From 274c566726b994f66890c8e3beaa3045624bba6d Mon Sep 17 00:00:00 2001
From: Emily Boudreaux <thomas@boudreauxmail.com>
Date: Wed, 8 Oct 2025 11:17:09 -0400
Subject: [PATCH] docs(docs): rebuilt docs with loads more detail for triggers
 and weak reactions

---
 .../_c_v_o_d_e__solver__strategy_8cpp.html    |  141 ++
 .../html/_c_v_o_d_e__solver__strategy_8h.html |  155 ++
 docs/html/_c_v_o_d_e__solver__strategy_8h.js  |    6 +
 docs/html/annotated.html                      |  177 +-
 docs/html/annotated_dup.js                    |   48 +-
 docs/html/bindings_8cpp.html                  |    1 -
 .../html/class_py_dynamic_engine-members.html |   51 +-
 docs/html/class_py_dynamic_engine.html        |  174 +-
 docs/html/class_py_dynamic_engine.js          |    6 +-
 ...ss_py_dynamic_network_solver_strategy.html |    2 +-
 docs/html/class_py_engine-members.html        |    9 +-
 docs/html/class_py_engine.html                |   20 +-
 docs/html/class_py_partition_function.html    |   12 +-
 docs/html/class_py_screening-members.html     |    4 +-
 docs/html/class_py_screening.html             |   44 +-
 docs/html/class_py_screening.js               |    4 +-
 ...class_solver_plugin_interface-members.html |  119 +
 docs/html/class_solver_plugin_interface.html  |  193 ++
 docs/html/class_solver_plugin_interface.js    |    5 +
 docs/html/class_solver_plugin_interface.png   |  Bin 0 -> 707 bytes
 docs/html/classes.html                        |   30 +-
 ...fire_1_1_adaptive_engine_view-members.html |   95 +-
 ...lassgridfire_1_1_adaptive_engine_view.html |  311 +--
 .../classgridfire_1_1_adaptive_engine_view.js |   33 +-
 ...dfire_1_1_defined_engine_view-members.html |   81 +-
 ...classgridfire_1_1_defined_engine_view.html |  271 ++-
 .../classgridfire_1_1_defined_engine_view.js  |   23 +-
 ...ssgridfire_1_1_dynamic_engine-members.html |   45 +-
 .../classgridfire_1_1_dynamic_engine.html     |  217 +-
 docs/html/classgridfire_1_1_dynamic_engine.js |   21 +-
 .../classgridfire_1_1_engine-members.html     |    2 +-
 docs/html/classgridfire_1_1_engine.html       |   18 +-
 docs/html/classgridfire_1_1_engine.js         |    2 +-
 docs/html/classgridfire_1_1_engine_view.html  |    2 +-
 ..._1_1_file_defined_engine_view-members.html |   97 +-
 ...gridfire_1_1_file_defined_engine_view.html |   67 +-
 ...lassgridfire_1_1_graph_engine-members.html |  135 +-
 docs/html/classgridfire_1_1_graph_engine.html |  639 +++---
 docs/html/classgridfire_1_1_graph_engine.js   |   53 +-
 ...cale_partitioning_engine_view-members.html |   75 +-
 ...1_multiscale_partitioning_engine_view.html |  683 +++---
 ...1_1_multiscale_partitioning_engine_view.js |   45 +-
 docs/html/classgridfire_1_1_network.html      |    2 +-
 ...1_network_priming_engine_view-members.html |   89 +-
 ...dfire_1_1_network_priming_engine_view.html |   65 +-
 .../classgridfire_1_1_reaction-members.html   |   63 +-
 docs/html/classgridfire_1_1_reaction.html     | 1926 +++++++---------
 docs/html/classgridfire_1_1_reaction.js       |   61 +-
 docs/html/classgridfire_1_1_reaction.png      |  Bin 724 -> 1626 bytes
 ...lassgridfire_1_1_reaction_set-members.html |  147 ++
 docs/html/classgridfire_1_1_reaction_set.html | 1050 +++++++++
 docs/html/classgridfire_1_1_reaction_set.js   |   33 +
 ...1_1io_1_1_m_e_s_a_network_file_parser.html |    2 +-
 ..._1_1_simple_reaction_list_file_parser.html |    6 +-
 ...tion_1_1_composite_partition_function.html |    2 +-
 ...ound_state_partition_function-members.html |    2 +-
 ...n_1_1_ground_state_partition_function.html |   24 +-
 ...ion_1_1_ground_state_partition_function.js |    2 +-
 ...auscher_thielemann_partition_function.html |   12 +-
 ...ak_1_1_weak_rate_interpolator-members.html |  124 ++
 ...es_1_1weak_1_1_weak_rate_interpolator.html |  441 ++++
 ...ates_1_1weak_1_1_weak_rate_interpolator.js |   10 +
 ...tes_1_1weak_1_1_weak_reaction-members.html |  156 ++
 ...re_1_1rates_1_1weak_1_1_weak_reaction.html | 1567 +++++++++++++
 ...fire_1_1rates_1_1weak_1_1_weak_reaction.js |   43 +
 ...ire_1_1rates_1_1weak_1_1_weak_reaction.png |  Bin 0 -> 799 bytes
 ...reaction_1_1_atomic_weak_rate-members.html |  126 ++
 ..._1_weak_reaction_1_1_atomic_weak_rate.html |  475 ++++
 ..._1_1_weak_reaction_1_1_atomic_weak_rate.js |   12 +
 ...1_1_weak_reaction_1_1_atomic_weak_rate.png |  Bin 0 -> 1043 bytes
 ...1_1weak_1_1_weak_reaction_map-members.html |  123 +
 ..._1rates_1_1weak_1_1_weak_reaction_map.html |  342 +++
 ..._1_1rates_1_1weak_1_1_weak_reaction_map.js |    9 +
 ..._1_1_logical_reaclib_reaction-members.html |  171 ++
 ...reaction_1_1_logical_reaclib_reaction.html |  936 ++++++++
 ..._1reaction_1_1_logical_reaclib_reaction.js |   20 +
 ...1reaction_1_1_logical_reaclib_reaction.png |  Bin 0 -> 1175 bytes
 ...reaction_1_1_reaclib_reaction-members.html |  161 ++
 ...fire_1_1reaction_1_1_reaclib_reaction.html | 1631 ++++++++++++++
 ...idfire_1_1reaction_1_1_reaclib_reaction.js |   44 +
 ...dfire_1_1reaction_1_1_reaclib_reaction.png |  Bin 0 -> 1181 bytes
 ...fire_1_1reaction_1_1_reaction-members.html |   63 +-
 ...lassgridfire_1_1reaction_1_1_reaction.html | 1976 +++++++----------
 .../classgridfire_1_1reaction_1_1_reaction.js |   61 +-
 ...classgridfire_1_1reaction_1_1_reaction.png |  Bin 778 -> 1678 bytes
 ..._1_1reaction_1_1_reaction_set-members.html |   52 +-
 ...gridfire_1_1reaction_1_1_reaction_set.html |  354 +--
 ...ssgridfire_1_1reaction_1_1_reaction_set.js |   18 +-
 ...ning_1_1_bare_screening_model-members.html |    6 +-
 ...1_1screening_1_1_bare_screening_model.html |   71 +-
 ...e_1_1screening_1_1_bare_screening_model.js |    6 +-
 ..._intermediate_screening_model-members.html |  122 +
 ...ning_1_1_intermediate_screening_model.html |  344 +++
 ...eening_1_1_intermediate_screening_model.js |    6 +
 ...ening_1_1_intermediate_screening_model.png |  Bin 0 -> 1039 bytes
 ...screening_1_1_screening_model-members.html |    4 +-
 ...fire_1_1screening_1_1_screening_model.html |   53 +-
 ...idfire_1_1screening_1_1_screening_model.js |    4 +-
 ...dfire_1_1screening_1_1_screening_model.png |  Bin 1463 -> 2140 bytes
 ...ning_1_1_weak_screening_model-members.html |    6 +-
 ...1_1screening_1_1_weak_screening_model.html |   66 +-
 ...e_1_1screening_1_1_weak_screening_model.js |    6 +-
 ...1_1_c_v_o_d_e_solver_strategy-members.html |  153 ++
 ...1solver_1_1_c_v_o_d_e_solver_strategy.html | 1206 ++++++++++
 ...1_1solver_1_1_c_v_o_d_e_solver_strategy.js |   35 +
 ..._1solver_1_1_c_v_o_d_e_solver_strategy.png |  Bin 0 -> 1239 bytes
 ...1_1solver_1_1_network_solver_strategy.html |    8 +-
 ...re_1_1trigger_1_1_and_trigger-members.html |  134 ++
 ...ssgridfire_1_1trigger_1_1_and_trigger.html |  645 ++++++
 ...lassgridfire_1_1trigger_1_1_and_trigger.js |   19 +
 ...assgridfire_1_1trigger_1_1_and_trigger.png |  Bin 0 -> 1791 bytes
 ...trigger_1_1_every_nth_trigger-members.html |  135 ++
 ...fire_1_1trigger_1_1_every_nth_trigger.html |  697 ++++++
 ...idfire_1_1trigger_1_1_every_nth_trigger.js |   20 +
 ...dfire_1_1trigger_1_1_every_nth_trigger.png |  Bin 0 -> 1853 bytes
 ..._1trigger_1_1_logical_trigger-members.html |  126 ++
 ...idfire_1_1trigger_1_1_logical_trigger.html |  167 ++
 ...ridfire_1_1trigger_1_1_logical_trigger.png |  Bin 0 -> 3350 bytes
 ...re_1_1trigger_1_1_not_trigger-members.html |  133 ++
 ...ssgridfire_1_1trigger_1_1_not_trigger.html |  635 ++++++
 ...lassgridfire_1_1trigger_1_1_not_trigger.js |   18 +
 ...assgridfire_1_1trigger_1_1_not_trigger.png |  Bin 0 -> 1784 bytes
 ...ire_1_1trigger_1_1_or_trigger-members.html |  134 ++
 ...assgridfire_1_1trigger_1_1_or_trigger.html |  657 ++++++
 ...classgridfire_1_1trigger_1_1_or_trigger.js |   19 +
 ...lassgridfire_1_1trigger_1_1_or_trigger.png |  Bin 0 -> 1776 bytes
 ...idfire_1_1trigger_1_1_trigger-members.html |  126 ++
 .../classgridfire_1_1trigger_1_1_trigger.html |  487 ++++
 .../classgridfire_1_1trigger_1_1_trigger.js   |   12 +
 .../classgridfire_1_1trigger_1_1_trigger.png  |  Bin 0 -> 3355 bytes
 ..._d_e_1_1_off_diagonal_trigger-members.html |  133 ++
 ..._1_c_v_o_d_e_1_1_off_diagonal_trigger.html |  635 ++++++
 ..._1_1_c_v_o_d_e_1_1_off_diagonal_trigger.js |   18 +
 ...1_1_c_v_o_d_e_1_1_off_diagonal_trigger.png |  Bin 0 -> 1473 bytes
 ...e_1_1_simulation_time_trigger-members.html |  135 ++
 ...c_v_o_d_e_1_1_simulation_time_trigger.html |  689 ++++++
 ...1_c_v_o_d_e_1_1_simulation_time_trigger.js |   20 +
 ..._c_v_o_d_e_1_1_simulation_time_trigger.png |  Bin 0 -> 1494 bytes
 ...1_1_timestep_collapse_trigger-members.html |  137 ++
 ...v_o_d_e_1_1_timestep_collapse_trigger.html |  779 +++++++
 ...c_v_o_d_e_1_1_timestep_collapse_trigger.js |   22 +
 ..._v_o_d_e_1_1_timestep_collapse_trigger.png |  Bin 0 -> 1510 bytes
 ...sgridfire_1_1utils_1_1_column-members.html |  124 ++
 .../classgridfire_1_1utils_1_1_column.html    |  324 +++
 .../html/classgridfire_1_1utils_1_1_column.js |    9 +
 .../classgridfire_1_1utils_1_1_column.png     |  Bin 0 -> 738 bytes
 ...fire_1_1utils_1_1_column_base-members.html |  121 +
 ...lassgridfire_1_1utils_1_1_column_base.html |  252 +++
 .../classgridfire_1_1utils_1_1_column_base.js |    7 +
 ...classgridfire_1_1utils_1_1_column_base.png |  Bin 0 -> 743 bytes
 ...002200160012126_1_1_is_dynamic_engine.html |    2 +-
 docs/html/construction_8cpp.html              |   20 +-
 docs/html/construction_8cpp.js                |    5 +-
 docs/html/construction_8h.html                |    7 +-
 docs/html/construction_8h.js                  |    2 +-
 .../dir_230a420a279f78b45ea47b2d650bf1a7.html |  126 ++
 .../dir_230a420a279f78b45ea47b2d650bf1a7.js   |    5 +
 .../dir_3626e0c0e3c5d7812d6b277dfa4ec364.html |    4 +
 .../dir_3626e0c0e3c5d7812d6b277dfa4ec364.js   |    2 +
 .../dir_3c6e26120bd25666a475751afc8a34bc.html |  122 +
 .../dir_3c6e26120bd25666a475751afc8a34bc.js   |    4 +
 .../dir_3cc0b3e3c66436f74054a789a4a47fbc.html |    2 +
 .../dir_3cc0b3e3c66436f74054a789a4a47fbc.js   |    1 +
 .../dir_4fd0dc9a50f7a53e22cb356c650f915e.html |    6 +-
 .../dir_4fd0dc9a50f7a53e22cb356c650f915e.js   |    2 +-
 .../dir_67aa14af464fbd247881f6980be7deb5.html |  128 ++
 .../dir_67aa14af464fbd247881f6980be7deb5.js   |    7 +
 .../dir_6ccae78e9032a1b4db4873aea5f3b43d.html |  132 ++
 .../dir_6ccae78e9032a1b4db4873aea5f3b43d.js   |    7 +
 .../dir_897cfbcdbf2b76d535de4ec754728fa0.html |  121 +
 .../dir_897cfbcdbf2b76d535de4ec754728fa0.js   |    4 +
 .../dir_8e34b6fea5a3d13256b367f27bc2135d.html |    2 +
 .../dir_8e34b6fea5a3d13256b367f27bc2135d.js   |    3 +-
 .../dir_902e06e9d82d80b06df7be6e417fa9ee.html |    5 +
 .../dir_902e06e9d82d80b06df7be6e417fa9ee.js   |    1 +
 .../dir_ab918a70d5de27403bd1202d71acc71b.html |  121 +
 .../dir_ab918a70d5de27403bd1202d71acc71b.js   |    4 +
 .../dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html |    2 +
 .../dir_ad59de2d6f32552fa0ecb4acca2fbb0b.js   |    1 +
 .../dir_aff155d61c3b73b9ab7dcdc908c4d49e.html |    2 +
 .../dir_aff155d61c3b73b9ab7dcdc908c4d49e.js   |    1 +
 .../dir_b0553efdd4ad7f265c0580564941af0c.html |  126 ++
 .../dir_b0553efdd4ad7f265c0580564941af0c.js   |    5 +
 .../dir_b893969db6254951682857c720518fa8.html |  121 +
 .../dir_b893969db6254951682857c720518fa8.js   |    4 +
 .../dir_c99e86cd0291aa23d2204e664fe571c1.html |  121 +
 .../dir_c99e86cd0291aa23d2204e664fe571c1.js   |    4 +
 .../dir_d2ba15782ddae84c3d0c5f0e63bda236.html |  121 +
 .../dir_d2ba15782ddae84c3d0c5f0e63bda236.js   |    4 +
 .../dir_da65b9a371696ae0281f77edf1c03876.html |  123 +
 .../dir_da65b9a371696ae0281f77edf1c03876.js   |    5 +
 .../dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html |    5 +
 .../dir_e2a8863ee8e7cd9122c04bdba1c35a3b.js   |    1 +
 .../dir_e87948a39c0c6c3f66d9f5f967ab86bd.js   |    2 +-
 .../dir_f2d7b0c77cb2532170ac94ead6e4ba70.html |    5 +
 .../dir_f2d7b0c77cb2532170ac94ead6e4ba70.js   |    1 +
 .../dir_f4383b1846ef599868e873d917f1344c.html |  121 +
 .../dir_f4383b1846ef599868e873d917f1344c.js   |    4 +
 docs/html/doxygen_crawl.html                  | 1097 ++++++---
 .../dynamic__engine__diagnostics_8cpp.html    |  142 ++
 .../html/dynamic__engine__diagnostics_8cpp.js |    6 +
 .../html/dynamic__engine__diagnostics_8h.html |  138 ++
 docs/html/dynamic__engine__diagnostics_8h.js  |    6 +
 docs/html/engine_2bindings_8cpp.html          |   51 +-
 docs/html/engine_2bindings_8cpp.js            |   10 +-
 docs/html/engine_2bindings_8h.html            |   50 +-
 docs/html/engine_2bindings_8h.js              |   10 +-
 docs/html/engine_8h.html                      |    8 +-
 docs/html/engine__abstract_8h.html            |    2 +
 docs/html/engine__abstract_8h.js              |    1 +
 docs/html/engine__adaptive_8h.html            |    1 -
 docs/html/engine__graph_8cpp.html             |    1 -
 docs/html/engine__graph_8h.html               |    4 +-
 docs/html/engine__multiscale_8cpp.html        |   11 +-
 docs/html/engine__multiscale_8h.html          |    3 -
 .../engine__partitioning__trigger_8cpp.html   |  144 ++
 .../engine__partitioning__trigger_8cpp.js     |    4 +
 .../engine__partitioning__trigger_8h.html     |  173 ++
 docs/html/engine__partitioning__trigger_8h.js |    7 +
 docs/html/engine__priming_8cpp.html           |    4 -
 docs/html/engine__priming_8h.html             |    2 -
 docs/html/error__engine_8h.html               |    2 +-
 docs/html/exceptions_2bindings_8cpp.html      |   13 +-
 docs/html/exceptions_2bindings_8cpp.js        |    2 +-
 docs/html/exceptions_2bindings_8h.html        |   10 +-
 docs/html/exceptions_2bindings_8h.js          |    2 +-
 docs/html/expectations_2bindings_8cpp.html    |   10 +-
 docs/html/expectations_2bindings_8cpp.js      |    2 +-
 docs/html/expectations_2bindings_8h.html      |   10 +-
 docs/html/expectations_2bindings_8h.js        |    2 +-
 docs/html/expected__engine_8h.html            |    1 +
 docs/html/files.html                          |  168 +-
 docs/html/functions.html                      |   16 +-
 docs/html/functions_b.html                    |    5 +-
 docs/html/functions_c.html                    |   58 +-
 docs/html/functions_d.html                    |   19 +-
 docs/html/functions_e.html                    |   22 +-
 docs/html/functions_f.html                    |    6 +-
 docs/html/functions_func.html                 |    9 +-
 docs/html/functions_func.js                   |    1 -
 docs/html/functions_func_b.html               |    4 +-
 docs/html/functions_func_c.html               |   52 +-
 docs/html/functions_func_d.html               |    4 +-
 docs/html/functions_func_e.html               |   15 +-
 docs/html/functions_func_f.html               |    6 +-
 docs/html/functions_func_g.html               |   29 +-
 docs/html/functions_func_h.html               |    2 +-
 docs/html/functions_func_i.html               |    9 +-
 docs/html/functions_func_l.html               |    4 +-
 docs/html/functions_func_m.html               |    2 +-
 docs/html/functions_func_n.html               |    6 +-
 docs/html/functions_func_o.html               |   13 +-
 docs/html/functions_func_p.html               |   11 +-
 docs/html/functions_func_q.html               |    2 +-
 docs/html/functions_func_r.html               |   22 +-
 docs/html/functions_func_s.html               |   17 +-
 docs/html/functions_func_t.html               |    7 +-
 docs/html/functions_func_u.html               |    2 +-
 docs/html/functions_func_v.html               |    4 +-
 docs/html/functions_func_w.html               |    4 +
 docs/html/functions_func_~.html               |   10 +
 docs/html/functions_g.html                    |   29 +-
 docs/html/functions_h.html                    |    2 +-
 docs/html/functions_i.html                    |    9 +-
 docs/html/functions_j.html                    |    1 -
 docs/html/functions_l.html                    |   17 +-
 docs/html/functions_m.html                    |  107 +-
 docs/html/functions_n.html                    |   12 +-
 docs/html/functions_o.html                    |   15 +-
 docs/html/functions_p.html                    |   13 +-
 docs/html/functions_q.html                    |    3 +-
 docs/html/functions_r.html                    |   30 +-
 docs/html/functions_rela.html                 |    2 +-
 docs/html/functions_s.html                    |   24 +-
 docs/html/functions_t.html                    |   15 +-
 docs/html/functions_type.html                 |    5 +-
 docs/html/functions_u.html                    |    3 +-
 docs/html/functions_v.html                    |    5 +-
 docs/html/functions_vars.html                 |    7 +-
 docs/html/functions_vars.js                   |    1 +
 docs/html/functions_vars_b.html               |    1 +
 docs/html/functions_vars_c.html               |    6 +-
 docs/html/functions_vars_d.html               |   15 +-
 docs/html/functions_vars_e.html               |    7 +-
 docs/html/functions_vars_l.html               |   13 +-
 docs/html/functions_vars_m.html               |  105 +-
 docs/html/functions_vars_n.html               |    7 +-
 docs/html/functions_vars_p.html               |    2 +
 docs/html/functions_vars_q.html               |    1 +
 docs/html/functions_vars_r.html               |    5 +-
 docs/html/functions_vars_s.html               |    7 +-
 docs/html/functions_vars_t.html               |    8 +-
 docs/html/functions_vars_u.html               |    1 +
 docs/html/functions_vars_v.html               |  116 +
 docs/html/functions_vars_z.html               |    1 +
 docs/html/functions_w.html                    |    4 +
 docs/html/functions_z.html                    |    1 +
 docs/html/functions_~.html                    |   10 +
 docs/html/globals.html                        |   31 +-
 docs/html/globals_defs.html                   |  114 +
 docs/html/globals_func.html                   |   26 +-
 docs/html/hierarchy.html                      |  194 +-
 docs/html/hierarchy.js                        |   54 +-
 docs/html/index.html                          |   21 +-
 docs/html/io_2bindings_8cpp.html              |   16 +-
 docs/html/io_2bindings_8cpp.js                |    2 +-
 docs/html/io_2bindings_8h.html                |   10 +-
 docs/html/io_2bindings_8h.js                  |    2 +-
 docs/html/logging_8cpp.html                   |    1 -
 docs/html/logging_8h.html                     |    6 +-
 docs/html/logging_8h.js                       |    2 +-
 docs/html/md_docs_2static_2usage.html         |    2 +-
 docs/html/menudata.js                         |   14 +-
 docs/html/namespacegridfire.html              |  256 ++-
 docs/html/namespacegridfire.js                |   32 +-
 .../namespacegridfire_1_1diagnostics.html     |  241 ++
 docs/html/namespacegridfire_1_1rates.html     |  123 +
 docs/html/namespacegridfire_1_1rates.js       |    4 +
 .../namespacegridfire_1_1rates_1_1weak.html   |  456 ++++
 .../namespacegridfire_1_1rates_1_1weak.js     |   44 +
 docs/html/namespacegridfire_1_1reaclib.html   |   22 +-
 docs/html/namespacegridfire_1_1reaclib.js     |    4 +-
 docs/html/namespacegridfire_1_1reaction.html  |   76 +-
 docs/html/namespacegridfire_1_1reaction.js    |   14 +-
 docs/html/namespacegridfire_1_1screening.html |    2 +
 docs/html/namespacegridfire_1_1screening.js   |    1 +
 docs/html/namespacegridfire_1_1solver.html    |    4 +-
 docs/html/namespacegridfire_1_1solver.js      |    2 +-
 docs/html/namespacegridfire_1_1trigger.html   |  200 ++
 docs/html/namespacegridfire_1_1trigger.js     |   12 +
 ...amespacegridfire_1_1trigger_1_1solver.html |  123 +
 .../namespacegridfire_1_1trigger_1_1solver.js |    4 +
 ...re_1_1trigger_1_1solver_1_1_c_v_o_d_e.html |  193 ++
 ...fire_1_1trigger_1_1solver_1_1_c_v_o_d_e.js |    7 +
 docs/html/namespacegridfire_1_1utils.html     |   59 +-
 docs/html/namespacegridfire_1_1utils.js       |    7 +
 docs/html/namespacemembers.html               |   45 +-
 docs/html/namespacemembers_enum.html          |    6 +
 docs/html/namespacemembers_func.html          |   32 +-
 docs/html/namespacemembers_type.html          |    2 -
 docs/html/namespacemembers_vars.html          |    5 +-
 docs/html/namespaces.html                     |   28 +-
 docs/html/namespacestd.html                   |    2 -
 docs/html/namespacestd.js                     |    1 -
 docs/html/navtreedata.js                      |   20 +-
 docs/html/navtreeindex0.js                    |  406 ++--
 docs/html/navtreeindex1.js                    |  500 ++---
 docs/html/navtreeindex10.js                   |  253 +++
 docs/html/navtreeindex2.js                    |  444 ++--
 docs/html/navtreeindex3.js                    |  386 ++--
 docs/html/navtreeindex4.js                    |  500 ++---
 docs/html/navtreeindex5.js                    |  500 ++---
 docs/html/navtreeindex6.js                    |  500 ++---
 docs/html/navtreeindex7.js                    |  488 ++--
 docs/html/navtreeindex8.js                    |  253 +++
 docs/html/navtreeindex9.js                    |  253 +++
 docs/html/network_8cpp.html                   |    1 -
 docs/html/network_8h.html                     |    1 -
 docs/html/partition_2bindings_8cpp.html       |   40 +-
 docs/html/partition_2bindings_8cpp.js         |    8 +-
 docs/html/partition_2bindings_8h.html         |   40 +-
 docs/html/partition_2bindings_8h.js           |    8 +-
 docs/html/partition__ground_8cpp.html         |    1 -
 .../partition__rauscher__thielemann_8cpp.html |    1 -
 .../partition__rauscher__thielemann_8h.html   |    2 -
 docs/html/priming_8cpp.html                   |   20 +-
 docs/html/priming_8cpp.js                     |    8 +-
 docs/html/priming_8h.html                     |   22 +-
 docs/html/priming_8h.js                       |    6 +-
 docs/html/py__screening_8h.html               |    3 -
 docs/html/py__solver_8cpp.html                |    1 -
 docs/html/reaclib_8cpp.html                   |   10 +-
 docs/html/reaclib_8cpp.js                     |    4 +-
 docs/html/reaclib_8h.html                     |    6 +-
 docs/html/reaclib_8h.js                       |    2 +-
 docs/html/reaction_8cpp.html                  |    6 +-
 docs/html/reaction_8cpp.js                    |    3 +-
 docs/html/reaction_8h.html                    |   33 +-
 docs/html/reaction_8h.js                      |   14 +-
 docs/html/screening_2bindings_8cpp.html       |    1 -
 docs/html/screening__intermediate_8h.html     |  134 ++
 docs/html/screening__intermediate_8h.js       |    4 +
 docs/html/search/all_11.js                    |   39 +-
 docs/html/search/all_12.js                    |  283 ++-
 docs/html/search/all_13.js                    |   69 +-
 docs/html/search/all_14.js                    |   23 +-
 docs/html/search/all_15.js                    |  137 +-
 docs/html/search/all_16.js                    |    3 +-
 docs/html/search/all_17.js                    |  137 +-
 docs/html/search/all_18.js                    |  113 +-
 docs/html/search/all_19.js                    |   58 +-
 docs/html/search/all_1a.js                    |   24 +-
 docs/html/search/all_1b.js                    |   21 +-
 docs/html/search/all_1c.js                    |   32 +-
 docs/html/search/all_1e.js                    |    3 +-
 docs/html/search/all_1f.js                    |   30 +-
 docs/html/search/all_6.js                     |   96 +-
 docs/html/search/all_7.js                     |   40 +-
 docs/html/search/all_8.js                     |  144 +-
 docs/html/search/all_9.js                     |   51 +-
 docs/html/search/all_a.js                     |  110 +-
 docs/html/search/all_b.js                     |   29 +-
 docs/html/search/all_c.js                     |  118 +-
 docs/html/search/all_d.js                     |   15 +-
 docs/html/search/all_e.js                     |   64 +-
 docs/html/search/all_f.js                     |    3 +-
 docs/html/search/classes_0.js                 |    8 +-
 docs/html/search/classes_1.js                 |    3 +-
 docs/html/search/classes_10.js                |   14 +-
 docs/html/search/classes_11.js                |   12 +-
 docs/html/search/classes_12.js                |    9 +-
 docs/html/search/classes_14.js                |    8 +-
 docs/html/search/classes_2.js                 |    8 +-
 docs/html/search/classes_3.js                 |    3 +-
 docs/html/search/classes_4.js                 |   16 +-
 docs/html/search/classes_7.js                 |    5 +-
 docs/html/search/classes_8.js                 |    7 +-
 docs/html/search/classes_9.js                 |    3 +-
 docs/html/search/classes_a.js                 |    3 +-
 docs/html/search/classes_c.js                 |    3 +-
 docs/html/search/classes_d.js                 |    4 +-
 docs/html/search/defines_0.js                 |    4 +
 docs/html/search/enums_2.js                   |    3 +-
 docs/html/search/enums_3.js                   |    4 +-
 docs/html/search/enums_4.js                   |    2 +-
 docs/html/search/enums_5.js                   |    3 +-
 docs/html/search/enums_6.js                   |    4 +
 docs/html/search/enums_7.js                   |    5 +
 docs/html/search/enums_8.js                   |    4 +
 docs/html/search/enums_9.js                   |    5 +
 docs/html/search/enumvalues_1.js              |    5 +-
 docs/html/search/enumvalues_10.js             |    4 +
 docs/html/search/enumvalues_11.js             |    4 +
 docs/html/search/enumvalues_3.js              |   12 +-
 docs/html/search/enumvalues_4.js              |   13 +-
 docs/html/search/enumvalues_5.js              |    6 +-
 docs/html/search/enumvalues_6.js              |    4 +-
 docs/html/search/enumvalues_7.js              |    3 +-
 docs/html/search/enumvalues_8.js              |    6 +-
 docs/html/search/enumvalues_9.js              |    3 +-
 docs/html/search/enumvalues_a.js              |    5 +-
 docs/html/search/enumvalues_b.js              |    2 +-
 docs/html/search/enumvalues_c.js              |    3 +-
 docs/html/search/enumvalues_d.js              |    6 +-
 docs/html/search/enumvalues_e.js              |    5 +-
 docs/html/search/enumvalues_f.js              |    6 +
 docs/html/search/files_1.js                   |    4 +-
 docs/html/search/files_2.js                   |   24 +-
 docs/html/search/files_3.js                   |   25 +-
 docs/html/search/files_4.js                   |    3 +-
 docs/html/search/files_5.js                   |    3 +-
 docs/html/search/files_6.js                   |    5 +-
 docs/html/search/files_7.js                   |   25 +-
 docs/html/search/files_8.js                   |   29 +-
 docs/html/search/files_9.js                   |   18 +-
 docs/html/search/files_a.js                   |   12 +-
 docs/html/search/files_b.js                   |    8 +
 docs/html/search/files_c.js                   |    4 +
 docs/html/search/files_d.js                   |    9 +
 docs/html/search/functions_0.js               |   17 +-
 docs/html/search/functions_1.js               |    7 +-
 docs/html/search/functions_10.js              |   54 +-
 docs/html/search/functions_11.js              |   28 +-
 docs/html/search/functions_12.js              |    9 +-
 docs/html/search/functions_13.js              |    7 +-
 docs/html/search/functions_14.js              |   11 +-
 docs/html/search/functions_15.js              |   21 +-
 docs/html/search/functions_2.js               |   76 +-
 docs/html/search/functions_3.js               |    4 +-
 docs/html/search/functions_4.js               |   17 +-
 docs/html/search/functions_5.js               |   11 +-
 docs/html/search/functions_6.js               |   63 +-
 docs/html/search/functions_7.js               |    2 +-
 docs/html/search/functions_8.js               |   23 +-
 docs/html/search/functions_9.js               |    4 +-
 docs/html/search/functions_a.js               |   17 +-
 docs/html/search/functions_b.js               |   31 +-
 docs/html/search/functions_c.js               |   25 +-
 docs/html/search/functions_d.js               |   30 +-
 docs/html/search/functions_e.js               |   18 +-
 docs/html/search/functions_f.js               |   36 +-
 docs/html/search/namespaces_0.js              |   26 +-
 docs/html/search/related_0.js                 |    2 +-
 docs/html/search/searchdata.js                |   25 +-
 docs/html/search/typedefs_6.js                |    3 +-
 docs/html/search/typedefs_b.js                |    4 +-
 docs/html/search/typedefs_d.js                |    2 +-
 docs/html/search/variables_0.js               |   27 +-
 docs/html/search/variables_1.js               |    3 +-
 docs/html/search/variables_10.js              |   10 +-
 docs/html/search/variables_11.js              |   18 +-
 docs/html/search/variables_12.js              |    8 +-
 docs/html/search/variables_13.js              |    2 +-
 docs/html/search/variables_14.js              |    2 +-
 docs/html/search/variables_15.js              |    5 +
 docs/html/search/variables_2.js               |    6 +-
 docs/html/search/variables_3.js               |   19 +-
 docs/html/search/variables_4.js               |    7 +-
 docs/html/search/variables_7.js               |    7 +-
 docs/html/search/variables_9.js               |   15 +-
 docs/html/search/variables_a.js               |  231 +-
 docs/html/search/variables_b.js               |   15 +-
 docs/html/search/variables_d.js               |    4 +-
 docs/html/search/variables_e.js               |    3 +-
 docs/html/search/variables_f.js               |    9 +-
 docs/html/solver_2bindings_8cpp.html          |    1 -
 docs/html/solver_8h.html                      |   18 +-
 docs/html/solver_8h.js                        |    4 -
 docs/html/solver__interfaces_8h.html          |  124 ++
 docs/html/solver__interfaces_8h.js            |    4 +
 ...engine_view_1_1_reaction_flow-members.html |    2 +-
 ...daptive_engine_view_1_1_reaction_flow.html |   10 +-
 ..._adaptive_engine_view_1_1_reaction_flow.js |    2 +-
 ...idfire_1_1_energy_derivatives-members.html |  120 +
 ...structgridfire_1_1_energy_derivatives.html |  202 ++
 .../structgridfire_1_1_energy_derivatives.js  |    6 +
 ...titioning_engine_view_1_1_cache_stats.html |   12 +-
 ...engine_view_1_1_eigen_functor-members.html |   19 +-
 ...tioning_engine_view_1_1_eigen_functor.html |  119 +-
 ...titioning_engine_view_1_1_eigen_functor.js |   11 +-
 ...g_engine_view_1_1_q_s_e_group-members.html |    6 +-
 ...titioning_engine_view_1_1_q_s_e_group.html |   74 +-
 ...artitioning_engine_view_1_1_q_s_e_group.js |    6 +-
 docs/html/structgridfire_1_1_net_in.html      |    8 +
 .../structgridfire_1_1_net_out-members.html   |    2 +
 docs/html/structgridfire_1_1_net_out.html     |   38 +
 docs/html/structgridfire_1_1_net_out.js       |    2 +
 .../structgridfire_1_1_q_s_e_cache_key.html   |   14 +-
 ...gridfire_1_1_step_derivatives-members.html |    3 +-
 .../structgridfire_1_1_step_derivatives.html  |   56 +-
 .../structgridfire_1_1_step_derivatives.js    |    3 +-
 ...expectations_1_1_engine_error-members.html |    2 +-
 ...fire_1_1expectations_1_1_engine_error.html |   10 +-
 ...idfire_1_1expectations_1_1_engine_error.js |    2 +-
 ...ations_1_1_engine_index_error-members.html |    2 +-
 ..._1expectations_1_1_engine_index_error.html |    4 +-
 ...ations_1_1_stale_engine_error-members.html |    2 +-
 ..._1expectations_1_1_stale_engine_error.html |    4 +-
 ...1_1weak_1_1_bounds_error_info-members.html |  121 +
 ..._1rates_1_1weak_1_1_bounds_error_info.html |  209 ++
 ..._1_1rates_1_1weak_1_1_bounds_error_info.js |    7 +
 ...1weak_1_1_interpolation_error-members.html |  119 +
 ...rates_1_1weak_1_1_interpolation_error.html |  169 ++
 ..._1rates_1_1weak_1_1_interpolation_error.js |    5 +
 ...ates_1_1weak_1_1_isotope_grid-members.html |  121 +
 ...ire_1_1rates_1_1weak_1_1_isotope_grid.html |  210 ++
 ...dfire_1_1rates_1_1weak_1_1_isotope_grid.js |    7 +
 ...tes_1_1weak_1_1_rate_data_row-members.html |  128 ++
 ...re_1_1rates_1_1weak_1_1_rate_data_row.html |  354 +++
 ...fire_1_1rates_1_1weak_1_1_rate_data_row.js |   14 +
 ...eak_1_1_weak_rate_derivatives-members.html |  123 +
 ...tes_1_1weak_1_1_weak_rate_derivatives.html |  230 ++
 ...rates_1_1weak_1_1_weak_rate_derivatives.js |    9 +
 ...1_1weak_1_1_weak_rate_payload-members.html |  123 +
 ..._1rates_1_1weak_1_1_weak_rate_payload.html |  248 +++
 ..._1_1rates_1_1weak_1_1_weak_rate_payload.js |    9 +
 ..._1_weak_reaction_1_1constants-members.html |  131 ++
 ..._1weak_1_1_weak_reaction_1_1constants.html |  350 +++
 ..._1_1weak_1_1_weak_reaction_1_1constants.js |   17 +
 ...1weak_1_1_weak_reaction_entry-members.html |  124 ++
 ...rates_1_1weak_1_1_weak_reaction_entry.html |  289 +++
 ..._1rates_1_1weak_1_1_weak_reaction_entry.js |   10 +
 ...ategy_1_1_c_v_o_d_e_user_data-members.html |  124 ++
 ...lver_strategy_1_1_c_v_o_d_e_user_data.html |  244 ++
 ...solver_strategy_1_1_c_v_o_d_e_user_data.js |   10 +
 ...strategy_1_1_timestep_context-members.html |  129 ++
 ..._solver_strategy_1_1_timestep_context.html |  417 ++++
 ..._e_solver_strategy_1_1_timestep_context.js |   14 +
 ...e_solver_strategy_1_1_timestep_context.png |  Bin 0 -> 1162 bytes
 ...ire_1_1solver_1_1_solver_context_base.html |    6 +-
 ...fire_1_1solver_1_1_solver_context_base.png |  Bin 1141 -> 1163 bytes
 ...1_1trigger_1_1_trigger_result-members.html |  121 +
 ...ridfire_1_1trigger_1_1_trigger_result.html |  204 ++
 ...tgridfire_1_1trigger_1_1_trigger_result.js |    7 +
 ...ire_1_1reaction_1_1_reaction_set_01_4.html |    6 +-
 docs/html/table__format_8h.html               |  148 ++
 docs/html/table__format_8h.js                 |    6 +
 docs/html/trigger__abstract_8h.html           |  134 ++
 docs/html/trigger__abstract_8h.js             |    4 +
 docs/html/trigger__logical_8h.html            |  155 ++
 docs/html/trigger__logical_8h.js              |    8 +
 docs/html/trigger__pprint_8h.html             |  134 ++
 docs/html/trigger__pprint_8h.js               |    4 +
 docs/html/trigger__result_8h.html             |  145 ++
 docs/html/trigger__result_8h.js               |    4 +
 docs/html/types_2bindings_8cpp.html           |   10 +-
 docs/html/types_2bindings_8cpp.js             |    2 +-
 docs/html/types_2bindings_8h.html             |   10 +-
 docs/html/types_2bindings_8h.js               |    2 +-
 docs/html/utils_2bindings_8cpp.html           |    1 -
 docs/html/weak_8cpp.html                      |  138 ++
 docs/html/weak_8h.html                        |  177 ++
 docs/html/weak_8h.js                          |    8 +
 docs/html/weak__interpolator_8cpp.html        |  139 ++
 docs/html/weak__interpolator_8h.html          |  141 ++
 docs/html/weak__interpolator_8h.js            |    4 +
 docs/html/weak__rate__library_8h.html         |  135 ++
 docs/html/weak__rate__library_8h.js           |    4 +
 docs/html/weak__types_8h.html                 |  218 ++
 docs/html/weak__types_8h.js                   |   40 +
 600 files changed, 39207 insertions(+), 9125 deletions(-)
 create mode 100644 docs/html/_c_v_o_d_e__solver__strategy_8cpp.html
 create mode 100644 docs/html/_c_v_o_d_e__solver__strategy_8h.html
 create mode 100644 docs/html/_c_v_o_d_e__solver__strategy_8h.js
 create mode 100644 docs/html/class_solver_plugin_interface-members.html
 create mode 100644 docs/html/class_solver_plugin_interface.html
 create mode 100644 docs/html/class_solver_plugin_interface.js
 create mode 100644 docs/html/class_solver_plugin_interface.png
 create mode 100644 docs/html/classgridfire_1_1_reaction_set-members.html
 create mode 100644 docs/html/classgridfire_1_1_reaction_set.html
 create mode 100644 docs/html/classgridfire_1_1_reaction_set.js
 create mode 100644 docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator-members.html
 create mode 100644 docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html
 create mode 100644 docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.js
 create mode 100644 docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction-members.html
 create mode 100644 docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html
 create mode 100644 docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.js
 create mode 100644 docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.png
 create mode 100644 docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate-members.html
 create mode 100644 docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html
 create mode 100644 docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.js
 create mode 100644 docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.png
 create mode 100644 docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map-members.html
 create mode 100644 docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html
 create mode 100644 docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.js
 create mode 100644 docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction-members.html
 create mode 100644 docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html
 create mode 100644 docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.js
 create mode 100644 docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.png
 create mode 100644 docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction-members.html
 create mode 100644 docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction.html
 create mode 100644 docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction.js
 create mode 100644 docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction.png
 create mode 100644 docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model-members.html
 create mode 100644 docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model.html
 create mode 100644 docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model.js
 create mode 100644 docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model.png
 create mode 100644 docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy-members.html
 create mode 100644 docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html
 create mode 100644 docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.js
 create mode 100644 docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.png
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_and_trigger-members.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_and_trigger.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_and_trigger.js
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_and_trigger.png
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger-members.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.js
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.png
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_logical_trigger-members.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_logical_trigger.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_logical_trigger.png
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_not_trigger-members.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_not_trigger.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_not_trigger.js
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_not_trigger.png
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_or_trigger-members.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_or_trigger.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_or_trigger.js
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_or_trigger.png
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_trigger-members.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_trigger.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_trigger.js
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1_trigger.png
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger-members.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.js
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.png
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger-members.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.js
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.png
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger-members.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.js
 create mode 100644 docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.png
 create mode 100644 docs/html/classgridfire_1_1utils_1_1_column-members.html
 create mode 100644 docs/html/classgridfire_1_1utils_1_1_column.html
 create mode 100644 docs/html/classgridfire_1_1utils_1_1_column.js
 create mode 100644 docs/html/classgridfire_1_1utils_1_1_column.png
 create mode 100644 docs/html/classgridfire_1_1utils_1_1_column_base-members.html
 create mode 100644 docs/html/classgridfire_1_1utils_1_1_column_base.html
 create mode 100644 docs/html/classgridfire_1_1utils_1_1_column_base.js
 create mode 100644 docs/html/classgridfire_1_1utils_1_1_column_base.png
 create mode 100644 docs/html/dir_230a420a279f78b45ea47b2d650bf1a7.html
 create mode 100644 docs/html/dir_230a420a279f78b45ea47b2d650bf1a7.js
 create mode 100644 docs/html/dir_3c6e26120bd25666a475751afc8a34bc.html
 create mode 100644 docs/html/dir_3c6e26120bd25666a475751afc8a34bc.js
 create mode 100644 docs/html/dir_67aa14af464fbd247881f6980be7deb5.html
 create mode 100644 docs/html/dir_67aa14af464fbd247881f6980be7deb5.js
 create mode 100644 docs/html/dir_6ccae78e9032a1b4db4873aea5f3b43d.html
 create mode 100644 docs/html/dir_6ccae78e9032a1b4db4873aea5f3b43d.js
 create mode 100644 docs/html/dir_897cfbcdbf2b76d535de4ec754728fa0.html
 create mode 100644 docs/html/dir_897cfbcdbf2b76d535de4ec754728fa0.js
 create mode 100644 docs/html/dir_ab918a70d5de27403bd1202d71acc71b.html
 create mode 100644 docs/html/dir_ab918a70d5de27403bd1202d71acc71b.js
 create mode 100644 docs/html/dir_b0553efdd4ad7f265c0580564941af0c.html
 create mode 100644 docs/html/dir_b0553efdd4ad7f265c0580564941af0c.js
 create mode 100644 docs/html/dir_b893969db6254951682857c720518fa8.html
 create mode 100644 docs/html/dir_b893969db6254951682857c720518fa8.js
 create mode 100644 docs/html/dir_c99e86cd0291aa23d2204e664fe571c1.html
 create mode 100644 docs/html/dir_c99e86cd0291aa23d2204e664fe571c1.js
 create mode 100644 docs/html/dir_d2ba15782ddae84c3d0c5f0e63bda236.html
 create mode 100644 docs/html/dir_d2ba15782ddae84c3d0c5f0e63bda236.js
 create mode 100644 docs/html/dir_da65b9a371696ae0281f77edf1c03876.html
 create mode 100644 docs/html/dir_da65b9a371696ae0281f77edf1c03876.js
 create mode 100644 docs/html/dir_f4383b1846ef599868e873d917f1344c.html
 create mode 100644 docs/html/dir_f4383b1846ef599868e873d917f1344c.js
 create mode 100644 docs/html/dynamic__engine__diagnostics_8cpp.html
 create mode 100644 docs/html/dynamic__engine__diagnostics_8cpp.js
 create mode 100644 docs/html/dynamic__engine__diagnostics_8h.html
 create mode 100644 docs/html/dynamic__engine__diagnostics_8h.js
 create mode 100644 docs/html/engine__partitioning__trigger_8cpp.html
 create mode 100644 docs/html/engine__partitioning__trigger_8cpp.js
 create mode 100644 docs/html/engine__partitioning__trigger_8h.html
 create mode 100644 docs/html/engine__partitioning__trigger_8h.js
 create mode 100644 docs/html/functions_vars_v.html
 create mode 100644 docs/html/globals_defs.html
 create mode 100644 docs/html/namespacegridfire_1_1diagnostics.html
 create mode 100644 docs/html/namespacegridfire_1_1rates.html
 create mode 100644 docs/html/namespacegridfire_1_1rates.js
 create mode 100644 docs/html/namespacegridfire_1_1rates_1_1weak.html
 create mode 100644 docs/html/namespacegridfire_1_1rates_1_1weak.js
 create mode 100644 docs/html/namespacegridfire_1_1trigger.html
 create mode 100644 docs/html/namespacegridfire_1_1trigger.js
 create mode 100644 docs/html/namespacegridfire_1_1trigger_1_1solver.html
 create mode 100644 docs/html/namespacegridfire_1_1trigger_1_1solver.js
 create mode 100644 docs/html/namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html
 create mode 100644 docs/html/namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.js
 create mode 100644 docs/html/namespacegridfire_1_1utils.js
 create mode 100644 docs/html/navtreeindex10.js
 create mode 100644 docs/html/navtreeindex8.js
 create mode 100644 docs/html/navtreeindex9.js
 create mode 100644 docs/html/screening__intermediate_8h.html
 create mode 100644 docs/html/screening__intermediate_8h.js
 create mode 100644 docs/html/search/defines_0.js
 create mode 100644 docs/html/search/enums_6.js
 create mode 100644 docs/html/search/enums_7.js
 create mode 100644 docs/html/search/enums_8.js
 create mode 100644 docs/html/search/enums_9.js
 create mode 100644 docs/html/search/enumvalues_10.js
 create mode 100644 docs/html/search/enumvalues_11.js
 create mode 100644 docs/html/search/enumvalues_f.js
 create mode 100644 docs/html/search/files_b.js
 create mode 100644 docs/html/search/files_c.js
 create mode 100644 docs/html/search/files_d.js
 create mode 100644 docs/html/search/variables_15.js
 create mode 100644 docs/html/solver__interfaces_8h.html
 create mode 100644 docs/html/solver__interfaces_8h.js
 create mode 100644 docs/html/structgridfire_1_1_energy_derivatives-members.html
 create mode 100644 docs/html/structgridfire_1_1_energy_derivatives.html
 create mode 100644 docs/html/structgridfire_1_1_energy_derivatives.js
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info-members.html
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.js
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error-members.html
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error.js
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid-members.html
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid.js
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row-members.html
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row.js
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives-members.html
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.js
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload-members.html
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.js
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants-members.html
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.js
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry-members.html
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html
 create mode 100644 docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.js
 create mode 100644 docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data-members.html
 create mode 100644 docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html
 create mode 100644 docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.js
 create mode 100644 docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context-members.html
 create mode 100644 docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html
 create mode 100644 docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.js
 create mode 100644 docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.png
 create mode 100644 docs/html/structgridfire_1_1trigger_1_1_trigger_result-members.html
 create mode 100644 docs/html/structgridfire_1_1trigger_1_1_trigger_result.html
 create mode 100644 docs/html/structgridfire_1_1trigger_1_1_trigger_result.js
 create mode 100644 docs/html/table__format_8h.html
 create mode 100644 docs/html/table__format_8h.js
 create mode 100644 docs/html/trigger__abstract_8h.html
 create mode 100644 docs/html/trigger__abstract_8h.js
 create mode 100644 docs/html/trigger__logical_8h.html
 create mode 100644 docs/html/trigger__logical_8h.js
 create mode 100644 docs/html/trigger__pprint_8h.html
 create mode 100644 docs/html/trigger__pprint_8h.js
 create mode 100644 docs/html/trigger__result_8h.html
 create mode 100644 docs/html/trigger__result_8h.js
 create mode 100644 docs/html/weak_8cpp.html
 create mode 100644 docs/html/weak_8h.html
 create mode 100644 docs/html/weak_8h.js
 create mode 100644 docs/html/weak__interpolator_8cpp.html
 create mode 100644 docs/html/weak__interpolator_8h.html
 create mode 100644 docs/html/weak__interpolator_8h.js
 create mode 100644 docs/html/weak__rate__library_8h.html
 create mode 100644 docs/html/weak__rate__library_8h.js
 create mode 100644 docs/html/weak__types_8h.html
 create mode 100644 docs/html/weak__types_8h.js

diff --git a/docs/html/_c_v_o_d_e__solver__strategy_8cpp.html b/docs/html/_c_v_o_d_e__solver__strategy_8cpp.html
new file mode 100644
index 00000000..7d936a3d
--- /dev/null
+++ b/docs/html/_c_v_o_d_e__solver__strategy_8cpp.html
@@ -0,0 +1,141 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/lib/solver/strategies/CVODE_solver_strategy.cpp File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('_c_v_o_d_e__solver__strategy_8cpp.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#namespaces">Namespaces</a>  </div>
+  <div class="headertitle"><div class="title">CVODE_solver_strategy.cpp File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><code>#include &quot;<a class="el" href="_c_v_o_d_e__solver__strategy_8h.html">gridfire/solver/strategies/CVODE_solver_strategy.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="network_8h.html">gridfire/network.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="table__format_8h.html">gridfire/utils/table_format.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="dynamic__engine__diagnostics_8h.html">gridfire/engine/diagnostics/dynamic_engine_diagnostics.h</a>&quot;</code><br />
+<code>#include &quot;quill/LogMacros.h&quot;</code><br />
+<code>#include &quot;fourdst/composition/composition.h&quot;</code><br />
+<code>#include &lt;cstdint&gt;</code><br />
+<code>#include &lt;limits&gt;</code><br />
+<code>#include &lt;string&gt;</code><br />
+<code>#include &lt;unordered_map&gt;</code><br />
+<code>#include &lt;stdexcept&gt;</code><br />
+<code>#include &lt;algorithm&gt;</code><br />
+<code>#include &quot;fourdst/composition/exceptions/exceptions_composition.h&quot;</code><br />
+<code>#include &quot;<a class="el" href="engine__graph_8h.html">gridfire/engine/engine_graph.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="engine__partitioning__trigger_8h.html">gridfire/solver/strategies/triggers/engine_partitioning_trigger.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="trigger__pprint_8h.html">gridfire/trigger/procedures/trigger_pprint.h</a>&quot;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_c85d3e3c5052e9ad9ce18c6863244a25.html">lib</a></li><li class="navelem"><a class="el" href="dir_4fd0dc9a50f7a53e22cb356c650f915e.html">solver</a></li><li class="navelem"><a class="el" href="dir_b0553efdd4ad7f265c0580564941af0c.html">strategies</a></li><li class="navelem"><a class="el" href="_c_v_o_d_e__solver__strategy_8cpp.html">CVODE_solver_strategy.cpp</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/_c_v_o_d_e__solver__strategy_8h.html b/docs/html/_c_v_o_d_e__solver__strategy_8h.html
new file mode 100644
index 00000000..eaa301d3
--- /dev/null
+++ b/docs/html/_c_v_o_d_e__solver__strategy_8h.html
@@ -0,0 +1,155 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/solver/strategies/CVODE_solver_strategy.h File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('_c_v_o_d_e__solver__strategy_8h.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#namespaces">Namespaces</a>  </div>
+  <div class="headertitle"><div class="title">CVODE_solver_strategy.h File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><code>#include &quot;<a class="el" href="solver_8h.html">gridfire/solver/solver.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="engine__abstract_8h.html">gridfire/engine/engine_abstract.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="network_8h.html">gridfire/network.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="exceptions_8h.html">gridfire/exceptions/exceptions.h</a>&quot;</code><br />
+<code>#include &quot;fourdst/composition/atomicSpecies.h&quot;</code><br />
+<code>#include &quot;fourdst/config/config.h&quot;</code><br />
+<code>#include &lt;functional&gt;</code><br />
+<code>#include &lt;any&gt;</code><br />
+<code>#include &lt;string&gt;</code><br />
+<code>#include &lt;vector&gt;</code><br />
+<code>#include &lt;tuple&gt;</code><br />
+<code>#include &lt;cvode/cvode.h&gt;</code><br />
+<code>#include &lt;sundials/sundials_types.h&gt;</code><br />
+<code>#include &lt;sundials/sundials_context.h&gt;</code><br />
+<code>#include &lt;sunmatrix/sunmatrix_dense.h&gt;</code><br />
+<code>#include &lt;sunlinsol/sunlinsol_dense.h&gt;</code><br />
+<code>#include &lt;nvector/nvector_serial.h&gt;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stiff ODE integrator backed by SUNDIALS CVODE (BDF) for network + energy.  <a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Immutable view of the current integration state passed to callbacks.  <a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A helper struct to pass C++ context to C-style CVODE callbacks.  <a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html">solver</a></li><li class="navelem"><a class="el" href="dir_230a420a279f78b45ea47b2d650bf1a7.html">strategies</a></li><li class="navelem"><a class="el" href="_c_v_o_d_e__solver__strategy_8h.html">CVODE_solver_strategy.h</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/_c_v_o_d_e__solver__strategy_8h.js b/docs/html/_c_v_o_d_e__solver__strategy_8h.js
new file mode 100644
index 00000000..ea5cfe84
--- /dev/null
+++ b/docs/html/_c_v_o_d_e__solver__strategy_8h.js
@@ -0,0 +1,6 @@
+var _c_v_o_d_e__solver__strategy_8h =
+[
+    [ "gridfire::solver::CVODESolverStrategy", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy" ],
+    [ "gridfire::solver::CVODESolverStrategy::TimestepContext", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context" ],
+    [ "gridfire::solver::CVODESolverStrategy::CVODEUserData", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data" ]
+];
\ No newline at end of file
diff --git a/docs/html/annotated.html b/docs/html/annotated.html
index aba42d1f..8e4966ca 100644
--- a/docs/html/annotated.html
+++ b/docs/html/annotated.html
@@ -103,7 +103,7 @@ $(function(){initNavTree('annotated.html',''); initResizable(true); });
 </div><!--header-->
 <div class="contents">
 <div class="textblock">Here are the classes, structs, unions and interfaces with brief descriptions:</div><div class="directory">
-<div class="levels">[detail level <span onclick="javascript:dynsection.toggleLevel(1);">1</span><span onclick="javascript:dynsection.toggleLevel(2);">2</span><span onclick="javascript:dynsection.toggleLevel(3);">3</span><span onclick="javascript:dynsection.toggleLevel(4);">4</span>]</div><table class="directory">
+<div class="levels">[detail level <span onclick="javascript:dynsection.toggleLevel(1);">1</span><span onclick="javascript:dynsection.toggleLevel(2);">2</span><span onclick="javascript:dynsection.toggleLevel(3);">3</span><span onclick="javascript:dynsection.toggleLevel(4);">4</span><span onclick="javascript:dynsection.toggleLevel(5);">5</span>]</div><table class="directory">
 <tr id="row_0_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_0_" class="arrow" onclick="dynsection.toggleFolder('0_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire.html" target="_self">gridfire</a></td><td class="desc"></td></tr>
 <tr id="row_0_0_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_0_" class="arrow" onclick="dynsection.toggleFolder('0_0_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1approx8.html" target="_self">approx8</a></td><td class="desc"></td></tr>
 <tr id="row_0_0_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html" target="_self">Approx8Net</a></td><td class="desc">Contains constants and arrays related to the nuclear network </td></tr>
@@ -115,82 +115,115 @@ $(function(){initNavTree('annotated.html',''); initResizable(true); });
 <tr id="row_0_1_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html" target="_self">FailedToPartitionEngineError</a></td><td class="desc"></td></tr>
 <tr id="row_0_1_2_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html" target="_self">NetworkResizedError</a></td><td class="desc"></td></tr>
 <tr id="row_0_1_3_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_error.html" target="_self">StaleEngineError</a></td><td class="desc"></td></tr>
-<tr id="row_0_1_4_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_1_4_" class="arrow" onclick="dynsection.toggleFolder('0_1_4_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html" target="_self">StaleEngineTrigger</a></td><td class="desc"></td></tr>
-<tr id="row_0_1_4_0_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html" target="_self">state</a></td><td class="desc"></td></tr>
-<tr id="row_0_1_5_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html" target="_self">UnableToSetNetworkReactionsError</a></td><td class="desc"></td></tr>
-<tr id="row_0_2_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_2_" class="arrow" onclick="dynsection.toggleFolder('0_2_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1expectations.html" target="_self">expectations</a></td><td class="desc"></td></tr>
-<tr id="row_0_2_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html" target="_self">EngineError</a></td><td class="desc"></td></tr>
-<tr id="row_0_2_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html" target="_self">EngineIndexError</a></td><td class="desc"></td></tr>
-<tr id="row_0_2_2_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html" target="_self">StaleEngineError</a></td><td class="desc"></td></tr>
-<tr id="row_0_3_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_3_" class="arrow" onclick="dynsection.toggleFolder('0_3_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1io.html" target="_self">io</a></td><td class="desc"></td></tr>
-<tr id="row_0_3_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html" target="_self">MESANetworkFileParser</a></td><td class="desc">A parser for MESA-format network files </td></tr>
-<tr id="row_0_3_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html" target="_self">NetworkFileParser</a></td><td class="desc">An abstract base class for network file parsers </td></tr>
-<tr id="row_0_3_2_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html" target="_self">SimpleReactionListFileParser</a></td><td class="desc">A parser for simple text files containing a list of reactions </td></tr>
-<tr id="row_0_4_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_4_" class="arrow" onclick="dynsection.toggleFolder('0_4_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1partition.html" target="_self">partition</a></td><td class="desc"></td></tr>
-<tr id="row_0_4_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_4_0_" class="arrow" onclick="dynsection.toggleFolder('0_4_0_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1partition_1_1record.html" target="_self">record</a></td><td class="desc"></td></tr>
-<tr id="row_0_4_0_0_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html" target="_self">RauscherThielemannPartitionDataRecord</a></td><td class="desc">Packed binary record of Rauscher-Thielemann partition function data for an isotope </td></tr>
+<tr id="row_0_1_4_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_1_4_" class="arrow" onclick="dynsection.toggleFolder('0_1_4_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html" target="_self">StaleEngineTrigger</a></td><td class="desc"></td></tr>
+<tr id="row_0_1_4_0_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html" target="_self">state</a></td><td class="desc"></td></tr>
+<tr id="row_0_1_5_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html" target="_self">UnableToSetNetworkReactionsError</a></td><td class="desc"></td></tr>
+<tr id="row_0_2_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_2_" class="arrow" onclick="dynsection.toggleFolder('0_2_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1expectations.html" target="_self">expectations</a></td><td class="desc"></td></tr>
+<tr id="row_0_2_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html" target="_self">EngineError</a></td><td class="desc"></td></tr>
+<tr id="row_0_2_1_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html" target="_self">EngineIndexError</a></td><td class="desc"></td></tr>
+<tr id="row_0_2_2_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html" target="_self">StaleEngineError</a></td><td class="desc"></td></tr>
+<tr id="row_0_3_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_3_" class="arrow" onclick="dynsection.toggleFolder('0_3_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1io.html" target="_self">io</a></td><td class="desc"></td></tr>
+<tr id="row_0_3_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html" target="_self">MESANetworkFileParser</a></td><td class="desc">A parser for MESA-format network files </td></tr>
+<tr id="row_0_3_1_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html" target="_self">NetworkFileParser</a></td><td class="desc">An abstract base class for network file parsers </td></tr>
+<tr id="row_0_3_2_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html" target="_self">SimpleReactionListFileParser</a></td><td class="desc">A parser for simple text files containing a list of reactions </td></tr>
+<tr id="row_0_4_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_4_" class="arrow" onclick="dynsection.toggleFolder('0_4_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1partition.html" target="_self">partition</a></td><td class="desc"></td></tr>
+<tr id="row_0_4_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_4_0_" class="arrow" onclick="dynsection.toggleFolder('0_4_0_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1partition_1_1record.html" target="_self">record</a></td><td class="desc"></td></tr>
+<tr id="row_0_4_0_0_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html" target="_self">RauscherThielemannPartitionDataRecord</a></td><td class="desc">Packed binary record of Rauscher-Thielemann partition function data for an isotope </td></tr>
 <tr id="row_0_4_1_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html" target="_self">CompositePartitionFunction</a></td><td class="desc">Combines multiple <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html" title="Abstract interface for evaluating nuclear partition functions.">PartitionFunction</a> instances into a single composite strategy </td></tr>
 <tr id="row_0_4_2_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html" target="_self">GroundStatePartitionFunction</a></td><td class="desc">Partition function implementation for nuclear ground states </td></tr>
 <tr id="row_0_4_3_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1partition_1_1_partition_function.html" target="_self">PartitionFunction</a></td><td class="desc">Abstract interface for evaluating nuclear partition functions </td></tr>
-<tr id="row_0_4_4_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_4_4_" class="arrow" onclick="dynsection.toggleFolder('0_4_4_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html" target="_self">RauscherThielemannPartitionFunction</a></td><td class="desc">Partition function using Rauscher-Thielemann tabulated normalized G-values </td></tr>
-<tr id="row_0_4_4_0_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html" target="_self">IdentifiedIsotope</a></td><td class="desc"></td></tr>
-<tr id="row_0_4_4_1_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html" target="_self">InterpolationPoints</a></td><td class="desc"></td></tr>
-<tr id="row_0_4_4_2_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html" target="_self">IsotopeData</a></td><td class="desc"></td></tr>
-<tr id="row_0_5_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_5_" class="arrow" onclick="dynsection.toggleFolder('0_5_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1reaclib.html" target="_self">reaclib</a></td><td class="desc"></td></tr>
-<tr id="row_0_5_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html" target="_self">ReactionRecord</a></td><td class="desc"></td></tr>
-<tr id="row_0_6_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_6_" class="arrow" onclick="dynsection.toggleFolder('0_6_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1reaction.html" target="_self">reaction</a></td><td class="desc"></td></tr>
-<tr id="row_0_6_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html" target="_self">LogicalReaction</a></td><td class="desc">Represents a "logical" reaction that aggregates rates from multiple sources </td></tr>
-<tr id="row_0_6_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html" target="_self">RateCoefficientSet</a></td><td class="desc">Holds the seven coefficients for the REACLIB rate equation </td></tr>
-<tr id="row_0_6_2_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" target="_self">Reaction</a></td><td class="desc">Represents a single nuclear reaction from a specific data source </td></tr>
-<tr id="row_0_6_3_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html" target="_self">TemplatedReactionSet</a></td><td class="desc"></td></tr>
-<tr id="row_0_7_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_7_" class="arrow" onclick="dynsection.toggleFolder('0_7_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1screening.html" target="_self">screening</a></td><td class="desc"></td></tr>
-<tr id="row_0_7_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html" target="_self">BareScreeningModel</a></td><td class="desc">A screening model that applies no screening effect </td></tr>
-<tr id="row_0_7_1_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html" target="_self">ScreeningModel</a></td><td class="desc">An abstract base class for plasma screening models </td></tr>
-<tr id="row_0_7_2_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html" target="_self">WeakScreeningModel</a></td><td class="desc">Implements the weak screening model based on the Debye-Hückel approximation </td></tr>
-<tr id="row_0_8_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_8_" class="arrow" onclick="dynsection.toggleFolder('0_8_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1solver.html" target="_self">solver</a></td><td class="desc"></td></tr>
-<tr id="row_0_8_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_8_0_" class="arrow" onclick="dynsection.toggleFolder('0_8_0_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html" target="_self">DirectNetworkSolver</a></td><td class="desc">A network solver that directly integrates the reaction network ODEs </td></tr>
-<tr id="row_0_8_0_0_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html" target="_self">JacobianFunctor</a></td><td class="desc">Functor for calculating the Jacobian matrix </td></tr>
-<tr id="row_0_8_0_1_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html" target="_self">RHSManager</a></td><td class="desc">Functor for calculating the right-hand side of the ODEs </td></tr>
-<tr id="row_0_8_0_2_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html" target="_self">TimestepContext</a></td><td class="desc">Context for the timestep callback function for the <a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html" title="A network solver that directly integrates the reaction network ODEs.">DirectNetworkSolver</a> </td></tr>
-<tr id="row_0_8_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html" target="_self">NetworkSolverStrategy</a></td><td class="desc">Abstract base class for network solver strategies </td></tr>
-<tr id="row_0_8_2_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1solver_1_1_solver_context_base.html" target="_self">SolverContextBase</a></td><td class="desc">Base class for solver callback contexts </td></tr>
-<tr id="row_0_9_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_9_" class="arrow" onclick="dynsection.toggleFolder('0_9_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_adaptive_engine_view.html" target="_self">AdaptiveEngineView</a></td><td class="desc">An engine view that dynamically adapts the reaction network based on runtime conditions </td></tr>
-<tr id="row_0_9_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html" target="_self">ReactionFlow</a></td><td class="desc">A struct to hold a reaction and its flow rate </td></tr>
-<tr id="row_0_10_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_defined_engine_view.html" target="_self">DefinedEngineView</a></td><td class="desc"></td></tr>
-<tr id="row_0_11_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_dynamic_engine.html" target="_self">DynamicEngine</a></td><td class="desc">Abstract class for engines supporting Jacobian and stoichiometry operations </td></tr>
-<tr id="row_0_12_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_engine.html" target="_self">Engine</a></td><td class="desc">Abstract base class for a reaction network engine </td></tr>
-<tr id="row_0_13_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_engine_view.html" target="_self">EngineView</a></td><td class="desc">Abstract base class for a "view" of a reaction network engine </td></tr>
-<tr id="row_0_14_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_file_defined_engine_view.html" target="_self">FileDefinedEngineView</a></td><td class="desc"></td></tr>
-<tr id="row_0_15_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_15_" class="arrow" onclick="dynsection.toggleFolder('0_15_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_graph_engine.html" target="_self">GraphEngine</a></td><td class="desc">A reaction network engine that uses a graph-based representation </td></tr>
-<tr id="row_0_15_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html" target="_self">AtomicReverseRate</a></td><td class="desc"></td></tr>
-<tr id="row_0_15_1_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html" target="_self">constants</a></td><td class="desc"></td></tr>
-<tr id="row_0_15_2_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html" target="_self">PrecomputedReaction</a></td><td class="desc"></td></tr>
-<tr id="row_0_16_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_16_" class="arrow" onclick="dynsection.toggleFolder('0_16_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html" target="_self">MultiscalePartitioningEngineView</a></td><td class="desc">An engine view that partitions the reaction network into multiple groups based on timescales </td></tr>
-<tr id="row_0_16_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html" target="_self">CacheStats</a></td><td class="desc">Struct for tracking cache statistics </td></tr>
-<tr id="row_0_16_1_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html" target="_self">EigenFunctor</a></td><td class="desc">Functor for solving QSE abundances using Eigen's nonlinear optimization </td></tr>
-<tr id="row_0_16_2_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html" target="_self">QSEGroup</a></td><td class="desc">Struct representing a QSE group </td></tr>
-<tr id="row_0_17_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_net_in.html" target="_self">NetIn</a></td><td class="desc"></td></tr>
-<tr id="row_0_18_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_net_out.html" target="_self">NetOut</a></td><td class="desc"></td></tr>
-<tr id="row_0_19_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_network.html" target="_self">Network</a></td><td class="desc"></td></tr>
-<tr id="row_0_20_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_network_priming_engine_view.html" target="_self">NetworkPrimingEngineView</a></td><td class="desc">Provides a view of a <a class="el" href="classgridfire_1_1_dynamic_engine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> filtered to reactions involving a specified priming species </td></tr>
-<tr id="row_0_21_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_priming_report.html" target="_self">PrimingReport</a></td><td class="desc">Captures the result of a network priming operation </td></tr>
-<tr id="row_0_22_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_q_s_e_cache_config.html" target="_self">QSECacheConfig</a></td><td class="desc">Configuration struct for the QSE cache </td></tr>
-<tr id="row_0_23_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_q_s_e_cache_key.html" target="_self">QSECacheKey</a></td><td class="desc">Key struct for the QSE abundance cache </td></tr>
-<tr id="row_0_24_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_reaction.html" target="_self">Reaction</a></td><td class="desc">Represents a single nuclear reaction from a specific data source </td></tr>
-<tr id="row_0_25_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_step_derivatives.html" target="_self">StepDerivatives</a></td><td class="desc">Structure holding derivatives and energy generation for a network step </td></tr>
+<tr id="row_0_4_4_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_4_4_" class="arrow" onclick="dynsection.toggleFolder('0_4_4_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html" target="_self">RauscherThielemannPartitionFunction</a></td><td class="desc">Partition function using Rauscher-Thielemann tabulated normalized G-values </td></tr>
+<tr id="row_0_4_4_0_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html" target="_self">IdentifiedIsotope</a></td><td class="desc"></td></tr>
+<tr id="row_0_4_4_1_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html" target="_self">InterpolationPoints</a></td><td class="desc"></td></tr>
+<tr id="row_0_4_4_2_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html" target="_self">IsotopeData</a></td><td class="desc"></td></tr>
+<tr id="row_0_5_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_5_" class="arrow" onclick="dynsection.toggleFolder('0_5_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1rates.html" target="_self">rates</a></td><td class="desc"></td></tr>
+<tr id="row_0_5_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_5_0_" class="arrow" onclick="dynsection.toggleFolder('0_5_0_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1rates_1_1weak.html" target="_self">weak</a></td><td class="desc"></td></tr>
+<tr id="row_0_5_0_0_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html" target="_self">BoundsErrorInfo</a></td><td class="desc">Detailed bounds information for a BOUNDS_ERROR </td></tr>
+<tr id="row_0_5_0_1_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html" target="_self">InterpolationError</a></td><td class="desc">Interpolation error with optional per-axis bounds details </td></tr>
+<tr id="row_0_5_0_2_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html" target="_self">IsotopeGrid</a></td><td class="desc">Regular 3D grid and payloads for a single isotope (A,Z) </td></tr>
+<tr id="row_0_5_0_3_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html" target="_self">RateDataRow</a></td><td class="desc">One row of the unified weak-rate data table for a specific isotope and state </td></tr>
+<tr id="row_0_5_0_4_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html" target="_self">WeakRateDerivatives</a></td><td class="desc">Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye), mu_e) </td></tr>
+<tr id="row_0_5_0_5_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html" target="_self">WeakRateInterpolator</a></td><td class="desc">3D table interpolator for tabulated weak reaction data by isotope </td></tr>
+<tr id="row_0_5_0_6_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html" target="_self">WeakRatePayload</a></td><td class="desc">Interpolated weak-rate payload at a single state </td></tr>
+<tr id="row_0_5_0_7_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_0_5_0_7_" class="arrow" onclick="dynsection.toggleFolder('0_5_0_7_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html" target="_self">WeakReaction</a></td><td class="desc">Concrete <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> representing a single weak process (beta±, e−/e+ capture) </td></tr>
+<tr id="row_0_5_0_7_0_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html" target="_self">AtomicWeakRate</a></td><td class="desc">CppAD atomic that wraps weak-rate interpolation for AD evaluation </td></tr>
+<tr id="row_0_5_0_7_1_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html" target="_self">constants</a></td><td class="desc"></td></tr>
+<tr id="row_0_5_0_8_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html" target="_self">WeakReactionEntry</a></td><td class="desc">A single weak-reaction data point (type, state, and log values) </td></tr>
+<tr id="row_0_5_0_9_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html" target="_self">WeakReactionMap</a></td><td class="desc">Index of available weak reactions keyed by species </td></tr>
+<tr id="row_0_6_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_6_" class="arrow" onclick="dynsection.toggleFolder('0_6_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1reaclib.html" target="_self">reaclib</a></td><td class="desc"></td></tr>
+<tr id="row_0_6_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html" target="_self">ReactionRecord</a></td><td class="desc"></td></tr>
+<tr id="row_0_7_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_7_" class="arrow" onclick="dynsection.toggleFolder('0_7_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1reaction.html" target="_self">reaction</a></td><td class="desc"></td></tr>
+<tr id="row_0_7_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html" target="_self">LogicalReaclibReaction</a></td><td class="desc">Represents a "logical" reaction that aggregates rates from multiple sources </td></tr>
+<tr id="row_0_7_1_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html" target="_self">RateCoefficientSet</a></td><td class="desc">Holds the seven coefficients for the REACLIB rate equation </td></tr>
+<tr id="row_0_7_2_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html" target="_self">ReaclibReaction</a></td><td class="desc"></td></tr>
+<tr id="row_0_7_3_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" target="_self">Reaction</a></td><td class="desc">Represents a single nuclear reaction from a specific data source </td></tr>
+<tr id="row_0_7_4_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html" target="_self">ReactionSet</a></td><td class="desc"></td></tr>
+<tr id="row_0_8_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_8_" class="arrow" onclick="dynsection.toggleFolder('0_8_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1screening.html" target="_self">screening</a></td><td class="desc"></td></tr>
+<tr id="row_0_8_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html" target="_self">BareScreeningModel</a></td><td class="desc">A screening model that applies no screening effect </td></tr>
+<tr id="row_0_8_1_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html" target="_self">IntermediateScreeningModel</a></td><td class="desc"></td></tr>
+<tr id="row_0_8_2_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html" target="_self">ScreeningModel</a></td><td class="desc">An abstract base class for plasma screening models </td></tr>
+<tr id="row_0_8_3_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html" target="_self">WeakScreeningModel</a></td><td class="desc">Implements the weak screening model based on the Debye-Hückel approximation </td></tr>
+<tr id="row_0_9_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_9_" class="arrow" onclick="dynsection.toggleFolder('0_9_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1solver.html" target="_self">solver</a></td><td class="desc"></td></tr>
+<tr id="row_0_9_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_9_0_" class="arrow" onclick="dynsection.toggleFolder('0_9_0_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html" target="_self">CVODESolverStrategy</a></td><td class="desc">Stiff ODE integrator backed by SUNDIALS CVODE (BDF) for network + energy </td></tr>
+<tr id="row_0_9_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html" target="_self">CVODEUserData</a></td><td class="desc">A helper struct to pass C++ context to C-style CVODE callbacks </td></tr>
+<tr id="row_0_9_0_1_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html" target="_self">TimestepContext</a></td><td class="desc">Immutable view of the current integration state passed to callbacks </td></tr>
+<tr id="row_0_9_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html" target="_self">NetworkSolverStrategy</a></td><td class="desc">Abstract base class for network solver strategies </td></tr>
+<tr id="row_0_9_2_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1solver_1_1_solver_context_base.html" target="_self">SolverContextBase</a></td><td class="desc">Base class for solver callback contexts </td></tr>
+<tr id="row_0_10_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_10_" class="arrow" onclick="dynsection.toggleFolder('0_10_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1trigger.html" target="_self">trigger</a></td><td class="desc"></td></tr>
+<tr id="row_0_10_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_10_0_" class="arrow" onclick="dynsection.toggleFolder('0_10_0_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1trigger_1_1solver.html" target="_self">solver</a></td><td class="desc"></td></tr>
+<tr id="row_0_10_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_0_10_0_0_" class="arrow" onclick="dynsection.toggleFolder('0_10_0_0_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html" target="_self">CVODE</a></td><td class="desc"></td></tr>
+<tr id="row_0_10_0_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html" target="_self">OffDiagonalTrigger</a></td><td class="desc">Triggers when any off-diagonal Jacobian entry magnitude exceeds a threshold </td></tr>
+<tr id="row_0_10_0_0_1_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html" target="_self">SimulationTimeTrigger</a></td><td class="desc">Triggers when the current simulation time advances by at least a fixed interval </td></tr>
+<tr id="row_0_10_0_0_2_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html" target="_self">TimestepCollapseTrigger</a></td><td class="desc">Triggers when the timestep deviates from its recent average beyond a threshold </td></tr>
+<tr id="row_0_10_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html" target="_self">AndTrigger</a></td><td class="desc">Logical conjunction of two triggers with short-circuit evaluation </td></tr>
+<tr id="row_0_10_2_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html" target="_self">EveryNthTrigger</a></td><td class="desc">Pass-through trigger that fires every Nth time its child trigger is true </td></tr>
+<tr id="row_0_10_3_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1_logical_trigger.html" target="_self">LogicalTrigger</a></td><td class="desc"></td></tr>
+<tr id="row_0_10_4_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html" target="_self">NotTrigger</a></td><td class="desc">Logical negation of a trigger </td></tr>
+<tr id="row_0_10_5_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html" target="_self">OrTrigger</a></td><td class="desc">Logical disjunction of two triggers with short-circuit evaluation </td></tr>
+<tr id="row_0_10_6_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html" target="_self">Trigger</a></td><td class="desc">Generic trigger interface for signaling events/conditions during integration </td></tr>
+<tr id="row_0_10_7_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html" target="_self">TriggerResult</a></td><td class="desc"></td></tr>
+<tr id="row_0_11_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_11_" class="arrow" onclick="dynsection.toggleFolder('0_11_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1utils.html" target="_self">utils</a></td><td class="desc"></td></tr>
+<tr id="row_0_11_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1utils_1_1_column.html" target="_self">Column</a></td><td class="desc"></td></tr>
+<tr id="row_0_11_1_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1utils_1_1_column_base.html" target="_self">ColumnBase</a></td><td class="desc"></td></tr>
+<tr id="row_0_12_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_12_" class="arrow" onclick="dynsection.toggleFolder('0_12_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_adaptive_engine_view.html" target="_self">AdaptiveEngineView</a></td><td class="desc">An engine view that dynamically adapts the reaction network based on runtime conditions </td></tr>
+<tr id="row_0_12_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html" target="_self">ReactionFlow</a></td><td class="desc">A struct to hold a reaction and its flow rate </td></tr>
+<tr id="row_0_13_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_defined_engine_view.html" target="_self">DefinedEngineView</a></td><td class="desc"></td></tr>
+<tr id="row_0_14_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_dynamic_engine.html" target="_self">DynamicEngine</a></td><td class="desc">Abstract class for engines supporting Jacobian and stoichiometry operations </td></tr>
+<tr id="row_0_15_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_energy_derivatives.html" target="_self">EnergyDerivatives</a></td><td class="desc"></td></tr>
+<tr id="row_0_16_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_engine.html" target="_self">Engine</a></td><td class="desc">Abstract base class for a reaction network engine </td></tr>
+<tr id="row_0_17_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_engine_view.html" target="_self">EngineView</a></td><td class="desc">Abstract base class for a "view" of a reaction network engine </td></tr>
+<tr id="row_0_18_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_file_defined_engine_view.html" target="_self">FileDefinedEngineView</a></td><td class="desc"></td></tr>
+<tr id="row_0_19_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_19_" class="arrow" onclick="dynsection.toggleFolder('0_19_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_graph_engine.html" target="_self">GraphEngine</a></td><td class="desc">A reaction network engine that uses a graph-based representation </td></tr>
+<tr id="row_0_19_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html" target="_self">AtomicReverseRate</a></td><td class="desc"></td></tr>
+<tr id="row_0_19_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html" target="_self">constants</a></td><td class="desc"></td></tr>
+<tr id="row_0_19_2_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html" target="_self">PrecomputedReaction</a></td><td class="desc"></td></tr>
+<tr id="row_0_20_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_20_" class="arrow" onclick="dynsection.toggleFolder('0_20_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html" target="_self">MultiscalePartitioningEngineView</a></td><td class="desc">An engine view that partitions the reaction network into multiple groups based on timescales </td></tr>
+<tr id="row_0_20_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html" target="_self">CacheStats</a></td><td class="desc">Struct for tracking cache statistics </td></tr>
+<tr id="row_0_20_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html" target="_self">EigenFunctor</a></td><td class="desc">Functor for solving QSE abundances using Eigen's nonlinear optimization </td></tr>
+<tr id="row_0_20_2_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html" target="_self">QSEGroup</a></td><td class="desc">Struct representing a QSE group </td></tr>
+<tr id="row_0_21_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_net_in.html" target="_self">NetIn</a></td><td class="desc"></td></tr>
+<tr id="row_0_22_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_net_out.html" target="_self">NetOut</a></td><td class="desc"></td></tr>
+<tr id="row_0_23_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_network.html" target="_self">Network</a></td><td class="desc"></td></tr>
+<tr id="row_0_24_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_network_priming_engine_view.html" target="_self">NetworkPrimingEngineView</a></td><td class="desc">Provides a view of a <a class="el" href="classgridfire_1_1_dynamic_engine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> filtered to reactions involving a specified priming species </td></tr>
+<tr id="row_0_25_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_priming_report.html" target="_self">PrimingReport</a></td><td class="desc">Captures the result of a network priming operation </td></tr>
+<tr id="row_0_26_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_q_s_e_cache_config.html" target="_self">QSECacheConfig</a></td><td class="desc">Configuration struct for the QSE cache </td></tr>
+<tr id="row_0_27_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_q_s_e_cache_key.html" target="_self">QSECacheKey</a></td><td class="desc">Key struct for the QSE abundance cache </td></tr>
+<tr id="row_0_28_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_reaction.html" target="_self">Reaction</a></td><td class="desc">Represents a single nuclear reaction from a specific data source </td></tr>
+<tr id="row_0_29_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_reaction_set.html" target="_self">ReactionSet</a></td><td class="desc"></td></tr>
+<tr id="row_0_30_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_step_derivatives.html" target="_self">StepDerivatives</a></td><td class="desc">Structure holding derivatives and energy generation for a network step </td></tr>
 <tr id="row_1_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_1_" class="arrow" onclick="dynsection.toggleFolder('1_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacestd.html" target="_self">std</a></td><td class="desc">STL namespace </td></tr>
 <tr id="row_1_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html" target="_self">hash&lt; gridfire::QSECacheKey &gt;</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html" target="_self">hash&lt; gridfire::reaction::LogicalReactionSet &gt;</a></td><td class="desc"></td></tr>
-<tr id="row_1_2_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html" target="_self">hash&lt; gridfire::reaction::Reaction &gt;</a></td><td class="desc"></td></tr>
-<tr id="row_1_3_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html" target="_self">hash&lt; gridfire::reaction::ReactionSet &gt;</a></td><td class="desc"></td></tr>
-<tr id="row_2_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_dynamic_engine.html" target="_self">PyDynamicEngine</a></td><td class="desc"></td></tr>
-<tr id="row_3_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_dynamic_engine_view.html" target="_self">PyDynamicEngineView</a></td><td class="desc"></td></tr>
-<tr id="row_4_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_dynamic_network_solver_strategy.html" target="_self">PyDynamicNetworkSolverStrategy</a></td><td class="desc"></td></tr>
-<tr id="row_5_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_engine.html" target="_self">PyEngine</a></td><td class="desc"></td></tr>
-<tr id="row_6_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_engine_view.html" target="_self">PyEngineView</a></td><td class="desc"></td></tr>
-<tr id="row_7_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_network_file_parser.html" target="_self">PyNetworkFileParser</a></td><td class="desc"></td></tr>
-<tr id="row_8_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_partition_function.html" target="_self">PyPartitionFunction</a></td><td class="desc"></td></tr>
-<tr id="row_9_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_screening.html" target="_self">PyScreening</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html" target="_self">hash&lt; gridfire::reaction::Reaction &gt;</a></td><td class="desc"></td></tr>
+<tr id="row_1_2_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html" target="_self">hash&lt; gridfire::reaction::ReactionSet &gt;</a></td><td class="desc"></td></tr>
+<tr id="row_2_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_dynamic_engine.html" target="_self">PyDynamicEngine</a></td><td class="desc"></td></tr>
+<tr id="row_3_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_dynamic_engine_view.html" target="_self">PyDynamicEngineView</a></td><td class="desc"></td></tr>
+<tr id="row_4_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_dynamic_network_solver_strategy.html" target="_self">PyDynamicNetworkSolverStrategy</a></td><td class="desc"></td></tr>
+<tr id="row_5_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_engine.html" target="_self">PyEngine</a></td><td class="desc"></td></tr>
+<tr id="row_6_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_engine_view.html" target="_self">PyEngineView</a></td><td class="desc"></td></tr>
+<tr id="row_7_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_network_file_parser.html" target="_self">PyNetworkFileParser</a></td><td class="desc"></td></tr>
+<tr id="row_8_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_partition_function.html" target="_self">PyPartitionFunction</a></td><td class="desc"></td></tr>
+<tr id="row_9_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_screening.html" target="_self">PyScreening</a></td><td class="desc"></td></tr>
+<tr id="row_10_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_solver_plugin_interface.html" target="_self">SolverPluginInterface</a></td><td class="desc"></td></tr>
 </table>
 </div><!-- directory -->
 </div><!-- contents -->
diff --git a/docs/html/annotated_dup.js b/docs/html/annotated_dup.js
index 8617d7d1..bc23fcaa 100644
--- a/docs/html/annotated_dup.js
+++ b/docs/html/annotated_dup.js
@@ -34,28 +34,65 @@ var annotated_dup =
         [ "PartitionFunction", "classgridfire_1_1partition_1_1_partition_function.html", "classgridfire_1_1partition_1_1_partition_function" ],
         [ "RauscherThielemannPartitionFunction", "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html", "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function" ]
       ] ],
+      [ "rates", "namespacegridfire_1_1rates.html", [
+        [ "weak", "namespacegridfire_1_1rates_1_1weak.html", [
+          [ "BoundsErrorInfo", "structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html", "structgridfire_1_1rates_1_1weak_1_1_bounds_error_info" ],
+          [ "InterpolationError", "structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html", "structgridfire_1_1rates_1_1weak_1_1_interpolation_error" ],
+          [ "IsotopeGrid", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid" ],
+          [ "RateDataRow", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row" ],
+          [ "WeakRateDerivatives", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives" ],
+          [ "WeakRateInterpolator", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator" ],
+          [ "WeakRatePayload", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload" ],
+          [ "WeakReaction", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction" ],
+          [ "WeakReactionEntry", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry" ],
+          [ "WeakReactionMap", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map" ]
+        ] ]
+      ] ],
       [ "reaclib", "namespacegridfire_1_1reaclib.html", [
         [ "ReactionRecord", "structgridfire_1_1reaclib_1_1_reaction_record.html", "structgridfire_1_1reaclib_1_1_reaction_record" ]
       ] ],
       [ "reaction", "namespacegridfire_1_1reaction.html", [
-        [ "LogicalReaction", "classgridfire_1_1reaction_1_1_logical_reaction.html", "classgridfire_1_1reaction_1_1_logical_reaction" ],
+        [ "LogicalReaclibReaction", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction" ],
         [ "RateCoefficientSet", "structgridfire_1_1reaction_1_1_rate_coefficient_set.html", "structgridfire_1_1reaction_1_1_rate_coefficient_set" ],
+        [ "ReaclibReaction", "classgridfire_1_1reaction_1_1_reaclib_reaction.html", "classgridfire_1_1reaction_1_1_reaclib_reaction" ],
         [ "Reaction", "classgridfire_1_1reaction_1_1_reaction.html", "classgridfire_1_1reaction_1_1_reaction" ],
-        [ "TemplatedReactionSet", "classgridfire_1_1reaction_1_1_templated_reaction_set.html", "classgridfire_1_1reaction_1_1_templated_reaction_set" ]
+        [ "ReactionSet", "classgridfire_1_1reaction_1_1_reaction_set.html", "classgridfire_1_1reaction_1_1_reaction_set" ]
       ] ],
       [ "screening", "namespacegridfire_1_1screening.html", [
         [ "BareScreeningModel", "classgridfire_1_1screening_1_1_bare_screening_model.html", "classgridfire_1_1screening_1_1_bare_screening_model" ],
+        [ "IntermediateScreeningModel", "classgridfire_1_1screening_1_1_intermediate_screening_model.html", "classgridfire_1_1screening_1_1_intermediate_screening_model" ],
         [ "ScreeningModel", "classgridfire_1_1screening_1_1_screening_model.html", "classgridfire_1_1screening_1_1_screening_model" ],
         [ "WeakScreeningModel", "classgridfire_1_1screening_1_1_weak_screening_model.html", "classgridfire_1_1screening_1_1_weak_screening_model" ]
       ] ],
       [ "solver", "namespacegridfire_1_1solver.html", [
-        [ "DirectNetworkSolver", "classgridfire_1_1solver_1_1_direct_network_solver.html", "classgridfire_1_1solver_1_1_direct_network_solver" ],
+        [ "CVODESolverStrategy", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy" ],
         [ "NetworkSolverStrategy", "classgridfire_1_1solver_1_1_network_solver_strategy.html", "classgridfire_1_1solver_1_1_network_solver_strategy" ],
         [ "SolverContextBase", "structgridfire_1_1solver_1_1_solver_context_base.html", "structgridfire_1_1solver_1_1_solver_context_base" ]
       ] ],
+      [ "trigger", "namespacegridfire_1_1trigger.html", [
+        [ "solver", "namespacegridfire_1_1trigger_1_1solver.html", [
+          [ "CVODE", "namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html", [
+            [ "OffDiagonalTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger" ],
+            [ "SimulationTimeTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger" ],
+            [ "TimestepCollapseTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger" ]
+          ] ]
+        ] ],
+        [ "AndTrigger", "classgridfire_1_1trigger_1_1_and_trigger.html", "classgridfire_1_1trigger_1_1_and_trigger" ],
+        [ "EveryNthTrigger", "classgridfire_1_1trigger_1_1_every_nth_trigger.html", "classgridfire_1_1trigger_1_1_every_nth_trigger" ],
+        [ "LogicalTrigger", "classgridfire_1_1trigger_1_1_logical_trigger.html", null ],
+        [ "NotTrigger", "classgridfire_1_1trigger_1_1_not_trigger.html", "classgridfire_1_1trigger_1_1_not_trigger" ],
+        [ "OrTrigger", "classgridfire_1_1trigger_1_1_or_trigger.html", "classgridfire_1_1trigger_1_1_or_trigger" ],
+        [ "Trigger", "classgridfire_1_1trigger_1_1_trigger.html", "classgridfire_1_1trigger_1_1_trigger" ],
+        [ "TriggerResult", "structgridfire_1_1trigger_1_1_trigger_result.html", "structgridfire_1_1trigger_1_1_trigger_result" ]
+      ] ],
+      [ "utils", "namespacegridfire_1_1utils.html", [
+        [ "Column", "classgridfire_1_1utils_1_1_column.html", "classgridfire_1_1utils_1_1_column" ],
+        [ "ColumnBase", "classgridfire_1_1utils_1_1_column_base.html", "classgridfire_1_1utils_1_1_column_base" ]
+      ] ],
       [ "AdaptiveEngineView", "classgridfire_1_1_adaptive_engine_view.html", "classgridfire_1_1_adaptive_engine_view" ],
       [ "DefinedEngineView", "classgridfire_1_1_defined_engine_view.html", "classgridfire_1_1_defined_engine_view" ],
       [ "DynamicEngine", "classgridfire_1_1_dynamic_engine.html", "classgridfire_1_1_dynamic_engine" ],
+      [ "EnergyDerivatives", "structgridfire_1_1_energy_derivatives.html", "structgridfire_1_1_energy_derivatives" ],
       [ "Engine", "classgridfire_1_1_engine.html", "classgridfire_1_1_engine" ],
       [ "EngineView", "classgridfire_1_1_engine_view.html", "classgridfire_1_1_engine_view" ],
       [ "FileDefinedEngineView", "classgridfire_1_1_file_defined_engine_view.html", "classgridfire_1_1_file_defined_engine_view" ],
@@ -69,11 +106,11 @@ var annotated_dup =
       [ "QSECacheConfig", "structgridfire_1_1_q_s_e_cache_config.html", "structgridfire_1_1_q_s_e_cache_config" ],
       [ "QSECacheKey", "structgridfire_1_1_q_s_e_cache_key.html", "structgridfire_1_1_q_s_e_cache_key" ],
       [ "Reaction", "classgridfire_1_1_reaction.html", "classgridfire_1_1_reaction" ],
+      [ "ReactionSet", "classgridfire_1_1_reaction_set.html", "classgridfire_1_1_reaction_set" ],
       [ "StepDerivatives", "structgridfire_1_1_step_derivatives.html", "structgridfire_1_1_step_derivatives" ]
     ] ],
     [ "std", "namespacestd.html", [
       [ "hash< gridfire::QSECacheKey >", "structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html", "structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4" ],
-      [ "hash< gridfire::reaction::LogicalReactionSet >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4" ],
       [ "hash< gridfire::reaction::Reaction >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4" ],
       [ "hash< gridfire::reaction::ReactionSet >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4" ]
     ] ],
@@ -84,5 +121,6 @@ var annotated_dup =
     [ "PyEngineView", "class_py_engine_view.html", "class_py_engine_view" ],
     [ "PyNetworkFileParser", "class_py_network_file_parser.html", "class_py_network_file_parser" ],
     [ "PyPartitionFunction", "class_py_partition_function.html", "class_py_partition_function" ],
-    [ "PyScreening", "class_py_screening.html", "class_py_screening" ]
+    [ "PyScreening", "class_py_screening.html", "class_py_screening" ],
+    [ "SolverPluginInterface", "class_solver_plugin_interface.html", "class_solver_plugin_interface" ]
 ];
\ No newline at end of file
diff --git a/docs/html/bindings_8cpp.html b/docs/html/bindings_8cpp.html
index 668a5a20..c38739a1 100644
--- a/docs/html/bindings_8cpp.html
+++ b/docs/html/bindings_8cpp.html
@@ -106,7 +106,6 @@ $(function(){initNavTree('bindings_8cpp.html',''); initResizable(true); });
 <div class="contents">
 <div class="textblock"><code>#include &lt;pybind11/pybind11.h&gt;</code><br />
 <code>#include &lt;pybind11/stl.h&gt;</code><br />
-<code>#include &lt;string&gt;</code><br />
 <code>#include &quot;<a class="el" href="types_2bindings_8h.html">types/bindings.h</a>&quot;</code><br />
 <code>#include &quot;<a class="el" href="partition_2bindings_8h.html">partition/bindings.h</a>&quot;</code><br />
 <code>#include &quot;<a class="el" href="expectations_2bindings_8h.html">expectations/bindings.h</a>&quot;</code><br />
diff --git a/docs/html/class_py_dynamic_engine-members.html b/docs/html/class_py_dynamic_engine-members.html
index 833a0049..c9988147 100644
--- a/docs/html/class_py_dynamic_engine-members.html
+++ b/docs/html/class_py_dynamic_engine-members.html
@@ -105,29 +105,38 @@ $(function(){initNavTree('class_py_dynamic_engine.html',''); initResizable(true)
 
