public - opac.h - ▼ poly - ► coeff - ► private - polyCoeff.cpp - ► public - polyCoeff.h - ► solver - ► private - polySolver.cpp - ► public - polySolver.h - ► utils - ► private - integrators.cpp - polytropeOperator.cpp - utilities.cpp - ► public - integrators.hA collection of utilities for working with MFEM and solving the lane-emden equation - polytropeOperator.h - utilities.h - ▼ probe - ► private - probe.cpp - ► public - probe.h - ▼ resource - ► private - resourceManager.cpp - resourceManagerTypes.cpp - ► public - resourceManager.h - resourceManagerTypes.hDefines types and functions for managing resources - ▼ types - ► public - 4DSTARTypes.h + ▼ private + config.cpp + ▼ public + config.h + ▼ constants + ▼ private + const.cpp + ▼ public + const.h + ▼ eos + ▼ private + eosIO.cpp + helm.cpp + ▼ public + eosIO.h + helm.h + ▼ meshIO + ▼ private + meshIO.cpp + ▼ public + meshIO.h + ▼ misc + ▼ macros + debug.hDefines a macro for triggering a breakpoint in different compilers and platforms + warning_control.h + ▼ network + ▼ private + approx8.cpp + network.cpp + ▼ public + approx8.hHeader file for the Approx8 nuclear reaction network + network.h + ▼ polytrope + ▼ coeff + ▼ private + polyCoeff.cpp + ▼ public + polyCoeff.h + ▼ solver + ▼ private + polySolver.cpp + ▼ public + polySolver.h + ▼ utils + ▼ private + integrators.cpp + polytropeOperator.cpp + utilities.cpp + ▼ public + integrators.hA collection of utilities for working with MFEM and solving the lane-emden equation + polytropeOperator.h + utilities.h + ▼ probe + ▼ private + probe.cpp + ▼ public + probe.h + ▼ resource + ▼ private + resourceManager.cpp + resourceManagerTypes.cpp + ▼ public + resourceManager.h + resourceManagerTypes.hDefines types and functions for managing resources + ▼ types + ▼ public + 4DSTARTypes.h  ▼ tests  ▼ composition  compositionTest.cpp  ▼ composition_sandbox  comp.cpp  ▼ config - configTest.cppUnit tests for the Config class + configTest.cppUnit tests for the Config class  ▼ const  constTest.cppUnit tests for the const class - ▼ dobj - DObjectTest.cppUnit tests for the DObject class - LockableDObjectTest.cppUnit tests for the LockableDObject class - MetadataTest.cppUnit tests and integration tests for the Metadata class - ▼ dobj_sandbox - testDObject.cpp - ▼ eos - eosTest.cpp - ▼ meshIO - meshIOTest.cpp - ▼ network - approx8Test.cpp - ▼ poly - polyTest.cpp - ▼ probe - probeTest.cpp - ▼ resource - resourceManagerTest.cpp + ▼ eos + eosTest.cpp + ▼ meshIO + meshIOTest.cpp + ▼ network + approx8Test.cpp + ▼ poly + polyTest.cpp + ▼ probe + probeTest.cpp + ▼ resource + resourceManagerTest.cpp diff --git a/docs/html/functions.html b/docs/html/functions.html index 51eb71c..7461667 100644 --- a/docs/html/functions.html +++ b/docs/html/functions.html @@ -102,12 +102,12 @@ $(function(){initNavTree('functions.html',''); initResizable(true); });
Here is a list of all class members with links to the classes they belong to:

- a -

diff --git a/docs/html/functions_func.html b/docs/html/functions_func.html index 11a04e0..3811e4a 100644 --- a/docs/html/functions_func.html +++ b/docs/html/functions_func.html @@ -102,242 +102,213 @@ $(function(){initNavTree('functions_func.html',''); initResizable(true); });
Here is a list of all functions with links to the classes they belong to:

- a -

- b -

- c -

- - -

- d -

- e -

- f -

- g -

- h -

- i -

- k -

- l -

- m -

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- o -

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- u -

- v -

- ~ -

diff --git a/docs/html/functions_rela.html b/docs/html/functions_rela.html index 318c055..b47444d 100644 --- a/docs/html/functions_rela.html +++ b/docs/html/functions_rela.html @@ -100,7 +100,7 @@ $(function(){initNavTree('functions_rela.html',''); initResizable(true); });
Here is a list of all related symbols with links to the classes they belong to:
diff --git a/docs/html/globals.html b/docs/html/globals.html index 7315e13..9eaadd6 100644 --- a/docs/html/globals.html +++ b/docs/html/globals.html @@ -101,11 +101,6 @@ $(function(){initNavTree('globals.html',''); initResizable(true); });
Here is a list of all file members with links to the files they belong to:
-

- a -

- -

- b -

@@ -114,7 +109,6 @@ $(function(){initNavTree('globals.html',''); initResizable(true); });

- c -

@@ -125,52 +119,21 @@ $(function(){initNavTree('globals.html',''); initResizable(true); });

- e -

- g -

-

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diff --git a/docs/html/index.html b/docs/html/index.html index 22403cf..276d6fe 100644 --- a/docs/html/index.html +++ b/docs/html/index.html @@ -136,19 +136,19 @@ High-Level Usage Examples

Below are some high-level examples of how to use key components of 4DSSE.

Solving for a Polytrope

-

The PolySolver class handles the setup and solution of the Lane-Emden equation for polytropic stellar models.

+

The PolySolver class handles the setup and solution of the Lane-Emden equation for polytropic stellar models.

#include "polySolver.h"
#include "config.h" // For global configuration
#include "probe.h" // For logging
-
int main() {
+
int main() {
// Initialize configuration and logging
Config::getInstance().loadConfig("path/to/your/config.yaml");
-
Probe::LogManager::getInstance().getLogger("main_log"); // Initialize a logger
+
Probe::LogManager::getInstance().getLogger("main_log"); // Initialize a logger
try {
// Create a PolySolver for polytropic index n=1.5 and FE order 2
-
PolySolver solver(1.5, 2);
+
PolySolver solver(1.5, 2);
solver.solve(); // Solve the system
// Access the solution
@@ -161,13 +161,10 @@ Solving for a Polytrope
}
return 0;
}
-
PolySolver
Solves the Lane-Emden equation for a polytropic star using a mixed finite element method.
Definition polySolver.h:200
-
Probe::LogManager::getLogger
quill::Logger * getLogger(const std::string &loggerName)
Get a logger by name.
Definition probe.cpp:219
-
Probe::LogManager::getInstance
static LogManager & getInstance()
Get the singleton instance of LogManager.
Definition probe.h:103
+
main
int main(int argv, char *argc[])
Definition comp.cpp:5
config.h
polySolver.h
probe.h
-
main
int main()
Definition testDObject.cpp:7

Managing Chemical Compositions

The Composition class allows for defining and managing chemical compositions.

