tboudreaux/GridFire
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

docs(docs): rebuilt docs with loads more detail for triggers and weak reactions

Browse Source
This commit is contained in:
Emily Boudreaux
2025-10-08 11:17:09 -04:00
parent 8a0b5b2c36
commit 274c566726
600 changed files with 39207 additions and 9125 deletions
Download Patch File Download Diff File Expand all files Collapse all files

54
docs/html/search/functions_10.js
View File

@@ -1,34 +1,26 @@
var searchData=
[
['rate_5ffit_0',['rate_fit',['../namespacegridfire_1_1approx8.html#aed8175751b4920a53922f87f8c0e63c4',1,'gridfire::approx8']]],
['ratecoefficients_1',['rateCoefficients',['../classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e',1,'gridfire::reaction::Reaction::rateCoefficients()'],['../classgridfire_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e',1,'gridfire::Reaction::rateCoefficients()']]],
['rauscherthielemannpartitionfunction_2',['RauscherThielemannPartitionFunction',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
['reactant_5fspecies_3',['reactant_species',['../classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923',1,'gridfire::reaction::Reaction::reactant_species()'],['../classgridfire_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923',1,'gridfire::Reaction::reactant_species()']]],
['reactants_4',['reactants',['../classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b',1,'gridfire::reaction::Reaction::reactants()'],['../classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b',1,'gridfire::Reaction::reactants()']]],
['reaction_5',['Reaction',['../classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c',1,'gridfire::reaction::Reaction::Reaction()'],['../classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c',1,'gridfire::Reaction::Reaction()']]],
['rebuild_6',['rebuild',['../classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf',1,'gridfire::DynamicEngine::rebuild()'],['../classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490',1,'gridfire::GraphEngine::rebuild()'],['../class_py_dynamic_engine.html#a3d30a9116825ab2c5c209bc2712126bc',1,'PyDynamicEngine::rebuild()']]],
['recordadtape_7',['recordADTape',['../classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889',1,'gridfire::GraphEngine']]],
['register_5fbase_5fengine_5fbindings_8',['register_base_engine_bindings',['../engine_2bindings_8cpp.html#a884aac3c3f2e8c62843c69329052d642',1,'register_base_engine_bindings(pybind11::module &m): bindings.cpp'],['../engine_2bindings_8h.html#a884aac3c3f2e8c62843c69329052d642',1,'register_base_engine_bindings(pybind11::module &m): bindings.cpp']]],
['register_5fcomposite_5fpartition_5fbindings_9',['register_composite_partition_bindings',['../partition_2bindings_8cpp.html#afded1a99d32cbf8745a42e0a81891e18',1,'register_composite_partition_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#afded1a99d32cbf8745a42e0a81891e18',1,'register_composite_partition_bindings(pybind11::module &m): bindings.cpp']]],
['register_5fengine_5fbindings_10',['register_engine_bindings',['../engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c',1,'register_engine_bindings(py::module &m): bindings.cpp'],['../engine_2bindings_8h.html#a73a2ec4150b3954550f16b97102ec993',1,'register_engine_bindings(pybind11::module &m): bindings.h']]],
['register_5fengine_5fview_5fbindings_11',['register_engine_view_bindings',['../engine_2bindings_8cpp.html#a74a027923ac27f235cf565f8d2a355bd',1,'register_engine_view_bindings(pybind11::module &m): bindings.cpp'],['../engine_2bindings_8h.html#a74a027923ac27f235cf565f8d2a355bd',1,'register_engine_view_bindings(pybind11::module &m): bindings.cpp']]],
['register_5fexception_5fbindings_12',['register_exception_bindings',['../exceptions_2bindings_8cpp.html#a15a0d54e4fe015a87d9f7a63284c2958',1,'register_exception_bindings(py::module &m): bindings.cpp'],['../exceptions_2bindings_8h.html#a01725278af607be0d8f5a2d892a5ef73',1,'register_exception_bindings(pybind11::module &m): bindings.h']]],
