docs(rebuilt-docs): rebuild docs for v0.7.6rc4.0

This commit is contained in:
2026-04-20 12:45:31 -04:00
parent cf26983fe2
commit 7d611c56ad
2879 changed files with 341584 additions and 181414 deletions

View File

@@ -1,129 +1,142 @@
<map id="src/python/utils/bindings.cpp" name="src/python/utils/bindings.cpp">
<area shape="rect" id="Node000001" title=" " alt="" coords="765,5,952,31"/>
<area shape="rect" id="Node000002" title=" " alt="" coords="424,160,564,186"/>
<area shape="poly" id="edge1_Node000001_Node000002" title=" " alt="" coords="804,34,731,54,654,81,584,117,525,154,523,149,581,113,652,77,730,49,802,29"/>
<area shape="rect" id="Node000003" title=" " alt="" coords="792,79,925,105"/>
<area shape="poly" id="edge2_Node000001_Node000003" title=" " alt="" coords="861,31,861,63,856,63,856,31"/>
<area shape="rect" id="Node000004" href="$utils_2bindings_8h.html" title=" " alt="" coords="665,79,745,105"/>
<area shape="poly" id="edge3_Node000001_Node000004" title=" " alt="" coords="833,34,746,75,744,70,831,29"/>
<area shape="rect" id="Node000005" href="$hashing_8h.html" title=" " alt="" coords="1779,79,1927,105"/>
<area shape="poly" id="edge5_Node000001_Node000005" title=" " alt="" coords="953,24,1763,81,1763,87,952,29"/>
<area shape="rect" id="Node000031" href="$logging_8h.html" title=" " alt="" coords="960,79,1104,105"/>
<area shape="poly" id="edge40_Node000001_Node000031" title=" " alt="" coords="889,29,989,70,987,75,887,34"/>
<area shape="poly" id="edge4_Node000004_Node000002" title=" " alt="" coords="673,108,542,157,540,152,672,103"/>
<area shape="rect" id="Node000006" title=" " alt="" coords="1823,160,1883,186"/>
<area shape="poly" id="edge6_Node000005_Node000006" title=" " alt="" coords="1856,105,1856,144,1850,144,1850,105"/>
<area shape="rect" id="Node000007" title=" " alt="" coords="2369,338,2446,363"/>
<area shape="poly" id="edge7_Node000005_Node000007" title=" " alt="" coords="1928,90,2033,93,2154,102,2264,120,2308,134,2339,151,2357,168,2372,189,2393,236,2404,283,2409,322,2404,322,2399,284,2388,238,2367,192,2353,172,2335,155,2306,138,2263,125,2154,108,2033,99,1927,96"/>
<area shape="rect" id="Node000008" href="$exceptions_8h.html" title=" " alt="" coords="588,153,715,193"/>
<area shape="poly" id="edge8_Node000005_Node000008" title=" " alt="" coords="1778,101,731,169,731,164,1778,95"/>
<area shape="rect" id="Node000020" href="$reaction_8h.html" title="Defines classes for representing and managing nuclear reactions." alt="" coords="1677,419,1848,444"/>
<area shape="poly" id="edge29_Node000005_Node000020" title=" " alt="" coords="1871,103,1910,135,1951,179,1966,205,1976,231,1977,258,1966,283,1952,299,1937,308,1907,314,1874,317,1857,322,1840,332,1804,369,1778,407,1773,404,1800,365,1837,328,1855,317,1873,312,1906,308,1936,303,1949,295,1961,281,1971,257,1971,232,1962,207,1946,182,1906,138,1868,107"/>
<area shape="rect" id="Node000009" href="$error__gridfire_8h.html" title=" " alt="" coords="453,330,581,371"/>
<area shape="poly" id="edge9_Node000008_Node000009" title=" " alt="" coords="591,196,536,219,515,231,502,243,495,260,494,278,503,315,498,316,489,279,490,258,497,240,511,227,534,214,589,191"/>
<area shape="rect" id="Node000012" href="$error__engine_8h.html" title=" " alt="" coords="512,241,639,282"/>
<area shape="poly" id="edge12_Node000008_Node000012" title=" " alt="" coords="636,196,605,231,601,228,632,192"/>
<area shape="rect" id="Node000013" href="$error__utils_8h.html" title=" " alt="" coords="157,241,285,282"/>
<area shape="poly" id="edge14_Node000008_Node000013" title=" " alt="" coords="588,194,578,196,441,220,300,244,299,238,440,214,576,191,587,188"/>
<area shape="rect" id="Node000014" href="$error__debug_8h.html" title=" " alt="" coords="816,241,943,282"/>
<area shape="poly" id="edge16_Node000008_Node000014" title=" " alt="" coords="704,191,815,233,813,238,702,196"/>
<area shape="rect" id="Node000017" href="$error__policy_8h.html" title="Defines custom exception types related to network policy construction and verification." alt="" coords="5,241,133,282"/>
<area shape="poly" id="edge21_Node000008_Node000017" title=" " alt="" coords="588,194,577,196,459,213,364,220,269,227,149,244,148,238,269,222,364,215,458,208,577,191,587,189"/>
<area shape="rect" id="Node000018" href="$error__reaction_8h.html" title=" " alt="" coords="664,241,791,282"/>
<area shape="poly" id="edge23_Node000008_Node000018" title=" " alt="" coords="671,192,702,228,699,231,667,196"/>