@@ -175,14 +172,14 @@ Managing Chemical Compositions
#include <iostream>
#include <vector>
-
int main() {
+
int main() {
try {
// Define symbols and their mass fractions
std::vector<std::string> symbols = {"H-1", "He-4"}; // Use specific isotopes
std::vector<double> mass_fractions = {0.75, 0.25};
// Create and finalize the composition
-
composition::Composition comp(symbols, mass_fractions);
+
composition::Composition comp(symbols, mass_fractions);
// Get mass fraction of a specific element
std::cout << "Mass fraction of H-1: " << comp.getMassFraction("H-1") << std::endl;
@@ -196,7 +193,6 @@ Managing Chemical Compositions
}
return 0;
}
-
composition::Composition
Definition composition.h:211
composition.h

Nuclear Reaction Networks

@@ -206,78 +202,57 @@ Nuclear Reaction Networks
#include <iostream>
#include <vector>
-
int main() {
-
nnApprox8::Approx8Network approx8_net; // Using the Approx8 network
-
approx8_net.setStiff(true); // Example: use stiff solver
+
int main() {
+
nnApprox8::Approx8Network approx8_net; // Using the Approx8 network
+
approx8_net.setStiff(true); // Example: use stiff solver
-
nuclearNetwork::NetIn input;
-
input.composition = {0.7, 0.0, 0.28, 0.01, 0.005, 0.004, 0.0005, 0.0005}; // H1, He3, He4, C12, N14, O16, Ne20, Mg24
-
input.temperature = 1.5e7; // K
-
input.density = 150.0; // g/cm^3
-
input.tmax = 1.0e10; // s
-
input.dt0 = 1.0e6; // s
+
nuclearNetwork::NetIn input;
+
input.composition = {0.7, 0.0, 0.28, 0.01, 0.005, 0.004, 0.0005, 0.0005}; // H1, He3, He4, C12, N14, O16, Ne20, Mg24
+
input.temperature = 1.5e7; // K
+
input.density = 150.0; // g/cm^3
+
input.tmax = 1.0e10; // s
+
input.dt0 = 1.0e6; // s
// input.energy can also be set if needed
try {
-
nuclearNetwork::NetOut output = approx8_net.evaluate(input);
-
std::cout << "Number of steps: " << output.num_steps << std::endl;
-
std::cout << "Final H-1 mass fraction (approx): " << output.composition[nnApprox8::Net::ih1] << std::endl;
+
nuclearNetwork::NetOut output = approx8_net.evaluate(input);
+
std::cout << "Number of steps: " << output.num_steps << std::endl;
+
std::cout << "Final H-1 mass fraction (approx): " << output.composition[nnApprox8::Net::ih1] << std::endl;
} catch (const std::exception& e) {
std::cerr << "Network evaluation error: " << e.what() << std::endl;
}
return 0;
}
approx8.h
Header file for the Approx8 nuclear reaction network.
-
nnApprox8::Approx8Network
Class for the Approx8 nuclear reaction network.
Definition approx8.h:297
-
nnApprox8::Approx8Network::setStiff
void setStiff(bool stiff)
Sets whether the solver should use a stiff method.
Definition approx8.cpp:505
-
nnApprox8::Approx8Network::evaluate
virtual nuclearNetwork::NetOut evaluate(const nuclearNetwork::NetIn &netIn)
Evaluates the nuclear network.
Definition approx8.cpp:447
network.h
-
nnApprox8::Net::ih1
static const int ih1
Definition approx8.h:65
-
nuclearNetwork::NetIn
Input structure for the network evaluation.
Definition network.h:48
-
nuclearNetwork::NetIn::composition
std::vector< double > composition
Composition of the network.
Definition network.h:49
-
nuclearNetwork::NetIn::density
double density
Density in g/cm^3.
Definition network.h:53
-
nuclearNetwork::NetIn::temperature
double temperature
Temperature in Kelvin.
Definition network.h:52
-
nuclearNetwork::NetIn::dt0
double dt0
Initial time step.
Definition network.h:51
-
nuclearNetwork::NetIn::tmax
double tmax
Maximum time.
Definition network.h:50
-
nuclearNetwork::NetOut
Output structure for the network evaluation.
Definition network.h:71
-
nuclearNetwork::NetOut::composition
std::vector< double > composition
Composition of the network after evaluation.
Definition network.h:72
-
nuclearNetwork::NetOut::num_steps
int num_steps
Number of steps taken in the evaluation.
Definition network.h:73

Accessing Physical Constants

-

The Constants singleton provides access to a database of physical constants.

+

The Constants singleton provides access to a database of physical constants.

#include "const.h"
#include <iostream>
-
int main() {
-
Constants& consts = Constants::getInstance();
-
if (consts.isLoaded()) {
-
Constant G = consts.get("Gravitational constant");
-
std::cout << G.name << ": " << G.value << " " << G.unit << std::endl;
+
int main() {
+
Constants& consts = Constants::getInstance();
+
if (consts.isLoaded()) {
+
Constant G = consts.get("Gravitational constant");
+
std::cout << G.name << ": " << G.value << " " << G.unit << std::endl;
-
Constant c = consts["Speed of light in vacuum"]; // Can also use operator[]
+
Constant c = consts["Speed of light in vacuum"]; // Can also use operator[]
std::cout << c.name << ": " << c.value << " " << c.unit << std::endl;
} else {
std::cerr << "Failed to load constants." << std::endl;
}
return 0;
}
-
Constants
Class to manage a collection of constants.
Definition const.h:66
-
Constants::get
Constant get(const std::string &key) const
Get a constant by key.
Definition const.cpp:41
-
Constants::getInstance
static Constants & getInstance()
get instance of constants singelton
Definition const.h:102
-
Constants::isLoaded
bool isLoaded()
Check if constants are loaded.
Definition const.h:111
const.h
-
Constant
Structure to hold a constant's details.
Definition const.h:34
-
Constant::unit
const std::string unit
Unit of the constant.
Definition const.h:38
-
Constant::value
const double value
Value of the constant.
Definition const.h:36
-
Constant::name
const std::string name
Name of the constant.
Definition const.h:35

Configuration Management

-

The Config singleton manages settings from a YAML configuration file.

+

The Config singleton manages settings from a YAML configuration file.

#include "config.h"
#include <iostream>
-
int main() {
-
Config& config = Config::getInstance();
+
int main() {
+
Config& config = Config::getInstance();
if (config.loadConfig("path/to/your/config.yaml")) {
// Get a string value, with a default if not found
std::string outputPath = config.get<std::string>("Output:Path", "./output/");
@@ -291,19 +266,18 @@ Configuration Management
}
return 0;
}
-
Config
Singleton class to manage configuration settings loaded from a YAML file.

Logging

-

The Probe::LogManager provides a way to manage and use loggers.

+

The Probe::LogManager provides a way to manage and use loggers.