 <p>This is the complete list of members for <a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a>, including all inherited members.</p>
 <table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a">calculateMolarReactionFlow</a>(const gridfire::reaction::Reaction &amp;reaction, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a">calculateRHSAndEnergy</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d">generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#aa0f1fd3f0c0185395193d1b6897d64c5">generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const gridfire::SparsityPattern &amp;sparsityPattern) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#adba68716d832b6100e08d32fbc36f13c">getDepth</a>() const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159">getJacobianMatrixEntry</a>(int i, int j) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a5988cfba247631ba6c00795cafda9a38">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a264bd5a8891c8c5f0dff32867effe547">calculateEpsDerivatives</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a">calculateMolarReactionFlow</a>(const gridfire::reaction::Reaction &amp;reaction, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a39cf5b738eea0a275bf8c0eb5789fab3">gridfire::DynamicEngine::calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a">calculateRHSAndEnergy</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740">gridfire::DynamicEngine::calculateRHSAndEnergy</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d">generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#aa0f1fd3f0c0185395193d1b6897d64c5">generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const gridfire::SparsityPattern &amp;sparsityPattern) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a21d15531309456ee83f7675251e7a1bf">gridfire::DynamicEngine::generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd">gridfire::DynamicEngine::generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#adba68716d832b6100e08d32fbc36f13c">getDepth</a>() const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159">getJacobianMatrixEntry</a>(int i, int j) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a88dbf350dc0ea3e2b64d825f489e0d60">gridfire::DynamicEngine::getJacobianMatrixEntry</a>(const fourdst::atomic::Species &amp;rowSpecies, const fourdst::atomic::Species &amp;colSpecies) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a1d5143640666631501cf229bc491516e">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3">getSpeciesDestructionTimescales</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a2ee1d745c1c21b9fcb652c96c42f1091">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22">getSpeciesTimescales</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83">getStoichiometryMatrixEntry</a>(int speciesIndex, int reactionIndex) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14">isStale</a>(const gridfire::NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03">m_species_cache</a></td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac">mapNetInToMolarAbundanceVector</a>(const gridfire::NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878">primeEngine</a>(const gridfire::NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a3d30a9116825ab2c5c209bc2712126bc">rebuild</a>(const fourdst::composition::Composition &amp;comp, gridfire::BuildDepthType depth) override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6">setNetworkReactions</a>(const gridfire::reaction::LogicalReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac">setScreeningModel</a>(gridfire::screening::ScreeningType model) override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8">update</a>(const gridfire::NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3">getSpeciesDestructionTimescales</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a25c040d3078f6ff2ef38f733eb68f1fa">gridfire::DynamicEngine::getSpeciesDestructionTimescales</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a95d10a7b240d543a1bc6c67ddf2dc8e0">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22">getSpeciesTimescales</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#ae7114f5ebc6667b5e5971c0450ed03d9">gridfire::DynamicEngine::getSpeciesTimescales</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83">getStoichiometryMatrixEntry</a>(int speciesIndex, int reactionIndex) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#ad19c8451b6f624e2938f771cc067d5c1">gridfire::DynamicEngine::getStoichiometryMatrixEntry</a>(const fourdst::atomic::Species &amp;species, const reaction::Reaction &amp;reaction) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14">isStale</a>(const gridfire::NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03">m_species_cache</a></td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac">mapNetInToMolarAbundanceVector</a>(const gridfire::NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878">primeEngine</a>(const gridfire::NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#a3d30a9116825ab2c5c209bc2712126bc">rebuild</a>(const fourdst::composition::Composition &amp;comp, gridfire::BuildDepthType depth) override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#af469cba3be850d53f659ec173f0eb4e4">setNetworkReactions</a>(const gridfire::reaction::ReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac">setScreeningModel</a>(gridfire::screening::ScreeningType model) override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8">update</a>(const gridfire::NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/class_py_dynamic_engine.html b/docs/html/class_py_dynamic_engine.html
index d2d02dab..f0512c43 100644
--- a/docs/html/class_py_dynamic_engine.html
+++ b/docs/html/class_py_dynamic_engine.html
@@ -125,32 +125,26 @@ Public Member Functions</h2></td></tr>
 <tr class="memdesc:afc745e7ab5da5d8b3cf916044515cd7d"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a> Implementation ///.  <br /></td></tr>
 <tr class="separator:afc745e7ab5da5d8b3cf916044515cd7d"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a5b7f0cfe327c634ec125303256de8b9a" id="r_a5b7f0cfe327c634ec125303256de8b9a"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">gridfire::expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5b7f0cfe327c634ec125303256de8b9a">calculateRHSAndEnergy</a> (const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
-<tr class="memdesc:a5b7f0cfe327c634ec125303256de8b9a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the right-hand side (dY/dt) and energy generation.  <br /></td></tr>
 <tr class="separator:a5b7f0cfe327c634ec125303256de8b9a"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a5bd40c752db1badcd600797c9113121d" id="r_a5bd40c752db1badcd600797c9113121d"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5bd40c752db1badcd600797c9113121d">generateJacobianMatrix</a> (const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho) const override</td></tr>
-<tr class="memdesc:a5bd40c752db1badcd600797c9113121d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate the Jacobian matrix for the current state.  <br /></td></tr>
 <tr class="separator:a5bd40c752db1badcd600797c9113121d"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:aa0f1fd3f0c0185395193d1b6897d64c5" id="r_aa0f1fd3f0c0185395193d1b6897d64c5"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa0f1fd3f0c0185395193d1b6897d64c5">generateJacobianMatrix</a> (const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const <a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">gridfire::SparsityPattern</a> &amp;sparsityPattern) const override</td></tr>
 <tr class="separator:aa0f1fd3f0c0185395193d1b6897d64c5"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a1c888bbc0618f1ae02d9a53e45f3c159" id="r_a1c888bbc0618f1ae02d9a53e45f3c159"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1c888bbc0618f1ae02d9a53e45f3c159">getJacobianMatrixEntry</a> (int i, int j) const override</td></tr>
-<tr class="memdesc:a1c888bbc0618f1ae02d9a53e45f3c159"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get an entry from the previously generated Jacobian matrix.  <br /></td></tr>
 <tr class="separator:a1c888bbc0618f1ae02d9a53e45f3c159"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a2066649ca11a869c054079ea12d8d0e9" id="r_a2066649ca11a869c054079ea12d8d0e9"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2066649ca11a869c054079ea12d8d0e9">generateStoichiometryMatrix</a> () override</td></tr>
 <tr class="memdesc:a2066649ca11a869c054079ea12d8d0e9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate the stoichiometry matrix for the network.  <br /></td></tr>
 <tr class="separator:a2066649ca11a869c054079ea12d8d0e9"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:ab48ef6db18da20024aa563a91fa16f83" id="r_ab48ef6db18da20024aa563a91fa16f83"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab48ef6db18da20024aa563a91fa16f83">getStoichiometryMatrixEntry</a> (int speciesIndex, int reactionIndex) const override</td></tr>
-<tr class="memdesc:ab48ef6db18da20024aa563a91fa16f83"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get an entry from the stoichiometry matrix.  <br /></td></tr>
 <tr class="separator:ab48ef6db18da20024aa563a91fa16f83"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a6224f546ba66b1257506b1fc9f47195a" id="r_a6224f546ba66b1257506b1fc9f47195a"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6224f546ba66b1257506b1fc9f47195a">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a> &amp;reaction, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
-<tr class="memdesc:a6224f546ba66b1257506b1fc9f47195a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the molar reaction flow for a given reaction.  <br /></td></tr>
 <tr class="separator:a6224f546ba66b1257506b1fc9f47195a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5988cfba247631ba6c00795cafda9a38" id="r_a5988cfba247631ba6c00795cafda9a38"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5988cfba247631ba6c00795cafda9a38">getNetworkReactions</a> () const override</td></tr>
-<tr class="memdesc:a5988cfba247631ba6c00795cafda9a38"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the set of logical reactions in the network.  <br /></td></tr>
-<tr class="separator:a5988cfba247631ba6c00795cafda9a38"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afd818c408c64d207e71b1a90426328d6" id="r_afd818c408c64d207e71b1a90426328d6"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afd818c408c64d207e71b1a90426328d6">setNetworkReactions</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a> &amp;reactions) override</td></tr>
-<tr class="separator:afd818c408c64d207e71b1a90426328d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1d5143640666631501cf229bc491516e" id="r_a1d5143640666631501cf229bc491516e"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1d5143640666631501cf229bc491516e">getNetworkReactions</a> () const override</td></tr>
+<tr class="memdesc:a1d5143640666631501cf229bc491516e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the set of logical reactions in the network.  <br /></td></tr>
+<tr class="separator:a1d5143640666631501cf229bc491516e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af469cba3be850d53f659ec173f0eb4e4" id="r_af469cba3be850d53f659ec173f0eb4e4"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af469cba3be850d53f659ec173f0eb4e4">setNetworkReactions</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a> &amp;reactions) override</td></tr>
+<tr class="separator:af469cba3be850d53f659ec173f0eb4e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a02a4c86c9637a3c9c9ca8ddd82ecff22" id="r_a02a4c86c9637a3c9c9ca8ddd82ecff22"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">gridfire::expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a02a4c86c9637a3c9c9ca8ddd82ecff22">getSpeciesTimescales</a> (const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
-<tr class="memdesc:a02a4c86c9637a3c9c9ca8ddd82ecff22"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute timescales for all species in the network.  <br /></td></tr>
 <tr class="separator:a02a4c86c9637a3c9c9ca8ddd82ecff22"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a020044829e0146427ed4830e5b02c4f3" id="r_a020044829e0146427ed4830e5b02c4f3"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">gridfire::expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a020044829e0146427ed4830e5b02c4f3">getSpeciesDestructionTimescales</a> (const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
 <tr class="separator:a020044829e0146427ed4830e5b02c4f3"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -165,9 +159,9 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:ab4cfdca5e15957c5cef75ffa6dedeee5" id="r_ab4cfdca5e15957c5cef75ffa6dedeee5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening::ScreeningType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab4cfdca5e15957c5cef75ffa6dedeee5">getScreeningModel</a> () const override</td></tr>
 <tr class="memdesc:ab4cfdca5e15957c5cef75ffa6dedeee5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the current electron screening model.  <br /></td></tr>
 <tr class="separator:ab4cfdca5e15957c5cef75ffa6dedeee5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2ee1d745c1c21b9fcb652c96c42f1091" id="r_a2ee1d745c1c21b9fcb652c96c42f1091"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2ee1d745c1c21b9fcb652c96c42f1091">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
-<tr class="memdesc:a2ee1d745c1c21b9fcb652c96c42f1091"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the index of a species in the network.  <br /></td></tr>
-<tr class="separator:a2ee1d745c1c21b9fcb652c96c42f1091"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a95d10a7b240d543a1bc6c67ddf2dc8e0" id="r_a95d10a7b240d543a1bc6c67ddf2dc8e0"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a95d10a7b240d543a1bc6c67ddf2dc8e0">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a95d10a7b240d543a1bc6c67ddf2dc8e0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the index of a species in the network.  <br /></td></tr>
+<tr class="separator:a95d10a7b240d543a1bc6c67ddf2dc8e0"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a61bb4b430fe740cfb2c24e5cc673e4ac" id="r_a61bb4b430fe740cfb2c24e5cc673e4ac"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a61bb4b430fe740cfb2c24e5cc673e4ac">mapNetInToMolarAbundanceVector</a> (const <a class="el" href="structgridfire_1_1_net_in.html">gridfire::NetIn</a> &amp;netIn) const override</td></tr>
 <tr class="memdesc:a61bb4b430fe740cfb2c24e5cc673e4ac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map a NetIn object to a vector of molar abundances.  <br /></td></tr>
 <tr class="separator:a61bb4b430fe740cfb2c24e5cc673e4ac"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -180,10 +174,36 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:a3d30a9116825ab2c5c209bc2712126bc" id="r_a3d30a9116825ab2c5c209bc2712126bc"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3d30a9116825ab2c5c209bc2712126bc">rebuild</a> (const fourdst::composition::Composition &amp;comp, <a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">gridfire::BuildDepthType</a> depth) override</td></tr>
 <tr class="memdesc:a3d30a9116825ab2c5c209bc2712126bc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Rebuild the network with a specified depth.  <br /></td></tr>
 <tr class="separator:a3d30a9116825ab2c5c209bc2712126bc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1_dynamic_engine"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1_dynamic_engine')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td></tr>
+<tr class="memitem:a21d15531309456ee83f7675251e7a1bf inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a21d15531309456ee83f7675251e7a1bf"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a21d15531309456ee83f7675251e7a1bf">generateJacobianMatrix</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:a21d15531309456ee83f7675251e7a1bf inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate the Jacobian matrix for the current state.  <br /></td></tr>
+<tr class="separator:a21d15531309456ee83f7675251e7a1bf inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a11d602a708af4629f51873b17f7b8dbd inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a11d602a708af4629f51873b17f7b8dbd"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd">generateJacobianMatrix</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho, const <a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">SparsityPattern</a> &amp;sparsityPattern) const</td></tr>
+<tr class="separator:a11d602a708af4629f51873b17f7b8dbd inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a88dbf350dc0ea3e2b64d825f489e0d60 inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a88dbf350dc0ea3e2b64d825f489e0d60"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a88dbf350dc0ea3e2b64d825f489e0d60">getJacobianMatrixEntry</a> (const fourdst::atomic::Species &amp;rowSpecies, const fourdst::atomic::Species &amp;colSpecies) const =0</td></tr>
+<tr class="memdesc:a88dbf350dc0ea3e2b64d825f489e0d60 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get an entry from the previously generated Jacobian matrix.  <br /></td></tr>
+<tr class="separator:a88dbf350dc0ea3e2b64d825f489e0d60 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad19c8451b6f624e2938f771cc067d5c1 inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_ad19c8451b6f624e2938f771cc067d5c1"><td class="memItemLeft" align="right" valign="top">virtual int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#ad19c8451b6f624e2938f771cc067d5c1">getStoichiometryMatrixEntry</a> (const fourdst::atomic::Species &amp;species, const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction) const =0</td></tr>
+<tr class="memdesc:ad19c8451b6f624e2938f771cc067d5c1 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get an entry from the stoichiometry matrix.  <br /></td></tr>
+<tr class="separator:ad19c8451b6f624e2938f771cc067d5c1 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a39cf5b738eea0a275bf8c0eb5789fab3 inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a39cf5b738eea0a275bf8c0eb5789fab3"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a39cf5b738eea0a275bf8c0eb5789fab3">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:a39cf5b738eea0a275bf8c0eb5789fab3 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the molar reaction flow for a given reaction.  <br /></td></tr>
+<tr class="separator:a39cf5b738eea0a275bf8c0eb5789fab3 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a264bd5a8891c8c5f0dff32867effe547 inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a264bd5a8891c8c5f0dff32867effe547"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a264bd5a8891c8c5f0dff32867effe547">calculateEpsDerivatives</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:a264bd5a8891c8c5f0dff32867effe547 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the derivatives of the energy generation rate with respect to T and rho.  <br /></td></tr>
+<tr class="separator:a264bd5a8891c8c5f0dff32867effe547 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae7114f5ebc6667b5e5971c0450ed03d9 inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_ae7114f5ebc6667b5e5971c0450ed03d9"><td class="memItemLeft" align="right" valign="top">virtual std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#ae7114f5ebc6667b5e5971c0450ed03d9">getSpeciesTimescales</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:ae7114f5ebc6667b5e5971c0450ed03d9 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute timescales for all species in the network.  <br /></td></tr>
+<tr class="separator:ae7114f5ebc6667b5e5971c0450ed03d9 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a25c040d3078f6ff2ef38f733eb68f1fa inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a25c040d3078f6ff2ef38f733eb68f1fa"><td class="memItemLeft" align="right" valign="top">virtual std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a25c040d3078f6ff2ef38f733eb68f1fa">getSpeciesDestructionTimescales</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="separator:a25c040d3078f6ff2ef38f733eb68f1fa inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="inherit_header pub_methods_classgridfire_1_1_engine"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1_engine')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td></tr>
 <tr class="memitem:a2e7970bed2100699f226f4141d5db037 inherit pub_methods_classgridfire_1_1_engine" id="r_a2e7970bed2100699f226f4141d5db037"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a> ()=default</td></tr>
 <tr class="memdesc:a2e7970bed2100699f226f4141d5db037 inherit pub_methods_classgridfire_1_1_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
 <tr class="separator:a2e7970bed2100699f226f4141d5db037 inherit pub_methods_classgridfire_1_1_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:add48d3af9ebde17717e42e220e349740 inherit pub_methods_classgridfire_1_1_engine" id="r_add48d3af9ebde17717e42e220e349740"><td class="memItemLeft" align="right" valign="top">virtual std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740">calculateRHSAndEnergy</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:add48d3af9ebde17717e42e220e349740 inherit pub_methods_classgridfire_1_1_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the right-hand side (dY/dt) and energy generation.  <br /></td></tr>
+<tr class="separator:add48d3af9ebde17717e42e220e349740 inherit pub_methods_classgridfire_1_1_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
 Private Attributes</h2></td></tr>
@@ -223,26 +243,11 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel override">override</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Calculate the molar reaction flow for a given reaction. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the flow. </td></tr>
-    <tr><td class="paramname">Y</td><td>Vector of current abundances. </td></tr>
-    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
-    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Molar flow rate for the reaction (e.g., mol/g/s).</dd></dl>
-<p>This method computes the net rate at which the given reaction proceeds under the current state. </p>
-
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785">gridfire::DynamicEngine</a>.</p>
-
 </div>
 </div>
 <a id="a5b7f0cfe327c634ec125303256de8b9a" name="a5b7f0cfe327c634ec125303256de8b9a"></a>
@@ -272,25 +277,11 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel override">override</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Calculate the right-hand side (dY/dt) and energy generation. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">Y</td><td>Vector of current abundances for all species. </td></tr>
-    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
-    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>StepDerivatives&lt;double&gt; containing dY/dt and energy generation rate.</dd></dl>
-<p>This function must be implemented by derived classes to compute the time derivatives of all species and the specific nuclear energy generation rate for the current state. </p>
-
-<p>Implements <a class="el" href="classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb">gridfire::Engine</a>.</p>
-
 </div>
 </div>
 <a id="a5bd40c752db1badcd600797c9113121d" name="a5bd40c752db1badcd600797c9113121d"></a>
@@ -320,24 +311,11 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel override">override</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Generate the Jacobian matrix for the current state. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">Y_dynamic</td><td>Vector of current abundances. </td></tr>
-    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
-    <tr><td class="paramname">rho</td><td>Density in g/cm^3.</td></tr>
-  </table>
-  </dd>
-</dl>
-<p>This method must compute and store the Jacobian matrix (∂(dY/dt)_i/∂Y_j) for the current state. The matrix can then be accessed via <a class="el" href="#a1c888bbc0618f1ae02d9a53e45f3c159" title="Get an entry from the previously generated Jacobian matrix.">getJacobianMatrixEntry()</a>. </p>
-
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d">gridfire::DynamicEngine</a>.</p>
-
 </div>
 </div>
 <a id="aa0f1fd3f0c0185395193d1b6897d64c5" name="aa0f1fd3f0c0185395193d1b6897d64c5"></a>
@@ -372,13 +350,11 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel override">override</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Reimplemented from <a class="el" href="classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7">gridfire::DynamicEngine</a>.</p>
-
 </div>
 </div>
 <a id="a2066649ca11a869c054079ea12d8d0e9" name="a2066649ca11a869c054079ea12d8d0e9"></a>
@@ -464,28 +440,15 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel override">override</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Get an entry from the previously generated Jacobian matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">i</td><td>Row index (species index). </td></tr>
-    <tr><td class="paramname">j</td><td>Column index (species index). </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Value of the Jacobian matrix at (i, j).</dd></dl>
-<p>The Jacobian must have been generated by <a class="el" href="#a5bd40c752db1badcd600797c9113121d" title="Generate the Jacobian matrix for the current state.">generateJacobianMatrix()</a> before calling this. </p>
-
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07">gridfire::DynamicEngine</a>.</p>
-
 </div>
 </div>
-<a id="a5988cfba247631ba6c00795cafda9a38" name="a5988cfba247631ba6c00795cafda9a38"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5988cfba247631ba6c00795cafda9a38">&#9670;&#160;</a></span>getNetworkReactions()</h2>
+<a id="a1d5143640666631501cf229bc491516e" name="a1d5143640666631501cf229bc491516e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1d5143640666631501cf229bc491516e">&#9670;&#160;</a></span>getNetworkReactions()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -494,7 +457,7 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a> &amp; PyDynamicEngine::getNetworkReactions </td>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a> &amp; PyDynamicEngine::getNetworkReactions </td>
           <td>(</td>
           <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
           <td> const</td>
@@ -510,7 +473,7 @@ Private Attributes</h2></td></tr>
 <p>Get the set of logical reactions in the network. </p>
 <dl class="section return"><dt>Returns</dt><dd>Reference to the LogicalReactionSet containing all reactions. </dd></dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#af496e04f7be9a0a51ac65dc95f901ffe">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -602,17 +565,15 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel override">override</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6">gridfire::DynamicEngine</a>.</p>
-
 </div>
 </div>
-<a id="a2ee1d745c1c21b9fcb652c96c42f1091" name="a2ee1d745c1c21b9fcb652c96c42f1091"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2ee1d745c1c21b9fcb652c96c42f1091">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
+<a id="a95d10a7b240d543a1bc6c67ddf2dc8e0" name="a95d10a7b240d543a1bc6c67ddf2dc8e0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a95d10a7b240d543a1bc6c67ddf2dc8e0">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -621,7 +582,7 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">int PyDynamicEngine::getSpeciesIndex </td>
+          <td class="memname">size_t PyDynamicEngine::getSpeciesIndex </td>
           <td>(</td>
           <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
           <td> const</td>
@@ -643,7 +604,7 @@ Private Attributes</h2></td></tr>
 </dl>
 <p>This method allows querying the index of a specific species in the engine's internal representation. It is useful for accessing species data efficiently. </p>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a8f66fb76c9f983ee93bf8b95cdc85596">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -674,25 +635,11 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel override">override</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Compute timescales for all species in the network. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">Y</td><td>Vector of current abundances. </td></tr>
-    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
-    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Map from Species to their characteristic timescales (s).</dd></dl>
-<p>This method estimates the timescale for abundance change of each species, which can be used for timestep control, diagnostics, and reaction network culling. </p>
-
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813">gridfire::DynamicEngine</a>.</p>
-
 </div>
 </div>
 <a id="ab48ef6db18da20024aa563a91fa16f83" name="ab48ef6db18da20024aa563a91fa16f83"></a>
@@ -717,24 +664,11 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel override">override</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Get an entry from the stoichiometry matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">speciesIndex</td><td>Index of the species. </td></tr>
-    <tr><td class="paramname">reactionIndex</td><td>Index of the reaction. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Stoichiometric coefficient for the species in the reaction.</dd></dl>
-<p>The stoichiometry matrix must have been generated by <a class="el" href="#a2066649ca11a869c054079ea12d8d0e9" title="Generate the stoichiometry matrix for the network.">generateStoichiometryMatrix()</a>. </p>
-
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f">gridfire::DynamicEngine</a>.</p>
-
 </div>
 </div>
 <a id="a55bf19ed7534a312a36faf74753f7b14" name="a55bf19ed7534a312a36faf74753f7b14"></a>
@@ -879,8 +813,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="afd818c408c64d207e71b1a90426328d6" name="afd818c408c64d207e71b1a90426328d6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afd818c408c64d207e71b1a90426328d6">&#9670;&#160;</a></span>setNetworkReactions()</h2>
+<a id="af469cba3be850d53f659ec173f0eb4e4" name="af469cba3be850d53f659ec173f0eb4e4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af469cba3be850d53f659ec173f0eb4e4">&#9670;&#160;</a></span>setNetworkReactions()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -891,7 +825,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">void PyDynamicEngine::setNetworkReactions </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -902,7 +836,7 @@ Private Attributes</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a49025489901e22a20cdf99b455ff2ff0">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
diff --git a/docs/html/class_py_dynamic_engine.js b/docs/html/class_py_dynamic_engine.js
index b8e14314..eaed4396 100644
--- a/docs/html/class_py_dynamic_engine.js
+++ b/docs/html/class_py_dynamic_engine.js
@@ -7,18 +7,18 @@ var class_py_dynamic_engine =
     [ "generateStoichiometryMatrix", "class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9", null ],
     [ "getDepth", "class_py_dynamic_engine.html#adba68716d832b6100e08d32fbc36f13c", null ],
     [ "getJacobianMatrixEntry", "class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159", null ],
-    [ "getNetworkReactions", "class_py_dynamic_engine.html#a5988cfba247631ba6c00795cafda9a38", null ],
+    [ "getNetworkReactions", "class_py_dynamic_engine.html#a1d5143640666631501cf229bc491516e", null ],
     [ "getNetworkSpecies", "class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d", null ],
     [ "getScreeningModel", "class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5", null ],
     [ "getSpeciesDestructionTimescales", "class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3", null ],
-    [ "getSpeciesIndex", "class_py_dynamic_engine.html#a2ee1d745c1c21b9fcb652c96c42f1091", null ],
+    [ "getSpeciesIndex", "class_py_dynamic_engine.html#a95d10a7b240d543a1bc6c67ddf2dc8e0", null ],
     [ "getSpeciesTimescales", "class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22", null ],
     [ "getStoichiometryMatrixEntry", "class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83", null ],
     [ "isStale", "class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14", null ],
     [ "mapNetInToMolarAbundanceVector", "class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac", null ],
     [ "primeEngine", "class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878", null ],
     [ "rebuild", "class_py_dynamic_engine.html#a3d30a9116825ab2c5c209bc2712126bc", null ],
-    [ "setNetworkReactions", "class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6", null ],
+    [ "setNetworkReactions", "class_py_dynamic_engine.html#af469cba3be850d53f659ec173f0eb4e4", null ],
     [ "setScreeningModel", "class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac", null ],
     [ "update", "class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8", null ],
     [ "m_species_cache", "class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03", null ]
diff --git a/docs/html/class_py_dynamic_network_solver_strategy.html b/docs/html/class_py_dynamic_network_solver_strategy.html
index 2f5b2872..b2dbe394 100644
--- a/docs/html/class_py_dynamic_network_solver_strategy.html
+++ b/docs/html/class_py_dynamic_network_solver_strategy.html
@@ -199,7 +199,7 @@ Additional Inherited Members</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel private">private</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel private">private</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
diff --git a/docs/html/class_py_engine-members.html b/docs/html/class_py_engine-members.html
index 96765099..3b8dd93a 100644
--- a/docs/html/class_py_engine-members.html
+++ b/docs/html/class_py_engine-members.html
@@ -105,10 +105,11 @@ $(function(){initNavTree('class_py_engine.html',''); initResizable(true); });
 
 <p>This is the complete list of members for <a class="el" href="class_py_engine.html">PyEngine</a>, including all inherited members.</p>
 <table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d">calculateRHSAndEnergy</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="class_py_engine.html">PyEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="class_py_engine.html#a2d240423899e039c2ca688e96f8af1f2">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="class_py_engine.html">PyEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="class_py_engine.html#a73caaa7606e2cdfd1aa82729a78ebb73">m_species_cache</a></td><td class="entry"><a class="el" href="class_py_engine.html">PyEngine</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d">calculateRHSAndEnergy</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="class_py_engine.html">PyEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740">gridfire::Engine::calculateRHSAndEnergy</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_py_engine.html#a2d240423899e039c2ca688e96f8af1f2">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="class_py_engine.html">PyEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="class_py_engine.html#a73caaa7606e2cdfd1aa82729a78ebb73">m_species_cache</a></td><td class="entry"><a class="el" href="class_py_engine.html">PyEngine</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/class_py_engine.html b/docs/html/class_py_engine.html
index cce40ea5..9aec10e6 100644
--- a/docs/html/class_py_engine.html
+++ b/docs/html/class_py_engine.html
@@ -124,12 +124,14 @@ Public Member Functions</h2></td></tr>
 <tr class="memdesc:a2d240423899e039c2ca688e96f8af1f2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the list of species in the network.  <br /></td></tr>
 <tr class="separator:a2d240423899e039c2ca688e96f8af1f2"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a2f92602ecf210414b46838fc0a9ae26d" id="r_a2f92602ecf210414b46838fc0a9ae26d"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">gridfire::expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2f92602ecf210414b46838fc0a9ae26d">calculateRHSAndEnergy</a> (const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
-<tr class="memdesc:a2f92602ecf210414b46838fc0a9ae26d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the right-hand side (dY/dt) and energy generation.  <br /></td></tr>
 <tr class="separator:a2f92602ecf210414b46838fc0a9ae26d"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="inherit_header pub_methods_classgridfire_1_1_engine"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1_engine')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td></tr>
 <tr class="memitem:a2e7970bed2100699f226f4141d5db037 inherit pub_methods_classgridfire_1_1_engine" id="r_a2e7970bed2100699f226f4141d5db037"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a> ()=default</td></tr>
 <tr class="memdesc:a2e7970bed2100699f226f4141d5db037 inherit pub_methods_classgridfire_1_1_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
 <tr class="separator:a2e7970bed2100699f226f4141d5db037 inherit pub_methods_classgridfire_1_1_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:add48d3af9ebde17717e42e220e349740 inherit pub_methods_classgridfire_1_1_engine" id="r_add48d3af9ebde17717e42e220e349740"><td class="memItemLeft" align="right" valign="top">virtual std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740">calculateRHSAndEnergy</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:add48d3af9ebde17717e42e220e349740 inherit pub_methods_classgridfire_1_1_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the right-hand side (dY/dt) and energy generation.  <br /></td></tr>
+<tr class="separator:add48d3af9ebde17717e42e220e349740 inherit pub_methods_classgridfire_1_1_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
 Private Attributes</h2></td></tr>
@@ -164,25 +166,11 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel override">override</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Calculate the right-hand side (dY/dt) and energy generation. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">Y</td><td>Vector of current abundances for all species. </td></tr>
-    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
-    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>StepDerivatives&lt;double&gt; containing dY/dt and energy generation rate.</dd></dl>
-<p>This function must be implemented by derived classes to compute the time derivatives of all species and the specific nuclear energy generation rate for the current state. </p>
-
-<p>Implements <a class="el" href="classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb">gridfire::Engine</a>.</p>
-
 </div>
 </div>
 <a id="a2d240423899e039c2ca688e96f8af1f2" name="a2d240423899e039c2ca688e96f8af1f2"></a>
diff --git a/docs/html/class_py_partition_function.html b/docs/html/class_py_partition_function.html
index 2749e35c..bbc6c1c7 100644
--- a/docs/html/class_py_partition_function.html
+++ b/docs/html/class_py_partition_function.html
@@ -131,7 +131,7 @@ Private Member Functions</h2></td></tr>
 <tr class="memitem:a07f4d0ff83822dd2800897161d2a3717" id="r_a07f4d0ff83822dd2800897161d2a3717"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a07f4d0ff83822dd2800897161d2a3717">type</a> () const override</td></tr>
 <tr class="memdesc:a07f4d0ff83822dd2800897161d2a3717"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the human-readable type of this partition function.  <br /></td></tr>
 <tr class="separator:a07f4d0ff83822dd2800897161d2a3717"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af918b357e38fb82499ad53584557c43d" id="r_af918b357e38fb82499ad53584557c43d"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html">gridfire::partition::PartitionFunction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af918b357e38fb82499ad53584557c43d">clone</a> () const override</td></tr>
+<tr class="memitem:af918b357e38fb82499ad53584557c43d" id="r_af918b357e38fb82499ad53584557c43d"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; PartitionFunction &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af918b357e38fb82499ad53584557c43d">clone</a> () const override</td></tr>
 <tr class="memdesc:af918b357e38fb82499ad53584557c43d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Create a deep copy of this PartitionFunction.  <br /></td></tr>
 <tr class="separator:af918b357e38fb82499ad53584557c43d"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
@@ -161,7 +161,7 @@ Additional Inherited Members</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel private">private</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel private">private</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -201,7 +201,7 @@ Additional Inherited Members</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel private">private</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel private">private</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -250,7 +250,7 @@ Additional Inherited Members</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel private">private</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel private">private</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -295,7 +295,7 @@ Additional Inherited Members</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel private">private</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel private">private</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -333,7 +333,7 @@ Additional Inherited Members</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel private">private</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel private">private</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
diff --git a/docs/html/class_py_screening-members.html b/docs/html/class_py_screening-members.html
index d41827f3..2f2a4a81 100644
--- a/docs/html/class_py_screening-members.html
+++ b/docs/html/class_py_screening-members.html
@@ -106,8 +106,8 @@ $(function(){initNavTree('class_py_screening.html',''); initResizable(true); });
 <p>This is the complete list of members for <a class="el" href="class_py_screening.html">PyScreening</a>, including all inherited members.</p>
 <table class="directory">
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="class_py_screening.html#a2b8756c197eb89e77cb6dd231c979315">calculateScreeningFactors</a>(const gridfire::reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="class_py_screening.html">PyScreening</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="class_py_screening.html#a5539d59311c778cf7f0006acc8f84ade">calculateScreeningFactors</a>(const gridfire::reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; ADDouble &gt; &amp;Y, const ADDouble T9, const ADDouble rho) const override</td><td class="entry"><a class="el" href="class_py_screening.html">PyScreening</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="class_py_screening.html#aa67b5f0528006d9c742033b8c5ab3a05">calculateScreeningFactors</a>(const gridfire::reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="class_py_screening.html">PyScreening</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="class_py_screening.html#a68a126de903e1a87a1d7d1cfec8add0f">calculateScreeningFactors</a>(const gridfire::reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; ADDouble &gt; &amp;Y, ADDouble T9, ADDouble rho) const override</td><td class="entry"><a class="el" href="class_py_screening.html">PyScreening</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">virtual</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/class_py_screening.html b/docs/html/class_py_screening.html
index 41e8ceac..fa7ae1e3 100644
--- a/docs/html/class_py_screening.html
+++ b/docs/html/class_py_screening.html
@@ -119,12 +119,12 @@ Inheritance diagram for PyScreening:</div>
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
 Private Member Functions</h2></td></tr>
-<tr class="memitem:a2b8756c197eb89e77cb6dd231c979315" id="r_a2b8756c197eb89e77cb6dd231c979315"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2b8756c197eb89e77cb6dd231c979315">calculateScreeningFactors</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:a2b8756c197eb89e77cb6dd231c979315"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors for a set of reactions.  <br /></td></tr>
-<tr class="separator:a2b8756c197eb89e77cb6dd231c979315"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5539d59311c778cf7f0006acc8f84ade" id="r_a5539d59311c778cf7f0006acc8f84ade"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5539d59311c778cf7f0006acc8f84ade">calculateScreeningFactors</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; &amp;Y, const <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> T9, const <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> rho) const override</td></tr>
-<tr class="memdesc:a5539d59311c778cf7f0006acc8f84ade"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors using CppAD types for automatic differentiation.  <br /></td></tr>
-<tr class="separator:a5539d59311c778cf7f0006acc8f84ade"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa67b5f0528006d9c742033b8c5ab3a05" id="r_aa67b5f0528006d9c742033b8c5ab3a05"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa67b5f0528006d9c742033b8c5ab3a05">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
+<tr class="memdesc:aa67b5f0528006d9c742033b8c5ab3a05"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors for a set of reactions.  <br /></td></tr>
+<tr class="separator:aa67b5f0528006d9c742033b8c5ab3a05"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a68a126de903e1a87a1d7d1cfec8add0f" id="r_a68a126de903e1a87a1d7d1cfec8add0f"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a68a126de903e1a87a1d7d1cfec8add0f">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; &amp;Y, <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> T9, <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> rho) const override</td></tr>
+<tr class="memdesc:a68a126de903e1a87a1d7d1cfec8add0f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors using CppAD types for automatic differentiation.  <br /></td></tr>
+<tr class="separator:a68a126de903e1a87a1d7d1cfec8add0f"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
 Additional Inherited Members</h2></td></tr>
@@ -138,8 +138,8 @@ Additional Inherited Members</h2></td></tr>
 <tr class="separator:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1_screening_model"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Member Function Documentation</h2>
-<a id="a5539d59311c778cf7f0006acc8f84ade" name="a5539d59311c778cf7f0006acc8f84ade"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5539d59311c778cf7f0006acc8f84ade">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[1/2]</span></h2>
+<a id="a68a126de903e1a87a1d7d1cfec8add0f" name="a68a126de903e1a87a1d7d1cfec8add0f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a68a126de903e1a87a1d7d1cfec8add0f">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[1/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -150,7 +150,7 @@ Additional Inherited Members</h2></td></tr>
         <tr>
           <td class="memname">std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; PyScreening::calculateScreeningFactors </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -165,17 +165,17 @@ Additional Inherited Members</h2></td></tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a></td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a></td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a></td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a></td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel private">private</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel private">private</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -186,7 +186,7 @@ Additional Inherited Members</h2></td></tr>
   <table class="params">
     <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
     <tr><td class="paramname">species</td><td>A vector of all atomic species involved in the network. </td></tr>
-    <tr><td class="paramname">Y</td><td>A vector of the molar abundances (mol/g) for each species, as AD types. </td></tr>
+    <tr><td class="paramname">Y</td><td>The current composition, providing molar abundances (mol/g) for each species. </td></tr>
     <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K, as an AD type. </td></tr>
     <tr><td class="paramname">rho</td><td>The plasma density in g/cm^3, as an AD type. </td></tr>
   </table>
@@ -195,12 +195,12 @@ Additional Inherited Members</h2></td></tr>
 <dl class="section return"><dt>Returns</dt><dd>A vector of screening factors (dimensionless), as AD types.</dd></dl>
 <p><b>Note</b> This method is essential for including the effects of screening in the Jacobian matrix of the reaction network. </p>
 
-<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22">gridfire::screening::ScreeningModel</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a1da8242c7591ab32453d1e0109999d6c">gridfire::screening::ScreeningModel</a>.</p>
 
 </div>
 </div>
-<a id="a2b8756c197eb89e77cb6dd231c979315" name="a2b8756c197eb89e77cb6dd231c979315"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2b8756c197eb89e77cb6dd231c979315">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[2/2]</span></h2>
+<a id="aa67b5f0528006d9c742033b8c5ab3a05" name="aa67b5f0528006d9c742033b8c5ab3a05"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa67b5f0528006d9c742033b8c5ab3a05">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[2/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -211,7 +211,7 @@ Additional Inherited Members</h2></td></tr>
         <tr>
           <td class="memname">std::vector&lt; double &gt; PyScreening::calculateScreeningFactors </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -226,17 +226,17 @@ Additional Inherited Members</h2></td></tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel private">private</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel private">private</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -247,7 +247,7 @@ Additional Inherited Members</h2></td></tr>
   <table class="params">
     <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
     <tr><td class="paramname">species</td><td>A vector of all atomic species involved in the network. </td></tr>
-    <tr><td class="paramname">Y</td><td>A vector of the molar abundances (mol/g) for each species. </td></tr>
+    <tr><td class="paramname">Y</td><td>The current composition, providing molar abundances (mol/g) for each species. </td></tr>
     <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>The plasma density in g/cm^3. </td></tr>
   </table>
@@ -271,7 +271,7 @@ Additional Inherited Members</h2></td></tr>
 <div class="line">    <span class="comment">// ... use screening_factors[i] ...</span></div>
 <div class="line">}</div>
 </div><!-- fragment --> 
-<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde">gridfire::screening::ScreeningModel</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#ab08c4490f9da18254a7c6f29be1f62ce">gridfire::screening::ScreeningModel</a>.</p>
 
 </div>
 </div>
diff --git a/docs/html/class_py_screening.js b/docs/html/class_py_screening.js
index ea5c2f21..eb68bdbc 100644
--- a/docs/html/class_py_screening.js
+++ b/docs/html/class_py_screening.js
@@ -1,5 +1,5 @@
 var class_py_screening =
 [
-    [ "calculateScreeningFactors", "class_py_screening.html#a5539d59311c778cf7f0006acc8f84ade", null ],
-    [ "calculateScreeningFactors", "class_py_screening.html#a2b8756c197eb89e77cb6dd231c979315", null ]
+    [ "calculateScreeningFactors", "class_py_screening.html#a68a126de903e1a87a1d7d1cfec8add0f", null ],
+    [ "calculateScreeningFactors", "class_py_screening.html#aa67b5f0528006d9c742033b8c5ab3a05", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/class_solver_plugin_interface-members.html b/docs/html/class_solver_plugin_interface-members.html
new file mode 100644
index 00000000..3c5e9c42
--- /dev/null
+++ b/docs/html/class_solver_plugin_interface-members.html
@@ -0,0 +1,119 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('class_solver_plugin_interface.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">SolverPluginInterface Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="class_solver_plugin_interface.html">SolverPluginInterface</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="class_solver_plugin_interface.html#a493a30c0ae4b2e1a89b7d03c02c0041c">log_time</a>(double t, double dt)=0</td><td class="entry"><a class="el" href="class_solver_plugin_interface.html">SolverPluginInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="class_solver_plugin_interface.html#a5611d046cd2fd4d4200785725854e39b">~SolverPluginInterface</a>() override=default</td><td class="entry"><a class="el" href="class_solver_plugin_interface.html">SolverPluginInterface</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/class_solver_plugin_interface.html b/docs/html/class_solver_plugin_interface.html
new file mode 100644
index 00000000..90e6c33e
--- /dev/null
+++ b/docs/html/class_solver_plugin_interface.html
@@ -0,0 +1,193 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: SolverPluginInterface Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('class_solver_plugin_interface.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="class_solver_plugin_interface-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">SolverPluginInterface Class Reference<span class="mlabels"><span class="mlabel abstract">abstract</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;solver_interfaces.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for SolverPluginInterface:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="class_solver_plugin_interface.png" alt=""/>
+ </div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a5611d046cd2fd4d4200785725854e39b" id="r_a5611d046cd2fd4d4200785725854e39b"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5611d046cd2fd4d4200785725854e39b">~SolverPluginInterface</a> () override=default</td></tr>
+<tr class="separator:a5611d046cd2fd4d4200785725854e39b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a493a30c0ae4b2e1a89b7d03c02c0041c" id="r_a493a30c0ae4b2e1a89b7d03c02c0041c"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a493a30c0ae4b2e1a89b7d03c02c0041c">log_time</a> (double t, double dt)=0</td></tr>
+<tr class="separator:a493a30c0ae4b2e1a89b7d03c02c0041c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a5611d046cd2fd4d4200785725854e39b" name="a5611d046cd2fd4d4200785725854e39b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5611d046cd2fd4d4200785725854e39b">&#9670;&#160;</a></span>~SolverPluginInterface()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">SolverPluginInterface::~SolverPluginInterface </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel default">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a493a30c0ae4b2e1a89b7d03c02c0041c" name="a493a30c0ae4b2e1a89b7d03c02c0041c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a493a30c0ae4b2e1a89b7d03c02c0041c">&#9670;&#160;</a></span>log_time()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual void SolverPluginInterface::log_time </td>
+          <td>(</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>t</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>dt</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/interfaces/solver/<a class="el" href="solver__interfaces_8h.html">solver_interfaces.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="class_solver_plugin_interface.html">SolverPluginInterface</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/class_solver_plugin_interface.js b/docs/html/class_solver_plugin_interface.js
new file mode 100644
index 00000000..53ce8437
--- /dev/null
+++ b/docs/html/class_solver_plugin_interface.js
@@ -0,0 +1,5 @@
+var class_solver_plugin_interface =
+[
+    [ "~SolverPluginInterface", "class_solver_plugin_interface.html#a5611d046cd2fd4d4200785725854e39b", null ],
+    [ "log_time", "class_solver_plugin_interface.html#a493a30c0ae4b2e1a89b7d03c02c0041c", null ]
+];
\ No newline at end of file
diff --git a/docs/html/class_solver_plugin_interface.png b/docs/html/class_solver_plugin_interface.png
new file mode 100644
index 0000000000000000000000000000000000000000..a16988ba996cc60c2023b69ebad010a1d2b757f9
GIT binary patch
literal 707
zcmV;!0zCbRP)<h;3K|Lk000e1NJLTq005u>002-30{{R3se_IN0000RP)t-s|Ns90
z008Lh^>vTJr#LVva2S`&=-}Ys|Ns9r%~qrU000SeQchC<|NsC0|NsC0Hv*f~0006`
zNkl<ZcmeI5*|MWB3`AQm>HhyO9zwvoiHVpgSB>wbS!~HVSQ2@Knc2*Ok>tEufF$YB
z0whU~BA|6i!$fIOc~l1PziY$Ogd|%EfEPyNfF!eHH`q?!7QdQ50FO5f@B7hv?fty(
zZ+z8l>@W(pALB4p0rm_7;IaC74x!Q=tb-niH0DS8P>dOw9s`Eud?fe=m=6`XF5}i~
zXEoR}OlvR;bPq5|$1T7-auYB~aSRlxM*;I%{|kWaKwZGJS@MDlpQNfFzXCQ5Z`EMZ
zNwL9V7dJaF&R5Nl0d@_~Y`!n&*0j2qB!|`X8D8jC#D@TzKNlofYS{2$z$7Omd7)uL
z7a&RgBP~FZ^k@N+q(>W|nc2hwfJgNLfSENr;OjLx;p~7L-`s@L1FkLx0G}2h0C=<j
z0l=dL2ml@}KmhP)0Rn(W3lIQ2T7UrH(E<bjj}{;Rc(eckz@r5S03Q8+fM#Yh3noeP
zY5_`;M+;DrJn8_x+b4OFq)K~_wPxc$>+W=xqye=7_p$!!xzR<a?h@l^y8t|PDN^kE
zyt?iGVJgmsf#~?Y+ufq?vF!1jT_j~kH^l)oLr6#(fICEX$?gi@e9309Ts283uQp&_
zgVp8YE<=eGavQJ?TtJmUz5|xNpXU=W@5{j^sR0v%+kk~{;&jnA!+`PB-odK)zNXk!
zgXexHU%I1h&Q2_L<g9@14yIikQ+%ZUeiuv9Z+iNN=~2L5nk4C0J-dUQG)dC0dOXFF
p^rRM`Bzd#|CCQ@=(9CRN{Q)w)zOi#wHaP$Q002ovPDHLkV1i~`Kn4H+