<area shape="rect" id="Node000019" href="$error__solver_8h.html" title=" " alt="" coords="309,241,437,282"/>
<area shape="poly" id="edge27_Node000008_Node000019" title=" " alt="" coords="589,197,451,239,450,234,587,191"/>
<area shape="rect" id="Node000010" title=" " alt="" coords="478,419,556,444"/>
<area shape="poly" id="edge10_Node000009_Node000010" title=" " alt="" coords="520,371,520,403,514,403,514,371"/>
<area shape="rect" id="Node000011" title=" " alt="" coords="892,419,945,444"/>
<area shape="poly" id="edge11_Node000009_Node000011" title=" " alt="" coords="582,362,877,419,876,425,581,367"/>
<area shape="poly" id="edge13_Node000012_Node000009" title=" " alt="" coords="565,284,541,319,537,316,560,281"/>
<area shape="poly" id="edge15_Node000013_Node000009" title=" " alt="" coords="286,279,439,324,438,329,284,284"/>
<area shape="poly" id="edge20_Node000014_Node000009" title=" " alt="" coords="816,282,804,285,596,334,595,328,803,279,815,277"/>
<area shape="poly" id="edge18_Node000014_Node000011" title=" " alt="" coords="891,282,908,329,919,403,914,404,902,331,886,283"/>
<area shape="rect" id="Node000015" title=" " alt="" coords="781,338,893,363"/>
<area shape="poly" id="edge17_Node000014_Node000015" title=" " alt="" coords="872,284,852,325,847,323,868,281"/>
<area shape="rect" id="Node000016" title=" " alt="" coords="698,338,757,363"/>
<area shape="poly" id="edge19_Node000014_Node000016" title=" " alt="" coords="846,285,763,332,761,327,844,280"/>
<area shape="poly" id="edge22_Node000017_Node000009" title=" " alt="" coords="134,277,146,279,301,310,438,334,437,339,300,315,144,285,133,282"/>
<area shape="poly" id="edge26_Node000018_Node000009" title=" " alt="" coords="681,285,580,326,578,321,679,280"/>
<area shape="poly" id="edge24_Node000018_Node000011" title=" " alt="" coords="712,284,697,304,685,326,681,349,689,369,700,379,718,388,768,404,877,423,876,428,767,409,716,393,697,383,684,372,676,349,680,324,693,301,707,281"/>
<area shape="poly" id="edge25_Node000018_Node000016" title=" " alt="" coords="730,283,730,322,725,322,725,283"/>
<area shape="poly" id="edge28_Node000019_Node000009" title=" " alt="" coords="407,280,473,320,470,324,404,285"/>
<area shape="rect" id="Node000021" title=" " alt="" coords="1663,500,1723,526"/>
<area shape="poly" id="edge30_Node000020_Node000021" title=" " alt="" coords="1754,447,1716,490,1712,486,1750,443"/>
<area shape="rect" id="Node000022" title=" " alt="" coords="1747,500,1834,526"/>
<area shape="poly" id="edge31_Node000020_Node000022" title=" " alt="" coords="1769,444,1783,484,1778,486,1764,446"/>
<area shape="rect" id="Node000023" title=" " alt="" coords="2178,500,2384,526"/>
<area shape="poly" id="edge32_Node000020_Node000023" title=" " alt="" coords="1848,442,2167,490,2194,494,2193,499,2166,495,1848,448"/>
<area shape="rect" id="Node000024" title=" " alt="" coords="1858,500,2021,526"/>
<area shape="poly" id="edge33_Node000020_Node000024" title=" " alt="" coords="1791,442,1900,491,1898,496,1789,447"/>
<area shape="rect" id="Node000025" title=" " alt="" coords="2408,500,2506,526"/>
<area shape="poly" id="edge34_Node000020_Node000025" title=" " alt="" coords="1848,433,2096,448,2246,465,2396,490,2408,493,2407,498,2395,495,2245,470,2095,454,1848,438"/>
<area shape="rect" id="Node000026" title=" " alt="" coords="2044,500,2155,526"/>
<area shape="poly" id="edge35_Node000020_Node000026" title=" " alt="" coords="1823,442,2034,490,2045,493,2043,498,2032,495,1822,448"/>
<area shape="rect" id="Node000027" title=" " alt="" coords="1310,500,1367,526"/>
<area shape="poly" id="edge36_Node000020_Node000027" title=" " alt="" coords="1676,442,1536,460,1457,475,1380,495,1376,496,1375,491,1379,490,1456,470,1535,455,1676,437"/>
<area shape="rect" id="Node000028" title=" " alt="" coords="1536,500,1639,526"/>
<area shape="poly" id="edge37_Node000020_Node000028" title=" " alt="" coords="1737,447,1629,496,1627,491,1734,442"/>
<area shape="rect" id="Node000029" title=" " alt="" coords="1392,500,1512,526"/>
<area shape="poly" id="edge38_Node000020_Node000029" title=" " alt="" coords="1714,448,1524,495,1512,498,1511,493,1523,490,1712,442"/>
<area shape="rect" id="Node000030" title=" " alt="" coords="1059,492,1194,533"/>
<area shape="poly" id="edge39_Node000020_Node000030" title=" " alt="" coords="1677,446,1210,504,1209,498,1676,441"/>
<area shape="poly" id="edge78_Node000031_Node000007" title=" " alt="" coords="1104,91,1250,95,1447,104,1671,122,1896,150,1998,165,2077,179,2154,201,2249,239,2287,259,2324,282,2384,326,2381,330,2321,286,2285,263,2247,244,2152,206,2076,184,1997,171,1895,155,1670,127,1447,109,1250,100,1104,96"/>
