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fix(clang): fixed a few compiler warnings in clang

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This commit is contained in:
Emily Boudreaux
2025-11-28 09:53:54 -05:00
parent 21cabfdb66
commit 7a4ccff021
5 changed files with 5 additions and 40 deletions
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2
Doxyfile
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@@ -48,7 +48,7 @@ PROJECT_NAME = GridFire
# could be handy for archiving the generated documentation or if some version
# control system is used.
PROJECT_NUMBER = v0.7.1_rc2
PROJECT_NUMBER = v0.7.2_rc2
# Using the PROJECT_BRIEF tag one can provide an optional one line description
# for a project that appears at the top of each page and should give viewers a

2
meson.build
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@@ -18,7 +18,7 @@
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
# *********************************************************************** #
project('GridFire', ['c', 'cpp', 'fortran'], version: 'v0.7.1_rc2', default_options: ['cpp_std=c++23'], meson_version: '>=1.5.0')
project('GridFire', ['c', 'cpp', 'fortran'], version: 'v0.7.2_rc2', default_options: ['cpp_std=c++23'], meson_version: '>=1.5.0')
# Add default visibility for all C++ targets
add_project_arguments('-fvisibility=default', language: 'cpp')

2
pyproject.toml
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@@ -8,7 +8,7 @@ build-backend = "mesonpy"
[project]
name = "gridfire" # Choose your Python package name
version = "0.7.1_rc2" # Your project's version
version = "0.7.2_rc2" # Your project's version
description = "Python interface to the GridFire nuclear network code"
readme = "README.md"
license = { file = "LICENSE.txt" } # Reference your license file [cite: 2]

37
src/lib/engine/engine_graph.cpp
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@@ -813,42 +813,7 @@ namespace gridfire::engine {
// --- Generate Stoichiometry Matrix ---
void GraphEngine::generateStoichiometryMatrix() {
LOG_TRACE_L1(m_logger, "Generating stoichiometry matrix...");
// Task 1: Set dimensions and initialize the matrix
// size_t numSpecies = m_networkSpecies.size();
// size_t numReactions = m_reactions.size();
// m_stoichiometryMatrix.resize(numSpecies, numReactions, false);
LOG_TRACE_L1(m_logger, "Stoichiometry matrix initialized with dimensions: {} rows (species) x {} columns (reactions).",
numSpecies, numReactions);
// Task 2: Populate the stoichiometry matrix
// Iterate through all reactions, assign them a column index, and fill in their stoichiometric coefficients.
size_t reactionColumnIndex = 0;
for (const auto& reaction : m_reactions) {
// Get the net stoichiometry for the current reaction
std::unordered_map<fourdst::atomic::Species, int> netStoichiometry = reaction->stoichiometry();
// Iterate through the species and their coefficients in the stoichiometry map
for (const auto& [species, coefficient] : netStoichiometry) {
// Find the row index for this species
auto it = m_speciesToIndexMap.find(species);
if (it != m_speciesToIndexMap.end()) {
// const size_t speciesRowIndex = it->second;
// Set the matrix element. Boost.uBLAS handles sparse insertion.
// m_stoichiometryMatrix(speciesRowIndex, reactionColumnIndex) = coefficient;
} else {
// This scenario should ideally not happen if m_networkSpeciesMap and m_speciesToIndexMap are correctly synced
LOG_ERROR(m_logger, "CRITICAL ERROR: Species '{}' from reaction '{}' stoichiometry not found in species to index map.",
species.name(), reaction->id());
m_logger -> flush_log();
throw std::runtime_error("Species not found in species to index map: " + std::string(species.name()));
}
}
reactionColumnIndex++; // Move to the next column for the next reaction
}
return; // Deprecated
}
void GraphEngine::setScreeningModel(const screening::ScreeningType model) {

2
src/python/gridfire/__init__.py
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@@ -16,5 +16,5 @@ sys.modules['gridfire.io'] = io
__all__ = ['type', 'utils', 'engine', 'solver', 'exceptions', 'partition', 'reaction', 'screening', 'io', 'policy']
__version__ = "v0.7.1_rc2"
__version__ = "v0.7.2_rc2"