literal 0
HcmV?d00001

diff --git a/docs/html/classes.html b/docs/html/classes.html
index b1caa380..b4a0db26 100644
--- a/docs/html/classes.html
+++ b/docs/html/classes.html
@@ -106,19 +106,19 @@ $(function(){initNavTree('classes.html',''); initResizable(true); });
 <div class="classindex">
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_A" name="letter_A">A</a></dt>
-<dd><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">AdaptiveEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html">Approx8Net</a> (<a class="el" href="namespacegridfire_1_1approx8.html">gridfire::approx8</a>)</dd><dd><a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html">Approx8Network</a> (<a class="el" href="namespacegridfire_1_1approx8.html">gridfire::approx8</a>)</dd><dd><a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html">GraphEngine::AtomicReverseRate</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
+<dd><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">AdaptiveEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">AndTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd><dd><a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html">Approx8Net</a> (<a class="el" href="namespacegridfire_1_1approx8.html">gridfire::approx8</a>)</dd><dd><a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html">Approx8Network</a> (<a class="el" href="namespacegridfire_1_1approx8.html">gridfire::approx8</a>)</dd><dd><a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html">GraphEngine::AtomicReverseRate</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html">WeakReaction::AtomicWeakRate</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd></dl>
 <dl class="classindex odd">
 <dt class="alphachar"><a id="letter_B" name="letter_B">B</a></dt>
-<dd><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">BareScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd></dl>
+<dd><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">BareScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html">BoundsErrorInfo</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd></dl>
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_C" name="letter_C">C</a></dt>
-<dd><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html">MultiscalePartitioningEngineView::CacheStats</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html">CompositePartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html">GraphEngine::constants</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
+<dd><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html">MultiscalePartitioningEngineView::CacheStats</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1utils_1_1_column.html">Column</a> (<a class="el" href="namespacegridfire_1_1utils.html">gridfire::utils</a>)</dd><dd><a class="el" href="classgridfire_1_1utils_1_1_column_base.html">ColumnBase</a> (<a class="el" href="namespacegridfire_1_1utils.html">gridfire::utils</a>)</dd><dd><a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html">CompositePartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html">GraphEngine::constants</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">WeakReaction::constants</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">CVODESolverStrategy::CVODEUserData</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd></dl>
 <dl class="classindex odd">
 <dt class="alphachar"><a id="letter_D" name="letter_D">D</a></dt>
-<dd><a class="el" href="classgridfire_1_1_defined_engine_view.html">DefinedEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html">DirectNetworkSolver</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
+<dd><a class="el" href="classgridfire_1_1_defined_engine_view.html">DefinedEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_E" name="letter_E">E</a></dt>
-<dd><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">MultiscalePartitioningEngineView::EigenFunctor</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1_engine.html">Engine</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_engine_error.html">EngineError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html">EngineError</a> (<a class="el" href="namespacegridfire_1_1expectations.html">gridfire::expectations</a>)</dd><dd><a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html">EngineIndexError</a> (<a class="el" href="namespacegridfire_1_1expectations.html">gridfire::expectations</a>)</dd><dd><a class="el" href="classgridfire_1_1_engine_view.html">EngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
+<dd><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">MultiscalePartitioningEngineView::EigenFunctor</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1_engine.html">Engine</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_engine_error.html">EngineError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html">EngineError</a> (<a class="el" href="namespacegridfire_1_1expectations.html">gridfire::expectations</a>)</dd><dd><a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html">EngineIndexError</a> (<a class="el" href="namespacegridfire_1_1expectations.html">gridfire::expectations</a>)</dd><dd><a class="el" href="classgridfire_1_1_engine_view.html">EngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">EveryNthTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd></dl>
 <dl class="classindex odd">
 <dt class="alphachar"><a id="letter_F" name="letter_F">F</a></dt>
 <dd><a class="el" href="classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html">FailedToPartitionEngineError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">FileDefinedEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
@@ -127,25 +127,25 @@ $(function(){initNavTree('classes.html',''); initResizable(true); });
 <dd><a class="el" href="classgridfire_1_1_graph_engine.html">GraphEngine</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html">GroundStatePartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd></dl>
 <dl class="classindex odd">
 <dt class="alphachar"><a id="letter_H" name="letter_H">H</a></dt>
-<dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html">hash&lt; gridfire::QSECacheKey &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html">hash&lt; gridfire::reaction::LogicalReactionSet &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html">hash&lt; gridfire::reaction::Reaction &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html">hash&lt; gridfire::reaction::ReactionSet &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd></dl>
+<dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html">hash&lt; gridfire::QSECacheKey &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html">hash&lt; gridfire::reaction::Reaction &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html">hash&lt; gridfire::reaction::ReactionSet &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd></dl>
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_I" name="letter_I">I</a></dt>
-<dd><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html">RauscherThielemannPartitionFunction::IdentifiedIsotope</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html">RauscherThielemannPartitionFunction::InterpolationPoints</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html">RauscherThielemannPartitionFunction::IsotopeData</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd></dl>
+<dd><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html">RauscherThielemannPartitionFunction::IdentifiedIsotope</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html">IntermediateScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html">InterpolationError</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html">RauscherThielemannPartitionFunction::InterpolationPoints</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html">RauscherThielemannPartitionFunction::IsotopeData</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html">IsotopeGrid</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd></dl>
 <dl class="classindex odd">
 <dt class="alphachar"><a id="letter_J" name="letter_J">J</a></dt>
-<dd><a class="el" href="structgridfire_1_1approx8_1_1_jacobian.html">Jacobian</a> (<a class="el" href="namespacegridfire_1_1approx8.html">gridfire::approx8</a>)</dd><dd><a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html">DirectNetworkSolver::JacobianFunctor</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd></dl>
+<dd><a class="el" href="structgridfire_1_1approx8_1_1_jacobian.html">Jacobian</a> (<a class="el" href="namespacegridfire_1_1approx8.html">gridfire::approx8</a>)</dd></dl>
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_L" name="letter_L">L</a></dt>
-<dd><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html">LogicalReaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd></dl>
+<dd><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">LogicalReaclibReaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1_logical_trigger.html">LogicalTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd></dl>
 <dl class="classindex odd">
 <dt class="alphachar"><a id="letter_M" name="letter_M">M</a></dt>
 <dd><a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html">MESANetworkFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">MultiscalePartitioningEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_N" name="letter_N">N</a></dt>
-<dd><a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_net_out.html">NetOut</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1_network.html">Network</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html">NetworkFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1_network_priming_engine_view.html">NetworkPrimingEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html">NetworkResizedError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">NetworkSolverStrategy</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd></dl>
+<dd><a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_net_out.html">NetOut</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1_network.html">Network</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html">NetworkFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1_network_priming_engine_view.html">NetworkPrimingEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html">NetworkResizedError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">NetworkSolverStrategy</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">NotTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd></dl>
 <dl class="classindex odd">
 <dt class="alphachar"><a id="letter_O" name="letter_O">O</a></dt>
-<dd><a class="el" href="structgridfire_1_1approx8_1_1_o_d_e.html">ODE</a> (<a class="el" href="namespacegridfire_1_1approx8.html">gridfire::approx8</a>)</dd></dl>
+<dd><a class="el" href="structgridfire_1_1approx8_1_1_o_d_e.html">ODE</a> (<a class="el" href="namespacegridfire_1_1approx8.html">gridfire::approx8</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">OffDiagonalTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">gridfire::trigger::solver::CVODE</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">OrTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd></dl>
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_P" name="letter_P">P</a></dt>
 <dd><a class="el" href="classgridfire_1_1partition_1_1_partition_function.html">PartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html">GraphEngine::PrecomputedReaction</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_priming_report.html">PrimingReport</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></dd><dd><a class="el" href="class_py_dynamic_engine_view.html">PyDynamicEngineView</a></dd><dd><a class="el" href="class_py_dynamic_network_solver_strategy.html">PyDynamicNetworkSolverStrategy</a></dd><dd><a class="el" href="class_py_engine.html">PyEngine</a></dd><dd><a class="el" href="class_py_engine_view.html">PyEngineView</a></dd><dd><a class="el" href="class_py_network_file_parser.html">PyNetworkFileParser</a></dd><dd><a class="el" href="class_py_partition_function.html">PyPartitionFunction</a></dd><dd><a class="el" href="class_py_screening.html">PyScreening</a></dd></dl>
@@ -154,19 +154,19 @@ $(function(){initNavTree('classes.html',''); initResizable(true); });
 <dd><a class="el" href="structgridfire_1_1_q_s_e_cache_config.html">QSECacheConfig</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_q_s_e_cache_key.html">QSECacheKey</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">MultiscalePartitioningEngineView::QSEGroup</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_R" name="letter_R">R</a></dt>
-<dd><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html">RauscherThielemannPartitionDataRecord</a> (<a class="el" href="namespacegridfire_1_1partition_1_1record.html">gridfire::partition::record</a>)</dd><dd><a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html">RauscherThielemannPartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="classgridfire_1_1_reaction.html">Reaction</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html">AdaptiveEngineView::ReactionFlow</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html">ReactionRecord</a> (<a class="el" href="namespacegridfire_1_1reaclib.html">gridfire::reaclib</a>)</dd><dd><a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html">DirectNetworkSolver::RHSManager</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd></dl>
+<dd><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">RateDataRow</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html">RauscherThielemannPartitionDataRecord</a> (<a class="el" href="namespacegridfire_1_1partition_1_1record.html">gridfire::partition::record</a>)</dd><dd><a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html">RauscherThielemannPartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1_reaction.html">Reaction</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html">AdaptiveEngineView::ReactionFlow</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html">ReactionRecord</a> (<a class="el" href="namespacegridfire_1_1reaclib.html">gridfire::reaclib</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1_reaction_set.html">ReactionSet</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
 <dl class="classindex odd">
 <dt class="alphachar"><a id="letter_S" name="letter_S">S</a></dt>
-<dd><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">ScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd><dd><a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html">SimpleReactionListFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="structgridfire_1_1solver_1_1_solver_context_base.html">SolverContextBase</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_error.html">StaleEngineError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">StaleEngineError</a> (<a class="el" href="namespacegridfire_1_1expectations.html">gridfire::expectations</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html">StaleEngineTrigger</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html">StaleEngineTrigger::state</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
+<dd><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">ScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd><dd><a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html">SimpleReactionListFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">SimulationTimeTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">gridfire::trigger::solver::CVODE</a>)</dd><dd><a class="el" href="structgridfire_1_1solver_1_1_solver_context_base.html">SolverContextBase</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="class_solver_plugin_interface.html">SolverPluginInterface</a></dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_error.html">StaleEngineError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">StaleEngineError</a> (<a class="el" href="namespacegridfire_1_1expectations.html">gridfire::expectations</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html">StaleEngineTrigger</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html">StaleEngineTrigger::state</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_T" name="letter_T">T</a></dt>
-<dd><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html">TemplatedReactionSet</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html">DirectNetworkSolver::TimestepContext</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd></dl>
+<dd><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">TimestepCollapseTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">gridfire::trigger::solver::CVODE</a>)</dd><dd><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">CVODESolverStrategy::TimestepContext</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd><dd><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd></dl>
 <dl class="classindex odd">
 <dt class="alphachar"><a id="letter_U" name="letter_U">U</a></dt>
 <dd><a class="el" href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html">UnableToSetNetworkReactionsError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd></dl>
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_W" name="letter_W">W</a></dt>
-<dd><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">WeakScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd></dl>
+<dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html">WeakRateDerivatives</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">WeakRateInterpolator</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">WeakRatePayload</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">WeakReaction</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html">WeakReactionMap</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">WeakScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd></dl>
 </div>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/classgridfire_1_1_adaptive_engine_view-members.html b/docs/html/classgridfire_1_1_adaptive_engine_view-members.html
index 8a2d6e8d..cf81946d 100644
--- a/docs/html/classgridfire_1_1_adaptive_engine_view-members.html
+++ b/docs/html/classgridfire_1_1_adaptive_engine_view-members.html
@@ -106,53 +106,54 @@ $(function(){initNavTree('classgridfire_1_1_adaptive_engine_view.html',''); init
 <p>This is the complete list of members for <a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a>, including all inherited members.</p>
 <table class="directory">
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455">AdaptiveEngineView</a>(DynamicEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#abdbaf4b87629efe43ac1255dad424c0c">calculateAllReactionFlows</a>(const NetIn &amp;netIn, std::vector&lt; double &gt; &amp;out_Y_Full) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const std::vector&lt; double &gt; &amp;Y_culled, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5">calculateRHSAndEnergy</a>(const std::vector&lt; double &gt; &amp;Y_culled, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3">Config</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c">constructReactionIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d">constructSpeciesIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08">cullReactionsByFlow</a>(const std::vector&lt; ReactionFlow &gt; &amp;allFlows, const std::unordered_set&lt; fourdst::atomic::Species &gt; &amp;reachableSpecies, const std::vector&lt; double &gt; &amp;Y_full, double maxFlow) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aa79fb382c98461b02a2c30668491e6c5">finalizeActiveSet</a>(const std::vector&lt; const reaction::LogicalReaction * &gt; &amp;finalReactions)</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b">findReachableSpecies</a>(const NetIn &amp;netIn) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a03fc187d3d306b9058103b9522cbbaeb">generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_dynamic, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7">gridfire::DynamicEngine::generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c">getBaseEngine</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58">getJacobianMatrixEntry</a>(const int i_culled, const int j_culled) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a522e78bce9ff062939572248d57f8cea">getSpeciesDestructionTimescales</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a9055feb245524a5a9549ace935f059ff">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9">getSpeciesTimescales</a>(const std::vector&lt; double &gt; &amp;Y_culled, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9">getStoichiometryMatrixEntry</a>(const int speciesIndex_culled, const int reactionIndex_culled) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88">isStale</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103">LogManager</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800">m_activeReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940">m_activeSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">m_baseEngine</a></td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30">m_config</a></td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e">m_isStale</a></td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de">m_reactionIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093">m_speciesIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1">mapCulledToFull</a>(const std::vector&lt; double &gt; &amp;culled) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101">mapCulledToFullReactionIndex</a>(size_t culledReactionIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8">mapCulledToFullSpeciesIndex</a>(size_t culledSpeciesIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44">mapFullToCulled</a>(const std::vector&lt; double &gt; &amp;full) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3">primeEngine</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf">rebuild</a>(const fourdst::composition::Composition &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f">rescueEdgeSpeciesDestructionChannel</a>(const std::vector&lt; double &gt; &amp;Y_full, const double T9, const double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies, const reaction::LogicalReactionSet &amp;activeReactions) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a4ff60b5214ec0bdaf683feb6615573a5">RescueSet</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672">setNetworkReactions</a>(const reaction::LogicalReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40">validateState</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html">gridfire::EngineView&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ab5397d217039f096acededd4d2779780">calculateAllReactionFlows</a>(const NetIn &amp;netIn) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a5d1b50afd2fba6af75e976a4f9c9dcbc">calculateEpsDerivatives</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a3c1e27b45051c4ba481a2b87513982ed">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac5545d546166de94514871d7ad7b8669">calculateRHSAndEnergy</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3">Config</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c">constructReactionIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d">constructSpeciesIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a95fbfb7f2bdbf80195f1ea0aff8d62fb">cullReactionsByFlow</a>(const std::vector&lt; ReactionFlow &gt; &amp;allFlows, const std::unordered_set&lt; fourdst::atomic::Species &gt; &amp;reachableSpecies, const fourdst::composition::Composition &amp;comp, double maxFlow) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a7b8b3a786b973e4383e721358e61b7ed">finalizeActiveSet</a>(const std::vector&lt; const reaction::Reaction * &gt; &amp;finalReactions)</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b">findReachableSpecies</a>(const NetIn &amp;netIn) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a8da7664cf483cba7f979f855a74c3559">generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd">gridfire::DynamicEngine::generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c">getBaseEngine</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#adf3b8a5734983509ca02b7a1a480119f">getJacobianMatrixEntry</a>(const fourdst::atomic::Species &amp;rowSpecies, const fourdst::atomic::Species &amp;colSpecies) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a3247c1e6a76de5622223ee7b5ca3452a">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aa861db5f6fc4e85fb51f524e4e1367c6">getSpeciesDestructionTimescales</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#abb811382522c31f6456787edd4f59ace">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a57a218c5a145f589531777c8615b7408">getSpeciesTimescales</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#abe2ca6426e10cc6a10090eecf7098dbe">getStoichiometryMatrixEntry</a>(const fourdst::atomic::Species &amp;species, const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88">isStale</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103">LogManager</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ab5ab06941bf6d97007d0a76658bf2aa6">m_activeReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940">m_activeSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">m_baseEngine</a></td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30">m_config</a></td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e">m_isStale</a></td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de">m_reactionIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093">m_speciesIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1">mapCulledToFull</a>(const std::vector&lt; double &gt; &amp;culled) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101">mapCulledToFullReactionIndex</a>(size_t culledReactionIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8">mapCulledToFullSpeciesIndex</a>(size_t culledSpeciesIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44">mapFullToCulled</a>(const std::vector&lt; double &gt; &amp;full) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3">primeEngine</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf">rebuild</a>(const fourdst::composition::Composition &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a0439f464865b4c01bad0f6be6055c3fc">rescueEdgeSpeciesDestructionChannel</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies, const reaction::ReactionSet &amp;activeReactions) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac674338ddcbae4c33dd84b0441631806">RescueSet</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#adedc8547568d643473bdfcc86040b488">setNetworkReactions</a>(const reaction::ReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40">validateState</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html">gridfire::EngineView&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/classgridfire_1_1_adaptive_engine_view.html b/docs/html/classgridfire_1_1_adaptive_engine_view.html
index 5ed469ce..ed80bb09 100644
--- a/docs/html/classgridfire_1_1_adaptive_engine_view.html
+++ b/docs/html/classgridfire_1_1_adaptive_engine_view.html
@@ -145,34 +145,36 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:ac83a8efe25c0e5b9bf7756ac3a500bb1" id="r_ac83a8efe25c0e5b9bf7756ac3a500bb1"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac83a8efe25c0e5b9bf7756ac3a500bb1">getNetworkSpecies</a> () const override</td></tr>
 <tr class="memdesc:ac83a8efe25c0e5b9bf7756ac3a500bb1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the list of active species in the network.  <br /></td></tr>
 <tr class="separator:ac83a8efe25c0e5b9bf7756ac3a500bb1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af703ad17ea65ffff4b75bf8ccc00e5d5" id="r_af703ad17ea65ffff4b75bf8ccc00e5d5"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af703ad17ea65ffff4b75bf8ccc00e5d5">calculateRHSAndEnergy</a> (const std::vector&lt; double &gt; &amp;Y_culled, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:af703ad17ea65ffff4b75bf8ccc00e5d5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the right-hand side (dY/dt) and energy generation for the active species.  <br /></td></tr>
-<tr class="separator:af703ad17ea65ffff4b75bf8ccc00e5d5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a03fc187d3d306b9058103b9522cbbaeb" id="r_a03fc187d3d306b9058103b9522cbbaeb"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a03fc187d3d306b9058103b9522cbbaeb">generateJacobianMatrix</a> (const std::vector&lt; double &gt; &amp;Y_dynamic, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:a03fc187d3d306b9058103b9522cbbaeb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for the active species.  <br /></td></tr>
-<tr class="separator:a03fc187d3d306b9058103b9522cbbaeb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4710d218c8a0fd161e994ecd60b48e58" id="r_a4710d218c8a0fd161e994ecd60b48e58"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4710d218c8a0fd161e994ecd60b48e58">getJacobianMatrixEntry</a> (const int i_culled, const int j_culled) const override</td></tr>
-<tr class="memdesc:a4710d218c8a0fd161e994ecd60b48e58"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the Jacobian matrix for the active species.  <br /></td></tr>
-<tr class="separator:a4710d218c8a0fd161e994ecd60b48e58"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac5545d546166de94514871d7ad7b8669" id="r_ac5545d546166de94514871d7ad7b8669"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac5545d546166de94514871d7ad7b8669">calculateRHSAndEnergy</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:ac5545d546166de94514871d7ad7b8669"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the right-hand side (dY/dt) and energy generation for the active species.  <br /></td></tr>
+<tr class="separator:ac5545d546166de94514871d7ad7b8669"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5d1b50afd2fba6af75e976a4f9c9dcbc" id="r_a5d1b50afd2fba6af75e976a4f9c9dcbc"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5d1b50afd2fba6af75e976a4f9c9dcbc">calculateEpsDerivatives</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="separator:a5d1b50afd2fba6af75e976a4f9c9dcbc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8da7664cf483cba7f979f855a74c3559" id="r_a8da7664cf483cba7f979f855a74c3559"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8da7664cf483cba7f979f855a74c3559">generateJacobianMatrix</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a8da7664cf483cba7f979f855a74c3559"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for the active species.  <br /></td></tr>
+<tr class="separator:a8da7664cf483cba7f979f855a74c3559"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adf3b8a5734983509ca02b7a1a480119f" id="r_adf3b8a5734983509ca02b7a1a480119f"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#adf3b8a5734983509ca02b7a1a480119f">getJacobianMatrixEntry</a> (const fourdst::atomic::Species &amp;rowSpecies, const fourdst::atomic::Species &amp;colSpecies) const override</td></tr>
+<tr class="memdesc:adf3b8a5734983509ca02b7a1a480119f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the Jacobian matrix for the active species.  <br /></td></tr>
+<tr class="separator:adf3b8a5734983509ca02b7a1a480119f"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a231193a61ba5a31e8eb92b0d4ce69111" id="r_a231193a61ba5a31e8eb92b0d4ce69111"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a231193a61ba5a31e8eb92b0d4ce69111">generateStoichiometryMatrix</a> () override</td></tr>
 <tr class="memdesc:a231193a61ba5a31e8eb92b0d4ce69111"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the stoichiometry matrix for the active reactions and species.  <br /></td></tr>
 <tr class="separator:a231193a61ba5a31e8eb92b0d4ce69111"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a67b4ea8cad115394bb4a42cc39d696f9" id="r_a67b4ea8cad115394bb4a42cc39d696f9"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a67b4ea8cad115394bb4a42cc39d696f9">getStoichiometryMatrixEntry</a> (const int speciesIndex_culled, const int reactionIndex_culled) const override</td></tr>
-<tr class="memdesc:a67b4ea8cad115394bb4a42cc39d696f9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the stoichiometry matrix for the active species and reactions.  <br /></td></tr>
-<tr class="separator:a67b4ea8cad115394bb4a42cc39d696f9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a048d4b1d41ecb4125a558d1b9ed7cb31" id="r_a048d4b1d41ecb4125a558d1b9ed7cb31"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a048d4b1d41ecb4125a558d1b9ed7cb31">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const std::vector&lt; double &gt; &amp;Y_culled, double T9, double rho) const override</td></tr>
-<tr class="memdesc:a048d4b1d41ecb4125a558d1b9ed7cb31"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the molar reaction flow for a given reaction in the active network.  <br /></td></tr>
-<tr class="separator:a048d4b1d41ecb4125a558d1b9ed7cb31"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a12cc2f352678fba9688363ba1876ab9c" id="r_a12cc2f352678fba9688363ba1876ab9c"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a12cc2f352678fba9688363ba1876ab9c">getNetworkReactions</a> () const override</td></tr>
-<tr class="memdesc:a12cc2f352678fba9688363ba1876ab9c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the set of active logical reactions in the network.  <br /></td></tr>
-<tr class="separator:a12cc2f352678fba9688363ba1876ab9c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7b3a6b3ab0a52f0f84d2b142e74ea672" id="r_a7b3a6b3ab0a52f0f84d2b142e74ea672"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7b3a6b3ab0a52f0f84d2b142e74ea672">setNetworkReactions</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;reactions) override</td></tr>
-<tr class="separator:a7b3a6b3ab0a52f0f84d2b142e74ea672"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4e856d6d4d2fc220952bbb7e6b2f85d9" id="r_a4e856d6d4d2fc220952bbb7e6b2f85d9"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4e856d6d4d2fc220952bbb7e6b2f85d9">getSpeciesTimescales</a> (const std::vector&lt; double &gt; &amp;Y_culled, double T9, double rho) const override</td></tr>
-<tr class="memdesc:a4e856d6d4d2fc220952bbb7e6b2f85d9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes timescales for all active species in the network.  <br /></td></tr>
-<tr class="separator:a4e856d6d4d2fc220952bbb7e6b2f85d9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a522e78bce9ff062939572248d57f8cea" id="r_a522e78bce9ff062939572248d57f8cea"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a522e78bce9ff062939572248d57f8cea">getSpeciesDestructionTimescales</a> (const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
-<tr class="separator:a522e78bce9ff062939572248d57f8cea"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abe2ca6426e10cc6a10090eecf7098dbe" id="r_abe2ca6426e10cc6a10090eecf7098dbe"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abe2ca6426e10cc6a10090eecf7098dbe">getStoichiometryMatrixEntry</a> (const fourdst::atomic::Species &amp;species, const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction) const override</td></tr>
+<tr class="memdesc:abe2ca6426e10cc6a10090eecf7098dbe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the stoichiometry matrix for the active species and reactions.  <br /></td></tr>
+<tr class="separator:abe2ca6426e10cc6a10090eecf7098dbe"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3c1e27b45051c4ba481a2b87513982ed" id="r_a3c1e27b45051c4ba481a2b87513982ed"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3c1e27b45051c4ba481a2b87513982ed">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a3c1e27b45051c4ba481a2b87513982ed"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the molar reaction flow for a given reaction in the active network.  <br /></td></tr>
+<tr class="separator:a3c1e27b45051c4ba481a2b87513982ed"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3247c1e6a76de5622223ee7b5ca3452a" id="r_a3247c1e6a76de5622223ee7b5ca3452a"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3247c1e6a76de5622223ee7b5ca3452a">getNetworkReactions</a> () const override</td></tr>
+<tr class="memdesc:a3247c1e6a76de5622223ee7b5ca3452a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the set of active logical reactions in the network.  <br /></td></tr>
+<tr class="separator:a3247c1e6a76de5622223ee7b5ca3452a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adedc8547568d643473bdfcc86040b488" id="r_adedc8547568d643473bdfcc86040b488"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#adedc8547568d643473bdfcc86040b488">setNetworkReactions</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions) override</td></tr>
+<tr class="separator:adedc8547568d643473bdfcc86040b488"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a57a218c5a145f589531777c8615b7408" id="r_a57a218c5a145f589531777c8615b7408"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a57a218c5a145f589531777c8615b7408">getSpeciesTimescales</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a57a218c5a145f589531777c8615b7408"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes timescales for all active species in the network.  <br /></td></tr>
+<tr class="separator:a57a218c5a145f589531777c8615b7408"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa861db5f6fc4e85fb51f524e4e1367c6" id="r_aa861db5f6fc4e85fb51f524e4e1367c6"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa861db5f6fc4e85fb51f524e4e1367c6">getSpeciesDestructionTimescales</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="separator:aa861db5f6fc4e85fb51f524e4e1367c6"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:aee095b30a9dce5fcb5ae2fa1d2aa192c" id="r_aee095b30a9dce5fcb5ae2fa1d2aa192c"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aee095b30a9dce5fcb5ae2fa1d2aa192c">getBaseEngine</a> () const override</td></tr>
 <tr class="memdesc:aee095b30a9dce5fcb5ae2fa1d2aa192c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the base engine.  <br /></td></tr>
 <tr class="separator:aee095b30a9dce5fcb5ae2fa1d2aa192c"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -182,9 +184,9 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:a0ab1199f900a58f309c3c36532c9164f" id="r_a0ab1199f900a58f309c3c36532c9164f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0ab1199f900a58f309c3c36532c9164f">getScreeningModel</a> () const override</td></tr>
 <tr class="memdesc:a0ab1199f900a58f309c3c36532c9164f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the screening model from the base engine.  <br /></td></tr>
 <tr class="separator:a0ab1199f900a58f309c3c36532c9164f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9055feb245524a5a9549ace935f059ff" id="r_a9055feb245524a5a9549ace935f059ff"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9055feb245524a5a9549ace935f059ff">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
-<tr class="memdesc:a9055feb245524a5a9549ace935f059ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the index of a species in the network.  <br /></td></tr>
-<tr class="separator:a9055feb245524a5a9549ace935f059ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abb811382522c31f6456787edd4f59ace" id="r_abb811382522c31f6456787edd4f59ace"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abb811382522c31f6456787edd4f59ace">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:abb811382522c31f6456787edd4f59ace"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the index of a species in the network.  <br /></td></tr>
+<tr class="separator:abb811382522c31f6456787edd4f59ace"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a7d0237956bf3ec7230bc51d88e7f8019" id="r_a7d0237956bf3ec7230bc51d88e7f8019"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7d0237956bf3ec7230bc51d88e7f8019">mapNetInToMolarAbundanceVector</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn) const override</td></tr>
 <tr class="memdesc:a7d0237956bf3ec7230bc51d88e7f8019"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map a <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> object to a vector of molar abundances.  <br /></td></tr>
 <tr class="separator:a7d0237956bf3ec7230bc51d88e7f8019"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -192,8 +194,8 @@ Public Member Functions</h2></td></tr>
 <tr class="memdesc:a70005361262bc180d4417b608661e3c3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prime the engine with initial conditions.  <br /></td></tr>
 <tr class="separator:a70005361262bc180d4417b608661e3c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="inherit_header pub_methods_classgridfire_1_1_dynamic_engine"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1_dynamic_engine')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td></tr>
-<tr class="memitem:a818d942efa843959393e4eed3263b7e7 inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a818d942efa843959393e4eed3263b7e7"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7">generateJacobianMatrix</a> (const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const <a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">SparsityPattern</a> &amp;sparsityPattern) const</td></tr>
-<tr class="separator:a818d942efa843959393e4eed3263b7e7 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a11d602a708af4629f51873b17f7b8dbd inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a11d602a708af4629f51873b17f7b8dbd"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd">generateJacobianMatrix</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho, const <a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">SparsityPattern</a> &amp;sparsityPattern) const</td></tr>
+<tr class="separator:a11d602a708af4629f51873b17f7b8dbd inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a04317b66ef14d519264bc30ee69f5bf9 inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a04317b66ef14d519264bc30ee69f5bf9"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">getDepth</a> () const</td></tr>
 <tr class="memdesc:a04317b66ef14d519264bc30ee69f5bf9 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the depth of the network.  <br /></td></tr>
 <tr class="separator:a04317b66ef14d519264bc30ee69f5bf9 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -215,8 +217,8 @@ Private Types</h2></td></tr>
 <tr class="separator:afec39b2faa34ea65c5488dd8e11ba3c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a5eaf7c3a4e28cd3a4f34979b88a80103" id="r_a5eaf7c3a4e28cd3a4f34979b88a80103"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5eaf7c3a4e28cd3a4f34979b88a80103">LogManager</a> = fourdst::logging::LogManager</td></tr>
 <tr class="separator:a5eaf7c3a4e28cd3a4f34979b88a80103"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4ff60b5214ec0bdaf683feb6615573a5" id="r_a4ff60b5214ec0bdaf683feb6615573a5"><td class="memItemLeft" align="right" valign="top">typedef std::pair&lt; std::unordered_set&lt; const <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html">reaction::LogicalReaction</a> * &gt;, std::unordered_set&lt; fourdst::atomic::Species &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4ff60b5214ec0bdaf683feb6615573a5">RescueSet</a></td></tr>
-<tr class="separator:a4ff60b5214ec0bdaf683feb6615573a5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac674338ddcbae4c33dd84b0441631806" id="r_ac674338ddcbae4c33dd84b0441631806"><td class="memItemLeft" align="right" valign="top">typedef std::pair&lt; std::unordered_set&lt; const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> * &gt;, std::unordered_set&lt; fourdst::atomic::Species &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac674338ddcbae4c33dd84b0441631806">RescueSet</a></td></tr>
+<tr class="separator:ac674338ddcbae4c33dd84b0441631806"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
 Private Member Functions</h2></td></tr>
@@ -241,20 +243,20 @@ Private Member Functions</h2></td></tr>
 <tr class="memitem:aedc0dedb51c81e03f253cc409a5d5c40" id="r_aedc0dedb51c81e03f253cc409a5d5c40"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aedc0dedb51c81e03f253cc409a5d5c40">validateState</a> () const</td></tr>
 <tr class="memdesc:aedc0dedb51c81e03f253cc409a5d5c40"><td class="mdescLeft">&#160;</td><td class="mdescRight">Validates that the <a class="el" href="classgridfire_1_1_adaptive_engine_view.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a> is not stale.  <br /></td></tr>
 <tr class="separator:aedc0dedb51c81e03f253cc409a5d5c40"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abdbaf4b87629efe43ac1255dad424c0c" id="r_abdbaf4b87629efe43ac1255dad424c0c"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html">ReactionFlow</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abdbaf4b87629efe43ac1255dad424c0c">calculateAllReactionFlows</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn, std::vector&lt; double &gt; &amp;out_Y_Full) const</td></tr>
-<tr class="memdesc:abdbaf4b87629efe43ac1255dad424c0c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the molar reaction flow rate for all reactions in the full network.  <br /></td></tr>
-<tr class="separator:abdbaf4b87629efe43ac1255dad424c0c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab5397d217039f096acededd4d2779780" id="r_ab5397d217039f096acededd4d2779780"><td class="memItemLeft" align="right" valign="top">std::pair&lt; std::vector&lt; <a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html">ReactionFlow</a> &gt;, fourdst::composition::Composition &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab5397d217039f096acededd4d2779780">calculateAllReactionFlows</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn) const</td></tr>
+<tr class="memdesc:ab5397d217039f096acededd4d2779780"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the molar reaction flow rate for all reactions in the full network.  <br /></td></tr>
+<tr class="separator:ab5397d217039f096acededd4d2779780"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a0ed21f7e7c1034fc87b40d4116c4221b" id="r_a0ed21f7e7c1034fc87b40d4116c4221b"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0ed21f7e7c1034fc87b40d4116c4221b">findReachableSpecies</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn) const</td></tr>
 <tr class="memdesc:a0ed21f7e7c1034fc87b40d4116c4221b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Finds all species that are reachable from the initial fuel through the reaction network.  <br /></td></tr>
 <tr class="separator:a0ed21f7e7c1034fc87b40d4116c4221b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a42417e96fe9fd623458af109401daf08" id="r_a42417e96fe9fd623458af109401daf08"><td class="memItemLeft" align="right" valign="top">std::vector&lt; const <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html">reaction::LogicalReaction</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a42417e96fe9fd623458af109401daf08">cullReactionsByFlow</a> (const std::vector&lt; <a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html">ReactionFlow</a> &gt; &amp;allFlows, const std::unordered_set&lt; fourdst::atomic::Species &gt; &amp;reachableSpecies, const std::vector&lt; double &gt; &amp;Y_full, double maxFlow) const</td></tr>
-<tr class="memdesc:a42417e96fe9fd623458af109401daf08"><td class="mdescLeft">&#160;</td><td class="mdescRight">Culls reactions from the network based on their flow rates.  <br /></td></tr>
-<tr class="separator:a42417e96fe9fd623458af109401daf08"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a823c665ba89452aa2b3d5422fa5d313f" id="r_a823c665ba89452aa2b3d5422fa5d313f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="#a4ff60b5214ec0bdaf683feb6615573a5">RescueSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a823c665ba89452aa2b3d5422fa5d313f">rescueEdgeSpeciesDestructionChannel</a> (const std::vector&lt; double &gt; &amp;Y_full, const double T9, const double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies, const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;activeReactions) const</td></tr>
-<tr class="separator:a823c665ba89452aa2b3d5422fa5d313f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa79fb382c98461b02a2c30668491e6c5" id="r_aa79fb382c98461b02a2c30668491e6c5"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa79fb382c98461b02a2c30668491e6c5">finalizeActiveSet</a> (const std::vector&lt; const <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html">reaction::LogicalReaction</a> * &gt; &amp;finalReactions)</td></tr>
-<tr class="memdesc:aa79fb382c98461b02a2c30668491e6c5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Finalizes the set of active species and reactions.  <br /></td></tr>
-<tr class="separator:aa79fb382c98461b02a2c30668491e6c5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a95fbfb7f2bdbf80195f1ea0aff8d62fb" id="r_a95fbfb7f2bdbf80195f1ea0aff8d62fb"><td class="memItemLeft" align="right" valign="top">std::vector&lt; const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a95fbfb7f2bdbf80195f1ea0aff8d62fb">cullReactionsByFlow</a> (const std::vector&lt; <a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html">ReactionFlow</a> &gt; &amp;allFlows, const std::unordered_set&lt; fourdst::atomic::Species &gt; &amp;reachableSpecies, const fourdst::composition::Composition &amp;comp, double maxFlow) const</td></tr>
+<tr class="memdesc:a95fbfb7f2bdbf80195f1ea0aff8d62fb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Culls reactions from the network based on their flow rates.  <br /></td></tr>
+<tr class="separator:a95fbfb7f2bdbf80195f1ea0aff8d62fb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0439f464865b4c01bad0f6be6055c3fc" id="r_a0439f464865b4c01bad0f6be6055c3fc"><td class="memItemLeft" align="right" valign="top"><a class="el" href="#ac674338ddcbae4c33dd84b0441631806">RescueSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0439f464865b4c01bad0f6be6055c3fc">rescueEdgeSpeciesDestructionChannel</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies, const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;activeReactions) const</td></tr>
+<tr class="separator:a0439f464865b4c01bad0f6be6055c3fc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7b8b3a786b973e4383e721358e61b7ed" id="r_a7b8b3a786b973e4383e721358e61b7ed"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7b8b3a786b973e4383e721358e61b7ed">finalizeActiveSet</a> (const std::vector&lt; const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> * &gt; &amp;finalReactions)</td></tr>
+<tr class="memdesc:a7b8b3a786b973e4383e721358e61b7ed"><td class="mdescLeft">&#160;</td><td class="mdescRight">Finalizes the set of active species and reactions.  <br /></td></tr>
+<tr class="separator:a7b8b3a786b973e4383e721358e61b7ed"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
 Private Attributes</h2></td></tr>
@@ -270,9 +272,9 @@ Private Attributes</h2></td></tr>
 <tr class="memitem:af4bc9fc6e4afcd6a53c49ca6e2a95940" id="r_af4bc9fc6e4afcd6a53c49ca6e2a95940"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af4bc9fc6e4afcd6a53c49ca6e2a95940">m_activeSpecies</a></td></tr>
 <tr class="memdesc:af4bc9fc6e4afcd6a53c49ca6e2a95940"><td class="mdescLeft">&#160;</td><td class="mdescRight">The set of species that are currently active in the network.  <br /></td></tr>
 <tr class="separator:af4bc9fc6e4afcd6a53c49ca6e2a95940"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a19fc7e02e216b797aa643fa35e429800" id="r_a19fc7e02e216b797aa643fa35e429800"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a19fc7e02e216b797aa643fa35e429800">m_activeReactions</a></td></tr>
-<tr class="memdesc:a19fc7e02e216b797aa643fa35e429800"><td class="mdescLeft">&#160;</td><td class="mdescRight">The set of reactions that are currently active in the network.  <br /></td></tr>
-<tr class="separator:a19fc7e02e216b797aa643fa35e429800"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab5ab06941bf6d97007d0a76658bf2aa6" id="r_ab5ab06941bf6d97007d0a76658bf2aa6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab5ab06941bf6d97007d0a76658bf2aa6">m_activeReactions</a></td></tr>
+<tr class="memdesc:ab5ab06941bf6d97007d0a76658bf2aa6"><td class="mdescLeft">&#160;</td><td class="mdescRight">The set of reactions that are currently active in the network.  <br /></td></tr>
+<tr class="separator:ab5ab06941bf6d97007d0a76658bf2aa6"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a5f66204a0ff5b27eed243afddecb0093" id="r_a5f66204a0ff5b27eed243afddecb0093"><td class="memItemLeft" align="right" valign="top">std::vector&lt; size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5f66204a0ff5b27eed243afddecb0093">m_speciesIndexMap</a></td></tr>
 <tr class="memdesc:a5f66204a0ff5b27eed243afddecb0093"><td class="mdescLeft">&#160;</td><td class="mdescRight">A map from the indices of the active species to the indices of the corresponding species in the full network.  <br /></td></tr>
 <tr class="separator:a5f66204a0ff5b27eed243afddecb0093"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -345,8 +347,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a4ff60b5214ec0bdaf683feb6615573a5" name="a4ff60b5214ec0bdaf683feb6615573a5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4ff60b5214ec0bdaf683feb6615573a5">&#9670;&#160;</a></span>RescueSet</h2>
+<a id="ac674338ddcbae4c33dd84b0441631806" name="ac674338ddcbae4c33dd84b0441631806"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac674338ddcbae4c33dd84b0441631806">&#9670;&#160;</a></span>RescueSet</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -355,7 +357,7 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">typedef std::pair&lt;std::unordered_set&lt;const <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html">reaction::LogicalReaction</a>*&gt;, std::unordered_set&lt;fourdst::atomic::Species&gt; &gt; <a class="el" href="#a4ff60b5214ec0bdaf683feb6615573a5">gridfire::AdaptiveEngineView::RescueSet</a></td>
+          <td class="memname">typedef std::pair&lt;std::unordered_set&lt;const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a>*&gt;, std::unordered_set&lt;fourdst::atomic::Species&gt; &gt; <a class="el" href="#ac674338ddcbae4c33dd84b0441631806">gridfire::AdaptiveEngineView::RescueSet</a></td>
         </tr>
       </table>
   </td>
@@ -403,8 +405,8 @@ Private Attributes</h2></td></tr>
 </div>
 </div>
 <h2 class="groupheader">Member Function Documentation</h2>
-<a id="abdbaf4b87629efe43ac1255dad424c0c" name="abdbaf4b87629efe43ac1255dad424c0c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abdbaf4b87629efe43ac1255dad424c0c">&#9670;&#160;</a></span>calculateAllReactionFlows()</h2>
+<a id="ab5397d217039f096acededd4d2779780" name="ab5397d217039f096acededd4d2779780"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab5397d217039f096acededd4d2779780">&#9670;&#160;</a></span>calculateAllReactionFlows()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -413,14 +415,10 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::vector&lt; <a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html">AdaptiveEngineView::ReactionFlow</a> &gt; gridfire::AdaptiveEngineView::calculateAllReactionFlows </td>
+          <td class="memname">std::pair&lt; std::vector&lt; <a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html">AdaptiveEngineView::ReactionFlow</a> &gt;, fourdst::composition::Composition &gt; gridfire::AdaptiveEngineView::calculateAllReactionFlows </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>netIn</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>out_Y_Full</em></span>&#160;) const</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>netIn</em></span></td><td>)</td>
+          <td> const</td>
         </tr>
       </table>
   </td>
@@ -435,13 +433,11 @@ Private Attributes</h2></td></tr>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
     <tr><td class="paramname">netIn</td><td>The current network input, containing temperature, density, and composition. </td></tr>
-    <tr><td class="paramname">out_Y_Full</td><td>A vector that will be populated with the molar abundances of all species in the full network. </td></tr>
   </table>
   </dd>
 </dl>
-<dl class="section return"><dt>Returns</dt><dd>A vector of <a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html" title="A struct to hold a reaction and its flow rate.">ReactionFlow</a> structs, each containing a pointer to a reaction and its calculated flow rate.</dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>A pair with the first element a vector of <a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html" title="A struct to hold a reaction and its flow rate.">ReactionFlow</a> structs, each containing a pointer to a reaction and its calculated flow rate and the second being a composition object where species which were not present in netIn but are present in the definition of the base engine are registered but have 0 mass fraction.</dd></dl>
 <dl class="section user"><dt>Algorithm:</dt><dd><ol type="1">
-<li>Clears and reserves space in <code>out_Y_Full</code>.</li>
 <li>Iterates through all species in the base engine's network.</li>
 <li>For each species, it retrieves the molar abundance from <code>netIn.composition</code>. If the species is not found, its abundance is set to 0.0.</li>
 <li>Converts the temperature from Kelvin to T9.</li>
@@ -453,8 +449,53 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a048d4b1d41ecb4125a558d1b9ed7cb31" name="a048d4b1d41ecb4125a558d1b9ed7cb31"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a048d4b1d41ecb4125a558d1b9ed7cb31">&#9670;&#160;</a></span>calculateMolarReactionFlow()</h2>
+<a id="a5d1b50afd2fba6af75e976a4f9c9dcbc" name="a5d1b50afd2fba6af75e976a4f9c9dcbc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5d1b50afd2fba6af75e976a4f9c9dcbc">&#9670;&#160;</a></span>calculateEpsDerivatives()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a> gridfire::AdaptiveEngineView::calculateEpsDerivatives </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The current composition of the system. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A struct containing the derivatives of the energy generation rate with respect to temperature and density. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a264bd5a8891c8c5f0dff32867effe547">gridfire::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a3c1e27b45051c4ba481a2b87513982ed" name="a3c1e27b45051c4ba481a2b87513982ed"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3c1e27b45051c4ba481a2b87513982ed">&#9670;&#160;</a></span>calculateMolarReactionFlow()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -470,7 +511,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_culled</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -494,7 +535,7 @@ Private Attributes</h2></td></tr>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
     <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the flow. </td></tr>
-    <tr><td class="paramname">Y_culled</td><td>Vector of current abundances for the active species. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -510,12 +551,12 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a39cf5b738eea0a275bf8c0eb5789fab3">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="af703ad17ea65ffff4b75bf8ccc00e5d5" name="af703ad17ea65ffff4b75bf8ccc00e5d5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af703ad17ea65ffff4b75bf8ccc00e5d5">&#9670;&#160;</a></span>calculateRHSAndEnergy()</h2>
+<a id="ac5545d546166de94514871d7ad7b8669" name="ac5545d546166de94514871d7ad7b8669"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac5545d546166de94514871d7ad7b8669">&#9670;&#160;</a></span>calculateRHSAndEnergy()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -526,17 +567,17 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt; gridfire::AdaptiveEngineView::calculateRHSAndEnergy </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_culled</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -549,7 +590,7 @@ Private Attributes</h2></td></tr>
 <p>Calculates the right-hand side (dY/dt) and energy generation for the active species. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y_culled</td><td>A vector of abundances for the active species. </td></tr>
+    <tr><td class="paramname">comp</td><td>The current composition of the system. </td></tr>
     <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
   </table>
@@ -565,7 +606,7 @@ Private Attributes</h2></td></tr>
 </dl>
 <dl class="section see"><dt>See also</dt><dd><a class="el" href="#a2a7ecf985a326b4bea43e00cf9ee43dd" title="Updates the active species and reactions based on the current conditions.">AdaptiveEngineView::update()</a> </dd></dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb">gridfire::Engine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740">gridfire::Engine</a>.</p>
 
 </div>
 </div>
@@ -629,8 +670,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a42417e96fe9fd623458af109401daf08" name="a42417e96fe9fd623458af109401daf08"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a42417e96fe9fd623458af109401daf08">&#9670;&#160;</a></span>cullReactionsByFlow()</h2>
+<a id="a95fbfb7f2bdbf80195f1ea0aff8d62fb" name="a95fbfb7f2bdbf80195f1ea0aff8d62fb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a95fbfb7f2bdbf80195f1ea0aff8d62fb">&#9670;&#160;</a></span>cullReactionsByFlow()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -639,7 +680,7 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::vector&lt; const <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html">reaction::LogicalReaction</a> * &gt; gridfire::AdaptiveEngineView::cullReactionsByFlow </td>
+          <td class="memname">std::vector&lt; const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> * &gt; gridfire::AdaptiveEngineView::cullReactionsByFlow </td>
           <td>(</td>
           <td class="paramtype">const std::vector&lt; <a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html">ReactionFlow</a> &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>allFlows</em></span>, </td>
         </tr>
@@ -651,7 +692,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_full</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -672,7 +713,7 @@ Private Attributes</h2></td></tr>
   <table class="params">
     <tr><td class="paramname">allFlows</td><td>A vector of all reactions and their flow rates. </td></tr>
     <tr><td class="paramname">reachableSpecies</td><td>A set of all species reachable from the initial fuel. </td></tr>
-    <tr><td class="paramname">Y_full</td><td>A vector of molar abundances for all species in the full network. </td></tr>
+    <tr><td class="paramname">comp</td><td>The current composition of the system. </td></tr>
     <tr><td class="paramname">maxFlow</td><td>The maximum reaction flow rate in the network. </td></tr>
   </table>
   </dd>
@@ -689,8 +730,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="aa79fb382c98461b02a2c30668491e6c5" name="aa79fb382c98461b02a2c30668491e6c5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa79fb382c98461b02a2c30668491e6c5">&#9670;&#160;</a></span>finalizeActiveSet()</h2>
+<a id="a7b8b3a786b973e4383e721358e61b7ed" name="a7b8b3a786b973e4383e721358e61b7ed"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7b8b3a786b973e4383e721358e61b7ed">&#9670;&#160;</a></span>finalizeActiveSet()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -701,7 +742,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">void gridfire::AdaptiveEngineView::finalizeActiveSet </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; const <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html">reaction::LogicalReaction</a> * &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>finalReactions</em></span></td><td>)</td>
+          <td class="paramtype">const std::vector&lt; const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> * &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>finalReactions</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -772,8 +813,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a03fc187d3d306b9058103b9522cbbaeb" name="a03fc187d3d306b9058103b9522cbbaeb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a03fc187d3d306b9058103b9522cbbaeb">&#9670;&#160;</a></span>generateJacobianMatrix()</h2>
+<a id="a8da7664cf483cba7f979f855a74c3559" name="a8da7664cf483cba7f979f855a74c3559"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8da7664cf483cba7f979f855a74c3559">&#9670;&#160;</a></span>generateJacobianMatrix()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -784,17 +825,17 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">void gridfire::AdaptiveEngineView::generateJacobianMatrix </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_dynamic</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -807,7 +848,7 @@ Private Attributes</h2></td></tr>
 <p>Generates the Jacobian matrix for the active species. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y_dynamic</td><td>A vector of abundances for the active species. </td></tr>
+    <tr><td class="paramname">comp</td><td>The current composition of the system. </td></tr>
     <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>The density in g/cm^3.</td></tr>
   </table>
@@ -822,7 +863,7 @@ Private Attributes</h2></td></tr>
 </dl>
 <dl class="section see"><dt>See also</dt><dd><a class="el" href="#a2a7ecf985a326b4bea43e00cf9ee43dd" title="Updates the active species and reactions based on the current conditions.">AdaptiveEngineView::update()</a> </dd></dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a21d15531309456ee83f7675251e7a1bf">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -893,8 +934,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a4710d218c8a0fd161e994ecd60b48e58" name="a4710d218c8a0fd161e994ecd60b48e58"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4710d218c8a0fd161e994ecd60b48e58">&#9670;&#160;</a></span>getJacobianMatrixEntry()</h2>
+<a id="adf3b8a5734983509ca02b7a1a480119f" name="adf3b8a5734983509ca02b7a1a480119f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adf3b8a5734983509ca02b7a1a480119f">&#9670;&#160;</a></span>getJacobianMatrixEntry()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -905,12 +946,12 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">double gridfire::AdaptiveEngineView::getJacobianMatrixEntry </td>
           <td>(</td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>i_culled</em></span>, </td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>rowSpecies</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>j_culled</em></span>&#160;) const</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>colSpecies</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -923,8 +964,8 @@ Private Attributes</h2></td></tr>
 <p>Gets an entry from the Jacobian matrix for the active species. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">i_culled</td><td>The row index (species index) in the culled matrix. </td></tr>
-    <tr><td class="paramname">j_culled</td><td>The column index (species index) in the culled matrix. </td></tr>
+    <tr><td class="paramname">rowSpecies</td><td>The species corresponding to the row index in the culled species list. </td></tr>
+    <tr><td class="paramname">colSpecies</td><td>The species corresponding to the column index in the culled species list </td></tr>
   </table>
   </dd>
 </dl>
@@ -939,12 +980,12 @@ Private Attributes</h2></td></tr>
 </dl>
 <dl class="section see"><dt>See also</dt><dd><a class="el" href="#a2a7ecf985a326b4bea43e00cf9ee43dd" title="Updates the active species and reactions based on the current conditions.">AdaptiveEngineView::update()</a> </dd></dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a88dbf350dc0ea3e2b64d825f489e0d60">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="a12cc2f352678fba9688363ba1876ab9c" name="a12cc2f352678fba9688363ba1876ab9c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a12cc2f352678fba9688363ba1876ab9c">&#9670;&#160;</a></span>getNetworkReactions()</h2>
+<a id="a3247c1e6a76de5622223ee7b5ca3452a" name="a3247c1e6a76de5622223ee7b5ca3452a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3247c1e6a76de5622223ee7b5ca3452a">&#9670;&#160;</a></span>getNetworkReactions()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -953,7 +994,7 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp; gridfire::AdaptiveEngineView::getNetworkReactions </td>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp; gridfire::AdaptiveEngineView::getNetworkReactions </td>
           <td>(</td>
           <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
           <td> const</td>
@@ -967,9 +1008,9 @@ Private Attributes</h2></td></tr>
 </div><div class="memdoc">
 
 <p>Gets the set of active logical reactions in the network. </p>
-<dl class="section return"><dt>Returns</dt><dd>Reference to the <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31" title="A set of logical reactions.">LogicalReactionSet</a> containing all active reactions. </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>Reference to the LogicalReactionSet containing all active reactions. </dd></dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#af496e04f7be9a0a51ac65dc95f901ffe">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -1039,8 +1080,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a522e78bce9ff062939572248d57f8cea" name="a522e78bce9ff062939572248d57f8cea"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a522e78bce9ff062939572248d57f8cea">&#9670;&#160;</a></span>getSpeciesDestructionTimescales()</h2>
+<a id="aa861db5f6fc4e85fb51f524e4e1367c6" name="aa861db5f6fc4e85fb51f524e4e1367c6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa861db5f6fc4e85fb51f524e4e1367c6">&#9670;&#160;</a></span>getSpeciesDestructionTimescales()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1049,9 +1090,9 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt; gridfire::AdaptiveEngineView::getSpeciesDestructionTimescales </td>
+          <td class="memname">std::expected&lt; std::unordered_map&lt; Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt; gridfire::AdaptiveEngineView::getSpeciesDestructionTimescales </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -1071,12 +1112,12 @@ Private Attributes</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a25c040d3078f6ff2ef38f733eb68f1fa">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="a9055feb245524a5a9549ace935f059ff" name="a9055feb245524a5a9549ace935f059ff"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9055feb245524a5a9549ace935f059ff">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
+<a id="abb811382522c31f6456787edd4f59ace" name="abb811382522c31f6456787edd4f59ace"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abb811382522c31f6456787edd4f59ace">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1085,7 +1126,7 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">int gridfire::AdaptiveEngineView::getSpeciesIndex </td>
+          <td class="memname">size_t gridfire::AdaptiveEngineView::getSpeciesIndex </td>
           <td>(</td>
           <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
           <td> const</td>
@@ -1107,12 +1148,12 @@ Private Attributes</h2></td></tr>
 </dl>
 <p>This method allows querying the index of a specific species in the engine's internal representation. It is useful for accessing species data efficiently. </p>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a8f66fb76c9f983ee93bf8b95cdc85596">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="a4e856d6d4d2fc220952bbb7e6b2f85d9" name="a4e856d6d4d2fc220952bbb7e6b2f85d9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4e856d6d4d2fc220952bbb7e6b2f85d9">&#9670;&#160;</a></span>getSpeciesTimescales()</h2>
+<a id="a57a218c5a145f589531777c8615b7408" name="a57a218c5a145f589531777c8615b7408"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a57a218c5a145f589531777c8615b7408">&#9670;&#160;</a></span>getSpeciesTimescales()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1123,7 +1164,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">std::expected&lt; std::unordered_map&lt; Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt; gridfire::AdaptiveEngineView::getSpeciesTimescales </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_culled</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -1146,7 +1187,7 @@ Private Attributes</h2></td></tr>
 <p>Computes timescales for all active species in the network. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y_culled</td><td>Vector of current abundances for the active species. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -1161,12 +1202,12 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ae7114f5ebc6667b5e5971c0450ed03d9">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="a67b4ea8cad115394bb4a42cc39d696f9" name="a67b4ea8cad115394bb4a42cc39d696f9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a67b4ea8cad115394bb4a42cc39d696f9">&#9670;&#160;</a></span>getStoichiometryMatrixEntry()</h2>
+<a id="abe2ca6426e10cc6a10090eecf7098dbe" name="abe2ca6426e10cc6a10090eecf7098dbe"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abe2ca6426e10cc6a10090eecf7098dbe">&#9670;&#160;</a></span>getStoichiometryMatrixEntry()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1177,12 +1218,12 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">int gridfire::AdaptiveEngineView::getStoichiometryMatrixEntry </td>
           <td>(</td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>speciesIndex_culled</em></span>, </td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>reactionIndex_culled</em></span>&#160;) const</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reaction</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -1195,8 +1236,8 @@ Private Attributes</h2></td></tr>
 <p>Gets an entry from the stoichiometry matrix for the active species and reactions. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">speciesIndex_culled</td><td>The index of the species in the culled species list. </td></tr>
-    <tr><td class="paramname">reactionIndex_culled</td><td>The index of the reaction in the culled reaction list. </td></tr>
+    <tr><td class="paramname">species</td><td>The species for which to get the stoichiometric coefficient. </td></tr>
+    <tr><td class="paramname">reaction</td><td>The reaction for which to get the stoichiometric coefficient. </td></tr>
   </table>
   </dd>
 </dl>
@@ -1211,7 +1252,7 @@ Private Attributes</h2></td></tr>
 </dl>
 <dl class="section see"><dt>See also</dt><dd><a class="el" href="#a2a7ecf985a326b4bea43e00cf9ee43dd" title="Updates the active species and reactions based on the current conditions.">AdaptiveEngineView::update()</a> </dd></dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad19c8451b6f624e2938f771cc067d5c1">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -1464,8 +1505,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a823c665ba89452aa2b3d5422fa5d313f" name="a823c665ba89452aa2b3d5422fa5d313f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a823c665ba89452aa2b3d5422fa5d313f">&#9670;&#160;</a></span>rescueEdgeSpeciesDestructionChannel()</h2>
+<a id="a0439f464865b4c01bad0f6be6055c3fc" name="a0439f464865b4c01bad0f6be6055c3fc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0439f464865b4c01bad0f6be6055c3fc">&#9670;&#160;</a></span>rescueEdgeSpeciesDestructionChannel()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1474,19 +1515,19 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname"><a class="el" href="#a4ff60b5214ec0bdaf683feb6615573a5">AdaptiveEngineView::RescueSet</a> gridfire::AdaptiveEngineView::rescueEdgeSpeciesDestructionChannel </td>
+          <td class="memname"><a class="el" href="#ac674338ddcbae4c33dd84b0441631806">AdaptiveEngineView::RescueSet</a> gridfire::AdaptiveEngineView::rescueEdgeSpeciesDestructionChannel </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_full</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -1496,7 +1537,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>activeReactions</em></span>&#160;) const</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>activeReactions</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -1508,8 +1549,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a7b3a6b3ab0a52f0f84d2b142e74ea672" name="a7b3a6b3ab0a52f0f84d2b142e74ea672"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7b3a6b3ab0a52f0f84d2b142e74ea672">&#9670;&#160;</a></span>setNetworkReactions()</h2>
+<a id="adedc8547568d643473bdfcc86040b488" name="adedc8547568d643473bdfcc86040b488"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adedc8547568d643473bdfcc86040b488">&#9670;&#160;</a></span>setNetworkReactions()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1520,7 +1561,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">void gridfire::AdaptiveEngineView::setNetworkReactions </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -1531,7 +1572,7 @@ Private Attributes</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a49025489901e22a20cdf99b455ff2ff0">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -1661,8 +1702,8 @@ Private Attributes</h2></td></tr>
 </div>
 </div>
 <h2 class="groupheader">Member Data Documentation</h2>
-<a id="a19fc7e02e216b797aa643fa35e429800" name="a19fc7e02e216b797aa643fa35e429800"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a19fc7e02e216b797aa643fa35e429800">&#9670;&#160;</a></span>m_activeReactions</h2>
+<a id="ab5ab06941bf6d97007d0a76658bf2aa6" name="ab5ab06941bf6d97007d0a76658bf2aa6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab5ab06941bf6d97007d0a76658bf2aa6">&#9670;&#160;</a></span>m_activeReactions</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1671,7 +1712,7 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> gridfire::AdaptiveEngineView::m_activeReactions</td>
+          <td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> gridfire::AdaptiveEngineView::m_activeReactions</td>
         </tr>
       </table>
   </td>
diff --git a/docs/html/classgridfire_1_1_adaptive_engine_view.js b/docs/html/classgridfire_1_1_adaptive_engine_view.js
index 4f5fc15c..9c4cf107 100644
--- a/docs/html/classgridfire_1_1_adaptive_engine_view.js
+++ b/docs/html/classgridfire_1_1_adaptive_engine_view.js
@@ -3,27 +3,28 @@ var classgridfire_1_1_adaptive_engine_view =
     [ "ReactionFlow", "structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html", "structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow" ],
     [ "Config", "classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3", null ],
     [ "LogManager", "classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103", null ],
-    [ "RescueSet", "classgridfire_1_1_adaptive_engine_view.html#a4ff60b5214ec0bdaf683feb6615573a5", null ],
+    [ "RescueSet", "classgridfire_1_1_adaptive_engine_view.html#ac674338ddcbae4c33dd84b0441631806", null ],
     [ "AdaptiveEngineView", "classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455", null ],
-    [ "calculateAllReactionFlows", "classgridfire_1_1_adaptive_engine_view.html#abdbaf4b87629efe43ac1255dad424c0c", null ],
-    [ "calculateMolarReactionFlow", "classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31", null ],
-    [ "calculateRHSAndEnergy", "classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5", null ],
+    [ "calculateAllReactionFlows", "classgridfire_1_1_adaptive_engine_view.html#ab5397d217039f096acededd4d2779780", null ],
+    [ "calculateEpsDerivatives", "classgridfire_1_1_adaptive_engine_view.html#a5d1b50afd2fba6af75e976a4f9c9dcbc", null ],
+    [ "calculateMolarReactionFlow", "classgridfire_1_1_adaptive_engine_view.html#a3c1e27b45051c4ba481a2b87513982ed", null ],
+    [ "calculateRHSAndEnergy", "classgridfire_1_1_adaptive_engine_view.html#ac5545d546166de94514871d7ad7b8669", null ],
     [ "constructReactionIndexMap", "classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c", null ],
     [ "constructSpeciesIndexMap", "classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d", null ],
-    [ "cullReactionsByFlow", "classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08", null ],
-    [ "finalizeActiveSet", "classgridfire_1_1_adaptive_engine_view.html#aa79fb382c98461b02a2c30668491e6c5", null ],
+    [ "cullReactionsByFlow", "classgridfire_1_1_adaptive_engine_view.html#a95fbfb7f2bdbf80195f1ea0aff8d62fb", null ],
+    [ "finalizeActiveSet", "classgridfire_1_1_adaptive_engine_view.html#a7b8b3a786b973e4383e721358e61b7ed", null ],
     [ "findReachableSpecies", "classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b", null ],
-    [ "generateJacobianMatrix", "classgridfire_1_1_adaptive_engine_view.html#a03fc187d3d306b9058103b9522cbbaeb", null ],
+    [ "generateJacobianMatrix", "classgridfire_1_1_adaptive_engine_view.html#a8da7664cf483cba7f979f855a74c3559", null ],
     [ "generateStoichiometryMatrix", "classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111", null ],
     [ "getBaseEngine", "classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c", null ],
-    [ "getJacobianMatrixEntry", "classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58", null ],
-    [ "getNetworkReactions", "classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c", null ],
+    [ "getJacobianMatrixEntry", "classgridfire_1_1_adaptive_engine_view.html#adf3b8a5734983509ca02b7a1a480119f", null ],
+    [ "getNetworkReactions", "classgridfire_1_1_adaptive_engine_view.html#a3247c1e6a76de5622223ee7b5ca3452a", null ],
     [ "getNetworkSpecies", "classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1", null ],
     [ "getScreeningModel", "classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f", null ],
-    [ "getSpeciesDestructionTimescales", "classgridfire_1_1_adaptive_engine_view.html#a522e78bce9ff062939572248d57f8cea", null ],
-    [ "getSpeciesIndex", "classgridfire_1_1_adaptive_engine_view.html#a9055feb245524a5a9549ace935f059ff", null ],
-    [ "getSpeciesTimescales", "classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9", null ],
-    [ "getStoichiometryMatrixEntry", "classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9", null ],
+    [ "getSpeciesDestructionTimescales", "classgridfire_1_1_adaptive_engine_view.html#aa861db5f6fc4e85fb51f524e4e1367c6", null ],
+    [ "getSpeciesIndex", "classgridfire_1_1_adaptive_engine_view.html#abb811382522c31f6456787edd4f59ace", null ],
+    [ "getSpeciesTimescales", "classgridfire_1_1_adaptive_engine_view.html#a57a218c5a145f589531777c8615b7408", null ],
+    [ "getStoichiometryMatrixEntry", "classgridfire_1_1_adaptive_engine_view.html#abe2ca6426e10cc6a10090eecf7098dbe", null ],
     [ "isStale", "classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88", null ],
     [ "mapCulledToFull", "classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1", null ],
     [ "mapCulledToFullReactionIndex", "classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101", null ],
@@ -31,12 +32,12 @@ var classgridfire_1_1_adaptive_engine_view =
     [ "mapFullToCulled", "classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44", null ],
     [ "mapNetInToMolarAbundanceVector", "classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019", null ],
     [ "primeEngine", "classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3", null ],
-    [ "rescueEdgeSpeciesDestructionChannel", "classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f", null ],
-    [ "setNetworkReactions", "classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672", null ],
+    [ "rescueEdgeSpeciesDestructionChannel", "classgridfire_1_1_adaptive_engine_view.html#a0439f464865b4c01bad0f6be6055c3fc", null ],
+    [ "setNetworkReactions", "classgridfire_1_1_adaptive_engine_view.html#adedc8547568d643473bdfcc86040b488", null ],
     [ "setScreeningModel", "classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b", null ],
     [ "update", "classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd", null ],
     [ "validateState", "classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40", null ],
-    [ "m_activeReactions", "classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800", null ],
+    [ "m_activeReactions", "classgridfire_1_1_adaptive_engine_view.html#ab5ab06941bf6d97007d0a76658bf2aa6", null ],
     [ "m_activeSpecies", "classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940", null ],
     [ "m_baseEngine", "classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8", null ],
     [ "m_config", "classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30", null ],
diff --git a/docs/html/classgridfire_1_1_defined_engine_view-members.html b/docs/html/classgridfire_1_1_defined_engine_view-members.html
index 28903776..5c056970 100644
--- a/docs/html/classgridfire_1_1_defined_engine_view-members.html
+++ b/docs/html/classgridfire_1_1_defined_engine_view-members.html
@@ -105,46 +105,47 @@ $(function(){initNavTree('classgridfire_1_1_defined_engine_view.html',''); initR
 
 <p>This is the complete list of members for <a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a>, including all inherited members.</p>
 <table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d">calculateRHSAndEnergy</a>(const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e">collect</a>(const std::vector&lt; std::string &gt; &amp;peNames)</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68">constructReactionIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985">constructSpeciesIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92">DefinedEngineView</a>(const std::vector&lt; std::string &gt; &amp;peNames, DynamicEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae">generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_dynamic, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7">gridfire::DynamicEngine::generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484">getBaseEngine</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b">getJacobianMatrixEntry</a>(const int i_defined, const int j_defined) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491">getSpeciesDestructionTimescales</a>(const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72">getSpeciesTimescales</a>(const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2">getStoichiometryMatrixEntry</a>(const int speciesIndex_defined, const int reactionIndex_defined) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87">isStale</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965">m_activeReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae">m_activeSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195">m_baseEngine</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382">m_isStale</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd">m_reactionIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e">m_speciesIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873">mapFullToView</a>(const std::vector&lt; double &gt; &amp;full) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843">mapViewToFull</a>(const std::vector&lt; double &gt; &amp;defined) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1">mapViewToFullReactionIndex</a>(size_t definedReactionIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a">mapViewToFullSpeciesIndex</a>(size_t definedSpeciesIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460">primeEngine</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf">rebuild</a>(const fourdst::composition::Composition &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d">setNetworkReactions</a>(const reaction::LogicalReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0">validateNetworkState</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html">gridfire::EngineView&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a06aca977aafb4784fd167acb8c02dda2">calculateEpsDerivatives</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a74298377d0432ae3d577be0e9e6052b3">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af273b29d7700cdc34da6e2712fffc5c2">calculateRHSAndEnergy</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e">collect</a>(const std::vector&lt; std::string &gt; &amp;peNames)</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68">constructReactionIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985">constructSpeciesIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92">DefinedEngineView</a>(const std::vector&lt; std::string &gt; &amp;peNames, DynamicEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ab80eadd713a40e9263e5231737e956d0">generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd">gridfire::DynamicEngine::generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484">getBaseEngine</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#aa49532266ff959ac66f501336f102ce8">getJacobianMatrixEntry</a>(const fourdst::atomic::Species &amp;rowSpecies, const fourdst::atomic::Species &amp;colSpecies) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a5f9db5a9287aa03b2fa4d516e9a576b6">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a7bcf169ba1e12e3356d4bcc27c3fc554">getSpeciesDestructionTimescales</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af3b355ffcda6a8f2841184cc56e3761a">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a18f46d92ea7e04068ad9e7af4ed605a8">getSpeciesTimescales</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af1843cfd2a95bfa46ab40d4c4de11ef9">getStoichiometryMatrixEntry</a>(const fourdst::atomic::Species &amp;species, const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87">isStale</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a824fe65ae22fa856051f2652764a0bb6">m_activeReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae">m_activeSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195">m_baseEngine</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382">m_isStale</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd">m_reactionIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e">m_speciesIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873">mapFullToView</a>(const std::vector&lt; double &gt; &amp;full) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843">mapViewToFull</a>(const std::vector&lt; double &gt; &amp;defined) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1">mapViewToFullReactionIndex</a>(size_t definedReactionIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a">mapViewToFullSpeciesIndex</a>(size_t definedSpeciesIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460">primeEngine</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf">rebuild</a>(const fourdst::composition::Composition &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9">setNetworkReactions</a>(const reaction::ReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0">validateNetworkState</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html">gridfire::EngineView&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/classgridfire_1_1_defined_engine_view.html b/docs/html/classgridfire_1_1_defined_engine_view.html
index 6b99ad65..c5a0eac7 100644
--- a/docs/html/classgridfire_1_1_defined_engine_view.html
+++ b/docs/html/classgridfire_1_1_defined_engine_view.html
@@ -134,34 +134,37 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:a1a55f9748c45af6f13e16a6b6ceaa211" id="r_a1a55f9748c45af6f13e16a6b6ceaa211"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1a55f9748c45af6f13e16a6b6ceaa211">getNetworkSpecies</a> () const override</td></tr>
 <tr class="memdesc:a1a55f9748c45af6f13e16a6b6ceaa211"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the list of active species in the network defined by the file.  <br /></td></tr>
 <tr class="separator:a1a55f9748c45af6f13e16a6b6ceaa211"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4b0d71367cb1d4c06bcd01251bbeb60d" id="r_a4b0d71367cb1d4c06bcd01251bbeb60d"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4b0d71367cb1d4c06bcd01251bbeb60d">calculateRHSAndEnergy</a> (const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:a4b0d71367cb1d4c06bcd01251bbeb60d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the right-hand side (dY/dt) and energy generation for the active species.  <br /></td></tr>
-<tr class="separator:a4b0d71367cb1d4c06bcd01251bbeb60d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad25c722eaee1f28f8ed7b4d33a1f69ae" id="r_ad25c722eaee1f28f8ed7b4d33a1f69ae"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad25c722eaee1f28f8ed7b4d33a1f69ae">generateJacobianMatrix</a> (const std::vector&lt; double &gt; &amp;Y_dynamic, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:ad25c722eaee1f28f8ed7b4d33a1f69ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for the active species.  <br /></td></tr>
-<tr class="separator:ad25c722eaee1f28f8ed7b4d33a1f69ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a273b175049f5ce7b9208e931ad139e1b" id="r_a273b175049f5ce7b9208e931ad139e1b"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a273b175049f5ce7b9208e931ad139e1b">getJacobianMatrixEntry</a> (const int i_defined, const int j_defined) const override</td></tr>
-<tr class="memdesc:a273b175049f5ce7b9208e931ad139e1b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the Jacobian matrix for the active species.  <br /></td></tr>
-<tr class="separator:a273b175049f5ce7b9208e931ad139e1b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af273b29d7700cdc34da6e2712fffc5c2" id="r_af273b29d7700cdc34da6e2712fffc5c2"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af273b29d7700cdc34da6e2712fffc5c2">calculateRHSAndEnergy</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:af273b29d7700cdc34da6e2712fffc5c2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the right-hand side (dY/dt) and energy generation for the active species.  <br /></td></tr>
+<tr class="separator:af273b29d7700cdc34da6e2712fffc5c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a06aca977aafb4784fd167acb8c02dda2" id="r_a06aca977aafb4784fd167acb8c02dda2"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a06aca977aafb4784fd167acb8c02dda2">calculateEpsDerivatives</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a06aca977aafb4784fd167acb8c02dda2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the derivatives of the energy generation rate with respect to T and rho.  <br /></td></tr>
+<tr class="separator:a06aca977aafb4784fd167acb8c02dda2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab80eadd713a40e9263e5231737e956d0" id="r_ab80eadd713a40e9263e5231737e956d0"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab80eadd713a40e9263e5231737e956d0">generateJacobianMatrix</a> (const fourdst::composition::Composition &amp;comp, const double T9, const double rho) const override</td></tr>
+<tr class="memdesc:ab80eadd713a40e9263e5231737e956d0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for the active species.  <br /></td></tr>
+<tr class="separator:ab80eadd713a40e9263e5231737e956d0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa49532266ff959ac66f501336f102ce8" id="r_aa49532266ff959ac66f501336f102ce8"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa49532266ff959ac66f501336f102ce8">getJacobianMatrixEntry</a> (const fourdst::atomic::Species &amp;rowSpecies, const fourdst::atomic::Species &amp;colSpecies) const override</td></tr>
+<tr class="memdesc:aa49532266ff959ac66f501336f102ce8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the Jacobian matrix for the active species.  <br /></td></tr>
+<tr class="separator:aa49532266ff959ac66f501336f102ce8"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:ad07221be49ae1b5133c5b987dafac3b6" id="r_ad07221be49ae1b5133c5b987dafac3b6"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad07221be49ae1b5133c5b987dafac3b6">generateStoichiometryMatrix</a> () override</td></tr>
 <tr class="memdesc:ad07221be49ae1b5133c5b987dafac3b6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the stoichiometry matrix for the active reactions and species.  <br /></td></tr>
 <tr class="separator:ad07221be49ae1b5133c5b987dafac3b6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afa2820971397114d788730cc33feefe2" id="r_afa2820971397114d788730cc33feefe2"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afa2820971397114d788730cc33feefe2">getStoichiometryMatrixEntry</a> (const int speciesIndex_defined, const int reactionIndex_defined) const override</td></tr>
-<tr class="memdesc:afa2820971397114d788730cc33feefe2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the stoichiometry matrix for the active species and reactions.  <br /></td></tr>
-<tr class="separator:afa2820971397114d788730cc33feefe2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a142725470f96cba3edb48a29f1264032" id="r_a142725470f96cba3edb48a29f1264032"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a142725470f96cba3edb48a29f1264032">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:a142725470f96cba3edb48a29f1264032"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the molar reaction flow for a given reaction in the active network.  <br /></td></tr>
-<tr class="separator:a142725470f96cba3edb48a29f1264032"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae03b4f9afac03d4011a4d7cf0423535d" id="r_ae03b4f9afac03d4011a4d7cf0423535d"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae03b4f9afac03d4011a4d7cf0423535d">getNetworkReactions</a> () const override</td></tr>
-<tr class="memdesc:ae03b4f9afac03d4011a4d7cf0423535d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the set of active logical reactions in the network.  <br /></td></tr>
-<tr class="separator:ae03b4f9afac03d4011a4d7cf0423535d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9736edfb7c9148b60de30d50c0d3530d" id="r_a9736edfb7c9148b60de30d50c0d3530d"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9736edfb7c9148b60de30d50c0d3530d">setNetworkReactions</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;reactions) override</td></tr>
-<tr class="separator:a9736edfb7c9148b60de30d50c0d3530d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac8daafabbc76f4b6811bede241a03d72" id="r_ac8daafabbc76f4b6811bede241a03d72"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac8daafabbc76f4b6811bede241a03d72">getSpeciesTimescales</a> (const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:ac8daafabbc76f4b6811bede241a03d72"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes timescales for all active species in the network.  <br /></td></tr>
-<tr class="separator:ac8daafabbc76f4b6811bede241a03d72"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3d58e36ed8a6a0d82bb65e91090f7491" id="r_a3d58e36ed8a6a0d82bb65e91090f7491"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3d58e36ed8a6a0d82bb65e91090f7491">getSpeciesDestructionTimescales</a> (const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td></tr>
-<tr class="separator:a3d58e36ed8a6a0d82bb65e91090f7491"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af1843cfd2a95bfa46ab40d4c4de11ef9" id="r_af1843cfd2a95bfa46ab40d4c4de11ef9"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af1843cfd2a95bfa46ab40d4c4de11ef9">getStoichiometryMatrixEntry</a> (const fourdst::atomic::Species &amp;species, const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction) const override</td></tr>
+<tr class="memdesc:af1843cfd2a95bfa46ab40d4c4de11ef9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the stoichiometry matrix for the active species and reactions.  <br /></td></tr>
+<tr class="separator:af1843cfd2a95bfa46ab40d4c4de11ef9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a74298377d0432ae3d577be0e9e6052b3" id="r_a74298377d0432ae3d577be0e9e6052b3"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a74298377d0432ae3d577be0e9e6052b3">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a74298377d0432ae3d577be0e9e6052b3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the molar reaction flow for a given reaction in the active network.  <br /></td></tr>
+<tr class="separator:a74298377d0432ae3d577be0e9e6052b3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5f9db5a9287aa03b2fa4d516e9a576b6" id="r_a5f9db5a9287aa03b2fa4d516e9a576b6"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5f9db5a9287aa03b2fa4d516e9a576b6">getNetworkReactions</a> () const override</td></tr>
+<tr class="memdesc:a5f9db5a9287aa03b2fa4d516e9a576b6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the set of active logical reactions in the network.  <br /></td></tr>
+<tr class="separator:a5f9db5a9287aa03b2fa4d516e9a576b6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a655e74357cce822c4508069a3bcac2c9" id="r_a655e74357cce822c4508069a3bcac2c9"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a655e74357cce822c4508069a3bcac2c9">setNetworkReactions</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions) override</td></tr>
+<tr class="separator:a655e74357cce822c4508069a3bcac2c9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a18f46d92ea7e04068ad9e7af4ed605a8" id="r_a18f46d92ea7e04068ad9e7af4ed605a8"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a18f46d92ea7e04068ad9e7af4ed605a8">getSpeciesTimescales</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a18f46d92ea7e04068ad9e7af4ed605a8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes timescales for all active species in the network.  <br /></td></tr>
+<tr class="separator:a18f46d92ea7e04068ad9e7af4ed605a8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7bcf169ba1e12e3356d4bcc27c3fc554" id="r_a7bcf169ba1e12e3356d4bcc27c3fc554"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7bcf169ba1e12e3356d4bcc27c3fc554">getSpeciesDestructionTimescales</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="separator:a7bcf169ba1e12e3356d4bcc27c3fc554"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:ae5762f395caea5381ec177507816b5ae" id="r_ae5762f395caea5381ec177507816b5ae"><td class="memItemLeft" align="right" valign="top">fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae5762f395caea5381ec177507816b5ae">update</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn) override</td></tr>
 <tr class="memdesc:ae5762f395caea5381ec177507816b5ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Updates the engine view if it is marked as stale.  <br /></td></tr>
 <tr class="separator:ae5762f395caea5381ec177507816b5ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -173,9 +176,9 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:a3c657b82a0117118a4bb0ce7f624ae0c" id="r_a3c657b82a0117118a4bb0ce7f624ae0c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3c657b82a0117118a4bb0ce7f624ae0c">getScreeningModel</a> () const override</td></tr>
 <tr class="memdesc:a3c657b82a0117118a4bb0ce7f624ae0c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the screening model from the base engine.  <br /></td></tr>
 <tr class="separator:a3c657b82a0117118a4bb0ce7f624ae0c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abfee22688617ffe91c69be93049c89b3" id="r_abfee22688617ffe91c69be93049c89b3"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abfee22688617ffe91c69be93049c89b3">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
-<tr class="memdesc:abfee22688617ffe91c69be93049c89b3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the index of a species in the network.  <br /></td></tr>
-<tr class="separator:abfee22688617ffe91c69be93049c89b3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af3b355ffcda6a8f2841184cc56e3761a" id="r_af3b355ffcda6a8f2841184cc56e3761a"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af3b355ffcda6a8f2841184cc56e3761a">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:af3b355ffcda6a8f2841184cc56e3761a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the index of a species in the network.  <br /></td></tr>
+<tr class="separator:af3b355ffcda6a8f2841184cc56e3761a"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a72789c1c3379594b65b560da50192de2" id="r_a72789c1c3379594b65b560da50192de2"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a72789c1c3379594b65b560da50192de2">mapNetInToMolarAbundanceVector</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn) const override</td></tr>
 <tr class="memdesc:a72789c1c3379594b65b560da50192de2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map a <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> object to a vector of molar abundances.  <br /></td></tr>
 <tr class="separator:a72789c1c3379594b65b560da50192de2"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -183,8 +186,8 @@ Public Member Functions</h2></td></tr>
 <tr class="memdesc:a13033abd3b44904f98b58c93e22da460"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prime the engine with initial conditions.  <br /></td></tr>
 <tr class="separator:a13033abd3b44904f98b58c93e22da460"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="inherit_header pub_methods_classgridfire_1_1_dynamic_engine"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1_dynamic_engine')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td></tr>
-<tr class="memitem:a818d942efa843959393e4eed3263b7e7 inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a818d942efa843959393e4eed3263b7e7"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7">generateJacobianMatrix</a> (const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const <a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">SparsityPattern</a> &amp;sparsityPattern) const</td></tr>
-<tr class="separator:a818d942efa843959393e4eed3263b7e7 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a11d602a708af4629f51873b17f7b8dbd inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a11d602a708af4629f51873b17f7b8dbd"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd">generateJacobianMatrix</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho, const <a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">SparsityPattern</a> &amp;sparsityPattern) const</td></tr>
+<tr class="separator:a11d602a708af4629f51873b17f7b8dbd inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a04317b66ef14d519264bc30ee69f5bf9 inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a04317b66ef14d519264bc30ee69f5bf9"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">getDepth</a> () const</td></tr>
 <tr class="memdesc:a04317b66ef14d519264bc30ee69f5bf9 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the depth of the network.  <br /></td></tr>
 <tr class="separator:a04317b66ef14d519264bc30ee69f5bf9 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -240,9 +243,9 @@ Private Attributes</h2></td></tr>
 <tr class="memitem:a64e9c79a36d529e1b296fe5786e57aae" id="r_a64e9c79a36d529e1b296fe5786e57aae"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a64e9c79a36d529e1b296fe5786e57aae">m_activeSpecies</a></td></tr>
 <tr class="memdesc:a64e9c79a36d529e1b296fe5786e57aae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Active reactions in the defined engine.  <br /></td></tr>
 <tr class="separator:a64e9c79a36d529e1b296fe5786e57aae"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a373d4a83f30527a1bfaf1d74ad14c965" id="r_a373d4a83f30527a1bfaf1d74ad14c965"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a373d4a83f30527a1bfaf1d74ad14c965">m_activeReactions</a></td></tr>
-<tr class="memdesc:a373d4a83f30527a1bfaf1d74ad14c965"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps indices of active species to indices in the full network.  <br /></td></tr>
-<tr class="separator:a373d4a83f30527a1bfaf1d74ad14c965"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a824fe65ae22fa856051f2652764a0bb6" id="r_a824fe65ae22fa856051f2652764a0bb6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a824fe65ae22fa856051f2652764a0bb6">m_activeReactions</a></td></tr>
+<tr class="memdesc:a824fe65ae22fa856051f2652764a0bb6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps indices of active species to indices in the full network.  <br /></td></tr>
+<tr class="separator:a824fe65ae22fa856051f2652764a0bb6"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:acc4976262e208d1dd2185ebccbdd275e" id="r_acc4976262e208d1dd2185ebccbdd275e"><td class="memItemLeft" align="right" valign="top">std::vector&lt; size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#acc4976262e208d1dd2185ebccbdd275e">m_speciesIndexMap</a></td></tr>
 <tr class="memdesc:acc4976262e208d1dd2185ebccbdd275e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps indices of active reactions to indices in the full network.  <br /></td></tr>
 <tr class="separator:acc4976262e208d1dd2185ebccbdd275e"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -272,8 +275,56 @@ Private Attributes</h2></td></tr>
 </div>
 </div>
 <h2 class="groupheader">Member Function Documentation</h2>
-<a id="a142725470f96cba3edb48a29f1264032" name="a142725470f96cba3edb48a29f1264032"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a142725470f96cba3edb48a29f1264032">&#9670;&#160;</a></span>calculateMolarReactionFlow()</h2>
+<a id="a06aca977aafb4784fd167acb8c02dda2" name="a06aca977aafb4784fd167acb8c02dda2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a06aca977aafb4784fd167acb8c02dda2">&#9670;&#160;</a></span>calculateEpsDerivatives()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a> gridfire::DefinedEngineView::calculateEpsDerivatives </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculate the derivatives of the energy generation rate with respect to T and rho. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a> containing dEps/dT and dEps/dRho.</dd></dl>
+<p>This method computes the partial derivatives of the specific nuclear energy generation rate with respect to temperature and density for the current state. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a264bd5a8891c8c5f0dff32867effe547">gridfire::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a74298377d0432ae3d577be0e9e6052b3" name="a74298377d0432ae3d577be0e9e6052b3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a74298377d0432ae3d577be0e9e6052b3">&#9670;&#160;</a></span>calculateMolarReactionFlow()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -289,22 +340,22 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_defined</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -313,7 +364,7 @@ Private Attributes</h2></td></tr>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
     <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the flow. </td></tr>
-    <tr><td class="paramname">Y_defined</td><td>Vector of current abundances for the active species. </td></tr>
+    <tr><td class="paramname">comp</td><td>A Composition object containing the current composition of the system </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -327,12 +378,12 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a39cf5b738eea0a275bf8c0eb5789fab3">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="a4b0d71367cb1d4c06bcd01251bbeb60d" name="a4b0d71367cb1d4c06bcd01251bbeb60d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4b0d71367cb1d4c06bcd01251bbeb60d">&#9670;&#160;</a></span>calculateRHSAndEnergy()</h2>
+<a id="af273b29d7700cdc34da6e2712fffc5c2" name="af273b29d7700cdc34da6e2712fffc5c2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af273b29d7700cdc34da6e2712fffc5c2">&#9670;&#160;</a></span>calculateRHSAndEnergy()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -343,22 +394,22 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt; gridfire::DefinedEngineView::calculateRHSAndEnergy </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_defined</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -366,7 +417,7 @@ Private Attributes</h2></td></tr>
 <p>Calculates the right-hand side (dY/dt) and energy generation for the active species. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y_defined</td><td>A vector of abundances for the active species. </td></tr>
+    <tr><td class="paramname">comp</td><td>A Composition object containing the current composition of the system </td></tr>
     <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
   </table>
@@ -380,7 +431,7 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb">gridfire::Engine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740">gridfire::Engine</a>.</p>
 
 </div>
 </div>
@@ -427,7 +478,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel private">private</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -462,7 +513,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel private">private</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -479,8 +530,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="ad25c722eaee1f28f8ed7b4d33a1f69ae" name="ad25c722eaee1f28f8ed7b4d33a1f69ae"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad25c722eaee1f28f8ed7b4d33a1f69ae">&#9670;&#160;</a></span>generateJacobianMatrix()</h2>
+<a id="ab80eadd713a40e9263e5231737e956d0" name="ab80eadd713a40e9263e5231737e956d0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab80eadd713a40e9263e5231737e956d0">&#9670;&#160;</a></span>generateJacobianMatrix()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -491,7 +542,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">void gridfire::DefinedEngineView::generateJacobianMatrix </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_dynamic</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -514,7 +565,7 @@ Private Attributes</h2></td></tr>
 <p>Generates the Jacobian matrix for the active species. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y_dynamic</td><td>A vector of abundances for the active species. </td></tr>
+    <tr><td class="paramname">comp</td><td>A Composition object containing the current composition of the system </td></tr>
     <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>The density in g/cm^3.</td></tr>
   </table>
@@ -527,7 +578,7 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a21d15531309456ee83f7675251e7a1bf">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -584,7 +635,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -593,14 +644,14 @@ Private Attributes</h2></td></tr>
 <dl class="section return"><dt>Returns</dt><dd>Const reference to the underlying engine.</dd></dl>
 <p>This method must be implemented by derived classes to provide access to the base engine. The returned reference should remain valid for the lifetime of the <a class="el" href="classgridfire_1_1_engine_view.html" title="Abstract base class for a &quot;view&quot; of a reaction network engine.">EngineView</a>.</p>
 <p>Example: </p><div class="fragment"><div class="line"><span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>&amp; engine = myView.getBaseEngine();</div>
-<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> engine_abstract.h:130</div></div>
+<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> engine_abstract.h:142</div></div>
 </div><!-- fragment --> 
 <p>Implements <a class="el" href="classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6">gridfire::EngineView&lt; DynamicEngine &gt;</a>.</p>
 
 </div>
 </div>
-<a id="a273b175049f5ce7b9208e931ad139e1b" name="a273b175049f5ce7b9208e931ad139e1b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a273b175049f5ce7b9208e931ad139e1b">&#9670;&#160;</a></span>getJacobianMatrixEntry()</h2>
+<a id="aa49532266ff959ac66f501336f102ce8" name="aa49532266ff959ac66f501336f102ce8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa49532266ff959ac66f501336f102ce8">&#9670;&#160;</a></span>getJacobianMatrixEntry()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -611,17 +662,17 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">double gridfire::DefinedEngineView::getJacobianMatrixEntry </td>
           <td>(</td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>i_defined</em></span>, </td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>rowSpecies</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>j_defined</em></span>&#160;) const</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>colSpecies</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -629,12 +680,12 @@ Private Attributes</h2></td></tr>
 <p>Gets an entry from the Jacobian matrix for the active species. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">i_defined</td><td>The row index (species index) in the defined matrix. </td></tr>
-    <tr><td class="paramname">j_defined</td><td>The column index (species index) in the defined matrix. </td></tr>
+    <tr><td class="paramname">rowSpecies</td><td>The species corresponding to the row index. </td></tr>
+    <tr><td class="paramname">colSpecies</td><td>The species corresponding to the column index. </td></tr>
   </table>
   </dd>
 </dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the Jacobian matrix at (i_defined, j_defined).</dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>The value of the Jacobian matrix at (row species index, col species index).</dd></dl>
 <dl class="exception"><dt>Exceptions</dt><dd>
   <table class="exception">
     <tr><td class="paramname">std::runtime_error</td><td>If the view is stale. </td></tr>
@@ -643,12 +694,12 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a88dbf350dc0ea3e2b64d825f489e0d60">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="ae03b4f9afac03d4011a4d7cf0423535d" name="ae03b4f9afac03d4011a4d7cf0423535d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae03b4f9afac03d4011a4d7cf0423535d">&#9670;&#160;</a></span>getNetworkReactions()</h2>
+<a id="a5f9db5a9287aa03b2fa4d516e9a576b6" name="a5f9db5a9287aa03b2fa4d516e9a576b6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5f9db5a9287aa03b2fa4d516e9a576b6">&#9670;&#160;</a></span>getNetworkReactions()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -657,7 +708,7 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp; gridfire::DefinedEngineView::getNetworkReactions </td>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp; gridfire::DefinedEngineView::getNetworkReactions </td>
           <td>(</td>
           <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
           <td> const</td>
@@ -665,13 +716,13 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
 <p>Gets the set of active logical reactions in the network. </p>
-<dl class="section return"><dt>Returns</dt><dd>Reference to the <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31" title="A set of logical reactions.">LogicalReactionSet</a> containing all active reactions.</dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>Reference to the LogicalReactionSet containing all active reactions.</dd></dl>
 <dl class="exception"><dt>Exceptions</dt><dd>
   <table class="exception">
     <tr><td class="paramname">std::runtime_error</td><td>If the view is stale. </td></tr>
@@ -679,7 +730,7 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#af496e04f7be9a0a51ac65dc95f901ffe">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -701,7 +752,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -743,8 +794,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a3d58e36ed8a6a0d82bb65e91090f7491" name="a3d58e36ed8a6a0d82bb65e91090f7491"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3d58e36ed8a6a0d82bb65e91090f7491">&#9670;&#160;</a></span>getSpeciesDestructionTimescales()</h2>
+<a id="a7bcf169ba1e12e3356d4bcc27c3fc554" name="a7bcf169ba1e12e3356d4bcc27c3fc554"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7bcf169ba1e12e3356d4bcc27c3fc554">&#9670;&#160;</a></span>getSpeciesDestructionTimescales()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -755,17 +806,17 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt; gridfire::DefinedEngineView::getSpeciesDestructionTimescales </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_defined</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -775,12 +826,12 @@ Private Attributes</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a25c040d3078f6ff2ef38f733eb68f1fa">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="abfee22688617ffe91c69be93049c89b3" name="abfee22688617ffe91c69be93049c89b3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abfee22688617ffe91c69be93049c89b3">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
+<a id="af3b355ffcda6a8f2841184cc56e3761a" name="af3b355ffcda6a8f2841184cc56e3761a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af3b355ffcda6a8f2841184cc56e3761a">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -789,7 +840,7 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">int gridfire::DefinedEngineView::getSpeciesIndex </td>
+          <td class="memname">size_t gridfire::DefinedEngineView::getSpeciesIndex </td>
           <td>(</td>
           <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
           <td> const</td>
@@ -811,12 +862,12 @@ Private Attributes</h2></td></tr>
 </dl>
 <p>This method allows querying the index of a specific species in the engine's internal representation. It is useful for accessing species data efficiently. </p>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a8f66fb76c9f983ee93bf8b95cdc85596">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="ac8daafabbc76f4b6811bede241a03d72" name="ac8daafabbc76f4b6811bede241a03d72"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac8daafabbc76f4b6811bede241a03d72">&#9670;&#160;</a></span>getSpeciesTimescales()</h2>
+<a id="a18f46d92ea7e04068ad9e7af4ed605a8" name="a18f46d92ea7e04068ad9e7af4ed605a8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a18f46d92ea7e04068ad9e7af4ed605a8">&#9670;&#160;</a></span>getSpeciesTimescales()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -827,17 +878,17 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">std::expected&lt; std::unordered_map&lt; Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt; gridfire::DefinedEngineView::getSpeciesTimescales </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_defined</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -850,7 +901,7 @@ Private Attributes</h2></td></tr>
 <p>Computes timescales for all active species in the network. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y_defined</td><td>Vector of current abundances for the active species. </td></tr>
+    <tr><td class="paramname">comp</td><td>A Composition object containing the current composition of the system </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -864,12 +915,12 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ae7114f5ebc6667b5e5971c0450ed03d9">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="afa2820971397114d788730cc33feefe2" name="afa2820971397114d788730cc33feefe2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afa2820971397114d788730cc33feefe2">&#9670;&#160;</a></span>getStoichiometryMatrixEntry()</h2>
+<a id="af1843cfd2a95bfa46ab40d4c4de11ef9" name="af1843cfd2a95bfa46ab40d4c4de11ef9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af1843cfd2a95bfa46ab40d4c4de11ef9">&#9670;&#160;</a></span>getStoichiometryMatrixEntry()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -880,17 +931,17 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">int gridfire::DefinedEngineView::getStoichiometryMatrixEntry </td>
           <td>(</td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>speciesIndex_defined</em></span>, </td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>reactionIndex_defined</em></span>&#160;) const</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reaction</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -898,8 +949,8 @@ Private Attributes</h2></td></tr>
 <p>Gets an entry from the stoichiometry matrix for the active species and reactions. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">speciesIndex_defined</td><td>The index of the species in the defined species list. </td></tr>
-    <tr><td class="paramname">reactionIndex_defined</td><td>The index of the reaction in the defined reaction list. </td></tr>
+    <tr><td class="paramname">species</td><td>The species for which to get the stoichiometric coefficient. </td></tr>
+    <tr><td class="paramname">reaction</td><td>The reaction for which to get the stoichiometric coefficient. </td></tr>
   </table>
   </dd>
 </dl>
@@ -912,7 +963,7 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad19c8451b6f624e2938f771cc067d5c1">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -961,7 +1012,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel private">private</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -1032,7 +1083,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel private">private</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -1066,7 +1117,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel private">private</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -1106,7 +1157,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel private">private</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -1165,8 +1216,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a9736edfb7c9148b60de30d50c0d3530d" name="a9736edfb7c9148b60de30d50c0d3530d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9736edfb7c9148b60de30d50c0d3530d">&#9670;&#160;</a></span>setNetworkReactions()</h2>
+<a id="a655e74357cce822c4508069a3bcac2c9" name="a655e74357cce822c4508069a3bcac2c9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a655e74357cce822c4508069a3bcac2c9">&#9670;&#160;</a></span>setNetworkReactions()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1177,7 +1228,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">void gridfire::DefinedEngineView::setNetworkReactions </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -1188,7 +1239,7 @@ Private Attributes</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a49025489901e22a20cdf99b455ff2ff0">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -1290,8 +1341,8 @@ Private Attributes</h2></td></tr>
 </div>
 </div>
 <h2 class="groupheader">Member Data Documentation</h2>
-<a id="a373d4a83f30527a1bfaf1d74ad14c965" name="a373d4a83f30527a1bfaf1d74ad14c965"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a373d4a83f30527a1bfaf1d74ad14c965">&#9670;&#160;</a></span>m_activeReactions</h2>
+<a id="a824fe65ae22fa856051f2652764a0bb6" name="a824fe65ae22fa856051f2652764a0bb6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a824fe65ae22fa856051f2652764a0bb6">&#9670;&#160;</a></span>m_activeReactions</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1300,7 +1351,7 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> gridfire::DefinedEngineView::m_activeReactions</td>
+          <td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> gridfire::DefinedEngineView::m_activeReactions</td>
         </tr>
       </table>
   </td>
diff --git a/docs/html/classgridfire_1_1_defined_engine_view.js b/docs/html/classgridfire_1_1_defined_engine_view.js
index e8b263ad..eaf86bf8 100644
--- a/docs/html/classgridfire_1_1_defined_engine_view.js
+++ b/docs/html/classgridfire_1_1_defined_engine_view.js
@@ -1,22 +1,23 @@
 var classgridfire_1_1_defined_engine_view =
 [
     [ "DefinedEngineView", "classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92", null ],
-    [ "calculateMolarReactionFlow", "classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032", null ],
-    [ "calculateRHSAndEnergy", "classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d", null ],
+    [ "calculateEpsDerivatives", "classgridfire_1_1_defined_engine_view.html#a06aca977aafb4784fd167acb8c02dda2", null ],
+    [ "calculateMolarReactionFlow", "classgridfire_1_1_defined_engine_view.html#a74298377d0432ae3d577be0e9e6052b3", null ],
+    [ "calculateRHSAndEnergy", "classgridfire_1_1_defined_engine_view.html#af273b29d7700cdc34da6e2712fffc5c2", null ],
     [ "collect", "classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e", null ],
     [ "constructReactionIndexMap", "classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68", null ],
     [ "constructSpeciesIndexMap", "classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985", null ],
-    [ "generateJacobianMatrix", "classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae", null ],
+    [ "generateJacobianMatrix", "classgridfire_1_1_defined_engine_view.html#ab80eadd713a40e9263e5231737e956d0", null ],
     [ "generateStoichiometryMatrix", "classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6", null ],
     [ "getBaseEngine", "classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484", null ],
-    [ "getJacobianMatrixEntry", "classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b", null ],
-    [ "getNetworkReactions", "classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d", null ],
+    [ "getJacobianMatrixEntry", "classgridfire_1_1_defined_engine_view.html#aa49532266ff959ac66f501336f102ce8", null ],
+    [ "getNetworkReactions", "classgridfire_1_1_defined_engine_view.html#a5f9db5a9287aa03b2fa4d516e9a576b6", null ],
     [ "getNetworkSpecies", "classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211", null ],
     [ "getScreeningModel", "classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c", null ],
-    [ "getSpeciesDestructionTimescales", "classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491", null ],
-    [ "getSpeciesIndex", "classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3", null ],
-    [ "getSpeciesTimescales", "classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72", null ],
-    [ "getStoichiometryMatrixEntry", "classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2", null ],
+    [ "getSpeciesDestructionTimescales", "classgridfire_1_1_defined_engine_view.html#a7bcf169ba1e12e3356d4bcc27c3fc554", null ],
+    [ "getSpeciesIndex", "classgridfire_1_1_defined_engine_view.html#af3b355ffcda6a8f2841184cc56e3761a", null ],
+    [ "getSpeciesTimescales", "classgridfire_1_1_defined_engine_view.html#a18f46d92ea7e04068ad9e7af4ed605a8", null ],
+    [ "getStoichiometryMatrixEntry", "classgridfire_1_1_defined_engine_view.html#af1843cfd2a95bfa46ab40d4c4de11ef9", null ],
     [ "isStale", "classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87", null ],
     [ "mapFullToView", "classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873", null ],
     [ "mapNetInToMolarAbundanceVector", "classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2", null ],
@@ -24,11 +25,11 @@ var classgridfire_1_1_defined_engine_view =
     [ "mapViewToFullReactionIndex", "classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1", null ],
     [ "mapViewToFullSpeciesIndex", "classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a", null ],
     [ "primeEngine", "classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460", null ],
-    [ "setNetworkReactions", "classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d", null ],
+    [ "setNetworkReactions", "classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9", null ],
     [ "setScreeningModel", "classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258", null ],
     [ "update", "classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae", null ],
     [ "validateNetworkState", "classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0", null ],
-    [ "m_activeReactions", "classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965", null ],
+    [ "m_activeReactions", "classgridfire_1_1_defined_engine_view.html#a824fe65ae22fa856051f2652764a0bb6", null ],
     [ "m_activeSpecies", "classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae", null ],
     [ "m_baseEngine", "classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195", null ],
     [ "m_isStale", "classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382", null ],
diff --git a/docs/html/classgridfire_1_1_dynamic_engine-members.html b/docs/html/classgridfire_1_1_dynamic_engine-members.html
index 9d868b8a..362cd966 100644
--- a/docs/html/classgridfire_1_1_dynamic_engine-members.html
+++ b/docs/html/classgridfire_1_1_dynamic_engine-members.html
@@ -105,28 +105,29 @@ $(function(){initNavTree('classgridfire_1_1_dynamic_engine.html',''); initResiza
 