#include "probe.h"
#include "config.h" // Often used to configure logging
-
int main() {
+
int main() {
// Assuming config is loaded and might define log file, level etc.
// Config::getInstance().loadConfig("config.yaml");
-
Probe::LogManager& logManager = Probe::LogManager::getInstance();
-
quill::Logger* mainLogger = logManager.getLogger("main_app_log"); // Get or create logger
+
Probe::LogManager& logManager = Probe::LogManager::getInstance();
+
quill::Logger* mainLogger = logManager.getLogger("main_app_log"); // Get or create logger
// Example: Create a new file logger if not configured through a central mechanism
// quill::Logger* fileLogger = logManager.newFileLogger("app_trace.log", "trace_log");
@@ -314,19 +288,18 @@ Logging
return 0;
}
-
Probe::LogManager
Class to manage logging operations.
Definition probe.h:79

Equation of State (EOS)

-

The EosIO class loads EOS tables, and the helmholtz namespace provides functions to use them, for example, the Helmholtz EOS.

+

The EosIO class loads EOS tables, and the helmholtz namespace provides functions to use them, for example, the Helmholtz EOS.

#include "eosIO.h"
#include "helm.h"
#include <iostream>
-
int main() {
+
int main() {
try {
// Load the Helmholtz EOS table
-
EosIO helm_eos_io("path/to/helm_table.dat"); // Replace with actual path
-
EOSTable& table_variant = helm_eos_io.getTable();
+
EosIO helm_eos_io("path/to/helm_table.dat"); // Replace with actual path
+
EOSTable& table_variant = helm_eos_io.getTable();
// Assuming it's a HELMTable, get it (add error checking in real code)
auto* helm_table_ptr = std::get_if<std::unique_ptr<helmholtz::HELMTable>>(&table_variant);
@@ -334,20 +307,20 @@ Equation of State (EOS)
std::cerr << "Failed to load or access HELM table." << std::endl;
return 1;
}
-
const helmholtz::HELMTable& table = **helm_table_ptr;
+
const helmholtz::HELMTable& table = **helm_table_ptr;
// Define input conditions
-
helmholtz::EOSInput input;
-
input.T = 1.0e7; // Temperature in K
-
input.rho = 100.0; // Density in g/cm^3
-
input.abar = 1.0; // Mean atomic mass (e.g., for pure hydrogen)
-
input.zbar = 1.0; // Mean atomic number (e.g., for pure hydrogen)
+
helmholtz::EOSInput input;
+
input.T = 1.0e7; // Temperature in K
+
input.rho = 100.0; // Density in g/cm^3
+
input.abar = 1.0; // Mean atomic mass (e.g., for pure hydrogen)
+
input.zbar = 1.0; // Mean atomic number (e.g., for pure hydrogen)
// Get EOS results
-
helmholtz::EOS results = helmholtz::get_helm_EOS(input, table);
+
helmholtz::EOS results = helmholtz::get_helm_EOS(input, table);
-
std::cout << "Total Pressure (Ptot): " << results.ptot << " dyne/cm^2" << std::endl;
-
std::cout << "Total Energy (Etot): " << results.etot << " erg/g" << std::endl;
+
std::cout << "Total Pressure (Ptot): " << results.ptot << " dyne/cm^2" << std::endl;
+
std::cout << "Total Energy (Etot): " << results.etot << " erg/g" << std::endl;
} catch (const std::exception& e) {
std::cerr << "EOS error: " << e.what() << std::endl;
@@ -355,31 +328,19 @@ Equation of State (EOS)
}
return 0;
}
-
EosIO
Handles the input/output operations for EOS tables.
Definition eosIO.h:49
eosIO.h
-
EOSTable
std::variant< std::unique_ptr< helmholtz::HELMTable > > EOSTable
Definition eosIO.h:31
helm.h
-
helmholtz::get_helm_EOS
EOS get_helm_EOS(EOSInput &q, const HELMTable &table)
Calculate the Helmholtz EOS components.
Definition helm.cpp:236
-
helmholtz::EOS
Structure to hold the output parameters and derivatives of the EOS calculation.
Definition helm.h:312
-
helmholtz::EOS::etot
double etot
Definition helm.h:316
-
helmholtz::EOS::ptot
double ptot
Definition helm.h:315
-
helmholtz::EOSInput
Structure to hold the input parameters for the EOS calculation.
Definition helm.h:290
-
helmholtz::EOSInput::zbar
double zbar
Mean atomic number.
Definition helm.h:294
-
helmholtz::EOSInput::T
double T
Temperature.
Definition helm.h:291
-
helmholtz::EOSInput::rho
double rho
Density.
Definition helm.h:292
-
helmholtz::EOSInput::abar
double abar
Mean atomic mass.
Definition helm.h:293
-
helmholtz::HELMTable
Structure to hold the Helmholtz EOS table data.
Definition helm.h:65

Mesh Handling

-

The MeshIO class facilitates loading and managing computational meshes.

+

The MeshIO class facilitates loading and managing computational meshes.

#include "meshIO.h"
#include "mfem.hpp" // For mfem::Mesh
#include <iostream>
-
int main() {
+
int main() {
try {
// Initialize MeshIO with a mesh file and a scale factor
-
MeshIO mesh_handler("path/to/your/mesh.msh", 1.0); // Replace with actual path
+
MeshIO mesh_handler("path/to/your/mesh.msh", 1.0); // Replace with actual path
if (mesh_handler.IsLoaded()) {
mfem::Mesh& mesh = mesh_handler.GetMesh();
@@ -399,22 +360,21 @@ Mesh Handling
}
return 0;
}
-
MeshIO
Class for handling mesh input/output operations.
Definition meshIO.h:30
meshIO.h

Key Modules and Components

4DSSE is organized into several key modules:

Future Development

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+\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1network_1_1approx8_1_1_approx8_network}{serif\+::network\+::approx8\+::\+Approx8\+Network}} \\*Class for the Approx8 nuclear reaction network }{\pageref{classserif_1_1network_1_1approx8_1_1_approx8_network}}{} \item\contentsline{section}{\mbox{\hyperlink{classapprox8_test}{approx8\+Test}} }{\pageref{classapprox8_test}}{} -\item\contentsline{section}{\mbox{\hyperlink{classcomposition_1_1_composition}{composition\+::\+Composition}} }{\pageref{classcomposition_1_1_composition}}{} -\item\contentsline{section}{\mbox{\hyperlink{structcomposition_1_1_composition_entry}{composition\+::\+Composition\+Entry}} \\*Represents an entry in the composition with a symbol and mass fraction }{\pageref{structcomposition_1_1_composition_entry}}{} +\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1composition_1_1_composition}{serif\+::composition\+::\+Composition}} }{\pageref{classserif_1_1composition_1_1_composition}}{} +\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1composition_1_1_composition_entry}{serif\+::composition\+::\+Composition\+Entry}} \\*Represents an entry in the composition with a symbol and mass fraction }{\pageref{structserif_1_1composition_1_1_composition_entry}}{} \item\contentsline{section}{\mbox{\hyperlink{classcomposition_test}{composition\+Test}} \\*Test suite for the composition class }{\pageref{classcomposition_test}}{} -\item\contentsline{section}{\mbox{\hyperlink{class_config}{Config}} \\*Singleton class to manage configuration settings loaded from a YAML file }{\pageref{class_config}}{} -\item\contentsline{section}{\mbox{\hyperlink{classconfig_test}{config\+Test}} \\*Test suite for the \doxylink{class_config}{Config} class }{\pageref{classconfig_test}}{} +\item\contentsline{section}{\mbox{\hyperlink{classconfig_test}{config\+Test}} \\*Test suite for the Config class }{\pageref{classconfig_test}}{} \item\contentsline{section}{\mbox{\hyperlink{classconfig_test_private_accessor}{config\+Test\+Private\+Accessor}} }{\pageref{classconfig_test_private_accessor}}{} -\item\contentsline{section}{\mbox{\hyperlink{struct_constant}{Constant}} \\*Structure to hold a constant\textquotesingle{}s details }{\pageref{struct_constant}}{} -\item\contentsline{section}{\mbox{\hyperlink{class_constants}{Constants}} \\*Class to manage a collection of constants }{\pageref{class_constants}}{} +\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1constant_1_1_constant}{serif\+::constant\+::\+Constant}} \\*Structure to hold a constant\textquotesingle{}s details }{\pageref{structserif_1_1constant_1_1_constant}}{} +\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1constant_1_1_constants}{serif\+::constant\+::\+Constants}} \\*Class to manage a collection of constants }{\pageref{classserif_1_1constant_1_1_constants}}{} \item\contentsline{section}{\mbox{\hyperlink{classconst_test}{const\+Test}} \\*Test suite for the const class }{\pageref{classconst_test}}{} -\item\contentsline{section}{\mbox{\hyperlink{class_d_object}{DObject}} \\*A universal data container class }{\pageref{class_d_object}}{} -\item\contentsline{section}{\mbox{\hyperlink{class_d_object_test}{DObject\+Test}} \\*Test suite for the \doxylink{class_d_object}{DObject} class }{\pageref{class_d_object_test}}{} -\item\contentsline{section}{\mbox{\hyperlink{structpolycoeff_1_1d_theta_interp_coeff}{polycoeff\+::d\+Theta\+Interp\+Coeff}} }{\pageref{structpolycoeff_1_1d_theta_interp_coeff}}{} -\item\contentsline{section}{\mbox{\hyperlink{structhelmholtz_1_1_e_o_s}{helmholtz\+::\+EOS}} \\*Structure to hold the output parameters and derivatives of the \doxylink{structhelmholtz_1_1_e_o_s}{EOS} calculation }{\pageref{structhelmholtz_1_1_e_o_s}}{} -\item\contentsline{section}{\mbox{\hyperlink{structhelmholtz_1_1_e_o_s_input}{helmholtz\+::\+EOSInput}} \\*Structure to hold the input parameters for the \doxylink{structhelmholtz_1_1_e_o_s}{EOS} calculation }{\pageref{structhelmholtz_1_1_e_o_s_input}}{} -\item\contentsline{section}{\mbox{\hyperlink{class_eos_i_o}{Eos\+IO}} \\*Handles the input/output operations for EOS tables }{\pageref{class_eos_i_o}}{} +\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1polytrope_1_1polycoeff_1_1d_theta_interp_coeff}{serif\+::polytrope\+::polycoeff\+::d\+Theta\+Interp\+Coeff}} }{\pageref{structserif_1_1polytrope_1_1polycoeff_1_1d_theta_interp_coeff}}{} +\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1eos_1_1helmholtz_1_1_e_o_s}{serif\+::eos\+::helmholtz\+::\+EOS}} \\*Structure to hold the output parameters and derivatives of the \doxylink{structserif_1_1eos_1_1helmholtz_1_1_e_o_s}{EOS} calculation }{\pageref{structserif_1_1eos_1_1helmholtz_1_1_e_o_s}}{} +\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1eos_1_1helmholtz_1_1_e_o_s_input}{serif\+::eos\+::helmholtz\+::\+EOSInput}} \\*Structure to hold the input parameters for the \doxylink{structserif_1_1eos_1_1helmholtz_1_1_e_o_s}{EOS} calculation }{\pageref{structserif_1_1eos_1_1helmholtz_1_1_e_o_s_input}}{} +\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1eos_1_1_eos_i_o}{serif\+::eos\+::\+Eos\+IO}} \\*Handles the input/output operations for EOS tables }{\pageref{classserif_1_1eos_1_1_eos_i_o}}{} \item\contentsline{section}{\mbox{\hyperlink{classeos_test}{eos\+Test}} \\*Test suite for the const class }{\pageref{classeos_test}}{} -\item\contentsline{section}{\mbox{\hyperlink{structform_bundle}{form\+Bundle}} \\*Structure to hold the various bilinear and nonlinear forms for the polytrope problem }{\pageref{structform_bundle}}{} -\item\contentsline{section}{\mbox{\hyperlink{structcomposition_1_1_global_composition}{composition\+::\+Global\+Composition}} \\*Represents the global composition of a system. This tends to be used after finalize and is primarily for internal use }{\pageref{structcomposition_1_1_global_composition}}{} -\item\contentsline{section}{\mbox{\hyperlink{class_g_m_r_e_s_inverter}{GMRESInverter}} \\*Provides an approximate inverse of the \doxylink{class_schur_compliment}{Schur\+Compliment} operator using GMRES }{\pageref{class_g_m_r_e_s_inverter}}{} -\item\contentsline{section}{\mbox{\hyperlink{structhelmholtz_1_1_h_e_l_m_table}{helmholtz\+::\+HELMTable}} \\*Structure to hold the Helmholtz \doxylink{structhelmholtz_1_1_e_o_s}{EOS} table data }{\pageref{structhelmholtz_1_1_h_e_l_m_table}}{} -\item\contentsline{section}{\mbox{\hyperlink{structnn_approx8_1_1_jacobian}{nn\+Approx8\+::\+Jacobian}} \\*Functor to calculate the \doxylink{structnn_approx8_1_1_jacobian}{Jacobian} matrix for implicit solvers }{\pageref{structnn_approx8_1_1_jacobian}}{} -\item\contentsline{section}{\mbox{\hyperlink{class_lockable_d_object}{Lockable\+DObject}} \\*Wrapper for \doxylink{class_d_object}{DObject} with thread-\/safe access }{\pageref{class_lockable_d_object}}{} -\item\contentsline{section}{\mbox{\hyperlink{class_lockable_d_object_test}{Lockable\+DObject\+Test}} \\*Test suite for the \doxylink{class_lockable_d_object}{Lockable\+DObject} class }{\pageref{class_lockable_d_object_test}}{} -\item\contentsline{section}{\mbox{\hyperlink{class_probe_1_1_log_manager}{Probe\+::\+Log\+Manager}} \\*Class to manage logging operations }{\pageref{class_probe_1_1_log_manager}}{} -\item\contentsline{section}{\mbox{\hyperlink{class_mesh_i_o}{Mesh\+IO}} \\*Class for handling mesh input/output operations }{\pageref{class_mesh_i_o}}{} +\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1polytrope_1_1form_bundle}{serif\+::polytrope\+::form\+Bundle}} \\*Structure to hold the various bilinear and nonlinear forms for the polytrope problem }{\pageref{structserif_1_1polytrope_1_1form_bundle}}{} +\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1composition_1_1_global_composition}{serif\+::composition\+::\+Global\+Composition}} \\*Represents the global composition of a system. This tends to be used after finalize and is primarily for internal use }{\pageref{structserif_1_1composition_1_1_global_composition}}{} +\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1polytrope_1_1_g_m_r_e_s_inverter}{serif\+::polytrope\+::\+GMRESInverter}} \\*Provides an approximate inverse of the \doxylink{classserif_1_1polytrope_1_1_schur_compliment}{Schur\+Compliment} operator using GMRES }{\pageref{classserif_1_1polytrope_1_1_g_m_r_e_s_inverter}}{} +\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1eos_1_1helmholtz_1_1_h_e_l_m_table}{serif\+::eos\+::helmholtz\+::\+HELMTable}} \\*Structure to hold the Helmholtz \doxylink{structserif_1_1eos_1_1helmholtz_1_1_e_o_s}{EOS} table data }{\pageref{structserif_1_1eos_1_1helmholtz_1_1_h_e_l_m_table}}{} +\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1network_1_1approx8_1_1_jacobian}{serif\+::network\+::approx8\+::\+Jacobian}} \\*Functor to calculate the \doxylink{structserif_1_1network_1_1approx8_1_1_jacobian}{Jacobian} matrix for implicit solvers }{\pageref{structserif_1_1network_1_1approx8_1_1_jacobian}}{} +\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1probe_1_1_log_manager}{serif\+::probe\+::\+Log\+Manager}} \\*Class to manage logging operations }{\pageref{classserif_1_1probe_1_1_log_manager}}{} +\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1mesh_1_1_mesh_i_o}{serif\+::mesh\+::\+Mesh\+IO}} \\*Class for handling mesh input/output operations }{\pageref{classserif_1_1mesh_1_1_mesh_i_o}}{} \item\contentsline{section}{\mbox{\hyperlink{classmesh_i_o_test}{mesh\+IOTest}} }{\pageref{classmesh_i_o_test}}{} -\item\contentsline{section}{\mbox{\hyperlink{class_metadata}{Metadata}} \\*Represents metadata information for data objects in the dobj module }{\pageref{class_metadata}}{} -\item\contentsline{section}{\mbox{\hyperlink{class_metadata_test}{Metadata\+Test}} \\*Test suite for the \doxylink{class_metadata}{Metadata} class }{\pageref{class_metadata_test}}{} -\item\contentsline{section}{\mbox{\hyperlink{structnn_approx8_1_1_net}{nn\+Approx8\+::\+Net}} \\*Contains constants and arrays related to the nuclear network }{\pageref{structnn_approx8_1_1_net}}{} -\item\contentsline{section}{\mbox{\hyperlink{structnuclear_network_1_1_net_in}{nuclear\+Network\+::\+Net\+In}} \\*Input structure for the network evaluation }{\pageref{structnuclear_network_1_1_net_in}}{} -\item\contentsline{section}{\mbox{\hyperlink{structnuclear_network_1_1_net_out}{nuclear\+Network\+::\+Net\+Out}} \\*Output structure for the network evaluation }{\pageref{structnuclear_network_1_1_net_out}}{} -\item\contentsline{section}{\mbox{\hyperlink{classnuclear_network_1_1_network}{nuclear\+Network\+::\+Network}} \\*Class for network evaluation }{\pageref{classnuclear_network_1_1_network}}{} -\item\contentsline{section}{\mbox{\hyperlink{classpoly_m_f_e_m_utils_1_1_nonlinear_power_integrator}{poly\+MFEMUtils\+::\+Nonlinear\+Power\+Integrator}} \\*A class for nonlinear power integrator }{\pageref{classpoly_m_f_e_m_utils_1_1_nonlinear_power_integrator}}{} -\item\contentsline{section}{\mbox{\hyperlink{structnn_approx8_1_1_o_d_e}{nn\+Approx8\+::\+ODE}} \\*Functor to calculate the derivatives for the \doxylink{structnn_approx8_1_1_o_d_e}{ODE} solver }{\pageref{structnn_approx8_1_1_o_d_e}}{} -\item\contentsline{section}{\mbox{\hyperlink{class_poly_solver}{Poly\+Solver}} \\*Solves the Lane-\/\+Emden equation for a polytropic star using a mixed finite element method }{\pageref{class_poly_solver}}{} +\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1network_1_1approx8_1_1_net}{serif\+::network\+::approx8\+::\+Net}} \\*Contains constants and arrays related to the nuclear network }{\pageref{structserif_1_1network_1_1approx8_1_1_net}}{} +\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1network_1_1_net_in}{serif\+::network\+::\+Net\+In}} \\*Input structure for the network evaluation }{\pageref{structserif_1_1network_1_1_net_in}}{} +\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1network_1_1_net_out}{serif\+::network\+::\+Net\+Out}} \\*Output structure for the network evaluation }{\pageref{structserif_1_1network_1_1_net_out}}{} +\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1network_1_1_network}{serif\+::network\+::\+Network}} \\*Class for network evaluation }{\pageref{classserif_1_1network_1_1_network}}{} +\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1polytrope_1_1poly_m_f_e_m_utils_1_1_nonlinear_power_integrator}{serif\+::polytrope\+::poly\+MFEMUtils\+::\+Nonlinear\+Power\+Integrator}} \\*A class for nonlinear power integrator }{\pageref{classserif_1_1polytrope_1_1poly_m_f_e_m_utils_1_1_nonlinear_power_integrator}}{} +\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1network_1_1approx8_1_1_o_d_e}{serif\+::network\+::approx8\+::\+ODE}} \\*Functor to calculate the derivatives for the \doxylink{structserif_1_1network_1_1approx8_1_1_o_d_e}{ODE} solver }{\pageref{structserif_1_1network_1_1approx8_1_1_o_d_e}}{} +\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1polytrope_1_1_poly_solver}{serif\+::polytrope\+::\+Poly\+Solver}} \\*Solves the Lane-\/\+Emden equation for a polytropic star using a mixed finite element method }{\pageref{classserif_1_1polytrope_1_1_poly_solver}}{} \item\contentsline{section}{\mbox{\hyperlink{classpoly_test}{poly\+Test}} }{\pageref{classpoly_test}}{} -\item\contentsline{section}{\mbox{\hyperlink{class_polytrope_operator}{Polytrope\+Operator}} \\*Represents the coupled nonlinear operator for the polytropic system }{\pageref{class_polytrope_operator}}{} +\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1polytrope_1_1_polytrope_operator}{serif\+::polytrope\+::\+Polytrope\+Operator}} \\*Represents the coupled nonlinear operator for the polytropic system }{\pageref{classserif_1_1polytrope_1_1_polytrope_operator}}{} \item\contentsline{section}{\mbox{\hyperlink{classprobe_test}{probe\+Test}} }{\pageref{classprobe_test}}{} \item\contentsline{section}{\mbox{\hyperlink{class_resource_manager}{Resource\+Manager}} \\*Manages resources within the application }{\pageref{class_resource_manager}}{} +\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1resource_1_1_resource_manager}{serif\+::resource\+::\+Resource\+Manager}} }{\pageref{classserif_1_1resource_1_1_resource_manager}}{} \item\contentsline{section}{\mbox{\hyperlink{classresource_manager_test}{resource\+Manager\+Test}} \\*Test suite for the resource\+Manager class }{\pageref{classresource_manager_test}}{} -\item\contentsline{section}{\mbox{\hyperlink{class_schur_compliment}{Schur\+Compliment}} \\*Represents the Schur complement operator used in the solution process }{\pageref{class_schur_compliment}}{} -\item\contentsline{section}{\mbox{\hyperlink{structsolver_bundle}{solver\+Bundle}} \\*Structure to manage the lifetime of MFEM solver objects }{\pageref{structsolver_bundle}}{} -\item\contentsline{section}{\mbox{\hyperlink{structpolycoeff_1_1x1_interp_coeff}{polycoeff\+::x1\+Interp\+Coeff}} \\*Coefficients for the interpolations of the surface location of a polytrope }{\pageref{structpolycoeff_1_1x1_interp_coeff}}{} +\item\contentsline{section}{\mbox{\hyperlink{classserif_1_1polytrope_1_1_schur_compliment}{serif\+::polytrope\+::\+Schur\+Compliment}} \\*Represents the Schur complement operator used in the solution process }{\pageref{classserif_1_1polytrope_1_1_schur_compliment}}{} +\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1polytrope_1_1solver_bundle}{serif\+::polytrope\+::solver\+Bundle}} \\*Structure to manage the lifetime of MFEM solver objects }{\pageref{structserif_1_1polytrope_1_1solver_bundle}}{} +\item\contentsline{section}{\mbox{\hyperlink{structserif_1_1polytrope_1_1polycoeff_1_1x1_interp_coeff}{serif\+::polytrope\+::polycoeff\+::x1\+Interp\+Coeff}} \\*Coefficients for the interpolations of the surface location of a polytrope }{\pageref{structserif_1_1polytrope_1_1polycoeff_1_1x1_interp_coeff}}{} \end{DoxyCompactList} diff --git a/docs/latex/files.tex b/docs/latex/files.tex index 062d7d8..aa64183 100644 --- a/docs/latex/files.tex +++ b/docs/latex/files.tex @@ -4,14 +4,8 @@ Here is a list of all files with brief descriptions\+:\begin{DoxyCompactList} \item\contentsline{section}{src/composition/public/\mbox{\hyperlink{composition_8h}{composition.\+h}} }{\pageref{composition_8h}}{} \item\contentsline{section}{src/config/private/\mbox{\hyperlink{config_8cpp}{config.\+cpp}} }{\pageref{config_8cpp}}{} \item\contentsline{section}{src/config/public/\mbox{\hyperlink{config_8h}{config.\+h}} }{\pageref{config_8h}}{} -\item\contentsline{section}{src/const/private/\mbox{\hyperlink{const_8cpp}{const.\+cpp}} }{\pageref{const_8cpp}}{} -\item\contentsline{section}{src/const/public/\mbox{\hyperlink{const_8h}{const.\+h}} }{\pageref{const_8h}}{} -\item\contentsline{section}{src/dobj/private/\mbox{\hyperlink{_d_object_8cpp}{DObject.\+cpp}} \\*Implementation of the \doxylink{class_d_object}{DObject} class }{\pageref{_d_object_8cpp}}{} -\item\contentsline{section}{src/dobj/private/\mbox{\hyperlink{_lockable_d_object_8cpp}{Lockable\+DObject.\+cpp}} }{\pageref{_lockable_d_object_8cpp}}{} -\item\contentsline{section}{src/dobj/private/\mbox{\hyperlink{_metadata_8cpp}{Metadata.\+cpp}} \\*Implementation of the \doxylink{class_metadata}{Metadata} class used in the dobj module }{\pageref{_metadata_8cpp}}{} -\item\contentsline{section}{src/dobj/public/\mbox{\hyperlink{_d_object_8h}{DObject.\+h}} \\*Defines the \doxylink{class_d_object}{DObject} class, a universal data container for the project }{\pageref{_d_object_8h}}{} -\item\contentsline{section}{src/dobj/public/\mbox{\hyperlink{_lockable_d_object_8h}{Lockable\+DObject.\+h}} \\*A lightweight wrapper for \doxylink{class_d_object}{DObject} that adds locking capabilities }{\pageref{_lockable_d_object_8h}}{} -\item\contentsline{section}{src/dobj/public/\mbox{\hyperlink{_metadata_8h}{Metadata.\+h}} \\*Public interface for the \doxylink{class_metadata}{Metadata} class used in the dobj module }{\pageref{_metadata_8h}}{} +\item\contentsline{section}{src/constants/private/\mbox{\hyperlink{const_8cpp}{const.\+cpp}} }{\pageref{const_8cpp}}{} +\item\contentsline{section}{src/constants/public/\mbox{\hyperlink{const_8h}{const.\+h}} }{\pageref{const_8h}}{} \item\contentsline{section}{src/eos/private/\mbox{\hyperlink{eos_i_o_8cpp}{eos\+IO.\+cpp}} }{\pageref{eos_i_o_8cpp}}{} \item\contentsline{section}{src/eos/private/\mbox{\hyperlink{helm_8cpp}{helm.\+cpp}} }{\pageref{helm_8cpp}}{} \item\contentsline{section}{src/eos/public/\mbox{\hyperlink{eos_i_o_8h}{eos\+IO.