['register_5fexpectation_5fbindings_13',['register_expectation_bindings',['../expectations_2bindings_8cpp.html#ac6720822f6ad76636adbc1ae6febc2c2',1,'register_expectation_bindings(py::module &m): bindings.cpp'],['../expectations_2bindings_8h.html#a12e0304a6d29af179118a29c8ea93dc0',1,'register_expectation_bindings(pybind11::module &m): bindings.h']]],
['register_5fground_5fstate_5fpartition_5fbindings_14',['register_ground_state_partition_bindings',['../partition_2bindings_8cpp.html#ac36d0a5e8cb0122888fd218a143c7630',1,'register_ground_state_partition_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#ac36d0a5e8cb0122888fd218a143c7630',1,'register_ground_state_partition_bindings(pybind11::module &m): bindings.cpp']]],
['register_5fio_5fbindings_15',['register_io_bindings',['../io_2bindings_8cpp.html#a7f552627cbe94906e0ee98b121e77862',1,'register_io_bindings(py::module &m): bindings.cpp'],['../io_2bindings_8h.html#a1d91b8298302b9f5401bf06c22651df4',1,'register_io_bindings(pybind11::module &m): bindings.h']]],
['register_5fpartition_5fbindings_16',['register_partition_bindings',['../partition_2bindings_8cpp.html#a2806baaec82e0e6d66b80348584e08fd',1,'register_partition_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#a2806baaec82e0e6d66b80348584e08fd',1,'register_partition_bindings(pybind11::module &m): bindings.cpp']]],
['register_5fpartition_5ftypes_5fbindings_17',['register_partition_types_bindings',['../partition_2bindings_8cpp.html#a4c0db94b56a3b02482ac4fd654680cca',1,'register_partition_types_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#a4c0db94b56a3b02482ac4fd654680cca',1,'register_partition_types_bindings(pybind11::module &m): bindings.cpp']]],
['register_5frauscher_5fthielemann_5fpartition_5fbindings_18',['register_rauscher_thielemann_partition_bindings',['../partition_2bindings_8cpp.html#a4e56b30b36165067cf413787a55b9ecb',1,'register_rauscher_thielemann_partition_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#a4e56b30b36165067cf413787a55b9ecb',1,'register_rauscher_thielemann_partition_bindings(pybind11::module &m): bindings.cpp']]],
['register_5frauscher_5fthielemann_5fpartition_5fdata_5frecord_5fbindings_19',['register_rauscher_thielemann_partition_data_record_bindings',['../partition_2bindings_8cpp.html#ae405682b0e35624397583048f4d40f75',1,'register_rauscher_thielemann_partition_data_record_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#ae405682b0e35624397583048f4d40f75',1,'register_rauscher_thielemann_partition_data_record_bindings(pybind11::module &m): bindings.cpp']]],
['register_5freaction_5fbindings_20',['register_reaction_bindings',['../reaction_2bindings_8cpp.html#ae174b115814ec42920a799881cef1efa',1,'register_reaction_bindings(py::module &m): bindings.cpp'],['../reaction_2bindings_8h.html#a221d509fd54278898e2cbb73663f53d0',1,'register_reaction_bindings(pybind11::module &m): bindings.h']]],
['register_5fscreening_5fbindings_21',['register_screening_bindings',['../screening_2bindings_8cpp.html#a4fcef69d9382bfbc315cb061038627f4',1,'register_screening_bindings(py::module &m): bindings.cpp'],['../screening_2bindings_8h.html#a9e1a938ffee0a1b9d913fa4968865b1b',1,'register_screening_bindings(pybind11::module &m): bindings.h']]],
['register_5fsolver_5fbindings_22',['register_solver_bindings',['../solver_2bindings_8cpp.html#a722d28831d82cd075081fcf4b403479d',1,'register_solver_bindings(const py::module &m): bindings.cpp'],['../solver_2bindings_8h.html#a7ff40d9e08fcb5028e914045447d46d3',1,'register_solver_bindings(const pybind11::module &m): bindings.h']]],
['register_5ftype_5fbindings_23',['register_type_bindings',['../types_2bindings_8cpp.html#a37d2e0b6a2605d063eec5e2a64e9bcc5',1,'register_type_bindings(pybind11::module &m): bindings.cpp'],['../types_2bindings_8h.html#a37d2e0b6a2605d063eec5e2a64e9bcc5',1,'register_type_bindings(pybind11::module &m): bindings.cpp']]],
['register_5futils_5fbindings_24',['register_utils_bindings',['../utils_2bindings_8cpp.html#a7af842f50ca4a721518e716d0229697c',1,'register_utils_bindings(py::module &m): bindings.cpp'],['../utils_2bindings_8h.html#a9eefca377142320755a869fafc6311c7',1,'register_utils_bindings(pybind11::module &m): bindings.h']]],