 <p>This is the complete list of members for <a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>, including all inherited members.</p>
 <table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb">calculateRHSAndEnergy</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d">generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7">generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f">generateStoichiometryMatrix</a>()=0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07">getJacobianMatrixEntry</a>(int i, int j) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037">getNetworkReactions</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3">getNetworkSpecies</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0">getScreeningModel</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6">getSpeciesDestructionTimescales</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813">getSpeciesTimescales</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f">getStoichiometryMatrixEntry</a>(int speciesIndex, int reactionIndex) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398">isStale</a>(const NetIn &amp;netIn)=0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e">primeEngine</a>(const NetIn &amp;netIn)=0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf">rebuild</a>(const fourdst::composition::Composition &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f">setNetworkReactions</a>(const reaction::LogicalReactionSet &amp;reactions)=0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd">setScreeningModel</a>(screening::ScreeningType model)=0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a">update</a>(const NetIn &amp;netIn)=0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a264bd5a8891c8c5f0dff32867effe547">calculateEpsDerivatives</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a39cf5b738eea0a275bf8c0eb5789fab3">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740">calculateRHSAndEnergy</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a21d15531309456ee83f7675251e7a1bf">generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd">generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f">generateStoichiometryMatrix</a>()=0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a88dbf350dc0ea3e2b64d825f489e0d60">getJacobianMatrixEntry</a>(const fourdst::atomic::Species &amp;rowSpecies, const fourdst::atomic::Species &amp;colSpecies) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#af496e04f7be9a0a51ac65dc95f901ffe">getNetworkReactions</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3">getNetworkSpecies</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0">getScreeningModel</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a25c040d3078f6ff2ef38f733eb68f1fa">getSpeciesDestructionTimescales</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a8f66fb76c9f983ee93bf8b95cdc85596">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#ae7114f5ebc6667b5e5971c0450ed03d9">getSpeciesTimescales</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#ad19c8451b6f624e2938f771cc067d5c1">getStoichiometryMatrixEntry</a>(const fourdst::atomic::Species &amp;species, const reaction::Reaction &amp;reaction) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398">isStale</a>(const NetIn &amp;netIn)=0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e">primeEngine</a>(const NetIn &amp;netIn)=0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf">rebuild</a>(const fourdst::composition::Composition &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a49025489901e22a20cdf99b455ff2ff0">setNetworkReactions</a>(const reaction::ReactionSet &amp;reactions)=0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd">setScreeningModel</a>(screening::ScreeningType model)=0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a">update</a>(const NetIn &amp;netIn)=0</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/classgridfire_1_1_dynamic_engine.html b/docs/html/classgridfire_1_1_dynamic_engine.html
index 9599bbfb..07241f31 100644
--- a/docs/html/classgridfire_1_1_dynamic_engine.html
+++ b/docs/html/classgridfire_1_1_dynamic_engine.html
@@ -129,33 +129,36 @@ Inheritance diagram for gridfire::DynamicEngine:</div>
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
 Public Member Functions</h2></td></tr>
-<tr class="memitem:a29bdd4231c29c3a4e524ad6ca66a127d" id="r_a29bdd4231c29c3a4e524ad6ca66a127d"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a29bdd4231c29c3a4e524ad6ca66a127d">generateJacobianMatrix</a> (const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho) const =0</td></tr>
-<tr class="memdesc:a29bdd4231c29c3a4e524ad6ca66a127d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate the Jacobian matrix for the current state.  <br /></td></tr>
-<tr class="separator:a29bdd4231c29c3a4e524ad6ca66a127d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a818d942efa843959393e4eed3263b7e7" id="r_a818d942efa843959393e4eed3263b7e7"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a818d942efa843959393e4eed3263b7e7">generateJacobianMatrix</a> (const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const <a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">SparsityPattern</a> &amp;sparsityPattern) const</td></tr>
-<tr class="separator:a818d942efa843959393e4eed3263b7e7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a05d15ff35a6bc06a2fa7eda19838bd07" id="r_a05d15ff35a6bc06a2fa7eda19838bd07"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a05d15ff35a6bc06a2fa7eda19838bd07">getJacobianMatrixEntry</a> (int i, int j) const =0</td></tr>
-<tr class="memdesc:a05d15ff35a6bc06a2fa7eda19838bd07"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get an entry from the previously generated Jacobian matrix.  <br /></td></tr>
-<tr class="separator:a05d15ff35a6bc06a2fa7eda19838bd07"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a21d15531309456ee83f7675251e7a1bf" id="r_a21d15531309456ee83f7675251e7a1bf"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a21d15531309456ee83f7675251e7a1bf">generateJacobianMatrix</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:a21d15531309456ee83f7675251e7a1bf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate the Jacobian matrix for the current state.  <br /></td></tr>
+<tr class="separator:a21d15531309456ee83f7675251e7a1bf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a11d602a708af4629f51873b17f7b8dbd" id="r_a11d602a708af4629f51873b17f7b8dbd"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a11d602a708af4629f51873b17f7b8dbd">generateJacobianMatrix</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho, const <a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">SparsityPattern</a> &amp;sparsityPattern) const</td></tr>
+<tr class="separator:a11d602a708af4629f51873b17f7b8dbd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a88dbf350dc0ea3e2b64d825f489e0d60" id="r_a88dbf350dc0ea3e2b64d825f489e0d60"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a88dbf350dc0ea3e2b64d825f489e0d60">getJacobianMatrixEntry</a> (const fourdst::atomic::Species &amp;rowSpecies, const fourdst::atomic::Species &amp;colSpecies) const =0</td></tr>
+<tr class="memdesc:a88dbf350dc0ea3e2b64d825f489e0d60"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get an entry from the previously generated Jacobian matrix.  <br /></td></tr>
+<tr class="separator:a88dbf350dc0ea3e2b64d825f489e0d60"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:aeae6d84ef74d88fd2cdf07b82e98a16f" id="r_aeae6d84ef74d88fd2cdf07b82e98a16f"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aeae6d84ef74d88fd2cdf07b82e98a16f">generateStoichiometryMatrix</a> ()=0</td></tr>
 <tr class="memdesc:aeae6d84ef74d88fd2cdf07b82e98a16f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate the stoichiometry matrix for the network.  <br /></td></tr>
 <tr class="separator:aeae6d84ef74d88fd2cdf07b82e98a16f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afa108dd5227dbb1045e90d7b3bd8b84f" id="r_afa108dd5227dbb1045e90d7b3bd8b84f"><td class="memItemLeft" align="right" valign="top">virtual int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afa108dd5227dbb1045e90d7b3bd8b84f">getStoichiometryMatrixEntry</a> (int speciesIndex, int reactionIndex) const =0</td></tr>
-<tr class="memdesc:afa108dd5227dbb1045e90d7b3bd8b84f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get an entry from the stoichiometry matrix.  <br /></td></tr>
-<tr class="separator:afa108dd5227dbb1045e90d7b3bd8b84f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6633b1757c41dd9e1c397333f4f9e785" id="r_a6633b1757c41dd9e1c397333f4f9e785"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6633b1757c41dd9e1c397333f4f9e785">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const =0</td></tr>
-<tr class="memdesc:a6633b1757c41dd9e1c397333f4f9e785"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the molar reaction flow for a given reaction.  <br /></td></tr>
-<tr class="separator:a6633b1757c41dd9e1c397333f4f9e785"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad2a82099edbb374bbb2c9509ccdb1037" id="r_ad2a82099edbb374bbb2c9509ccdb1037"><td class="memItemLeft" align="right" valign="top">virtual const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad2a82099edbb374bbb2c9509ccdb1037">getNetworkReactions</a> () const =0</td></tr>
-<tr class="memdesc:ad2a82099edbb374bbb2c9509ccdb1037"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the set of logical reactions in the network.  <br /></td></tr>
-<tr class="separator:ad2a82099edbb374bbb2c9509ccdb1037"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afb2ec904d88fc8aab516db4059d0e00f" id="r_afb2ec904d88fc8aab516db4059d0e00f"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afb2ec904d88fc8aab516db4059d0e00f">setNetworkReactions</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;reactions)=0</td></tr>
-<tr class="separator:afb2ec904d88fc8aab516db4059d0e00f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6772ac384b4c3d3e91712041e4aaa813" id="r_a6772ac384b4c3d3e91712041e4aaa813"><td class="memItemLeft" align="right" valign="top">virtual std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6772ac384b4c3d3e91712041e4aaa813">getSpeciesTimescales</a> (const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const =0</td></tr>
-<tr class="memdesc:a6772ac384b4c3d3e91712041e4aaa813"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute timescales for all species in the network.  <br /></td></tr>
-<tr class="separator:a6772ac384b4c3d3e91712041e4aaa813"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6ca0f315f75252ca505507a61556dda6" id="r_a6ca0f315f75252ca505507a61556dda6"><td class="memItemLeft" align="right" valign="top">virtual std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6ca0f315f75252ca505507a61556dda6">getSpeciesDestructionTimescales</a> (const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const =0</td></tr>
-<tr class="separator:a6ca0f315f75252ca505507a61556dda6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad19c8451b6f624e2938f771cc067d5c1" id="r_ad19c8451b6f624e2938f771cc067d5c1"><td class="memItemLeft" align="right" valign="top">virtual int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad19c8451b6f624e2938f771cc067d5c1">getStoichiometryMatrixEntry</a> (const fourdst::atomic::Species &amp;species, const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction) const =0</td></tr>
+<tr class="memdesc:ad19c8451b6f624e2938f771cc067d5c1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get an entry from the stoichiometry matrix.  <br /></td></tr>
+<tr class="separator:ad19c8451b6f624e2938f771cc067d5c1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a39cf5b738eea0a275bf8c0eb5789fab3" id="r_a39cf5b738eea0a275bf8c0eb5789fab3"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a39cf5b738eea0a275bf8c0eb5789fab3">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:a39cf5b738eea0a275bf8c0eb5789fab3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the molar reaction flow for a given reaction.  <br /></td></tr>
+<tr class="separator:a39cf5b738eea0a275bf8c0eb5789fab3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a264bd5a8891c8c5f0dff32867effe547" id="r_a264bd5a8891c8c5f0dff32867effe547"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a264bd5a8891c8c5f0dff32867effe547">calculateEpsDerivatives</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:a264bd5a8891c8c5f0dff32867effe547"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the derivatives of the energy generation rate with respect to T and rho.  <br /></td></tr>
+<tr class="separator:a264bd5a8891c8c5f0dff32867effe547"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af496e04f7be9a0a51ac65dc95f901ffe" id="r_af496e04f7be9a0a51ac65dc95f901ffe"><td class="memItemLeft" align="right" valign="top">virtual const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af496e04f7be9a0a51ac65dc95f901ffe">getNetworkReactions</a> () const =0</td></tr>
+<tr class="memdesc:af496e04f7be9a0a51ac65dc95f901ffe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the set of logical reactions in the network.  <br /></td></tr>
+<tr class="separator:af496e04f7be9a0a51ac65dc95f901ffe"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a49025489901e22a20cdf99b455ff2ff0" id="r_a49025489901e22a20cdf99b455ff2ff0"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a49025489901e22a20cdf99b455ff2ff0">setNetworkReactions</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions)=0</td></tr>
+<tr class="separator:a49025489901e22a20cdf99b455ff2ff0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae7114f5ebc6667b5e5971c0450ed03d9" id="r_ae7114f5ebc6667b5e5971c0450ed03d9"><td class="memItemLeft" align="right" valign="top">virtual std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae7114f5ebc6667b5e5971c0450ed03d9">getSpeciesTimescales</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:ae7114f5ebc6667b5e5971c0450ed03d9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute timescales for all species in the network.  <br /></td></tr>
+<tr class="separator:ae7114f5ebc6667b5e5971c0450ed03d9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a25c040d3078f6ff2ef38f733eb68f1fa" id="r_a25c040d3078f6ff2ef38f733eb68f1fa"><td class="memItemLeft" align="right" valign="top">virtual std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a25c040d3078f6ff2ef38f733eb68f1fa">getSpeciesDestructionTimescales</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="separator:a25c040d3078f6ff2ef38f733eb68f1fa"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:aa799ff785e7e79bf35b11efd55f6282a" id="r_aa799ff785e7e79bf35b11efd55f6282a"><td class="memItemLeft" align="right" valign="top">virtual fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa799ff785e7e79bf35b11efd55f6282a">update</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn)=0</td></tr>
 <tr class="memdesc:aa799ff785e7e79bf35b11efd55f6282a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update the internal state of the engine.  <br /></td></tr>
 <tr class="separator:aa799ff785e7e79bf35b11efd55f6282a"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -167,9 +170,9 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:a7a203f8e0f3a6744ddc912dfbcfdbcc0" id="r_a7a203f8e0f3a6744ddc912dfbcfdbcc0"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7a203f8e0f3a6744ddc912dfbcfdbcc0">getScreeningModel</a> () const =0</td></tr>
 <tr class="memdesc:a7a203f8e0f3a6744ddc912dfbcfdbcc0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the current electron screening model.  <br /></td></tr>
 <tr class="separator:a7a203f8e0f3a6744ddc912dfbcfdbcc0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad3d56a8b9161b9cc7f4da51f6bf7e8c9" id="r_ad3d56a8b9161b9cc7f4da51f6bf7e8c9"><td class="memItemLeft" align="right" valign="top">virtual int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad3d56a8b9161b9cc7f4da51f6bf7e8c9">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const =0</td></tr>
-<tr class="memdesc:ad3d56a8b9161b9cc7f4da51f6bf7e8c9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the index of a species in the network.  <br /></td></tr>
-<tr class="separator:ad3d56a8b9161b9cc7f4da51f6bf7e8c9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8f66fb76c9f983ee93bf8b95cdc85596" id="r_a8f66fb76c9f983ee93bf8b95cdc85596"><td class="memItemLeft" align="right" valign="top">virtual size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8f66fb76c9f983ee93bf8b95cdc85596">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const =0</td></tr>
+<tr class="memdesc:a8f66fb76c9f983ee93bf8b95cdc85596"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the index of a species in the network.  <br /></td></tr>
+<tr class="separator:a8f66fb76c9f983ee93bf8b95cdc85596"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a55f1b7e5ebe2840e1d7c54665ca5411a" id="r_a55f1b7e5ebe2840e1d7c54665ca5411a"><td class="memItemLeft" align="right" valign="top">virtual std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a55f1b7e5ebe2840e1d7c54665ca5411a">mapNetInToMolarAbundanceVector</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn) const =0</td></tr>
 <tr class="memdesc:a55f1b7e5ebe2840e1d7c54665ca5411a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map a <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> object to a vector of molar abundances.  <br /></td></tr>
 <tr class="separator:a55f1b7e5ebe2840e1d7c54665ca5411a"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -189,9 +192,9 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:a020e1b493d6964cafdad08fde697ceb3 inherit pub_methods_classgridfire_1_1_engine" id="r_a020e1b493d6964cafdad08fde697ceb3"><td class="memItemLeft" align="right" valign="top">virtual const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3">getNetworkSpecies</a> () const =0</td></tr>
 <tr class="memdesc:a020e1b493d6964cafdad08fde697ceb3 inherit pub_methods_classgridfire_1_1_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the list of species in the network.  <br /></td></tr>
 <tr class="separator:a020e1b493d6964cafdad08fde697ceb3 inherit pub_methods_classgridfire_1_1_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a89f714d19b84a93a004a7afbb487a6cb inherit pub_methods_classgridfire_1_1_engine" id="r_a89f714d19b84a93a004a7afbb487a6cb"><td class="memItemLeft" align="right" valign="top">virtual std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb">calculateRHSAndEnergy</a> (const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const =0</td></tr>
-<tr class="memdesc:a89f714d19b84a93a004a7afbb487a6cb inherit pub_methods_classgridfire_1_1_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the right-hand side (dY/dt) and energy generation.  <br /></td></tr>
-<tr class="separator:a89f714d19b84a93a004a7afbb487a6cb inherit pub_methods_classgridfire_1_1_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:add48d3af9ebde17717e42e220e349740 inherit pub_methods_classgridfire_1_1_engine" id="r_add48d3af9ebde17717e42e220e349740"><td class="memItemLeft" align="right" valign="top">virtual std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740">calculateRHSAndEnergy</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:add48d3af9ebde17717e42e220e349740 inherit pub_methods_classgridfire_1_1_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the right-hand side (dY/dt) and energy generation.  <br /></td></tr>
+<tr class="separator:add48d3af9ebde17717e42e220e349740 inherit pub_methods_classgridfire_1_1_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
 <div class="textblock"><p>Abstract class for engines supporting Jacobian and stoichiometry operations. </p>
@@ -204,8 +207,56 @@ Public Member Functions</h2></td></tr>
 </ul>
 <p>Intended usage: Derive from this class to implement engines that support advanced solver features such as implicit integration, sensitivity analysis, QSE (Quasi-Steady-State Equilibrium) handling, and more. </p>
 </div><h2 class="groupheader">Member Function Documentation</h2>
-<a id="a6633b1757c41dd9e1c397333f4f9e785" name="a6633b1757c41dd9e1c397333f4f9e785"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6633b1757c41dd9e1c397333f4f9e785">&#9670;&#160;</a></span>calculateMolarReactionFlow()</h2>
+<a id="a264bd5a8891c8c5f0dff32867effe547" name="a264bd5a8891c8c5f0dff32867effe547"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a264bd5a8891c8c5f0dff32867effe547">&#9670;&#160;</a></span>calculateEpsDerivatives()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a> gridfire::DynamicEngine::calculateEpsDerivatives </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculate the derivatives of the energy generation rate with respect to T and rho. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a> containing dEps/dT and dEps/dRho.</dd></dl>
+<p>This method computes the partial derivatives of the specific nuclear energy generation rate with respect to temperature and density for the current state. </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a5d1b50afd2fba6af75e976a4f9c9dcbc">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a06aca977aafb4784fd167acb8c02dda2">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ae0c9159cc3467fd85d1a5895f1786c47">gridfire::GraphEngine</a>, and <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a99f9116d5a18afcbf0e808ef111d1be8">gridfire::MultiscalePartitioningEngineView</a>.</p>
+
+</div>
+</div>
+<a id="a39cf5b738eea0a275bf8c0eb5789fab3" name="a39cf5b738eea0a275bf8c0eb5789fab3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a39cf5b738eea0a275bf8c0eb5789fab3">&#9670;&#160;</a></span>calculateMolarReactionFlow()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -221,7 +272,7 @@ Public Member Functions</h2></td></tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -245,7 +296,7 @@ Public Member Functions</h2></td></tr>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
     <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the flow. </td></tr>
-    <tr><td class="paramname">Y</td><td>Vector of current abundances. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -254,12 +305,12 @@ Public Member Functions</h2></td></tr>
 <dl class="section return"><dt>Returns</dt><dd>Molar flow rate for the reaction (e.g., mol/g/s).</dd></dl>
 <p>This method computes the net rate at which the given reaction proceeds under the current state. </p>
 
-<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044">gridfire::MultiscalePartitioningEngineView</a>, and <a class="el" href="class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a">PyDynamicEngine</a>.</p>
+<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a3c1e27b45051c4ba481a2b87513982ed">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a74298377d0432ae3d577be0e9e6052b3">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a1675859971f0bd2db0650f8da54ed7eb">gridfire::GraphEngine</a>, and <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a87687a960f263a4e1bc035e4d0a345db">gridfire::MultiscalePartitioningEngineView</a>.</p>
 
 </div>
 </div>
-<a id="a29bdd4231c29c3a4e524ad6ca66a127d" name="a29bdd4231c29c3a4e524ad6ca66a127d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a29bdd4231c29c3a4e524ad6ca66a127d">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[1/2]</span></h2>
+<a id="a21d15531309456ee83f7675251e7a1bf" name="a21d15531309456ee83f7675251e7a1bf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a21d15531309456ee83f7675251e7a1bf">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[1/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -270,7 +321,7 @@ Public Member Functions</h2></td></tr>
         <tr>
           <td class="memname">virtual void gridfire::DynamicEngine::generateJacobianMatrix </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_dynamic</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -293,20 +344,20 @@ Public Member Functions</h2></td></tr>
 <p>Generate the Jacobian matrix for the current state. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y_dynamic</td><td>Vector of current abundances. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3.</td></tr>
   </table>
   </dd>
 </dl>
-<p>This method must compute and store the Jacobian matrix (∂(dY/dt)_i/∂Y_j) for the current state. The matrix can then be accessed via <a class="el" href="#a05d15ff35a6bc06a2fa7eda19838bd07" title="Get an entry from the previously generated Jacobian matrix.">getJacobianMatrixEntry()</a>. </p>
+<p>This method must compute and store the Jacobian matrix (∂(dY/dt)_i/∂Y_j) for the current state. The matrix can then be accessed via <a class="el" href="#a88dbf350dc0ea3e2b64d825f489e0d60" title="Get an entry from the previously generated Jacobian matrix.">getJacobianMatrixEntry()</a>. </p>
 
-<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a03fc187d3d306b9058103b9522cbbaeb">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#acdf5ad8765290ea2b78170235aea391d">gridfire::MultiscalePartitioningEngineView</a>, and <a class="el" href="class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d">PyDynamicEngine</a>.</p>
+<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a8da7664cf483cba7f979f855a74c3559">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ab80eadd713a40e9263e5231737e956d0">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ae11f6267077025ca342e2e263ad87e5e">gridfire::GraphEngine</a>, and <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ab9f71bc9a1c0f98ec9cc1c7da00fd975">gridfire::MultiscalePartitioningEngineView</a>.</p>
 
 </div>
 </div>
-<a id="a818d942efa843959393e4eed3263b7e7" name="a818d942efa843959393e4eed3263b7e7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a818d942efa843959393e4eed3263b7e7">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[2/2]</span></h2>
+<a id="a11d602a708af4629f51873b17f7b8dbd" name="a11d602a708af4629f51873b17f7b8dbd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a11d602a708af4629f51873b17f7b8dbd">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[2/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -317,7 +368,7 @@ Public Member Functions</h2></td></tr>
         <tr>
           <td class="memname">virtual void gridfire::DynamicEngine::generateJacobianMatrix </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_dynamic</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -342,7 +393,7 @@ Public Member Functions</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p>Reimplemented in <a class="el" href="classgridfire_1_1_graph_engine.html#a9687eef88c97eeb7f8680acb230f8ac1">gridfire::GraphEngine</a>, and <a class="el" href="class_py_dynamic_engine.html#aa0f1fd3f0c0185395193d1b6897d64c5">PyDynamicEngine</a>.</p>
+<p>Reimplemented in <a class="el" href="classgridfire_1_1_graph_engine.html#a4e0bbc6448999e2ef06879270b7d3dec">gridfire::GraphEngine</a>.</p>
 
 </div>
 </div>
@@ -407,8 +458,8 @@ Public Member Functions</h2></td></tr>
 
 </div>
 </div>
-<a id="a05d15ff35a6bc06a2fa7eda19838bd07" name="a05d15ff35a6bc06a2fa7eda19838bd07"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a05d15ff35a6bc06a2fa7eda19838bd07">&#9670;&#160;</a></span>getJacobianMatrixEntry()</h2>
+<a id="a88dbf350dc0ea3e2b64d825f489e0d60" name="a88dbf350dc0ea3e2b64d825f489e0d60"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a88dbf350dc0ea3e2b64d825f489e0d60">&#9670;&#160;</a></span>getJacobianMatrixEntry()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -419,12 +470,12 @@ Public Member Functions</h2></td></tr>
         <tr>
           <td class="memname">virtual double gridfire::DynamicEngine::getJacobianMatrixEntry </td>
           <td>(</td>
-          <td class="paramtype">int</td>          <td class="paramname"><span class="paramname"><em>i</em></span>, </td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>rowSpecies</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">int</td>          <td class="paramname"><span class="paramname"><em>j</em></span>&#160;) const</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>colSpecies</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -437,20 +488,20 @@ Public Member Functions</h2></td></tr>
 <p>Get an entry from the previously generated Jacobian matrix. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">i</td><td>Row index (species index). </td></tr>
-    <tr><td class="paramname">j</td><td>Column index (species index). </td></tr>
+    <tr><td class="paramname">rowSpecies</td><td>The species corresponding to the row index (i) </td></tr>
+    <tr><td class="paramname">colSpecies</td><td>The species corresponding to the column index (j) </td></tr>
   </table>
   </dd>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>Value of the Jacobian matrix at (i, j).</dd></dl>
-<p>The Jacobian must have been generated by <a class="el" href="#a29bdd4231c29c3a4e524ad6ca66a127d" title="Generate the Jacobian matrix for the current state.">generateJacobianMatrix()</a> before calling this. </p>
+<p>The Jacobian must have been generated by <a class="el" href="#a21d15531309456ee83f7675251e7a1bf" title="Generate the Jacobian matrix for the current state.">generateJacobianMatrix()</a> before calling this. </p>
 
-<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ac961484383e86d9712a424728e068633">gridfire::MultiscalePartitioningEngineView</a>, and <a class="el" href="class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159">PyDynamicEngine</a>.</p>
+<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#adf3b8a5734983509ca02b7a1a480119f">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#aa49532266ff959ac66f501336f102ce8">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a8ab5308629b8707922e5954776254aa6">gridfire::GraphEngine</a>, and <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a586da5402750151fee5db2666785b6e4">gridfire::MultiscalePartitioningEngineView</a>.</p>
 
 </div>
 </div>
-<a id="ad2a82099edbb374bbb2c9509ccdb1037" name="ad2a82099edbb374bbb2c9509ccdb1037"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad2a82099edbb374bbb2c9509ccdb1037">&#9670;&#160;</a></span>getNetworkReactions()</h2>
+<a id="af496e04f7be9a0a51ac65dc95f901ffe" name="af496e04f7be9a0a51ac65dc95f901ffe"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af496e04f7be9a0a51ac65dc95f901ffe">&#9670;&#160;</a></span>getNetworkReactions()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -459,7 +510,7 @@ Public Member Functions</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">virtual const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp; gridfire::DynamicEngine::getNetworkReactions </td>
+          <td class="memname">virtual const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp; gridfire::DynamicEngine::getNetworkReactions </td>
           <td>(</td>
           <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
           <td> const</td>
@@ -473,9 +524,9 @@ Public Member Functions</h2></td></tr>
 </div><div class="memdoc">
 
 <p>Get the set of logical reactions in the network. </p>
-<dl class="section return"><dt>Returns</dt><dd>Reference to the <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31" title="A set of logical reactions.">LogicalReactionSet</a> containing all reactions. </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>Reference to the LogicalReactionSet containing all reactions. </dd></dl>
 
-<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ad751f2c1306895ee74a61f2071ca96eb">gridfire::MultiscalePartitioningEngineView</a>, and <a class="el" href="class_py_dynamic_engine.html#a5988cfba247631ba6c00795cafda9a38">PyDynamicEngine</a>.</p>
+<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a3247c1e6a76de5622223ee7b5ca3452a">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a5f9db5a9287aa03b2fa4d516e9a576b6">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a3b7f3ba85821165f58f168bc68f86b2d">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a253e51d6dc7226a863a123683049af61">gridfire::MultiscalePartitioningEngineView</a>, and <a class="el" href="class_py_dynamic_engine.html#a1d5143640666631501cf229bc491516e">PyDynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -512,8 +563,8 @@ Public Member Functions</h2></td></tr>
 
 </div>
 </div>
-<a id="a6ca0f315f75252ca505507a61556dda6" name="a6ca0f315f75252ca505507a61556dda6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6ca0f315f75252ca505507a61556dda6">&#9670;&#160;</a></span>getSpeciesDestructionTimescales()</h2>
+<a id="a25c040d3078f6ff2ef38f733eb68f1fa" name="a25c040d3078f6ff2ef38f733eb68f1fa"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a25c040d3078f6ff2ef38f733eb68f1fa">&#9670;&#160;</a></span>getSpeciesDestructionTimescales()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -524,7 +575,7 @@ Public Member Functions</h2></td></tr>
         <tr>
           <td class="memname">virtual std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt; gridfire::DynamicEngine::getSpeciesDestructionTimescales </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -544,12 +595,12 @@ Public Member Functions</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a522e78bce9ff062939572248d57f8cea">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#aef8f6bde24d27345067b71084330c7da">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aa38c367ef3c74d012ccd10521cd5a727">gridfire::MultiscalePartitioningEngineView</a>, and <a class="el" href="class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3">PyDynamicEngine</a>.</p>
+<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aa861db5f6fc4e85fb51f524e4e1367c6">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a7bcf169ba1e12e3356d4bcc27c3fc554">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a47df5a9c448dd1ce8654df819a6cc8ff">gridfire::GraphEngine</a>, and <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a14b0c7ec882b2ad2370f7aa729b9f9">gridfire::MultiscalePartitioningEngineView</a>.</p>
 
 </div>
 </div>
-<a id="ad3d56a8b9161b9cc7f4da51f6bf7e8c9" name="ad3d56a8b9161b9cc7f4da51f6bf7e8c9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad3d56a8b9161b9cc7f4da51f6bf7e8c9">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
+<a id="a8f66fb76c9f983ee93bf8b95cdc85596" name="a8f66fb76c9f983ee93bf8b95cdc85596"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8f66fb76c9f983ee93bf8b95cdc85596">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -558,7 +609,7 @@ Public Member Functions</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">virtual int gridfire::DynamicEngine::getSpeciesIndex </td>
+          <td class="memname">virtual size_t gridfire::DynamicEngine::getSpeciesIndex </td>
           <td>(</td>
           <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
           <td> const</td>
@@ -580,12 +631,12 @@ Public Member Functions</h2></td></tr>
 </dl>
 <p>This method allows querying the index of a specific species in the engine's internal representation. It is useful for accessing species data efficiently. </p>
 
-<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a9055feb245524a5a9549ace935f059ff">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a914f6abc61805cddaebcb8f3cf470dda">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a91d32b7197fcb27ee697d5bfde960f3f">gridfire::MultiscalePartitioningEngineView</a>, and <a class="el" href="class_py_dynamic_engine.html#a2ee1d745c1c21b9fcb652c96c42f1091">PyDynamicEngine</a>.</p>
+<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#abb811382522c31f6456787edd4f59ace">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#af3b355ffcda6a8f2841184cc56e3761a">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a9e426e6c178dd80bd58090489d3b2be9">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a8db21995e6878f4043f3a5a45bf36d5e">gridfire::MultiscalePartitioningEngineView</a>, and <a class="el" href="class_py_dynamic_engine.html#a95d10a7b240d543a1bc6c67ddf2dc8e0">PyDynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="a6772ac384b4c3d3e91712041e4aaa813" name="a6772ac384b4c3d3e91712041e4aaa813"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6772ac384b4c3d3e91712041e4aaa813">&#9670;&#160;</a></span>getSpeciesTimescales()</h2>
+<a id="ae7114f5ebc6667b5e5971c0450ed03d9" name="ae7114f5ebc6667b5e5971c0450ed03d9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae7114f5ebc6667b5e5971c0450ed03d9">&#9670;&#160;</a></span>getSpeciesTimescales()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -596,7 +647,7 @@ Public Member Functions</h2></td></tr>
         <tr>
           <td class="memname">virtual std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt; gridfire::DynamicEngine::getSpeciesTimescales </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -619,7 +670,7 @@ Public Member Functions</h2></td></tr>
 <p>Compute timescales for all species in the network. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y</td><td>Vector of current abundances. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -628,12 +679,12 @@ Public Member Functions</h2></td></tr>
 <dl class="section return"><dt>Returns</dt><dd>Map from Species to their characteristic timescales (s).</dd></dl>
 <p>This method estimates the timescale for abundance change of each species, which can be used for timestep control, diagnostics, and reaction network culling. </p>
 
-<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a560612347bbd5b7b380e990624d01105">gridfire::MultiscalePartitioningEngineView</a>, and <a class="el" href="class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22">PyDynamicEngine</a>.</p>
+<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a57a218c5a145f589531777c8615b7408">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a18f46d92ea7e04068ad9e7af4ed605a8">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a7dde968244f3c4934c7738445c709232">gridfire::GraphEngine</a>, and <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aea2c3d2ae6ddf77bd4a9b07b86f3306b">gridfire::MultiscalePartitioningEngineView</a>.</p>
 
 </div>
 </div>
-<a id="afa108dd5227dbb1045e90d7b3bd8b84f" name="afa108dd5227dbb1045e90d7b3bd8b84f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afa108dd5227dbb1045e90d7b3bd8b84f">&#9670;&#160;</a></span>getStoichiometryMatrixEntry()</h2>
+<a id="ad19c8451b6f624e2938f771cc067d5c1" name="ad19c8451b6f624e2938f771cc067d5c1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad19c8451b6f624e2938f771cc067d5c1">&#9670;&#160;</a></span>getStoichiometryMatrixEntry()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -644,12 +695,12 @@ Public Member Functions</h2></td></tr>
         <tr>
           <td class="memname">virtual int gridfire::DynamicEngine::getStoichiometryMatrixEntry </td>
           <td>(</td>
-          <td class="paramtype">int</td>          <td class="paramname"><span class="paramname"><em>speciesIndex</em></span>, </td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">int</td>          <td class="paramname"><span class="paramname"><em>reactionIndex</em></span>&#160;) const</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reaction</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -662,15 +713,15 @@ Public Member Functions</h2></td></tr>
 <p>Get an entry from the stoichiometry matrix. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">speciesIndex</td><td>Index of the species. </td></tr>
-    <tr><td class="paramname">reactionIndex</td><td>Index of the reaction. </td></tr>
+    <tr><td class="paramname">species</td><td>species to look up stoichiometry for. </td></tr>
+    <tr><td class="paramname">reaction</td><td>reaction to find </td></tr>
   </table>
   </dd>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>Stoichiometric coefficient for the species in the reaction.</dd></dl>
 <p>The stoichiometry matrix must have been generated by <a class="el" href="#aeae6d84ef74d88fd2cdf07b82e98a16f" title="Generate the stoichiometry matrix for the network.">generateStoichiometryMatrix()</a>. </p>
 
-<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a510b920dea726aef859ac1f6d051807e">gridfire::MultiscalePartitioningEngineView</a>, and <a class="el" href="class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83">PyDynamicEngine</a>.</p>
+<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#abe2ca6426e10cc6a10090eecf7098dbe">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#af1843cfd2a95bfa46ab40d4c4de11ef9">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ad90a2d770ebf098f0d6d5f5339961e95">gridfire::GraphEngine</a>, and <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7140384baaaa0bd05ca448a0d8fec471">gridfire::MultiscalePartitioningEngineView</a>.</p>
 
 </div>
 </div>
@@ -816,8 +867,8 @@ Public Member Functions</h2></td></tr>
 
 </div>
 </div>
-<a id="afb2ec904d88fc8aab516db4059d0e00f" name="afb2ec904d88fc8aab516db4059d0e00f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afb2ec904d88fc8aab516db4059d0e00f">&#9670;&#160;</a></span>setNetworkReactions()</h2>
+<a id="a49025489901e22a20cdf99b455ff2ff0" name="a49025489901e22a20cdf99b455ff2ff0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a49025489901e22a20cdf99b455ff2ff0">&#9670;&#160;</a></span>setNetworkReactions()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -828,7 +879,7 @@ Public Member Functions</h2></td></tr>
         <tr>
           <td class="memname">virtual void gridfire::DynamicEngine::setNetworkReactions </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -839,7 +890,7 @@ Public Member Functions</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#acb5fa7f03cd89b8c1b6b9ffdf3abb12e">gridfire::MultiscalePartitioningEngineView</a>, and <a class="el" href="class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6">PyDynamicEngine</a>.</p>
+<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#adedc8547568d643473bdfcc86040b488">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a52288e2629609c8438a3c9bc3f910016">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#af99f5e4871808188d00379c1c35868fe">gridfire::MultiscalePartitioningEngineView</a>, and <a class="el" href="class_py_dynamic_engine.html#af469cba3be850d53f659ec173f0eb4e4">PyDynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -916,7 +967,7 @@ Public Member Functions</h2></td></tr>
 <p>This method is intended to be implemented by derived classes to update their internal state based on the provided network conditions. For example, an adaptive engine might use this to re-evaluate which reactions and species are active. For other engines that do not support manually updating, this method might do nothing.</p>
 <dl class="section user"><dt>Usage Example:</dt><dd><div class="fragment"><div class="line"><a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a> input = { ... };</div>
 <div class="line">myEngine.update(input);</div>
-<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> network.h:53</div></div>
+<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> network.h:51</div></div>
 </div><!-- fragment --></dd></dl>
 <dl class="section post"><dt>Postcondition</dt><dd>The internal state of the engine is updated to reflect the new conditions. </dd></dl>
 
diff --git a/docs/html/classgridfire_1_1_dynamic_engine.js b/docs/html/classgridfire_1_1_dynamic_engine.js
index 01209d96..da030acb 100644
--- a/docs/html/classgridfire_1_1_dynamic_engine.js
+++ b/docs/html/classgridfire_1_1_dynamic_engine.js
@@ -1,22 +1,23 @@
 var classgridfire_1_1_dynamic_engine =
 [
-    [ "calculateMolarReactionFlow", "classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785", null ],
-    [ "generateJacobianMatrix", "classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d", null ],
-    [ "generateJacobianMatrix", "classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7", null ],
+    [ "calculateEpsDerivatives", "classgridfire_1_1_dynamic_engine.html#a264bd5a8891c8c5f0dff32867effe547", null ],
+    [ "calculateMolarReactionFlow", "classgridfire_1_1_dynamic_engine.html#a39cf5b738eea0a275bf8c0eb5789fab3", null ],
+    [ "generateJacobianMatrix", "classgridfire_1_1_dynamic_engine.html#a21d15531309456ee83f7675251e7a1bf", null ],
+    [ "generateJacobianMatrix", "classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd", null ],
     [ "generateStoichiometryMatrix", "classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f", null ],
     [ "getDepth", "classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9", null ],
-    [ "getJacobianMatrixEntry", "classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07", null ],
-    [ "getNetworkReactions", "classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037", null ],
+    [ "getJacobianMatrixEntry", "classgridfire_1_1_dynamic_engine.html#a88dbf350dc0ea3e2b64d825f489e0d60", null ],
+    [ "getNetworkReactions", "classgridfire_1_1_dynamic_engine.html#af496e04f7be9a0a51ac65dc95f901ffe", null ],
     [ "getScreeningModel", "classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0", null ],
-    [ "getSpeciesDestructionTimescales", "classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6", null ],
-    [ "getSpeciesIndex", "classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9", null ],
-    [ "getSpeciesTimescales", "classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813", null ],
-    [ "getStoichiometryMatrixEntry", "classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f", null ],
+    [ "getSpeciesDestructionTimescales", "classgridfire_1_1_dynamic_engine.html#a25c040d3078f6ff2ef38f733eb68f1fa", null ],
+    [ "getSpeciesIndex", "classgridfire_1_1_dynamic_engine.html#a8f66fb76c9f983ee93bf8b95cdc85596", null ],
+    [ "getSpeciesTimescales", "classgridfire_1_1_dynamic_engine.html#ae7114f5ebc6667b5e5971c0450ed03d9", null ],
+    [ "getStoichiometryMatrixEntry", "classgridfire_1_1_dynamic_engine.html#ad19c8451b6f624e2938f771cc067d5c1", null ],
     [ "isStale", "classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398", null ],
     [ "mapNetInToMolarAbundanceVector", "classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a", null ],
     [ "primeEngine", "classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e", null ],
     [ "rebuild", "classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf", null ],
-    [ "setNetworkReactions", "classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f", null ],
+    [ "setNetworkReactions", "classgridfire_1_1_dynamic_engine.html#a49025489901e22a20cdf99b455ff2ff0", null ],
     [ "setScreeningModel", "classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd", null ],
     [ "update", "classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1_engine-members.html b/docs/html/classgridfire_1_1_engine-members.html
index 690f47c5..8c7d9357 100644
--- a/docs/html/classgridfire_1_1_engine-members.html
+++ b/docs/html/classgridfire_1_1_engine-members.html
@@ -105,7 +105,7 @@ $(function(){initNavTree('classgridfire_1_1_engine.html',''); initResizable(true
 
 <p>This is the complete list of members for <a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a>, including all inherited members.</p>
 <table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb">calculateRHSAndEnergy</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740">calculateRHSAndEnergy</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3">getNetworkSpecies</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
 </table></div><!-- contents -->
diff --git a/docs/html/classgridfire_1_1_engine.html b/docs/html/classgridfire_1_1_engine.html
index 658ce06f..2c70f879 100644
--- a/docs/html/classgridfire_1_1_engine.html
+++ b/docs/html/classgridfire_1_1_engine.html
@@ -136,9 +136,9 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:a020e1b493d6964cafdad08fde697ceb3" id="r_a020e1b493d6964cafdad08fde697ceb3"><td class="memItemLeft" align="right" valign="top">virtual const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a020e1b493d6964cafdad08fde697ceb3">getNetworkSpecies</a> () const =0</td></tr>
 <tr class="memdesc:a020e1b493d6964cafdad08fde697ceb3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the list of species in the network.  <br /></td></tr>
 <tr class="separator:a020e1b493d6964cafdad08fde697ceb3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a89f714d19b84a93a004a7afbb487a6cb" id="r_a89f714d19b84a93a004a7afbb487a6cb"><td class="memItemLeft" align="right" valign="top">virtual std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a89f714d19b84a93a004a7afbb487a6cb">calculateRHSAndEnergy</a> (const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const =0</td></tr>
-<tr class="memdesc:a89f714d19b84a93a004a7afbb487a6cb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the right-hand side (dY/dt) and energy generation.  <br /></td></tr>
-<tr class="separator:a89f714d19b84a93a004a7afbb487a6cb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:add48d3af9ebde17717e42e220e349740" id="r_add48d3af9ebde17717e42e220e349740"><td class="memItemLeft" align="right" valign="top">virtual std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#add48d3af9ebde17717e42e220e349740">calculateRHSAndEnergy</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:add48d3af9ebde17717e42e220e349740"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the right-hand side (dY/dt) and energy generation.  <br /></td></tr>
+<tr class="separator:add48d3af9ebde17717e42e220e349740"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
 <div class="textblock"><p>Abstract base class for a reaction network engine. </p>
@@ -147,7 +147,7 @@ Public Member Functions</h2></td></tr>
 <p>Example: </p><div class="fragment"><div class="line"><span class="keyword">class </span>MyEngine : <span class="keyword">public</span> <a class="code hl_class" href="classgridfire_1_1_engine.html">gridfire::Engine</a> {</div>
 <div class="line">    <span class="comment">// Implement required methods...</span></div>
 <div class="line">};</div>
-<div class="ttc" id="aclassgridfire_1_1_engine_html"><div class="ttname"><a href="classgridfire_1_1_engine.html">gridfire::Engine</a></div><div class="ttdoc">Abstract base class for a reaction network engine.</div><div class="ttdef"><b>Definition</b> engine_abstract.h:84</div></div>
+<div class="ttc" id="aclassgridfire_1_1_engine_html"><div class="ttname"><a href="classgridfire_1_1_engine.html">gridfire::Engine</a></div><div class="ttdoc">Abstract base class for a reaction network engine.</div><div class="ttdef"><b>Definition</b> engine_abstract.h:96</div></div>
 </div><!-- fragment --> </div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
 <a id="a2e7970bed2100699f226f4141d5db037" name="a2e7970bed2100699f226f4141d5db037"></a>
 <h2 class="memtitle"><span class="permalink"><a href="#a2e7970bed2100699f226f4141d5db037">&#9670;&#160;</a></span>~Engine()</h2>
@@ -177,8 +177,8 @@ Public Member Functions</h2></td></tr>
 </div>
 </div>
 <h2 class="groupheader">Member Function Documentation</h2>
-<a id="a89f714d19b84a93a004a7afbb487a6cb" name="a89f714d19b84a93a004a7afbb487a6cb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a89f714d19b84a93a004a7afbb487a6cb">&#9670;&#160;</a></span>calculateRHSAndEnergy()</h2>
+<a id="add48d3af9ebde17717e42e220e349740" name="add48d3af9ebde17717e42e220e349740"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#add48d3af9ebde17717e42e220e349740">&#9670;&#160;</a></span>calculateRHSAndEnergy()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -189,7 +189,7 @@ Public Member Functions</h2></td></tr>
         <tr>
           <td class="memname">virtual std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt; gridfire::Engine::calculateRHSAndEnergy </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -212,7 +212,7 @@ Public Member Functions</h2></td></tr>
 <p>Calculate the right-hand side (dY/dt) and energy generation. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y</td><td>Vector of current abundances for all species. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -221,7 +221,7 @@ Public Member Functions</h2></td></tr>
 <dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1_step_derivatives.html" title="Structure holding derivatives and energy generation for a network step.">StepDerivatives&lt;double&gt;</a> containing dY/dt and energy generation rate.</dd></dl>
 <p>This function must be implemented by derived classes to compute the time derivatives of all species and the specific nuclear energy generation rate for the current state. </p>
 
-<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a">PyDynamicEngine</a>, and <a class="el" href="class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d">PyEngine</a>.</p>
+<p>Implemented in <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac5545d546166de94514871d7ad7b8669">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#af273b29d7700cdc34da6e2712fffc5c2">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a7acc98647427981a9602d251c9288012">gridfire::GraphEngine</a>, and <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a5c1ab19bc3394a5d29241ef02073c4cb">gridfire::MultiscalePartitioningEngineView</a>.</p>
 
 </div>
 </div>
diff --git a/docs/html/classgridfire_1_1_engine.js b/docs/html/classgridfire_1_1_engine.js
index f651ebcc..fc4da4d3 100644
--- a/docs/html/classgridfire_1_1_engine.js
+++ b/docs/html/classgridfire_1_1_engine.js
@@ -1,6 +1,6 @@
 var classgridfire_1_1_engine =
 [
     [ "~Engine", "classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037", null ],
-    [ "calculateRHSAndEnergy", "classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb", null ],
+    [ "calculateRHSAndEnergy", "classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740", null ],
     [ "getNetworkSpecies", "classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1_engine_view.html b/docs/html/classgridfire_1_1_engine_view.html
index 1db3383b..7770e2db 100644
--- a/docs/html/classgridfire_1_1_engine_view.html
+++ b/docs/html/classgridfire_1_1_engine_view.html
@@ -139,7 +139,7 @@ class gridfire::EngineView&lt; EngineT &gt;</div><p>Abstract base class for a "v
 <div class="line"><span class="keyword">private</span>:</div>
 <div class="line">    DynamicEngine&amp; engine_;</div>
 <div class="line">};</div>
-<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> engine_abstract.h:130</div></div>
+<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> engine_abstract.h:142</div></div>
 <div class="ttc" id="aclassgridfire_1_1_engine_view_html"><div class="ttname"><a href="classgridfire_1_1_engine_view.html">gridfire::EngineView</a></div><div class="ttdoc">Abstract base class for a &quot;view&quot; of a reaction network engine.</div><div class="ttdef"><b>Definition</b> engine_view_abstract.h:74</div></div>
 <div class="ttc" id="aclassgridfire_1_1_engine_view_html_ad294227f8b5cf6d970c349eabf5447a6"><div class="ttname"><a href="#ad294227f8b5cf6d970c349eabf5447a6">gridfire::EngineView::getBaseEngine</a></div><div class="ttdeci">virtual const EngineT &amp; getBaseEngine() const =0</div><div class="ttdoc">Access the underlying engine instance.</div></div>
 </div><!-- fragment --><dl class="section see"><dt>See also</dt><dd><a class="el" href="classgridfire_1_1_adaptive_engine_view.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">gridfire::AdaptiveEngineView</a> for a concrete example of dynamic culling. </dd></dl>
diff --git a/docs/html/classgridfire_1_1_file_defined_engine_view-members.html b/docs/html/classgridfire_1_1_file_defined_engine_view-members.html
index a745105b..2dd3c8b5 100644
--- a/docs/html/classgridfire_1_1_file_defined_engine_view-members.html
+++ b/docs/html/classgridfire_1_1_file_defined_engine_view-members.html
@@ -105,54 +105,55 @@ $(function(){initNavTree('classgridfire_1_1_file_defined_engine_view.html','');
 
 <p>This is the complete list of members for <a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a>, including all inherited members.</p>
 <table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d">calculateRHSAndEnergy</a>(const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e">collect</a>(const std::vector&lt; std::string &gt; &amp;peNames)</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187">Config</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68">constructReactionIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985">constructSpeciesIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92">DefinedEngineView</a>(const std::vector&lt; std::string &gt; &amp;peNames, DynamicEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd">FileDefinedEngineView</a>(DynamicEngine &amp;baseEngine, const std::string &amp;fileName, const io::NetworkFileParser &amp;parser)</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae">generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_dynamic, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7">gridfire::DynamicEngine::generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484">getBaseEngine</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b">getJacobianMatrixEntry</a>(const int i_defined, const int j_defined) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718">getNetworkFile</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f">getParser</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491">getSpeciesDestructionTimescales</a>(const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72">getSpeciesTimescales</a>(const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2">getStoichiometryMatrixEntry</a>(const int speciesIndex_defined, const int reactionIndex_defined) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87">isStale</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08">LogManager</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965">m_activeReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae">m_activeSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195">m_baseEngine</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362">m_config</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b">m_fileName</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382">m_isStale</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500">m_parser</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd">m_reactionIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e">m_speciesIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873">mapFullToView</a>(const std::vector&lt; double &gt; &amp;full) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843">mapViewToFull</a>(const std::vector&lt; double &gt; &amp;defined) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1">mapViewToFullReactionIndex</a>(size_t definedReactionIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a">mapViewToFullSpeciesIndex</a>(size_t definedSpeciesIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460">primeEngine</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf">rebuild</a>(const fourdst::composition::Composition &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d">setNetworkReactions</a>(const reaction::LogicalReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0">validateNetworkState</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html">gridfire::EngineView&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a06aca977aafb4784fd167acb8c02dda2">calculateEpsDerivatives</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a74298377d0432ae3d577be0e9e6052b3">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af273b29d7700cdc34da6e2712fffc5c2">calculateRHSAndEnergy</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e">collect</a>(const std::vector&lt; std::string &gt; &amp;peNames)</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187">Config</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68">constructReactionIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985">constructSpeciesIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92">DefinedEngineView</a>(const std::vector&lt; std::string &gt; &amp;peNames, DynamicEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd">FileDefinedEngineView</a>(DynamicEngine &amp;baseEngine, const std::string &amp;fileName, const io::NetworkFileParser &amp;parser)</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ab80eadd713a40e9263e5231737e956d0">generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd">gridfire::DynamicEngine::generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484">getBaseEngine</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#aa49532266ff959ac66f501336f102ce8">getJacobianMatrixEntry</a>(const fourdst::atomic::Species &amp;rowSpecies, const fourdst::atomic::Species &amp;colSpecies) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718">getNetworkFile</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a5f9db5a9287aa03b2fa4d516e9a576b6">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f">getParser</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a7bcf169ba1e12e3356d4bcc27c3fc554">getSpeciesDestructionTimescales</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af3b355ffcda6a8f2841184cc56e3761a">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a18f46d92ea7e04068ad9e7af4ed605a8">getSpeciesTimescales</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af1843cfd2a95bfa46ab40d4c4de11ef9">getStoichiometryMatrixEntry</a>(const fourdst::atomic::Species &amp;species, const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87">isStale</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08">LogManager</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a824fe65ae22fa856051f2652764a0bb6">m_activeReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae">m_activeSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195">m_baseEngine</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362">m_config</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b">m_fileName</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382">m_isStale</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500">m_parser</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd">m_reactionIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e">m_speciesIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873">mapFullToView</a>(const std::vector&lt; double &gt; &amp;full) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843">mapViewToFull</a>(const std::vector&lt; double &gt; &amp;defined) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1">mapViewToFullReactionIndex</a>(size_t definedReactionIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a">mapViewToFullSpeciesIndex</a>(size_t definedSpeciesIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460">primeEngine</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf">rebuild</a>(const fourdst::composition::Composition &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9">setNetworkReactions</a>(const reaction::ReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0">validateNetworkState</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html">gridfire::EngineView&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/classgridfire_1_1_file_defined_engine_view.html b/docs/html/classgridfire_1_1_file_defined_engine_view.html
index db6b5477..e36e25e2 100644
--- a/docs/html/classgridfire_1_1_file_defined_engine_view.html
+++ b/docs/html/classgridfire_1_1_file_defined_engine_view.html
@@ -140,34 +140,37 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:a1a55f9748c45af6f13e16a6b6ceaa211 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a1a55f9748c45af6f13e16a6b6ceaa211"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211">getNetworkSpecies</a> () const override</td></tr>
 <tr class="memdesc:a1a55f9748c45af6f13e16a6b6ceaa211 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the list of active species in the network defined by the file.  <br /></td></tr>
 <tr class="separator:a1a55f9748c45af6f13e16a6b6ceaa211 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4b0d71367cb1d4c06bcd01251bbeb60d inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a4b0d71367cb1d4c06bcd01251bbeb60d"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d">calculateRHSAndEnergy</a> (const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:a4b0d71367cb1d4c06bcd01251bbeb60d inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the right-hand side (dY/dt) and energy generation for the active species.  <br /></td></tr>
-<tr class="separator:a4b0d71367cb1d4c06bcd01251bbeb60d inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad25c722eaee1f28f8ed7b4d33a1f69ae inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_ad25c722eaee1f28f8ed7b4d33a1f69ae"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae">generateJacobianMatrix</a> (const std::vector&lt; double &gt; &amp;Y_dynamic, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:ad25c722eaee1f28f8ed7b4d33a1f69ae inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for the active species.  <br /></td></tr>
-<tr class="separator:ad25c722eaee1f28f8ed7b4d33a1f69ae inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a273b175049f5ce7b9208e931ad139e1b inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a273b175049f5ce7b9208e931ad139e1b"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b">getJacobianMatrixEntry</a> (const int i_defined, const int j_defined) const override</td></tr>
-<tr class="memdesc:a273b175049f5ce7b9208e931ad139e1b inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the Jacobian matrix for the active species.  <br /></td></tr>
-<tr class="separator:a273b175049f5ce7b9208e931ad139e1b inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af273b29d7700cdc34da6e2712fffc5c2 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_af273b29d7700cdc34da6e2712fffc5c2"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af273b29d7700cdc34da6e2712fffc5c2">calculateRHSAndEnergy</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:af273b29d7700cdc34da6e2712fffc5c2 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the right-hand side (dY/dt) and energy generation for the active species.  <br /></td></tr>
+<tr class="separator:af273b29d7700cdc34da6e2712fffc5c2 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a06aca977aafb4784fd167acb8c02dda2 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a06aca977aafb4784fd167acb8c02dda2"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a06aca977aafb4784fd167acb8c02dda2">calculateEpsDerivatives</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a06aca977aafb4784fd167acb8c02dda2 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the derivatives of the energy generation rate with respect to T and rho.  <br /></td></tr>
+<tr class="separator:a06aca977aafb4784fd167acb8c02dda2 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab80eadd713a40e9263e5231737e956d0 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_ab80eadd713a40e9263e5231737e956d0"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ab80eadd713a40e9263e5231737e956d0">generateJacobianMatrix</a> (const fourdst::composition::Composition &amp;comp, const double T9, const double rho) const override</td></tr>
+<tr class="memdesc:ab80eadd713a40e9263e5231737e956d0 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for the active species.  <br /></td></tr>
+<tr class="separator:ab80eadd713a40e9263e5231737e956d0 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa49532266ff959ac66f501336f102ce8 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_aa49532266ff959ac66f501336f102ce8"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#aa49532266ff959ac66f501336f102ce8">getJacobianMatrixEntry</a> (const fourdst::atomic::Species &amp;rowSpecies, const fourdst::atomic::Species &amp;colSpecies) const override</td></tr>
+<tr class="memdesc:aa49532266ff959ac66f501336f102ce8 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the Jacobian matrix for the active species.  <br /></td></tr>
+<tr class="separator:aa49532266ff959ac66f501336f102ce8 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:ad07221be49ae1b5133c5b987dafac3b6 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_ad07221be49ae1b5133c5b987dafac3b6"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6">generateStoichiometryMatrix</a> () override</td></tr>
 <tr class="memdesc:ad07221be49ae1b5133c5b987dafac3b6 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the stoichiometry matrix for the active reactions and species.  <br /></td></tr>
 <tr class="separator:ad07221be49ae1b5133c5b987dafac3b6 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afa2820971397114d788730cc33feefe2 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_afa2820971397114d788730cc33feefe2"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2">getStoichiometryMatrixEntry</a> (const int speciesIndex_defined, const int reactionIndex_defined) const override</td></tr>
-<tr class="memdesc:afa2820971397114d788730cc33feefe2 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the stoichiometry matrix for the active species and reactions.  <br /></td></tr>
-<tr class="separator:afa2820971397114d788730cc33feefe2 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a142725470f96cba3edb48a29f1264032 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a142725470f96cba3edb48a29f1264032"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:a142725470f96cba3edb48a29f1264032 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the molar reaction flow for a given reaction in the active network.  <br /></td></tr>
-<tr class="separator:a142725470f96cba3edb48a29f1264032 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae03b4f9afac03d4011a4d7cf0423535d inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_ae03b4f9afac03d4011a4d7cf0423535d"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d">getNetworkReactions</a> () const override</td></tr>
-<tr class="memdesc:ae03b4f9afac03d4011a4d7cf0423535d inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the set of active logical reactions in the network.  <br /></td></tr>
-<tr class="separator:ae03b4f9afac03d4011a4d7cf0423535d inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9736edfb7c9148b60de30d50c0d3530d inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a9736edfb7c9148b60de30d50c0d3530d"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d">setNetworkReactions</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;reactions) override</td></tr>
-<tr class="separator:a9736edfb7c9148b60de30d50c0d3530d inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac8daafabbc76f4b6811bede241a03d72 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_ac8daafabbc76f4b6811bede241a03d72"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72">getSpeciesTimescales</a> (const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:ac8daafabbc76f4b6811bede241a03d72 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes timescales for all active species in the network.  <br /></td></tr>
-<tr class="separator:ac8daafabbc76f4b6811bede241a03d72 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3d58e36ed8a6a0d82bb65e91090f7491 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a3d58e36ed8a6a0d82bb65e91090f7491"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491">getSpeciesDestructionTimescales</a> (const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td></tr>
-<tr class="separator:a3d58e36ed8a6a0d82bb65e91090f7491 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af1843cfd2a95bfa46ab40d4c4de11ef9 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_af1843cfd2a95bfa46ab40d4c4de11ef9"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af1843cfd2a95bfa46ab40d4c4de11ef9">getStoichiometryMatrixEntry</a> (const fourdst::atomic::Species &amp;species, const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction) const override</td></tr>
+<tr class="memdesc:af1843cfd2a95bfa46ab40d4c4de11ef9 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the stoichiometry matrix for the active species and reactions.  <br /></td></tr>
+<tr class="separator:af1843cfd2a95bfa46ab40d4c4de11ef9 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a74298377d0432ae3d577be0e9e6052b3 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a74298377d0432ae3d577be0e9e6052b3"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a74298377d0432ae3d577be0e9e6052b3">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a74298377d0432ae3d577be0e9e6052b3 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the molar reaction flow for a given reaction in the active network.  <br /></td></tr>
+<tr class="separator:a74298377d0432ae3d577be0e9e6052b3 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5f9db5a9287aa03b2fa4d516e9a576b6 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a5f9db5a9287aa03b2fa4d516e9a576b6"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a5f9db5a9287aa03b2fa4d516e9a576b6">getNetworkReactions</a> () const override</td></tr>
+<tr class="memdesc:a5f9db5a9287aa03b2fa4d516e9a576b6 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the set of active logical reactions in the network.  <br /></td></tr>
+<tr class="separator:a5f9db5a9287aa03b2fa4d516e9a576b6 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a655e74357cce822c4508069a3bcac2c9 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a655e74357cce822c4508069a3bcac2c9"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9">setNetworkReactions</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions) override</td></tr>
+<tr class="separator:a655e74357cce822c4508069a3bcac2c9 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a18f46d92ea7e04068ad9e7af4ed605a8 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a18f46d92ea7e04068ad9e7af4ed605a8"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a18f46d92ea7e04068ad9e7af4ed605a8">getSpeciesTimescales</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a18f46d92ea7e04068ad9e7af4ed605a8 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes timescales for all active species in the network.  <br /></td></tr>
+<tr class="separator:a18f46d92ea7e04068ad9e7af4ed605a8 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7bcf169ba1e12e3356d4bcc27c3fc554 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a7bcf169ba1e12e3356d4bcc27c3fc554"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a7bcf169ba1e12e3356d4bcc27c3fc554">getSpeciesDestructionTimescales</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="separator:a7bcf169ba1e12e3356d4bcc27c3fc554 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:ae5762f395caea5381ec177507816b5ae inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_ae5762f395caea5381ec177507816b5ae"><td class="memItemLeft" align="right" valign="top">fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae">update</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn) override</td></tr>
 <tr class="memdesc:ae5762f395caea5381ec177507816b5ae inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Updates the engine view if it is marked as stale.  <br /></td></tr>
 <tr class="separator:ae5762f395caea5381ec177507816b5ae inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -179,9 +182,9 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:a3c657b82a0117118a4bb0ce7f624ae0c inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a3c657b82a0117118a4bb0ce7f624ae0c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c">getScreeningModel</a> () const override</td></tr>
 <tr class="memdesc:a3c657b82a0117118a4bb0ce7f624ae0c inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the screening model from the base engine.  <br /></td></tr>
 <tr class="separator:a3c657b82a0117118a4bb0ce7f624ae0c inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abfee22688617ffe91c69be93049c89b3 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_abfee22688617ffe91c69be93049c89b3"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
-<tr class="memdesc:abfee22688617ffe91c69be93049c89b3 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the index of a species in the network.  <br /></td></tr>
-<tr class="separator:abfee22688617ffe91c69be93049c89b3 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af3b355ffcda6a8f2841184cc56e3761a inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_af3b355ffcda6a8f2841184cc56e3761a"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af3b355ffcda6a8f2841184cc56e3761a">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:af3b355ffcda6a8f2841184cc56e3761a inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the index of a species in the network.  <br /></td></tr>
+<tr class="separator:af3b355ffcda6a8f2841184cc56e3761a inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a72789c1c3379594b65b560da50192de2 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a72789c1c3379594b65b560da50192de2"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2">mapNetInToMolarAbundanceVector</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn) const override</td></tr>
 <tr class="memdesc:a72789c1c3379594b65b560da50192de2 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map a <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> object to a vector of molar abundances.  <br /></td></tr>
 <tr class="separator:a72789c1c3379594b65b560da50192de2 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -189,8 +192,8 @@ Public Member Functions</h2></td></tr>
 <tr class="memdesc:a13033abd3b44904f98b58c93e22da460 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prime the engine with initial conditions.  <br /></td></tr>
 <tr class="separator:a13033abd3b44904f98b58c93e22da460 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="inherit_header pub_methods_classgridfire_1_1_dynamic_engine"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1_dynamic_engine')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td></tr>
-<tr class="memitem:a818d942efa843959393e4eed3263b7e7 inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a818d942efa843959393e4eed3263b7e7"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7">generateJacobianMatrix</a> (const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const <a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">SparsityPattern</a> &amp;sparsityPattern) const</td></tr>
-<tr class="separator:a818d942efa843959393e4eed3263b7e7 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a11d602a708af4629f51873b17f7b8dbd inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a11d602a708af4629f51873b17f7b8dbd"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd">generateJacobianMatrix</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho, const <a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">SparsityPattern</a> &amp;sparsityPattern) const</td></tr>
+<tr class="separator:a11d602a708af4629f51873b17f7b8dbd inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a04317b66ef14d519264bc30ee69f5bf9 inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a04317b66ef14d519264bc30ee69f5bf9"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">getDepth</a> () const</td></tr>
 <tr class="memdesc:a04317b66ef14d519264bc30ee69f5bf9 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the depth of the network.  <br /></td></tr>
 <tr class="separator:a04317b66ef14d519264bc30ee69f5bf9 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -334,7 +337,7 @@ Additional Inherited Members</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -359,7 +362,7 @@ Additional Inherited Members</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
diff --git a/docs/html/classgridfire_1_1_graph_engine-members.html b/docs/html/classgridfire_1_1_graph_engine-members.html
index 0affd304..2d97c0f6 100644
--- a/docs/html/classgridfire_1_1_graph_engine-members.html
+++ b/docs/html/classgridfire_1_1_graph_engine-members.html
@@ -105,79 +105,82 @@ $(function(){initNavTree('classgridfire_1_1_graph_engine.html',''); initResizabl
 