\+h}} }{\pageref{eos_i_o_8h}}{} @@ -24,17 +18,16 @@ Here is a list of all files with brief descriptions\+:\begin{DoxyCompactList} \item\contentsline{section}{src/network/private/\mbox{\hyperlink{network_8cpp}{network.\+cpp}} }{\pageref{network_8cpp}}{} \item\contentsline{section}{src/network/public/\mbox{\hyperlink{approx8_8h}{approx8.\+h}} \\*Header file for the Approx8 nuclear reaction network }{\pageref{approx8_8h}}{} \item\contentsline{section}{src/network/public/\mbox{\hyperlink{network_8h}{network.\+h}} }{\pageref{network_8h}}{} -\item\contentsline{section}{src/opac/public/\mbox{\hyperlink{opac_8h}{opac.\+h}} }{\pageref{opac_8h}}{} -\item\contentsline{section}{src/poly/coeff/private/\mbox{\hyperlink{poly_coeff_8cpp}{poly\+Coeff.\+cpp}} }{\pageref{poly_coeff_8cpp}}{} -\item\contentsline{section}{src/poly/coeff/public/\mbox{\hyperlink{poly_coeff_8h}{poly\+Coeff.\+h}} }{\pageref{poly_coeff_8h}}{} -\item\contentsline{section}{src/poly/solver/private/\mbox{\hyperlink{poly_solver_8cpp}{poly\+Solver.\+cpp}} }{\pageref{poly_solver_8cpp}}{} -\item\contentsline{section}{src/poly/solver/public/\mbox{\hyperlink{poly_solver_8h}{poly\+Solver.\+h}} }{\pageref{poly_solver_8h}}{} -\item\contentsline{section}{src/poly/utils/private/\mbox{\hyperlink{integrators_8cpp}{integrators.\+cpp}} }{\pageref{integrators_8cpp}}{} -\item\contentsline{section}{src/poly/utils/private/\mbox{\hyperlink{polytrope_operator_8cpp}{polytrope\+Operator.\+cpp}} }{\pageref{polytrope_operator_8cpp}}{} -\item\contentsline{section}{src/poly/utils/private/\mbox{\hyperlink{utilities_8cpp}{utilities.\+cpp}} }{\pageref{utilities_8cpp}}{} -\item\contentsline{section}{src/poly/utils/public/\mbox{\hyperlink{integrators_8h}{integrators.\+h}} \\*A collection of utilities for working with MFEM and solving the lane-\/emden equation }{\pageref{integrators_8h}}{} -\item\contentsline{section}{src/poly/utils/public/\mbox{\hyperlink{polytrope_operator_8h}{polytrope\+Operator.\+h}} }{\pageref{polytrope_operator_8h}}{} -\item\contentsline{section}{src/poly/utils/public/\mbox{\hyperlink{utilities_8h}{utilities.\+h}} }{\pageref{utilities_8h}}{} +\item\contentsline{section}{src/polytrope/coeff/private/\mbox{\hyperlink{poly_coeff_8cpp}{poly\+Coeff.\+cpp}} }{\pageref{poly_coeff_8cpp}}{} +\item\contentsline{section}{src/polytrope/coeff/public/\mbox{\hyperlink{poly_coeff_8h}{poly\+Coeff.\+h}} }{\pageref{poly_coeff_8h}}{} +\item\contentsline{section}{src/polytrope/solver/private/\mbox{\hyperlink{poly_solver_8cpp}{poly\+Solver.\+cpp}} }{\pageref{poly_solver_8cpp}}{} +\item\contentsline{section}{src/polytrope/solver/public/\mbox{\hyperlink{poly_solver_8h}{poly\+Solver.\+h}} }{\pageref{poly_solver_8h}}{} +\item\contentsline{section}{src/polytrope/utils/private/\mbox{\hyperlink{integrators_8cpp}{integrators.\+cpp}} }{\pageref{integrators_8cpp}}{} +\item\contentsline{section}{src/polytrope/utils/private/\mbox{\hyperlink{polytrope_operator_8cpp}{polytrope\+Operator.\+cpp}} }{\pageref{polytrope_operator_8cpp}}{} +\item\contentsline{section}{src/polytrope/utils/private/\mbox{\hyperlink{utilities_8cpp}{utilities.\+cpp}} }{\pageref{utilities_8cpp}}{} +\item\contentsline{section}{src/polytrope/utils/public/\mbox{\hyperlink{integrators_8h}{integrators.\+h}} \\*A collection of utilities for working with MFEM and solving the lane-\/emden equation }{\pageref{integrators_8h}}{} +\item\contentsline{section}{src/polytrope/utils/public/\mbox{\hyperlink{polytrope_operator_8h}{polytrope\+Operator.\+h}} }{\pageref{polytrope_operator_8h}}{} +\item\contentsline{section}{src/polytrope/utils/public/\mbox{\hyperlink{utilities_8h}{utilities.\+h}} }{\pageref{utilities_8h}}{} \item\contentsline{section}{src/probe/private/\mbox{\hyperlink{probe_8cpp}{probe.\+cpp}} }{\pageref{probe_8cpp}}{} \item\contentsline{section}{src/probe/public/\mbox{\hyperlink{probe_8h}{probe.\+h}} }{\pageref{probe_8h}}{} \item\contentsline{section}{src/resource/private/\mbox{\hyperlink{resource_manager_8cpp}{resource\+Manager.\+cpp}} }{\pageref{resource_manager_8cpp}}{} @@ -44,12 +37,8 @@ Here is a list of all files with brief descriptions\+:\begin{DoxyCompactList} \item\contentsline{section}{src/types/public/\mbox{\hyperlink{4_d_s_t_a_r_types_8h}{4\+DSTARTypes.\+h}} }{\pageref{4_d_s_t_a_r_types_8h}}{} \item\contentsline{section}{tests/composition/\mbox{\hyperlink{composition_test_8cpp}{composition\+Test.\+cpp}} }{\pageref{composition_test_8cpp}}{} \item\contentsline{section}{tests/composition\+\_\+sandbox/\mbox{\hyperlink{comp_8cpp}{comp.\+cpp}} }{\pageref{comp_8cpp}}{} -\item\contentsline{section}{tests/config/\mbox{\hyperlink{config_test_8cpp}{config\+Test.\+cpp}} \\*Unit tests for the \doxylink{class_config}{Config} class }{\pageref{config_test_8cpp}}{} +\item\contentsline{section}{tests/config/\mbox{\hyperlink{config_test_8cpp}{config\+Test.\+cpp}} \\*Unit tests for the Config class }{\pageref{config_test_8cpp}}{} \item\contentsline{section}{tests/const/\mbox{\hyperlink{const_test_8cpp}{const\+Test.\+cpp}} \\*Unit tests for the const class }{\pageref{const_test_8cpp}}{} -\item\contentsline{section}{tests/dobj/\mbox{\hyperlink{_d_object_test_8cpp}{DObject\+Test.\+cpp}} \\*Unit tests for the \doxylink{class_d_object}{DObject} class }{\pageref{_d_object_test_8cpp}}{} -\item\contentsline{section}{tests/dobj/\mbox{\hyperlink{_lockable_d_object_test_8cpp}{Lockable\+DObject\+Test.\+cpp}} \\*Unit tests for the \doxylink{class_lockable_d_object}{Lockable\+DObject} class }{\pageref{_lockable_d_object_test_8cpp}}{} -\item\contentsline{section}{tests/dobj/\mbox{\hyperlink{_metadata_test_8cpp}{Metadata\+Test.\+cpp}} \\*Unit tests and integration tests for the \doxylink{class_metadata}{Metadata} class }{\pageref{_metadata_test_8cpp}}{} -\item\contentsline{section}{tests/dobj\+\_\+sandbox/\mbox{\hyperlink{test_d_object_8cpp}{test\+DObject.\+cpp}} }{\pageref{test_d_object_8cpp}}{} \item\contentsline{section}{tests/eos/\mbox{\hyperlink{eos_test_8cpp}{eos\+Test.\+cpp}} }{\pageref{eos_test_8cpp}}{} \item\contentsline{section}{tests/mesh\+IO/\mbox{\hyperlink{mesh_i_o_test_8cpp}{mesh\+IOTest.