['remove_5freaction_25',['remove_reaction',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a89c4c5af12aef7fbfc24316c88237e22',1,'gridfire::reaction::TemplatedReactionSet']]],
['rescueedgespeciesdestructionchannel_26',['rescueEdgeSpeciesDestructionChannel',['../classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f',1,'gridfire::AdaptiveEngineView']]],
['reservejacobianmatrix_27',['reserveJacobianMatrix',['../classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5',1,'gridfire::GraphEngine']]],
['rev_5fsparse_5fjac_28',['rev_sparse_jac',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4',1,'gridfire::GraphEngine::AtomicReverseRate']]],
['reverse_29',['reverse',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e',1,'gridfire::GraphEngine::AtomicReverseRate']]],
['rhsmanager_30',['RHSManager',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a4ba187f1a0deca0a82ac3c9a14883855',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]]
['selectpartitionfunction_0',['selectPartitionFunction',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b',1,'gridfire::partition::CompositePartitionFunction']]],
['selectscreeningmodel_1',['selectScreeningModel',['../namespacegridfire_1_1screening.html#a6ca8556d27ac373e176f5b23437c416e',1,'gridfire::screening']]],
['set_5fcallback_2',['set_callback',['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a4d97ee85933d5e5f90d4194bb021a1dc',1,'gridfire::solver::NetworkSolverStrategy::set_callback()'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a77638ef3d2279009e5a57bbd3f0eb63b',1,'gridfire::solver::CVODESolverStrategy::set_callback()'],['../class_py_dynamic_network_solver_strategy.html#a112a7babc03858a69d6994a7155370d3',1,'PyDynamicNetworkSolverStrategy::set_callback()']]],
['set_5fstdout_5flogging_5fenabled_3',['set_stdout_logging_enabled',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a46dacb6eb075f2aadac0e56972deeaa3',1,'gridfire::solver::CVODESolverStrategy']]],
['setformat_4',['setFormat',['../classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4',1,'gridfire::Network']]],
['setnetworkreactions_5',['setNetworkReactions',['../classgridfire_1_1_dynamic_engine.html#a49025489901e22a20cdf99b455ff2ff0',1,'gridfire::DynamicEngine::setNetworkReactions()'],['../classgridfire_1_1_graph_engine.html#a52288e2629609c8438a3c9bc3f910016',1,'gridfire::GraphEngine::setNetworkReactions()'],['../classgridfire_1_1_adaptive_engine_view.html#adedc8547568d643473bdfcc86040b488',1,'gridfire::AdaptiveEngineView::setNetworkReactions()'],['../classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9',1,'gridfire::DefinedEngineView::setNetworkReactions()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#af99f5e4871808188d00379c1c35868fe',1,'gridfire::MultiscalePartitioningEngineView::setNetworkReactions()'],['../class_py_dynamic_engine.html#af469cba3be850d53f659ec173f0eb4e4',1,'PyDynamicEngine::setNetworkReactions()']]],
['setprecomputation_6',['setPrecomputation',['../classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1',1,'gridfire::GraphEngine']]],
['setscreeningmodel_7',['setScreeningModel',['../classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd',1,'gridfire::DynamicEngine::setScreeningModel()'],['../classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c',1,'gridfire::GraphEngine::setScreeningModel()'],['../classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b',1,'gridfire::AdaptiveEngineView::setScreeningModel()'],['../classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258',1,'gridfire::DefinedEngineView::setScreeningModel()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f',1,'gridfire::MultiscalePartitioningEngineView::setScreeningModel()'],['../class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac',1,'PyDynamicEngine::setScreeningModel()']]],
['setstiff_8',['setStiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#aefed972081514c29cdaaa1efd857ad8d',1,'gridfire::approx8::Approx8Network::setStiff()'],['../classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe',1,'gridfire::Network::setStiff()']]],
['setusereversereactions_9',['setUseReverseReactions',['../classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197',1,'gridfire::GraphEngine']]],