 <p>This is the complete list of members for <a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a>, including all inherited members.</p>
 <table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#af41df9ce979b6410e12642cb093916c9">calculateAllDerivatives</a>(const std::vector&lt; T &gt; &amp;Y_in, T T9, T rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#aaf4d54e4b774ab8ec8eabec006579d31">calculateAllDerivatives</a>(const std::vector&lt; double &gt; &amp;Y_in, const double T9, const double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a71a3d1181b90c3becdc5d9a3da05b9c9">calculateAllDerivatives</a>(const std::vector&lt; ADDouble &gt; &amp;Y_in, const ADDouble &amp;T9, const ADDouble &amp;rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a97f98706b51fbe0d167ed81ffe58c438">calculateAllDerivativesUsingPrecomputation</a>(const std::vector&lt; double &gt; &amp;Y_in, const std::vector&lt; double &gt; &amp;bare_rates, const std::vector&lt; double &gt; &amp;bare_reverse_rates, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a5e96b5a0b34c8932f0e14eabda57f1a4">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const std::vector&lt; T &gt; &amp;Y, const T T9, const T rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a17774cd9ffcf1ba94019df766a0984a0">calculateReverseMolarReactionFlow</a>(T T9, T rho, std::vector&lt; T &gt; screeningFactors, std::vector&lt; T &gt; Y, size_t reactionIndex, const reaction::LogicalReaction &amp;reaction) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28">calculateReverseRate</a>(const reaction::Reaction &amp;reaction, double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755">calculateReverseRateTwoBody</a>(const reaction::Reaction &amp;reaction, const double T9, const double forwardRate, const double expFactor) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7">calculateReverseRateTwoBodyDerivative</a>(const reaction::Reaction &amp;reaction, const double T9, const double reverseRate) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081">calculateRHSAndEnergy</a>(const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746">collectAtomicReverseRateAtomicBases</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa">collectNetworkSpecies</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95">exportToCSV</a>(const std::string &amp;filename) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929">exportToDot</a>(const std::string &amp;filename) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119">generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_dynamic, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a9687eef88c97eeb7f8680acb230f8ac1">generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4">getDepth</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c">getJacobianMatrixEntry</a>(const int i, const int j) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9">getNetReactionStoichiometry</a>(const reaction::Reaction &amp;reaction)</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44">getPartitionFunction</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#aef8f6bde24d27345067b71084330c7da">getSpeciesDestructionTimescales</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a914f6abc61805cddaebcb8f3cf470dda">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581">getSpeciesTimescales</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152">getStoichiometryMatrixEntry</a>(const int speciesIndex, const int reactionIndex) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#afad967546b611d9c005268760feb75d5">GraphEngine</a>(const fourdst::composition::Composition &amp;composition, const BuildDepthType=NetworkBuildDepth::Full)</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a39d9838ed40bea71ee6c552bb5969026">GraphEngine</a>(const fourdst::composition::Composition &amp;composition, const partition::PartitionFunction &amp;partitionFunction, const BuildDepthType buildDepth=NetworkBuildDepth::Full)</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a1e7e851dfa21d41c2dc533ba56fc4c7b">GraphEngine</a>(const reaction::LogicalReactionSet &amp;reactions)</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b">involvesSpecies</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f">isPrecomputationEnabled</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5">isStale</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0">isUsingReverseReactions</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6">m_atomicReverseRates</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18">m_config</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e">m_constants</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01">m_depth</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a8873331f5ae40a3f640dedbbed685ed9">calculateAllDerivatives</a>(const std::vector&lt; T &gt; &amp;Y_in, T T9, T rho, T Ye, T mue) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#aef12443d7980301d8bb89f4ba4890450">calculateAllDerivativesUsingPrecomputation</a>(const fourdst::composition::Composition &amp;comp, const std::vector&lt; double &gt; &amp;bare_rates, const std::vector&lt; double &gt; &amp;bare_reverse_rates, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#ae0c9159cc3467fd85d1a5895f1786c47">calculateEpsDerivatives</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a1675859971f0bd2db0650f8da54ed7eb">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a2bea809d2efb3a5e7cc065ec80baebce">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const std::vector&lt; T &gt; &amp;Y, const T T9, const T rho, T Ye, T mue) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a972d0705351167dc889a2f6c442e7a93">calculateReverseMolarReactionFlow</a>(const T T9, const T rho, std::vector&lt; T &gt; screeningFactors, const std::vector&lt; T &gt; &amp;Y, size_t reactionIndex, const reaction::Reaction &amp;reaction) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#accf01734524a706ad03c9b9898af54b3">calculateReverseRate</a>(const reaction::Reaction &amp;reaction, double T9, double rho, const fourdst::composition::Composition &amp;comp) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755">calculateReverseRateTwoBody</a>(const reaction::Reaction &amp;reaction, const double T9, const double forwardRate, const double expFactor) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a9340db538a507b96e186b60ba0450205">calculateReverseRateTwoBodyDerivative</a>(const reaction::Reaction &amp;reaction, double T9, double rho, const fourdst::composition::Composition &amp;comp, double reverseRate) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a7acc98647427981a9602d251c9288012">calculateRHSAndEnergy</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746">collectAtomicReverseRateAtomicBases</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa">collectNetworkSpecies</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95">exportToCSV</a>(const std::string &amp;filename) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929">exportToDot</a>(const std::string &amp;filename) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#ae11f6267077025ca342e2e263ad87e5e">generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a4e0bbc6448999e2ef06879270b7d3dec">generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4">getDepth</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a8ab5308629b8707922e5954776254aa6">getJacobianMatrixEntry</a>(const fourdst::atomic::Species &amp;rowSpecies, const fourdst::atomic::Species &amp;colSpecies) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9">getNetReactionStoichiometry</a>(const reaction::Reaction &amp;reaction)</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a3b7f3ba85821165f58f168bc68f86b2d">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44">getPartitionFunction</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a47df5a9c448dd1ce8654df819a6cc8ff">getSpeciesDestructionTimescales</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a9e426e6c178dd80bd58090489d3b2be9">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a7dde968244f3c4934c7738445c709232">getSpeciesTimescales</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#ad90a2d770ebf098f0d6d5f5339961e95">getStoichiometryMatrixEntry</a>(const fourdst::atomic::Species &amp;species, const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a38aaafb1d9a6548bc8e8cb672417bbbe">GraphEngine</a>(const fourdst::composition::Composition &amp;composition, BuildDepthType=NetworkBuildDepth::Full)</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a3a03fbd767f495ca667f23789b07c293">GraphEngine</a>(const fourdst::composition::Composition &amp;composition, const partition::PartitionFunction &amp;partitionFunction, BuildDepthType buildDepth=NetworkBuildDepth::Full)</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a514cc6b5482d6a27902975da17b5e39e">GraphEngine</a>(const reaction::ReactionSet &amp;reactions)</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b">involvesSpecies</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f">isPrecomputationEnabled</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5">isStale</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0">isUsingReverseReactions</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6">m_atomicReverseRates</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18">m_config</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e">m_constants</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01">m_depth</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a1d5f6a3f217af7f4d0f95bdf7916b774">m_epsADFun</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06">m_full_jacobian_sparsity_pattern</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891">m_jac_work</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910">m_jacobianMatrix</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc">m_networkSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827">m_networkSpeciesMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e">m_partitionFunction</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3">m_precomputedReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3">m_reactionIDMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#acb7c4f5108b0efeae48ad15598e808c3">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876">m_rhsADFun</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210">m_screeningModel</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80">m_screeningType</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7">m_speciesToIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24">m_stoichiometryMatrix</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de">m_usePrecomputation</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc">m_useReverseReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a8ff064c9996772281984f88ee492d04a">m_indexToSpeciesMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891">m_jac_work</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910">m_jacobianMatrix</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc">m_networkSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827">m_networkSpeciesMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e">m_partitionFunction</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3">m_precomputedReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3">m_reactionIDMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#ad3b97595871d1f62ee7f4726b601ebef">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876">m_rhsADFun</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210">m_screeningModel</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80">m_screeningType</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7">m_speciesToIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24">m_stoichiometryMatrix</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de">m_usePrecomputation</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc">m_useReverseReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a9ac5893030802b0b846552949e866340">m_weakRateInterpolator</a></td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567">populateReactionIDMap</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391">populateSpeciesToIndexMap</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd">precomputeNetwork</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e">primeEngine</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490">rebuild</a>(const fourdst::composition::Composition &amp;comp, const BuildDepthType depth) override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889">recordADTape</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5">reserveJacobianMatrix</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0">setNetworkReactions</a>(const reaction::LogicalReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1">setPrecomputation</a>(bool precompute)</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197">setUseReverseReactions</a>(bool useReverse)</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f">syncInternalMaps</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be">validateConservation</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#ab29ef3225c8fcda012b10765df064b63">recordADTape</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a16b8cd1b0e19b4d4519596a4e22eaf5c">recordEpsADTape</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5">reserveJacobianMatrix</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a52288e2629609c8438a3c9bc3f910016">setNetworkReactions</a>(const reaction::ReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1">setPrecomputation</a>(bool precompute)</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197">setUseReverseReactions</a>(bool useReverse)</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f">syncInternalMaps</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be">validateConservation</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/classgridfire_1_1_graph_engine.html b/docs/html/classgridfire_1_1_graph_engine.html
index 51f388db..4246ad9d 100644
--- a/docs/html/classgridfire_1_1_graph_engine.html
+++ b/docs/html/classgridfire_1_1_graph_engine.html
@@ -136,47 +136,50 @@ Classes</h2></td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
 Public Member Functions</h2></td></tr>
-<tr class="memitem:afad967546b611d9c005268760feb75d5" id="r_afad967546b611d9c005268760feb75d5"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afad967546b611d9c005268760feb75d5">GraphEngine</a> (const fourdst::composition::Composition &amp;composition, const <a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a>=<a class="el" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a>)</td></tr>
-<tr class="memdesc:afad967546b611d9c005268760feb75d5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1_graph_engine.html" title="A reaction network engine that uses a graph-based representation.">GraphEngine</a> from a composition.  <br /></td></tr>
-<tr class="separator:afad967546b611d9c005268760feb75d5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a39d9838ed40bea71ee6c552bb5969026" id="r_a39d9838ed40bea71ee6c552bb5969026"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a39d9838ed40bea71ee6c552bb5969026">GraphEngine</a> (const fourdst::composition::Composition &amp;composition, const <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html">partition::PartitionFunction</a> &amp;partitionFunction, const <a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a> buildDepth=<a class="el" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a>)</td></tr>
-<tr class="separator:a39d9838ed40bea71ee6c552bb5969026"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1e7e851dfa21d41c2dc533ba56fc4c7b" id="r_a1e7e851dfa21d41c2dc533ba56fc4c7b"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1e7e851dfa21d41c2dc533ba56fc4c7b">GraphEngine</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;reactions)</td></tr>
-<tr class="memdesc:a1e7e851dfa21d41c2dc533ba56fc4c7b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1_graph_engine.html" title="A reaction network engine that uses a graph-based representation.">GraphEngine</a> from a set of reactions.  <br /></td></tr>
-<tr class="separator:a1e7e851dfa21d41c2dc533ba56fc4c7b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaed3743a52246b0f7bf03995e1c12081" id="r_aaed3743a52246b0f7bf03995e1c12081"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aaed3743a52246b0f7bf03995e1c12081">calculateRHSAndEnergy</a> (const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:aaed3743a52246b0f7bf03995e1c12081"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the right-hand side (dY/dt) and energy generation rate.  <br /></td></tr>
-<tr class="separator:aaed3743a52246b0f7bf03995e1c12081"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad049a295e2bb0f3e97b76d5742875119" id="r_ad049a295e2bb0f3e97b76d5742875119"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad049a295e2bb0f3e97b76d5742875119">generateJacobianMatrix</a> (const std::vector&lt; double &gt; &amp;Y_dynamic, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:ad049a295e2bb0f3e97b76d5742875119"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for the current state.  <br /></td></tr>
-<tr class="separator:ad049a295e2bb0f3e97b76d5742875119"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9687eef88c97eeb7f8680acb230f8ac1" id="r_a9687eef88c97eeb7f8680acb230f8ac1"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9687eef88c97eeb7f8680acb230f8ac1">generateJacobianMatrix</a> (const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const <a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">SparsityPattern</a> &amp;sparsityPattern) const override</td></tr>
-<tr class="separator:a9687eef88c97eeb7f8680acb230f8ac1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a38aaafb1d9a6548bc8e8cb672417bbbe" id="r_a38aaafb1d9a6548bc8e8cb672417bbbe"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a38aaafb1d9a6548bc8e8cb672417bbbe">GraphEngine</a> (const fourdst::composition::Composition &amp;composition, <a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a>=<a class="el" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a>)</td></tr>
+<tr class="memdesc:a38aaafb1d9a6548bc8e8cb672417bbbe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1_graph_engine.html" title="A reaction network engine that uses a graph-based representation.">GraphEngine</a> from a composition.  <br /></td></tr>
+<tr class="separator:a38aaafb1d9a6548bc8e8cb672417bbbe"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3a03fbd767f495ca667f23789b07c293" id="r_a3a03fbd767f495ca667f23789b07c293"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3a03fbd767f495ca667f23789b07c293">GraphEngine</a> (const fourdst::composition::Composition &amp;composition, const <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html">partition::PartitionFunction</a> &amp;partitionFunction, <a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a> buildDepth=<a class="el" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a>)</td></tr>
+<tr class="separator:a3a03fbd767f495ca667f23789b07c293"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a514cc6b5482d6a27902975da17b5e39e" id="r_a514cc6b5482d6a27902975da17b5e39e"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a514cc6b5482d6a27902975da17b5e39e">GraphEngine</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions)</td></tr>
+<tr class="memdesc:a514cc6b5482d6a27902975da17b5e39e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1_graph_engine.html" title="A reaction network engine that uses a graph-based representation.">GraphEngine</a> from a set of reactions.  <br /></td></tr>
+<tr class="separator:a514cc6b5482d6a27902975da17b5e39e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7acc98647427981a9602d251c9288012" id="r_a7acc98647427981a9602d251c9288012"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7acc98647427981a9602d251c9288012">calculateRHSAndEnergy</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a7acc98647427981a9602d251c9288012"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the right-hand side (dY/dt) and energy generation rate.  <br /></td></tr>
+<tr class="separator:a7acc98647427981a9602d251c9288012"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae0c9159cc3467fd85d1a5895f1786c47" id="r_ae0c9159cc3467fd85d1a5895f1786c47"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae0c9159cc3467fd85d1a5895f1786c47">calculateEpsDerivatives</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:ae0c9159cc3467fd85d1a5895f1786c47"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the derivatives of the energy generation rate with respect to T and rho.  <br /></td></tr>
+<tr class="separator:ae0c9159cc3467fd85d1a5895f1786c47"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae11f6267077025ca342e2e263ad87e5e" id="r_ae11f6267077025ca342e2e263ad87e5e"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae11f6267077025ca342e2e263ad87e5e">generateJacobianMatrix</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:ae11f6267077025ca342e2e263ad87e5e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for the current state.  <br /></td></tr>
+<tr class="separator:ae11f6267077025ca342e2e263ad87e5e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4e0bbc6448999e2ef06879270b7d3dec" id="r_a4e0bbc6448999e2ef06879270b7d3dec"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4e0bbc6448999e2ef06879270b7d3dec">generateJacobianMatrix</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho, const <a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">SparsityPattern</a> &amp;sparsityPattern) const override</td></tr>
+<tr class="separator:a4e0bbc6448999e2ef06879270b7d3dec"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:aed726d36ee2b3796beff6067a1e4db38" id="r_aed726d36ee2b3796beff6067a1e4db38"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aed726d36ee2b3796beff6067a1e4db38">generateStoichiometryMatrix</a> () override</td></tr>
 <tr class="memdesc:aed726d36ee2b3796beff6067a1e4db38"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the stoichiometry matrix for the network.  <br /></td></tr>
 <tr class="separator:aed726d36ee2b3796beff6067a1e4db38"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9245642b741f215e52861d00e756fb3f" id="r_a9245642b741f215e52861d00e756fb3f"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9245642b741f215e52861d00e756fb3f">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:a9245642b741f215e52861d00e756fb3f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the molar reaction flow for a given reaction.  <br /></td></tr>
-<tr class="separator:a9245642b741f215e52861d00e756fb3f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1675859971f0bd2db0650f8da54ed7eb" id="r_a1675859971f0bd2db0650f8da54ed7eb"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1675859971f0bd2db0650f8da54ed7eb">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a1675859971f0bd2db0650f8da54ed7eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the molar reaction flow for a given reaction.  <br /></td></tr>
+<tr class="separator:a1675859971f0bd2db0650f8da54ed7eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a0ed390f3e598ebba4e245ac90bb78767" id="r_a0ed390f3e598ebba4e245ac90bb78767"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0ed390f3e598ebba4e245ac90bb78767">getNetworkSpecies</a> () const override</td></tr>
 <tr class="memdesc:a0ed390f3e598ebba4e245ac90bb78767"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the list of species in the network.  <br /></td></tr>
 <tr class="separator:a0ed390f3e598ebba4e245ac90bb78767"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad45650d10fc5dff1673ae3f806d067da" id="r_ad45650d10fc5dff1673ae3f806d067da"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad45650d10fc5dff1673ae3f806d067da">getNetworkReactions</a> () const override</td></tr>
-<tr class="memdesc:ad45650d10fc5dff1673ae3f806d067da"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the set of logical reactions in the network.  <br /></td></tr>
-<tr class="separator:ad45650d10fc5dff1673ae3f806d067da"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a371ba0881d6903ddb2d586faa61805d0" id="r_a371ba0881d6903ddb2d586faa61805d0"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a371ba0881d6903ddb2d586faa61805d0">setNetworkReactions</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;reactions) override</td></tr>
-<tr class="separator:a371ba0881d6903ddb2d586faa61805d0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a303e6093591cde91430f866a04a8be7c" id="r_a303e6093591cde91430f866a04a8be7c"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a303e6093591cde91430f866a04a8be7c">getJacobianMatrixEntry</a> (const int i, const int j) const override</td></tr>
-<tr class="memdesc:a303e6093591cde91430f866a04a8be7c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the previously generated Jacobian matrix.  <br /></td></tr>
-<tr class="separator:a303e6093591cde91430f866a04a8be7c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6b5feaf788bade212b7c8df7ac8c8152" id="r_a6b5feaf788bade212b7c8df7ac8c8152"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6b5feaf788bade212b7c8df7ac8c8152">getStoichiometryMatrixEntry</a> (const int speciesIndex, const int reactionIndex) const override</td></tr>
-<tr class="memdesc:a6b5feaf788bade212b7c8df7ac8c8152"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the stoichiometry matrix.  <br /></td></tr>
-<tr class="separator:a6b5feaf788bade212b7c8df7ac8c8152"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a65f9f33cddb0bbd1da7c9d0cff23d581" id="r_a65f9f33cddb0bbd1da7c9d0cff23d581"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a65f9f33cddb0bbd1da7c9d0cff23d581">getSpeciesTimescales</a> (const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
-<tr class="memdesc:a65f9f33cddb0bbd1da7c9d0cff23d581"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes timescales for all species in the network.  <br /></td></tr>
-<tr class="separator:a65f9f33cddb0bbd1da7c9d0cff23d581"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aef8f6bde24d27345067b71084330c7da" id="r_aef8f6bde24d27345067b71084330c7da"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aef8f6bde24d27345067b71084330c7da">getSpeciesDestructionTimescales</a> (const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
-<tr class="separator:aef8f6bde24d27345067b71084330c7da"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3b7f3ba85821165f58f168bc68f86b2d" id="r_a3b7f3ba85821165f58f168bc68f86b2d"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3b7f3ba85821165f58f168bc68f86b2d">getNetworkReactions</a> () const override</td></tr>
+<tr class="memdesc:a3b7f3ba85821165f58f168bc68f86b2d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the set of logical reactions in the network.  <br /></td></tr>
+<tr class="separator:a3b7f3ba85821165f58f168bc68f86b2d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a52288e2629609c8438a3c9bc3f910016" id="r_a52288e2629609c8438a3c9bc3f910016"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a52288e2629609c8438a3c9bc3f910016">setNetworkReactions</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions) override</td></tr>
+<tr class="separator:a52288e2629609c8438a3c9bc3f910016"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8ab5308629b8707922e5954776254aa6" id="r_a8ab5308629b8707922e5954776254aa6"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8ab5308629b8707922e5954776254aa6">getJacobianMatrixEntry</a> (const fourdst::atomic::Species &amp;rowSpecies, const fourdst::atomic::Species &amp;colSpecies) const override</td></tr>
+<tr class="memdesc:a8ab5308629b8707922e5954776254aa6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the previously generated Jacobian matrix.  <br /></td></tr>
+<tr class="separator:a8ab5308629b8707922e5954776254aa6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad90a2d770ebf098f0d6d5f5339961e95" id="r_ad90a2d770ebf098f0d6d5f5339961e95"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad90a2d770ebf098f0d6d5f5339961e95">getStoichiometryMatrixEntry</a> (const fourdst::atomic::Species &amp;species, const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction) const override</td></tr>
+<tr class="memdesc:ad90a2d770ebf098f0d6d5f5339961e95"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the stoichiometry matrix.  <br /></td></tr>
+<tr class="separator:ad90a2d770ebf098f0d6d5f5339961e95"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7dde968244f3c4934c7738445c709232" id="r_a7dde968244f3c4934c7738445c709232"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7dde968244f3c4934c7738445c709232">getSpeciesTimescales</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a7dde968244f3c4934c7738445c709232"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes timescales for all species in the network.  <br /></td></tr>
+<tr class="separator:a7dde968244f3c4934c7738445c709232"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a47df5a9c448dd1ce8654df819a6cc8ff" id="r_a47df5a9c448dd1ce8654df819a6cc8ff"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a47df5a9c448dd1ce8654df819a6cc8ff">getSpeciesDestructionTimescales</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="separator:a47df5a9c448dd1ce8654df819a6cc8ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a5ac7cff23e70bd07ba7e510b753e2ab6" id="r_a5ac7cff23e70bd07ba7e510b753e2ab6"><td class="memItemLeft" align="right" valign="top">fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5ac7cff23e70bd07ba7e510b753e2ab6">update</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn) override</td></tr>
 <tr class="memdesc:a5ac7cff23e70bd07ba7e510b753e2ab6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update the internal state of the engine.  <br /></td></tr>
 <tr class="separator:a5ac7cff23e70bd07ba7e510b753e2ab6"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -206,23 +209,23 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:add98ece49ec5c538bddf3cc77004fe44" id="r_add98ece49ec5c538bddf3cc77004fe44"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html">partition::PartitionFunction</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#add98ece49ec5c538bddf3cc77004fe44">getPartitionFunction</a> () const</td></tr>
 <tr class="memdesc:add98ece49ec5c538bddf3cc77004fe44"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the partition function used for reaction rate calculations.  <br /></td></tr>
 <tr class="separator:add98ece49ec5c538bddf3cc77004fe44"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0b7b85f824e1021ae6e56b644db53b28" id="r_a0b7b85f824e1021ae6e56b644db53b28"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0b7b85f824e1021ae6e56b644db53b28">calculateReverseRate</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, double T9) const</td></tr>
-<tr class="memdesc:a0b7b85f824e1021ae6e56b644db53b28"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the reverse rate for a given reaction.  <br /></td></tr>
-<tr class="separator:a0b7b85f824e1021ae6e56b644db53b28"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:accf01734524a706ad03c9b9898af54b3" id="r_accf01734524a706ad03c9b9898af54b3"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#accf01734524a706ad03c9b9898af54b3">calculateReverseRate</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, double T9, double rho, const fourdst::composition::Composition &amp;comp) const</td></tr>
+<tr class="memdesc:accf01734524a706ad03c9b9898af54b3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the reverse rate for a given reaction.  <br /></td></tr>
+<tr class="separator:accf01734524a706ad03c9b9898af54b3"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a01fc9fd5d576b66d07360d05e821c755" id="r_a01fc9fd5d576b66d07360d05e821c755"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a01fc9fd5d576b66d07360d05e821c755">calculateReverseRateTwoBody</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const double T9, const double forwardRate, const double expFactor) const</td></tr>
 <tr class="memdesc:a01fc9fd5d576b66d07360d05e821c755"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the reverse rate for a two-body reaction.  <br /></td></tr>
 <tr class="separator:a01fc9fd5d576b66d07360d05e821c755"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af28950c5af3a92eb03a1a64ed0f913e7" id="r_af28950c5af3a92eb03a1a64ed0f913e7"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af28950c5af3a92eb03a1a64ed0f913e7">calculateReverseRateTwoBodyDerivative</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const double T9, const double reverseRate) const</td></tr>
-<tr class="separator:af28950c5af3a92eb03a1a64ed0f913e7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9340db538a507b96e186b60ba0450205" id="r_a9340db538a507b96e186b60ba0450205"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9340db538a507b96e186b60ba0450205">calculateReverseRateTwoBodyDerivative</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, double T9, double rho, const fourdst::composition::Composition &amp;comp, double reverseRate) const</td></tr>
+<tr class="separator:a9340db538a507b96e186b60ba0450205"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:ae7a210d9ab13ad5fb0c612f027acabd0" id="r_ae7a210d9ab13ad5fb0c612f027acabd0"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae7a210d9ab13ad5fb0c612f027acabd0">isUsingReverseReactions</a> () const</td></tr>
 <tr class="memdesc:ae7a210d9ab13ad5fb0c612f027acabd0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if reverse reactions are enabled.  <br /></td></tr>
 <tr class="separator:ae7a210d9ab13ad5fb0c612f027acabd0"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a409991d527ea4d4b05d1af907fe5d197" id="r_a409991d527ea4d4b05d1af907fe5d197"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a409991d527ea4d4b05d1af907fe5d197">setUseReverseReactions</a> (bool useReverse)</td></tr>
 <tr class="memdesc:a409991d527ea4d4b05d1af907fe5d197"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets whether to use reverse reactions in the engine.  <br /></td></tr>
 <tr class="separator:a409991d527ea4d4b05d1af907fe5d197"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a914f6abc61805cddaebcb8f3cf470dda" id="r_a914f6abc61805cddaebcb8f3cf470dda"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a914f6abc61805cddaebcb8f3cf470dda">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
-<tr class="memdesc:a914f6abc61805cddaebcb8f3cf470dda"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the index of a species in the network.  <br /></td></tr>
-<tr class="separator:a914f6abc61805cddaebcb8f3cf470dda"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9e426e6c178dd80bd58090489d3b2be9" id="r_a9e426e6c178dd80bd58090489d3b2be9"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9e426e6c178dd80bd58090489d3b2be9">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a9e426e6c178dd80bd58090489d3b2be9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the index of a species in the network.  <br /></td></tr>
+<tr class="separator:a9e426e6c178dd80bd58090489d3b2be9"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a27f3a928e1f6bbe7e847cffed6db729f" id="r_a27f3a928e1f6bbe7e847cffed6db729f"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a27f3a928e1f6bbe7e847cffed6db729f">mapNetInToMolarAbundanceVector</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn) const override</td></tr>
 <tr class="memdesc:a27f3a928e1f6bbe7e847cffed6db729f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps the <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> object to a vector of molar abundances.  <br /></td></tr>
 <tr class="separator:a27f3a928e1f6bbe7e847cffed6db729f"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -263,9 +266,11 @@ Private Member Functions</h2></td></tr>
 <tr class="memitem:a8d0c0bd54a2908cff62dae7af0c149b5" id="r_a8d0c0bd54a2908cff62dae7af0c149b5"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8d0c0bd54a2908cff62dae7af0c149b5">reserveJacobianMatrix</a> () const</td></tr>
 <tr class="memdesc:a8d0c0bd54a2908cff62dae7af0c149b5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reserves space for the Jacobian matrix.  <br /></td></tr>
 <tr class="separator:a8d0c0bd54a2908cff62dae7af0c149b5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a95563f6bc86007d9ee053a0f1e15b889" id="r_a95563f6bc86007d9ee053a0f1e15b889"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a95563f6bc86007d9ee053a0f1e15b889">recordADTape</a> ()</td></tr>
-<tr class="memdesc:a95563f6bc86007d9ee053a0f1e15b889"><td class="mdescLeft">&#160;</td><td class="mdescRight">Records the AD tape for the right-hand side of the ODE.  <br /></td></tr>
-<tr class="separator:a95563f6bc86007d9ee053a0f1e15b889"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab29ef3225c8fcda012b10765df064b63" id="r_ab29ef3225c8fcda012b10765df064b63"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab29ef3225c8fcda012b10765df064b63">recordADTape</a> () const</td></tr>
+<tr class="memdesc:ab29ef3225c8fcda012b10765df064b63"><td class="mdescLeft">&#160;</td><td class="mdescRight">Records the AD tape for the right-hand side of the ODE.  <br /></td></tr>
+<tr class="separator:ab29ef3225c8fcda012b10765df064b63"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a16b8cd1b0e19b4d4519596a4e22eaf5c" id="r_a16b8cd1b0e19b4d4519596a4e22eaf5c"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a16b8cd1b0e19b4d4519596a4e22eaf5c">recordEpsADTape</a> () const</td></tr>
+<tr class="separator:a16b8cd1b0e19b4d4519596a4e22eaf5c"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a29b338630c959449c15881935ac30746" id="r_a29b338630c959449c15881935ac30746"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a29b338630c959449c15881935ac30746">collectAtomicReverseRateAtomicBases</a> ()</td></tr>
 <tr class="separator:a29b338630c959449c15881935ac30746"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a92644bc333bff69c5685be4552ca12fd" id="r_a92644bc333bff69c5685be4552ca12fd"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a92644bc333bff69c5685be4552ca12fd">precomputeNetwork</a> ()</td></tr>
@@ -273,25 +278,19 @@ Private Member Functions</h2></td></tr>
 <tr class="memitem:acf4cfccea20f5cb31c9886bf233a28be" id="r_acf4cfccea20f5cb31c9886bf233a28be"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#acf4cfccea20f5cb31c9886bf233a28be">validateConservation</a> () const</td></tr>
 <tr class="memdesc:acf4cfccea20f5cb31c9886bf233a28be"><td class="mdescLeft">&#160;</td><td class="mdescRight">Validates mass and charge conservation across all reactions.  <br /></td></tr>
 <tr class="separator:acf4cfccea20f5cb31c9886bf233a28be"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a97f98706b51fbe0d167ed81ffe58c438" id="r_a97f98706b51fbe0d167ed81ffe58c438"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a97f98706b51fbe0d167ed81ffe58c438">calculateAllDerivativesUsingPrecomputation</a> (const std::vector&lt; double &gt; &amp;Y_in, const std::vector&lt; double &gt; &amp;bare_rates, const std::vector&lt; double &gt; &amp;bare_reverse_rates, double T9, double rho) const</td></tr>
-<tr class="separator:a97f98706b51fbe0d167ed81ffe58c438"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5e96b5a0b34c8932f0e14eabda57f1a4" id="r_a5e96b5a0b34c8932f0e14eabda57f1a4"><td class="memTemplParams" colspan="2">template&lt;IsArithmeticOrAD T&gt; </td></tr>
-<tr class="memitem:a5e96b5a0b34c8932f0e14eabda57f1a4"><td class="memTemplItemLeft" align="right" valign="top">T&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#a5e96b5a0b34c8932f0e14eabda57f1a4">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const std::vector&lt; T &gt; &amp;Y, const T T9, const T rho) const</td></tr>
-<tr class="memdesc:a5e96b5a0b34c8932f0e14eabda57f1a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the molar reaction flow for a given reaction.  <br /></td></tr>
-<tr class="separator:a5e96b5a0b34c8932f0e14eabda57f1a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a17774cd9ffcf1ba94019df766a0984a0" id="r_a17774cd9ffcf1ba94019df766a0984a0"><td class="memTemplParams" colspan="2">template&lt;IsArithmeticOrAD T&gt; </td></tr>
-<tr class="memitem:a17774cd9ffcf1ba94019df766a0984a0"><td class="memTemplItemLeft" align="right" valign="top">T&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#a17774cd9ffcf1ba94019df766a0984a0">calculateReverseMolarReactionFlow</a> (T T9, T rho, std::vector&lt; T &gt; screeningFactors, std::vector&lt; T &gt; Y, size_t reactionIndex, const <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html">reaction::LogicalReaction</a> &amp;reaction) const</td></tr>
-<tr class="separator:a17774cd9ffcf1ba94019df766a0984a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af41df9ce979b6410e12642cb093916c9" id="r_af41df9ce979b6410e12642cb093916c9"><td class="memTemplParams" colspan="2">template&lt;IsArithmeticOrAD T&gt; </td></tr>
-<tr class="memitem:af41df9ce979b6410e12642cb093916c9"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; T &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#af41df9ce979b6410e12642cb093916c9">calculateAllDerivatives</a> (const std::vector&lt; T &gt; &amp;Y_in, T T9, T rho) const</td></tr>
-<tr class="memdesc:af41df9ce979b6410e12642cb093916c9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates all derivatives (dY/dt) and the energy generation rate.  <br /></td></tr>
-<tr class="separator:af41df9ce979b6410e12642cb093916c9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaf4d54e4b774ab8ec8eabec006579d31" id="r_aaf4d54e4b774ab8ec8eabec006579d31"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aaf4d54e4b774ab8ec8eabec006579d31">calculateAllDerivatives</a> (const std::vector&lt; double &gt; &amp;Y_in, const double T9, const double rho) const</td></tr>
-<tr class="memdesc:aaf4d54e4b774ab8ec8eabec006579d31"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates all derivatives (dY/dt) and the energy generation rate (double precision).  <br /></td></tr>
-<tr class="separator:aaf4d54e4b774ab8ec8eabec006579d31"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a71a3d1181b90c3becdc5d9a3da05b9c9" id="r_a71a3d1181b90c3becdc5d9a3da05b9c9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; <a class="el" href="namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc">ADDouble</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a71a3d1181b90c3becdc5d9a3da05b9c9">calculateAllDerivatives</a> (const std::vector&lt; <a class="el" href="namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc">ADDouble</a> &gt; &amp;Y_in, const <a class="el" href="namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc">ADDouble</a> &amp;T9, const <a class="el" href="namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc">ADDouble</a> &amp;rho) const</td></tr>
-<tr class="memdesc:a71a3d1181b90c3becdc5d9a3da05b9c9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates all derivatives (dY/dt) and the energy generation rate (automatic differentiation).  <br /></td></tr>
-<tr class="separator:a71a3d1181b90c3becdc5d9a3da05b9c9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aef12443d7980301d8bb89f4ba4890450" id="r_aef12443d7980301d8bb89f4ba4890450"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aef12443d7980301d8bb89f4ba4890450">calculateAllDerivativesUsingPrecomputation</a> (const fourdst::composition::Composition &amp;comp, const std::vector&lt; double &gt; &amp;bare_rates, const std::vector&lt; double &gt; &amp;bare_reverse_rates, double T9, double rho) const</td></tr>
+<tr class="separator:aef12443d7980301d8bb89f4ba4890450"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2bea809d2efb3a5e7cc065ec80baebce" id="r_a2bea809d2efb3a5e7cc065ec80baebce"><td class="memTemplParams" colspan="2">template&lt;IsArithmeticOrAD T&gt; </td></tr>
+<tr class="memitem:a2bea809d2efb3a5e7cc065ec80baebce"><td class="memTemplItemLeft" align="right" valign="top">T&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#a2bea809d2efb3a5e7cc065ec80baebce">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const std::vector&lt; T &gt; &amp;Y, const T T9, const T rho, T Ye, T mue) const</td></tr>
+<tr class="memdesc:a2bea809d2efb3a5e7cc065ec80baebce"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the molar reaction flow for a given reaction.  <br /></td></tr>
+<tr class="separator:a2bea809d2efb3a5e7cc065ec80baebce"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a972d0705351167dc889a2f6c442e7a93" id="r_a972d0705351167dc889a2f6c442e7a93"><td class="memTemplParams" colspan="2">template&lt;IsArithmeticOrAD T&gt; </td></tr>
+<tr class="memitem:a972d0705351167dc889a2f6c442e7a93"><td class="memTemplItemLeft" align="right" valign="top">T&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#a972d0705351167dc889a2f6c442e7a93">calculateReverseMolarReactionFlow</a> (const T T9, const T rho, std::vector&lt; T &gt; screeningFactors, const std::vector&lt; T &gt; &amp;Y, size_t reactionIndex, const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction) const</td></tr>
+<tr class="separator:a972d0705351167dc889a2f6c442e7a93"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8873331f5ae40a3f640dedbbed685ed9" id="r_a8873331f5ae40a3f640dedbbed685ed9"><td class="memTemplParams" colspan="2">template&lt;IsArithmeticOrAD T&gt; </td></tr>
+<tr class="memitem:a8873331f5ae40a3f640dedbbed685ed9"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; T &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#a8873331f5ae40a3f640dedbbed685ed9">calculateAllDerivatives</a> (const std::vector&lt; T &gt; &amp;Y_in, T T9, T rho, T Ye, T mue) const</td></tr>
+<tr class="memdesc:a8873331f5ae40a3f640dedbbed685ed9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates all derivatives (dY/dt) and the energy generation rate.  <br /></td></tr>
+<tr class="separator:a8873331f5ae40a3f640dedbbed685ed9"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
 Private Attributes</h2></td></tr>
@@ -301,9 +300,12 @@ Private Attributes</h2></td></tr>
 <tr class="separator:a483979fc154adc88d029b3b672066d53"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a10c01bc20ae668c2857efb2a1783098e" id="r_a10c01bc20ae668c2857efb2a1783098e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html">constants</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a10c01bc20ae668c2857efb2a1783098e">m_constants</a></td></tr>
 <tr class="separator:a10c01bc20ae668c2857efb2a1783098e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acb7c4f5108b0efeae48ad15598e808c3" id="r_acb7c4f5108b0efeae48ad15598e808c3"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#acb7c4f5108b0efeae48ad15598e808c3">m_reactions</a></td></tr>
-<tr class="memdesc:acb7c4f5108b0efeae48ad15598e808c3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of REACLIB reactions in the network.  <br /></td></tr>
-<tr class="separator:acb7c4f5108b0efeae48ad15598e808c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9ac5893030802b0b846552949e866340" id="r_a9ac5893030802b0b846552949e866340"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">rates::weak::WeakRateInterpolator</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9ac5893030802b0b846552949e866340">m_weakRateInterpolator</a></td></tr>
+<tr class="memdesc:a9ac5893030802b0b846552949e866340"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interpolator for weak reaction rates.  <br /></td></tr>
+<tr class="separator:a9ac5893030802b0b846552949e866340"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad3b97595871d1f62ee7f4726b601ebef" id="r_ad3b97595871d1f62ee7f4726b601ebef"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad3b97595871d1f62ee7f4726b601ebef">m_reactions</a></td></tr>
+<tr class="memdesc:ad3b97595871d1f62ee7f4726b601ebef"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of REACLIB reactions in the network.  <br /></td></tr>
+<tr class="separator:ad3b97595871d1f62ee7f4726b601ebef"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a5d6cc63b99b467c2a976d1fbaaa1dfa3" id="r_a5d6cc63b99b467c2a976d1fbaaa1dfa3"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; std::string_view, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5d6cc63b99b467c2a976d1fbaaa1dfa3">m_reactionIDMap</a></td></tr>
 <tr class="memdesc:a5d6cc63b99b467c2a976d1fbaaa1dfa3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map from reaction ID to REACLIBReaction. //PERF: This makes copies of REACLIBReaction and could be a performance bottleneck.  <br /></td></tr>
 <tr class="separator:a5d6cc63b99b467c2a976d1fbaaa1dfa3"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -316,6 +318,9 @@ Private Attributes</h2></td></tr>
 <tr class="memitem:ad8237c252145a75092202d00f5e1ddf7" id="r_ad8237c252145a75092202d00f5e1ddf7"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad8237c252145a75092202d00f5e1ddf7">m_speciesToIndexMap</a></td></tr>
 <tr class="memdesc:ad8237c252145a75092202d00f5e1ddf7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map from species to their index in the stoichiometry matrix.  <br /></td></tr>
 <tr class="separator:ad8237c252145a75092202d00f5e1ddf7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8ff064c9996772281984f88ee492d04a" id="r_a8ff064c9996772281984f88ee492d04a"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; size_t, fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8ff064c9996772281984f88ee492d04a">m_indexToSpeciesMap</a></td></tr>
+<tr class="memdesc:a8ff064c9996772281984f88ee492d04a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map from index to species in the stoichiometry matrix.  <br /></td></tr>
+<tr class="separator:a8ff064c9996772281984f88ee492d04a"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:ad1cb5fd32efc37668e2d9ecf0c72ad24" id="r_ad1cb5fd32efc37668e2d9ecf0c72ad24"><td class="memItemLeft" align="right" valign="top">boost::numeric::ublas::compressed_matrix&lt; int &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad1cb5fd32efc37668e2d9ecf0c72ad24">m_stoichiometryMatrix</a></td></tr>
 <tr class="memdesc:ad1cb5fd32efc37668e2d9ecf0c72ad24"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stoichiometry matrix (species x reactions).  <br /></td></tr>
 <tr class="separator:ad1cb5fd32efc37668e2d9ecf0c72ad24"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -325,6 +330,9 @@ Private Attributes</h2></td></tr>
 <tr class="memitem:a2e22b111f6d00ecc9e3804a71f1ce876" id="r_a2e22b111f6d00ecc9e3804a71f1ce876"><td class="memItemLeft" align="right" valign="top">CppAD::ADFun&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2e22b111f6d00ecc9e3804a71f1ce876">m_rhsADFun</a></td></tr>
 <tr class="memdesc:a2e22b111f6d00ecc9e3804a71f1ce876"><td class="mdescLeft">&#160;</td><td class="mdescRight">CppAD function for the right-hand side of the ODE.  <br /></td></tr>
 <tr class="separator:a2e22b111f6d00ecc9e3804a71f1ce876"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1d5f6a3f217af7f4d0f95bdf7916b774" id="r_a1d5f6a3f217af7f4d0f95bdf7916b774"><td class="memItemLeft" align="right" valign="top">CppAD::ADFun&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1d5f6a3f217af7f4d0f95bdf7916b774">m_epsADFun</a></td></tr>
+<tr class="memdesc:a1d5f6a3f217af7f4d0f95bdf7916b774"><td class="mdescLeft">&#160;</td><td class="mdescRight">CppAD function for the energy generation rate.  <br /></td></tr>
+<tr class="separator:a1d5f6a3f217af7f4d0f95bdf7916b774"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a250cc6350dc052fbdfdf9a02066e7891" id="r_a250cc6350dc052fbdfdf9a02066e7891"><td class="memItemLeft" align="right" valign="top">CppAD::sparse_jac_work&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a250cc6350dc052fbdfdf9a02066e7891">m_jac_work</a></td></tr>
 <tr class="memdesc:a250cc6350dc052fbdfdf9a02066e7891"><td class="mdescLeft">&#160;</td><td class="mdescRight">Work object for sparse Jacobian calculations.  <br /></td></tr>
 <tr class="separator:a250cc6350dc052fbdfdf9a02066e7891"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -367,8 +375,8 @@ Private Attributes</h2></td></tr>
 </ul>
 <dl class="section see"><dt>See also</dt><dd><a class="el" href="engine__abstract_8h.html" title="Abstract interfaces for reaction network engines in GridFire.">engine_abstract.h</a> </dd></dl>
 </div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
-<a id="afad967546b611d9c005268760feb75d5" name="afad967546b611d9c005268760feb75d5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afad967546b611d9c005268760feb75d5">&#9670;&#160;</a></span>GraphEngine() <span class="overload">[1/3]</span></h2>
+<a id="a38aaafb1d9a6548bc8e8cb672417bbbe" name="a38aaafb1d9a6548bc8e8cb672417bbbe"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a38aaafb1d9a6548bc8e8cb672417bbbe">&#9670;&#160;</a></span>GraphEngine() <span class="overload">[1/3]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -384,7 +392,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a></td>          <td class="paramname"><span class="paramname"><em>buildDepth</em></span><span class="paramdefsep"> = </span><span class="paramdefval"><a class="el" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a></span>&#160;)</td>
+          <td class="paramtype"><a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a></td>          <td class="paramname"><span class="paramname"><em>buildDepth</em></span><span class="paramdefsep"> = </span><span class="paramdefval"><a class="el" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a></span>&#160;)</td>
         </tr>
       </table>
   </td>
@@ -402,12 +410,12 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 <p>This constructor builds the reaction network from the given composition using the <code>build_reaclib_nuclear_network</code> function.</p>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacegridfire.html#aedddb89e400a6111f69bfe0c3fd4214e" title="Builds a nuclear reaction network from the Reaclib library based on an initial composition.">build_reaclib_nuclear_network</a> </dd></dl>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacegridfire.html#a384323338f13166d87c7ac047434bd38" title="Builds a nuclear reaction network from the Reaclib library based on an initial composition.">build_reaclib_nuclear_network</a> </dd></dl>
 
 </div>
 </div>
-<a id="a39d9838ed40bea71ee6c552bb5969026" name="a39d9838ed40bea71ee6c552bb5969026"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a39d9838ed40bea71ee6c552bb5969026">&#9670;&#160;</a></span>GraphEngine() <span class="overload">[2/3]</span></h2>
+<a id="a3a03fbd767f495ca667f23789b07c293" name="a3a03fbd767f495ca667f23789b07c293"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3a03fbd767f495ca667f23789b07c293">&#9670;&#160;</a></span>GraphEngine() <span class="overload">[2/3]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -428,7 +436,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a></td>          <td class="paramname"><span class="paramname"><em>buildDepth</em></span><span class="paramdefsep"> = </span><span class="paramdefval"><a class="el" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a></span>&#160;)</td>
+          <td class="paramtype"><a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a></td>          <td class="paramname"><span class="paramname"><em>buildDepth</em></span><span class="paramdefsep"> = </span><span class="paramdefval"><a class="el" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a></span>&#160;)</td>
         </tr>
       </table>
   </td>
@@ -440,8 +448,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a1e7e851dfa21d41c2dc533ba56fc4c7b" name="a1e7e851dfa21d41c2dc533ba56fc4c7b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1e7e851dfa21d41c2dc533ba56fc4c7b">&#9670;&#160;</a></span>GraphEngine() <span class="overload">[3/3]</span></h2>
+<a id="a514cc6b5482d6a27902975da17b5e39e" name="a514cc6b5482d6a27902975da17b5e39e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a514cc6b5482d6a27902975da17b5e39e">&#9670;&#160;</a></span>GraphEngine() <span class="overload">[3/3]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -452,7 +460,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">gridfire::GraphEngine::GraphEngine </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -475,100 +483,8 @@ Private Attributes</h2></td></tr>
 </div>
 </div>
 <h2 class="groupheader">Member Function Documentation</h2>
-<a id="a71a3d1181b90c3becdc5d9a3da05b9c9" name="a71a3d1181b90c3becdc5d9a3da05b9c9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a71a3d1181b90c3becdc5d9a3da05b9c9">&#9670;&#160;</a></span>calculateAllDerivatives() <span class="overload">[1/3]</span></h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname"><a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; <a class="el" href="namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc">ADDouble</a> &gt; gridfire::GraphEngine::calculateAllDerivatives </td>
-          <td>(</td>
-          <td class="paramtype">const std::vector&lt; <a class="el" href="namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc">ADDouble</a> &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_in</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc">ADDouble</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc">ADDouble</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel private">private</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Calculates all derivatives (dY/dt) and the energy generation rate (automatic differentiation). </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">Y_in</td><td>Vector of current abundances for all species. </td></tr>
-    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
-    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1_step_derivatives.html" title="Structure holding derivatives and energy generation for a network step.">StepDerivatives&lt;ADDouble&gt;</a> containing dY/dt and energy generation rate.</dd></dl>
-<p>This method calculates the time derivatives of all species and the specific nuclear energy generation rate for the current state using automatic differentiation. </p>
-
-</div>
-</div>
-<a id="aaf4d54e4b774ab8ec8eabec006579d31" name="aaf4d54e4b774ab8ec8eabec006579d31"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aaf4d54e4b774ab8ec8eabec006579d31">&#9670;&#160;</a></span>calculateAllDerivatives() <span class="overload">[2/3]</span></h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname"><a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt; gridfire::GraphEngine::calculateAllDerivatives </td>
-          <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_in</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel private">private</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Calculates all derivatives (dY/dt) and the energy generation rate (double precision). </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">Y_in</td><td>Vector of current abundances for all species. </td></tr>
-    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
-    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1_step_derivatives.html" title="Structure holding derivatives and energy generation for a network step.">StepDerivatives&lt;double&gt;</a> containing dY/dt and energy generation rate.</dd></dl>
-<p>This method calculates the time derivatives of all species and the specific nuclear energy generation rate for the current state using double precision arithmetic. </p>
-
-</div>
-</div>
-<a id="af41df9ce979b6410e12642cb093916c9" name="af41df9ce979b6410e12642cb093916c9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af41df9ce979b6410e12642cb093916c9">&#9670;&#160;</a></span>calculateAllDerivatives() <span class="overload">[3/3]</span></h2>
+<a id="a8873331f5ae40a3f640dedbbed685ed9" name="a8873331f5ae40a3f640dedbbed685ed9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8873331f5ae40a3f640dedbbed685ed9">&#9670;&#160;</a></span>calculateAllDerivatives()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -591,7 +507,17 @@ template&lt;IsArithmeticOrAD T&gt; </div>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">T</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">T</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -610,9 +536,11 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 </dl>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y_in</td><td>Vector of current abundances for all species. </td></tr>
+    <tr><td class="paramname">Y_in</td><td>Vector of molar abundances for all species in the network. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+    <tr><td class="paramname">Ye</td><td></td></tr>
+    <tr><td class="paramname">mue</td><td></td></tr>
   </table>
   </dd>
 </dl>
@@ -621,8 +549,8 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 
 </div>
 </div>
-<a id="a97f98706b51fbe0d167ed81ffe58c438" name="a97f98706b51fbe0d167ed81ffe58c438"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a97f98706b51fbe0d167ed81ffe58c438">&#9670;&#160;</a></span>calculateAllDerivativesUsingPrecomputation()</h2>
+<a id="aef12443d7980301d8bb89f4ba4890450" name="aef12443d7980301d8bb89f4ba4890450"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aef12443d7980301d8bb89f4ba4890450">&#9670;&#160;</a></span>calculateAllDerivativesUsingPrecomputation()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -633,7 +561,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
         <tr>
           <td class="memname"><a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt; gridfire::GraphEngine::calculateAllDerivativesUsingPrecomputation </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_in</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -665,8 +593,56 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 
 </div>
 </div>
-<a id="a9245642b741f215e52861d00e756fb3f" name="a9245642b741f215e52861d00e756fb3f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9245642b741f215e52861d00e756fb3f">&#9670;&#160;</a></span>calculateMolarReactionFlow() <span class="overload">[1/2]</span></h2>
+<a id="ae0c9159cc3467fd85d1a5895f1786c47" name="ae0c9159cc3467fd85d1a5895f1786c47"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae0c9159cc3467fd85d1a5895f1786c47">&#9670;&#160;</a></span>calculateEpsDerivatives()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a> gridfire::GraphEngine::calculateEpsDerivatives </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculate the derivatives of the energy generation rate with respect to T and rho. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a> containing dEps/dT and dEps/dRho.</dd></dl>
+<p>This method computes the partial derivatives of the specific nuclear energy generation rate with respect to temperature and density for the current state. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a264bd5a8891c8c5f0dff32867effe547">gridfire::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a1675859971f0bd2db0650f8da54ed7eb" name="a1675859971f0bd2db0650f8da54ed7eb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1675859971f0bd2db0650f8da54ed7eb">&#9670;&#160;</a></span>calculateMolarReactionFlow() <span class="overload">[1/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -682,17 +658,17 @@ template&lt;IsArithmeticOrAD T&gt; </div>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -706,7 +682,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
     <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the flow. </td></tr>
-    <tr><td class="paramname">Y</td><td>Vector of current abundances. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -715,12 +691,12 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 <dl class="section return"><dt>Returns</dt><dd>Molar flow rate for the reaction (e.g., mol/g/s).</dd></dl>
 <p>This method computes the net rate at which the given reaction proceeds under the current state. </p>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a39cf5b738eea0a275bf8c0eb5789fab3">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="a5e96b5a0b34c8932f0e14eabda57f1a4" name="a5e96b5a0b34c8932f0e14eabda57f1a4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5e96b5a0b34c8932f0e14eabda57f1a4">&#9670;&#160;</a></span>calculateMolarReactionFlow() <span class="overload">[2/2]</span></h2>
+<a id="a2bea809d2efb3a5e7cc065ec80baebce" name="a2bea809d2efb3a5e7cc065ec80baebce"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2bea809d2efb3a5e7cc065ec80baebce">&#9670;&#160;</a></span>calculateMolarReactionFlow() <span class="overload">[2/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -748,7 +724,17 @@ template&lt;IsArithmeticOrAD T&gt; </div>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const T</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">const T</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -768,9 +754,11 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
     <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the flow. </td></tr>
-    <tr><td class="paramname">Y</td><td>Vector of current abundances. </td></tr>
+    <tr><td class="paramname">Y</td><td>Vector of molar abundances for all species in the network. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+    <tr><td class="paramname">Ye</td><td></td></tr>
+    <tr><td class="paramname">mue</td><td></td></tr>
   </table>
   </dd>
 </dl>
@@ -779,8 +767,8 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 
 </div>
 </div>
-<a id="a17774cd9ffcf1ba94019df766a0984a0" name="a17774cd9ffcf1ba94019df766a0984a0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a17774cd9ffcf1ba94019df766a0984a0">&#9670;&#160;</a></span>calculateReverseMolarReactionFlow()</h2>
+<a id="a972d0705351167dc889a2f6c442e7a93" name="a972d0705351167dc889a2f6c442e7a93"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a972d0705351167dc889a2f6c442e7a93">&#9670;&#160;</a></span>calculateReverseMolarReactionFlow()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -793,12 +781,12 @@ template&lt;IsArithmeticOrAD T&gt; </div>
         <tr>
           <td class="memname">T gridfire::GraphEngine::calculateReverseMolarReactionFlow </td>
           <td>(</td>
-          <td class="paramtype">T</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">const T</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">T</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+          <td class="paramtype">const T</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -808,7 +796,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">std::vector&lt; T &gt;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const std::vector&lt; T &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -818,7 +806,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html">reaction::LogicalReaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reaction</em></span>&#160;) const</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reaction</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -830,8 +818,8 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 
 </div>
 </div>
-<a id="a0b7b85f824e1021ae6e56b644db53b28" name="a0b7b85f824e1021ae6e56b644db53b28"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0b7b85f824e1021ae6e56b644db53b28">&#9670;&#160;</a></span>calculateReverseRate()</h2>
+<a id="accf01734524a706ad03c9b9898af54b3" name="accf01734524a706ad03c9b9898af54b3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#accf01734524a706ad03c9b9898af54b3">&#9670;&#160;</a></span>calculateReverseRate()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -847,7 +835,17 @@ template&lt;IsArithmeticOrAD T&gt; </div>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>&#160;) const</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -862,6 +860,8 @@ template&lt;IsArithmeticOrAD T&gt; </div>
   <table class="params">
     <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the reverse rate. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td></td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
   </table>
   </dd>
 </dl>
@@ -922,8 +922,8 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 
 </div>
 </div>
-<a id="af28950c5af3a92eb03a1a64ed0f913e7" name="af28950c5af3a92eb03a1a64ed0f913e7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af28950c5af3a92eb03a1a64ed0f913e7">&#9670;&#160;</a></span>calculateReverseRateTwoBodyDerivative()</h2>
+<a id="a9340db538a507b96e186b60ba0450205" name="a9340db538a507b96e186b60ba0450205"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9340db538a507b96e186b60ba0450205">&#9670;&#160;</a></span>calculateReverseRateTwoBodyDerivative()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -939,12 +939,22 @@ template&lt;IsArithmeticOrAD T&gt; </div>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>reverseRate</em></span>&#160;) const</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>reverseRate</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -956,8 +966,8 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 
 </div>
 </div>
-<a id="aaed3743a52246b0f7bf03995e1c12081" name="aaed3743a52246b0f7bf03995e1c12081"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aaed3743a52246b0f7bf03995e1c12081">&#9670;&#160;</a></span>calculateRHSAndEnergy()</h2>
+<a id="a7acc98647427981a9602d251c9288012" name="a7acc98647427981a9602d251c9288012"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7acc98647427981a9602d251c9288012">&#9670;&#160;</a></span>calculateRHSAndEnergy()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -968,17 +978,17 @@ template&lt;IsArithmeticOrAD T&gt; </div>
         <tr>
           <td class="memname">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt; gridfire::GraphEngine::calculateRHSAndEnergy </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -991,7 +1001,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 <p>Calculates the right-hand side (dY/dt) and energy generation rate. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y</td><td>Vector of current abundances for all species. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -1001,7 +1011,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 <p>This method calculates the time derivatives of all species and the specific nuclear energy generation rate for the current state.</p>
 <dl class="section see"><dt>See also</dt><dd><a class="el" href="structgridfire_1_1_step_derivatives.html" title="Structure holding derivatives and energy generation for a network step.">StepDerivatives</a> </dd></dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb">gridfire::Engine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740">gridfire::Engine</a>.</p>
 
 </div>
 </div>
@@ -1124,8 +1134,8 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 </div><!-- fragment --> 
 </div>
 </div>
-<a id="ad049a295e2bb0f3e97b76d5742875119" name="ad049a295e2bb0f3e97b76d5742875119"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad049a295e2bb0f3e97b76d5742875119">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[1/2]</span></h2>
+<a id="ae11f6267077025ca342e2e263ad87e5e" name="ae11f6267077025ca342e2e263ad87e5e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae11f6267077025ca342e2e263ad87e5e">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[1/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1136,17 +1146,17 @@ template&lt;IsArithmeticOrAD T&gt; </div>
         <tr>
           <td class="memname">void gridfire::GraphEngine::generateJacobianMatrix </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_dynamic</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -1159,21 +1169,21 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 <p>Generates the Jacobian matrix for the current state. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y_dynamic</td><td>Vector of current abundances. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3.</td></tr>
   </table>
   </dd>
 </dl>
-<p>This method computes and stores the Jacobian matrix (∂(dY/dt)_i/∂Y_j) for the current state using automatic differentiation. The matrix can then be accessed via <code><a class="el" href="#a303e6093591cde91430f866a04a8be7c" title="Gets an entry from the previously generated Jacobian matrix.">getJacobianMatrixEntry()</a></code>.</p>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="#a303e6093591cde91430f866a04a8be7c" title="Gets an entry from the previously generated Jacobian matrix.">getJacobianMatrixEntry()</a> </dd></dl>
+<p>This method computes and stores the Jacobian matrix (∂(dY/dt)_i/∂Y_j) for the current state using automatic differentiation. The matrix can then be accessed via <code><a class="el" href="#a8ab5308629b8707922e5954776254aa6" title="Gets an entry from the previously generated Jacobian matrix.">getJacobianMatrixEntry()</a></code>.</p>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="#a8ab5308629b8707922e5954776254aa6" title="Gets an entry from the previously generated Jacobian matrix.">getJacobianMatrixEntry()</a> </dd></dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a21d15531309456ee83f7675251e7a1bf">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="a9687eef88c97eeb7f8680acb230f8ac1" name="a9687eef88c97eeb7f8680acb230f8ac1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9687eef88c97eeb7f8680acb230f8ac1">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[2/2]</span></h2>
+<a id="a4e0bbc6448999e2ef06879270b7d3dec" name="a4e0bbc6448999e2ef06879270b7d3dec"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4e0bbc6448999e2ef06879270b7d3dec">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[2/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1184,7 +1194,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
         <tr>
           <td class="memname">void gridfire::GraphEngine::generateJacobianMatrix </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_dynamic</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -1209,7 +1219,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 </table>
 </div><div class="memdoc">
 
-<p>Reimplemented from <a class="el" href="classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7">gridfire::DynamicEngine</a>.</p>
+<p>Reimplemented from <a class="el" href="classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -1274,8 +1284,8 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 
 </div>
 </div>
-<a id="a303e6093591cde91430f866a04a8be7c" name="a303e6093591cde91430f866a04a8be7c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a303e6093591cde91430f866a04a8be7c">&#9670;&#160;</a></span>getJacobianMatrixEntry()</h2>
+<a id="a8ab5308629b8707922e5954776254aa6" name="a8ab5308629b8707922e5954776254aa6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8ab5308629b8707922e5954776254aa6">&#9670;&#160;</a></span>getJacobianMatrixEntry()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1286,12 +1296,12 @@ template&lt;IsArithmeticOrAD T&gt; </div>
         <tr>
           <td class="memname">double gridfire::GraphEngine::getJacobianMatrixEntry </td>
           <td>(</td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>i</em></span>, </td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>rowSpecies</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>j</em></span>&#160;) const</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>colSpecies</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -1304,16 +1314,16 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 <p>Gets an entry from the previously generated Jacobian matrix. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">i</td><td>Row index (species index). </td></tr>
-    <tr><td class="paramname">j</td><td>Column index (species index). </td></tr>
+    <tr><td class="paramname">rowSpecies</td><td>Species corresponding to the row index (i). </td></tr>
+    <tr><td class="paramname">colSpecies</td><td>Species corresponding to the column index (j). </td></tr>
   </table>
   </dd>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>Value of the Jacobian matrix at (i, j).</dd></dl>
-<p>The Jacobian must have been generated by <code><a class="el" href="#ad049a295e2bb0f3e97b76d5742875119" title="Generates the Jacobian matrix for the current state.">generateJacobianMatrix()</a></code> before calling this.</p>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="#ad049a295e2bb0f3e97b76d5742875119" title="Generates the Jacobian matrix for the current state.">generateJacobianMatrix()</a> </dd></dl>
+<p>The Jacobian must have been generated by <code><a class="el" href="#ae11f6267077025ca342e2e263ad87e5e" title="Generates the Jacobian matrix for the current state.">generateJacobianMatrix()</a></code> before calling this.</p>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="#ae11f6267077025ca342e2e263ad87e5e" title="Generates the Jacobian matrix for the current state.">generateJacobianMatrix()</a> </dd></dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a88dbf350dc0ea3e2b64d825f489e0d60">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -1351,8 +1361,8 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 
 </div>
 </div>
-<a id="ad45650d10fc5dff1673ae3f806d067da" name="ad45650d10fc5dff1673ae3f806d067da"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad45650d10fc5dff1673ae3f806d067da">&#9670;&#160;</a></span>getNetworkReactions()</h2>
+<a id="a3b7f3ba85821165f58f168bc68f86b2d" name="a3b7f3ba85821165f58f168bc68f86b2d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3b7f3ba85821165f58f168bc68f86b2d">&#9670;&#160;</a></span>getNetworkReactions()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1361,7 +1371,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp; gridfire::GraphEngine::getNetworkReactions </td>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp; gridfire::GraphEngine::getNetworkReactions </td>
           <td>(</td>
           <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
           <td> const</td>
@@ -1375,9 +1385,9 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 </div><div class="memdoc">
 
 <p>Gets the set of logical reactions in the network. </p>
-<dl class="section return"><dt>Returns</dt><dd>Reference to the <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31" title="A set of logical reactions.">LogicalReactionSet</a> containing all reactions. </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>Reference to the LogicalReactionSet containing all reactions. </dd></dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#af496e04f7be9a0a51ac65dc95f901ffe">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -1472,8 +1482,8 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 
 </div>
 </div>
-<a id="aef8f6bde24d27345067b71084330c7da" name="aef8f6bde24d27345067b71084330c7da"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aef8f6bde24d27345067b71084330c7da">&#9670;&#160;</a></span>getSpeciesDestructionTimescales()</h2>
+<a id="a47df5a9c448dd1ce8654df819a6cc8ff" name="a47df5a9c448dd1ce8654df819a6cc8ff"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a47df5a9c448dd1ce8654df819a6cc8ff">&#9670;&#160;</a></span>getSpeciesDestructionTimescales()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1484,7 +1494,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
         <tr>
           <td class="memname">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt; gridfire::GraphEngine::getSpeciesDestructionTimescales </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -1504,12 +1514,12 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 </table>
 </div><div class="memdoc">
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a25c040d3078f6ff2ef38f733eb68f1fa">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="a914f6abc61805cddaebcb8f3cf470dda" name="a914f6abc61805cddaebcb8f3cf470dda"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a914f6abc61805cddaebcb8f3cf470dda">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
+<a id="a9e426e6c178dd80bd58090489d3b2be9" name="a9e426e6c178dd80bd58090489d3b2be9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9e426e6c178dd80bd58090489d3b2be9">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1518,7 +1528,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">int gridfire::GraphEngine::getSpeciesIndex </td>
+          <td class="memname">size_t gridfire::GraphEngine::getSpeciesIndex </td>
           <td>(</td>
           <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
           <td> const</td>
@@ -1541,12 +1551,12 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 <dl class="section return"><dt>Returns</dt><dd>Index of the species in the network, or -1 if not found.</dd></dl>
 <p>This method returns the index of the given species in the network's species vector. If the species is not found, it returns -1. </p>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a8f66fb76c9f983ee93bf8b95cdc85596">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="a65f9f33cddb0bbd1da7c9d0cff23d581" name="a65f9f33cddb0bbd1da7c9d0cff23d581"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a65f9f33cddb0bbd1da7c9d0cff23d581">&#9670;&#160;</a></span>getSpeciesTimescales()</h2>
+<a id="a7dde968244f3c4934c7738445c709232" name="a7dde968244f3c4934c7738445c709232"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7dde968244f3c4934c7738445c709232">&#9670;&#160;</a></span>getSpeciesTimescales()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1557,7 +1567,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
         <tr>
           <td class="memname">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt; gridfire::GraphEngine::getSpeciesTimescales </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -1580,7 +1590,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 <p>Computes timescales for all species in the network. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y</td><td>Vector of current abundances. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -1589,12 +1599,12 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 <dl class="section return"><dt>Returns</dt><dd>Map from Species to their characteristic timescales (s).</dd></dl>
 <p>This method estimates the timescale for abundance change of each species, which can be used for timestep control or diagnostics. </p>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ae7114f5ebc6667b5e5971c0450ed03d9">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="a6b5feaf788bade212b7c8df7ac8c8152" name="a6b5feaf788bade212b7c8df7ac8c8152"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6b5feaf788bade212b7c8df7ac8c8152">&#9670;&#160;</a></span>getStoichiometryMatrixEntry()</h2>
+<a id="ad90a2d770ebf098f0d6d5f5339961e95" name="ad90a2d770ebf098f0d6d5f5339961e95"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad90a2d770ebf098f0d6d5f5339961e95">&#9670;&#160;</a></span>getStoichiometryMatrixEntry()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1605,12 +1615,12 @@ template&lt;IsArithmeticOrAD T&gt; </div>
         <tr>
           <td class="memname">int gridfire::GraphEngine::getStoichiometryMatrixEntry </td>
           <td>(</td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>speciesIndex</em></span>, </td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>reactionIndex</em></span>&#160;) const</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reaction</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -1623,8 +1633,8 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 <p>Gets an entry from the stoichiometry matrix. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">speciesIndex</td><td>Index of the species. </td></tr>
-    <tr><td class="paramname">reactionIndex</td><td>Index of the reaction. </td></tr>
+    <tr><td class="paramname">species</td><td>Species to look up stoichiometry for. </td></tr>
+    <tr><td class="paramname">reaction</td><td><a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> to find. </td></tr>
   </table>
   </dd>
 </dl>
@@ -1632,7 +1642,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 <p>The stoichiometry matrix must have been generated by <code><a class="el" href="#aed726d36ee2b3796beff6067a1e4db38" title="Generates the stoichiometry matrix for the network.">generateStoichiometryMatrix()</a></code>.</p>
 <dl class="section see"><dt>See also</dt><dd><a class="el" href="#aed726d36ee2b3796beff6067a1e4db38" title="Generates the stoichiometry matrix for the network.">generateStoichiometryMatrix()</a> </dd></dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad19c8451b6f624e2938f771cc067d5c1">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -1951,8 +1961,8 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 
 </div>
 </div>
-<a id="a95563f6bc86007d9ee053a0f1e15b889" name="a95563f6bc86007d9ee053a0f1e15b889"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a95563f6bc86007d9ee053a0f1e15b889">&#9670;&#160;</a></span>recordADTape()</h2>
+<a id="ab29ef3225c8fcda012b10765df064b63" name="ab29ef3225c8fcda012b10765df064b63"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab29ef3225c8fcda012b10765df064b63">&#9670;&#160;</a></span>recordADTape()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1964,7 +1974,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
           <td class="memname">void gridfire::GraphEngine::recordADTape </td>
           <td>(</td>
           <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td></td>
+          <td> const</td>
         </tr>
       </table>
   </td>
@@ -1983,6 +1993,31 @@ template&lt;IsArithmeticOrAD T&gt; </div>
   </dd>
 </dl>
 
+</div>
+</div>
+<a id="a16b8cd1b0e19b4d4519596a4e22eaf5c" name="a16b8cd1b0e19b4d4519596a4e22eaf5c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a16b8cd1b0e19b4d4519596a4e22eaf5c">&#9670;&#160;</a></span>recordEpsADTape()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::GraphEngine::recordEpsADTape </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
 </div>
 </div>
 <a id="a8d0c0bd54a2908cff62dae7af0c149b5" name="a8d0c0bd54a2908cff62dae7af0c149b5"></a>
@@ -2013,8 +2048,8 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 
 </div>
 </div>
-<a id="a371ba0881d6903ddb2d586faa61805d0" name="a371ba0881d6903ddb2d586faa61805d0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a371ba0881d6903ddb2d586faa61805d0">&#9670;&#160;</a></span>setNetworkReactions()</h2>
+<a id="a52288e2629609c8438a3c9bc3f910016" name="a52288e2629609c8438a3c9bc3f910016"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a52288e2629609c8438a3c9bc3f910016">&#9670;&#160;</a></span>setNetworkReactions()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -2025,7 +2060,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
         <tr>
           <td class="memname">void gridfire::GraphEngine::setNetworkReactions </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -2036,7 +2071,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 </table>
 </div><div class="memdoc">
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a49025489901e22a20cdf99b455ff2ff0">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -2189,7 +2224,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 <p>This method is intended to be implemented by derived classes to update their internal state based on the provided network conditions. For example, an adaptive engine might use this to re-evaluate which reactions and species are active. For other engines that do not support manually updating, this method might do nothing.</p>
 <dl class="section user"><dt>Usage Example:</dt><dd><div class="fragment"><div class="line"><a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a> input = { ... };</div>
 <div class="line">myEngine.update(input);</div>
-<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> network.h:53</div></div>
+<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> network.h:51</div></div>
 </div><!-- fragment --></dd></dl>
 <dl class="section post"><dt>Postcondition</dt><dd>The internal state of the engine is updated to reflect the new conditions. </dd></dl>
 
@@ -2313,6 +2348,30 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 </table>
 </div><div class="memdoc">
 
+</div>
+</div>
+<a id="a1d5f6a3f217af7f4d0f95bdf7916b774" name="a1d5f6a3f217af7f4d0f95bdf7916b774"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1d5f6a3f217af7f4d0f95bdf7916b774">&#9670;&#160;</a></span>m_epsADFun</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">CppAD::ADFun&lt;double&gt; gridfire::GraphEngine::m_epsADFun</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>CppAD function for the energy generation rate. </p>
+
 </div>
 </div>
 <a id="a19b2eea0e8d05ac90f9fd7120bdc6e06" name="a19b2eea0e8d05ac90f9fd7120bdc6e06"></a>
@@ -2337,6 +2396,30 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 
 <p>Full sparsity pattern for the Jacobian matrix. </p>
 
+</div>
+</div>
+<a id="a8ff064c9996772281984f88ee492d04a" name="a8ff064c9996772281984f88ee492d04a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8ff064c9996772281984f88ee492d04a">&#9670;&#160;</a></span>m_indexToSpeciesMap</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;size_t, fourdst::atomic::Species&gt; gridfire::GraphEngine::m_indexToSpeciesMap</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Map from index to species in the stoichiometry matrix. </p>
+
 </div>
 </div>
 <a id="a250cc6350dc052fbdfdf9a02066e7891" name="a250cc6350dc052fbdfdf9a02066e7891"></a>
@@ -2529,8 +2612,8 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 
 </div>
 </div>
-<a id="acb7c4f5108b0efeae48ad15598e808c3" name="acb7c4f5108b0efeae48ad15598e808c3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acb7c4f5108b0efeae48ad15598e808c3">&#9670;&#160;</a></span>m_reactions</h2>
+<a id="ad3b97595871d1f62ee7f4726b601ebef" name="ad3b97595871d1f62ee7f4726b601ebef"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad3b97595871d1f62ee7f4726b601ebef">&#9670;&#160;</a></span>m_reactions</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -2539,7 +2622,7 @@ template&lt;IsArithmeticOrAD T&gt; </div>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> gridfire::GraphEngine::m_reactions</td>
+          <td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> gridfire::GraphEngine::m_reactions</td>
         </tr>
       </table>
   </td>
@@ -2717,6 +2800,30 @@ template&lt;IsArithmeticOrAD T&gt; </div>
 
 <p>Flag to enable or disable reverse reactions. If false, only forward reactions are considered. </p>
 
+</div>
+</div>
+<a id="a9ac5893030802b0b846552949e866340" name="a9ac5893030802b0b846552949e866340"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9ac5893030802b0b846552949e866340">&#9670;&#160;</a></span>m_weakRateInterpolator</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">rates::weak::WeakRateInterpolator</a> gridfire::GraphEngine::m_weakRateInterpolator</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Interpolator for weak reaction rates. </p>
+
 </div>
 </div>
 <hr/>The documentation for this class was generated from the following files:<ul>
diff --git a/docs/html/classgridfire_1_1_graph_engine.js b/docs/html/classgridfire_1_1_graph_engine.js
index 7fdb4d26..69d37f4d 100644
--- a/docs/html/classgridfire_1_1_graph_engine.js
+++ b/docs/html/classgridfire_1_1_graph_engine.js
@@ -3,38 +3,37 @@ var classgridfire_1_1_graph_engine =
     [ "AtomicReverseRate", "classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html", "classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate" ],
     [ "constants", "structgridfire_1_1_graph_engine_1_1constants.html", "structgridfire_1_1_graph_engine_1_1constants" ],
     [ "PrecomputedReaction", "structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html", "structgridfire_1_1_graph_engine_1_1_precomputed_reaction" ],
-    [ "GraphEngine", "classgridfire_1_1_graph_engine.html#afad967546b611d9c005268760feb75d5", null ],
-    [ "GraphEngine", "classgridfire_1_1_graph_engine.html#a39d9838ed40bea71ee6c552bb5969026", null ],
-    [ "GraphEngine", "classgridfire_1_1_graph_engine.html#a1e7e851dfa21d41c2dc533ba56fc4c7b", null ],
-    [ "calculateAllDerivatives", "classgridfire_1_1_graph_engine.html#a71a3d1181b90c3becdc5d9a3da05b9c9", null ],
-    [ "calculateAllDerivatives", "classgridfire_1_1_graph_engine.html#aaf4d54e4b774ab8ec8eabec006579d31", null ],
-    [ "calculateAllDerivatives", "classgridfire_1_1_graph_engine.html#af41df9ce979b6410e12642cb093916c9", null ],
-    [ "calculateAllDerivativesUsingPrecomputation", "classgridfire_1_1_graph_engine.html#a97f98706b51fbe0d167ed81ffe58c438", null ],
-    [ "calculateMolarReactionFlow", "classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f", null ],
-    [ "calculateMolarReactionFlow", "classgridfire_1_1_graph_engine.html#a5e96b5a0b34c8932f0e14eabda57f1a4", null ],
-    [ "calculateReverseMolarReactionFlow", "classgridfire_1_1_graph_engine.html#a17774cd9ffcf1ba94019df766a0984a0", null ],
-    [ "calculateReverseRate", "classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28", null ],
+    [ "GraphEngine", "classgridfire_1_1_graph_engine.html#a38aaafb1d9a6548bc8e8cb672417bbbe", null ],
+    [ "GraphEngine", "classgridfire_1_1_graph_engine.html#a3a03fbd767f495ca667f23789b07c293", null ],
+    [ "GraphEngine", "classgridfire_1_1_graph_engine.html#a514cc6b5482d6a27902975da17b5e39e", null ],
+    [ "calculateAllDerivatives", "classgridfire_1_1_graph_engine.html#a8873331f5ae40a3f640dedbbed685ed9", null ],
+    [ "calculateAllDerivativesUsingPrecomputation", "classgridfire_1_1_graph_engine.html#aef12443d7980301d8bb89f4ba4890450", null ],
+    [ "calculateEpsDerivatives", "classgridfire_1_1_graph_engine.html#ae0c9159cc3467fd85d1a5895f1786c47", null ],
+    [ "calculateMolarReactionFlow", "classgridfire_1_1_graph_engine.html#a1675859971f0bd2db0650f8da54ed7eb", null ],
+    [ "calculateMolarReactionFlow", "classgridfire_1_1_graph_engine.html#a2bea809d2efb3a5e7cc065ec80baebce", null ],
+    [ "calculateReverseMolarReactionFlow", "classgridfire_1_1_graph_engine.html#a972d0705351167dc889a2f6c442e7a93", null ],
+    [ "calculateReverseRate", "classgridfire_1_1_graph_engine.html#accf01734524a706ad03c9b9898af54b3", null ],
     [ "calculateReverseRateTwoBody", "classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755", null ],
-    [ "calculateReverseRateTwoBodyDerivative", "classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7", null ],
-    [ "calculateRHSAndEnergy", "classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081", null ],
+    [ "calculateReverseRateTwoBodyDerivative", "classgridfire_1_1_graph_engine.html#a9340db538a507b96e186b60ba0450205", null ],
+    [ "calculateRHSAndEnergy", "classgridfire_1_1_graph_engine.html#a7acc98647427981a9602d251c9288012", null ],
     [ "collectAtomicReverseRateAtomicBases", "classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746", null ],
     [ "collectNetworkSpecies", "classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa", null ],
     [ "exportToCSV", "classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95", null ],
     [ "exportToDot", "classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929", null ],
-    [ "generateJacobianMatrix", "classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119", null ],
-    [ "generateJacobianMatrix", "classgridfire_1_1_graph_engine.html#a9687eef88c97eeb7f8680acb230f8ac1", null ],
+    [ "generateJacobianMatrix", "classgridfire_1_1_graph_engine.html#ae11f6267077025ca342e2e263ad87e5e", null ],
+    [ "generateJacobianMatrix", "classgridfire_1_1_graph_engine.html#a4e0bbc6448999e2ef06879270b7d3dec", null ],
     [ "generateStoichiometryMatrix", "classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38", null ],
     [ "getDepth", "classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4", null ],
-    [ "getJacobianMatrixEntry", "classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c", null ],
+    [ "getJacobianMatrixEntry", "classgridfire_1_1_graph_engine.html#a8ab5308629b8707922e5954776254aa6", null ],
     [ "getNetReactionStoichiometry", "classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9", null ],
-    [ "getNetworkReactions", "classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da", null ],
+    [ "getNetworkReactions", "classgridfire_1_1_graph_engine.html#a3b7f3ba85821165f58f168bc68f86b2d", null ],
     [ "getNetworkSpecies", "classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767", null ],
     [ "getPartitionFunction", "classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44", null ],
     [ "getScreeningModel", "classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a", null ],
-    [ "getSpeciesDestructionTimescales", "classgridfire_1_1_graph_engine.html#aef8f6bde24d27345067b71084330c7da", null ],
-    [ "getSpeciesIndex", "classgridfire_1_1_graph_engine.html#a914f6abc61805cddaebcb8f3cf470dda", null ],
-    [ "getSpeciesTimescales", "classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581", null ],
-    [ "getStoichiometryMatrixEntry", "classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152", null ],
+    [ "getSpeciesDestructionTimescales", "classgridfire_1_1_graph_engine.html#a47df5a9c448dd1ce8654df819a6cc8ff", null ],
+    [ "getSpeciesIndex", "classgridfire_1_1_graph_engine.html#a9e426e6c178dd80bd58090489d3b2be9", null ],
+    [ "getSpeciesTimescales", "classgridfire_1_1_graph_engine.html#a7dde968244f3c4934c7738445c709232", null ],
+    [ "getStoichiometryMatrixEntry", "classgridfire_1_1_graph_engine.html#ad90a2d770ebf098f0d6d5f5339961e95", null ],
     [ "involvesSpecies", "classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b", null ],
     [ "isPrecomputationEnabled", "classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f", null ],
     [ "isStale", "classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5", null ],
@@ -45,9 +44,10 @@ var classgridfire_1_1_graph_engine =
     [ "precomputeNetwork", "classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd", null ],
     [ "primeEngine", "classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e", null ],
     [ "rebuild", "classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490", null ],
-    [ "recordADTape", "classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889", null ],
+    [ "recordADTape", "classgridfire_1_1_graph_engine.html#ab29ef3225c8fcda012b10765df064b63", null ],
+    [ "recordEpsADTape", "classgridfire_1_1_graph_engine.html#a16b8cd1b0e19b4d4519596a4e22eaf5c", null ],
     [ "reserveJacobianMatrix", "classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5", null ],
-    [ "setNetworkReactions", "classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0", null ],
+    [ "setNetworkReactions", "classgridfire_1_1_graph_engine.html#a52288e2629609c8438a3c9bc3f910016", null ],
     [ "setPrecomputation", "classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1", null ],
     [ "setScreeningModel", "classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c", null ],
     [ "setUseReverseReactions", "classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197", null ],
@@ -58,7 +58,9 @@ var classgridfire_1_1_graph_engine =
     [ "m_config", "classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18", null ],
     [ "m_constants", "classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e", null ],
     [ "m_depth", "classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01", null ],
+    [ "m_epsADFun", "classgridfire_1_1_graph_engine.html#a1d5f6a3f217af7f4d0f95bdf7916b774", null ],
     [ "m_full_jacobian_sparsity_pattern", "classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06", null ],
+    [ "m_indexToSpeciesMap", "classgridfire_1_1_graph_engine.html#a8ff064c9996772281984f88ee492d04a", null ],
     [ "m_jac_work", "classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891", null ],
     [ "m_jacobianMatrix", "classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910", null ],
     [ "m_logger", "classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53", null ],
@@ -67,12 +69,13 @@ var classgridfire_1_1_graph_engine =
     [ "m_partitionFunction", "classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e", null ],
     [ "m_precomputedReactions", "classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3", null ],
     [ "m_reactionIDMap", "classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3", null ],
-    [ "m_reactions", "classgridfire_1_1_graph_engine.html#acb7c4f5108b0efeae48ad15598e808c3", null ],
+    [ "m_reactions", "classgridfire_1_1_graph_engine.html#ad3b97595871d1f62ee7f4726b601ebef", null ],
     [ "m_rhsADFun", "classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876", null ],
     [ "m_screeningModel", "classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210", null ],
     [ "m_screeningType", "classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80", null ],
     [ "m_speciesToIndexMap", "classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7", null ],
     [ "m_stoichiometryMatrix", "classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24", null ],
     [ "m_usePrecomputation", "classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de", null ],
-    [ "m_useReverseReactions", "classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc", null ]
+    [ "m_useReverseReactions", "classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc", null ],
+    [ "m_weakRateInterpolator", "classgridfire_1_1_graph_engine.html#a9ac5893030802b0b846552949e866340", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view-members.html b/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view-members.html
index 9cea4e9c..ca210048 100644
--- a/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view-members.html
+++ b/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view-members.html
@@ -105,58 +105,57 @@ $(function(){initNavTree('classgridfire_1_1_multiscale_partitioning_engine_view.
 