<area shape="poly" id="edge77_Node000031_Node000011" title=" " alt="" coords="1030,106,930,405,925,403,1025,104"/>
<area shape="poly" id="edge76_Node000031_Node000030" title=" " alt="" coords="1032,105,1023,161,1016,247,1017,296,1022,346,1033,396,1051,443,1065,463,1083,481,1079,484,1061,467,1047,446,1028,398,1017,347,1012,296,1011,247,1017,160,1026,104"/>
<area shape="rect" id="Node000032" href="$engine__abstract_8h.html" title="Abstract interfaces for reaction network engines in GridFire." alt="" coords="1588,153,1732,193"/>
<area shape="poly" id="edge41_Node000031_Node000032" title=" " alt="" coords="1105,100,1572,158,1572,163,1104,105"/>
<area shape="poly" id="edge42_Node000032_Node000020" title=" " alt="" coords="1694,192,1718,213,1739,240,1756,282,1765,327,1767,403,1762,403,1759,328,1751,284,1735,243,1715,217,1690,196"/>
<area shape="poly" id="edge73_Node000032_Node000026" title=" " alt="" coords="1733,181,1811,191,1900,193,2018,194,2077,197,2130,205,2175,218,2192,228,2206,240,2224,271,2228,305,2222,340,2208,376,2188,410,2166,441,2124,491,2120,487,2162,438,2184,407,2203,373,2217,339,2223,305,2219,272,2202,243,2189,232,2173,223,2129,210,2076,203,2018,199,1900,199,1810,196,1732,186"/>
<area shape="poly" id="edge72_Node000032_Node000027" title=" " alt="" coords="1587,183,1522,191,1454,204,1395,221,1373,232,1359,243,1341,271,1328,302,1322,335,1319,369,1324,434,1334,484,1328,485,1318,434,1314,369,1316,335,1323,300,1336,268,1355,240,1371,227,1393,216,1453,199,1521,186,1587,178"/>
<area shape="rect" id="Node000033" href="$types_8h.html" title=" " alt="" coords="1376,419,1519,444"/>
<area shape="poly" id="edge43_Node000032_Node000033" title=" " alt="" coords="1587,184,1525,192,1460,204,1405,221,1384,232,1371,243,1367,253,1365,268,1369,306,1379,343,1390,369,1404,390,1422,407,1418,411,1400,393,1385,372,1374,345,1364,307,1360,268,1361,252,1367,240,1381,227,1403,216,1459,199,1524,187,1587,178"/>
<area shape="rect" id="Node000034" href="$screening__abstract_8h.html" title=" " alt="" coords="1485,330,1632,371"/>
<area shape="poly" id="edge46_Node000032_Node000034" title=" " alt="" coords="1631,196,1606,217,1585,243,1570,279,1563,315,1558,314,1565,277,1580,240,1602,213,1627,192"/>
<area shape="rect" id="Node000035" href="$screening__types_8h.html" title=" " alt="" coords="1594,241,1725,282"/>
<area shape="poly" id="edge51_Node000032_Node000035" title=" " alt="" coords="1662,194,1662,226,1657,226,1657,194"/>
<area shape="rect" id="Node000037" href="$reporting_8h.html" title=" " alt="" coords="1093,330,1232,371"/>
<area shape="poly" id="edge54_Node000032_Node000037" title=" " alt="" coords="1587,177,1519,182,1439,193,1355,212,1276,244,1250,260,1226,279,1188,320,1184,316,1223,275,1247,255,1273,239,1353,207,1438,187,1518,176,1587,172"/>
<area shape="rect" id="Node000041" href="$building_8h.html" title="Defines types related to building reaction networks in the GridFire engine." alt="" coords="1381,241,1520,282"/>
<area shape="poly" id="edge60_Node000032_Node000041" title=" " alt="" coords="1613,196,1513,237,1511,232,1611,191"/>
<area shape="rect" id="Node000043" href="$jacobian_8h.html" title="Wrapper for handling the network Jacobian matrix in GridFire. Currently uses Eigen&#39;s SparseMatrix." alt="" coords="2053,241,2192,282"/>
<area shape="poly" id="edge62_Node000032_Node000043" title=" " alt="" coords="1733,185,2038,242,2037,247,1732,190"/>
<area shape="rect" id="Node000044" title=" " alt="" coords="2470,330,2630,371"/>
<area shape="poly" id="edge71_Node000032_Node000044" title=" " alt="" coords="1733,181,1811,191,1934,202,2031,207,2127,216,2248,239,2315,257,2381,278,2493,321,2491,326,2379,283,2313,262,2247,244,2126,221,2030,212,1934,207,1810,196,1732,186"/>
<area shape="rect" id="Node000048" title=" " alt="" coords="1899,249,1951,274"/>
<area shape="poly" id="edge74_Node000032_Node000048" title=" " alt="" coords="1733,190,1808,211,1887,239,1889,240,1887,245,1885,244,1806,217,1731,195"/>
<area shape="rect" id="Node000049" title=" " alt="" coords="1800,249,1874,274"/>
<area shape="poly" id="edge75_Node000032_Node000049" title=" " alt="" coords="1701,191,1800,239,1797,244,1699,196"/>
<area shape="poly" id="edge45_Node000033_Node000029" title=" " alt="" coords="1451,445,1453,484,1448,485,1446,445"/>
<area shape="poly" id="edge44_Node000033_Node000030" title=" " alt="" coords="1399,448,1210,494,1209,489,1398,442"/>
