engine_graph.h File Reference

#include "fourdst/composition/atomicSpecies.h"
#include "fourdst/composition/composition.h"
#include "fourdst/logging/logging.h"
#include "fourdst/config/config.h"
#include "gridfire/network.h"
#include "gridfire/reaction/reaction.h"
#include "gridfire/engine/engine_abstract.h"
#include "gridfire/screening/screening_abstract.h"
#include "gridfire/screening/screening_types.h"
#include "gridfire/partition/partition_abstract.h"
#include "gridfire/engine/procedures/construction.h"
#include <string>
#include <unordered_map>
#include <vector>
#include <memory>
#include <ranges>
#include <boost/numeric/ublas/matrix_sparse.hpp>
#include "cppad/cppad.hpp"
#include "cppad/utility/sparse_rc.hpp"
#include "cppad/speed/sparse_jac_fun.hpp"
#include "procedures/priming.h"
#include "quill/LogMacros.h"

Classes
class	gridfire::GraphEngine
	A reaction network engine that uses a graph-based representation. More...
struct	gridfire::GraphEngine::PrecomputedReaction
struct	gridfire::GraphEngine::constants
class	gridfire::GraphEngine::AtomicReverseRate

Namespaces
namespace	gridfire

Typedefs
typedef CppAD::AD< double >	gridfire::ADDouble
	Alias for CppAD AD type for double precision.

Variables
static constexpr double	gridfire::MIN_DENSITY_THRESHOLD = 1e-18
	Minimum density threshold below which reactions are ignored.
static constexpr double	gridfire::MIN_ABUNDANCE_THRESHOLD = 1e-18
	Minimum abundance threshold below which species are ignored.
static constexpr double	gridfire::MIN_JACOBIAN_THRESHOLD = 1e-24
	Minimum value for Jacobian matrix entries.