 <p>This is the complete list of members for <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a>, including all inherited members.</p>
 <table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#af13e764c118a6cc51847384e9c70e05b">analyzeTimescalePoolConnectivity</a>(const std::vector&lt; std::vector&lt; size_t &gt; &gt; &amp;timescale_pools, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aae0865e361dfeb23984d70409fdd9f39">buildConnectivityGraph</a>(const std::unordered_set&lt; size_t &gt; &amp;fast_reaction_indices) const</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ae3875c61dc916c0982ed122c2e272d94">buildConnectivityGraph</a>(const std::vector&lt; size_t &gt; &amp;species_pool) const</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const std::vector&lt; double &gt; &amp;Y_full, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb">calculateRHSAndEnergy</a>(const std::vector&lt; double &gt; &amp;Y_full, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ac206840057bac65b7f7738e6dfd1047a">constructCandidateGroups</a>(const std::vector&lt; std::vector&lt; size_t &gt; &gt; &amp;candidate_pools, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d">equilibrateNetwork</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho)</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a05e45017bbb772c586f483bd527004ee">analyzeTimescalePoolConnectivity</a>(const std::vector&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt; &amp;timescale_pools, const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a5d1c11f3c0883385833462dd088f6f89">buildConnectivityGraph</a>(const std::vector&lt; fourdst::atomic::Species &gt; &amp;species_pool) const</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a99f9116d5a18afcbf0e808ef111d1be8">calculateEpsDerivatives</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a87687a960f263a4e1bc035e4d0a345db">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a5c1ab19bc3394a5d29241ef02073c4cb">calculateRHSAndEnergy</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aaabaae8e33ca8a05a2aa1f374e792795">constructCandidateGroups</a>(const std::vector&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt; &amp;candidate_pools, const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a2f0c45d4e2b2f9de5d961088f3ab0a9a">equilibrateNetwork</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho)</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc">equilibrateNetwork</a>(const NetIn &amp;netIn)</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18">exportToDot</a>(const std::string &amp;filename, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#acdf5ad8765290ea2b78170235aea391d">generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_full, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7">gridfire::DynamicEngine::generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#adfa1e133c49c0ef78b374d37e90a3372">exportToDot</a>(const std::string &amp;filename, const fourdst::composition::Composition &amp;Y, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ab9f71bc9a1c0f98ec9cc1c7da00fd975">generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd">gridfire::DynamicEngine::generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1">getBaseEngine</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888">getDynamicSpecies</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e">getFastSpecies</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ac961484383e86d9712a424728e068633">getJacobianMatrixEntry</a>(int i_full, int j_full) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ad751f2c1306895ee74a61f2071ca96eb">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a586da5402750151fee5db2666785b6e4">getJacobianMatrixEntry</a>(const fourdst::atomic::Species &amp;rowSpecies, const fourdst::atomic::Species &amp;colSpecies) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a253e51d6dc7226a863a123683049af61">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aa38c367ef3c74d012ccd10521cd5a727">getSpeciesDestructionTimescales</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a91d32b7197fcb27ee697d5bfde960f3f">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a560612347bbd5b7b380e990624d01105">getSpeciesTimescales</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a510b920dea726aef859ac1f6d051807e">getStoichiometryMatrixEntry</a>(int speciesIndex, int reactionIndex) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a54ca8004fbd8d6d3ea6f67efeb5dbc8d">identifyMeanSlowestPool</a>(const std::vector&lt; std::vector&lt; size_t &gt; &gt; &amp;pools, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a14b0c7ec882b2ad2370f7aa729b9f9">getSpeciesDestructionTimescales</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a8db21995e6878f4043f3a5a45bf36d5e">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aea2c3d2ae6ddf77bd4a9b07b86f3306b">getSpeciesTimescales</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7140384baaaa0bd05ca448a0d8fec471">getStoichiometryMatrixEntry</a>(const fourdst::atomic::Species &amp;species, const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a70f4a0c4123b7f78305f64eb11beeeeb">identifyMeanSlowestPool</a>(const std::vector&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt; &amp;pools, const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46">isStale</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb">m_activeReactionIndices</a></td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8">m_activeSpeciesIndices</a></td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8">m_algebraic_species</a></td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a53862719dd73f98bc69eecde090cf655">m_algebraic_species_indices</a></td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3af2b37ce21829d9554d702cad074470">m_algebraic_abundances</a></td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8">m_algebraic_species</a></td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93">m_baseEngine</a></td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a">m_cacheStats</a></td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f">m_dynamic_species</a></td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a38b4f0373c3bd81503889650c0bb69bb">m_dynamic_species_indices</a></td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e">m_qse_abundance_cache</a></td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6">m_qse_groups</a></td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f">MultiscalePartitioningEngineView</a>(GraphEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ad4d29ee55f89384807616d1068797067">partitionByTimescale</a>(const std::vector&lt; double &gt; &amp;Y_full, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c">partitionNetwork</a>(const std::vector&lt; double &gt; &amp;Y, double T9, double rho)</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7">partitionNetwork</a>(const NetIn &amp;netIn)</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235">primeEngine</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681">QSEPartition</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf">rebuild</a>(const fourdst::composition::Composition &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#acb5fa7f03cd89b8c1b6b9ffdf3abb12e">setNetworkReactions</a>(const reaction::LogicalReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c5fcb8e3396d74359fd601554c9ffa9">solveQSEAbundances</a>(const std::vector&lt; double &gt; &amp;Y_full, double T9, double rho)</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aa55ed182301d216264daae3e6dfd8917">validateGroupsWithFluxAnalysis</a>(const std::vector&lt; QSEGroup &gt; &amp;candidate_groups, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html">gridfire::EngineView&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e">m_qse_abundance_cache</a></td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6">m_qse_groups</a></td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f">MultiscalePartitioningEngineView</a>(GraphEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6">partitionByTimescale</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c327a40d7c667043826002975baa2b4">partitionNetwork</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho)</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7">partitionNetwork</a>(const NetIn &amp;netIn)</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235">primeEngine</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681">QSEPartition</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf">rebuild</a>(const fourdst::composition::Composition &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#af99f5e4871808188d00379c1c35868fe">setNetworkReactions</a>(const reaction::ReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a40ce2c18063cd56cffd58419b9ae96bf">solveQSEAbundances</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho)</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ad94c6fa2281d9104471631c6b90f411e">validateGroupsWithFluxAnalysis</a>(const std::vector&lt; QSEGroup &gt; &amp;candidate_groups, const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html">gridfire::EngineView&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view.html b/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view.html
index b3ea792f..3aac513e 100644
--- a/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view.html
+++ b/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view.html
@@ -146,36 +146,39 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:a696f74f5135bbd62169b6577f92fee80" id="r_a696f74f5135bbd62169b6577f92fee80"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a696f74f5135bbd62169b6577f92fee80">getNetworkSpecies</a> () const override</td></tr>
 <tr class="memdesc:a696f74f5135bbd62169b6577f92fee80"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the list of species in the network.  <br /></td></tr>
 <tr class="separator:a696f74f5135bbd62169b6577f92fee80"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a716d7357e944e8394d8b8e0b5e7625eb" id="r_a716d7357e944e8394d8b8e0b5e7625eb"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a716d7357e944e8394d8b8e0b5e7625eb">calculateRHSAndEnergy</a> (const std::vector&lt; double &gt; &amp;Y_full, double T9, double rho) const override</td></tr>
-<tr class="memdesc:a716d7357e944e8394d8b8e0b5e7625eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the right-hand side (dY/dt) and energy generation.  <br /></td></tr>
-<tr class="separator:a716d7357e944e8394d8b8e0b5e7625eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acdf5ad8765290ea2b78170235aea391d" id="r_acdf5ad8765290ea2b78170235aea391d"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#acdf5ad8765290ea2b78170235aea391d">generateJacobianMatrix</a> (const std::vector&lt; double &gt; &amp;Y_full, double T9, double rho) const override</td></tr>
-<tr class="memdesc:acdf5ad8765290ea2b78170235aea391d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for the current state.  <br /></td></tr>
-<tr class="separator:acdf5ad8765290ea2b78170235aea391d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac961484383e86d9712a424728e068633" id="r_ac961484383e86d9712a424728e068633"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac961484383e86d9712a424728e068633">getJacobianMatrixEntry</a> (int i_full, int j_full) const override</td></tr>
-<tr class="memdesc:ac961484383e86d9712a424728e068633"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the previously generated Jacobian matrix.  <br /></td></tr>
-<tr class="separator:ac961484383e86d9712a424728e068633"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5c1ab19bc3394a5d29241ef02073c4cb" id="r_a5c1ab19bc3394a5d29241ef02073c4cb"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5c1ab19bc3394a5d29241ef02073c4cb">calculateRHSAndEnergy</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a5c1ab19bc3394a5d29241ef02073c4cb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the right-hand side (dY/dt) and energy generation.  <br /></td></tr>
+<tr class="separator:a5c1ab19bc3394a5d29241ef02073c4cb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a99f9116d5a18afcbf0e808ef111d1be8" id="r_a99f9116d5a18afcbf0e808ef111d1be8"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a99f9116d5a18afcbf0e808ef111d1be8">calculateEpsDerivatives</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a99f9116d5a18afcbf0e808ef111d1be8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the derivatives of the energy generation rate with respect to T and rho.  <br /></td></tr>
+<tr class="separator:a99f9116d5a18afcbf0e808ef111d1be8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab9f71bc9a1c0f98ec9cc1c7da00fd975" id="r_ab9f71bc9a1c0f98ec9cc1c7da00fd975"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab9f71bc9a1c0f98ec9cc1c7da00fd975">generateJacobianMatrix</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:ab9f71bc9a1c0f98ec9cc1c7da00fd975"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for the current state.  <br /></td></tr>
+<tr class="separator:ab9f71bc9a1c0f98ec9cc1c7da00fd975"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a586da5402750151fee5db2666785b6e4" id="r_a586da5402750151fee5db2666785b6e4"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a586da5402750151fee5db2666785b6e4">getJacobianMatrixEntry</a> (const fourdst::atomic::Species &amp;rowSpecies, const fourdst::atomic::Species &amp;colSpecies) const override</td></tr>
+<tr class="memdesc:a586da5402750151fee5db2666785b6e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the previously generated Jacobian matrix.  <br /></td></tr>
+<tr class="separator:a586da5402750151fee5db2666785b6e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:abe76a46784b1ebc8ad67a9eec40d369a" id="r_abe76a46784b1ebc8ad67a9eec40d369a"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abe76a46784b1ebc8ad67a9eec40d369a">generateStoichiometryMatrix</a> () override</td></tr>
 <tr class="memdesc:abe76a46784b1ebc8ad67a9eec40d369a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the stoichiometry matrix for the network.  <br /></td></tr>
 <tr class="separator:abe76a46784b1ebc8ad67a9eec40d369a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a510b920dea726aef859ac1f6d051807e" id="r_a510b920dea726aef859ac1f6d051807e"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a510b920dea726aef859ac1f6d051807e">getStoichiometryMatrixEntry</a> (int speciesIndex, int reactionIndex) const override</td></tr>
-<tr class="memdesc:a510b920dea726aef859ac1f6d051807e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the stoichiometry matrix.  <br /></td></tr>
-<tr class="separator:a510b920dea726aef859ac1f6d051807e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a79eb9c108d694a27ec913ed0143aa044" id="r_a79eb9c108d694a27ec913ed0143aa044"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a79eb9c108d694a27ec913ed0143aa044">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const std::vector&lt; double &gt; &amp;Y_full, double T9, double rho) const override</td></tr>
-<tr class="memdesc:a79eb9c108d694a27ec913ed0143aa044"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the molar reaction flow for a given reaction.  <br /></td></tr>
-<tr class="separator:a79eb9c108d694a27ec913ed0143aa044"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad751f2c1306895ee74a61f2071ca96eb" id="r_ad751f2c1306895ee74a61f2071ca96eb"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad751f2c1306895ee74a61f2071ca96eb">getNetworkReactions</a> () const override</td></tr>
-<tr class="memdesc:ad751f2c1306895ee74a61f2071ca96eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the set of logical reactions in the network.  <br /></td></tr>
-<tr class="separator:ad751f2c1306895ee74a61f2071ca96eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acb5fa7f03cd89b8c1b6b9ffdf3abb12e" id="r_acb5fa7f03cd89b8c1b6b9ffdf3abb12e"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#acb5fa7f03cd89b8c1b6b9ffdf3abb12e">setNetworkReactions</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;reactions) override</td></tr>
-<tr class="memdesc:acb5fa7f03cd89b8c1b6b9ffdf3abb12e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the set of logical reactions in the network.  <br /></td></tr>
-<tr class="separator:acb5fa7f03cd89b8c1b6b9ffdf3abb12e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a560612347bbd5b7b380e990624d01105" id="r_a560612347bbd5b7b380e990624d01105"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a560612347bbd5b7b380e990624d01105">getSpeciesTimescales</a> (const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
-<tr class="memdesc:a560612347bbd5b7b380e990624d01105"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes timescales for all species in the network.  <br /></td></tr>
-<tr class="separator:a560612347bbd5b7b380e990624d01105"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa38c367ef3c74d012ccd10521cd5a727" id="r_aa38c367ef3c74d012ccd10521cd5a727"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa38c367ef3c74d012ccd10521cd5a727">getSpeciesDestructionTimescales</a> (const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
-<tr class="memdesc:aa38c367ef3c74d012ccd10521cd5a727"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes destruction timescales for all species in the network.  <br /></td></tr>
-<tr class="separator:aa38c367ef3c74d012ccd10521cd5a727"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7140384baaaa0bd05ca448a0d8fec471" id="r_a7140384baaaa0bd05ca448a0d8fec471"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7140384baaaa0bd05ca448a0d8fec471">getStoichiometryMatrixEntry</a> (const fourdst::atomic::Species &amp;species, const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction) const override</td></tr>
+<tr class="memdesc:a7140384baaaa0bd05ca448a0d8fec471"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the stoichiometry matrix.  <br /></td></tr>
+<tr class="separator:a7140384baaaa0bd05ca448a0d8fec471"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a87687a960f263a4e1bc035e4d0a345db" id="r_a87687a960f263a4e1bc035e4d0a345db"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a87687a960f263a4e1bc035e4d0a345db">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a87687a960f263a4e1bc035e4d0a345db"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the molar reaction flow for a given reaction.  <br /></td></tr>
+<tr class="separator:a87687a960f263a4e1bc035e4d0a345db"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a253e51d6dc7226a863a123683049af61" id="r_a253e51d6dc7226a863a123683049af61"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a253e51d6dc7226a863a123683049af61">getNetworkReactions</a> () const override</td></tr>
+<tr class="memdesc:a253e51d6dc7226a863a123683049af61"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the set of logical reactions in the network.  <br /></td></tr>
+<tr class="separator:a253e51d6dc7226a863a123683049af61"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af99f5e4871808188d00379c1c35868fe" id="r_af99f5e4871808188d00379c1c35868fe"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af99f5e4871808188d00379c1c35868fe">setNetworkReactions</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions) override</td></tr>
+<tr class="memdesc:af99f5e4871808188d00379c1c35868fe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the set of logical reactions in the network.  <br /></td></tr>
+<tr class="separator:af99f5e4871808188d00379c1c35868fe"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aea2c3d2ae6ddf77bd4a9b07b86f3306b" id="r_aea2c3d2ae6ddf77bd4a9b07b86f3306b"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aea2c3d2ae6ddf77bd4a9b07b86f3306b">getSpeciesTimescales</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:aea2c3d2ae6ddf77bd4a9b07b86f3306b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes timescales for all species in the network.  <br /></td></tr>
+<tr class="separator:aea2c3d2ae6ddf77bd4a9b07b86f3306b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1a14b0c7ec882b2ad2370f7aa729b9f9" id="r_a1a14b0c7ec882b2ad2370f7aa729b9f9"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1a14b0c7ec882b2ad2370f7aa729b9f9">getSpeciesDestructionTimescales</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a1a14b0c7ec882b2ad2370f7aa729b9f9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes destruction timescales for all species in the network.  <br /></td></tr>
+<tr class="separator:a1a14b0c7ec882b2ad2370f7aa729b9f9"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a6bee75b5a6e508e6eebf83f0d48c50b8" id="r_a6bee75b5a6e508e6eebf83f0d48c50b8"><td class="memItemLeft" align="right" valign="top">fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6bee75b5a6e508e6eebf83f0d48c50b8">update</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn) override</td></tr>
 <tr class="memdesc:a6bee75b5a6e508e6eebf83f0d48c50b8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Updates the internal state of the engine, performing partitioning and QSE equilibration.  <br /></td></tr>
 <tr class="separator:a6bee75b5a6e508e6eebf83f0d48c50b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -191,21 +194,21 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:a22bd1f0e821ed415611d75bac67063d1" id="r_a22bd1f0e821ed415611d75bac67063d1"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a22bd1f0e821ed415611d75bac67063d1">getBaseEngine</a> () const override</td></tr>
 <tr class="memdesc:a22bd1f0e821ed415611d75bac67063d1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the base engine.  <br /></td></tr>
 <tr class="separator:a22bd1f0e821ed415611d75bac67063d1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af13e764c118a6cc51847384e9c70e05b" id="r_af13e764c118a6cc51847384e9c70e05b"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::vector&lt; size_t &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af13e764c118a6cc51847384e9c70e05b">analyzeTimescalePoolConnectivity</a> (const std::vector&lt; std::vector&lt; size_t &gt; &gt; &amp;timescale_pools, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const</td></tr>
-<tr class="memdesc:af13e764c118a6cc51847384e9c70e05b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Analyzes the connectivity of timescale pools.  <br /></td></tr>
-<tr class="separator:af13e764c118a6cc51847384e9c70e05b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7d26945df5395b9317552a3989c42d1c" id="r_a7d26945df5395b9317552a3989c42d1c"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7d26945df5395b9317552a3989c42d1c">partitionNetwork</a> (const std::vector&lt; double &gt; &amp;Y, double T9, double rho)</td></tr>
-<tr class="memdesc:a7d26945df5395b9317552a3989c42d1c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Partitions the network into dynamic and algebraic (QSE) groups based on timescales.  <br /></td></tr>
-<tr class="separator:a7d26945df5395b9317552a3989c42d1c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a05e45017bbb772c586f483bd527004ee" id="r_a05e45017bbb772c586f483bd527004ee"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a05e45017bbb772c586f483bd527004ee">analyzeTimescalePoolConnectivity</a> (const std::vector&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt; &amp;timescale_pools, const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td></tr>
+<tr class="memdesc:a05e45017bbb772c586f483bd527004ee"><td class="mdescLeft">&#160;</td><td class="mdescRight">Analyzes the connectivity of timescale pools.  <br /></td></tr>
+<tr class="separator:a05e45017bbb772c586f483bd527004ee"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3c327a40d7c667043826002975baa2b4" id="r_a3c327a40d7c667043826002975baa2b4"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3c327a40d7c667043826002975baa2b4">partitionNetwork</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho)</td></tr>
+<tr class="memdesc:a3c327a40d7c667043826002975baa2b4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Partitions the network into dynamic and algebraic (QSE) groups based on timescales.  <br /></td></tr>
+<tr class="separator:a3c327a40d7c667043826002975baa2b4"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a98b11ffe498846f5a3a72f08504346b7" id="r_a98b11ffe498846f5a3a72f08504346b7"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a98b11ffe498846f5a3a72f08504346b7">partitionNetwork</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn)</td></tr>
 <tr class="memdesc:a98b11ffe498846f5a3a72f08504346b7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Partitions the network based on timescales from a <code><a class="el" href="structgridfire_1_1_net_in.html">NetIn</a></code> struct.  <br /></td></tr>
 <tr class="separator:a98b11ffe498846f5a3a72f08504346b7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acff59a15abac30eee16e9fa7b355fb18" id="r_acff59a15abac30eee16e9fa7b355fb18"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#acff59a15abac30eee16e9fa7b355fb18">exportToDot</a> (const std::string &amp;filename, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const</td></tr>
-<tr class="memdesc:acff59a15abac30eee16e9fa7b355fb18"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exports the network to a DOT file for visualization.  <br /></td></tr>
-<tr class="separator:acff59a15abac30eee16e9fa7b355fb18"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a91d32b7197fcb27ee697d5bfde960f3f" id="r_a91d32b7197fcb27ee697d5bfde960f3f"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a91d32b7197fcb27ee697d5bfde960f3f">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
-<tr class="memdesc:a91d32b7197fcb27ee697d5bfde960f3f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the index of a species in the full network.  <br /></td></tr>
-<tr class="separator:a91d32b7197fcb27ee697d5bfde960f3f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adfa1e133c49c0ef78b374d37e90a3372" id="r_adfa1e133c49c0ef78b374d37e90a3372"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#adfa1e133c49c0ef78b374d37e90a3372">exportToDot</a> (const std::string &amp;filename, const fourdst::composition::Composition &amp;Y, double T9, double rho) const</td></tr>
+<tr class="memdesc:adfa1e133c49c0ef78b374d37e90a3372"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exports the network to a DOT file for visualization.  <br /></td></tr>
+<tr class="separator:adfa1e133c49c0ef78b374d37e90a3372"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8db21995e6878f4043f3a5a45bf36d5e" id="r_a8db21995e6878f4043f3a5a45bf36d5e"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8db21995e6878f4043f3a5a45bf36d5e">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a8db21995e6878f4043f3a5a45bf36d5e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the index of a species in the full network.  <br /></td></tr>
+<tr class="separator:a8db21995e6878f4043f3a5a45bf36d5e"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:aada497e8df74a295fdf5df7d7cdf64e0" id="r_aada497e8df74a295fdf5df7d7cdf64e0"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aada497e8df74a295fdf5df7d7cdf64e0">mapNetInToMolarAbundanceVector</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn) const override</td></tr>
 <tr class="memdesc:aada497e8df74a295fdf5df7d7cdf64e0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps a <code><a class="el" href="structgridfire_1_1_net_in.html">NetIn</a></code> struct to a molar abundance vector for the full network.  <br /></td></tr>
 <tr class="separator:aada497e8df74a295fdf5df7d7cdf64e0"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -218,15 +221,15 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:a1e04e8cb8c84b1bd033ac599accf0888" id="r_a1e04e8cb8c84b1bd033ac599accf0888"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1e04e8cb8c84b1bd033ac599accf0888">getDynamicSpecies</a> () const</td></tr>
 <tr class="memdesc:a1e04e8cb8c84b1bd033ac599accf0888"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the dynamic species in the network.  <br /></td></tr>
 <tr class="separator:a1e04e8cb8c84b1bd033ac599accf0888"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4bc879246c6fbd8633b05052858df51d" id="r_a4bc879246c6fbd8633b05052858df51d"><td class="memItemLeft" align="right" valign="top">fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4bc879246c6fbd8633b05052858df51d">equilibrateNetwork</a> (const std::vector&lt; double &gt; &amp;Y, double T9, double rho)</td></tr>
-<tr class="memdesc:a4bc879246c6fbd8633b05052858df51d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Equilibrates the network by partitioning and solving for QSE abundances.  <br /></td></tr>
-<tr class="separator:a4bc879246c6fbd8633b05052858df51d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2f0c45d4e2b2f9de5d961088f3ab0a9a" id="r_a2f0c45d4e2b2f9de5d961088f3ab0a9a"><td class="memItemLeft" align="right" valign="top">fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2f0c45d4e2b2f9de5d961088f3ab0a9a">equilibrateNetwork</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho)</td></tr>
+<tr class="memdesc:a2f0c45d4e2b2f9de5d961088f3ab0a9a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Equilibrates the network by partitioning and solving for QSE abundances.  <br /></td></tr>
+<tr class="separator:a2f0c45d4e2b2f9de5d961088f3ab0a9a"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a1b17f94386882ea1524147782b7a1ddc" id="r_a1b17f94386882ea1524147782b7a1ddc"><td class="memItemLeft" align="right" valign="top">fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1b17f94386882ea1524147782b7a1ddc">equilibrateNetwork</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn)</td></tr>
 <tr class="memdesc:a1b17f94386882ea1524147782b7a1ddc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Equilibrates the network using QSE from a <code><a class="el" href="structgridfire_1_1_net_in.html">NetIn</a></code> struct.  <br /></td></tr>
 <tr class="separator:a1b17f94386882ea1524147782b7a1ddc"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="inherit_header pub_methods_classgridfire_1_1_dynamic_engine"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1_dynamic_engine')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td></tr>
-<tr class="memitem:a818d942efa843959393e4eed3263b7e7 inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a818d942efa843959393e4eed3263b7e7"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7">generateJacobianMatrix</a> (const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const <a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">SparsityPattern</a> &amp;sparsityPattern) const</td></tr>
-<tr class="separator:a818d942efa843959393e4eed3263b7e7 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a11d602a708af4629f51873b17f7b8dbd inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a11d602a708af4629f51873b17f7b8dbd"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd">generateJacobianMatrix</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho, const <a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">SparsityPattern</a> &amp;sparsityPattern) const</td></tr>
+<tr class="separator:a11d602a708af4629f51873b17f7b8dbd inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a04317b66ef14d519264bc30ee69f5bf9 inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a04317b66ef14d519264bc30ee69f5bf9"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">getDepth</a> () const</td></tr>
 <tr class="memdesc:a04317b66ef14d519264bc30ee69f5bf9 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the depth of the network.  <br /></td></tr>
 <tr class="separator:a04317b66ef14d519264bc30ee69f5bf9 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -250,27 +253,24 @@ Private Types</h2></td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
 Private Member Functions</h2></td></tr>
-<tr class="memitem:ad4d29ee55f89384807616d1068797067" id="r_ad4d29ee55f89384807616d1068797067"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::vector&lt; size_t &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad4d29ee55f89384807616d1068797067">partitionByTimescale</a> (const std::vector&lt; double &gt; &amp;Y_full, double T9, double rho) const</td></tr>
-<tr class="memdesc:ad4d29ee55f89384807616d1068797067"><td class="mdescLeft">&#160;</td><td class="mdescRight">Partitions the network by timescale.  <br /></td></tr>
-<tr class="separator:ad4d29ee55f89384807616d1068797067"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aae0865e361dfeb23984d70409fdd9f39" id="r_aae0865e361dfeb23984d70409fdd9f39"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; size_t, std::vector&lt; size_t &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aae0865e361dfeb23984d70409fdd9f39">buildConnectivityGraph</a> (const std::unordered_set&lt; size_t &gt; &amp;fast_reaction_indices) const</td></tr>
-<tr class="memdesc:aae0865e361dfeb23984d70409fdd9f39"><td class="mdescLeft">&#160;</td><td class="mdescRight">Builds a connectivity graph from a set of fast reaction indices.  <br /></td></tr>
-<tr class="separator:aae0865e361dfeb23984d70409fdd9f39"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa55ed182301d216264daae3e6dfd8917" id="r_aa55ed182301d216264daae3e6dfd8917"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">QSEGroup</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa55ed182301d216264daae3e6dfd8917">validateGroupsWithFluxAnalysis</a> (const std::vector&lt; <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">QSEGroup</a> &gt; &amp;candidate_groups, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const</td></tr>
-<tr class="memdesc:aa55ed182301d216264daae3e6dfd8917"><td class="mdescLeft">&#160;</td><td class="mdescRight">Validates candidate QSE groups using flux analysis.  <br /></td></tr>
-<tr class="separator:aa55ed182301d216264daae3e6dfd8917"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3c5fcb8e3396d74359fd601554c9ffa9" id="r_a3c5fcb8e3396d74359fd601554c9ffa9"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3c5fcb8e3396d74359fd601554c9ffa9">solveQSEAbundances</a> (const std::vector&lt; double &gt; &amp;Y_full, double T9, double rho)</td></tr>
-<tr class="memdesc:a3c5fcb8e3396d74359fd601554c9ffa9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solves for the QSE abundances of the algebraic species in a given state.  <br /></td></tr>
-<tr class="separator:a3c5fcb8e3396d74359fd601554c9ffa9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a54ca8004fbd8d6d3ea6f67efeb5dbc8d" id="r_a54ca8004fbd8d6d3ea6f67efeb5dbc8d"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a54ca8004fbd8d6d3ea6f67efeb5dbc8d">identifyMeanSlowestPool</a> (const std::vector&lt; std::vector&lt; size_t &gt; &gt; &amp;pools, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const</td></tr>
-<tr class="memdesc:a54ca8004fbd8d6d3ea6f67efeb5dbc8d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Identifies the pool with the slowest mean timescale.  <br /></td></tr>
-<tr class="separator:a54ca8004fbd8d6d3ea6f67efeb5dbc8d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae3875c61dc916c0982ed122c2e272d94" id="r_ae3875c61dc916c0982ed122c2e272d94"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; size_t, std::vector&lt; size_t &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae3875c61dc916c0982ed122c2e272d94">buildConnectivityGraph</a> (const std::vector&lt; size_t &gt; &amp;species_pool) const</td></tr>
-<tr class="memdesc:ae3875c61dc916c0982ed122c2e272d94"><td class="mdescLeft">&#160;</td><td class="mdescRight">Builds a connectivity graph from a species pool.  <br /></td></tr>
-<tr class="separator:ae3875c61dc916c0982ed122c2e272d94"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac206840057bac65b7f7738e6dfd1047a" id="r_ac206840057bac65b7f7738e6dfd1047a"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">QSEGroup</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac206840057bac65b7f7738e6dfd1047a">constructCandidateGroups</a> (const std::vector&lt; std::vector&lt; size_t &gt; &gt; &amp;candidate_pools, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const</td></tr>
-<tr class="memdesc:ac206840057bac65b7f7738e6dfd1047a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs candidate QSE groups from connected timescale pools.  <br /></td></tr>
-<tr class="separator:ac206840057bac65b7f7738e6dfd1047a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6" id="r_a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6">partitionByTimescale</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td></tr>
+<tr class="memdesc:a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Partitions the network by timescale.  <br /></td></tr>
+<tr class="separator:a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad94c6fa2281d9104471631c6b90f411e" id="r_ad94c6fa2281d9104471631c6b90f411e"><td class="memItemLeft" align="right" valign="top">std::pair&lt; std::vector&lt; <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">MultiscalePartitioningEngineView::QSEGroup</a> &gt;, std::vector&lt; <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">MultiscalePartitioningEngineView</a> ::QSEGroup &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad94c6fa2281d9104471631c6b90f411e">validateGroupsWithFluxAnalysis</a> (const std::vector&lt; <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">QSEGroup</a> &gt; &amp;candidate_groups, const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td></tr>
+<tr class="memdesc:ad94c6fa2281d9104471631c6b90f411e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Validates candidate QSE groups using flux analysis.  <br /></td></tr>
+<tr class="separator:ad94c6fa2281d9104471631c6b90f411e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a40ce2c18063cd56cffd58419b9ae96bf" id="r_a40ce2c18063cd56cffd58419b9ae96bf"><td class="memItemLeft" align="right" valign="top">fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a40ce2c18063cd56cffd58419b9ae96bf">solveQSEAbundances</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho)</td></tr>
+<tr class="memdesc:a40ce2c18063cd56cffd58419b9ae96bf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solves for the QSE abundances of the algebraic species in a given state.  <br /></td></tr>
+<tr class="separator:a40ce2c18063cd56cffd58419b9ae96bf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a70f4a0c4123b7f78305f64eb11beeeeb" id="r_a70f4a0c4123b7f78305f64eb11beeeeb"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a70f4a0c4123b7f78305f64eb11beeeeb">identifyMeanSlowestPool</a> (const std::vector&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt; &amp;pools, const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td></tr>
+<tr class="memdesc:a70f4a0c4123b7f78305f64eb11beeeeb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Identifies the pool with the slowest mean timescale.  <br /></td></tr>
+<tr class="separator:a70f4a0c4123b7f78305f64eb11beeeeb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5d1c11f3c0883385833462dd088f6f89" id="r_a5d1c11f3c0883385833462dd088f6f89"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, std::vector&lt; fourdst::atomic::Species &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5d1c11f3c0883385833462dd088f6f89">buildConnectivityGraph</a> (const std::vector&lt; fourdst::atomic::Species &gt; &amp;species_pool) const</td></tr>
+<tr class="memdesc:a5d1c11f3c0883385833462dd088f6f89"><td class="mdescLeft">&#160;</td><td class="mdescRight">Builds a connectivity graph from a species pool.  <br /></td></tr>
+<tr class="separator:a5d1c11f3c0883385833462dd088f6f89"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aaabaae8e33ca8a05a2aa1f374e792795" id="r_aaabaae8e33ca8a05a2aa1f374e792795"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">QSEGroup</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aaabaae8e33ca8a05a2aa1f374e792795">constructCandidateGroups</a> (const std::vector&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt; &amp;candidate_pools, const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td></tr>
+<tr class="memdesc:aaabaae8e33ca8a05a2aa1f374e792795"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs candidate QSE groups from connected timescale pools.  <br /></td></tr>
+<tr class="separator:aaabaae8e33ca8a05a2aa1f374e792795"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
 Private Attributes</h2></td></tr>
@@ -286,15 +286,12 @@ Private Attributes</h2></td></tr>
 <tr class="memitem:aec6126b5c4a397d090790d7b75f9f70f" id="r_aec6126b5c4a397d090790d7b75f9f70f"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aec6126b5c4a397d090790d7b75f9f70f">m_dynamic_species</a></td></tr>
 <tr class="memdesc:aec6126b5c4a397d090790d7b75f9f70f"><td class="mdescLeft">&#160;</td><td class="mdescRight">The simplified set of species presented to the solver (the "slow" species).  <br /></td></tr>
 <tr class="separator:aec6126b5c4a397d090790d7b75f9f70f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a38b4f0373c3bd81503889650c0bb69bb" id="r_a38b4f0373c3bd81503889650c0bb69bb"><td class="memItemLeft" align="right" valign="top">std::vector&lt; size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a38b4f0373c3bd81503889650c0bb69bb">m_dynamic_species_indices</a></td></tr>
-<tr class="memdesc:a38b4f0373c3bd81503889650c0bb69bb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Indices mapping the dynamic species back to the base engine's full species list.  <br /></td></tr>
-<tr class="separator:a38b4f0373c3bd81503889650c0bb69bb"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a4656c05b8235dbf4ec698b03a716a8c8" id="r_a4656c05b8235dbf4ec698b03a716a8c8"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4656c05b8235dbf4ec698b03a716a8c8">m_algebraic_species</a></td></tr>
 <tr class="memdesc:a4656c05b8235dbf4ec698b03a716a8c8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Species that are treated as algebraic (in QSE) in the QSE groups.  <br /></td></tr>
 <tr class="separator:a4656c05b8235dbf4ec698b03a716a8c8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a53862719dd73f98bc69eecde090cf655" id="r_a53862719dd73f98bc69eecde090cf655"><td class="memItemLeft" align="right" valign="top">std::vector&lt; size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a53862719dd73f98bc69eecde090cf655">m_algebraic_species_indices</a></td></tr>
-<tr class="memdesc:a53862719dd73f98bc69eecde090cf655"><td class="mdescLeft">&#160;</td><td class="mdescRight">Indices of algebraic species in the full network.  <br /></td></tr>
-<tr class="separator:a53862719dd73f98bc69eecde090cf655"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3af2b37ce21829d9554d702cad074470" id="r_a3af2b37ce21829d9554d702cad074470"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3af2b37ce21829d9554d702cad074470">m_algebraic_abundances</a></td></tr>
+<tr class="memdesc:a3af2b37ce21829d9554d702cad074470"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map from species to their calculated abundances in the QSE state.  <br /></td></tr>
+<tr class="separator:a3af2b37ce21829d9554d702cad074470"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a57d97b11e80fa78ab5f509fce1f156b8" id="r_a57d97b11e80fa78ab5f509fce1f156b8"><td class="memItemLeft" align="right" valign="top">std::vector&lt; size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a57d97b11e80fa78ab5f509fce1f156b8">m_activeSpeciesIndices</a></td></tr>
 <tr class="memdesc:a57d97b11e80fa78ab5f509fce1f156b8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Indices of all species considered active in the current partition (dynamic + algebraic).  <br /></td></tr>
 <tr class="separator:a57d97b11e80fa78ab5f509fce1f156b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -311,7 +308,7 @@ Private Attributes</h2></td></tr>
 <a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
 <div class="textblock"><p>An engine view that partitions the reaction network into multiple groups based on timescales. </p>
 <dl class="section user"><dt>Purpose</dt><dd>This class is designed to accelerate the integration of stiff nuclear reaction networks. It identifies species that react on very short timescales ("fast" species) and treats them as being in Quasi-Steady-State Equilibrium (QSE). Their abundances are solved for algebraically, removing their stiff differential equations from the system. The remaining "slow" or "dynamic" species are integrated normally. This significantly improves the stability and performance of the solver.</dd></dl>
-<dl class="section user"><dt>How</dt><dd>The core logic resides in the <code><a class="el" href="#a7d26945df5395b9317552a3989c42d1c" title="Partitions the network into dynamic and algebraic (QSE) groups based on timescales.">partitionNetwork()</a></code> and <code><a class="el" href="#a4bc879246c6fbd8633b05052858df51d" title="Equilibrates the network by partitioning and solving for QSE abundances.">equilibrateNetwork()</a></code> methods. The partitioning process involves:<ol type="1">
+<dl class="section user"><dt>How</dt><dd>The core logic resides in the <code><a class="el" href="#a3c327a40d7c667043826002975baa2b4" title="Partitions the network into dynamic and algebraic (QSE) groups based on timescales.">partitionNetwork()</a></code> and <code><a class="el" href="#a2f0c45d4e2b2f9de5d961088f3ab0a9a" title="Equilibrates the network by partitioning and solving for QSE abundances.">equilibrateNetwork()</a></code> methods. The partitioning process involves:<ol type="1">
 <li><b>Timescale Analysis:</b> Using <code>getSpeciesDestructionTimescales</code> from the base engine, all species are sorted by their characteristic timescales.</li>
 <li><b>Gap Detection:</b> The sorted list of timescales is scanned for large gaps (e.g., several orders of magnitude) to create distinct "timescale pools".</li>
 <li><b>Connectivity Analysis:</b> Each pool is analyzed for internal reaction connectivity to form cohesive groups.</li>
@@ -335,9 +332,9 @@ Private Attributes</h2></td></tr>
 <div class="line"><span class="comment">//    The integrator will call calculateRHSAndEnergy, etc. on the multiscaleEngine.</span></div>
 <div class="line"><span class="keyword">auto</span> Y_initial = multiscaleEngine.mapNetInToMolarAbundanceVector({equilibratedComp, ...});</div>
 <div class="line"><span class="keyword">auto</span> derivatives = multiscaleEngine.calculateRHSAndEnergy(Y_initial, T9, rho);</div>
-<div class="ttc" id="aclassgridfire_1_1_graph_engine_html"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></div><div class="ttdoc">A reaction network engine that uses a graph-based representation.</div><div class="ttdef"><b>Definition</b> engine_graph.h:100</div></div>
-<div class="ttc" id="aclassgridfire_1_1_multiscale_partitioning_engine_view_html"><div class="ttname"><a href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></div><div class="ttdoc">An engine view that partitions the reaction network into multiple groups based on timescales.</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:182</div></div>
-<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> network.h:53</div></div>
+<div class="ttc" id="aclassgridfire_1_1_graph_engine_html"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></div><div class="ttdoc">A reaction network engine that uses a graph-based representation.</div><div class="ttdef"><b>Definition</b> engine_graph.h:97</div></div>
+<div class="ttc" id="aclassgridfire_1_1_multiscale_partitioning_engine_view_html"><div class="ttname"><a href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></div><div class="ttdoc">An engine view that partitions the reaction network into multiple groups based on timescales.</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:180</div></div>
+<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> network.h:51</div></div>
 </div><!-- fragment --></dd></dl>
 <p>&lt;DynamicEngine&gt; </p>
 </div><h2 class="groupheader">Member Typedef Documentation</h2>
@@ -401,21 +398,21 @@ Private Attributes</h2></td></tr>
 </div>
 </div>
 <h2 class="groupheader">Member Function Documentation</h2>
-<a id="af13e764c118a6cc51847384e9c70e05b" name="af13e764c118a6cc51847384e9c70e05b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af13e764c118a6cc51847384e9c70e05b">&#9670;&#160;</a></span>analyzeTimescalePoolConnectivity()</h2>
+<a id="a05e45017bbb772c586f483bd527004ee" name="a05e45017bbb772c586f483bd527004ee"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a05e45017bbb772c586f483bd527004ee">&#9670;&#160;</a></span>analyzeTimescalePoolConnectivity()</h2>
 
 <div class="memitem">
 <div class="memproto">
       <table class="memname">
         <tr>
-          <td class="memname">std::vector&lt; std::vector&lt; size_t &gt; &gt; gridfire::MultiscalePartitioningEngineView::analyzeTimescalePoolConnectivity </td>
+          <td class="memname">std::vector&lt; std::vector&lt; Species &gt; &gt; gridfire::MultiscalePartitioningEngineView::analyzeTimescalePoolConnectivity </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; std::vector&lt; size_t &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>timescale_pools</em></span>, </td>
+          <td class="paramtype">const std::vector&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>timescale_pools</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -434,7 +431,7 @@ Private Attributes</h2></td></tr>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
     <tr><td class="paramname">timescale_pools</td><td>A vector of vectors of species indices, where each inner vector represents a timescale pool. </td></tr>
-    <tr><td class="paramname">Y</td><td>Vector of current molar abundances for the full network. </td></tr>
+    <tr><td class="paramname">comp</td><td>Vector of current molar abundances for the full network. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -446,8 +443,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="aae0865e361dfeb23984d70409fdd9f39" name="aae0865e361dfeb23984d70409fdd9f39"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aae0865e361dfeb23984d70409fdd9f39">&#9670;&#160;</a></span>buildConnectivityGraph() <span class="overload">[1/2]</span></h2>
+<a id="a5d1c11f3c0883385833462dd088f6f89" name="a5d1c11f3c0883385833462dd088f6f89"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5d1c11f3c0883385833462dd088f6f89">&#9670;&#160;</a></span>buildConnectivityGraph()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -456,45 +453,9 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::unordered_map&lt; size_t, std::vector&lt; size_t &gt; &gt; gridfire::MultiscalePartitioningEngineView::buildConnectivityGraph </td>
+          <td class="memname">std::unordered_map&lt; Species, std::vector&lt; Species &gt; &gt; gridfire::MultiscalePartitioningEngineView::buildConnectivityGraph </td>
           <td>(</td>
-          <td class="paramtype">const std::unordered_set&lt; size_t &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>fast_reaction_indices</em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Builds a connectivity graph from a set of fast reaction indices. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">fast_reaction_indices</td><td>A set of indices for reactions considered "fast". </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>An unordered map representing the adjacency list of the connectivity graph, where keys are species indices and values are vectors of connected species indices.</dd></dl>
-<dl class="section user"><dt>Purpose</dt><dd>To represent the reaction pathways among a subset of reactions.</dd></dl>
-<dl class="section user"><dt>How</dt><dd>It iterates through the specified fast reactions. For each reaction, it creates a two-way edge in the graph between every reactant and every product, signifying that mass can flow between them. </dd></dl>
-
-</div>
-</div>
-<a id="ae3875c61dc916c0982ed122c2e272d94" name="ae3875c61dc916c0982ed122c2e272d94"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae3875c61dc916c0982ed122c2e272d94">&#9670;&#160;</a></span>buildConnectivityGraph() <span class="overload">[2/2]</span></h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::unordered_map&lt; size_t, std::vector&lt; size_t &gt; &gt; gridfire::MultiscalePartitioningEngineView::buildConnectivityGraph </td>
-          <td>(</td>
-          <td class="paramtype">const std::vector&lt; size_t &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>species_pool</em></span></td><td>)</td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>species_pool</em></span></td><td>)</td>
           <td> const</td>
         </tr>
       </table>
@@ -518,8 +479,56 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a79eb9c108d694a27ec913ed0143aa044" name="a79eb9c108d694a27ec913ed0143aa044"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a79eb9c108d694a27ec913ed0143aa044">&#9670;&#160;</a></span>calculateMolarReactionFlow()</h2>
+<a id="a99f9116d5a18afcbf0e808ef111d1be8" name="a99f9116d5a18afcbf0e808ef111d1be8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a99f9116d5a18afcbf0e808ef111d1be8">&#9670;&#160;</a></span>calculateEpsDerivatives()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a> gridfire::MultiscalePartitioningEngineView::calculateEpsDerivatives </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculate the derivatives of the energy generation rate with respect to T and rho. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a> containing dEps/dT and dEps/dRho.</dd></dl>
+<p>This method computes the partial derivatives of the specific nuclear energy generation rate with respect to temperature and density for the current state. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a264bd5a8891c8c5f0dff32867effe547">gridfire::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a87687a960f263a4e1bc035e4d0a345db" name="a87687a960f263a4e1bc035e4d0a345db"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a87687a960f263a4e1bc035e4d0a345db">&#9670;&#160;</a></span>calculateMolarReactionFlow()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -535,7 +544,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_full</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -559,7 +568,7 @@ Private Attributes</h2></td></tr>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
     <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the flow. </td></tr>
-    <tr><td class="paramname">Y_full</td><td>Vector of current molar abundances for the full network. </td></tr>
+    <tr><td class="paramname">comp</td><td>The current composition. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -576,12 +585,12 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a39cf5b738eea0a275bf8c0eb5789fab3">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="a716d7357e944e8394d8b8e0b5e7625eb" name="a716d7357e944e8394d8b8e0b5e7625eb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a716d7357e944e8394d8b8e0b5e7625eb">&#9670;&#160;</a></span>calculateRHSAndEnergy()</h2>
+<a id="a5c1ab19bc3394a5d29241ef02073c4cb" name="a5c1ab19bc3394a5d29241ef02073c4cb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5c1ab19bc3394a5d29241ef02073c4cb">&#9670;&#160;</a></span>calculateRHSAndEnergy()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -592,7 +601,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt; gridfire::MultiscalePartitioningEngineView::calculateRHSAndEnergy </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_full</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -615,7 +624,7 @@ Private Attributes</h2></td></tr>
 <p>Calculates the right-hand side (dY/dt) and energy generation. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y_full</td><td>Vector of current molar abundances for all species in the base engine. </td></tr>
+    <tr><td class="paramname">comp</td><td>The current composition. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -624,7 +633,7 @@ Private Attributes</h2></td></tr>
 <dl class="section return"><dt>Returns</dt><dd>A <code>std::expected</code> containing <code><a class="el" href="structgridfire_1_1_step_derivatives.html" title="Structure holding derivatives and energy generation for a network step.">StepDerivatives</a>&lt;double&gt;</code> on success, or a <code>StaleEngineError</code> if the engine's QSE cache does not contain a solution for the given state.</dd></dl>
 <dl class="section user"><dt>Purpose</dt><dd>To compute the time derivatives for the ODE solver. This implementation modifies the derivatives from the base engine to enforce the QSE condition.</dd></dl>
 <dl class="section user"><dt>How</dt><dd>It first performs a lookup in the QSE abundance cache (<code>m_qse_abundance_cache</code>). If a cache hit occurs, it calls the base engine's <code>calculateRHSAndEnergy</code>. It then manually sets the time derivatives (<code>dydt</code>) of all identified algebraic species to zero, effectively removing their differential equations from the system being solved.</dd></dl>
-<dl class="section pre"><dt>Precondition</dt><dd>The engine must have been updated via <code><a class="el" href="#a6bee75b5a6e508e6eebf83f0d48c50b8" title="Updates the internal state of the engine, performing partitioning and QSE equilibration.">update()</a></code> or <code><a class="el" href="#a4bc879246c6fbd8633b05052858df51d" title="Equilibrates the network by partitioning and solving for QSE abundances.">equilibrateNetwork()</a></code> for the current thermodynamic conditions, so that a valid entry exists in the QSE cache. </dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>The engine must have been updated via <code><a class="el" href="#a6bee75b5a6e508e6eebf83f0d48c50b8" title="Updates the internal state of the engine, performing partitioning and QSE equilibration.">update()</a></code> or <code><a class="el" href="#a2f0c45d4e2b2f9de5d961088f3ab0a9a" title="Equilibrates the network by partitioning and solving for QSE abundances.">equilibrateNetwork()</a></code> for the current thermodynamic conditions, so that a valid entry exists in the QSE cache. </dd></dl>
 <dl class="section post"><dt>Postcondition</dt><dd>The returned derivatives will have <code>dydt=0</code> for all algebraic species.</dd></dl>
 <dl class="exception"><dt>Exceptions</dt><dd>
   <table class="exception">
@@ -633,12 +642,12 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb">gridfire::Engine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740">gridfire::Engine</a>.</p>
 
 </div>
 </div>
-<a id="ac206840057bac65b7f7738e6dfd1047a" name="ac206840057bac65b7f7738e6dfd1047a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac206840057bac65b7f7738e6dfd1047a">&#9670;&#160;</a></span>constructCandidateGroups()</h2>
+<a id="aaabaae8e33ca8a05a2aa1f374e792795" name="aaabaae8e33ca8a05a2aa1f374e792795"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaabaae8e33ca8a05a2aa1f374e792795">&#9670;&#160;</a></span>constructCandidateGroups()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -649,12 +658,12 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">std::vector&lt; <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">MultiscalePartitioningEngineView::QSEGroup</a> &gt; gridfire::MultiscalePartitioningEngineView::constructCandidateGroups </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; std::vector&lt; size_t &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>candidate_pools</em></span>, </td>
+          <td class="paramtype">const std::vector&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>candidate_pools</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -678,7 +687,7 @@ Private Attributes</h2></td></tr>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
     <tr><td class="paramname">candidate_pools</td><td>A vector of vectors of species indices, where each inner vector represents a connected pool of species with similar fast timescales. </td></tr>
-    <tr><td class="paramname">Y</td><td>Vector of current molar abundances. </td></tr>
+    <tr><td class="paramname">comp</td><td>Vector of current molar abundances. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -689,10 +698,51 @@ Private Attributes</h2></td></tr>
 <dl class="section pre"><dt>Precondition</dt><dd>The <code>candidate_pools</code> should be connected components from <code>analyzeTimescalePoolConnectivity</code>. </dd></dl>
 <dl class="section post"><dt>Postcondition</dt><dd>A list of candidate <code><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html" title="Struct representing a QSE group.">QSEGroup</a></code> objects is returned. </dd></dl>
 
+</div>
+</div>
+<a id="a2f0c45d4e2b2f9de5d961088f3ab0a9a" name="a2f0c45d4e2b2f9de5d961088f3ab0a9a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2f0c45d4e2b2f9de5d961088f3ab0a9a">&#9670;&#160;</a></span>equilibrateNetwork() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::composition::Composition gridfire::MultiscalePartitioningEngineView::equilibrateNetwork </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Equilibrates the network by partitioning and solving for QSE abundances. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Vector of current molar abundances for the full network. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A new composition object with the equilibrated abundances.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>A convenience method to run the full QSE analysis and get an equilibrated composition object as a result.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It first calls <code><a class="el" href="#a3c327a40d7c667043826002975baa2b4" title="Partitions the network into dynamic and algebraic (QSE) groups based on timescales.">partitionNetwork()</a></code> with the given state to define the QSE groups. Then, it calls <code><a class="el" href="#a40ce2c18063cd56cffd58419b9ae96bf" title="Solves for the QSE abundances of the algebraic species in a given state.">solveQSEAbundances()</a></code> to compute the new equilibrium abundances for the algebraic species. Finally, it packs the resulting full abundance vector into a new <code>fourdst::composition::Composition</code> object and returns it.</dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>The input state (Y, T9, rho) must be a valid physical state. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The engine's internal partition is updated. A new composition object is returned. </dd></dl>
+
 </div>
 </div>
 <a id="a1b17f94386882ea1524147782b7a1ddc" name="a1b17f94386882ea1524147782b7a1ddc"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1b17f94386882ea1524147782b7a1ddc">&#9670;&#160;</a></span>equilibrateNetwork() <span class="overload">[1/2]</span></h2>
+<h2 class="memtitle"><span class="permalink"><a href="#a1b17f94386882ea1524147782b7a1ddc">&#9670;&#160;</a></span>equilibrateNetwork() <span class="overload">[2/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -719,49 +769,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a4bc879246c6fbd8633b05052858df51d" name="a4bc879246c6fbd8633b05052858df51d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4bc879246c6fbd8633b05052858df51d">&#9670;&#160;</a></span>equilibrateNetwork() <span class="overload">[2/2]</span></h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">fourdst::composition::Composition gridfire::MultiscalePartitioningEngineView::equilibrateNetwork </td>
-          <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;)</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Equilibrates the network by partitioning and solving for QSE abundances. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">Y</td><td>Vector of current molar abundances for the full network. </td></tr>
-    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
-    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A new composition object with the equilibrated abundances.</dd></dl>
-<dl class="section user"><dt>Purpose</dt><dd>A convenience method to run the full QSE analysis and get an equilibrated composition object as a result.</dd></dl>
-<dl class="section user"><dt>How</dt><dd>It first calls <code><a class="el" href="#a7d26945df5395b9317552a3989c42d1c" title="Partitions the network into dynamic and algebraic (QSE) groups based on timescales.">partitionNetwork()</a></code> with the given state to define the QSE groups. Then, it calls <code><a class="el" href="#a3c5fcb8e3396d74359fd601554c9ffa9" title="Solves for the QSE abundances of the algebraic species in a given state.">solveQSEAbundances()</a></code> to compute the new equilibrium abundances for the algebraic species. Finally, it packs the resulting full abundance vector into a new <code>fourdst::composition::Composition</code> object and returns it.</dd></dl>
-<dl class="section pre"><dt>Precondition</dt><dd>The input state (Y, T9, rho) must be a valid physical state. </dd></dl>
-<dl class="section post"><dt>Postcondition</dt><dd>The engine's internal partition is updated. A new composition object is returned. </dd></dl>
-
-</div>
-</div>
-<a id="acff59a15abac30eee16e9fa7b355fb18" name="acff59a15abac30eee16e9fa7b355fb18"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acff59a15abac30eee16e9fa7b355fb18">&#9670;&#160;</a></span>exportToDot()</h2>
+<a id="adfa1e133c49c0ef78b374d37e90a3372" name="adfa1e133c49c0ef78b374d37e90a3372"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adfa1e133c49c0ef78b374d37e90a3372">&#9670;&#160;</a></span>exportToDot()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -774,17 +783,17 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -804,8 +813,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="acdf5ad8765290ea2b78170235aea391d" name="acdf5ad8765290ea2b78170235aea391d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acdf5ad8765290ea2b78170235aea391d">&#9670;&#160;</a></span>generateJacobianMatrix()</h2>
+<a id="ab9f71bc9a1c0f98ec9cc1c7da00fd975" name="ab9f71bc9a1c0f98ec9cc1c7da00fd975"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab9f71bc9a1c0f98ec9cc1c7da00fd975">&#9670;&#160;</a></span>generateJacobianMatrix()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -816,7 +825,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">void gridfire::MultiscalePartitioningEngineView::generateJacobianMatrix </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_full</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -839,7 +848,7 @@ Private Attributes</h2></td></tr>
 <p>Generates the Jacobian matrix for the current state. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y_full</td><td>Vector of current molar abundances. </td></tr>
+    <tr><td class="paramname">comp</td><td>The current composition. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3.</td></tr>
   </table>
@@ -856,7 +865,7 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a21d15531309456ee83f7675251e7a1bf">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -948,7 +957,7 @@ Private Attributes</h2></td></tr>
 <dl class="section return"><dt>Returns</dt><dd>A const reference to the vector of species identified as "dynamic" or "slow".</dd></dl>
 <dl class="section user"><dt>Purpose</dt><dd>To allow external queries of the partitioning results.</dd></dl>
 <dl class="section user"><dt>How</dt><dd>It returns a const reference to the <code>m_dynamic_species</code> member vector.</dd></dl>
-<dl class="section pre"><dt>Precondition</dt><dd><code><a class="el" href="#a7d26945df5395b9317552a3989c42d1c" title="Partitions the network into dynamic and algebraic (QSE) groups based on timescales.">partitionNetwork()</a></code> must have been called. </dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd><code><a class="el" href="#a3c327a40d7c667043826002975baa2b4" title="Partitions the network into dynamic and algebraic (QSE) groups based on timescales.">partitionNetwork()</a></code> must have been called. </dd></dl>
 
 </div>
 </div>
@@ -979,12 +988,12 @@ Private Attributes</h2></td></tr>
 <dl class="section return"><dt>Returns</dt><dd>A vector of species identified as "fast" or "algebraic" by the partitioning.</dd></dl>
 <dl class="section user"><dt>Purpose</dt><dd>To allow external queries of the partitioning results.</dd></dl>
 <dl class="section user"><dt>How</dt><dd>It returns a copy of the <code>m_algebraic_species</code> member vector.</dd></dl>
-<dl class="section pre"><dt>Precondition</dt><dd><code><a class="el" href="#a7d26945df5395b9317552a3989c42d1c" title="Partitions the network into dynamic and algebraic (QSE) groups based on timescales.">partitionNetwork()</a></code> must have been called. </dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd><code><a class="el" href="#a3c327a40d7c667043826002975baa2b4" title="Partitions the network into dynamic and algebraic (QSE) groups based on timescales.">partitionNetwork()</a></code> must have been called. </dd></dl>
 
 </div>
 </div>
-<a id="ac961484383e86d9712a424728e068633" name="ac961484383e86d9712a424728e068633"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac961484383e86d9712a424728e068633">&#9670;&#160;</a></span>getJacobianMatrixEntry()</h2>
+<a id="a586da5402750151fee5db2666785b6e4" name="a586da5402750151fee5db2666785b6e4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a586da5402750151fee5db2666785b6e4">&#9670;&#160;</a></span>getJacobianMatrixEntry()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -995,12 +1004,12 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">double gridfire::MultiscalePartitioningEngineView::getJacobianMatrixEntry </td>
           <td>(</td>
-          <td class="paramtype">int</td>          <td class="paramname"><span class="paramname"><em>i_full</em></span>, </td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>rowSpecies</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">int</td>          <td class="paramname"><span class="paramname"><em>j_full</em></span>&#160;) const</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>colSpecies</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -1013,22 +1022,22 @@ Private Attributes</h2></td></tr>
 <p>Gets an entry from the previously generated Jacobian matrix. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">i_full</td><td>Row index (species index) in the full network. </td></tr>
-    <tr><td class="paramname">j_full</td><td>Column index (species index) in the full network. </td></tr>
+    <tr><td class="paramname">rowSpecies</td><td>Species corresponding to the row index (i_full). </td></tr>
+    <tr><td class="paramname">colSpecies</td><td>Species corresponding to the column index (j_full). </td></tr>
   </table>
   </dd>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>Value of the Jacobian matrix at (i_full, j_full).</dd></dl>
 <dl class="section user"><dt>Purpose</dt><dd>To provide Jacobian entries to an implicit solver.</dd></dl>
 <dl class="section user"><dt>How</dt><dd>This method directly delegates to the base engine's <code>getJacobianMatrixEntry</code>. It does not currently modify the Jacobian to reflect the QSE algebraic constraints, as these are handled by setting <code>dY/dt = 0</code> in <code>calculateRHSAndEnergy</code>.</dd></dl>
-<dl class="section pre"><dt>Precondition</dt><dd><code><a class="el" href="#acdf5ad8765290ea2b78170235aea391d" title="Generates the Jacobian matrix for the current state.">generateJacobianMatrix()</a></code> must have been called for the current state. </dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd><code><a class="el" href="#ab9f71bc9a1c0f98ec9cc1c7da00fd975" title="Generates the Jacobian matrix for the current state.">generateJacobianMatrix()</a></code> must have been called for the current state. </dd></dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a88dbf350dc0ea3e2b64d825f489e0d60">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="ad751f2c1306895ee74a61f2071ca96eb" name="ad751f2c1306895ee74a61f2071ca96eb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad751f2c1306895ee74a61f2071ca96eb">&#9670;&#160;</a></span>getNetworkReactions()</h2>
+<a id="a253e51d6dc7226a863a123683049af61" name="a253e51d6dc7226a863a123683049af61"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a253e51d6dc7226a863a123683049af61">&#9670;&#160;</a></span>getNetworkReactions()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1037,7 +1046,7 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp; gridfire::MultiscalePartitioningEngineView::getNetworkReactions </td>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp; gridfire::MultiscalePartitioningEngineView::getNetworkReactions </td>
           <td>(</td>
           <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
           <td> const</td>
@@ -1051,9 +1060,9 @@ Private Attributes</h2></td></tr>
 </div><div class="memdoc">
 
 <p>Gets the set of logical reactions in the network. </p>
-<dl class="section return"><dt>Returns</dt><dd>A const reference to the <code><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31" title="A set of logical reactions.">LogicalReactionSet</a></code> from the base engine, containing all reactions in the full network. </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the <code>LogicalReactionSet</code> from the base engine, containing all reactions in the full network. </dd></dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#af496e04f7be9a0a51ac65dc95f901ffe">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -1118,8 +1127,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="aa38c367ef3c74d012ccd10521cd5a727" name="aa38c367ef3c74d012ccd10521cd5a727"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa38c367ef3c74d012ccd10521cd5a727">&#9670;&#160;</a></span>getSpeciesDestructionTimescales()</h2>
+<a id="a1a14b0c7ec882b2ad2370f7aa729b9f9" name="a1a14b0c7ec882b2ad2370f7aa729b9f9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1a14b0c7ec882b2ad2370f7aa729b9f9">&#9670;&#160;</a></span>getSpeciesDestructionTimescales()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1130,7 +1139,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt; gridfire::MultiscalePartitioningEngineView::getSpeciesDestructionTimescales </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -1153,7 +1162,7 @@ Private Attributes</h2></td></tr>
 <p>Computes destruction timescales for all species in the network. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y</td><td>Vector of current molar abundances for the full network. </td></tr>
+    <tr><td class="paramname">comp</td><td>The current composition. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -1170,12 +1179,12 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a25c040d3078f6ff2ef38f733eb68f1fa">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="a91d32b7197fcb27ee697d5bfde960f3f" name="a91d32b7197fcb27ee697d5bfde960f3f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a91d32b7197fcb27ee697d5bfde960f3f">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
+<a id="a8db21995e6878f4043f3a5a45bf36d5e" name="a8db21995e6878f4043f3a5a45bf36d5e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8db21995e6878f4043f3a5a45bf36d5e">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1184,7 +1193,7 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">int gridfire::MultiscalePartitioningEngineView::getSpeciesIndex </td>
+          <td class="memname">size_t gridfire::MultiscalePartitioningEngineView::getSpeciesIndex </td>
           <td>(</td>
           <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
           <td> const</td>
@@ -1205,14 +1214,14 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>The index of the species in the base engine's network.</dd></dl>
-<dl class="section user"><dt>How</dt><dd>This method delegates directly to the base engine's <code><a class="el" href="#a91d32b7197fcb27ee697d5bfde960f3f" title="Gets the index of a species in the full network.">getSpeciesIndex()</a></code>. </dd></dl>
+<dl class="section user"><dt>How</dt><dd>This method delegates directly to the base engine's <code><a class="el" href="#a8db21995e6878f4043f3a5a45bf36d5e" title="Gets the index of a species in the full network.">getSpeciesIndex()</a></code>. </dd></dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a8f66fb76c9f983ee93bf8b95cdc85596">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="a560612347bbd5b7b380e990624d01105" name="a560612347bbd5b7b380e990624d01105"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a560612347bbd5b7b380e990624d01105">&#9670;&#160;</a></span>getSpeciesTimescales()</h2>
+<a id="aea2c3d2ae6ddf77bd4a9b07b86f3306b" name="aea2c3d2ae6ddf77bd4a9b07b86f3306b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aea2c3d2ae6ddf77bd4a9b07b86f3306b">&#9670;&#160;</a></span>getSpeciesTimescales()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1223,7 +1232,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">std::expected&lt; std::unordered_map&lt; Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt; gridfire::MultiscalePartitioningEngineView::getSpeciesTimescales </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -1246,7 +1255,7 @@ Private Attributes</h2></td></tr>
 <p>Computes timescales for all species in the network. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y</td><td>Vector of current molar abundances for the full network. </td></tr>
+    <tr><td class="paramname">comp</td><td>The current composition. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -1263,12 +1272,12 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ae7114f5ebc6667b5e5971c0450ed03d9">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="a510b920dea726aef859ac1f6d051807e" name="a510b920dea726aef859ac1f6d051807e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a510b920dea726aef859ac1f6d051807e">&#9670;&#160;</a></span>getStoichiometryMatrixEntry()</h2>
+<a id="a7140384baaaa0bd05ca448a0d8fec471" name="a7140384baaaa0bd05ca448a0d8fec471"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7140384baaaa0bd05ca448a0d8fec471">&#9670;&#160;</a></span>getStoichiometryMatrixEntry()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1279,12 +1288,12 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">int gridfire::MultiscalePartitioningEngineView::getStoichiometryMatrixEntry </td>
           <td>(</td>
-          <td class="paramtype">int</td>          <td class="paramname"><span class="paramname"><em>speciesIndex</em></span>, </td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">int</td>          <td class="paramname"><span class="paramname"><em>reactionIndex</em></span>&#160;) const</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reaction</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -1297,22 +1306,22 @@ Private Attributes</h2></td></tr>
 <p>Gets an entry from the stoichiometry matrix. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">speciesIndex</td><td>Index of the species in the full network. </td></tr>
-    <tr><td class="paramname">reactionIndex</td><td>Index of the reaction in the full network. </td></tr>
+    <tr><td class="paramname">species</td><td>Species to look up stoichiometry for. </td></tr>
+    <tr><td class="paramname">reaction</td><td><a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> to find. </td></tr>
   </table>
   </dd>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>Stoichiometric coefficient for the species in the reaction.</dd></dl>
 <dl class="section user"><dt>Purpose</dt><dd>To query the stoichiometric relationship between a species and a reaction.</dd></dl>
-<dl class="section user"><dt>How</dt><dd>This method delegates directly to the base engine's <code><a class="el" href="#a510b920dea726aef859ac1f6d051807e" title="Gets an entry from the stoichiometry matrix.">getStoichiometryMatrixEntry()</a></code>.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>This method delegates directly to the base engine's <code><a class="el" href="#a7140384baaaa0bd05ca448a0d8fec471" title="Gets an entry from the stoichiometry matrix.">getStoichiometryMatrixEntry()</a></code>.</dd></dl>
 <dl class="section pre"><dt>Precondition</dt><dd><code><a class="el" href="#abe76a46784b1ebc8ad67a9eec40d369a" title="Generates the stoichiometry matrix for the network.">generateStoichiometryMatrix()</a></code> must have been called. </dd></dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad19c8451b6f624e2938f771cc067d5c1">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
-<a id="a54ca8004fbd8d6d3ea6f67efeb5dbc8d" name="a54ca8004fbd8d6d3ea6f67efeb5dbc8d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a54ca8004fbd8d6d3ea6f67efeb5dbc8d">&#9670;&#160;</a></span>identifyMeanSlowestPool()</h2>
+<a id="a70f4a0c4123b7f78305f64eb11beeeeb" name="a70f4a0c4123b7f78305f64eb11beeeeb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a70f4a0c4123b7f78305f64eb11beeeeb">&#9670;&#160;</a></span>identifyMeanSlowestPool()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1323,12 +1332,12 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">size_t gridfire::MultiscalePartitioningEngineView::identifyMeanSlowestPool </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; std::vector&lt; size_t &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>pools</em></span>, </td>
+          <td class="paramtype">const std::vector&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>pools</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -1352,7 +1361,7 @@ Private Attributes</h2></td></tr>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
     <tr><td class="paramname">pools</td><td>A vector of vectors of species indices, where each inner vector represents a timescale pool. </td></tr>
-    <tr><td class="paramname">Y</td><td>Vector of current molar abundances for the full network. </td></tr>
+    <tr><td class="paramname">comp</td><td>Vector of current molar abundances for the full network. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -1439,8 +1448,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="ad4d29ee55f89384807616d1068797067" name="ad4d29ee55f89384807616d1068797067"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad4d29ee55f89384807616d1068797067">&#9670;&#160;</a></span>partitionByTimescale()</h2>
+<a id="a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6" name="a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6">&#9670;&#160;</a></span>partitionByTimescale()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1449,9 +1458,9 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::vector&lt; std::vector&lt; size_t &gt; &gt; gridfire::MultiscalePartitioningEngineView::partitionByTimescale </td>
+          <td class="memname">std::vector&lt; std::vector&lt; Species &gt; &gt; gridfire::MultiscalePartitioningEngineView::partitionByTimescale </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_full</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -1474,7 +1483,7 @@ Private Attributes</h2></td></tr>
 <p>Partitions the network by timescale. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y_full</td><td>Vector of current molar abundances for all species. </td></tr>
+    <tr><td class="paramname">comp</td><td>Vector of current molar abundances for all species. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -1484,10 +1493,56 @@ Private Attributes</h2></td></tr>
 <dl class="section user"><dt>Purpose</dt><dd>To group species into "pools" based on their destruction timescales.</dd></dl>
 <dl class="section user"><dt>How</dt><dd>It retrieves all species destruction timescales from the base engine, sorts them, and then iterates through the sorted list, creating a new pool whenever it detects a gap between consecutive timescales that is larger than a predefined threshold (e.g., a factor of 100). </dd></dl>
 
+</div>
+</div>
+<a id="a3c327a40d7c667043826002975baa2b4" name="a3c327a40d7c667043826002975baa2b4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3c327a40d7c667043826002975baa2b4">&#9670;&#160;</a></span>partitionNetwork() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::MultiscalePartitioningEngineView::partitionNetwork </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Partitions the network into dynamic and algebraic (QSE) groups based on timescales. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Vector of current molar abundances for the full network. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Purpose</dt><dd>To perform the core partitioning logic that identifies which species are "fast" (and can be treated algebraically) and which are "slow" (and must be integrated dynamically).</dd></dl>
+<p>@how</p><ol type="1">
+<li><b><code>partitionByTimescale</code></b>: Gets species destruction timescales from the base engine, sorts them, and looks for large gaps to create timescale "pools".</li>
+<li><b><code>identifyMeanSlowestPool</code></b>: The pool with the slowest average timescale is designated as the core set of dynamic species.</li>
+<li><b><code>analyzeTimescalePoolConnectivity</code></b>: The other (faster) pools are analyzed for reaction connectivity to form cohesive groups.</li>
+<li><b><code>constructCandidateGroups</code></b>: These connected groups are processed to identify "seed" species (dynamic species that feed the group) and "algebraic" species (the rest).</li>
+<li><b><code>validateGroupsWithFluxAnalysis</code></b>: The groups are validated by ensuring their internal reaction flux is much larger than the flux connecting them to the outside network.</li>
+</ol>
+<dl class="section pre"><dt>Precondition</dt><dd>The input state (Y, T9, rho) must be a valid physical state. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The internal member variables <code>m_qse_groups</code>, <code>m_dynamic_species</code>, and <code>m_algebraic_species</code> (and their index maps) are populated with the results of the partitioning. </dd></dl>
+
 </div>
 </div>
 <a id="a98b11ffe498846f5a3a72f08504346b7" name="a98b11ffe498846f5a3a72f08504346b7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a98b11ffe498846f5a3a72f08504346b7">&#9670;&#160;</a></span>partitionNetwork() <span class="overload">[1/2]</span></h2>
+<h2 class="memtitle"><span class="permalink"><a href="#a98b11ffe498846f5a3a72f08504346b7">&#9670;&#160;</a></span>partitionNetwork() <span class="overload">[2/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1511,52 +1566,6 @@ Private Attributes</h2></td></tr>
 <dl class="section user"><dt>Purpose</dt><dd>A convenience overload for <code>partitionNetwork</code>.</dd></dl>
 <dl class="section user"><dt>How</dt><dd>It unpacks the <code>netIn</code> struct into <code>Y</code>, <code>T9</code>, and <code>rho</code> and then calls the primary <code>partitionNetwork</code> method. </dd></dl>
 
-</div>
-</div>
-<a id="a7d26945df5395b9317552a3989c42d1c" name="a7d26945df5395b9317552a3989c42d1c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7d26945df5395b9317552a3989c42d1c">&#9670;&#160;</a></span>partitionNetwork() <span class="overload">[2/2]</span></h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">void gridfire::MultiscalePartitioningEngineView::partitionNetwork </td>
-          <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;)</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Partitions the network into dynamic and algebraic (QSE) groups based on timescales. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">Y</td><td>Vector of current molar abundances for the full network. </td></tr>
-    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
-    <tr><td class="paramname">rho</td><td>Density in g/cm^3.</td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section user"><dt>Purpose</dt><dd>To perform the core partitioning logic that identifies which species are "fast" (and can be treated algebraically) and which are "slow" (and must be integrated dynamically).</dd></dl>
-<p>@how</p><ol type="1">
-<li><b><code>partitionByTimescale</code></b>: Gets species destruction timescales from the base engine, sorts them, and looks for large gaps to create timescale "pools".</li>
-<li><b><code>identifyMeanSlowestPool</code></b>: The pool with the slowest average timescale is designated as the core set of dynamic species.</li>
-<li><b><code>analyzeTimescalePoolConnectivity</code></b>: The other (faster) pools are analyzed for reaction connectivity to form cohesive groups.</li>
-<li><b><code>constructCandidateGroups</code></b>: These connected groups are processed to identify "seed" species (dynamic species that feed the group) and "algebraic" species (the rest).</li>
-<li><b><code>validateGroupsWithFluxAnalysis</code></b>: The groups are validated by ensuring their internal reaction flux is much larger than the flux connecting them to the outside network.</li>
-</ol>
-<dl class="section pre"><dt>Precondition</dt><dd>The input state (Y, T9, rho) must be a valid physical state. </dd></dl>
-<dl class="section post"><dt>Postcondition</dt><dd>The internal member variables <code>m_qse_groups</code>, <code>m_dynamic_species</code>, and <code>m_algebraic_species</code> (and their index maps) are populated with the results of the partitioning. </dd></dl>
-
 </div>
 </div>
 <a id="a05730ced13ac5331060ca011f0da6235" name="a05730ced13ac5331060ca011f0da6235"></a>
@@ -1597,8 +1606,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="acb5fa7f03cd89b8c1b6b9ffdf3abb12e" name="acb5fa7f03cd89b8c1b6b9ffdf3abb12e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acb5fa7f03cd89b8c1b6b9ffdf3abb12e">&#9670;&#160;</a></span>setNetworkReactions()</h2>
+<a id="af99f5e4871808188d00379c1c35868fe" name="af99f5e4871808188d00379c1c35868fe"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af99f5e4871808188d00379c1c35868fe">&#9670;&#160;</a></span>setNetworkReactions()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1609,7 +1618,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">void gridfire::MultiscalePartitioningEngineView::setNetworkReactions </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -1636,7 +1645,7 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f">gridfire::DynamicEngine</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1_dynamic_engine.html#a49025489901e22a20cdf99b455ff2ff0">gridfire::DynamicEngine</a>.</p>
 
 </div>
 </div>
@@ -1676,8 +1685,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a3c5fcb8e3396d74359fd601554c9ffa9" name="a3c5fcb8e3396d74359fd601554c9ffa9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3c5fcb8e3396d74359fd601554c9ffa9">&#9670;&#160;</a></span>solveQSEAbundances()</h2>
+<a id="a40ce2c18063cd56cffd58419b9ae96bf" name="a40ce2c18063cd56cffd58419b9ae96bf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a40ce2c18063cd56cffd58419b9ae96bf">&#9670;&#160;</a></span>solveQSEAbundances()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1686,9 +1695,9 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::vector&lt; double &gt; gridfire::MultiscalePartitioningEngineView::solveQSEAbundances </td>
+          <td class="memname">fourdst::composition::Composition gridfire::MultiscalePartitioningEngineView::solveQSEAbundances </td>
           <td>(</td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_full</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -1711,7 +1720,7 @@ Private Attributes</h2></td></tr>
 <p>Solves for the QSE abundances of the algebraic species in a given state. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">Y_full</td><td>Vector of current molar abundances for all species in the base engine. </td></tr>
+    <tr><td class="paramname">comp</td><td>Vector of current molar abundances for all species in the base engine. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -1759,9 +1768,9 @@ Private Attributes</h2></td></tr>
 <dl class="section user"><dt>Purpose</dt><dd>This is the main entry point for preparing the multiscale engine for use. It triggers the network partitioning and solves for the initial QSE abundances, caching the result.</dd></dl>
 <p>@how</p><ol type="1">
 <li>It first checks the QSE cache. If a valid entry already exists for the input state, it returns the input composition, as no work is needed.</li>
-<li>If the cache misses, it calls <code><a class="el" href="#a4bc879246c6fbd8633b05052858df51d" title="Equilibrates the network by partitioning and solving for QSE abundances.">equilibrateNetwork()</a></code>.</li>
-<li><code><a class="el" href="#a4bc879246c6fbd8633b05052858df51d" title="Equilibrates the network by partitioning and solving for QSE abundances.">equilibrateNetwork()</a></code> in turn calls <code><a class="el" href="#a7d26945df5395b9317552a3989c42d1c" title="Partitions the network into dynamic and algebraic (QSE) groups based on timescales.">partitionNetwork()</a></code> to define the dynamic and algebraic species sets.</li>
-<li>It then calls <code><a class="el" href="#a3c5fcb8e3396d74359fd601554c9ffa9" title="Solves for the QSE abundances of the algebraic species in a given state.">solveQSEAbundances()</a></code> to compute the equilibrium abundances.</li>
+<li>If the cache misses, it calls <code><a class="el" href="#a2f0c45d4e2b2f9de5d961088f3ab0a9a" title="Equilibrates the network by partitioning and solving for QSE abundances.">equilibrateNetwork()</a></code>.</li>
+<li><code><a class="el" href="#a2f0c45d4e2b2f9de5d961088f3ab0a9a" title="Equilibrates the network by partitioning and solving for QSE abundances.">equilibrateNetwork()</a></code> in turn calls <code><a class="el" href="#a3c327a40d7c667043826002975baa2b4" title="Partitions the network into dynamic and algebraic (QSE) groups based on timescales.">partitionNetwork()</a></code> to define the dynamic and algebraic species sets.</li>
+<li>It then calls <code><a class="el" href="#a40ce2c18063cd56cffd58419b9ae96bf" title="Solves for the QSE abundances of the algebraic species in a given state.">solveQSEAbundances()</a></code> to compute the equilibrium abundances.</li>
 <li>The resulting equilibrium abundances for the algebraic species are stored in the <code>m_qse_abundance_cache</code>.</li>
 <li>A new <code>fourdst::composition::Composition</code> object reflecting the equilibrated state is created and returned.</li>
 </ol>
@@ -1772,8 +1781,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="aa55ed182301d216264daae3e6dfd8917" name="aa55ed182301d216264daae3e6dfd8917"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa55ed182301d216264daae3e6dfd8917">&#9670;&#160;</a></span>validateGroupsWithFluxAnalysis()</h2>
+<a id="ad94c6fa2281d9104471631c6b90f411e" name="ad94c6fa2281d9104471631c6b90f411e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad94c6fa2281d9104471631c6b90f411e">&#9670;&#160;</a></span>validateGroupsWithFluxAnalysis()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1782,14 +1791,14 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::vector&lt; <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">MultiscalePartitioningEngineView::QSEGroup</a> &gt; gridfire::MultiscalePartitioningEngineView::validateGroupsWithFluxAnalysis </td>
+          <td class="memname">std::pair&lt; std::vector&lt; <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">MultiscalePartitioningEngineView::QSEGroup</a> &gt;, std::vector&lt; <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">MultiscalePartitioningEngineView::QSEGroup</a> &gt; &gt; gridfire::MultiscalePartitioningEngineView::validateGroupsWithFluxAnalysis </td>
           <td>(</td>
           <td class="paramtype">const std::vector&lt; <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">QSEGroup</a> &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>candidate_groups</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -1813,7 +1822,7 @@ Private Attributes</h2></td></tr>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
     <tr><td class="paramname">candidate_groups</td><td>A vector of candidate QSE groups. </td></tr>
-    <tr><td class="paramname">Y</td><td>Vector of current molar abundances for the full network. </td></tr>
+    <tr><td class="paramname">comp</td><td>Vector of current molar abundances for the full network. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
   </table>
@@ -1872,6 +1881,30 @@ Private Attributes</h2></td></tr>
 
 <p>Indices of all species considered active in the current partition (dynamic + algebraic). </p>
 
+</div>
+</div>
+<a id="a3af2b37ce21829d9554d702cad074470" name="a3af2b37ce21829d9554d702cad074470"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3af2b37ce21829d9554d702cad074470">&#9670;&#160;</a></span>m_algebraic_abundances</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;fourdst::atomic::Species, double&gt; gridfire::MultiscalePartitioningEngineView::m_algebraic_abundances</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Map from species to their calculated abundances in the QSE state. </p>
+
 </div>
 </div>
 <a id="a4656c05b8235dbf4ec698b03a716a8c8" name="a4656c05b8235dbf4ec698b03a716a8c8"></a>
@@ -1896,30 +1929,6 @@ Private Attributes</h2></td></tr>
 
 <p>Species that are treated as algebraic (in QSE) in the QSE groups. </p>
 
-</div>
-</div>
-<a id="a53862719dd73f98bc69eecde090cf655" name="a53862719dd73f98bc69eecde090cf655"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a53862719dd73f98bc69eecde090cf655">&#9670;&#160;</a></span>m_algebraic_species_indices</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::vector&lt;size_t&gt; gridfire::MultiscalePartitioningEngineView::m_algebraic_species_indices</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Indices of algebraic species in the full network. </p>
-
 </div>
 </div>
 <a id="a0437c51f94bf834a11adf481b2afad93" name="a0437c51f94bf834a11adf481b2afad93"></a>
@@ -1992,30 +2001,6 @@ Private Attributes</h2></td></tr>
 
 <p>The simplified set of species presented to the solver (the "slow" species). </p>
 
-</div>
-</div>
-<a id="a38b4f0373c3bd81503889650c0bb69bb" name="a38b4f0373c3bd81503889650c0bb69bb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a38b4f0373c3bd81503889650c0bb69bb">&#9670;&#160;</a></span>m_dynamic_species_indices</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::vector&lt;size_t&gt; gridfire::MultiscalePartitioningEngineView::m_dynamic_species_indices</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Indices mapping the dynamic species back to the base engine's full species list. </p>
-
 </div>
 </div>
 <a id="a7d357c775dcbb253a4001d172805380a" name="a7d357c775dcbb253a4001d172805380a"></a>
diff --git a/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view.js b/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view.js
index 582550e1..2ac4a90e 100644
--- a/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view.js
+++ b/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view.js
@@ -5,48 +5,47 @@ var classgridfire_1_1_multiscale_partitioning_engine_view =
     [ "QSEGroup", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group" ],
     [ "QSEPartition", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681", null ],
     [ "MultiscalePartitioningEngineView", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f", null ],
-    [ "analyzeTimescalePoolConnectivity", "classgridfire_1_1_multiscale_partitioning_engine_view.html#af13e764c118a6cc51847384e9c70e05b", null ],
-    [ "buildConnectivityGraph", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aae0865e361dfeb23984d70409fdd9f39", null ],
-    [ "buildConnectivityGraph", "classgridfire_1_1_multiscale_partitioning_engine_view.html#ae3875c61dc916c0982ed122c2e272d94", null ],
-    [ "calculateMolarReactionFlow", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044", null ],
-    [ "calculateRHSAndEnergy", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb", null ],
-    [ "constructCandidateGroups", "classgridfire_1_1_multiscale_partitioning_engine_view.html#ac206840057bac65b7f7738e6dfd1047a", null ],
+    [ "analyzeTimescalePoolConnectivity", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a05e45017bbb772c586f483bd527004ee", null ],
+    [ "buildConnectivityGraph", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a5d1c11f3c0883385833462dd088f6f89", null ],
+    [ "calculateEpsDerivatives", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a99f9116d5a18afcbf0e808ef111d1be8", null ],
+    [ "calculateMolarReactionFlow", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a87687a960f263a4e1bc035e4d0a345db", null ],
+    [ "calculateRHSAndEnergy", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a5c1ab19bc3394a5d29241ef02073c4cb", null ],
+    [ "constructCandidateGroups", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aaabaae8e33ca8a05a2aa1f374e792795", null ],
+    [ "equilibrateNetwork", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a2f0c45d4e2b2f9de5d961088f3ab0a9a", null ],
     [ "equilibrateNetwork", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc", null ],
-    [ "equilibrateNetwork", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d", null ],
-    [ "exportToDot", "classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18", null ],
-    [ "generateJacobianMatrix", "classgridfire_1_1_multiscale_partitioning_engine_view.html#acdf5ad8765290ea2b78170235aea391d", null ],
+    [ "exportToDot", "classgridfire_1_1_multiscale_partitioning_engine_view.html#adfa1e133c49c0ef78b374d37e90a3372", null ],
+    [ "generateJacobianMatrix", "classgridfire_1_1_multiscale_partitioning_engine_view.html#ab9f71bc9a1c0f98ec9cc1c7da00fd975", null ],
     [ "generateStoichiometryMatrix", "classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a", null ],
     [ "getBaseEngine", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1", null ],
     [ "getDynamicSpecies", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888", null ],
     [ "getFastSpecies", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e", null ],
-    [ "getJacobianMatrixEntry", "classgridfire_1_1_multiscale_partitioning_engine_view.html#ac961484383e86d9712a424728e068633", null ],
-    [ "getNetworkReactions", "classgridfire_1_1_multiscale_partitioning_engine_view.html#ad751f2c1306895ee74a61f2071ca96eb", null ],
+    [ "getJacobianMatrixEntry", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a586da5402750151fee5db2666785b6e4", null ],
+    [ "getNetworkReactions", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a253e51d6dc7226a863a123683049af61", null ],
     [ "getNetworkSpecies", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80", null ],
     [ "getScreeningModel", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82", null ],
-    [ "getSpeciesDestructionTimescales", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aa38c367ef3c74d012ccd10521cd5a727", null ],
-    [ "getSpeciesIndex", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a91d32b7197fcb27ee697d5bfde960f3f", null ],
-    [ "getSpeciesTimescales", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a560612347bbd5b7b380e990624d01105", null ],
-    [ "getStoichiometryMatrixEntry", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a510b920dea726aef859ac1f6d051807e", null ],
-    [ "identifyMeanSlowestPool", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a54ca8004fbd8d6d3ea6f67efeb5dbc8d", null ],
+    [ "getSpeciesDestructionTimescales", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a14b0c7ec882b2ad2370f7aa729b9f9", null ],
+    [ "getSpeciesIndex", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a8db21995e6878f4043f3a5a45bf36d5e", null ],
+    [ "getSpeciesTimescales", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aea2c3d2ae6ddf77bd4a9b07b86f3306b", null ],
+    [ "getStoichiometryMatrixEntry", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a7140384baaaa0bd05ca448a0d8fec471", null ],
+    [ "identifyMeanSlowestPool", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a70f4a0c4123b7f78305f64eb11beeeeb", null ],
     [ "isStale", "classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46", null ],
     [ "mapNetInToMolarAbundanceVector", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0", null ],
-    [ "partitionByTimescale", "classgridfire_1_1_multiscale_partitioning_engine_view.html#ad4d29ee55f89384807616d1068797067", null ],
+    [ "partitionByTimescale", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6", null ],
+    [ "partitionNetwork", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c327a40d7c667043826002975baa2b4", null ],
     [ "partitionNetwork", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7", null ],
-    [ "partitionNetwork", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c", null ],
     [ "primeEngine", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235", null ],
-    [ "setNetworkReactions", "classgridfire_1_1_multiscale_partitioning_engine_view.html#acb5fa7f03cd89b8c1b6b9ffdf3abb12e", null ],
+    [ "setNetworkReactions", "classgridfire_1_1_multiscale_partitioning_engine_view.html#af99f5e4871808188d00379c1c35868fe", null ],
     [ "setScreeningModel", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f", null ],
-    [ "solveQSEAbundances", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c5fcb8e3396d74359fd601554c9ffa9", null ],
+    [ "solveQSEAbundances", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a40ce2c18063cd56cffd58419b9ae96bf", null ],
     [ "update", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8", null ],
-    [ "validateGroupsWithFluxAnalysis", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aa55ed182301d216264daae3e6dfd8917", null ],
+    [ "validateGroupsWithFluxAnalysis", "classgridfire_1_1_multiscale_partitioning_engine_view.html#ad94c6fa2281d9104471631c6b90f411e", null ],
     [ "m_activeReactionIndices", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb", null ],
     [ "m_activeSpeciesIndices", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8", null ],
+    [ "m_algebraic_abundances", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a3af2b37ce21829d9554d702cad074470", null ],
     [ "m_algebraic_species", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8", null ],
-    [ "m_algebraic_species_indices", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a53862719dd73f98bc69eecde090cf655", null ],
     [ "m_baseEngine", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93", null ],
     [ "m_cacheStats", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a", null ],
     [ "m_dynamic_species", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f", null ],
-    [ "m_dynamic_species_indices", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a38b4f0373c3bd81503889650c0bb69bb", null ],
     [ "m_logger", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a", null ],
     [ "m_qse_abundance_cache", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e", null ],
     [ "m_qse_groups", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6", null ]
diff --git a/docs/html/classgridfire_1_1_network.html b/docs/html/classgridfire_1_1_network.html
index 962dad59..fd4ef7fc 100644
--- a/docs/html/classgridfire_1_1_network.html
+++ b/docs/html/classgridfire_1_1_network.html
@@ -287,7 +287,7 @@ Protected Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
diff --git a/docs/html/classgridfire_1_1_network_priming_engine_view-members.html b/docs/html/classgridfire_1_1_network_priming_engine_view-members.html
index 6c3dacad..f81f8df2 100644
--- a/docs/html/classgridfire_1_1_network_priming_engine_view-members.html
+++ b/docs/html/classgridfire_1_1_network_priming_engine_view-members.html
@@ -105,50 +105,51 @@ $(function(){initNavTree('classgridfire_1_1_network_priming_engine_view.html',''
 
 <p>This is the complete list of members for <a class="el" href="classgridfire_1_1_network_priming_engine_view.html">gridfire::NetworkPrimingEngineView</a>, including all inherited members.</p>
 <table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d">calculateRHSAndEnergy</a>(const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e">collect</a>(const std::vector&lt; std::string &gt; &amp;peNames)</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f">constructPrimingReactionSet</a>(const fourdst::atomic::Species &amp;primingSpecies, const DynamicEngine &amp;baseEngine) const</td><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html">gridfire::NetworkPrimingEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68">constructReactionIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985">constructSpeciesIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92">DefinedEngineView</a>(const std::vector&lt; std::string &gt; &amp;peNames, DynamicEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae">generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_dynamic, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7">gridfire::DynamicEngine::generateJacobianMatrix</a>(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484">getBaseEngine</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b">getJacobianMatrixEntry</a>(const int i_defined, const int j_defined) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491">getSpeciesDestructionTimescales</a>(const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72">getSpeciesTimescales</a>(const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2">getStoichiometryMatrixEntry</a>(const int speciesIndex_defined, const int reactionIndex_defined) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87">isStale</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965">m_activeReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae">m_activeSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195">m_baseEngine</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382">m_isStale</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html">gridfire::NetworkPrimingEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5">m_primingSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html">gridfire::NetworkPrimingEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd">m_reactionIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e">m_speciesIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873">mapFullToView</a>(const std::vector&lt; double &gt; &amp;full) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843">mapViewToFull</a>(const std::vector&lt; double &gt; &amp;defined) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1">mapViewToFullReactionIndex</a>(size_t definedReactionIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a">mapViewToFullSpeciesIndex</a>(size_t definedSpeciesIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177">NetworkPrimingEngineView</a>(const std::string &amp;primingSymbol, DynamicEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html">gridfire::NetworkPrimingEngineView</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6">NetworkPrimingEngineView</a>(const fourdst::atomic::Species &amp;primingSpecies, DynamicEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html">gridfire::NetworkPrimingEngineView</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460">primeEngine</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf">rebuild</a>(const fourdst::composition::Composition &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d">setNetworkReactions</a>(const reaction::LogicalReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0">validateNetworkState</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html">gridfire::EngineView&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a06aca977aafb4784fd167acb8c02dda2">calculateEpsDerivatives</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a74298377d0432ae3d577be0e9e6052b3">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af273b29d7700cdc34da6e2712fffc5c2">calculateRHSAndEnergy</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e">collect</a>(const std::vector&lt; std::string &gt; &amp;peNames)</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f">constructPrimingReactionSet</a>(const fourdst::atomic::Species &amp;primingSpecies, const DynamicEngine &amp;baseEngine) const</td><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html">gridfire::NetworkPrimingEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68">constructReactionIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985">constructSpeciesIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92">DefinedEngineView</a>(const std::vector&lt; std::string &gt; &amp;peNames, DynamicEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ab80eadd713a40e9263e5231737e956d0">generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd">gridfire::DynamicEngine::generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484">getBaseEngine</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#aa49532266ff959ac66f501336f102ce8">getJacobianMatrixEntry</a>(const fourdst::atomic::Species &amp;rowSpecies, const fourdst::atomic::Species &amp;colSpecies) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a5f9db5a9287aa03b2fa4d516e9a576b6">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a7bcf169ba1e12e3356d4bcc27c3fc554">getSpeciesDestructionTimescales</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af3b355ffcda6a8f2841184cc56e3761a">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a18f46d92ea7e04068ad9e7af4ed605a8">getSpeciesTimescales</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af1843cfd2a95bfa46ab40d4c4de11ef9">getStoichiometryMatrixEntry</a>(const fourdst::atomic::Species &amp;species, const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87">isStale</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a824fe65ae22fa856051f2652764a0bb6">m_activeReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae">m_activeSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195">m_baseEngine</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382">m_isStale</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html">gridfire::NetworkPrimingEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5">m_primingSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html">gridfire::NetworkPrimingEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd">m_reactionIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e">m_speciesIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873">mapFullToView</a>(const std::vector&lt; double &gt; &amp;full) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843">mapViewToFull</a>(const std::vector&lt; double &gt; &amp;defined) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1">mapViewToFullReactionIndex</a>(size_t definedReactionIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a">mapViewToFullSpeciesIndex</a>(size_t definedSpeciesIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177">NetworkPrimingEngineView</a>(const std::string &amp;primingSymbol, DynamicEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html">gridfire::NetworkPrimingEngineView</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6">NetworkPrimingEngineView</a>(const fourdst::atomic::Species &amp;primingSpecies, DynamicEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1_network_priming_engine_view.html">gridfire::NetworkPrimingEngineView</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460">primeEngine</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf">rebuild</a>(const fourdst::composition::Composition &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9">setNetworkReactions</a>(const reaction::ReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0">validateNetworkState</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_defined_engine_view.html">gridfire::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html">gridfire::EngineView&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/classgridfire_1_1_network_priming_engine_view.html b/docs/html/classgridfire_1_1_network_priming_engine_view.html
index 6f0b8684..944adacf 100644
--- a/docs/html/classgridfire_1_1_network_priming_engine_view.html
+++ b/docs/html/classgridfire_1_1_network_priming_engine_view.html
@@ -142,34 +142,37 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:a1a55f9748c45af6f13e16a6b6ceaa211 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a1a55f9748c45af6f13e16a6b6ceaa211"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211">getNetworkSpecies</a> () const override</td></tr>
 <tr class="memdesc:a1a55f9748c45af6f13e16a6b6ceaa211 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the list of active species in the network defined by the file.  <br /></td></tr>
 <tr class="separator:a1a55f9748c45af6f13e16a6b6ceaa211 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4b0d71367cb1d4c06bcd01251bbeb60d inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a4b0d71367cb1d4c06bcd01251bbeb60d"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d">calculateRHSAndEnergy</a> (const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:a4b0d71367cb1d4c06bcd01251bbeb60d inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the right-hand side (dY/dt) and energy generation for the active species.  <br /></td></tr>
-<tr class="separator:a4b0d71367cb1d4c06bcd01251bbeb60d inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad25c722eaee1f28f8ed7b4d33a1f69ae inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_ad25c722eaee1f28f8ed7b4d33a1f69ae"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae">generateJacobianMatrix</a> (const std::vector&lt; double &gt; &amp;Y_dynamic, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:ad25c722eaee1f28f8ed7b4d33a1f69ae inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for the active species.  <br /></td></tr>
-<tr class="separator:ad25c722eaee1f28f8ed7b4d33a1f69ae inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a273b175049f5ce7b9208e931ad139e1b inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a273b175049f5ce7b9208e931ad139e1b"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b">getJacobianMatrixEntry</a> (const int i_defined, const int j_defined) const override</td></tr>
-<tr class="memdesc:a273b175049f5ce7b9208e931ad139e1b inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the Jacobian matrix for the active species.  <br /></td></tr>
-<tr class="separator:a273b175049f5ce7b9208e931ad139e1b inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af273b29d7700cdc34da6e2712fffc5c2 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_af273b29d7700cdc34da6e2712fffc5c2"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af273b29d7700cdc34da6e2712fffc5c2">calculateRHSAndEnergy</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:af273b29d7700cdc34da6e2712fffc5c2 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the right-hand side (dY/dt) and energy generation for the active species.  <br /></td></tr>
+<tr class="separator:af273b29d7700cdc34da6e2712fffc5c2 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a06aca977aafb4784fd167acb8c02dda2 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a06aca977aafb4784fd167acb8c02dda2"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a06aca977aafb4784fd167acb8c02dda2">calculateEpsDerivatives</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a06aca977aafb4784fd167acb8c02dda2 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the derivatives of the energy generation rate with respect to T and rho.  <br /></td></tr>
+<tr class="separator:a06aca977aafb4784fd167acb8c02dda2 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab80eadd713a40e9263e5231737e956d0 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_ab80eadd713a40e9263e5231737e956d0"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ab80eadd713a40e9263e5231737e956d0">generateJacobianMatrix</a> (const fourdst::composition::Composition &amp;comp, const double T9, const double rho) const override</td></tr>
+<tr class="memdesc:ab80eadd713a40e9263e5231737e956d0 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for the active species.  <br /></td></tr>
+<tr class="separator:ab80eadd713a40e9263e5231737e956d0 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa49532266ff959ac66f501336f102ce8 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_aa49532266ff959ac66f501336f102ce8"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#aa49532266ff959ac66f501336f102ce8">getJacobianMatrixEntry</a> (const fourdst::atomic::Species &amp;rowSpecies, const fourdst::atomic::Species &amp;colSpecies) const override</td></tr>
+<tr class="memdesc:aa49532266ff959ac66f501336f102ce8 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the Jacobian matrix for the active species.  <br /></td></tr>
+<tr class="separator:aa49532266ff959ac66f501336f102ce8 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:ad07221be49ae1b5133c5b987dafac3b6 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_ad07221be49ae1b5133c5b987dafac3b6"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6">generateStoichiometryMatrix</a> () override</td></tr>
 <tr class="memdesc:ad07221be49ae1b5133c5b987dafac3b6 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the stoichiometry matrix for the active reactions and species.  <br /></td></tr>
 <tr class="separator:ad07221be49ae1b5133c5b987dafac3b6 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afa2820971397114d788730cc33feefe2 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_afa2820971397114d788730cc33feefe2"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2">getStoichiometryMatrixEntry</a> (const int speciesIndex_defined, const int reactionIndex_defined) const override</td></tr>
-<tr class="memdesc:afa2820971397114d788730cc33feefe2 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the stoichiometry matrix for the active species and reactions.  <br /></td></tr>
-<tr class="separator:afa2820971397114d788730cc33feefe2 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a142725470f96cba3edb48a29f1264032 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a142725470f96cba3edb48a29f1264032"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:a142725470f96cba3edb48a29f1264032 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the molar reaction flow for a given reaction in the active network.  <br /></td></tr>
-<tr class="separator:a142725470f96cba3edb48a29f1264032 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae03b4f9afac03d4011a4d7cf0423535d inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_ae03b4f9afac03d4011a4d7cf0423535d"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d">getNetworkReactions</a> () const override</td></tr>
-<tr class="memdesc:ae03b4f9afac03d4011a4d7cf0423535d inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the set of active logical reactions in the network.  <br /></td></tr>
-<tr class="separator:ae03b4f9afac03d4011a4d7cf0423535d inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9736edfb7c9148b60de30d50c0d3530d inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a9736edfb7c9148b60de30d50c0d3530d"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d">setNetworkReactions</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;reactions) override</td></tr>
-<tr class="separator:a9736edfb7c9148b60de30d50c0d3530d inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac8daafabbc76f4b6811bede241a03d72 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_ac8daafabbc76f4b6811bede241a03d72"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72">getSpeciesTimescales</a> (const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:ac8daafabbc76f4b6811bede241a03d72 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes timescales for all active species in the network.  <br /></td></tr>
-<tr class="separator:ac8daafabbc76f4b6811bede241a03d72 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3d58e36ed8a6a0d82bb65e91090f7491 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a3d58e36ed8a6a0d82bb65e91090f7491"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491">getSpeciesDestructionTimescales</a> (const std::vector&lt; double &gt; &amp;Y_defined, const double T9, const double rho) const override</td></tr>
-<tr class="separator:a3d58e36ed8a6a0d82bb65e91090f7491 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af1843cfd2a95bfa46ab40d4c4de11ef9 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_af1843cfd2a95bfa46ab40d4c4de11ef9"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af1843cfd2a95bfa46ab40d4c4de11ef9">getStoichiometryMatrixEntry</a> (const fourdst::atomic::Species &amp;species, const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction) const override</td></tr>
+<tr class="memdesc:af1843cfd2a95bfa46ab40d4c4de11ef9 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the stoichiometry matrix for the active species and reactions.  <br /></td></tr>
+<tr class="separator:af1843cfd2a95bfa46ab40d4c4de11ef9 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a74298377d0432ae3d577be0e9e6052b3 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a74298377d0432ae3d577be0e9e6052b3"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a74298377d0432ae3d577be0e9e6052b3">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a74298377d0432ae3d577be0e9e6052b3 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the molar reaction flow for a given reaction in the active network.  <br /></td></tr>
+<tr class="separator:a74298377d0432ae3d577be0e9e6052b3 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5f9db5a9287aa03b2fa4d516e9a576b6 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a5f9db5a9287aa03b2fa4d516e9a576b6"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a5f9db5a9287aa03b2fa4d516e9a576b6">getNetworkReactions</a> () const override</td></tr>
+<tr class="memdesc:a5f9db5a9287aa03b2fa4d516e9a576b6 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the set of active logical reactions in the network.  <br /></td></tr>
+<tr class="separator:a5f9db5a9287aa03b2fa4d516e9a576b6 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a655e74357cce822c4508069a3bcac2c9 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a655e74357cce822c4508069a3bcac2c9"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9">setNetworkReactions</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions) override</td></tr>
+<tr class="separator:a655e74357cce822c4508069a3bcac2c9 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a18f46d92ea7e04068ad9e7af4ed605a8 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a18f46d92ea7e04068ad9e7af4ed605a8"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a18f46d92ea7e04068ad9e7af4ed605a8">getSpeciesTimescales</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a18f46d92ea7e04068ad9e7af4ed605a8 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes timescales for all active species in the network.  <br /></td></tr>
+<tr class="separator:a18f46d92ea7e04068ad9e7af4ed605a8 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7bcf169ba1e12e3356d4bcc27c3fc554 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a7bcf169ba1e12e3356d4bcc27c3fc554"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">expectations::StaleEngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a7bcf169ba1e12e3356d4bcc27c3fc554">getSpeciesDestructionTimescales</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="separator:a7bcf169ba1e12e3356d4bcc27c3fc554 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:ae5762f395caea5381ec177507816b5ae inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_ae5762f395caea5381ec177507816b5ae"><td class="memItemLeft" align="right" valign="top">fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae">update</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn) override</td></tr>
 <tr class="memdesc:ae5762f395caea5381ec177507816b5ae inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Updates the engine view if it is marked as stale.  <br /></td></tr>
 <tr class="separator:ae5762f395caea5381ec177507816b5ae inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -181,9 +184,9 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:a3c657b82a0117118a4bb0ce7f624ae0c inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a3c657b82a0117118a4bb0ce7f624ae0c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c">getScreeningModel</a> () const override</td></tr>
 <tr class="memdesc:a3c657b82a0117118a4bb0ce7f624ae0c inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the screening model from the base engine.  <br /></td></tr>
 <tr class="separator:a3c657b82a0117118a4bb0ce7f624ae0c inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abfee22688617ffe91c69be93049c89b3 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_abfee22688617ffe91c69be93049c89b3"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
-<tr class="memdesc:abfee22688617ffe91c69be93049c89b3 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the index of a species in the network.  <br /></td></tr>
-<tr class="separator:abfee22688617ffe91c69be93049c89b3 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af3b355ffcda6a8f2841184cc56e3761a inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_af3b355ffcda6a8f2841184cc56e3761a"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#af3b355ffcda6a8f2841184cc56e3761a">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:af3b355ffcda6a8f2841184cc56e3761a inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the index of a species in the network.  <br /></td></tr>
+<tr class="separator:af3b355ffcda6a8f2841184cc56e3761a inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a72789c1c3379594b65b560da50192de2 inherit pub_methods_classgridfire_1_1_defined_engine_view" id="r_a72789c1c3379594b65b560da50192de2"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2">mapNetInToMolarAbundanceVector</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn) const override</td></tr>
 <tr class="memdesc:a72789c1c3379594b65b560da50192de2 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map a <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> object to a vector of molar abundances.  <br /></td></tr>
 <tr class="separator:a72789c1c3379594b65b560da50192de2 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -191,8 +194,8 @@ Public Member Functions</h2></td></tr>
 <tr class="memdesc:a13033abd3b44904f98b58c93e22da460 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prime the engine with initial conditions.  <br /></td></tr>
 <tr class="separator:a13033abd3b44904f98b58c93e22da460 inherit pub_methods_classgridfire_1_1_defined_engine_view"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="inherit_header pub_methods_classgridfire_1_1_dynamic_engine"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1_dynamic_engine')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td></tr>
-<tr class="memitem:a818d942efa843959393e4eed3263b7e7 inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a818d942efa843959393e4eed3263b7e7"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7">generateJacobianMatrix</a> (const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const <a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">SparsityPattern</a> &amp;sparsityPattern) const</td></tr>
-<tr class="separator:a818d942efa843959393e4eed3263b7e7 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a11d602a708af4629f51873b17f7b8dbd inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a11d602a708af4629f51873b17f7b8dbd"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd">generateJacobianMatrix</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho, const <a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">SparsityPattern</a> &amp;sparsityPattern) const</td></tr>
+<tr class="separator:a11d602a708af4629f51873b17f7b8dbd inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a04317b66ef14d519264bc30ee69f5bf9 inherit pub_methods_classgridfire_1_1_dynamic_engine" id="r_a04317b66ef14d519264bc30ee69f5bf9"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">getDepth</a> () const</td></tr>
 <tr class="memdesc:a04317b66ef14d519264bc30ee69f5bf9 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the depth of the network.  <br /></td></tr>
 <tr class="separator:a04317b66ef14d519264bc30ee69f5bf9 inherit pub_methods_classgridfire_1_1_dynamic_engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -336,7 +339,7 @@ Additional Inherited Members</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel private">private</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
diff --git a/docs/html/classgridfire_1_1_reaction-members.html b/docs/html/classgridfire_1_1_reaction-members.html
index 37e13feb..a8fbed0c 100644
--- a/docs/html/classgridfire_1_1_reaction-members.html
+++ b/docs/html/classgridfire_1_1_reaction-members.html
@@ -105,45 +105,30 @@ $(function(){initNavTree('classgridfire_1_1_reaction.html',''); initResizable(tr
 