<area shape="poly" id="edge47_Node000034_Node000020" title=" " alt="" coords="1610,369,1718,410,1716,415,1608,374"/>
<area shape="poly" id="edge48_Node000034_Node000023" title=" " alt="" coords="1632,365,1644,368,2212,493,2211,499,1643,373,1631,371"/>
<area shape="poly" id="edge50_Node000034_Node000027" title=" " alt="" coords="1561,371,1554,409,1546,429,1534,446,1515,462,1497,472,1462,480,1425,484,1380,495,1378,496,1376,491,1379,490,1424,479,1461,475,1495,467,1512,458,1530,443,1541,426,1549,407,1555,371"/>
<area shape="poly" id="edge49_Node000034_Node000029" title=" " alt="" coords="1572,370,1584,406,1584,427,1578,446,1565,462,1549,476,1513,496,1511,492,1546,472,1561,459,1573,443,1579,426,1578,407,1567,372"/>
<area shape="poly" id="edge52_Node000035_Node000034" title=" " alt="" coords="1638,285,1595,322,1591,318,1635,280"/>
<area shape="rect" id="Node000036" title=" " alt="" coords="1656,338,1724,363"/>
<area shape="poly" id="edge53_Node000035_Node000036" title=" " alt="" coords="1669,282,1684,322,1679,324,1664,283"/>
<area shape="poly" id="edge56_Node000037_Node000011" title=" " alt="" coords="1102,374,961,419,959,414,1101,369"/>
<area shape="poly" id="edge59_Node000037_Node000030" title=" " alt="" coords="1114,373,1084,393,1061,420,1057,436,1061,451,1072,467,1086,481,1082,485,1068,470,1056,454,1052,436,1056,417,1080,389,1111,369"/>
<area shape="rect" id="Node000038" title=" " alt="" coords="1070,419,1116,444"/>
<area shape="poly" id="edge55_Node000037_Node000038" title=" " alt="" coords="1147,373,1116,409,1112,405,1143,369"/>
<area shape="rect" id="Node000039" title=" " alt="" coords="1140,419,1208,444"/>
<area shape="poly" id="edge57_Node000037_Node000039" title=" " alt="" coords="1168,371,1173,403,1168,403,1163,371"/>
<area shape="rect" id="Node000040" title=" " alt="" coords="1232,419,1300,444"/>
<area shape="poly" id="edge58_Node000037_Node000040" title=" " alt="" coords="1190,369,1240,407,1237,411,1186,373"/>
<area shape="rect" id="Node000042" title=" " alt="" coords="1400,338,1460,363"/>
<area shape="poly" id="edge61_Node000041_Node000042" title=" " alt="" coords="1448,283,1439,323,1434,322,1443,282"/>
<area shape="poly" id="edge68_Node000043_Node000007" title=" " alt="" coords="2192,280,2351,327,2358,330,2357,335,2350,333,2191,285"/>
<area shape="poly" id="edge63_Node000043_Node000023" title=" " alt="" coords="2140,281,2175,328,2229,414,2269,485,2265,487,2224,416,2171,332,2136,284"/>
<area shape="poly" id="edge65_Node000043_Node000025" title=" " alt="" coords="2150,280,2430,488,2427,492,2147,285"/>
<area shape="poly" id="edge69_Node000043_Node000026" title=" " alt="" coords="2136,281,2147,304,2156,329,2158,350,2156,371,2137,434,2115,487,2110,485,2132,433,2150,370,2153,350,2150,331,2142,306,2131,283"/>
<area shape="poly" id="edge64_Node000043_Node000044" title=" " alt="" coords="2192,274,2456,327,2454,332,2191,279"/>
<area shape="rect" id="Node000045" title=" " alt="" coords="1851,338,1978,363"/>
<area shape="poly" id="edge66_Node000043_Node000045" title=" " alt="" coords="2076,285,1958,334,1956,329,2074,280"/>
<area shape="rect" id="Node000046" title=" " alt="" coords="2002,338,2051,363"/>
<area shape="poly" id="edge67_Node000043_Node000046" title=" " alt="" coords="2102,285,2052,329,2049,325,2099,281"/>
<area shape="rect" id="Node000047" title=" " alt="" coords="2074,338,2141,363"/>
<area shape="poly" id="edge70_Node000043_Node000047" title=" " alt="" coords="2122,283,2115,323,2110,322,2116,282"/>
<area shape="rect" id="Node000001" title=" " alt="" coords="941,5,1128,31"/>
<area shape="rect" id="Node000002" title=" " alt="" coords="822,160,962,186"/>
<area shape="poly" id="edge1_Node000001_Node000002" title=" " alt="" coords="1018,30,988,54,958,81,930,115,907,149,904,145,925,112,954,77,984,50,1013,33"/>
<area shape="rect" id="Node000003" title=" " alt="" coords="968,79,1101,105"/>
<area shape="poly" id="edge2_Node000001_Node000003" title=" " alt="" coords="1036,29,1037,65,1032,62,1033,33"/>
<area shape="rect" id="Node000004" href="$utils_2bindings_8h.html" title=" " alt="" coords="813,79,893,105"/>
<area shape="poly" id="edge3_Node000001_Node000004" title=" " alt="" coords="1001,33,899,75,897,70,1006,30"/>
<area shape="rect" id="Node000005" href="$hashing_8h.html" title=" " alt="" coords="1024,160,1173,186"/>
<area shape="poly" id="edge5_Node000001_Node000005" title=" " alt="" coords="1061,29,1092,49,1105,62,1115,78,1121,95,1121,113,1112,148,1108,144,1116,113,1115,96,1111,80,1101,66,1088,53,1061,34"/>
