183 lines
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183 lines
12 KiB
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<div id="projectname">GridFire<span id="projectnumber"> 0.0.1a</span>
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<div id="projectbrief">General Purpose Nuclear Network</div>
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<div class="headertitle"><div class="title">engine_graph.h File Reference</div></div>
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<div class="textblock"><code>#include "fourdst/composition/atomicSpecies.h"</code><br />
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<code>#include "fourdst/composition/composition.h"</code><br />
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<code>#include "fourdst/logging/logging.h"</code><br />
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<code>#include "fourdst/config/config.h"</code><br />
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<code>#include "<a class="el" href="network_8h_source.html">gridfire/network.h</a>"</code><br />
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<code>#include "<a class="el" href="reaction_8h_source.html">gridfire/reaction/reaction.h</a>"</code><br />
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<code>#include "<a class="el" href="engine__abstract_8h_source.html">gridfire/engine/engine_abstract.h</a>"</code><br />
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<code>#include "<a class="el" href="screening__abstract_8h_source.html">gridfire/screening/screening_abstract.h</a>"</code><br />
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<code>#include "<a class="el" href="screening__types_8h_source.html">gridfire/screening/screening_types.h</a>"</code><br />
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<code>#include "<a class="el" href="partition__abstract_8h_source.html">gridfire/partition/partition_abstract.h</a>"</code><br />
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<code>#include "<a class="el" href="construction_8h_source.html">gridfire/engine/procedures/construction.h</a>"</code><br />
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<code>#include <string></code><br />
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<code>#include <unordered_map></code><br />
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<code>#include <vector></code><br />
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<code>#include <memory></code><br />
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<code>#include <ranges></code><br />
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<code>#include <boost/numeric/ublas/matrix_sparse.hpp></code><br />
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<code>#include "cppad/cppad.hpp"</code><br />
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<code>#include "cppad/utility/sparse_rc.hpp"</code><br />
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<code>#include "cppad/speed/sparse_jac_fun.hpp"</code><br />
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<code>#include "<a class="el" href="priming_8h_source.html">procedures/priming.h</a>"</code><br />
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<code>#include "quill/LogMacros.h"</code><br />
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</div>
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<p><a href="engine__graph_8h_source.html">Go to the source code of this file.</a></p>
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<table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
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Classes</h2></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td></tr>
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<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A reaction network engine that uses a graph-based representation. <a href="classgridfire_1_1_graph_engine.html#details">More...</a><br /></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html">gridfire::GraphEngine::PrecomputedReaction</a></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html">gridfire::GraphEngine::constants</a></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html">gridfire::GraphEngine::AtomicReverseRate</a></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
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Namespaces</h2></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace  </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="typedef-members" name="typedef-members"></a>
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Typedefs</h2></td></tr>
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<tr class="memitem:a1121d0b2d005195333412559fa29d3cc" id="r_a1121d0b2d005195333412559fa29d3cc"><td class="memItemLeft" align="right" valign="top">typedef CppAD::AD< double > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc">gridfire::ADDouble</a></td></tr>
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<tr class="memdesc:a1121d0b2d005195333412559fa29d3cc"><td class="mdescLeft"> </td><td class="mdescRight">Alias for CppAD AD type for double precision. <br /></td></tr>
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<tr class="separator:a1121d0b2d005195333412559fa29d3cc"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="var-members" name="var-members"></a>
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Variables</h2></td></tr>
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<tr class="memitem:afd6f117eb2da3bab3873edc09d0926cf" id="r_afd6f117eb2da3bab3873edc09d0926cf"><td class="memItemLeft" align="right" valign="top">static bool </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#afd6f117eb2da3bab3873edc09d0926cf">gridfire::s_debug</a> = false</td></tr>
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<tr class="separator:afd6f117eb2da3bab3873edc09d0926cf"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ada3c137c014ecd8d06200fea2d1a9f50" id="r_ada3c137c014ecd8d06200fea2d1a9f50"><td class="memItemLeft" align="right" valign="top">static constexpr double </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#ada3c137c014ecd8d06200fea2d1a9f50">gridfire::MIN_DENSITY_THRESHOLD</a> = 1e-18</td></tr>
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<tr class="memdesc:ada3c137c014ecd8d06200fea2d1a9f50"><td class="mdescLeft"> </td><td class="mdescRight">Minimum density threshold below which reactions are ignored. <br /></td></tr>
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<tr class="separator:ada3c137c014ecd8d06200fea2d1a9f50"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a96c062f94713921e5d7568ecedcdcb06" id="r_a96c062f94713921e5d7568ecedcdcb06"><td class="memItemLeft" align="right" valign="top">static constexpr double </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06">gridfire::MIN_ABUNDANCE_THRESHOLD</a> = 1e-18</td></tr>
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<tr class="memdesc:a96c062f94713921e5d7568ecedcdcb06"><td class="mdescLeft"> </td><td class="mdescRight">Minimum abundance threshold below which species are ignored. <br /></td></tr>
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<tr class="separator:a96c062f94713921e5d7568ecedcdcb06"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ae01b1738df1921db565bcbd68dd6cf64" id="r_ae01b1738df1921db565bcbd68dd6cf64"><td class="memItemLeft" align="right" valign="top">static constexpr double </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#ae01b1738df1921db565bcbd68dd6cf64">gridfire::MIN_JACOBIAN_THRESHOLD</a> = 1e-24</td></tr>
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<tr class="memdesc:ae01b1738df1921db565bcbd68dd6cf64"><td class="mdescLeft"> </td><td class="mdescRight">Minimum value for Jacobian matrix entries. <br /></td></tr>
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<tr class="separator:ae01b1738df1921db565bcbd68dd6cf64"><td class="memSeparator" colspan="2"> </td></tr>
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