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docs(docs): asdded and cleaned up docs

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Emily Boudreaux
2025-07-24 11:10:45 -04:00
parent cc3708fda5
commit ba9b3e2392
808 changed files with 140326 additions and 9346 deletions
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docs/html/engine__graph_8h.html
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@@ -5,7 +5,7 @@
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<title>GridFire: src/network/include/gridfire/engine/engine_graph.h File Reference</title>
<title>GridFire: src/include/gridfire/engine/engine_graph.h File Reference</title>
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@@ -116,12 +116,19 @@ $(function(){initNavTree('engine__graph_8h.html',''); initResizable(true); });
<code>#include &quot;<a class="el" href="engine__abstract_8h_source.html">gridfire/engine/engine_abstract.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="screening__abstract_8h_source.html">gridfire/screening/screening_abstract.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="screening__types_8h_source.html">gridfire/screening/screening_types.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="partition__abstract_8h_source.html">gridfire/partition/partition_abstract.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="construction_8h_source.html">gridfire/engine/procedures/construction.h</a>&quot;</code><br />
<code>#include &lt;string&gt;</code><br />
<code>#include &lt;unordered_map&gt;</code><br />
<code>#include &lt;vector&gt;</code><br />
<code>#include &lt;memory&gt;</code><br />
<code>#include &lt;ranges&gt;</code><br />
<code>#include &lt;boost/numeric/ublas/matrix_sparse.hpp&gt;</code><br />
<code>#include &quot;cppad/cppad.hpp&quot;</code><br />
<code>#include &quot;cppad/utility/sparse_rc.hpp&quot;</code><br />
<code>#include &quot;cppad/speed/sparse_jac_fun.hpp&quot;</code><br />
<code>#include &quot;<a class="el" href="priming_8h_source.html">procedures/priming.h</a>&quot;</code><br />
<code>#include &quot;quill/LogMacros.h&quot;</code><br />
</div>
<p><a href="engine__graph_8h_source.html">Go to the source code of this file.</a></p>
<table class="memberdecls">
@@ -134,6 +141,8 @@ Classes</h2></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html">gridfire::GraphEngine::constants</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html">gridfire::GraphEngine::AtomicReverseRate</a></td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
Namespaces</h2></td></tr>
@@ -148,6 +157,8 @@ Typedefs</h2></td></tr>
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Variables</h2></td></tr>
<tr class="memitem:afd6f117eb2da3bab3873edc09d0926cf" id="r_afd6f117eb2da3bab3873edc09d0926cf"><td class="memItemLeft" align="right" valign="top">static bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#afd6f117eb2da3bab3873edc09d0926cf">gridfire::s_debug</a> = false</td></tr>
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<tr class="memitem:ada3c137c014ecd8d06200fea2d1a9f50" id="r_ada3c137c014ecd8d06200fea2d1a9f50"><td class="memItemLeft" align="right" valign="top">static constexpr double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#ada3c137c014ecd8d06200fea2d1a9f50">gridfire::MIN_DENSITY_THRESHOLD</a> = 1e-18</td></tr>
<tr class="memdesc:ada3c137c014ecd8d06200fea2d1a9f50"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum density threshold below which reactions are ignored. <br /></td></tr>
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@@ -163,7 +174,7 @@ Variables</h2></td></tr>
<!-- start footer part -->
<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
<ul>
<li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_fc4c7f03e1a69a98c370fae55a743828.html">network</a></li><li class="navelem"><a class="el" href="dir_5cccfa813acdf3744b542715860d37b2.html">include</a></li><li class="navelem"><a class="el" href="dir_2a1262ef5950eb718393488a3eb5aa9f.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_6b2e1e22dfdea3280d50981209bf7529.html">engine</a></li><li class="navelem"><a class="el" href="engine__graph_8h.html">engine_graph.h</a></li>
<li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_aff155d61c3b73b9ab7dcdc908c4d49e.html">engine</a></li><li class="navelem"><a class="el" href="engine__graph_8h.html">engine_graph.h</a></li>
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