<area shape="rect" id="Node000032" href="$logging_8h.html" title=" " alt="" coords="1868,79,2012,105"/>
<area shape="poly" id="edge41_Node000001_Node000032" title=" " alt="" coords="1129,24,1854,82,1850,85,1129,30"/>
<area shape="poly" id="edge4_Node000004_Node000002" title=" " alt="" coords="860,103,882,147,877,145,858,108"/>
<area shape="rect" id="Node000006" title=" " alt="" coords="1194,426,1254,452"/>
<area shape="poly" id="edge6_Node000005_Node000006" title=" " alt="" coords="1104,184,1138,264,1187,369,1211,414,1206,411,1183,372,1133,266,1102,189"/>
<area shape="rect" id="Node000007" title=" " alt="" coords="2328,338,2405,363"/>
<area shape="poly" id="edge7_Node000005_Node000007" title=" " alt="" coords="1173,171,1398,173,1697,181,1850,189,1991,201,2112,218,2203,239,2244,256,2283,279,2345,328,2340,327,2280,284,2242,261,2202,244,2112,223,1991,207,1849,195,1697,186,1398,178,1173,177"/>
<area shape="rect" id="Node000008" title=" " alt="" coords="290,241,459,282"/>
<area shape="poly" id="edge8_Node000005_Node000008" title=" " alt="" coords="1021,187,975,196,835,210,726,218,615,227,475,243,474,238,615,221,725,213,835,205,974,191,1026,186"/>
<area shape="rect" id="Node000009" href="$exceptions_8h.html" title=" " alt="" coords="483,241,610,282"/>
<area shape="poly" id="edge9_Node000005_Node000009" title=" " alt="" coords="1022,187,626,251,625,245,1026,185"/>
<area shape="rect" id="Node000021" href="$reaction_8h.html" title="Defines classes for representing and managing nuclear reactions." alt="" coords="2141,426,2312,452"/>
<area shape="poly" id="edge30_Node000005_Node000021" title=" " alt="" coords="1173,174,1276,181,1406,192,1550,211,1692,239,1838,280,1979,330,2100,379,2189,420,2184,419,2098,384,1977,335,1836,285,1691,244,1549,216,1406,198,1276,186,1173,180"/>
<area shape="rect" id="Node000010" href="$error__gridfire_8h.html" title=" " alt="" coords="467,419,594,459"/>
<area shape="poly" id="edge10_Node000009_Node000010" title=" " alt="" coords="480,281,471,285,425,289,366,289,230,287,162,289,101,296,50,309,31,319,16,332,10,341,8,350,10,359,16,369,37,380,76,390,192,408,329,421,454,432,449,434,329,427,191,413,75,395,35,385,13,373,5,362,3,350,5,339,12,328,28,315,48,304,100,290,162,284,230,282,366,284,425,283,470,279,485,279"/>
<area shape="rect" id="Node000013" href="$error__engine_8h.html" title=" " alt="" coords="483,330,610,371"/>
<area shape="poly" id="edge13_Node000009_Node000013" title=" " alt="" coords="548,280,549,316,544,313,545,285"/>
<area shape="rect" id="Node000014" href="$error__utils_8h.html" title=" " alt="" coords="27,330,154,371"/>
<area shape="poly" id="edge15_Node000009_Node000014" title=" " alt="" coords="480,280,471,285,388,299,322,308,255,317,171,332,168,327,254,312,321,303,387,294,470,279,485,279"/>
<area shape="rect" id="Node000015" href="$error__debug_8h.html" title=" " alt="" coords="635,330,762,371"/>
<area shape="poly" id="edge17_Node000009_Node000015" title=" " alt="" coords="581,280,654,322,648,322,580,285"/>
<area shape="rect" id="Node000018" href="$error__policy_8h.html" title="Defines custom exception types related to network policy construction and verification." alt="" coords="179,330,306,371"/>
<area shape="poly" id="edge22_Node000009_Node000018" title=" " alt="" coords="480,283,322,329,320,324,485,280"/>
<area shape="rect" id="Node000019" href="$error__reaction_8h.html" title=" " alt="" coords="787,330,914,371"/>
<area shape="poly" id="edge24_Node000009_Node000019" title=" " alt="" coords="611,278,775,326,769,327,610,284"/>
<area shape="rect" id="Node000020" href="$error__solver_8h.html" title=" " alt="" coords="331,330,458,371"/>
<area shape="poly" id="edge28_Node000009_Node000020" title=" " alt="" coords="514,281,443,325,440,320,510,284"/>
<area shape="rect" id="Node000011" title=" " alt="" coords="492,515,569,540"/>
<area shape="poly" id="edge11_Node000010_Node000011" title=" " alt="" coords="532,458,532,501,528,498,528,462"/>
<area shape="rect" id="Node000012" title=" " alt="" coords="900,515,953,540"/>
<area shape="poly" id="edge12_Node000010_Node000012" title=" " alt="" coords="595,454,607,457,887,518,882,518,606,462,594,459"/>
<area shape="poly" id="edge14_Node000013_Node000010" title=" " alt="" coords="545,369,539,405,535,401,541,373"/>
<area shape="poly" id="edge16_Node000014_Node000010" title=" " alt="" coords="154,365,167,368,453,422,450,427,166,373,155,371"/>