\+cpp}} }{\pageref{mesh_i_o_test_8cpp}}{} \item\contentsline{section}{tests/network/\mbox{\hyperlink{approx8_test_8cpp}{approx8\+Test.\+cpp}} }{\pageref{approx8_test_8cpp}}{} diff --git a/docs/latex/refman.tex b/docs/latex/refman.tex index 81ad154..6857620 100644 --- a/docs/latex/refman.tex +++ b/docs/latex/refman.tex @@ -244,63 +244,65 @@ \chapter{File Index} \input{files} \chapter{Namespace Documentation} -\input{namespacecomposition} -\input{namespacehelmholtz} -\input{namespacelane_emden} -\input{namespacenn_approx8} -\input{namespacenuclear_network} -\input{namespacepolycoeff} \input{namespacepoly_m_f_e_m_utils} -\input{namespace_probe} \input{namespaceserif} +\input{namespaceserif_1_1composition} +\input{namespaceserif_1_1config} +\input{namespaceserif_1_1constant} +\input{namespaceserif_1_1eos} +\input{namespaceserif_1_1eos_1_1helmholtz} +\input{namespaceserif_1_1mesh} +\input{namespaceserif_1_1network} +\input{namespaceserif_1_1network_1_1approx8} +\input{namespaceserif_1_1polytrope} +\input{namespaceserif_1_1polytrope_1_1lane_emden} +\input{namespaceserif_1_1polytrope_1_1polycoeff} +\input{namespaceserif_1_1polytrope_1_1poly_m_f_e_m_utils} +\input{namespaceserif_1_1probe} +\input{namespaceserif_1_1resource} +\input{namespaceserif_1_1resource_1_1types} +\input{namespaceserif_1_1types} \input{namespaceserif_1_1utilities} -\input{namespace_s_s_e} \chapter{Class Documentation} -\input{classnn_approx8_1_1_approx8_network} +\input{classserif_1_1network_1_1approx8_1_1_approx8_network} \input{classapprox8_test} -\input{classcomposition_1_1_composition} -\input{structcomposition_1_1_composition_entry} +\input{classserif_1_1composition_1_1_composition} +\input{structserif_1_1composition_1_1_composition_entry} \input{classcomposition_test} -\input{class_config} \input{classconfig_test} \input{classconfig_test_private_accessor} -\input{struct_constant} -\input{class_constants} +\input{structserif_1_1constant_1_1_constant} +\input{classserif_1_1constant_1_1_constants} \input{classconst_test} -\input{class_d_object} -\input{class_d_object_test} -\input{structpolycoeff_1_1d_theta_interp_coeff} -\input{structhelmholtz_1_1_e_o_s} -\input{structhelmholtz_1_1_e_o_s_input} -\input{class_eos_i_o} +\input{structserif_1_1polytrope_1_1polycoeff_1_1d_theta_interp_coeff} +\input{structserif_1_1eos_1_1helmholtz_1_1_e_o_s} +\input{structserif_1_1eos_1_1helmholtz_1_1_e_o_s_input} +\input{classserif_1_1eos_1_1_eos_i_o} \input{classeos_test} -\input{structform_bundle} -\input{structcomposition_1_1_global_composition} -\input{class_g_m_r_e_s_inverter} -\input{structhelmholtz_1_1_h_e_l_m_table} -\input{structnn_approx8_1_1_jacobian} -\input{class_lockable_d_object} -\input{class_lockable_d_object_test} -\input{class_probe_1_1_log_manager} -\input{class_mesh_i_o} +\input{structserif_1_1polytrope_1_1form_bundle} +\input{structserif_1_1composition_1_1_global_composition} +\input{classserif_1_1polytrope_1_1_g_m_r_e_s_inverter} +\input{structserif_1_1eos_1_1helmholtz_1_1_h_e_l_m_table} +\input{structserif_1_1network_1_1approx8_1_1_jacobian} +\input{classserif_1_1probe_1_1_log_manager} +\input{classserif_1_1mesh_1_1_mesh_i_o} \input{classmesh_i_o_test} -\input{class_metadata} -\input{class_metadata_test} -\input{structnn_approx8_1_1_net} -\input{structnuclear_network_1_1_net_in} -\input{structnuclear_network_1_1_net_out} -\input{classnuclear_network_1_1_network} -\input{classpoly_m_f_e_m_utils_1_1_nonlinear_power_integrator} -\input{structnn_approx8_1_1_o_d_e} -\input{class_poly_solver} +\input{structserif_1_1network_1_1approx8_1_1_net} +\input{structserif_1_1network_1_1_net_in} +\input{structserif_1_1network_1_1_net_out} +\input{classserif_1_1network_1_1_network} +\input{classserif_1_1polytrope_1_1poly_m_f_e_m_utils_1_1_nonlinear_power_integrator} +\input{structserif_1_1network_1_1approx8_1_1_o_d_e} +\input{classserif_1_1polytrope_1_1_poly_solver} \input{classpoly_test} -\input{class_polytrope_operator} +\input{classserif_1_1polytrope_1_1_polytrope_operator} \input{classprobe_test} \input{class_resource_manager} +\input{classserif_1_1resource_1_1_resource_manager} \input{classresource_manager_test} -\input{class_schur_compliment} -\input{structsolver_bundle} -\input{structpolycoeff_1_1x1_interp_coeff} +\input{classserif_1_1polytrope_1_1_schur_compliment} +\input{structserif_1_1polytrope_1_1solver_bundle} +\input{structserif_1_1polytrope_1_1polycoeff_1_1x1_interp_coeff} \chapter{File Documentation} \input{mainpage_8md} \input{composition_8cpp} @@ -315,18 +317,6 @@ \input{const_8cpp_source} \input{const_8h} \input{const_8h_source} -\input{_d_object_8cpp} -\input{_d_object_8cpp_source} -\input{_lockable_d_object_8cpp} -\input{_lockable_d_object_8cpp_source} -\input{_metadata_8cpp} -\input{_metadata_8cpp_source} -\input{_d_object_8h} -\input{_d_object_8h_source} -\input{_lockable_d_object_8h} -\input{_lockable_d_object_8h_source} -\input{_metadata_8h} -\input{_metadata_8h_source} \input{eos_i_o_8cpp} \input{eos_i_o_8cpp_source} \input{helm_8cpp} @@ -351,8 +341,6 @@ \input{approx8_8h_source} \input{network_8h} \input{network_8h_source} -\input{opac_8h} -\input{opac_8h_source} \input{poly_coeff_8cpp} \input{poly_coeff_8cpp_source} \input{poly_coeff_8h} @@ -395,14 +383,6 @@ \input{config_test_8cpp_source} \input{const_test_8cpp} \input{const_test_8cpp_source} -\input{_d_object_test_8cpp} -\input{_d_object_test_8cpp_source} -\input{_lockable_d_object_test_8cpp} -\input{_lockable_d_object_test_8cpp_source} -\input{_metadata_test_8cpp} -\input{_metadata_test_8cpp_source} -\input{test_d_object_8cpp} -\input{test_d_object_8cpp_source} \input{eos_test_8cpp} \input{eos_test_8cpp_source} \input{mesh_i_o_test_8cpp} @@ -419,7 +399,7 @@ \input{_2_users_2tboudreaux_2_programming_2_s_e_ri_f_2src_2composition_2public_2composition_8h-example} \input{_constructing-example} \input{_2_users_2tboudreaux_2_programming_2_s_e_ri_f_2src_2network_2public_2approx8_8h-example} -\input{_2_users_2tboudreaux_2_programming_2_s_e_ri_f_2src_2poly_2solver_2public_2poly_solver_8h-example} +\input{_2_users_2tboudreaux_2_programming_2_s_e_ri_f_2src_2polytrope_2solver_2public_2poly_solver_8h-example} %--- End generated contents --- % Index \backmatter