 <p>This is the complete list of members for <a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a>, including all inherited members.</p>
 <table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224">all_species</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061">calculate_forward_rate_log_derivative</a>(const double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec">calculate_rate</a>(const double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a735192a42f72cd68f289493753e1a616">calculate_rate</a>(const CppAD::AD&lt; double &gt; T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af">calculate_rate</a>(const T T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629">chapter</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b">contains</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2">contains_product</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45">contains_reactant</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5">excess_energy</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5">hash</a>(uint64_t seed=0) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905">id</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba">is_reverse</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b">m_chapter</a></td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b">m_id</a></td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248">m_peName</a></td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e">m_products</a></td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b">m_qValue</a></td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72">m_rateCoefficients</a></td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11">m_reactants</a></td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9">m_reverse</a></td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6">m_sourceLabel</a></td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97">num_species</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51">operator!=</a>(const Reaction &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8">operator&lt;&lt;</a>(std::ostream &amp;os, const Reaction &amp;r)</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#ac426457cf0a54a15b206549422083bac">operator==</a>(const Reaction &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97">peName</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c">product_species</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02">products</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8">qValue</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e">rateCoefficients</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923">reactant_species</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b">reactants</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c">Reaction</a>(const std::string_view id, const std::string_view peName, const int chapter, const std::vector&lt; fourdst::atomic::Species &gt; &amp;reactants, const std::vector&lt; fourdst::atomic::Species &gt; &amp;products, const double qValue, const std::string_view label, const RateCoefficientSet &amp;sets, const bool reverse=false)</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0">sourceLabel</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac">stoichiometry</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3">stoichiometry</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#ace0b2bee91702e0ab97b6fc74999d6f0">all_species</a>() const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">calculate_energy_generation_rate</a>(const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80">calculate_energy_generation_rate</a>(const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#aec9859c030364e1d4a740197514731db">calculate_log_rate_partial_deriv_wrt_T9</a>(double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;comp) const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#abb3e2b9c5404f45fc5656eeac1d06a6c">calculate_rate</a>(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a8cbc768819bea8497a7b9fa644b8fd65">calculate_rate</a>(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a588a8c19970463d97f5aa333fcd312dc">clone</a>() const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#adaeb5d72faf7d55d4e26f6e1fcba21c1">contains</a>(const fourdst::atomic::Species &amp;species) const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a5a17ca61d069749960e5a83e58c0b8a1">contains_product</a>(const fourdst::atomic::Species &amp;species) const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#afca3afba45a3db79980c8fe18c87c750">contains_reactant</a>(const fourdst::atomic::Species &amp;species) const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a41b1c16f499c9255251ed43725cf698c">hash</a>(uint64_t seed) const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a768329002a4f0b8604b1aa51d56b5d1b">id</a>() const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a640b0bdbed9ed7c2a2e9880ddbcafc1d">is_reverse</a>() const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a348aae35a6c82194ef5387278419e0e6">num_species</a>() const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8">operator&lt;&lt;</a>(std::ostream &amp;os, const Reaction &amp;r)</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#ac2306d841bad605b7c9ae104397cec0f">product_species</a>() const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#ac2918935929030e8d218dc8d107a78f9">products</a>() const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a11c714febaf818f1d4d6c19a064d707e">qValue</a>() const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a4be8440aa7e79eab1d44b5d83bcdab79">reactant_species</a>() const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a0c533797f18c2fe4945f1afb3fb06d5d">reactants</a>() const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a55b7f61d9bde45f2ca485c1b07a05950">stoichiometry</a>() const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#af0a893603aa88f7d7d205b9b969af487">stoichiometry</a>(const fourdst::atomic::Species &amp;species) const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#a186856dc2ce85d8cc4db43c7164b6afa">type</a>() const=0</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/classgridfire_1_1_reaction.html b/docs/html/classgridfire_1_1_reaction.html
index 178ea45d..d9511a4a 100644
--- a/docs/html/classgridfire_1_1_reaction.html
+++ b/docs/html/classgridfire_1_1_reaction.html
@@ -101,11 +101,9 @@ $(function(){initNavTree('classgridfire_1_1_reaction.html',''); initResizable(tr
 <div class="header">
   <div class="summary">
 <a href="#pub-methods">Public Member Functions</a> &#124;
-<a href="#pro-attribs">Protected Attributes</a> &#124;
-<a href="#pri-methods">Private Member Functions</a> &#124;
 <a href="#friends">Friends</a> &#124;
 <a href="classgridfire_1_1_reaction-members.html">List of all members</a>  </div>
-  <div class="headertitle"><div class="title">gridfire::Reaction Class Reference</div></div>
+  <div class="headertitle"><div class="title">gridfire::Reaction Class Reference<span class="mlabels"><span class="mlabel abstract">abstract</span></span></div></div>
 </div><!--header-->
 <div class="contents">
 
@@ -119,131 +117,83 @@ Inheritance diagram for gridfire::Reaction:</div>
  <div class="center">
   <img src="classgridfire_1_1_reaction.png" usemap="#gridfire::Reaction_map" alt=""/>
   <map id="gridfire::Reaction_map" name="gridfire::Reaction_map">
-<area href="classgridfire_1_1reaction_1_1_logical_reaction.html" title="Represents a &quot;logical&quot; reaction that aggregates rates from multiple sources." alt="gridfire::reaction::LogicalReaction" shape="rect" coords="0,56,201,80"/>
+<area href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html" title="Concrete Reaction representing a single weak process (beta±, e−/e+ capture)." alt="gridfire::rates::weak::WeakReaction" shape="rect" coords="0,56,243,80"/>
+<area href="classgridfire_1_1reaction_1_1_reaclib_reaction.html" alt="gridfire::reaction::ReaclibReaction" shape="rect" coords="253,56,496,80"/>
+<area href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html" title="Represents a &quot;logical&quot; reaction that aggregates rates from multiple sources." alt="gridfire::reaction::LogicalReaclibReaction" shape="rect" coords="253,112,496,136"/>
   </map>
 </div></div>
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
 Public Member Functions</h2></td></tr>
 <tr class="memitem:ab1860df84843be70f97469761e11ab6a" id="r_ab1860df84843be70f97469761e11ab6a"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab1860df84843be70f97469761e11ab6a">~Reaction</a> ()=default</td></tr>
-<tr class="memdesc:ab1860df84843be70f97469761e11ab6a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="memdesc:ab1860df84843be70f97469761e11ab6a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for correct polymorphic cleanup.  <br /></td></tr>
 <tr class="separator:ab1860df84843be70f97469761e11ab6a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7dff19d387e771d96c26e98d75ee9d5c" id="r_a7dff19d387e771d96c26e98d75ee9d5c"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7dff19d387e771d96c26e98d75ee9d5c">Reaction</a> (const std::string_view <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905">id</a>, const std::string_view <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97">peName</a>, const int <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629">chapter</a>, const std::vector&lt; fourdst::atomic::Species &gt; &amp;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b">reactants</a>, const std::vector&lt; fourdst::atomic::Species &gt; &amp;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02">products</a>, const double <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8">qValue</a>, const std::string_view label, const RateCoefficientSet &amp;sets, const bool reverse=false)</td></tr>
-<tr class="memdesc:a7dff19d387e771d96c26e98d75ee9d5c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> object.  <br /></td></tr>
-<tr class="separator:a7dff19d387e771d96c26e98d75ee9d5c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad81e9b2a1773470059ca6989c60556ec" id="r_ad81e9b2a1773470059ca6989c60556ec"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad81e9b2a1773470059ca6989c60556ec">calculate_rate</a> (const double T9) const</td></tr>
-<tr class="memdesc:ad81e9b2a1773470059ca6989c60556ec"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the reaction rate for a given temperature.  <br /></td></tr>
-<tr class="separator:ad81e9b2a1773470059ca6989c60556ec"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a735192a42f72cd68f289493753e1a616" id="r_a735192a42f72cd68f289493753e1a616"><td class="memItemLeft" align="right" valign="top">virtual CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a735192a42f72cd68f289493753e1a616">calculate_rate</a> (const CppAD::AD&lt; double &gt; T9) const</td></tr>
-<tr class="memdesc:a735192a42f72cd68f289493753e1a616"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the reaction rate for a given temperature using CppAD types.  <br /></td></tr>
-<tr class="separator:a735192a42f72cd68f289493753e1a616"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3a8ba9212d76d5ce51f20df6892c6061" id="r_a3a8ba9212d76d5ce51f20df6892c6061"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3a8ba9212d76d5ce51f20df6892c6061">calculate_forward_rate_log_derivative</a> (const double T9) const</td></tr>
-<tr class="separator:a3a8ba9212d76d5ce51f20df6892c6061"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a78f42664cc957e266b6cf15fda09be97" id="r_a78f42664cc957e266b6cf15fda09be97"><td class="memItemLeft" align="right" valign="top">virtual std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a78f42664cc957e266b6cf15fda09be97">peName</a> () const</td></tr>
-<tr class="memdesc:a78f42664cc957e266b6cf15fda09be97"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the reaction name in (projectile, ejectile) notation.  <br /></td></tr>
-<tr class="separator:a78f42664cc957e266b6cf15fda09be97"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5cb438adfefb640e4bc58e09053bd629" id="r_a5cb438adfefb640e4bc58e09053bd629"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5cb438adfefb640e4bc58e09053bd629">chapter</a> () const</td></tr>
-<tr class="memdesc:a5cb438adfefb640e4bc58e09053bd629"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the REACLIB chapter number.  <br /></td></tr>
-<tr class="separator:a5cb438adfefb640e4bc58e09053bd629"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a410e2ab0784ad751f82bbe55be603db0" id="r_a410e2ab0784ad751f82bbe55be603db0"><td class="memItemLeft" align="right" valign="top">std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a410e2ab0784ad751f82bbe55be603db0">sourceLabel</a> () const</td></tr>
-<tr class="memdesc:a410e2ab0784ad751f82bbe55be603db0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the source label for the rate data.  <br /></td></tr>
-<tr class="separator:a410e2ab0784ad751f82bbe55be603db0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a85968076e686e67763f4fdf4f72a892e" id="r_a85968076e686e67763f4fdf4f72a892e"><td class="memItemLeft" align="right" valign="top">const RateCoefficientSet &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a85968076e686e67763f4fdf4f72a892e">rateCoefficients</a> () const</td></tr>
-<tr class="memdesc:a85968076e686e67763f4fdf4f72a892e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the set of rate coefficients.  <br /></td></tr>
-<tr class="separator:a85968076e686e67763f4fdf4f72a892e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab92785f331a446e51a0960b75d60b37b" id="r_ab92785f331a446e51a0960b75d60b37b"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab92785f331a446e51a0960b75d60b37b">contains</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
-<tr class="memdesc:ab92785f331a446e51a0960b75d60b37b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the reaction involves a given species as a reactant or product.  <br /></td></tr>
-<tr class="separator:ab92785f331a446e51a0960b75d60b37b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abbe243affa61ba9b2cd2a7b905cd5e45" id="r_abbe243affa61ba9b2cd2a7b905cd5e45"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abbe243affa61ba9b2cd2a7b905cd5e45">contains_reactant</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
-<tr class="memdesc:abbe243affa61ba9b2cd2a7b905cd5e45"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the reaction involves a given species as a reactant.  <br /></td></tr>
-<tr class="separator:abbe243affa61ba9b2cd2a7b905cd5e45"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a074d3cd2421fd5d0133e47f0522403e2" id="r_a074d3cd2421fd5d0133e47f0522403e2"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a074d3cd2421fd5d0133e47f0522403e2">contains_product</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
-<tr class="memdesc:a074d3cd2421fd5d0133e47f0522403e2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the reaction involves a given species as a product.  <br /></td></tr>
-<tr class="separator:a074d3cd2421fd5d0133e47f0522403e2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7dc8fda87e0581fde6da0a81cf4d7224" id="r_a7dc8fda87e0581fde6da0a81cf4d7224"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7dc8fda87e0581fde6da0a81cf4d7224">all_species</a> () const</td></tr>
-<tr class="memdesc:a7dc8fda87e0581fde6da0a81cf4d7224"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a set of all unique species involved in the reaction.  <br /></td></tr>
-<tr class="separator:a7dc8fda87e0581fde6da0a81cf4d7224"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a855ea65e4b62fb0cddc550424a4bc923" id="r_a855ea65e4b62fb0cddc550424a4bc923"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a855ea65e4b62fb0cddc550424a4bc923">reactant_species</a> () const</td></tr>
-<tr class="memdesc:a855ea65e4b62fb0cddc550424a4bc923"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a set of all unique reactant species.  <br /></td></tr>
-<tr class="separator:a855ea65e4b62fb0cddc550424a4bc923"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a01c67726efbaa2ff8e4d6f2c965f485c" id="r_a01c67726efbaa2ff8e4d6f2c965f485c"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a01c67726efbaa2ff8e4d6f2c965f485c">product_species</a> () const</td></tr>
-<tr class="memdesc:a01c67726efbaa2ff8e4d6f2c965f485c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a set of all unique product species.  <br /></td></tr>
-<tr class="separator:a01c67726efbaa2ff8e4d6f2c965f485c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1d3c8ab6d55155f9a21ad80ed8b9ef97" id="r_a1d3c8ab6d55155f9a21ad80ed8b9ef97"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1d3c8ab6d55155f9a21ad80ed8b9ef97">num_species</a> () const</td></tr>
-<tr class="memdesc:a1d3c8ab6d55155f9a21ad80ed8b9ef97"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the number of unique species involved in the reaction.  <br /></td></tr>
-<tr class="separator:a1d3c8ab6d55155f9a21ad80ed8b9ef97"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaf0c94db6536b4a9ac1ec08a5c8f01ac" id="r_aaf0c94db6536b4a9ac1ec08a5c8f01ac"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aaf0c94db6536b4a9ac1ec08a5c8f01ac">stoichiometry</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
-<tr class="memdesc:aaf0c94db6536b4a9ac1ec08a5c8f01ac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the stoichiometric coefficient for a given species.  <br /></td></tr>
-<tr class="separator:aaf0c94db6536b4a9ac1ec08a5c8f01ac"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad359c06d7196c1a7a955a7b66a51dbe3" id="r_ad359c06d7196c1a7a955a7b66a51dbe3"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, int &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad359c06d7196c1a7a955a7b66a51dbe3">stoichiometry</a> () const</td></tr>
-<tr class="memdesc:ad359c06d7196c1a7a955a7b66a51dbe3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a map of all species to their stoichiometric coefficients.  <br /></td></tr>
-<tr class="separator:ad359c06d7196c1a7a955a7b66a51dbe3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a084c38181408ed5e6fa2a2dd4d0ec905" id="r_a084c38181408ed5e6fa2a2dd4d0ec905"><td class="memItemLeft" align="right" valign="top">std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a084c38181408ed5e6fa2a2dd4d0ec905">id</a> () const</td></tr>
-<tr class="memdesc:a084c38181408ed5e6fa2a2dd4d0ec905"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the unique identifier of the reaction.  <br /></td></tr>
-<tr class="separator:a084c38181408ed5e6fa2a2dd4d0ec905"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abda0b4e4313e6d4ba57acf37d5976fb8" id="r_abda0b4e4313e6d4ba57acf37d5976fb8"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abda0b4e4313e6d4ba57acf37d5976fb8">qValue</a> () const</td></tr>
-<tr class="memdesc:abda0b4e4313e6d4ba57acf37d5976fb8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the Q-value of the reaction.  <br /></td></tr>
-<tr class="separator:abda0b4e4313e6d4ba57acf37d5976fb8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0b543e9b0bb4a21efe4b29780d9bdf5b" id="r_a0b543e9b0bb4a21efe4b29780d9bdf5b"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0b543e9b0bb4a21efe4b29780d9bdf5b">reactants</a> () const</td></tr>
-<tr class="memdesc:a0b543e9b0bb4a21efe4b29780d9bdf5b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the vector of reactant species.  <br /></td></tr>
-<tr class="separator:a0b543e9b0bb4a21efe4b29780d9bdf5b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6e2ff61b9e8409f2a561663628b8ce02" id="r_a6e2ff61b9e8409f2a561663628b8ce02"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6e2ff61b9e8409f2a561663628b8ce02">products</a> () const</td></tr>
-<tr class="memdesc:a6e2ff61b9e8409f2a561663628b8ce02"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the vector of product species.  <br /></td></tr>
-<tr class="separator:a6e2ff61b9e8409f2a561663628b8ce02"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa67d05dfabf007c1acad34052d9a1dba" id="r_aa67d05dfabf007c1acad34052d9a1dba"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa67d05dfabf007c1acad34052d9a1dba">is_reverse</a> () const</td></tr>
-<tr class="memdesc:aa67d05dfabf007c1acad34052d9a1dba"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if this is a reverse reaction rate.  <br /></td></tr>
-<tr class="separator:aa67d05dfabf007c1acad34052d9a1dba"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa1d71e38fc55ae691dbb9ec459a612a5" id="r_aa1d71e38fc55ae691dbb9ec459a612a5"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa1d71e38fc55ae691dbb9ec459a612a5">excess_energy</a> () const</td></tr>
-<tr class="memdesc:aa1d71e38fc55ae691dbb9ec459a612a5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the excess energy from the mass difference of reactants and products.  <br /></td></tr>
-<tr class="separator:aa1d71e38fc55ae691dbb9ec459a612a5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac426457cf0a54a15b206549422083bac" id="r_ac426457cf0a54a15b206549422083bac"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac426457cf0a54a15b206549422083bac">operator==</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;other) const</td></tr>
-<tr class="memdesc:ac426457cf0a54a15b206549422083bac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compares this reaction with another for equality based on their IDs.  <br /></td></tr>
-<tr class="separator:ac426457cf0a54a15b206549422083bac"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2f1c115a99bc7c477a2e858ff18b1b51" id="r_a2f1c115a99bc7c477a2e858ff18b1b51"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2f1c115a99bc7c477a2e858ff18b1b51">operator!=</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;other) const</td></tr>
-<tr class="memdesc:a2f1c115a99bc7c477a2e858ff18b1b51"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compares this reaction with another for inequality.  <br /></td></tr>
-<tr class="separator:a2f1c115a99bc7c477a2e858ff18b1b51"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af6c20e6d03a2d9f87632f71a90b88cb5" id="r_af6c20e6d03a2d9f87632f71a90b88cb5"><td class="memItemLeft" align="right" valign="top">uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af6c20e6d03a2d9f87632f71a90b88cb5">hash</a> (uint64_t seed=0) const</td></tr>
-<tr class="memdesc:af6c20e6d03a2d9f87632f71a90b88cb5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes a hash for the reaction based on its ID.  <br /></td></tr>
-<tr class="separator:af6c20e6d03a2d9f87632f71a90b88cb5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pro-attribs" name="pro-attribs"></a>
-Protected Attributes</h2></td></tr>
-<tr class="memitem:a7044d0a1d59d85502ce554e4ec2167e4" id="r_a7044d0a1d59d85502ce554e4ec2167e4"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7044d0a1d59d85502ce554e4ec2167e4">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
-<tr class="separator:a7044d0a1d59d85502ce554e4ec2167e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5c685e5a736b51799e5b9f6746c4126b" id="r_a5c685e5a736b51799e5b9f6746c4126b"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5c685e5a736b51799e5b9f6746c4126b">m_id</a></td></tr>
-<tr class="memdesc:a5c685e5a736b51799e5b9f6746c4126b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Unique identifier for the reaction (e.g., "h1+h1=&gt;h2+e+nu").  <br /></td></tr>
-<tr class="separator:a5c685e5a736b51799e5b9f6746c4126b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6124aa9fc2306349e1dd879a37923248" id="r_a6124aa9fc2306349e1dd879a37923248"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6124aa9fc2306349e1dd879a37923248">m_peName</a></td></tr>
-<tr class="memdesc:a6124aa9fc2306349e1dd879a37923248"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name of the reaction in (projectile, ejectile) notation (e.g. "p(p,g)d").  <br /></td></tr>
-<tr class="separator:a6124aa9fc2306349e1dd879a37923248"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a16f9cbb6269817099d3dc07d4e63da7b" id="r_a16f9cbb6269817099d3dc07d4e63da7b"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a16f9cbb6269817099d3dc07d4e63da7b">m_chapter</a></td></tr>
-<tr class="memdesc:a16f9cbb6269817099d3dc07d4e63da7b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Chapter number from the REACLIB database, defining the reaction structure.  <br /></td></tr>
-<tr class="separator:a16f9cbb6269817099d3dc07d4e63da7b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a59122a2898bb9af640cc3e9aeb49028b" id="r_a59122a2898bb9af640cc3e9aeb49028b"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a59122a2898bb9af640cc3e9aeb49028b">m_qValue</a> = 0.0</td></tr>
-<tr class="memdesc:a59122a2898bb9af640cc3e9aeb49028b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Q-value of the reaction in MeV.  <br /></td></tr>
-<tr class="separator:a59122a2898bb9af640cc3e9aeb49028b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a87a065b3c7806bcdb5eadb7de2978a11" id="r_a87a065b3c7806bcdb5eadb7de2978a11"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a87a065b3c7806bcdb5eadb7de2978a11">m_reactants</a></td></tr>
-<tr class="memdesc:a87a065b3c7806bcdb5eadb7de2978a11"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reactants of the reaction.  <br /></td></tr>
-<tr class="separator:a87a065b3c7806bcdb5eadb7de2978a11"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4b5607ed413acdf29539b8a57461e49e" id="r_a4b5607ed413acdf29539b8a57461e49e"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4b5607ed413acdf29539b8a57461e49e">m_products</a></td></tr>
-<tr class="memdesc:a4b5607ed413acdf29539b8a57461e49e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Products of the reaction.  <br /></td></tr>
-<tr class="separator:a4b5607ed413acdf29539b8a57461e49e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0185c6be5465d113f25e00aee1297cd6" id="r_a0185c6be5465d113f25e00aee1297cd6"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0185c6be5465d113f25e00aee1297cd6">m_sourceLabel</a></td></tr>
-<tr class="memdesc:a0185c6be5465d113f25e00aee1297cd6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Source label for the rate data (e.g., "wc12w", "st08").  <br /></td></tr>
-<tr class="separator:a0185c6be5465d113f25e00aee1297cd6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa61a9a024d7c4ff66a351ccd0277ec72" id="r_aa61a9a024d7c4ff66a351ccd0277ec72"><td class="memItemLeft" align="right" valign="top">RateCoefficientSet&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa61a9a024d7c4ff66a351ccd0277ec72">m_rateCoefficients</a></td></tr>
-<tr class="memdesc:aa61a9a024d7c4ff66a351ccd0277ec72"><td class="mdescLeft">&#160;</td><td class="mdescRight">The seven rate coefficients.  <br /></td></tr>
-<tr class="separator:aa61a9a024d7c4ff66a351ccd0277ec72"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0b0b9ac498080aae91ffd466d1ae85a9" id="r_a0b0b9ac498080aae91ffd466d1ae85a9"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0b0b9ac498080aae91ffd466d1ae85a9">m_reverse</a> = false</td></tr>
-<tr class="memdesc:a0b0b9ac498080aae91ffd466d1ae85a9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Flag indicating if this is a reverse reaction rate.  <br /></td></tr>
-<tr class="separator:a0b0b9ac498080aae91ffd466d1ae85a9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
-Private Member Functions</h2></td></tr>
-<tr class="memitem:a648b9ed6108bed2469dc028fb7e351af" id="r_a648b9ed6108bed2469dc028fb7e351af"><td class="memTemplParams" colspan="2">template&lt;typename T&gt; </td></tr>
-<tr class="memitem:a648b9ed6108bed2469dc028fb7e351af"><td class="memTemplItemLeft" align="right" valign="top">T&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#a648b9ed6108bed2469dc028fb7e351af">calculate_rate</a> (const T T9) const</td></tr>
-<tr class="memdesc:a648b9ed6108bed2469dc028fb7e351af"><td class="mdescLeft">&#160;</td><td class="mdescRight">Template implementation for calculating the reaction rate.  <br /></td></tr>
-<tr class="separator:a648b9ed6108bed2469dc028fb7e351af"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abb3e2b9c5404f45fc5656eeac1d06a6c" id="r_abb3e2b9c5404f45fc5656eeac1d06a6c"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abb3e2b9c5404f45fc5656eeac1d06a6c">calculate_rate</a> (double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const=0</td></tr>
+<tr class="memdesc:abb3e2b9c5404f45fc5656eeac1d06a6c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute the temperature- and composition-dependent reaction rate.  <br /></td></tr>
+<tr class="separator:abb3e2b9c5404f45fc5656eeac1d06a6c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8cbc768819bea8497a7b9fa644b8fd65" id="r_a8cbc768819bea8497a7b9fa644b8fd65"><td class="memItemLeft" align="right" valign="top">virtual CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8cbc768819bea8497a7b9fa644b8fd65">calculate_rate</a> (CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const=0</td></tr>
+<tr class="memdesc:a8cbc768819bea8497a7b9fa644b8fd65"><td class="mdescLeft">&#160;</td><td class="mdescRight">AD-enabled reaction rate for algorithmic differentiation.  <br /></td></tr>
+<tr class="separator:a8cbc768819bea8497a7b9fa644b8fd65"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a768329002a4f0b8604b1aa51d56b5d1b" id="r_a768329002a4f0b8604b1aa51d56b5d1b"><td class="memItemLeft" align="right" valign="top">virtual std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a768329002a4f0b8604b1aa51d56b5d1b">id</a> () const=0</td></tr>
+<tr class="memdesc:a768329002a4f0b8604b1aa51d56b5d1b"><td class="mdescLeft">&#160;</td><td class="mdescRight">A stable, unique identifier for this reaction instance.  <br /></td></tr>
+<tr class="separator:a768329002a4f0b8604b1aa51d56b5d1b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0c533797f18c2fe4945f1afb3fb06d5d" id="r_a0c533797f18c2fe4945f1afb3fb06d5d"><td class="memItemLeft" align="right" valign="top">virtual const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0c533797f18c2fe4945f1afb3fb06d5d">reactants</a> () const=0</td></tr>
+<tr class="memdesc:a0c533797f18c2fe4945f1afb3fb06d5d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Ordered list of reactant species.  <br /></td></tr>
+<tr class="separator:a0c533797f18c2fe4945f1afb3fb06d5d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac2918935929030e8d218dc8d107a78f9" id="r_ac2918935929030e8d218dc8d107a78f9"><td class="memItemLeft" align="right" valign="top">virtual const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac2918935929030e8d218dc8d107a78f9">products</a> () const=0</td></tr>
+<tr class="memdesc:ac2918935929030e8d218dc8d107a78f9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Ordered list of product species.  <br /></td></tr>
+<tr class="separator:ac2918935929030e8d218dc8d107a78f9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adaeb5d72faf7d55d4e26f6e1fcba21c1" id="r_adaeb5d72faf7d55d4e26f6e1fcba21c1"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#adaeb5d72faf7d55d4e26f6e1fcba21c1">contains</a> (const fourdst::atomic::Species &amp;species) const=0</td></tr>
+<tr class="memdesc:adaeb5d72faf7d55d4e26f6e1fcba21c1"><td class="mdescLeft">&#160;</td><td class="mdescRight">True if the species appears as a reactant or a product.  <br /></td></tr>
+<tr class="separator:adaeb5d72faf7d55d4e26f6e1fcba21c1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afca3afba45a3db79980c8fe18c87c750" id="r_afca3afba45a3db79980c8fe18c87c750"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afca3afba45a3db79980c8fe18c87c750">contains_reactant</a> (const fourdst::atomic::Species &amp;species) const=0</td></tr>
+<tr class="memdesc:afca3afba45a3db79980c8fe18c87c750"><td class="mdescLeft">&#160;</td><td class="mdescRight">True if the species appears among the reactants.  <br /></td></tr>
+<tr class="separator:afca3afba45a3db79980c8fe18c87c750"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5a17ca61d069749960e5a83e58c0b8a1" id="r_a5a17ca61d069749960e5a83e58c0b8a1"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5a17ca61d069749960e5a83e58c0b8a1">contains_product</a> (const fourdst::atomic::Species &amp;species) const=0</td></tr>
+<tr class="memdesc:a5a17ca61d069749960e5a83e58c0b8a1"><td class="mdescLeft">&#160;</td><td class="mdescRight">True if the species appears among the products.  <br /></td></tr>
+<tr class="separator:a5a17ca61d069749960e5a83e58c0b8a1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a640b0bdbed9ed7c2a2e9880ddbcafc1d" id="r_a640b0bdbed9ed7c2a2e9880ddbcafc1d"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a640b0bdbed9ed7c2a2e9880ddbcafc1d">is_reverse</a> () const=0</td></tr>
+<tr class="memdesc:a640b0bdbed9ed7c2a2e9880ddbcafc1d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Whether this object represents a reverse (backward) rate.  <br /></td></tr>
+<tr class="separator:a640b0bdbed9ed7c2a2e9880ddbcafc1d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ace0b2bee91702e0ab97b6fc74999d6f0" id="r_ace0b2bee91702e0ab97b6fc74999d6f0"><td class="memItemLeft" align="right" valign="top">virtual std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ace0b2bee91702e0ab97b6fc74999d6f0">all_species</a> () const=0</td></tr>
+<tr class="memdesc:ace0b2bee91702e0ab97b6fc74999d6f0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of all unique species appearing in the reaction.  <br /></td></tr>
+<tr class="separator:ace0b2bee91702e0ab97b6fc74999d6f0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4be8440aa7e79eab1d44b5d83bcdab79" id="r_a4be8440aa7e79eab1d44b5d83bcdab79"><td class="memItemLeft" align="right" valign="top">virtual std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4be8440aa7e79eab1d44b5d83bcdab79">reactant_species</a> () const=0</td></tr>
+<tr class="memdesc:a4be8440aa7e79eab1d44b5d83bcdab79"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of unique reactant species.  <br /></td></tr>
+<tr class="separator:a4be8440aa7e79eab1d44b5d83bcdab79"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac2306d841bad605b7c9ae104397cec0f" id="r_ac2306d841bad605b7c9ae104397cec0f"><td class="memItemLeft" align="right" valign="top">virtual std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac2306d841bad605b7c9ae104397cec0f">product_species</a> () const=0</td></tr>
+<tr class="memdesc:ac2306d841bad605b7c9ae104397cec0f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of unique product species.  <br /></td></tr>
+<tr class="separator:ac2306d841bad605b7c9ae104397cec0f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a348aae35a6c82194ef5387278419e0e6" id="r_a348aae35a6c82194ef5387278419e0e6"><td class="memItemLeft" align="right" valign="top">virtual size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a348aae35a6c82194ef5387278419e0e6">num_species</a> () const=0</td></tr>
+<tr class="memdesc:a348aae35a6c82194ef5387278419e0e6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of unique species involved in the reaction.  <br /></td></tr>
+<tr class="separator:a348aae35a6c82194ef5387278419e0e6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a55b7f61d9bde45f2ca485c1b07a05950" id="r_a55b7f61d9bde45f2ca485c1b07a05950"><td class="memItemLeft" align="right" valign="top">virtual std::unordered_map&lt; fourdst::atomic::Species, int &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a55b7f61d9bde45f2ca485c1b07a05950">stoichiometry</a> () const=0</td></tr>
+<tr class="memdesc:a55b7f61d9bde45f2ca485c1b07a05950"><td class="mdescLeft">&#160;</td><td class="mdescRight">Full stoichiometry map for this reaction.  <br /></td></tr>
+<tr class="separator:a55b7f61d9bde45f2ca485c1b07a05950"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af0a893603aa88f7d7d205b9b969af487" id="r_af0a893603aa88f7d7d205b9b969af487"><td class="memItemLeft" align="right" valign="top">virtual int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af0a893603aa88f7d7d205b9b969af487">stoichiometry</a> (const fourdst::atomic::Species &amp;species) const=0</td></tr>
+<tr class="memdesc:af0a893603aa88f7d7d205b9b969af487"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stoichiometric coefficient for a particular species.  <br /></td></tr>
+<tr class="separator:af0a893603aa88f7d7d205b9b969af487"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a41b1c16f499c9255251ed43725cf698c" id="r_a41b1c16f499c9255251ed43725cf698c"><td class="memItemLeft" align="right" valign="top">virtual uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a41b1c16f499c9255251ed43725cf698c">hash</a> (uint64_t seed) const=0</td></tr>
+<tr class="memdesc:a41b1c16f499c9255251ed43725cf698c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stable content-based hash for this reaction.  <br /></td></tr>
+<tr class="separator:a41b1c16f499c9255251ed43725cf698c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a11c714febaf818f1d4d6c19a064d707e" id="r_a11c714febaf818f1d4d6c19a064d707e"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a11c714febaf818f1d4d6c19a064d707e">qValue</a> () const=0</td></tr>
+<tr class="memdesc:a11c714febaf818f1d4d6c19a064d707e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Q-value of the reaction (typically MeV), positive if exothermic.  <br /></td></tr>
+<tr class="separator:a11c714febaf818f1d4d6c19a064d707e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae66b446c98add7e00a1d960f4e7c60dd" id="r_ae66b446c98add7e00a1d960f4e7c60dd"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae66b446c98add7e00a1d960f4e7c60dd">calculate_energy_generation_rate</a> (const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td></tr>
+<tr class="memdesc:ae66b446c98add7e00a1d960f4e7c60dd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convenience: energy generation rate from this reaction (double version).  <br /></td></tr>
+<tr class="separator:ae66b446c98add7e00a1d960f4e7c60dd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4282f85c34d6db1994c07e7a40f66d80" id="r_a4282f85c34d6db1994c07e7a40f66d80"><td class="memItemLeft" align="right" valign="top">virtual CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4282f85c34d6db1994c07e7a40f66d80">calculate_energy_generation_rate</a> (const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td></tr>
+<tr class="memdesc:a4282f85c34d6db1994c07e7a40f66d80"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convenience: AD-enabled energy generation rate (AD version).  <br /></td></tr>
+<tr class="separator:a4282f85c34d6db1994c07e7a40f66d80"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aec9859c030364e1d4a740197514731db" id="r_aec9859c030364e1d4a740197514731db"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aec9859c030364e1d4a740197514731db">calculate_log_rate_partial_deriv_wrt_T9</a> (double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;comp) const=0</td></tr>
+<tr class="memdesc:aec9859c030364e1d4a740197514731db"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logarithmic partial derivative of the rate with respect to temperature.  <br /></td></tr>
+<tr class="separator:aec9859c030364e1d4a740197514731db"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a186856dc2ce85d8cc4db43c7164b6afa" id="r_a186856dc2ce85d8cc4db43c7164b6afa"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a186856dc2ce85d8cc4db43c7164b6afa">type</a> () const=0</td></tr>
+<tr class="memdesc:a186856dc2ce85d8cc4db43c7164b6afa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Category of this reaction (e.g., REACLIB, WEAK, LOGICAL_REACLIB).  <br /></td></tr>
+<tr class="separator:a186856dc2ce85d8cc4db43c7164b6afa"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a588a8c19970463d97f5aa333fcd312dc" id="r_a588a8c19970463d97f5aa333fcd312dc"><td class="memItemLeft" align="right" valign="top">virtual std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a588a8c19970463d97f5aa333fcd312dc">clone</a> () const=0</td></tr>
+<tr class="memdesc:a588a8c19970463d97f5aa333fcd312dc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Polymorphic deep copy.  <br /></td></tr>
+<tr class="separator:a588a8c19970463d97f5aa333fcd312dc"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="friends" name="friends"></a>
 Friends</h2></td></tr>
@@ -254,11 +204,12 @@ Friends</h2></td></tr>
 <div class="textblock"><p>Represents a single nuclear reaction from a specific data source. </p>
 <p>This class encapsulates all properties of a single nuclear reaction as defined in formats like REACLIB, including reactants, products, Q-value, and rate coefficients from a particular evaluation (source).</p>
 <p>Example: </p><div class="fragment"><div class="line"><span class="comment">// Assuming species and rate coefficients are defined</span></div>
-<div class="line"><a class="code hl_function" href="#a7dff19d387e771d96c26e98d75ee9d5c">Reaction</a> p_gamma_d(</div>
+<div class="line"><a class="code hl_class" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> p_gamma_d(</div>
 <div class="line">    <span class="stringliteral">&quot;H_1_H_1_to_H_2&quot;</span>, <span class="stringliteral">&quot;p(p,g)d&quot;</span>, 1, {H_1, H_1}, {H_2}, 5.493, <span class="stringliteral">&quot;st08&quot;</span>, rate_coeffs</div>
 <div class="line">);</div>
-<div class="line"><span class="keywordtype">double</span> rate = p_gamma_d.calculate_rate(0.1); <span class="comment">// T9 = 0.1</span></div>
-<div class="ttc" id="aclassgridfire_1_1_reaction_html_a7dff19d387e771d96c26e98d75ee9d5c"><div class="ttname"><a href="#a7dff19d387e771d96c26e98d75ee9d5c">gridfire::Reaction::Reaction</a></div><div class="ttdeci">Reaction(const std::string_view id, const std::string_view peName, const int chapter, const std::vector&lt; fourdst::atomic::Species &gt; &amp;reactants, const std::vector&lt; fourdst::atomic::Species &gt; &amp;products, const double qValue, const std::string_view label, const RateCoefficientSet &amp;sets, const bool reverse=false)</div><div class="ttdoc">Constructs a Reaction object.</div><div class="ttdef"><b>Definition</b> reaction.cpp:19</div></div>
+<div class="line"><span class="keywordtype">double</span> rate = p_gamma_d.<a class="code hl_function" href="classgridfire_1_1reaction_1_1_reaction.html#a83c121480533593adfd68c4a67a649f1">calculate_rate</a>(0.1); <span class="comment">// T9 = 0.1</span></div>
+<div class="ttc" id="aclassgridfire_1_1reaction_1_1_reaction_html"><div class="ttname"><a href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></div><div class="ttdoc">Represents a single nuclear reaction from a specific data source.</div><div class="ttdef"><b>Definition</b> reaction.h:78</div></div>
+<div class="ttc" id="aclassgridfire_1_1reaction_1_1_reaction_html_a83c121480533593adfd68c4a67a649f1"><div class="ttname"><a href="classgridfire_1_1reaction_1_1_reaction.html#a83c121480533593adfd68c4a67a649f1">gridfire::reaction::Reaction::calculate_rate</a></div><div class="ttdeci">virtual double calculate_rate(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const =0</div><div class="ttdoc">Compute the temperature- and composition-dependent reaction rate.</div></div>
 </div><!-- fragment --> </div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
 <a id="ab1860df84843be70f97469761e11ab6a" name="ab1860df84843be70f97469761e11ab6a"></a>
 <h2 class="memtitle"><span class="permalink"><a href="#ab1860df84843be70f97469761e11ab6a">&#9670;&#160;</a></span>~Reaction()</h2>
@@ -283,85 +234,13 @@ Friends</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p>Virtual destructor. </p>
-
-</div>
-</div>
-<a id="a7dff19d387e771d96c26e98d75ee9d5c" name="a7dff19d387e771d96c26e98d75ee9d5c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7dff19d387e771d96c26e98d75ee9d5c">&#9670;&#160;</a></span>Reaction()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">gridfire::reaction::Reaction::Reaction </td>
-          <td>(</td>
-          <td class="paramtype">const std::string_view</td>          <td class="paramname"><span class="paramname"><em>id</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const std::string_view</td>          <td class="paramname"><span class="paramname"><em>peName</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>chapter</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>reactants</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>products</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>qValue</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const std::string_view</td>          <td class="paramname"><span class="paramname"><em>label</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const RateCoefficientSet &amp;</td>          <td class="paramname"><span class="paramname"><em>sets</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const bool</td>          <td class="paramname"><span class="paramname"><em>reverse</em></span><span class="paramdefsep"> = </span><span class="paramdefval">false</span>&#160;)</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Constructs a <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> object. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">id</td><td>A unique identifier for the reaction. </td></tr>
-    <tr><td class="paramname">peName</td><td>The name in (projectile, ejectile) notation (e.g., "p(p,g)d"). </td></tr>
-    <tr><td class="paramname">chapter</td><td>The REACLIB chapter number, defining reaction structure. </td></tr>
-    <tr><td class="paramname">reactants</td><td>A vector of reactant species. </td></tr>
-    <tr><td class="paramname">products</td><td>A vector of product species. </td></tr>
-    <tr><td class="paramname">qValue</td><td>The Q-value of the reaction in MeV. </td></tr>
-    <tr><td class="paramname">label</td><td>The source label for the rate data (e.g., "wc12", "st08"). </td></tr>
-    <tr><td class="paramname">sets</td><td>The set of rate coefficients. </td></tr>
-    <tr><td class="paramname">reverse</td><td>True if this is a reverse reaction rate. </td></tr>
-  </table>
-  </dd>
-</dl>
+<p>Virtual destructor for correct polymorphic cleanup. </p>
 
 </div>
 </div>
 <h2 class="groupheader">Member Function Documentation</h2>
-<a id="a7dc8fda87e0581fde6da0a81cf4d7224" name="a7dc8fda87e0581fde6da0a81cf4d7224"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7dc8fda87e0581fde6da0a81cf4d7224">&#9670;&#160;</a></span>all_species()</h2>
+<a id="ace0b2bee91702e0ab97b6fc74999d6f0" name="ace0b2bee91702e0ab97b6fc74999d6f0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ace0b2bee91702e0ab97b6fc74999d6f0">&#9670;&#160;</a></span>all_species()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -370,7 +249,7 @@ Friends</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::unordered_set&lt; Species &gt; gridfire::reaction::Reaction::all_species </td>
+          <td class="memname">virtual std::unordered_set&lt; fourdst::atomic::Species &gt; gridfire::reaction::Reaction::all_species </td>
           <td>(</td>
           <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
           <td> const</td>
@@ -378,18 +257,18 @@ Friends</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Gets a set of all unique species involved in the reaction. </p>
-<dl class="section return"><dt>Returns</dt><dd>An unordered_set of all reactant and product species. </dd></dl>
+<p>Set of all unique species appearing in the reaction. </p>
+<dl class="section return"><dt>Returns</dt><dd>Unordered set of all reactants and products (no duplicates). </dd></dl>
 
 </div>
 </div>
-<a id="a3a8ba9212d76d5ce51f20df6892c6061" name="a3a8ba9212d76d5ce51f20df6892c6061"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3a8ba9212d76d5ce51f20df6892c6061">&#9670;&#160;</a></span>calculate_forward_rate_log_derivative()</h2>
+<a id="a4282f85c34d6db1994c07e7a40f66d80" name="a4282f85c34d6db1994c07e7a40f66d80"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4282f85c34d6db1994c07e7a40f66d80">&#9670;&#160;</a></span>calculate_energy_generation_rate() <span class="overload">[1/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -398,491 +277,34 @@ Friends</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">double gridfire::reaction::Reaction::calculate_forward_rate_log_derivative </td>
+          <td class="memname">virtual CppAD::AD&lt; double &gt; gridfire::reaction::Reaction::calculate_energy_generation_rate </td>
           <td>(</td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span></td><td>)</td>
-          <td> const</td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel virtual">virtual</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-</div>
-</div>
-<a id="a735192a42f72cd68f289493753e1a616" name="a735192a42f72cd68f289493753e1a616"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a735192a42f72cd68f289493753e1a616">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[1/3]</span></h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
         <tr>
-          <td class="memname">CppAD::AD&lt; double &gt; gridfire::reaction::Reaction::calculate_rate </td>
-          <td>(</td>
-          <td class="paramtype">const CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>T9</em></span></td><td>)</td>
-          <td> const</td>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
         </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel virtual">virtual</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Calculates the reaction rate for a given temperature using CppAD types. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K, as a CppAD::AD&lt;double&gt;. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The calculated reaction rate, as a CppAD::AD&lt;double&gt;. </dd></dl>
-
-</div>
-</div>
-<a id="ad81e9b2a1773470059ca6989c60556ec" name="ad81e9b2a1773470059ca6989c60556ec"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad81e9b2a1773470059ca6989c60556ec">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[2/3]</span></h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
         <tr>
-          <td class="memname">double gridfire::reaction::Reaction::calculate_rate </td>
-          <td>(</td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span></td><td>)</td>
-          <td> const</td>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
         </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel virtual">virtual</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Calculates the reaction rate for a given temperature. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The calculated reaction rate. </dd></dl>
-
-</div>
-</div>
-<a id="a648b9ed6108bed2469dc028fb7e351af" name="a648b9ed6108bed2469dc028fb7e351af"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a648b9ed6108bed2469dc028fb7e351af">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[3/3]</span></h2>
-
-<div class="memitem">
-<div class="memproto">
-<div class="memtemplate">
-template&lt;typename T&gt; </div>
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
         <tr>
-          <td class="memname">T gridfire::reaction::Reaction::calculate_rate </td>
-          <td>(</td>
-          <td class="paramtype">const T</td>          <td class="paramname"><span class="paramname"><em>T9</em></span></td><td>)</td>
-          <td> const</td>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
         </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel private">private</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Template implementation for calculating the reaction rate. </p>
-<dl class="tparams"><dt>Template Parameters</dt><dd>
-  <table class="tparams">
-    <tr><td class="paramname">T</td><td>The numeric type (double or CppAD::AD&lt;double&gt;). </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The calculated reaction rate.</dd></dl>
-<p>The rate is calculated using the standard REACLIB formula: <code>rate = exp(a0 + a1/T9 + a2/T9^(1/3) + a3*T9^(1/3) + a4*T9 + a5*T9^(5/3) + a6*ln(T9))</code> </p>
-
-</div>
-</div>
-<a id="a5cb438adfefb640e4bc58e09053bd629" name="a5cb438adfefb640e4bc58e09053bd629"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5cb438adfefb640e4bc58e09053bd629">&#9670;&#160;</a></span>chapter()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
         <tr>
-          <td class="memname">int gridfire::reaction::Reaction::chapter </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
         </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets the REACLIB chapter number. </p>
-<dl class="section return"><dt>Returns</dt><dd>The chapter number. </dd></dl>
-
-</div>
-</div>
-<a id="ab92785f331a446e51a0960b75d60b37b" name="ab92785f331a446e51a0960b75d60b37b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab92785f331a446e51a0960b75d60b37b">&#9670;&#160;</a></span>contains()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
         <tr>
-          <td class="memname">bool gridfire::reaction::Reaction::contains </td>
-          <td>(</td>
-          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Checks if the reaction involves a given species as a reactant or product. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the species is involved, false otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="a074d3cd2421fd5d0133e47f0522403e2" name="a074d3cd2421fd5d0133e47f0522403e2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a074d3cd2421fd5d0133e47f0522403e2">&#9670;&#160;</a></span>contains_product()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">bool gridfire::reaction::Reaction::contains_product </td>
-          <td>(</td>
-          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Checks if the reaction involves a given species as a product. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the species is a product, false otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="abbe243affa61ba9b2cd2a7b905cd5e45" name="abbe243affa61ba9b2cd2a7b905cd5e45"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abbe243affa61ba9b2cd2a7b905cd5e45">&#9670;&#160;</a></span>contains_reactant()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">bool gridfire::reaction::Reaction::contains_reactant </td>
-          <td>(</td>
-          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Checks if the reaction involves a given species as a reactant. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the species is a reactant, false otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="aa1d71e38fc55ae691dbb9ec459a612a5" name="aa1d71e38fc55ae691dbb9ec459a612a5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa1d71e38fc55ae691dbb9ec459a612a5">&#9670;&#160;</a></span>excess_energy()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double gridfire::reaction::Reaction::excess_energy </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Calculates the excess energy from the mass difference of reactants and products. </p>
-<dl class="section return"><dt>Returns</dt><dd>The excess energy in MeV. </dd></dl>
-
-</div>
-</div>
-<a id="af6c20e6d03a2d9f87632f71a90b88cb5" name="af6c20e6d03a2d9f87632f71a90b88cb5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af6c20e6d03a2d9f87632f71a90b88cb5">&#9670;&#160;</a></span>hash()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">uint64_t gridfire::reaction::Reaction::hash </td>
-          <td>(</td>
-          <td class="paramtype">uint64_t</td>          <td class="paramname"><span class="paramname"><em>seed</em></span><span class="paramdefsep"> = </span><span class="paramdefval">0</span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Computes a hash for the reaction based on its ID. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">seed</td><td>The seed for the hash function. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A 64-bit hash value.</dd></dl>
-<p>Uses the XXHash64 algorithm on the reaction's ID string. </p>
-
-</div>
-</div>
-<a id="a084c38181408ed5e6fa2a2dd4d0ec905" name="a084c38181408ed5e6fa2a2dd4d0ec905"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a084c38181408ed5e6fa2a2dd4d0ec905">&#9670;&#160;</a></span>id()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::string_view gridfire::reaction::Reaction::id </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets the unique identifier of the reaction. </p>
-<dl class="section return"><dt>Returns</dt><dd>The reaction ID. </dd></dl>
-
-</div>
-</div>
-<a id="aa67d05dfabf007c1acad34052d9a1dba" name="aa67d05dfabf007c1acad34052d9a1dba"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa67d05dfabf007c1acad34052d9a1dba">&#9670;&#160;</a></span>is_reverse()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">bool gridfire::reaction::Reaction::is_reverse </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Checks if this is a reverse reaction rate. </p>
-<dl class="section return"><dt>Returns</dt><dd>True if it is a reverse rate, false otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="a1d3c8ab6d55155f9a21ad80ed8b9ef97" name="a1d3c8ab6d55155f9a21ad80ed8b9ef97"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1d3c8ab6d55155f9a21ad80ed8b9ef97">&#9670;&#160;</a></span>num_species()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">size_t gridfire::reaction::Reaction::num_species </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets the number of unique species involved in the reaction. </p>
-<dl class="section return"><dt>Returns</dt><dd>The count of unique species. </dd></dl>
-
-</div>
-</div>
-<a id="a2f1c115a99bc7c477a2e858ff18b1b51" name="a2f1c115a99bc7c477a2e858ff18b1b51"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2f1c115a99bc7c477a2e858ff18b1b51">&#9670;&#160;</a></span>operator!=()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">bool gridfire::reaction::Reaction::operator!= </td>
-          <td>(</td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>other</em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Compares this reaction with another for inequality. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> to compare with. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the reactions are not equal. </dd></dl>
-
-</div>
-</div>
-<a id="ac426457cf0a54a15b206549422083bac" name="ac426457cf0a54a15b206549422083bac"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac426457cf0a54a15b206549422083bac">&#9670;&#160;</a></span>operator==()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">bool gridfire::reaction::Reaction::operator== </td>
-          <td>(</td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>other</em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Compares this reaction with another for equality based on their IDs. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> to compare with. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the reaction IDs are the same. </dd></dl>
-
-</div>
-</div>
-<a id="a78f42664cc957e266b6cf15fda09be97" name="a78f42664cc957e266b6cf15fda09be97"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a78f42664cc957e266b6cf15fda09be97">&#9670;&#160;</a></span>peName()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">virtual std::string_view gridfire::reaction::Reaction::peName </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>index_to_species_map</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -892,13 +314,25 @@ template&lt;typename T&gt; </div>
 </table>
 </div><div class="memdoc">
 
-<p>Gets the reaction name in (projectile, ejectile) notation. </p>
-<dl class="section return"><dt>Returns</dt><dd>The reaction name (e.g., "p(p,g)d"). </dd></dl>
+<p>Convenience: AD-enabled energy generation rate (AD version). </p>
+<p>Default implementation multiplies the AD rate by the reaction Q-value. Electron quantities (Ye, mue) are ignored in this default, so override if they contribute.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction as CppAD::AD&lt;double&gt; (ignored by default). </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential as CppAD::AD&lt;double&gt; (ignored by default). </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector as CppAD::AD&lt;double&gt; values. </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Mapping from state-vector index to Species. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Energy generation rate as CppAD::AD&lt;double&gt;. </dd></dl>
 
 </div>
 </div>
-<a id="a01c67726efbaa2ff8e4d6f2c965f485c" name="a01c67726efbaa2ff8e4d6f2c965f485c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a01c67726efbaa2ff8e4d6f2c965f485c">&#9670;&#160;</a></span>product_species()</h2>
+<a id="ae66b446c98add7e00a1d960f4e7c60dd" name="ae66b446c98add7e00a1d960f4e7c60dd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae66b446c98add7e00a1d960f4e7c60dd">&#9670;&#160;</a></span>calculate_energy_generation_rate() <span class="overload">[2/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -907,7 +341,257 @@ template&lt;typename T&gt; </div>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::unordered_set&lt; Species &gt; gridfire::reaction::Reaction::product_species </td>
+          <td class="memname">virtual double gridfire::reaction::Reaction::calculate_energy_generation_rate </td>
+          <td>(</td>
+          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>index_to_species_map</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Convenience: energy generation rate from this reaction (double version). </p>
+<p>Default implementation multiplies the scalar rate by the reaction Q-value. Electron quantities (Ye, mue) are ignored in this default, so override in derived classes if needed. Sign convention follows <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c" title="Q-value of the reaction (typically MeV), positive if exothermic.">qValue()</a>.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK (10^9 K). </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density (g cm^-3). </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction (ignored by default implementation). </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential (ignored by default implementation). </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector. </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Mapping from state-vector index to Species. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Energy generation rate, typically rate * <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c" title="Q-value of the reaction (typically MeV), positive if exothermic.">qValue()</a>. </dd></dl>
+
+</div>
+</div>
+<a id="aec9859c030364e1d4a740197514731db" name="aec9859c030364e1d4a740197514731db"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aec9859c030364e1d4a740197514731db">&#9670;&#160;</a></span>calculate_log_rate_partial_deriv_wrt_T9()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual double gridfire::reaction::Reaction::calculate_log_rate_partial_deriv_wrt_T9 </td>
+          <td>(</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logarithmic partial derivative of the rate with respect to temperature. </p>
+<p>Implementations return d(ln rate)/d(ln T9) or an equivalent measure (as documented by the concrete class), evaluated at the provided state.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK (10^9 K). </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density (g cm^-3). </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object providing composition in a convenient form. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The logarithmic temperature derivative of the rate. </dd></dl>
+
+</div>
+</div>
+<a id="a8cbc768819bea8497a7b9fa644b8fd65" name="a8cbc768819bea8497a7b9fa644b8fd65"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8cbc768819bea8497a7b9fa644b8fd65">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual CppAD::AD&lt; double &gt; gridfire::reaction::Reaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>index_to_species_map</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>AD-enabled reaction rate for algorithmic differentiation. </p>
+<p>This overload mirrors calculate_rate(double, ...) but operates on CppAD types to enable derivative calculations w.r.t. its inputs.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector as CppAD::AD&lt;double&gt; values. </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Mapping from state-vector index to Species, used to interpret Y. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The reaction rate as a CppAD::AD&lt;double&gt; value. </dd></dl>
+
+</div>
+</div>
+<a id="abb3e2b9c5404f45fc5656eeac1d06a6c" name="abb3e2b9c5404f45fc5656eeac1d06a6c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abb3e2b9c5404f45fc5656eeac1d06a6c">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual double gridfire::reaction::Reaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>index_to_species_map</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Compute the temperature- and composition-dependent reaction rate. </p>
+<p>This is the primary interface used by the network to obtain the rate of a single reaction at the given thermodynamic state and composition. The exact units and normalization are defined by the concrete implementation (e.g., REACLIB typically provides NA&lt;sigma v&gt; with units depending on the reaction order). Implementations may use density/electron properties for weak processes or screening, and the composition vector for multi-body reactions.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK (10^9 K). </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density (g cm^-3). May be unused for some reaction types. </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction. May be unused depending on the reaction type. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential. May be unused depending on the reaction type. </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector (molar abundances or number fractions) indexed consistently with index_to_species_map. </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Mapping from state-vector index to Species, used to interpret Y. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The reaction rate for the forward direction, with units/normalization defined by the specific model (implementation must document its convention). </dd></dl>
+
+</div>
+</div>
+<a id="a588a8c19970463d97f5aa333fcd312dc" name="a588a8c19970463d97f5aa333fcd312dc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a588a8c19970463d97f5aa333fcd312dc">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt; gridfire::reaction::Reaction::clone </td>
           <td>(</td>
           <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
           <td> const</td>
@@ -915,18 +599,18 @@ template&lt;typename T&gt; </div>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Gets a set of all unique product species. </p>
-<dl class="section return"><dt>Returns</dt><dd>An unordered_set of product species. </dd></dl>
+<p>Polymorphic deep copy. </p>
+<dl class="section return"><dt>Returns</dt><dd>A std::unique_ptr owning a new <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> equal to this one. </dd></dl>
 
 </div>
 </div>
-<a id="a6e2ff61b9e8409f2a561663628b8ce02" name="a6e2ff61b9e8409f2a561663628b8ce02"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6e2ff61b9e8409f2a561663628b8ce02">&#9670;&#160;</a></span>products()</h2>
+<a id="adaeb5d72faf7d55d4e26f6e1fcba21c1" name="adaeb5d72faf7d55d4e26f6e1fcba21c1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adaeb5d72faf7d55d4e26f6e1fcba21c1">&#9670;&#160;</a></span>contains()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -935,203 +619,7 @@ template&lt;typename T&gt; </div>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::reaction::Reaction::products </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets the vector of product species. </p>
-<dl class="section return"><dt>Returns</dt><dd>A const reference to the vector of products. </dd></dl>
-
-</div>
-</div>
-<a id="abda0b4e4313e6d4ba57acf37d5976fb8" name="abda0b4e4313e6d4ba57acf37d5976fb8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abda0b4e4313e6d4ba57acf37d5976fb8">&#9670;&#160;</a></span>qValue()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double gridfire::reaction::Reaction::qValue </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets the Q-value of the reaction. </p>
-<dl class="section return"><dt>Returns</dt><dd>The Q-value in whatever units the reaction was defined in (usually MeV). </dd></dl>
-
-</div>
-</div>
-<a id="a85968076e686e67763f4fdf4f72a892e" name="a85968076e686e67763f4fdf4f72a892e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a85968076e686e67763f4fdf4f72a892e">&#9670;&#160;</a></span>rateCoefficients()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">const RateCoefficientSet &amp; gridfire::reaction::Reaction::rateCoefficients </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets the set of rate coefficients. </p>
-<dl class="section return"><dt>Returns</dt><dd>A const reference to the <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html" title="Holds the seven coefficients for the REACLIB rate equation.">RateCoefficientSet</a>. </dd></dl>
-
-</div>
-</div>
-<a id="a855ea65e4b62fb0cddc550424a4bc923" name="a855ea65e4b62fb0cddc550424a4bc923"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a855ea65e4b62fb0cddc550424a4bc923">&#9670;&#160;</a></span>reactant_species()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::unordered_set&lt; Species &gt; gridfire::reaction::Reaction::reactant_species </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets a set of all unique reactant species. </p>
-<dl class="section return"><dt>Returns</dt><dd>An unordered_set of reactant species. </dd></dl>
-
-</div>
-</div>
-<a id="a0b543e9b0bb4a21efe4b29780d9bdf5b" name="a0b543e9b0bb4a21efe4b29780d9bdf5b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0b543e9b0bb4a21efe4b29780d9bdf5b">&#9670;&#160;</a></span>reactants()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::reaction::Reaction::reactants </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets the vector of reactant species. </p>
-<dl class="section return"><dt>Returns</dt><dd>A const reference to the vector of reactants. </dd></dl>
-
-</div>
-</div>
-<a id="a410e2ab0784ad751f82bbe55be603db0" name="a410e2ab0784ad751f82bbe55be603db0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a410e2ab0784ad751f82bbe55be603db0">&#9670;&#160;</a></span>sourceLabel()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::string_view gridfire::reaction::Reaction::sourceLabel </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets the source label for the rate data. </p>
-<dl class="section return"><dt>Returns</dt><dd>The source label (e.g., "wc12w", "st08"). </dd></dl>
-
-</div>
-</div>
-<a id="ad359c06d7196c1a7a955a7b66a51dbe3" name="ad359c06d7196c1a7a955a7b66a51dbe3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad359c06d7196c1a7a955a7b66a51dbe3">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[1/2]</span></h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::unordered_map&lt; Species, int &gt; gridfire::reaction::Reaction::stoichiometry </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets a map of all species to their stoichiometric coefficients. </p>
-<dl class="section return"><dt>Returns</dt><dd>An unordered_map from species to their integer coefficients. </dd></dl>
-
-</div>
-</div>
-<a id="aaf0c94db6536b4a9ac1ec08a5c8f01ac" name="aaf0c94db6536b4a9ac1ec08a5c8f01ac"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aaf0c94db6536b4a9ac1ec08a5c8f01ac">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[2/2]</span></h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">int gridfire::reaction::Reaction::stoichiometry </td>
+          <td class="memname">virtual bool gridfire::reaction::Reaction::contains </td>
           <td>(</td>
           <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
           <td> const</td>
@@ -1139,19 +627,435 @@ template&lt;typename T&gt; </div>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Calculates the stoichiometric coefficient for a given species. </p>
+<p>True if the species appears as a reactant or a product. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">species</td><td>The species for which to find the coefficient. </td></tr>
+    <tr><td class="paramname">species</td><td>Species to test. </td></tr>
   </table>
   </dd>
 </dl>
-<dl class="section return"><dt>Returns</dt><dd>The stoichiometric coefficient (negative for reactants, positive for products). </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>Whether the species participates in the reaction (either side). </dd></dl>
+
+</div>
+</div>
+<a id="a5a17ca61d069749960e5a83e58c0b8a1" name="a5a17ca61d069749960e5a83e58c0b8a1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5a17ca61d069749960e5a83e58c0b8a1">&#9670;&#160;</a></span>contains_product()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool gridfire::reaction::Reaction::contains_product </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>True if the species appears among the products. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>Species to test. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Whether the species is a product. </dd></dl>
+
+</div>
+</div>
+<a id="afca3afba45a3db79980c8fe18c87c750" name="afca3afba45a3db79980c8fe18c87c750"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afca3afba45a3db79980c8fe18c87c750">&#9670;&#160;</a></span>contains_reactant()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool gridfire::reaction::Reaction::contains_reactant </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>True if the species appears among the reactants. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>Species to test. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Whether the species is a reactant. </dd></dl>
+
+</div>
+</div>
+<a id="a41b1c16f499c9255251ed43725cf698c" name="a41b1c16f499c9255251ed43725cf698c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a41b1c16f499c9255251ed43725cf698c">&#9670;&#160;</a></span>hash()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual uint64_t gridfire::reaction::Reaction::hash </td>
+          <td>(</td>
+          <td class="paramtype">uint64_t</td>          <td class="paramname"><span class="paramname"><em>seed</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Stable content-based hash for this reaction. </p>
+<p>Intended for use in caches, sets, and order-independent hashing of <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> collections. Implementations should produce the same value across processes for the same content and seed. </p><dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">seed</td><td>Seed value to initialize/mix into the hash. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>64-bit hash value. </dd></dl>
+
+</div>
+</div>
+<a id="a768329002a4f0b8604b1aa51d56b5d1b" name="a768329002a4f0b8604b1aa51d56b5d1b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a768329002a4f0b8604b1aa51d56b5d1b">&#9670;&#160;</a></span>id()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::string_view gridfire::reaction::Reaction::id </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>A stable, unique identifier for this reaction instance. </p>
+<dl class="section return"><dt>Returns</dt><dd>String view of the reaction ID (stable across runs and suitable for lookups). </dd></dl>
+
+</div>
+</div>
+<a id="a640b0bdbed9ed7c2a2e9880ddbcafc1d" name="a640b0bdbed9ed7c2a2e9880ddbcafc1d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a640b0bdbed9ed7c2a2e9880ddbcafc1d">&#9670;&#160;</a></span>is_reverse()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool gridfire::reaction::Reaction::is_reverse </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Whether this object represents a reverse (backward) rate. </p>
+<p>Implementations may pair forward/reverse rates for detailed balance. This flag indicates that the parameterization corresponds to the reverse direction. </p><dl class="section return"><dt>Returns</dt><dd>True for a reverse rate, false for a forward rate. </dd></dl>
+
+</div>
+</div>
+<a id="a348aae35a6c82194ef5387278419e0e6" name="a348aae35a6c82194ef5387278419e0e6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a348aae35a6c82194ef5387278419e0e6">&#9670;&#160;</a></span>num_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual size_t gridfire::reaction::Reaction::num_species </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of unique species involved in the reaction. </p>
+<dl class="section return"><dt>Returns</dt><dd>Count of distinct species across reactants and products. </dd></dl>
+
+</div>
+</div>
+<a id="ac2306d841bad605b7c9ae104397cec0f" name="ac2306d841bad605b7c9ae104397cec0f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac2306d841bad605b7c9ae104397cec0f">&#9670;&#160;</a></span>product_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::unordered_set&lt; fourdst::atomic::Species &gt; gridfire::reaction::Reaction::product_species </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set of unique product species. </p>
+<dl class="section return"><dt>Returns</dt><dd>Unordered set of product species (no duplicates). </dd></dl>
+
+</div>
+</div>
+<a id="ac2918935929030e8d218dc8d107a78f9" name="ac2918935929030e8d218dc8d107a78f9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac2918935929030e8d218dc8d107a78f9">&#9670;&#160;</a></span>products()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::reaction::Reaction::products </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Ordered list of product species. </p>
+<p>Multiplicity is represented by duplicates if applicable. </p><dl class="section return"><dt>Returns</dt><dd>Const reference to the vector of products. </dd></dl>
+
+</div>
+</div>
+<a id="a11c714febaf818f1d4d6c19a064d707e" name="a11c714febaf818f1d4d6c19a064d707e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a11c714febaf818f1d4d6c19a064d707e">&#9670;&#160;</a></span>qValue()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual double gridfire::reaction::Reaction::qValue </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Q-value of the reaction (typically MeV), positive if exothermic. </p>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> Q-value used for energy accounting. </dd></dl>
+
+</div>
+</div>
+<a id="a4be8440aa7e79eab1d44b5d83bcdab79" name="a4be8440aa7e79eab1d44b5d83bcdab79"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4be8440aa7e79eab1d44b5d83bcdab79">&#9670;&#160;</a></span>reactant_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::unordered_set&lt; fourdst::atomic::Species &gt; gridfire::reaction::Reaction::reactant_species </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set of unique reactant species. </p>
+<dl class="section return"><dt>Returns</dt><dd>Unordered set of reactant species (no duplicates). </dd></dl>
+
+</div>
+</div>
+<a id="a0c533797f18c2fe4945f1afb3fb06d5d" name="a0c533797f18c2fe4945f1afb3fb06d5d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0c533797f18c2fe4945f1afb3fb06d5d">&#9670;&#160;</a></span>reactants()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::reaction::Reaction::reactants </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Ordered list of reactant species. </p>
+<p>Multiplicity is represented by duplicates, e.g., (p, p) would list H1 twice. </p><dl class="section return"><dt>Returns</dt><dd>Const reference to the vector of reactants. </dd></dl>
+
+</div>
+</div>
+<a id="a55b7f61d9bde45f2ca485c1b07a05950" name="a55b7f61d9bde45f2ca485c1b07a05950"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a55b7f61d9bde45f2ca485c1b07a05950">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::unordered_map&lt; fourdst::atomic::Species, int &gt; gridfire::reaction::Reaction::stoichiometry </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Full stoichiometry map for this reaction. </p>
+<p>Coefficients are negative for reactants and positive for products; multiplicity is reflected in the magnitude (e.g., 2H -&gt; He gives H: -2, He: +1). </p><dl class="section return"><dt>Returns</dt><dd>Map from Species to integer stoichiometric coefficient. </dd></dl>
+
+</div>
+</div>
+<a id="af0a893603aa88f7d7d205b9b969af487" name="af0a893603aa88f7d7d205b9b969af487"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af0a893603aa88f7d7d205b9b969af487">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual int gridfire::reaction::Reaction::stoichiometry </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Stoichiometric coefficient for a particular species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>Species for which to query the coefficient. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Negative for reactants, positive for products, zero if absent. </dd></dl>
+
+</div>
+</div>
+<a id="a186856dc2ce85d8cc4db43c7164b6afa" name="a186856dc2ce85d8cc4db43c7164b6afa"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a186856dc2ce85d8cc4db43c7164b6afa">&#9670;&#160;</a></span>type()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a> gridfire::reaction::Reaction::type </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Category of this reaction (e.g., REACLIB, WEAK, LOGICAL_REACLIB). </p>
+<dl class="section return"><dt>Returns</dt><dd>Enumerated reaction type for runtime dispatch and filtering. </dd></dl>
 