<area shape="poly" id="edge21_Node000015_Node000010" title=" " alt="" coords="663,370,583,414,581,409,658,372"/>
<area shape="poly" id="edge19_Node000015_Node000012" title=" " alt="" coords="713,369,748,413,795,457,841,486,888,511,882,510,838,491,791,461,744,416,711,374"/>
<area shape="rect" id="Node000016" title=" " alt="" coords="618,426,731,452"/>
<area shape="poly" id="edge18_Node000015_Node000016" title=" " alt="" coords="695,369,684,413,680,409,691,373"/>
<area shape="rect" id="Node000017" title=" " alt="" coords="805,426,864,452"/>
<area shape="poly" id="edge20_Node000015_Node000017" title=" " alt="" coords="730,369,805,418,800,417,729,374"/>
<area shape="poly" id="edge23_Node000018_Node000010" title=" " alt="" coords="307,368,454,413,449,415,306,374"/>
<area shape="poly" id="edge27_Node000019_Node000010" title=" " alt="" coords="789,368,609,419,608,414,784,369"/>
<area shape="poly" id="edge25_Node000019_Node000012" title=" " alt="" coords="860,369,918,502,913,499,857,373"/>
<area shape="poly" id="edge26_Node000019_Node000017" title=" " alt="" coords="849,369,841,413,837,409,845,373"/>
<area shape="poly" id="edge29_Node000020_Node000010" title=" " alt="" coords="426,369,490,410,484,410,425,374"/>
<area shape="rect" id="Node000022" title=" " alt="" coords="2055,515,2115,540"/>
<area shape="poly" id="edge31_Node000021_Node000022" title=" " alt="" coords="2209,452,2119,509,2117,504,2204,453"/>
<area shape="rect" id="Node000023" title=" " alt="" coords="1392,515,1479,540"/>
<area shape="poly" id="edge32_Node000021_Node000023" title=" " alt="" coords="2143,450,1495,523,1495,517,2138,450"/>
<area shape="rect" id="Node000024" title=" " alt="" coords="2326,515,2532,540"/>
<area shape="poly" id="edge33_Node000021_Node000024" title=" " alt="" coords="2255,450,2390,509,2384,508,2254,455"/>
<area shape="rect" id="Node000025" title=" " alt="" coords="2140,515,2302,540"/>
<area shape="poly" id="edge34_Node000021_Node000025" title=" " alt="" coords="2228,450,2225,501,2221,497,2224,454"/>
<area shape="rect" id="Node000026" title=" " alt="" coords="2556,515,2654,540"/>
<area shape="poly" id="edge35_Node000021_Node000026" title=" " alt="" coords="2293,450,2411,473,2544,505,2556,510,2551,510,2543,510,2409,479,2292,455"/>
<area shape="rect" id="Node000027" title=" " alt="" coords="1821,515,1931,540"/>
<area shape="poly" id="edge36_Node000021_Node000027" title=" " alt="" coords="2180,452,1940,513,1939,508,2174,453"/>
<area shape="rect" id="Node000028" title=" " alt="" coords="1974,515,2031,540"/>
<area shape="poly" id="edge37_Node000021_Node000028" title=" " alt="" coords="2193,452,2043,510,2041,511,2040,506,2041,505,2187,453"/>
<area shape="rect" id="Node000029" title=" " alt="" coords="1631,515,1734,540"/>
<area shape="poly" id="edge38_Node000021_Node000029" title=" " alt="" coords="2152,452,1750,518,1749,513,2147,453"/>
<area shape="rect" id="Node000030" title=" " alt="" coords="2678,515,2799,540"/>
<area shape="poly" id="edge39_Node000021_Node000030" title=" " alt="" coords="2313,448,2477,471,2667,505,2684,511,2678,510,2666,510,2477,476,2312,453"/>
<area shape="rect" id="Node000031" title=" " alt="" coords="2823,507,2958,548"/>
<area shape="poly" id="edge40_Node000021_Node000031" title=" " alt="" coords="2313,444,2533,466,2669,483,2810,507,2805,507,2668,488,2533,471,2312,450"/>
<area shape="poly" id="edge90_Node000032_Node000007" title=" " alt="" coords="2012,90,2102,98,2153,107,2206,121,2257,140,2305,166,2348,199,2383,240,2392,261,2392,283,2381,326,2377,322,2387,283,2386,262,2379,243,2344,203,2302,170,2255,145,2204,126,2152,113,2102,103,2013,95"/>
<area shape="poly" id="edge89_Node000032_Node000012" title=" " alt="" coords="1865,102,1661,132,1531,154,1395,180,1262,211,1143,247,1045,287,1007,309,979,332,964,350,952,371,936,417,929,462,927,501,923,498,924,462,931,416,947,369,959,347,975,328,1004,305,1043,282,1141,242,1261,206,1394,175,1530,148,1661,127,1870,101"/>
<area shape="poly" id="edge87_Node000032_Node000031" title=" " alt="" coords="2012,95,2261,112,2580,145,2731,167,2855,193,2904,208,2941,224,2966,241,2974,260,2974,352,2970,408,2949,461,2922,498,2920,493,2944,458,2965,407,2969,352,2969,261,2961,244,2939,228,2902,213,2854,198,2730,172,2580,150,2261,118,2012,100"/>
<area shape="rect" id="Node000033" href="$engine__abstract_8h.html" title="Abstract interfaces for reaction network engines in GridFire." alt="" coords="2001,153,2145,193"/>
<area shape="poly" id="edge42_Node000032_Node000033" title=" " alt="" coords="1960,102,2030,145,2025,144,1959,108"/>