['simplereactionlistfileparser_10',['SimpleReactionListFileParser',['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993',1,'gridfire::io::SimpleReactionListFileParser']]],
['simulationtimetrigger_11',['SimulationTimeTrigger',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a235f84a37370a1ca2226fb881b4051c7',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger']]],
['size_12',['size',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a4c58951d9f7ab252717c226b0da80a9d',1,'gridfire::reaction::LogicalReaclibReaction::size()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf',1,'gridfire::reaction::ReactionSet::size()'],['../classgridfire_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf',1,'gridfire::ReactionSet::size()']]],
['solveqseabundances_13',['solveQSEAbundances',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a40ce2c18063cd56cffd58419b9ae96bf',1,'gridfire::MultiscalePartitioningEngineView']]],
['sourcelabel_14',['sourceLabel',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a96d4ab87de02e9b0be3c248e2e955b4b',1,'gridfire::reaction::ReaclibReaction']]],
['sources_15',['sources',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad4979f437dc787a5475c3a029804ed99',1,'gridfire::reaction::LogicalReaclibReaction']]],
['staleengineerror_16',['StaleEngineError',['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50',1,'gridfire::exceptions::StaleEngineError::StaleEngineError()'],['../structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10',1,'gridfire::expectations::StaleEngineError::StaleEngineError()']]],
['staleenginetrigger_17',['StaleEngineTrigger',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d',1,'gridfire::exceptions::StaleEngineTrigger']]],
['stepderivatives_18',['StepDerivatives',['../structgridfire_1_1_step_derivatives.html#a26deeb236e77eddb0119ad368a5d8f1c',1,'gridfire::StepDerivatives']]],
['stoichiometry_19',['stoichiometry',['../classgridfire_1_1reaction_1_1_reaction.html#ad49f4cad024db72c966d949c75f1ce4d',1,'gridfire::reaction::Reaction::stoichiometry() const =0'],['../classgridfire_1_1reaction_1_1_reaction.html#ab7888b57507d6d27de6e5fcaea40fff5',1,'gridfire::reaction::Reaction::stoichiometry(const fourdst::atomic::Species &species) const =0'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a57b2695d152360a6ba08776cc760e3a1',1,'gridfire::reaction::ReaclibReaction::stoichiometry(const fourdst::atomic::Species &species) const override'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0f629cbfe95dc5643b5e3724be0db2f9',1,'gridfire::reaction::ReaclibReaction::stoichiometry() const override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a8bf7dc26d9f1375625df99bceba08a44',1,'gridfire::rates::weak::WeakReaction::stoichiometry() const override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1f4acfdb39bb861aaee9f3f28cfc406e',1,'gridfire::rates::weak::WeakReaction::stoichiometry(const fourdst::atomic::Species &species) const override'],['../classgridfire_1_1_reaction.html#a55b7f61d9bde45f2ca485c1b07a05950',1,'gridfire::Reaction::stoichiometry() const=0'],['../classgridfire_1_1_reaction.html#af0a893603aa88f7d7d205b9b969af487',1,'gridfire::Reaction::stoichiometry(const fourdst::atomic::Species &species) const=0']]],
['sum_5fproduct_20',['sum_product',['../namespacegridfire_1_1approx8.html#aafd24448743672021dd4507316060817',1,'gridfire::approx8']]],
['supports_21',['supports',['../classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c',1,'gridfire::partition::CompositePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5',1,'gridfire::partition::PartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd',1,'gridfire::partition::GroundStatePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5',1,'gridfire::partition::RauscherThielemannPartitionFunction::supports()'],['../class_py_partition_function.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8',1,'PyPartitionFunction::supports()']]],
['syncinternalmaps_22',['syncInternalMaps',['../classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f',1,'gridfire::GraphEngine']]]
];