<area shape="rect" id="Node000047" href="$blob_8h.html" title="Container class for managing multiple scratchpad instances." alt="" coords="1502,241,1679,282"/>
<area shape="poly" id="edge88_Node000032_Node000047" title=" " alt="" coords="1917,104,1645,237,1644,232,1912,106"/>
<area shape="poly" id="edge68_Node000033_Node000013" title=" " alt="" coords="1998,179,1772,197,1434,227,1036,271,829,299,626,332,625,327,828,294,1035,266,1433,221,1771,192,2003,178"/>
<area shape="poly" id="edge43_Node000033_Node000021" title=" " alt="" coords="2063,192,2048,236,2045,259,2050,281,2078,325,2114,363,2154,393,2191,419,2186,418,2151,398,2111,367,2073,328,2045,283,2040,259,2043,235,2059,195"/>
<area shape="poly" id="edge84_Node000033_Node000027" title=" " alt="" coords="2059,192,2023,243,1981,314,1943,387,1888,503,1885,498,1938,385,1976,312,2019,240,2054,195"/>
<area shape="poly" id="edge83_Node000033_Node000028" title=" " alt="" coords="2062,192,2040,242,2022,314,2012,386,2004,501,2000,498,2006,385,2017,313,2035,240,2058,196"/>
<area shape="rect" id="Node000034" href="$types_2types_8h.html" title=" " alt="" coords="2791,426,2934,452"/>
<area shape="poly" id="edge44_Node000033_Node000034" title=" " alt="" coords="2145,172,2246,177,2371,187,2509,207,2646,239,2702,254,2747,267,2787,289,2828,328,2842,347,2851,369,2861,412,2857,409,2846,371,2837,350,2824,332,2784,293,2745,272,2701,259,2644,244,2508,212,2371,193,2245,182,2146,178"/>
<area shape="rect" id="Node000035" href="$screening__abstract_8h.html" title=" " alt="" coords="2157,330,2304,371"/>
<area shape="poly" id="edge47_Node000033_Node000035" title=" " alt="" coords="2135,191,2173,211,2204,240,2223,276,2231,316,2226,313,2218,278,2200,243,2170,216,2135,197"/>
<area shape="rect" id="Node000036" href="$screening__types_8h.html" title=" " alt="" coords="2059,241,2191,282"/>
<area shape="poly" id="edge52_Node000033_Node000036" title=" " alt="" coords="2086,191,2108,229,2103,227,2084,196"/>
<area shape="rect" id="Node000038" href="$reporting_8h.html" title=" " alt="" coords="3009,419,3148,459"/>
<area shape="poly" id="edge55_Node000033_Node000038" title=" " alt="" coords="2146,175,2451,197,2612,216,2677,227,2727,239,2820,275,2907,321,2984,368,3043,410,3037,409,2981,372,2905,326,2817,280,2726,244,2676,232,2611,221,2451,203,2146,181"/>
<area shape="rect" id="Node000042" href="$jacobian_8h.html" title="Wrapper for handling the network Jacobian matrix in GridFire. Currently uses Eigen&#39;s SparseMatrix." alt="" coords="2495,241,2633,282"/>
<area shape="poly" id="edge61_Node000033_Node000042" title=" " alt="" coords="2146,184,2482,246,2477,246,2145,190"/>
<area shape="rect" id="Node000043" title=" " alt="" coords="2429,330,2589,371"/>
<area shape="poly" id="edge82_Node000033_Node000043" title=" " alt="" coords="2145,177,2260,197,2322,215,2382,239,2411,256,2439,276,2484,320,2479,318,2435,280,2408,260,2380,244,2321,220,2259,202,2145,183"/>
<area shape="poly" id="edge69_Node000033_Node000047" title=" " alt="" coords="1998,188,1695,244,1694,239,2003,187"/>
<area shape="rect" id="Node000052" title=" " alt="" coords="1755,338,1829,363"/>
<area shape="poly" id="edge86_Node000033_Node000052" title=" " alt="" coords="2003,192,1947,216,1895,244,1847,284,1810,327,1808,322,1843,281,1892,239,1945,211,1998,194"/>
<area shape="rect" id="Node000053" title=" " alt="" coords="2316,249,2369,274"/>
<area shape="poly" id="edge85_Node000033_Node000053" title=" " alt="" coords="2146,191,2298,239,2304,243,2299,243,2296,244,2146,197"/>
<area shape="poly" id="edge46_Node000034_Node000030" title=" " alt="" coords="2848,452,2769,508,2767,503,2843,453"/>
<area shape="poly" id="edge45_Node000034_Node000031" title=" " alt="" coords="2868,450,2882,494,2877,491,2865,454"/>
<area shape="poly" id="edge48_Node000035_Node000021" title=" " alt="" coords="2231,369,2230,413,2226,409,2228,373"/>
<area shape="poly" id="edge49_Node000035_Node000024" title=" " alt="" coords="2261,369,2325,417,2372,461,2411,504,2406,502,2368,464,2322,421,2260,374"/>
<area shape="poly" id="edge51_Node000035_Node000028" title=" " alt="" coords="2201,370,2131,421,2027,507,2025,502,2127,417,2196,372"/>
<area shape="poly" id="edge50_Node000035_Node000030" title=" " alt="" coords="2288,369,2692,510,2686,509,2287,374"/>
<area shape="poly" id="edge53_Node000036_Node000035" title=" " alt="" coords="2150,280,2198,321,2192,319,2148,285"/>
<area shape="rect" id="Node000037" title=" " alt="" coords="1556,426,1625,452"/>
<area shape="poly" id="edge54_Node000036_Node000037" title=" " alt="" coords="2080,282,1971,327,1842,373,1734,405,1640,429,1639,423,1733,399,1840,368,1969,322,2075,283"/>
<area shape="poly" id="edge57_Node000038_Node000012" title=" " alt="" coords="3011,452,2947,462,2709,480,2507,491,2164,499,1821,500,1380,510,969,527,968,522,1380,505,1821,495,2164,494,2507,486,2708,475,2946,457,3006,452"/>
<area shape="poly" id="edge60_Node000038_Node000031" title=" " alt="" coords="3038,459,2947,503,2946,498,3033,460"/>
<area shape="rect" id="Node000039" title=" " alt="" coords="3074,515,3120,540"/>
<area shape="poly" id="edge56_Node000038_Node000039" title=" " alt="" coords="3084,458,3093,502,3089,498,3081,462"/>
<area shape="rect" id="Node000040" title=" " alt="" coords="3144,515,3213,540"/>
<area shape="poly" id="edge58_Node000038_Node000040" title=" " alt="" coords="3102,457,3156,506,3151,504,3100,462"/>
<area shape="rect" id="Node000041" title=" " alt="" coords="2982,515,3050,540"/>
<area shape="poly" id="edge59_Node000038_Node000041" title=" " alt="" coords="3067,459,3034,505,3032,500,3062,461"/>
<area shape="poly" id="edge66_Node000042_Node000007" title=" " alt="" coords="2521,282,2409,333,2407,328,2516,283"/>
<area shape="poly" id="edge62_Node000042_Node000024" title=" " alt="" coords="2580,280,2593,300,2603,323,2608,347,2604,372,2576,416,2540,455,2501,486,2466,509,2464,504,2498,481,2536,451,2572,413,2599,370,2603,347,2598,324,2589,302,2578,285"/>
<area shape="poly" id="edge64_Node000042_Node000026" title=" " alt="" coords="2633,270,2735,293,2778,309,2806,328,2812,339,2813,350,2806,372,2792,396,2774,419,2733,457,2688,488,2647,510,2646,505,2686,483,2729,453,2770,415,2787,393,2801,370,2808,349,2807,341,2802,332,2776,313,2734,298,2633,276"/>
<area shape="poly" id="edge67_Node000042_Node000027" title=" " alt="" coords="2497,270,2305,297,2212,314,2146,332,2070,372,2001,420,1942,467,1899,507,1897,502,1939,463,1998,415,2068,367,2144,328,2211,309,2304,292,2491,270"/>
<area shape="poly" id="edge63_Node000042_Node000043" title=" " alt="" coords="2554,281,2531,319,2528,315,2549,284"/>
<area shape="rect" id="Node000044" title=" " alt="" coords="2664,338,2791,363"/>
<area shape="poly" id="edge65_Node000042_Node000044" title=" " alt="" coords="2601,280,2694,330,2689,329,2600,285"/>
<area shape="poly" id="edge78_Node000047_Node000027" title=" " alt="" coords="1625,280,1693,328,1743,373,1789,421,1859,504,1854,502,1785,425,1739,377,1690,332,1623,285"/>
<area shape="poly" id="edge81_Node000047_Node000029" title=" " alt="" coords="1537,282,1504,304,1481,331,1476,350,1481,370,1492,399,1505,419,1545,457,1588,486,1635,509,1629,508,1586,490,1542,461,1501,422,1487,401,1476,371,1470,350,1476,329,1501,300,1532,284"/>
<area shape="poly" id="edge79_Node000047_Node000037" title=" " alt="" coords="1545,282,1515,304,1493,331,1487,350,1493,369,1516,397,1547,420,1542,418,1512,401,1488,372,1481,350,1488,329,1511,300,1540,284"/>
<area shape="rect" id="Node000048" href="$scratchpad__abstract_8h.html" title="Abstract base class for scratchpad memory used during engine computations." alt="" coords="1502,330,1679,371"/>
<area shape="poly" id="edge70_Node000047_Node000048" title=" " alt="" coords="1592,281,1592,316,1588,313,1589,285"/>
<area shape="rect" id="Node000049" href="$engine_2scratchpads_2types_8h.html" title="Type definitions and utilities for the scratchpad system." alt="" coords="1198,330,1375,371"/>
<area shape="poly" id="edge72_Node000047_Node000049" title=" " alt="" coords="1524,282,1370,328,1369,323,1518,283"/>
<area shape="rect" id="Node000050" href="$error__scratchpad_8h.html" title=" " alt="" coords="989,330,1122,371"/>
<area shape="poly" id="edge75_Node000047_Node000050" title=" " alt="" coords="1499,278,1138,338,1137,333,1504,277"/>
<area shape="poly" id="edge80_Node000047_Node000052" title=" " alt="" coords="1636,280,1752,331,1747,331,1636,285"/>
<area shape="poly" id="edge71_Node000048_Node000037" title=" " alt="" coords="1592,369,1592,413,1588,409,1589,373"/>
<area shape="poly" id="edge73_Node000049_Node000006" title=" " alt="" coords="1274,370,1242,416,1240,412,1270,372"/>
<area shape="poly" id="edge74_Node000049_Node000023" title=" " alt="" coords="1304,369,1418,504,1413,502,1302,373"/>
<area shape="poly" id="edge77_Node000050_Node000010" title=" " alt="" coords="986,362,610,421,609,416,991,361"/>
<area shape="poly" id="edge76_Node000050_Node000012" title=" " alt="" coords="1044,370,946,504,943,500,1039,372"/>
</map>