 </div>
 </div>
@@ -1185,248 +1089,8 @@ template&lt;typename T&gt; </div>
 
 </div>
 </div>
-<h2 class="groupheader">Member Data Documentation</h2>
-<a id="a16f9cbb6269817099d3dc07d4e63da7b" name="a16f9cbb6269817099d3dc07d4e63da7b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a16f9cbb6269817099d3dc07d4e63da7b">&#9670;&#160;</a></span>m_chapter</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">int gridfire::reaction::Reaction::m_chapter</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Chapter number from the REACLIB database, defining the reaction structure. </p>
-
-</div>
-</div>
-<a id="a5c685e5a736b51799e5b9f6746c4126b" name="a5c685e5a736b51799e5b9f6746c4126b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5c685e5a736b51799e5b9f6746c4126b">&#9670;&#160;</a></span>m_id</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::string gridfire::reaction::Reaction::m_id</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Unique identifier for the reaction (e.g., "h1+h1=&gt;h2+e+nu"). </p>
-
-</div>
-</div>
-<a id="a7044d0a1d59d85502ce554e4ec2167e4" name="a7044d0a1d59d85502ce554e4ec2167e4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7044d0a1d59d85502ce554e4ec2167e4">&#9670;&#160;</a></span>m_logger</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">quill::Logger* gridfire::reaction::Reaction::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-</div>
-</div>
-<a id="a6124aa9fc2306349e1dd879a37923248" name="a6124aa9fc2306349e1dd879a37923248"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6124aa9fc2306349e1dd879a37923248">&#9670;&#160;</a></span>m_peName</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::string gridfire::reaction::Reaction::m_peName</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Name of the reaction in (projectile, ejectile) notation (e.g. "p(p,g)d"). </p>
-
-</div>
-</div>
-<a id="a4b5607ed413acdf29539b8a57461e49e" name="a4b5607ed413acdf29539b8a57461e49e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4b5607ed413acdf29539b8a57461e49e">&#9670;&#160;</a></span>m_products</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::vector&lt;fourdst::atomic::Species&gt; gridfire::reaction::Reaction::m_products</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Products of the reaction. </p>
-
-</div>
-</div>
-<a id="a59122a2898bb9af640cc3e9aeb49028b" name="a59122a2898bb9af640cc3e9aeb49028b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a59122a2898bb9af640cc3e9aeb49028b">&#9670;&#160;</a></span>m_qValue</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double gridfire::reaction::Reaction::m_qValue = 0.0</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Q-value of the reaction in MeV. </p>
-
-</div>
-</div>
-<a id="aa61a9a024d7c4ff66a351ccd0277ec72" name="aa61a9a024d7c4ff66a351ccd0277ec72"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa61a9a024d7c4ff66a351ccd0277ec72">&#9670;&#160;</a></span>m_rateCoefficients</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">RateCoefficientSet gridfire::reaction::Reaction::m_rateCoefficients</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>The seven rate coefficients. </p>
-
-</div>
-</div>
-<a id="a87a065b3c7806bcdb5eadb7de2978a11" name="a87a065b3c7806bcdb5eadb7de2978a11"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a87a065b3c7806bcdb5eadb7de2978a11">&#9670;&#160;</a></span>m_reactants</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::vector&lt;fourdst::atomic::Species&gt; gridfire::reaction::Reaction::m_reactants</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Reactants of the reaction. </p>
-
-</div>
-</div>
-<a id="a0b0b9ac498080aae91ffd466d1ae85a9" name="a0b0b9ac498080aae91ffd466d1ae85a9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0b0b9ac498080aae91ffd466d1ae85a9">&#9670;&#160;</a></span>m_reverse</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">bool gridfire::reaction::Reaction::m_reverse = false</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Flag indicating if this is a reverse reaction rate. </p>
-
-</div>
-</div>
-<a id="a0185c6be5465d113f25e00aee1297cd6" name="a0185c6be5465d113f25e00aee1297cd6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0185c6be5465d113f25e00aee1297cd6">&#9670;&#160;</a></span>m_sourceLabel</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::string gridfire::reaction::Reaction::m_sourceLabel</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Source label for the rate data (e.g., "wc12w", "st08"). </p>
-
-</div>
-</div>
-<hr/>The documentation for this class was generated from the following files:<ul>
+<hr/>The documentation for this class was generated from the following file:<ul>
 <li>src/include/gridfire/reaction/<a class="el" href="reaction_8h.html">reaction.h</a></li>
-<li>src/lib/reaction/<a class="el" href="reaction_8cpp.html">reaction.cpp</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/classgridfire_1_1_reaction.js b/docs/html/classgridfire_1_1_reaction.js
index 6795b56a..cf46ddd4 100644
--- a/docs/html/classgridfire_1_1_reaction.js
+++ b/docs/html/classgridfire_1_1_reaction.js
@@ -1,42 +1,27 @@
 var classgridfire_1_1_reaction =
 [
     [ "~Reaction", "classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a", null ],
-    [ "Reaction", "classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c", null ],
-    [ "all_species", "classgridfire_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224", null ],
-    [ "calculate_forward_rate_log_derivative", "classgridfire_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061", null ],
-    [ "calculate_rate", "classgridfire_1_1_reaction.html#a735192a42f72cd68f289493753e1a616", null ],
-    [ "calculate_rate", "classgridfire_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec", null ],
-    [ "calculate_rate", "classgridfire_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af", null ],
-    [ "chapter", "classgridfire_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629", null ],
-    [ "contains", "classgridfire_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b", null ],
-    [ "contains_product", "classgridfire_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2", null ],
-    [ "contains_reactant", "classgridfire_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45", null ],
-    [ "excess_energy", "classgridfire_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5", null ],
-    [ "hash", "classgridfire_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5", null ],
-    [ "id", "classgridfire_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905", null ],
-    [ "is_reverse", "classgridfire_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba", null ],
-    [ "num_species", "classgridfire_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97", null ],
-    [ "operator!=", "classgridfire_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51", null ],
-    [ "operator==", "classgridfire_1_1_reaction.html#ac426457cf0a54a15b206549422083bac", null ],
-    [ "peName", "classgridfire_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97", null ],
-    [ "product_species", "classgridfire_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c", null ],
-    [ "products", "classgridfire_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02", null ],
-    [ "qValue", "classgridfire_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8", null ],
-    [ "rateCoefficients", "classgridfire_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e", null ],
-    [ "reactant_species", "classgridfire_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923", null ],
-    [ "reactants", "classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b", null ],
-    [ "sourceLabel", "classgridfire_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0", null ],
-    [ "stoichiometry", "classgridfire_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3", null ],
-    [ "stoichiometry", "classgridfire_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac", null ],
-    [ "operator<<", "classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8", null ],
-    [ "m_chapter", "classgridfire_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b", null ],
-    [ "m_id", "classgridfire_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b", null ],
-    [ "m_logger", "classgridfire_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4", null ],
-    [ "m_peName", "classgridfire_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248", null ],
-    [ "m_products", "classgridfire_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e", null ],
-    [ "m_qValue", "classgridfire_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b", null ],
-    [ "m_rateCoefficients", "classgridfire_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72", null ],
-    [ "m_reactants", "classgridfire_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11", null ],
-    [ "m_reverse", "classgridfire_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9", null ],
-    [ "m_sourceLabel", "classgridfire_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6", null ]
+    [ "all_species", "classgridfire_1_1_reaction.html#ace0b2bee91702e0ab97b6fc74999d6f0", null ],
+    [ "calculate_energy_generation_rate", "classgridfire_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80", null ],
+    [ "calculate_energy_generation_rate", "classgridfire_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd", null ],
+    [ "calculate_log_rate_partial_deriv_wrt_T9", "classgridfire_1_1_reaction.html#aec9859c030364e1d4a740197514731db", null ],
+    [ "calculate_rate", "classgridfire_1_1_reaction.html#a8cbc768819bea8497a7b9fa644b8fd65", null ],
+    [ "calculate_rate", "classgridfire_1_1_reaction.html#abb3e2b9c5404f45fc5656eeac1d06a6c", null ],
+    [ "clone", "classgridfire_1_1_reaction.html#a588a8c19970463d97f5aa333fcd312dc", null ],
+    [ "contains", "classgridfire_1_1_reaction.html#adaeb5d72faf7d55d4e26f6e1fcba21c1", null ],
+    [ "contains_product", "classgridfire_1_1_reaction.html#a5a17ca61d069749960e5a83e58c0b8a1", null ],
+    [ "contains_reactant", "classgridfire_1_1_reaction.html#afca3afba45a3db79980c8fe18c87c750", null ],
+    [ "hash", "classgridfire_1_1_reaction.html#a41b1c16f499c9255251ed43725cf698c", null ],
+    [ "id", "classgridfire_1_1_reaction.html#a768329002a4f0b8604b1aa51d56b5d1b", null ],
+    [ "is_reverse", "classgridfire_1_1_reaction.html#a640b0bdbed9ed7c2a2e9880ddbcafc1d", null ],
+    [ "num_species", "classgridfire_1_1_reaction.html#a348aae35a6c82194ef5387278419e0e6", null ],
+    [ "product_species", "classgridfire_1_1_reaction.html#ac2306d841bad605b7c9ae104397cec0f", null ],
+    [ "products", "classgridfire_1_1_reaction.html#ac2918935929030e8d218dc8d107a78f9", null ],
+    [ "qValue", "classgridfire_1_1_reaction.html#a11c714febaf818f1d4d6c19a064d707e", null ],
+    [ "reactant_species", "classgridfire_1_1_reaction.html#a4be8440aa7e79eab1d44b5d83bcdab79", null ],
+    [ "reactants", "classgridfire_1_1_reaction.html#a0c533797f18c2fe4945f1afb3fb06d5d", null ],
+    [ "stoichiometry", "classgridfire_1_1_reaction.html#a55b7f61d9bde45f2ca485c1b07a05950", null ],
+    [ "stoichiometry", "classgridfire_1_1_reaction.html#af0a893603aa88f7d7d205b9b969af487", null ],
+    [ "type", "classgridfire_1_1_reaction.html#a186856dc2ce85d8cc4db43c7164b6afa", null ],
+    [ "operator<<", "classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1_reaction.png b/docs/html/classgridfire_1_1_reaction.png
index ae9d41d23c51f1f930961172e1dc5203ba84d011..f65035f84bc7431104751e886f970d5808c30209 100644
GIT binary patch
literal 1626
zcmb7_dr;C@6vux`nSnj9*0M|+l3ZN{dzty72bM@_p%rRr)*9=UVfn(u$7U$jC`zvE
zE-JH=jb)0CsfhRrG<s;RX=a)aG&NBZG!hZ{?XTV0nH~FMXYU{9o_oG??>*<<&)l1K
z-0R3H_$D|20ILWdcoG2UDIlL|2!kv(lF$Nmn~xv$bq7HZaz9L}qFCZWM|<n=jhvPb
zgM))md{67C0!UjKN%Hampz&XAuRgaE0G5vs@CSTpdQ*A5*Jf&sm-iA+cGiOHz#ZzX
zZ}nR?z~U&U4qhmptuAS|YusR(66|5HKQM*K^d-~qc$BRR3WYQ=M`jr!SWJ(bj3fBm
zmfdoiY05kXRn%s$bH{&DKcMw;e~=-O)3PkVrRKVx82)qdHq^^=Juimm$}3AnG)!Gz
z7{i;P3eoyMd~yPX@)AS3*PxAj`}Lllhm)goGk*L!VpPPH8v+HBxsKfV*~noxg?6&~
zRv3fF9kz2p4J})3$TJhPQk2Bcg7Bmm<@lC*XUXa2ei<-5x{9K<nGE*CC8Pv6HWG5@
zEmM!_4}4VY2;18m^Kv|*Plfhd;7{3^4X*d1v&XKdF=+^>qO1B=)FviVa1P3xVm~s<
zWP%}IS8MqtRpYF)YI~zY7{I9Uh!EJAWJY$}Z;sipd4)$Z1NL4f6{N$ye=OD`1@{4I
zW#LJ9NJiP3ZAF@_&NM`<fKCktEu&`~Ec;7lT@#+c#Oiq*mb+g3JMteBmdZ^VlCk%)
zOT(=plj*ER5gy!U5J@(+XV}md>}*2>rvOi`wnPv8q6n@tlF+RP@%awbZ`4i)s7V2j
z?R5kai+3w|wjQHxR-;ey77)&B+gxV%Wi`}DSQ%Oe8OtCMJ(~DVhIM@lgEVhdQQq45
z3$hN8O9Hm^v&xlAq{d8CL_E_(O;vJ)ovm}Ovb@8@?qhvU1O9vXzU&&a^}05tMPT<`
zT2AH|cNZ%0Tdh-P!DWr@V~2*ZpatVlGVWoEXT;e@6Ynlngudk#1r}LOId0d+C~<z|
z1$~@6x_0EJr@WQZZn2@qiCl7(crKOnnwn6ga(FP1Ue!)#hsi&-EX2vMQgBEd$Q;Xk
zn)n^v-#w2vnky(S3oR=Vg%s2)yzWjly|^4?Tz?yEX4ILtVYlIeQ)7Df28iHPwvZpu
z+SPlaCSBgt#h<+7T>EHd7!hZezYc|qPANTPek@cpJN0Z^u}Qb#^cJ5L-sL_wL6q(g
zBJPE$u1zcz_AIN4mq?q+e+{vnpKlnM3eD_$NuKC}iQqr_QybdZZ@X$@O<$b&qb~`I
z0LRoU+v3;V(+-7I(QC9eGg2|{Q+5I9y&4X3l{lOPJx*2jm|_Tt%v9?|s>Ut<6?k6D
z@~N?0bj>J?Bxo*txlXYdZH+X+5Fo?|o=q$T$@7^zx;C41P467w_I!CG@V-&3Hxn-G
zcHF-SqHhhZKFn+@0%8z8VX&0JrARG7^#9BBe3Iupob$y1vDWNt_&*T-JL^^o87r|L
zAiP2*{5CM&ZrA@!#-bEQkYC-L7&tVW!|psUV|U8xod`A3MU2#dOR0OKITcuU$J^hN
zberML9jUrk3U*9IEwtPdh*Y6`H1wj>sCb%^_|YKZtlyPgN9}5N>B=QzT#?;0ze&tF
zdcDIQ*Wn&L8<*wFso=;jX3E=!C_bWzfzta=ochcC(io@3mwJej`uID#IAiXX{<+@B
ze6La1umx3ERi;Q57p4YO@+{`qnnX0+^rG|dtTM<yjbSk$YYm*-s7+TScqY2(lsP8-
z&JuxDvB87jxf?D{`z+w#2h%IE5`_|3wURE9Na?~@noouWRsgHqL|M@6j*ZDHv))Lw
zNncbJw(Zm{=H&fMR-@>g3iNm@oqiB8kSAk*Lb|#A&Y=2eQY}EKRfQtVlT)zlD-iI}
fvU}O=+aR#RV`p2J-hn63F8~nSz3}{l=WhH7999rj

delta 675
zcmcb`bA?s0Gr-TCmrII^fq{Y7)59eQNS_4a01jp#*;2T0&qPJLdZu_!7srqa#<z3t
zZfaKGX_=n7Z1em7N0$F{6nGnvZEfjiwQh<+qyMCe?kPdLS|_NyWaAR@{IpbIqDuU(
zhLkb`6HQ%P&u3EE-72{+Eenp`-t*2UE;mEwhV<SH=5)_z+wJe1PV9MKyU}m2>B*ce
zXA4$4H;a2##jATBll5WwoLC>y^{jrU*Y2w`&b^GV_D{NM);r6_@Yt@$)1H*<sO>+Z
z_Vbp7>HpRg?Z>$@KRYKKPMxbBTOxaYa{S~gw^Hp@cpXpjO#ZknW9p}Et77-7?R;mg
z;2Hknu+2mjbu0PUa}IW$dY(l~K#m2wTHVu2^R6Sqhf-UH2V%Q;Pd+ZJ7oT!_f{kNd
zQ<40n6|oEtd>xq>_KB!4Jn$xgQ4nMK{7<fJ(Yc?uozzZBYj}8En%>l+Qkywh<*M4!
zrS6m5ztq&EA6vH5nD2ADyk}nK`TwhpZ{8R7e3w~Yf66fZ^r~wA_cygq{`uBkZQ1kj
zs?N2Q;j&@fxox*i>gR<&*ZF_y@#%Ha=F^_Y0z;xE<CDGhYLT=5H|^TGrT3-ErMT4Y
z)fe;rePa-Qo%(%;(#EXWZht@fs^q<0=f6Mi@!2Pq{`Wrp=kuK0e$B{KezJ)9Yf=86
z^`Cui9eKU|8)xOovJ%;E_n)7%>Y91NP4?$%i#pFD$9Xvupurm)ea&@g$fnTTjjOLG
z+*})b^cw%35BF>R{c3DIKJ8f-v*EPxq(7bO;x4#d@9%%|h;{Z0rIYom6%;*z0Y2%=
hQgzRBmiHa&TVqz8jK3E52$=2|JYD@<);T3K0RXGGIi&yq

diff --git a/docs/html/classgridfire_1_1_reaction_set-members.html b/docs/html/classgridfire_1_1_reaction_set-members.html
new file mode 100644
index 00000000..313940f2
--- /dev/null
+++ b/docs/html/classgridfire_1_1_reaction_set-members.html
@@ -0,0 +1,147 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1_reaction_set.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::ReactionSet Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1">add_reaction</a>(const Reaction &amp;reaction)</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#ad7e95562ea0860bf492b447341f41fb5">add_reaction</a>(std::unique_ptr&lt; Reaction &gt; &amp;&amp;reaction)</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613">begin</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#adb73fe9ff0178359409e2bea46a620c2">begin</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300">clear</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387">contains</a>(const std::string_view &amp;id) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#a2f6b165c86634a68f35032c2267255f8">contains</a>(const Reaction &amp;reaction) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e">contains_product</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2">contains_reactant</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a">contains_species</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987">end</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#a436f9c4b8f8a4e115b19728d57d8e105">end</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b">getReactionSetSpecies</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99">hash</a>(uint64_t seed) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111">m_id</a></td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44">m_reactionNameMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8">operator!=</a>(const ReactionSet &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20">operator&lt;&lt;</a>(std::ostream &amp;os, const ReactionSet &amp;rs)</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a">operator=</a>(const ReactionSet &amp;other)</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135">operator==</a>(const ReactionSet &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b">operator[]</a>(size_t index) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#a896b4e492ef596d9174aeda4b59c46cd">operator[]</a>(const std::string_view &amp;id) const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de">ReactionSet</a>(std::vector&lt; std::unique_ptr&lt; Reaction &gt; &gt; &amp;&amp;reactions)</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#a789dee5d93810b85062e59508fe0adea">ReactionSet</a>(const std::vector&lt; Reaction * &gt; &amp;reactions)</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#ab9edff40316b42ce41b2f895962c1041">ReactionSet</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#acfe2341ae1f016ad82098b6f5a1efc45">ReactionSet</a>(const ReactionSet &amp;other)</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd">remove_reaction</a>(const Reaction &amp;reaction)</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf">size</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1_reaction_set.html b/docs/html/classgridfire_1_1_reaction_set.html
new file mode 100644
index 00000000..1b300db2
--- /dev/null
+++ b/docs/html/classgridfire_1_1_reaction_set.html
@@ -0,0 +1,1050 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::ReactionSet Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1_reaction_set.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="classgridfire_1_1_reaction_set-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::ReactionSet Class Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;reaction.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a9a63306b92e23e3651c955ab614084de" id="r_a9a63306b92e23e3651c955ab614084de"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9a63306b92e23e3651c955ab614084de">ReactionSet</a> (std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt; &gt; &amp;&amp;reactions)</td></tr>
+<tr class="memdesc:a9a63306b92e23e3651c955ab614084de"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1_reaction_set.html">ReactionSet</a> from a vector of reactions.  <br /></td></tr>
+<tr class="separator:a9a63306b92e23e3651c955ab614084de"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a789dee5d93810b85062e59508fe0adea" id="r_a789dee5d93810b85062e59508fe0adea"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a789dee5d93810b85062e59508fe0adea">ReactionSet</a> (const std::vector&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> * &gt; &amp;reactions)</td></tr>
+<tr class="separator:a789dee5d93810b85062e59508fe0adea"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab9edff40316b42ce41b2f895962c1041" id="r_ab9edff40316b42ce41b2f895962c1041"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab9edff40316b42ce41b2f895962c1041">ReactionSet</a> ()</td></tr>
+<tr class="separator:ab9edff40316b42ce41b2f895962c1041"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acfe2341ae1f016ad82098b6f5a1efc45" id="r_acfe2341ae1f016ad82098b6f5a1efc45"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#acfe2341ae1f016ad82098b6f5a1efc45">ReactionSet</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;other)</td></tr>
+<tr class="memdesc:acfe2341ae1f016ad82098b6f5a1efc45"><td class="mdescLeft">&#160;</td><td class="mdescRight">Copy constructor.  <br /></td></tr>
+<tr class="separator:acfe2341ae1f016ad82098b6f5a1efc45"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aac890bf7fdf689890d765ff67489520a" id="r_aac890bf7fdf689890d765ff67489520a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aac890bf7fdf689890d765ff67489520a">operator=</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;other)</td></tr>
+<tr class="memdesc:aac890bf7fdf689890d765ff67489520a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Copy assignment operator.  <br /></td></tr>
+<tr class="separator:aac890bf7fdf689890d765ff67489520a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad9dbc77e93467c95ebda908b53e9a9d1" id="r_ad9dbc77e93467c95ebda908b53e9a9d1"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad9dbc77e93467c95ebda908b53e9a9d1">add_reaction</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;reaction)</td></tr>
+<tr class="memdesc:ad9dbc77e93467c95ebda908b53e9a9d1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Adds a reaction to the set.  <br /></td></tr>
+<tr class="separator:ad9dbc77e93467c95ebda908b53e9a9d1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad7e95562ea0860bf492b447341f41fb5" id="r_ad7e95562ea0860bf492b447341f41fb5"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad7e95562ea0860bf492b447341f41fb5">add_reaction</a> (std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt; &amp;&amp;reaction)</td></tr>
+<tr class="separator:ad7e95562ea0860bf492b447341f41fb5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1177193b1e46b4e5be630028883ab8dd" id="r_a1177193b1e46b4e5be630028883ab8dd"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1177193b1e46b4e5be630028883ab8dd">remove_reaction</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;reaction)</td></tr>
+<tr class="memdesc:a1177193b1e46b4e5be630028883ab8dd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Removes a reaction from the set.  <br /></td></tr>
+<tr class="separator:a1177193b1e46b4e5be630028883ab8dd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae5f8078e77a700a8356487fbd69ba387" id="r_ae5f8078e77a700a8356487fbd69ba387"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae5f8078e77a700a8356487fbd69ba387">contains</a> (const std::string_view &amp;id) const</td></tr>
+<tr class="memdesc:ae5f8078e77a700a8356487fbd69ba387"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the set contains a reaction with the given ID.  <br /></td></tr>
+<tr class="separator:ae5f8078e77a700a8356487fbd69ba387"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2f6b165c86634a68f35032c2267255f8" id="r_a2f6b165c86634a68f35032c2267255f8"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2f6b165c86634a68f35032c2267255f8">contains</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;reaction) const</td></tr>
+<tr class="memdesc:a2f6b165c86634a68f35032c2267255f8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the set contains the given reaction.  <br /></td></tr>
+<tr class="separator:a2f6b165c86634a68f35032c2267255f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af14cf34d7367cb6a6be5191724c2d4cf" id="r_af14cf34d7367cb6a6be5191724c2d4cf"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af14cf34d7367cb6a6be5191724c2d4cf">size</a> () const</td></tr>
+<tr class="memdesc:af14cf34d7367cb6a6be5191724c2d4cf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the number of reactions in the set.  <br /></td></tr>
+<tr class="separator:af14cf34d7367cb6a6be5191724c2d4cf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa8e0d65aafc6e0320690b4906e1bf300" id="r_aa8e0d65aafc6e0320690b4906e1bf300"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa8e0d65aafc6e0320690b4906e1bf300">clear</a> ()</td></tr>
+<tr class="memdesc:aa8e0d65aafc6e0320690b4906e1bf300"><td class="mdescLeft">&#160;</td><td class="mdescRight">Removes all reactions from the set.  <br /></td></tr>
+<tr class="separator:aa8e0d65aafc6e0320690b4906e1bf300"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5b872a8519740a6d06cfaed03784826a" id="r_a5b872a8519740a6d06cfaed03784826a"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5b872a8519740a6d06cfaed03784826a">contains_species</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
+<tr class="memdesc:a5b872a8519740a6d06cfaed03784826a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if any reaction in the set involves the given species.  <br /></td></tr>
+<tr class="separator:a5b872a8519740a6d06cfaed03784826a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a256998eddf292f744d51cdc3e178d4c2" id="r_a256998eddf292f744d51cdc3e178d4c2"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a256998eddf292f744d51cdc3e178d4c2">contains_reactant</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
+<tr class="memdesc:a256998eddf292f744d51cdc3e178d4c2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if any reaction in the set contains the given species as a reactant.  <br /></td></tr>
+<tr class="separator:a256998eddf292f744d51cdc3e178d4c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4bdf50219d686a6cbc0b3cc5365dc18e" id="r_a4bdf50219d686a6cbc0b3cc5365dc18e"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4bdf50219d686a6cbc0b3cc5365dc18e">contains_product</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
+<tr class="memdesc:a4bdf50219d686a6cbc0b3cc5365dc18e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if any reaction in the set contains the given species as a product.  <br /></td></tr>
+<tr class="separator:a4bdf50219d686a6cbc0b3cc5365dc18e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4057f74ae647b691f4f61f150553c52b" id="r_a4057f74ae647b691f4f61f150553c52b"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4057f74ae647b691f4f61f150553c52b">operator[]</a> (size_t index) const</td></tr>
+<tr class="memdesc:a4057f74ae647b691f4f61f150553c52b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Accesses a reaction by its index.  <br /></td></tr>
+<tr class="separator:a4057f74ae647b691f4f61f150553c52b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a896b4e492ef596d9174aeda4b59c46cd" id="r_a896b4e492ef596d9174aeda4b59c46cd"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a896b4e492ef596d9174aeda4b59c46cd">operator[]</a> (const std::string_view &amp;id) const</td></tr>
+<tr class="memdesc:a896b4e492ef596d9174aeda4b59c46cd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Accesses a reaction by its ID.  <br /></td></tr>
+<tr class="separator:a896b4e492ef596d9174aeda4b59c46cd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4e572e823a80b905e7d002b612123135" id="r_a4e572e823a80b905e7d002b612123135"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4e572e823a80b905e7d002b612123135">operator==</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;other) const</td></tr>
+<tr class="memdesc:a4e572e823a80b905e7d002b612123135"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compares this set with another for equality.  <br /></td></tr>
+<tr class="separator:a4e572e823a80b905e7d002b612123135"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a529189f464aebc6b5ac5c717f70e14b8" id="r_a529189f464aebc6b5ac5c717f70e14b8"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a529189f464aebc6b5ac5c717f70e14b8">operator!=</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;other) const</td></tr>
+<tr class="memdesc:a529189f464aebc6b5ac5c717f70e14b8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compares this set with another for inequality.  <br /></td></tr>
+<tr class="separator:a529189f464aebc6b5ac5c717f70e14b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad28907fc08de978461d68cc5b77a3a99" id="r_ad28907fc08de978461d68cc5b77a3a99"><td class="memItemLeft" align="right" valign="top">uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad28907fc08de978461d68cc5b77a3a99">hash</a> (uint64_t seed) const</td></tr>
+<tr class="memdesc:ad28907fc08de978461d68cc5b77a3a99"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes a hash for the entire set.  <br /></td></tr>
+<tr class="separator:ad28907fc08de978461d68cc5b77a3a99"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a133ad8cca6a75d31ef8efe67801aef1b" id="r_a133ad8cca6a75d31ef8efe67801aef1b"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a133ad8cca6a75d31ef8efe67801aef1b">getReactionSetSpecies</a> () const</td></tr>
+<tr class="separator:a133ad8cca6a75d31ef8efe67801aef1b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr><td colspan="2"><div class="groupHeader">Iterators</div></td></tr>
+<tr><td colspan="2"><div class="groupText"><p>Provides iterators to loop over the reactions in the set. </p>
+</div></td></tr>
+<tr class="memitem:a228f2a00f46a6ee01be887490a722613" id="r_a228f2a00f46a6ee01be887490a722613"><td class="memItemLeft" align="right" valign="top">auto&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a228f2a00f46a6ee01be887490a722613">begin</a> ()</td></tr>
+<tr class="separator:a228f2a00f46a6ee01be887490a722613"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adb73fe9ff0178359409e2bea46a620c2" id="r_adb73fe9ff0178359409e2bea46a620c2"><td class="memItemLeft" align="right" valign="top">auto&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#adb73fe9ff0178359409e2bea46a620c2">begin</a> () const</td></tr>
+<tr class="separator:adb73fe9ff0178359409e2bea46a620c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abae9fbc4b4306479a6cd3173ac628987" id="r_abae9fbc4b4306479a6cd3173ac628987"><td class="memItemLeft" align="right" valign="top">auto&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abae9fbc4b4306479a6cd3173ac628987">end</a> ()</td></tr>
+<tr class="separator:abae9fbc4b4306479a6cd3173ac628987"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a436f9c4b8f8a4e115b19728d57d8e105" id="r_a436f9c4b8f8a4e115b19728d57d8e105"><td class="memItemLeft" align="right" valign="top">auto&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a436f9c4b8f8a4e115b19728d57d8e105">end</a> () const</td></tr>
+<tr class="separator:a436f9c4b8f8a4e115b19728d57d8e105"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:aff5ae284012009164d4b3033577709eb" id="r_aff5ae284012009164d4b3033577709eb"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aff5ae284012009164d4b3033577709eb">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="separator:aff5ae284012009164d4b3033577709eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abd6feda1b3f65a6177904755581f6efe" id="r_abd6feda1b3f65a6177904755581f6efe"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abd6feda1b3f65a6177904755581f6efe">m_reactions</a></td></tr>
+<tr class="separator:abd6feda1b3f65a6177904755581f6efe"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af92e3003b2a3606b48ab857cdedc3111" id="r_af92e3003b2a3606b48ab857cdedc3111"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af92e3003b2a3606b48ab857cdedc3111">m_id</a></td></tr>
+<tr class="separator:af92e3003b2a3606b48ab857cdedc3111"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a62965c04447909462bb4f2112661ef44" id="r_a62965c04447909462bb4f2112661ef44"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; std::string, size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a62965c04447909462bb4f2112661ef44">m_reactionNameMap</a></td></tr>
+<tr class="memdesc:a62965c04447909462bb4f2112661ef44"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps reaction IDs to <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> objects for quick lookup.  <br /></td></tr>
+<tr class="separator:a62965c04447909462bb4f2112661ef44"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="friends" name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:a5a5e6ed364794f872c2c819536e24c20" id="r_a5a5e6ed364794f872c2c819536e24c20"><td class="memItemLeft" align="right" valign="top">std::ostream &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5a5e6ed364794f872c2c819536e24c20">operator&lt;&lt;</a> (std::ostream &amp;os, const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;rs)</td></tr>
+<tr class="separator:a5a5e6ed364794f872c2c819536e24c20"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a9a63306b92e23e3651c955ab614084de" name="a9a63306b92e23e3651c955ab614084de"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9a63306b92e23e3651c955ab614084de">&#9670;&#160;</a></span>ReactionSet() <span class="overload">[1/4]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::ReactionSet::ReactionSet </td>
+          <td>(</td>
+          <td class="paramtype">std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt; &gt; &amp;&amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel explicit">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs a <a class="el" href="classgridfire_1_1_reaction_set.html">ReactionSet</a> from a vector of reactions. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The initial vector of <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> objects. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a789dee5d93810b85062e59508fe0adea" name="a789dee5d93810b85062e59508fe0adea"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a789dee5d93810b85062e59508fe0adea">&#9670;&#160;</a></span>ReactionSet() <span class="overload">[2/4]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::ReactionSet::ReactionSet </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> * &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel explicit">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab9edff40316b42ce41b2f895962c1041" name="ab9edff40316b42ce41b2f895962c1041"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab9edff40316b42ce41b2f895962c1041">&#9670;&#160;</a></span>ReactionSet() <span class="overload">[3/4]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::ReactionSet::ReactionSet </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel default">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="acfe2341ae1f016ad82098b6f5a1efc45" name="acfe2341ae1f016ad82098b6f5a1efc45"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acfe2341ae1f016ad82098b6f5a1efc45">&#9670;&#160;</a></span>ReactionSet() <span class="overload">[4/4]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::ReactionSet::ReactionSet </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>other</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Copy constructor. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The <a class="el" href="classgridfire_1_1_reaction_set.html">ReactionSet</a> to copy. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ad9dbc77e93467c95ebda908b53e9a9d1" name="ad9dbc77e93467c95ebda908b53e9a9d1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad9dbc77e93467c95ebda908b53e9a9d1">&#9670;&#160;</a></span>add_reaction() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::reaction::ReactionSet::add_reaction </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reaction</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Adds a reaction to the set. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> to add. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="ad7e95562ea0860bf492b447341f41fb5" name="ad7e95562ea0860bf492b447341f41fb5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad7e95562ea0860bf492b447341f41fb5">&#9670;&#160;</a></span>add_reaction() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::reaction::ReactionSet::add_reaction </td>
+          <td>(</td>
+          <td class="paramtype">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt; &amp;&amp;</td>          <td class="paramname"><span class="paramname"><em>reaction</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a228f2a00f46a6ee01be887490a722613" name="a228f2a00f46a6ee01be887490a722613"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a228f2a00f46a6ee01be887490a722613">&#9670;&#160;</a></span>begin() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::reaction::ReactionSet::begin </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="adb73fe9ff0178359409e2bea46a620c2" name="adb73fe9ff0178359409e2bea46a620c2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adb73fe9ff0178359409e2bea46a620c2">&#9670;&#160;</a></span>begin() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::reaction::ReactionSet::begin </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aa8e0d65aafc6e0320690b4906e1bf300" name="aa8e0d65aafc6e0320690b4906e1bf300"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa8e0d65aafc6e0320690b4906e1bf300">&#9670;&#160;</a></span>clear()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::reaction::ReactionSet::clear </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Removes all reactions from the set. </p>
+
+</div>
+</div>
+<a id="a2f6b165c86634a68f35032c2267255f8" name="a2f6b165c86634a68f35032c2267255f8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2f6b165c86634a68f35032c2267255f8">&#9670;&#160;</a></span>contains() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReactionSet::contains </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reaction</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if the set contains the given reaction. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> to find. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the reaction is in the set, false otherwise. </dd></dl>
+
+</div>
+</div>
+<a id="ae5f8078e77a700a8356487fbd69ba387" name="ae5f8078e77a700a8356487fbd69ba387"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae5f8078e77a700a8356487fbd69ba387">&#9670;&#160;</a></span>contains() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReactionSet::contains </td>
+          <td>(</td>
+          <td class="paramtype">const std::string_view &amp;</td>          <td class="paramname"><span class="paramname"><em>id</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if the set contains a reaction with the given ID. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">id</td><td>The ID of the reaction to find. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the reaction is in the set, false otherwise. </dd></dl>
+
+</div>
+</div>
+<a id="a4bdf50219d686a6cbc0b3cc5365dc18e" name="a4bdf50219d686a6cbc0b3cc5365dc18e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4bdf50219d686a6cbc0b3cc5365dc18e">&#9670;&#160;</a></span>contains_product()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReactionSet::contains_product </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if any reaction in the set contains the given species as a product. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the species is a product in any reaction. </dd></dl>
+
+</div>
+</div>
+<a id="a256998eddf292f744d51cdc3e178d4c2" name="a256998eddf292f744d51cdc3e178d4c2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a256998eddf292f744d51cdc3e178d4c2">&#9670;&#160;</a></span>contains_reactant()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReactionSet::contains_reactant </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if any reaction in the set contains the given species as a reactant. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the species is a reactant in any reaction. </dd></dl>
+
+</div>
+</div>
+<a id="a5b872a8519740a6d06cfaed03784826a" name="a5b872a8519740a6d06cfaed03784826a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5b872a8519740a6d06cfaed03784826a">&#9670;&#160;</a></span>contains_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReactionSet::contains_species </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if any reaction in the set involves the given species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the species is involved in any reaction. </dd></dl>
+
+</div>
+</div>
+<a id="abae9fbc4b4306479a6cd3173ac628987" name="abae9fbc4b4306479a6cd3173ac628987"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abae9fbc4b4306479a6cd3173ac628987">&#9670;&#160;</a></span>end() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::reaction::ReactionSet::end </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a436f9c4b8f8a4e115b19728d57d8e105" name="a436f9c4b8f8a4e115b19728d57d8e105"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a436f9c4b8f8a4e115b19728d57d8e105">&#9670;&#160;</a></span>end() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::reaction::ReactionSet::end </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a133ad8cca6a75d31ef8efe67801aef1b" name="a133ad8cca6a75d31ef8efe67801aef1b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a133ad8cca6a75d31ef8efe67801aef1b">&#9670;&#160;</a></span>getReactionSetSpecies()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_set&lt; Species &gt; gridfire::reaction::ReactionSet::getReactionSetSpecies </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ad28907fc08de978461d68cc5b77a3a99" name="ad28907fc08de978461d68cc5b77a3a99"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad28907fc08de978461d68cc5b77a3a99">&#9670;&#160;</a></span>hash()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">uint64_t gridfire::reaction::ReactionSet::hash </td>
+          <td>(</td>
+          <td class="paramtype">uint64_t</td>          <td class="paramname"><span class="paramname"><em>seed</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Computes a hash for the entire set. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">seed</td><td>The seed for the hash function. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A 64-bit hash value.</dd></dl>
+<p>The algorithm computes the hash of each individual reaction, sorts the hashes, and then computes a final hash over the sorted list of hashes. This ensures the hash is order-independent. </p>
+
+</div>
+</div>
+<a id="a529189f464aebc6b5ac5c717f70e14b8" name="a529189f464aebc6b5ac5c717f70e14b8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a529189f464aebc6b5ac5c717f70e14b8">&#9670;&#160;</a></span>operator!=()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReactionSet::operator!= </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>other</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Compares this set with another for inequality. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1_reaction_set.html">ReactionSet</a> to compare with. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the sets are not equal. </dd></dl>
+
+</div>
+</div>
+<a id="aac890bf7fdf689890d765ff67489520a" name="aac890bf7fdf689890d765ff67489520a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aac890bf7fdf689890d765ff67489520a">&#9670;&#160;</a></span>operator=()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp; gridfire::reaction::ReactionSet::operator= </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>other</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Copy assignment operator. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The <a class="el" href="classgridfire_1_1_reaction_set.html">ReactionSet</a> to assign from. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A reference to this <a class="el" href="classgridfire_1_1_reaction_set.html">ReactionSet</a>. </dd></dl>
+
+</div>
+</div>
+<a id="a4e572e823a80b905e7d002b612123135" name="a4e572e823a80b905e7d002b612123135"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4e572e823a80b905e7d002b612123135">&#9670;&#160;</a></span>operator==()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReactionSet::operator== </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>other</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Compares this set with another for equality. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1_reaction_set.html">ReactionSet</a> to compare with. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the sets are equal (same size and hash). </dd></dl>
+
+</div>
+</div>
+<a id="a896b4e492ef596d9174aeda4b59c46cd" name="a896b4e492ef596d9174aeda4b59c46cd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a896b4e492ef596d9174aeda4b59c46cd">&#9670;&#160;</a></span>operator[]() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp; gridfire::reaction::ReactionSet::operator[] </td>
+          <td>(</td>
+          <td class="paramtype">const std::string_view &amp;</td>          <td class="paramname"><span class="paramname"><em>id</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Accesses a reaction by its ID. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">id</td><td>The ID of the reaction to access. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a>. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::out_of_range</td><td>if no reaction with the given ID exists. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a4057f74ae647b691f4f61f150553c52b" name="a4057f74ae647b691f4f61f150553c52b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4057f74ae647b691f4f61f150553c52b">&#9670;&#160;</a></span>operator[]() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp; gridfire::reaction::ReactionSet::operator[] </td>
+          <td>(</td>
+          <td class="paramtype">size_t</td>          <td class="paramname"><span class="paramname"><em>index</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Accesses a reaction by its index. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">index</td><td>The index of the reaction to access. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a>. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::out_of_range</td><td>if the index is out of bounds. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a1177193b1e46b4e5be630028883ab8dd" name="a1177193b1e46b4e5be630028883ab8dd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1177193b1e46b4e5be630028883ab8dd">&#9670;&#160;</a></span>remove_reaction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::reaction::ReactionSet::remove_reaction </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reaction</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Removes a reaction from the set. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> to remove. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="af14cf34d7367cb6a6be5191724c2d4cf" name="af14cf34d7367cb6a6be5191724c2d4cf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af14cf34d7367cb6a6be5191724c2d4cf">&#9670;&#160;</a></span>size()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::reaction::ReactionSet::size </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the number of reactions in the set. </p>
+<dl class="section return"><dt>Returns</dt><dd>The size of the set. </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Friends And Related Symbol Documentation</h2>
+<a id="a5a5e6ed364794f872c2c819536e24c20" name="a5a5e6ed364794f872c2c819536e24c20"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5a5e6ed364794f872c2c819536e24c20">&#9670;&#160;</a></span>operator&lt;&lt;</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::ostream &amp; operator&lt;&lt; </td>
+          <td>(</td>
+          <td class="paramtype">std::ostream &amp;</td>          <td class="paramname"><span class="paramname"><em>os</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>rs</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel friend">friend</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="af92e3003b2a3606b48ab857cdedc3111" name="af92e3003b2a3606b48ab857cdedc3111"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af92e3003b2a3606b48ab857cdedc3111">&#9670;&#160;</a></span>m_id</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::reaction::ReactionSet::m_id</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aff5ae284012009164d4b3033577709eb" name="aff5ae284012009164d4b3033577709eb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aff5ae284012009164d4b3033577709eb">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::reaction::ReactionSet::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a62965c04447909462bb4f2112661ef44" name="a62965c04447909462bb4f2112661ef44"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a62965c04447909462bb4f2112661ef44">&#9670;&#160;</a></span>m_reactionNameMap</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;std::string, size_t&gt; gridfire::reaction::ReactionSet::m_reactionNameMap</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Maps reaction IDs to <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> objects for quick lookup. </p>
+
+</div>
+</div>
+<a id="abd6feda1b3f65a6177904755581f6efe" name="abd6feda1b3f65a6177904755581f6efe"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abd6feda1b3f65a6177904755581f6efe">&#9670;&#160;</a></span>m_reactions</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;std::unique_ptr&lt;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a>&gt; &gt; gridfire::reaction::ReactionSet::m_reactions</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/reaction/<a class="el" href="reaction_8h.html">reaction.h</a></li>
+<li>src/lib/reaction/<a class="el" href="reaction_8cpp.html">reaction.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="classgridfire_1_1_reaction_set.html">ReactionSet</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1_reaction_set.js b/docs/html/classgridfire_1_1_reaction_set.js
new file mode 100644
index 00000000..be40af71
--- /dev/null
+++ b/docs/html/classgridfire_1_1_reaction_set.js
@@ -0,0 +1,33 @@
+var classgridfire_1_1_reaction_set =
+[
+    [ "ReactionSet", "classgridfire_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de", null ],
+    [ "ReactionSet", "classgridfire_1_1_reaction_set.html#a789dee5d93810b85062e59508fe0adea", null ],
+    [ "ReactionSet", "classgridfire_1_1_reaction_set.html#ab9edff40316b42ce41b2f895962c1041", null ],
+    [ "ReactionSet", "classgridfire_1_1_reaction_set.html#acfe2341ae1f016ad82098b6f5a1efc45", null ],
+    [ "add_reaction", "classgridfire_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1", null ],
+    [ "add_reaction", "classgridfire_1_1_reaction_set.html#ad7e95562ea0860bf492b447341f41fb5", null ],
+    [ "begin", "classgridfire_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613", null ],
+    [ "begin", "classgridfire_1_1_reaction_set.html#adb73fe9ff0178359409e2bea46a620c2", null ],
+    [ "clear", "classgridfire_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300", null ],
+    [ "contains", "classgridfire_1_1_reaction_set.html#a2f6b165c86634a68f35032c2267255f8", null ],
+    [ "contains", "classgridfire_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387", null ],
+    [ "contains_product", "classgridfire_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e", null ],
+    [ "contains_reactant", "classgridfire_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2", null ],
+    [ "contains_species", "classgridfire_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a", null ],
+    [ "end", "classgridfire_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987", null ],
+    [ "end", "classgridfire_1_1_reaction_set.html#a436f9c4b8f8a4e115b19728d57d8e105", null ],
+    [ "getReactionSetSpecies", "classgridfire_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b", null ],
+    [ "hash", "classgridfire_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99", null ],
+    [ "operator!=", "classgridfire_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8", null ],
+    [ "operator=", "classgridfire_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a", null ],
+    [ "operator==", "classgridfire_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135", null ],
+    [ "operator[]", "classgridfire_1_1_reaction_set.html#a896b4e492ef596d9174aeda4b59c46cd", null ],
+    [ "operator[]", "classgridfire_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b", null ],
+    [ "remove_reaction", "classgridfire_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd", null ],
+    [ "size", "classgridfire_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf", null ],
+    [ "operator<<", "classgridfire_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20", null ],
+    [ "m_id", "classgridfire_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111", null ],
+    [ "m_logger", "classgridfire_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb", null ],
+    [ "m_reactionNameMap", "classgridfire_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44", null ],
+    [ "m_reactions", "classgridfire_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html b/docs/html/classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html
index 532a95ba..bdbc45d1 100644
--- a/docs/html/classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html
+++ b/docs/html/classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html
@@ -253,7 +253,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
diff --git a/docs/html/classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html b/docs/html/classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html
index 7c17e1b5..8492e3f6 100644
--- a/docs/html/classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html
+++ b/docs/html/classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html
@@ -216,7 +216,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel explicit">explicit</span></span>  </td>
+<span class="mlabels"><span class="mlabel explicit">explicit</span><span class="mlabel default">default</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -245,7 +245,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -276,7 +276,7 @@ Private Attributes</h2></td></tr>
 <p><b>Usage</b> </p><div class="fragment"><div class="line"><a class="code hl_function" href="#afc8ed91e8c98205c505e3d9f0cff1993">SimpleReactionListFileParser</a> parser;</div>
 <div class="line"><a class="code hl_typedef" href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">ParsedNetworkData</a> data = parser.<a class="code hl_function" href="#a4df01e3a93e1291d2cde0458545325f8">parse</a>(<span class="stringliteral">&quot;reactions.txt&quot;</span>);</div>
 <div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_a4df01e3a93e1291d2cde0458545325f8"><div class="ttname"><a href="#a4df01e3a93e1291d2cde0458545325f8">gridfire::io::SimpleReactionListFileParser::parse</a></div><div class="ttdeci">ParsedNetworkData parse(const std::string &amp;filename) const override</div><div class="ttdoc">Parses a simple reaction list file.</div><div class="ttdef"><b>Definition</b> network_file.cpp:44</div></div>
-<div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_afc8ed91e8c98205c505e3d9f0cff1993"><div class="ttname"><a href="#afc8ed91e8c98205c505e3d9f0cff1993">gridfire::io::SimpleReactionListFileParser::SimpleReactionListFileParser</a></div><div class="ttdeci">SimpleReactionListFileParser()</div><div class="ttdoc">Constructs a SimpleReactionListFileParser.</div><div class="ttdef"><b>Definition</b> network_file.cpp:42</div></div>
+<div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_afc8ed91e8c98205c505e3d9f0cff1993"><div class="ttname"><a href="#afc8ed91e8c98205c505e3d9f0cff1993">gridfire::io::SimpleReactionListFileParser::SimpleReactionListFileParser</a></div><div class="ttdeci">SimpleReactionListFileParser()</div><div class="ttdoc">Constructs a SimpleReactionListFileParser.</div></div>
 <div class="ttc" id="anamespacegridfire_1_1io_html_abcbdcbd13cfa8c9fbe1b48e8ee2cc352"><div class="ttname"><a href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">gridfire::io::ParsedNetworkData</a></div><div class="ttdeci">std::vector&lt; std::string &gt; ParsedNetworkData</div><div class="ttdef"><b>Definition</b> network_file.h:12</div></div>
 </div><!-- fragment --> 
 <p>Implements <a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf">gridfire::io::NetworkFileParser</a>.</p>
diff --git a/docs/html/classgridfire_1_1partition_1_1_composite_partition_function.html b/docs/html/classgridfire_1_1partition_1_1_composite_partition_function.html
index 9ad45dfd..0ca9a294 100644
--- a/docs/html/classgridfire_1_1partition_1_1_composite_partition_function.html
+++ b/docs/html/classgridfire_1_1partition_1_1_composite_partition_function.html
@@ -372,7 +372,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel private">private</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
diff --git a/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function-members.html b/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function-members.html
index 88d80263..5679e5d3 100644
--- a/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function-members.html
+++ b/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function-members.html
@@ -111,7 +111,7 @@ $(function(){initNavTree('classgridfire_1_1partition_1_1_ground_state_partition_
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a8afa2aee993eb3ed8d01c887d39b57eb">GroundStatePartitionFunction</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html">gridfire::partition::GroundStatePartitionFunction</a></td><td class="entry"></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245">m_ground_state_spin</a></td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html">gridfire::partition::GroundStatePartitionFunction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html">gridfire::partition::GroundStatePartitionFunction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a99c80e2f4ba36e88e08e2abd650a08fb">make_key</a>(const int z, const int a)</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html">gridfire::partition::GroundStatePartitionFunction</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0e75ec9b97529783e07953aaf7d70f68">make_key</a>(int z, int a)</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html">gridfire::partition::GroundStatePartitionFunction</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd">supports</a>(const int z, const int a) const override</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html">gridfire::partition::GroundStatePartitionFunction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250">type</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html">gridfire::partition::GroundStatePartitionFunction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a197a0663dcfb4ab4be3b0e14b98391db">~PartitionFunction</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1_partition_function.html">gridfire::partition::PartitionFunction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
diff --git a/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function.html b/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function.html
index b0cecb92..b2667180 100644
--- a/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function.html
+++ b/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function.html
@@ -143,8 +143,8 @@ Public Member Functions</h2></td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-static-methods" name="pri-static-methods"></a>
 Static Private Member Functions</h2></td></tr>
-<tr class="memitem:a99c80e2f4ba36e88e08e2abd650a08fb" id="r_a99c80e2f4ba36e88e08e2abd650a08fb"><td class="memItemLeft" align="right" valign="top">static constexpr int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a99c80e2f4ba36e88e08e2abd650a08fb">make_key</a> (const int z, const int a)</td></tr>
-<tr class="separator:a99c80e2f4ba36e88e08e2abd650a08fb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0e75ec9b97529783e07953aaf7d70f68" id="r_a0e75ec9b97529783e07953aaf7d70f68"><td class="memItemLeft" align="right" valign="top">static constexpr int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0e75ec9b97529783e07953aaf7d70f68">make_key</a> (int z, int a)</td></tr>
+<tr class="separator:a0e75ec9b97529783e07953aaf7d70f68"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
 Private Attributes</h2></td></tr>
@@ -200,7 +200,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -242,7 +242,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -300,7 +300,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -331,8 +331,8 @@ Private Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a99c80e2f4ba36e88e08e2abd650a08fb" name="a99c80e2f4ba36e88e08e2abd650a08fb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a99c80e2f4ba36e88e08e2abd650a08fb">&#9670;&#160;</a></span>make_key()</h2>
+<a id="a0e75ec9b97529783e07953aaf7d70f68" name="a0e75ec9b97529783e07953aaf7d70f68"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0e75ec9b97529783e07953aaf7d70f68">&#9670;&#160;</a></span>make_key()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -343,12 +343,12 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">int gridfire::partition::GroundStatePartitionFunction::make_key </td>
           <td>(</td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>z</em></span>, </td>
+          <td class="paramtype">int</td>          <td class="paramname"><span class="paramname"><em>z</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>a</em></span>&#160;)</td>
+          <td class="paramtype">int</td>          <td class="paramname"><span class="paramname"><em>a</em></span>&#160;)</td>
         </tr>
       </table>
   </td>
@@ -359,7 +359,7 @@ Private Attributes</h2></td></tr>
 </div><div class="memdoc">
 <pre class="fragment">       @brief Generate a unique lookup key for an isotope.
 </pre><ul>
-<li>* Combines atomic number z and mass number a into a single integer. <dl class="params"><dt>Parameters</dt><dd>
+<li>* Combines atomic number z and mass number an into a single integer. <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
     <tr><td class="paramname">z</td><td>Proton number of the isotope. </td></tr>
     <tr><td class="paramname">a</td><td>Mass number of the isotope; should be &lt; 1000 to avoid collisions. </td></tr>
@@ -396,7 +396,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -437,7 +437,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
diff --git a/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function.js b/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function.js
index 4d36dc29..7cfcc436 100644
--- a/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function.js
+++ b/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function.js
@@ -4,7 +4,7 @@ var classgridfire_1_1partition_1_1_ground_state_partition_function =
     [ "clone", "classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4", null ],
     [ "evaluate", "classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5", null ],
     [ "evaluateDerivative", "classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0eff10c7b134d9d4081ad72bbc785c5b", null ],
-    [ "make_key", "classgridfire_1_1partition_1_1_ground_state_partition_function.html#a99c80e2f4ba36e88e08e2abd650a08fb", null ],
+    [ "make_key", "classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0e75ec9b97529783e07953aaf7d70f68", null ],
     [ "supports", "classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd", null ],
     [ "type", "classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250", null ],
     [ "m_ground_state_spin", "classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245", null ],
diff --git a/docs/html/classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html b/docs/html/classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html
index b6b1e476..ba38ca35 100644
--- a/docs/html/classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html
+++ b/docs/html/classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html
@@ -274,7 +274,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -314,7 +314,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -369,7 +369,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -424,7 +424,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel private">private</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -554,7 +554,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -592,7 +592,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator-members.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator-members.html
new file mode 100644
index 00000000..3a105bec
--- /dev/null
+++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator-members.html
@@ -0,0 +1,124 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakRateInterpolator Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">gridfire::rates::weak::WeakRateInterpolator</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a976f84b6f6e33b5f3dd733a771afd7ba">available_isotopes</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">gridfire::rates::weak::WeakRateInterpolator</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a48cec4c8f1e117f73d7e88c3597b4d16">get_rate_derivatives</a>(uint16_t A, uint8_t Z, double t9, double log_rhoYe, double mu_e) const</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">gridfire::rates::weak::WeakRateInterpolator</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ae36a65c29c34b004111d266dc668107b">get_rates</a>(uint16_t A, uint8_t Z, double t9, double log_rhoYe, double mu_e) const</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">gridfire::rates::weak::WeakRateInterpolator</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a7a01f956eccd3a0a90dd08984ca3f009">m_rate_table</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">gridfire::rates::weak::WeakRateInterpolator</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ac73e9476c89ec7066999b0986bc0d9c1">pack_isotope_id</a>(uint16_t A, uint8_t Z)</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">gridfire::rates::weak::WeakRateInterpolator</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#afd3e0e1c5edaf12609b5fc81c379e3e5">RowDataTable</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">gridfire::rates::weak::WeakRateInterpolator</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a1efafe82d25d36b93a60a6fccbd5ca3d">WeakRateInterpolator</a>(const RowDataTable &amp;raw_data)</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">gridfire::rates::weak::WeakRateInterpolator</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html
new file mode 100644
index 00000000..a5f57e02
--- /dev/null
+++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html
@@ -0,0 +1,441 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::rates::weak::WeakRateInterpolator Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-types">Public Types</a> &#124;
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-static-methods">Static Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakRateInterpolator Class Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>3D table interpolator for tabulated weak reaction data by isotope.  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;weak_interpolator.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-types" name="pub-types"></a>
+Public Types</h2></td></tr>
+<tr class="memitem:afd3e0e1c5edaf12609b5fc81c379e3e5" id="r_afd3e0e1c5edaf12609b5fc81c379e3e5"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afd3e0e1c5edaf12609b5fc81c379e3e5">RowDataTable</a> = std::array&lt;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">RateDataRow</a>, 77400&gt;</td></tr>
+<tr class="memdesc:afd3e0e1c5edaf12609b5fc81c379e3e5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Raw weak-rate table type expected by the constructor.  <br /></td></tr>
+<tr class="separator:afd3e0e1c5edaf12609b5fc81c379e3e5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a1efafe82d25d36b93a60a6fccbd5ca3d" id="r_a1efafe82d25d36b93a60a6fccbd5ca3d"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1efafe82d25d36b93a60a6fccbd5ca3d">WeakRateInterpolator</a> (const <a class="el" href="#afd3e0e1c5edaf12609b5fc81c379e3e5">RowDataTable</a> &amp;raw_data)</td></tr>
+<tr class="memdesc:a1efafe82d25d36b93a60a6fccbd5ca3d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct the interpolator from raw weak-rate rows.  <br /></td></tr>
+<tr class="separator:a1efafe82d25d36b93a60a6fccbd5ca3d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a976f84b6f6e33b5f3dd733a771afd7ba" id="r_a976f84b6f6e33b5f3dd733a771afd7ba"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a976f84b6f6e33b5f3dd733a771afd7ba">available_isotopes</a> () const</td></tr>
+<tr class="memdesc:a976f84b6f6e33b5f3dd733a771afd7ba"><td class="mdescLeft">&#160;</td><td class="mdescRight">List isotopes for which tables are available.  <br /></td></tr>
+<tr class="separator:a976f84b6f6e33b5f3dd733a771afd7ba"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae36a65c29c34b004111d266dc668107b" id="r_ae36a65c29c34b004111d266dc668107b"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">WeakRatePayload</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html">InterpolationError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae36a65c29c34b004111d266dc668107b">get_rates</a> (uint16_t A, uint8_t Z, double t9, double log_rhoYe, double mu_e) const</td></tr>
+<tr class="memdesc:ae36a65c29c34b004111d266dc668107b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Trilinear interpolation of weak-rate payload at a state.  <br /></td></tr>
+<tr class="separator:ae36a65c29c34b004111d266dc668107b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a48cec4c8f1e117f73d7e88c3597b4d16" id="r_a48cec4c8f1e117f73d7e88c3597b4d16"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html">WeakRateDerivatives</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html">InterpolationError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a48cec4c8f1e117f73d7e88c3597b4d16">get_rate_derivatives</a> (uint16_t A, uint8_t Z, double t9, double log_rhoYe, double mu_e) const</td></tr>
+<tr class="memdesc:a48cec4c8f1e117f73d7e88c3597b4d16"><td class="mdescLeft">&#160;</td><td class="mdescRight">Finite-difference partial derivatives of the log10() fields.  <br /></td></tr>
+<tr class="separator:a48cec4c8f1e117f73d7e88c3597b4d16"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-static-methods" name="pri-static-methods"></a>
+Static Private Member Functions</h2></td></tr>
+<tr class="memitem:ac73e9476c89ec7066999b0986bc0d9c1" id="r_ac73e9476c89ec7066999b0986bc0d9c1"><td class="memItemLeft" align="right" valign="top">static uint32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac73e9476c89ec7066999b0986bc0d9c1">pack_isotope_id</a> (uint16_t A, uint8_t Z)</td></tr>
+<tr class="memdesc:ac73e9476c89ec7066999b0986bc0d9c1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pack (A,Z) into a 32-bit key used for the internal map.  <br /></td></tr>
+<tr class="separator:ac73e9476c89ec7066999b0986bc0d9c1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a7a01f956eccd3a0a90dd08984ca3f009" id="r_a7a01f956eccd3a0a90dd08984ca3f009"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; uint32_t, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html">IsotopeGrid</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7a01f956eccd3a0a90dd08984ca3f009">m_rate_table</a></td></tr>
+<tr class="memdesc:a7a01f956eccd3a0a90dd08984ca3f009"><td class="mdescLeft">&#160;</td><td class="mdescRight">Per-isotope grids over (T9, log10(rho*Ye), mu_e) with payloads at lattice nodes.  <br /></td></tr>
+<tr class="separator:a7a01f956eccd3a0a90dd08984ca3f009"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>3D table interpolator for tabulated weak reaction data by isotope. </p>
+<p>Builds per-isotope 3D grids over (T9, log10(rho*Ye), mu_e) and provides:</p><ul>
+<li>Trilinear interpolation of the tabulated log10(rate) and neutrino-loss fields into a <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html" title="Interpolated weak-rate payload at a single state.">WeakRatePayload</a> via <a class="el" href="#ae36a65c29c34b004111d266dc668107b" title="Trilinear interpolation of weak-rate payload at a state.">get_rates()</a>.</li>
+<li>Finite-difference estimates of partial derivatives via <a class="el" href="#a48cec4c8f1e117f73d7e88c3597b4d16" title="Finite-difference partial derivatives of the log10() fields.">get_rate_derivatives()</a>.</li>
+</ul>
+<p>Implementation summary (constructor): rows are grouped by (A,Z), then each group's unique axis values are collected and sorted to form the three axes; the 3D payload array is populated at each lattice point with the 6 log10() fields from the raw table. </p>
+</div><h2 class="groupheader">Member Typedef Documentation</h2>
+<a id="afd3e0e1c5edaf12609b5fc81c379e3e5" name="afd3e0e1c5edaf12609b5fc81c379e3e5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afd3e0e1c5edaf12609b5fc81c379e3e5">&#9670;&#160;</a></span>RowDataTable</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">using <a class="el" href="#afd3e0e1c5edaf12609b5fc81c379e3e5">gridfire::rates::weak::WeakRateInterpolator::RowDataTable</a> = std::array&lt;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">RateDataRow</a>, 77400&gt;</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Raw weak-rate table type expected by the constructor. </p>
+<p>The size must match the number of rows compiled into the weak-rate library. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a1efafe82d25d36b93a60a6fccbd5ca3d" name="a1efafe82d25d36b93a60a6fccbd5ca3d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1efafe82d25d36b93a60a6fccbd5ca3d">&#9670;&#160;</a></span>WeakRateInterpolator()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::rates::weak::WeakRateInterpolator::WeakRateInterpolator </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="#afd3e0e1c5edaf12609b5fc81c379e3e5">RowDataTable</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>raw_data</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel explicit">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct the interpolator from raw weak-rate rows. </p>
+<p>Groups rows by isotope (A,Z), extracts unique sorted axes for T9, log10(rho*Ye), and mu_e, and fills an internal regular grid with the log10(rate) and neutrino-loss payloads at each node. No interpolation occurs at construction time. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a976f84b6f6e33b5f3dd733a771afd7ba" name="a976f84b6f6e33b5f3dd733a771afd7ba"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a976f84b6f6e33b5f3dd733a771afd7ba">&#9670;&#160;</a></span>available_isotopes()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; fourdst::atomic::Species &gt; gridfire::rates::weak::WeakRateInterpolator::available_isotopes </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>List isotopes for which tables are available. </p>
+<dl class="section return"><dt>Returns</dt><dd>Vector of available Species (A,Z) derived from internal tables. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If any packed (A,Z) cannot be converted to Species. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><a class="code hl_function" href="#a1efafe82d25d36b93a60a6fccbd5ca3d">WeakRateInterpolator</a> interp(rows);</div>
+<div class="line"><span class="keyword">auto</span> isotopes = interp.available_isotopes();</div>
+<div class="ttc" id="aclassgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator_html_a1efafe82d25d36b93a60a6fccbd5ca3d"><div class="ttname"><a href="#a1efafe82d25d36b93a60a6fccbd5ca3d">gridfire::rates::weak::WeakRateInterpolator::WeakRateInterpolator</a></div><div class="ttdeci">WeakRateInterpolator(const RowDataTable &amp;raw_data)</div><div class="ttdoc">Construct the interpolator from raw weak-rate rows.</div><div class="ttdef"><b>Definition</b> weak_interpolator.cpp:18</div></div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<a id="a48cec4c8f1e117f73d7e88c3597b4d16" name="a48cec4c8f1e117f73d7e88c3597b4d16"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a48cec4c8f1e117f73d7e88c3597b4d16">&#9670;&#160;</a></span>get_rate_derivatives()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html">WeakRateDerivatives</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html">InterpolationError</a> &gt; gridfire::rates::weak::WeakRateInterpolator::get_rate_derivatives </td>
+          <td>(</td>
+          <td class="paramtype">uint16_t</td>          <td class="paramname"><span class="paramname"><em>A</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">uint8_t</td>          <td class="paramname"><span class="paramname"><em>Z</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>t9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>log_rhoYe</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>mu_e</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Finite-difference partial derivatives of the log10() fields. </p>
+<p>Uses central differences with small fixed (1e-6) perturbations in each variable (T9, log10(rho*Ye), mu_e) and returns arrays of d(log10(field))/d(var) for all fields. If any perturbed state falls outside the table, returns a BOUNDS_ERROR with per-axis bounds; if the isotope is unknown, returns UNKNOWN_SPECIES_ERROR.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">A</td><td>Mass number of the isotope. </td></tr>
+    <tr><td class="paramname">Z</td><td>Proton number of the isotope. </td></tr>
+    <tr><td class="paramname">t9</td><td>Temperature in GK (10^9 K). </td></tr>
+    <tr><td class="paramname">log_rhoYe</td><td>Log10 of rho*Ye (cgs density times electron fraction). </td></tr>
+    <tr><td class="paramname">mu_e</td><td>Electron chemical potential (MeV). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>expected&lt;WeakRateDerivatives, InterpolationError&gt;: derivative payload on success; otherwise an <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html" title="Interpolation error with optional per-axis bounds details.">InterpolationError</a> as described above. </dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keywordflow">if</span> (<span class="keyword">auto</span> d = interp.get_rate_derivatives(52, 26, 3.0, 6.0, 2.0); d) {</div>
+<div class="line">  <span class="comment">// use d-&gt;d_log_beta_minus[0..2], etc.</span></div>
+<div class="line">}</div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<a id="ae36a65c29c34b004111d266dc668107b" name="ae36a65c29c34b004111d266dc668107b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae36a65c29c34b004111d266dc668107b">&#9670;&#160;</a></span>get_rates()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">WeakRatePayload</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html">InterpolationError</a> &gt; gridfire::rates::weak::WeakRateInterpolator::get_rates </td>
+          <td>(</td>
+          <td class="paramtype">uint16_t</td>          <td class="paramname"><span class="paramname"><em>A</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">uint8_t</td>          <td class="paramname"><span class="paramname"><em>Z</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>t9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>log_rhoYe</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>mu_e</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Trilinear interpolation of weak-rate payload at a state. </p>
+<p>Interpolates the 6 log10() fields (rates and neutrino losses) at the given state for the requested isotope. If the isotope is unknown or the state lies outside the tabulated ranges, returns an error via std::expected with detailed bounds info.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">A</td><td>Mass number of the isotope. </td></tr>
+    <tr><td class="paramname">Z</td><td>Proton number of the isotope. </td></tr>
+    <tr><td class="paramname">t9</td><td>Temperature in GK (10^9 K). </td></tr>
+    <tr><td class="paramname">log_rhoYe</td><td>Log10 of rho*Ye (cgs density times electron fraction). </td></tr>
+    <tr><td class="paramname">mu_e</td><td>Electron chemical potential (MeV). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>expected&lt;WeakRatePayload, InterpolationError&gt;: payload on success; InterpolationError::UNKNOWN_SPECIES_ERROR if (A,Z) not present; or InterpolationError::BOUNDS_ERROR if any coordinate is outside the table (with per-axis bounds included). </dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keywordflow">if</span> (<span class="keyword">auto</span> res = interp.get_rates(52, 26, 3.0, 6.0, 2.0); res) {</div>
+<div class="line">  <span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">WeakRatePayload</a>&amp; p = *res;</div>
+<div class="line">} <span class="keywordflow">else</span> {</div>
+<div class="line">  <span class="comment">// inspect res.error().type and optional bounds info</span></div>
+<div class="line">}</div>
+<div class="ttc" id="astructgridfire_1_1rates_1_1weak_1_1_weak_rate_payload_html"><div class="ttname"><a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">gridfire::rates::weak::WeakRatePayload</a></div><div class="ttdoc">Interpolated weak-rate payload at a single state.</div><div class="ttdef"><b>Definition</b> weak_types.h:86</div></div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<a id="ac73e9476c89ec7066999b0986bc0d9c1" name="ac73e9476c89ec7066999b0986bc0d9c1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac73e9476c89ec7066999b0986bc0d9c1">&#9670;&#160;</a></span>pack_isotope_id()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">uint32_t gridfire::rates::weak::WeakRateInterpolator::pack_isotope_id </td>
+          <td>(</td>
+          <td class="paramtype">uint16_t</td>          <td class="paramname"><span class="paramname"><em>A</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">uint8_t</td>          <td class="paramname"><span class="paramname"><em>Z</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel static">static</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Pack (A,Z) into a 32-bit key used for the internal map. </p>
+<p>Layout: (A &lt;&lt; 8) | Z. To unpack, use (key &gt;&gt; 8) for A and (key &amp; 0xFF) for Z. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a7a01f956eccd3a0a90dd08984ca3f009" name="a7a01f956eccd3a0a90dd08984ca3f009"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7a01f956eccd3a0a90dd08984ca3f009">&#9670;&#160;</a></span>m_rate_table</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;uint32_t, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html">IsotopeGrid</a>&gt; gridfire::rates::weak::WeakRateInterpolator::m_rate_table</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Per-isotope grids over (T9, log10(rho*Ye), mu_e) with payloads at lattice nodes. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak__interpolator_8h.html">weak_interpolator.h</a></li>
+<li>src/lib/reaction/weak/<a class="el" href="weak__interpolator_8cpp.html">weak_interpolator.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates.html">rates</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">weak</a></li><li class="navelem"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">WeakRateInterpolator</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.js b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.js
new file mode 100644
index 00000000..c2fe2e6e
--- /dev/null
+++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.js
@@ -0,0 +1,10 @@
+var classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator =
+[
+    [ "RowDataTable", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#afd3e0e1c5edaf12609b5fc81c379e3e5", null ],
+    [ "WeakRateInterpolator", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a1efafe82d25d36b93a60a6fccbd5ca3d", null ],
+    [ "available_isotopes", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a976f84b6f6e33b5f3dd733a771afd7ba", null ],
+    [ "get_rate_derivatives", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a48cec4c8f1e117f73d7e88c3597b4d16", null ],
+    [ "get_rates", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ae36a65c29c34b004111d266dc668107b", null ],
+    [ "pack_isotope_id", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ac73e9476c89ec7066999b0986bc0d9c1", null ],
+    [ "m_rate_table", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a7a01f956eccd3a0a90dd08984ca3f009", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction-members.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction-members.html
new file mode 100644
index 00000000..65ca3bd5
--- /dev/null
+++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction-members.html
@@ -0,0 +1,156 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReaction Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a6e567323ca019eadcbb9dbb814ebeb0b">all_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a091d6d4aa59f788c97f9b5481f46f1b5">calculate_energy_generation_rate</a>(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#af515e3587a1050c4bc59657696be5f9b">calculate_energy_generation_rate</a>(const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac2d5366d4b5766413db34558dbce3cb3">calculate_log_rate_partial_deriv_wrt_T9</a>(double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;composition) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a05df0657efed55eb4262c7834d81400a">calculate_rate</a>(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90ca346e2321516656b83d863416671e">calculate_rate</a>(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aa28f151d4ce14e0d6fcbecb07d03cd28">calculate_rate</a>(T T9, T rho, T Ye, T mue, const std::vector&lt; T &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac10e1451d20876f6eab199e127f213c7">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a745b161968f37873b5d40fe6bf9d2118">contains</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a957b5bfe70e536290ef677a7c5b6643f">contains_product</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a98095e6536d9a6434c5955f4c169d505">contains_reactant</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a7f0d21c80fbbf94ead613e678d44b835">get_log_neutrino_loss_from_payload</a>(const WeakRatePayload &amp;payload) const</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a14555633289fc3822e927afca7401e49">get_log_rate_from_payload</a>(const WeakRatePayload &amp;payload) const</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aefc75b3149bee2da878177279ad375da">getWeakRateInterpolator</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad2ba6b584cb2df7c15633fca81ce6af1">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad01a15d95878c9edbf57cd9045c4413b">id</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90b62d922d91832859516450cf8e3876">is_reverse</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a4f2bf61b35566e439ac8a48da265d215">m_atomic</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2f0ee4c0d52db0f58781f90dd39dc0f7">m_constants</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a79877bd387bd891e602adff3f99cb4c5">m_id</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#adf203cbae7d7afcd274020b5210b426b">m_interpolator</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aee395d13ed3a515d5c1d69bedffca5de">m_product</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2567545c89eb847a15909b02fa0f383e">m_product_a</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ab1be1d3010ff539b8a911506734fd9cf">m_product_z</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aeaceef054714e2a9667986406107ba3a">m_reactant</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a37dfb1d460e78e81a6def62e7217e6f8">m_reactant_a</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a3d1b52076e102d07acb7200a7ee99165">m_reactant_z</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a92c3590161c63c6ed4e7650d2b7beee3">m_type</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1210917ca1727ea474bb606cf8279edb">num_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a5c60feacb0ac48b35323d9f688315316">product_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aed0ea28ed3ba96a9f86aa9db947ec01c">products</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#afedb724bf9f1c8fc91d853f2bedb10cb">qValue</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aae06ff559026e3ce242a42cdd888c5a0">reactant_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1362d46630f30203027093e35883d1b1">reactants</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a8bf7dc26d9f1375625df99bceba08a44">stoichiometry</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1f4acfdb39bb861aaee9f3f28cfc406e">stoichiometry</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aade329265a26bdc005c0793ba7a36ab2">type</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a222c0662bf5323037c9fdddfb929d4f7">WeakReaction</a>(const fourdst::atomic::Species &amp;species, WeakReactionType type, const WeakRateInterpolator &amp;interpolator)</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html
new file mode 100644
index 00000000..a6b0ddf0
--- /dev/null
+++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html
@@ -0,0 +1,1567 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::rates::weak::WeakReaction Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReaction Class Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Concrete <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> representing a single weak process (beta±, e−/e+ capture).  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;weak.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::rates::weak::WeakReaction:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.png" usemap="#gridfire::rates::weak::WeakReaction_map" alt=""/>
+  <map id="gridfire::rates::weak::WeakReaction_map" name="gridfire::rates::weak::WeakReaction_map">
+<area href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source." alt="gridfire::reaction::Reaction" shape="rect" coords="0,0,208,24"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html">AtomicWeakRate</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">CppAD atomic that wraps weak-rate interpolation for AD evaluation.  <a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">constants</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a222c0662bf5323037c9fdddfb929d4f7" id="r_a222c0662bf5323037c9fdddfb929d4f7"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a222c0662bf5323037c9fdddfb929d4f7">WeakReaction</a> (const fourdst::atomic::Species &amp;species, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a> <a class="el" href="#aade329265a26bdc005c0793ba7a36ab2">type</a>, const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">WeakRateInterpolator</a> &amp;interpolator)</td></tr>
+<tr class="memdesc:a222c0662bf5323037c9fdddfb929d4f7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html" title="Concrete Reaction representing a single weak process (beta±, e−/e+ capture).">WeakReaction</a> for a specific weak channel and parent species.  <br /></td></tr>
+<tr class="separator:a222c0662bf5323037c9fdddfb929d4f7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a05df0657efed55eb4262c7834d81400a" id="r_a05df0657efed55eb4262c7834d81400a"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a05df0657efed55eb4262c7834d81400a">calculate_rate</a> (double <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755">T9</a>, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td></tr>
+<tr class="memdesc:a05df0657efed55eb4262c7834d81400a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Scalar weak reaction rate λ(T9, rho, Ye, μe) in 1/s.  <br /></td></tr>
+<tr class="separator:a05df0657efed55eb4262c7834d81400a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a90ca346e2321516656b83d863416671e" id="r_a90ca346e2321516656b83d863416671e"><td class="memItemLeft" align="right" valign="top">CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a90ca346e2321516656b83d863416671e">calculate_rate</a> (CppAD::AD&lt; double &gt; <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755">T9</a>, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td></tr>
+<tr class="memdesc:a90ca346e2321516656b83d863416671e"><td class="mdescLeft">&#160;</td><td class="mdescRight">AD-enabled weak reaction rate λ(T9, rho, Ye, μe) in 1/s.  <br /></td></tr>
+<tr class="separator:a90ca346e2321516656b83d863416671e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad01a15d95878c9edbf57cd9045c4413b" id="r_ad01a15d95878c9edbf57cd9045c4413b"><td class="memItemLeft" align="right" valign="top">std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad01a15d95878c9edbf57cd9045c4413b">id</a> () const override</td></tr>
+<tr class="memdesc:ad01a15d95878c9edbf57cd9045c4413b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Unique identifier string for the weak channel.  <br /></td></tr>
+<tr class="separator:ad01a15d95878c9edbf57cd9045c4413b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1362d46630f30203027093e35883d1b1" id="r_a1362d46630f30203027093e35883d1b1"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1362d46630f30203027093e35883d1b1">reactants</a> () const override</td></tr>
+<tr class="memdesc:a1362d46630f30203027093e35883d1b1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reactants list (parent nuclide only).  <br /></td></tr>
+<tr class="separator:a1362d46630f30203027093e35883d1b1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aed0ea28ed3ba96a9f86aa9db947ec01c" id="r_aed0ea28ed3ba96a9f86aa9db947ec01c"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aed0ea28ed3ba96a9f86aa9db947ec01c">products</a> () const override</td></tr>
+<tr class="memdesc:aed0ea28ed3ba96a9f86aa9db947ec01c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Products list (daughter nuclide only).  <br /></td></tr>
+<tr class="separator:aed0ea28ed3ba96a9f86aa9db947ec01c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a745b161968f37873b5d40fe6bf9d2118" id="r_a745b161968f37873b5d40fe6bf9d2118"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a745b161968f37873b5d40fe6bf9d2118">contains</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a745b161968f37873b5d40fe6bf9d2118"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if a species participates in this weak reaction.  <br /></td></tr>
+<tr class="separator:a745b161968f37873b5d40fe6bf9d2118"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a98095e6536d9a6434c5955f4c169d505" id="r_a98095e6536d9a6434c5955f4c169d505"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a98095e6536d9a6434c5955f4c169d505">contains_reactant</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a98095e6536d9a6434c5955f4c169d505"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if a species is the reactant (parent).  <br /></td></tr>
+<tr class="separator:a98095e6536d9a6434c5955f4c169d505"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a957b5bfe70e536290ef677a7c5b6643f" id="r_a957b5bfe70e536290ef677a7c5b6643f"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a957b5bfe70e536290ef677a7c5b6643f">contains_product</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a957b5bfe70e536290ef677a7c5b6643f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if a species is the product (daughter).  <br /></td></tr>
+<tr class="separator:a957b5bfe70e536290ef677a7c5b6643f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6e567323ca019eadcbb9dbb814ebeb0b" id="r_a6e567323ca019eadcbb9dbb814ebeb0b"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6e567323ca019eadcbb9dbb814ebeb0b">all_species</a> () const override</td></tr>
+<tr class="memdesc:a6e567323ca019eadcbb9dbb814ebeb0b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of both parent and daughter species.  <br /></td></tr>
+<tr class="separator:a6e567323ca019eadcbb9dbb814ebeb0b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aae06ff559026e3ce242a42cdd888c5a0" id="r_aae06ff559026e3ce242a42cdd888c5a0"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aae06ff559026e3ce242a42cdd888c5a0">reactant_species</a> () const override</td></tr>
+<tr class="memdesc:aae06ff559026e3ce242a42cdd888c5a0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Singleton set containing only the parent species.  <br /></td></tr>
+<tr class="separator:aae06ff559026e3ce242a42cdd888c5a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5c60feacb0ac48b35323d9f688315316" id="r_a5c60feacb0ac48b35323d9f688315316"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5c60feacb0ac48b35323d9f688315316">product_species</a> () const override</td></tr>
+<tr class="memdesc:a5c60feacb0ac48b35323d9f688315316"><td class="mdescLeft">&#160;</td><td class="mdescRight">Singleton set containing only the daughter species.  <br /></td></tr>
+<tr class="separator:a5c60feacb0ac48b35323d9f688315316"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1210917ca1727ea474bb606cf8279edb" id="r_a1210917ca1727ea474bb606cf8279edb"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1210917ca1727ea474bb606cf8279edb">num_species</a> () const override</td></tr>
+<tr class="memdesc:a1210917ca1727ea474bb606cf8279edb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of unique species involved (always 2 for weak reactions).  <br /></td></tr>
+<tr class="separator:a1210917ca1727ea474bb606cf8279edb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8bf7dc26d9f1375625df99bceba08a44" id="r_a8bf7dc26d9f1375625df99bceba08a44"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, int &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8bf7dc26d9f1375625df99bceba08a44">stoichiometry</a> () const override</td></tr>
+<tr class="memdesc:a8bf7dc26d9f1375625df99bceba08a44"><td class="mdescLeft">&#160;</td><td class="mdescRight">Full stoichiometry map: parent -1, daughter +1.  <br /></td></tr>
+<tr class="separator:a8bf7dc26d9f1375625df99bceba08a44"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1f4acfdb39bb861aaee9f3f28cfc406e" id="r_a1f4acfdb39bb861aaee9f3f28cfc406e"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1f4acfdb39bb861aaee9f3f28cfc406e">stoichiometry</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a1f4acfdb39bb861aaee9f3f28cfc406e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stoichiometric coefficient for a species: -1 (parent), +1 (daughter), 0 otherwise.  <br /></td></tr>
+<tr class="separator:a1f4acfdb39bb861aaee9f3f28cfc406e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad2ba6b584cb2df7c15633fca81ce6af1" id="r_ad2ba6b584cb2df7c15633fca81ce6af1"><td class="memItemLeft" align="right" valign="top">uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad2ba6b584cb2df7c15633fca81ce6af1">hash</a> (uint64_t seed) const override</td></tr>
+<tr class="memdesc:ad2ba6b584cb2df7c15633fca81ce6af1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Content-based 64-bit hash for this reaction.  <br /></td></tr>
+<tr class="separator:ad2ba6b584cb2df7c15633fca81ce6af1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afedb724bf9f1c8fc91d853f2bedb10cb" id="r_afedb724bf9f1c8fc91d853f2bedb10cb"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afedb724bf9f1c8fc91d853f2bedb10cb">qValue</a> () const override</td></tr>
+<tr class="memdesc:afedb724bf9f1c8fc91d853f2bedb10cb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Q-value (MeV) based on nuclear mass differences and channel.  <br /></td></tr>
+<tr class="separator:afedb724bf9f1c8fc91d853f2bedb10cb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a091d6d4aa59f788c97f9b5481f46f1b5" id="r_a091d6d4aa59f788c97f9b5481f46f1b5"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a091d6d4aa59f788c97f9b5481f46f1b5">calculate_energy_generation_rate</a> (double <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755">T9</a>, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td></tr>
+<tr class="memdesc:a091d6d4aa59f788c97f9b5481f46f1b5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Net energy generation rate (MeV/s) for this weak reaction.  <br /></td></tr>
+<tr class="separator:a091d6d4aa59f788c97f9b5481f46f1b5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af515e3587a1050c4bc59657696be5f9b" id="r_af515e3587a1050c4bc59657696be5f9b"><td class="memItemLeft" align="right" valign="top">CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af515e3587a1050c4bc59657696be5f9b">calculate_energy_generation_rate</a> (const CppAD::AD&lt; double &gt; &amp;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755">T9</a>, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td></tr>
+<tr class="memdesc:af515e3587a1050c4bc59657696be5f9b"><td class="mdescLeft">&#160;</td><td class="mdescRight">AD-enabled net energy generation rate (MeV/s).  <br /></td></tr>
+<tr class="separator:af515e3587a1050c4bc59657696be5f9b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac2d5366d4b5766413db34558dbce3cb3" id="r_ac2d5366d4b5766413db34558dbce3cb3"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac2d5366d4b5766413db34558dbce3cb3">calculate_log_rate_partial_deriv_wrt_T9</a> (double <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755">T9</a>, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;composition) const override</td></tr>
+<tr class="memdesc:ac2d5366d4b5766413db34558dbce3cb3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logarithmic temperature sensitivity of the rate at the given state.  <br /></td></tr>
+<tr class="separator:ac2d5366d4b5766413db34558dbce3cb3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aade329265a26bdc005c0793ba7a36ab2" id="r_aade329265a26bdc005c0793ba7a36ab2"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">reaction::ReactionType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aade329265a26bdc005c0793ba7a36ab2">type</a> () const override</td></tr>
+<tr class="memdesc:aade329265a26bdc005c0793ba7a36ab2"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> type tag for runtime dispatch.  <br /></td></tr>
+<tr class="separator:aade329265a26bdc005c0793ba7a36ab2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac10e1451d20876f6eab199e127f213c7" id="r_ac10e1451d20876f6eab199e127f213c7"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac10e1451d20876f6eab199e127f213c7">clone</a> () const override</td></tr>
+<tr class="memdesc:ac10e1451d20876f6eab199e127f213c7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Polymorphic deep copy.  <br /></td></tr>
+<tr class="separator:ac10e1451d20876f6eab199e127f213c7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a90b62d922d91832859516450cf8e3876" id="r_a90b62d922d91832859516450cf8e3876"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a90b62d922d91832859516450cf8e3876">is_reverse</a> () const override</td></tr>
+<tr class="memdesc:a90b62d922d91832859516450cf8e3876"><td class="mdescLeft">&#160;</td><td class="mdescRight">Weak reactions are parameterized in the forward sense (never reverse).  <br /></td></tr>
+<tr class="separator:a90b62d922d91832859516450cf8e3876"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aefc75b3149bee2da878177279ad375da" id="r_aefc75b3149bee2da878177279ad375da"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">WeakRateInterpolator</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aefc75b3149bee2da878177279ad375da">getWeakRateInterpolator</a> () const</td></tr>
+<tr class="memdesc:aefc75b3149bee2da878177279ad375da"><td class="mdescLeft">&#160;</td><td class="mdescRight">Access the underlying rate interpolator used by this reaction.  <br /></td></tr>
+<tr class="separator:aefc75b3149bee2da878177279ad375da"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1reaction_1_1_reaction"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1reaction_1_1_reaction')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td></tr>
+<tr class="memitem:ab1860df84843be70f97469761e11ab6a inherit pub_methods_classgridfire_1_1reaction_1_1_reaction" id="r_ab1860df84843be70f97469761e11ab6a"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a> ()=default</td></tr>
+<tr class="memdesc:ab1860df84843be70f97469761e11ab6a inherit pub_methods_classgridfire_1_1reaction_1_1_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for correct polymorphic cleanup.  <br /></td></tr>
+<tr class="separator:ab1860df84843be70f97469761e11ab6a inherit pub_methods_classgridfire_1_1reaction_1_1_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:aa28f151d4ce14e0d6fcbecb07d03cd28" id="r_aa28f151d4ce14e0d6fcbecb07d03cd28"><td class="memTemplParams" colspan="2">template&lt;IsArithmeticOrAD T&gt; </td></tr>
+<tr class="memitem:aa28f151d4ce14e0d6fcbecb07d03cd28"><td class="memTemplItemLeft" align="right" valign="top">T&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#aa28f151d4ce14e0d6fcbecb07d03cd28">calculate_rate</a> (T <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755">T9</a>, T rho, T Ye, T mue, const std::vector&lt; T &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td></tr>
+<tr class="memdesc:aa28f151d4ce14e0d6fcbecb07d03cd28"><td class="mdescLeft">&#160;</td><td class="mdescRight">Internal unified implementation for scalar/AD rate evaluation.  <br /></td></tr>
+<tr class="separator:aa28f151d4ce14e0d6fcbecb07d03cd28"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a14555633289fc3822e927afca7401e49" id="r_a14555633289fc3822e927afca7401e49"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a14555633289fc3822e927afca7401e49">get_log_rate_from_payload</a> (const <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">WeakRatePayload</a> &amp;payload) const</td></tr>
+<tr class="memdesc:a14555633289fc3822e927afca7401e49"><td class="mdescLeft">&#160;</td><td class="mdescRight">Extract the channel-specific log10(rate) from an interpolated payload. Mapping: β−→log_beta_minus, β+→log_beta_plus, e− capture→log_electron_capture, e+ capture→log_positron_capture.  <br /></td></tr>
+<tr class="separator:a14555633289fc3822e927afca7401e49"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7f0d21c80fbbf94ead613e678d44b835" id="r_a7f0d21c80fbbf94ead613e678d44b835"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7f0d21c80fbbf94ead613e678d44b835">get_log_neutrino_loss_from_payload</a> (const <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">WeakRatePayload</a> &amp;payload) const</td></tr>
+<tr class="memdesc:a7f0d21c80fbbf94ead613e678d44b835"><td class="mdescLeft">&#160;</td><td class="mdescRight">Extract the channel-specific log10(neutrino loss) from a payload. Mapping: β−/e+ capture→log_antineutrino_loss_bd; β+/e− capture→log_neutrino_loss_ec.  <br /></td></tr>
+<tr class="separator:a7f0d21c80fbbf94ead613e678d44b835"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a2f0ee4c0d52db0f58781f90dd39dc0f7" id="r_a2f0ee4c0d52db0f58781f90dd39dc0f7"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">constants</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2f0ee4c0d52db0f58781f90dd39dc0f7">m_constants</a></td></tr>
+<tr class="separator:a2f0ee4c0d52db0f58781f90dd39dc0f7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aeaceef054714e2a9667986406107ba3a" id="r_aeaceef054714e2a9667986406107ba3a"><td class="memItemLeft" align="right" valign="top">fourdst::atomic::Species&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aeaceef054714e2a9667986406107ba3a">m_reactant</a></td></tr>
+<tr class="separator:aeaceef054714e2a9667986406107ba3a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aee395d13ed3a515d5c1d69bedffca5de" id="r_aee395d13ed3a515d5c1d69bedffca5de"><td class="memItemLeft" align="right" valign="top">fourdst::atomic::Species&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aee395d13ed3a515d5c1d69bedffca5de">m_product</a></td></tr>
+<tr class="separator:aee395d13ed3a515d5c1d69bedffca5de"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a37dfb1d460e78e81a6def62e7217e6f8" id="r_a37dfb1d460e78e81a6def62e7217e6f8"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a37dfb1d460e78e81a6def62e7217e6f8">m_reactant_a</a></td></tr>
+<tr class="separator:a37dfb1d460e78e81a6def62e7217e6f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3d1b52076e102d07acb7200a7ee99165" id="r_a3d1b52076e102d07acb7200a7ee99165"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3d1b52076e102d07acb7200a7ee99165">m_reactant_z</a></td></tr>
+<tr class="separator:a3d1b52076e102d07acb7200a7ee99165"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2567545c89eb847a15909b02fa0f383e" id="r_a2567545c89eb847a15909b02fa0f383e"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2567545c89eb847a15909b02fa0f383e">m_product_a</a></td></tr>
+<tr class="separator:a2567545c89eb847a15909b02fa0f383e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab1be1d3010ff539b8a911506734fd9cf" id="r_ab1be1d3010ff539b8a911506734fd9cf"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab1be1d3010ff539b8a911506734fd9cf">m_product_z</a></td></tr>
+<tr class="separator:ab1be1d3010ff539b8a911506734fd9cf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a79877bd387bd891e602adff3f99cb4c5" id="r_a79877bd387bd891e602adff3f99cb4c5"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a79877bd387bd891e602adff3f99cb4c5">m_id</a></td></tr>
+<tr class="separator:a79877bd387bd891e602adff3f99cb4c5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a92c3590161c63c6ed4e7650d2b7beee3" id="r_a92c3590161c63c6ed4e7650d2b7beee3"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a92c3590161c63c6ed4e7650d2b7beee3">m_type</a></td></tr>
+<tr class="separator:a92c3590161c63c6ed4e7650d2b7beee3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adf203cbae7d7afcd274020b5210b426b" id="r_adf203cbae7d7afcd274020b5210b426b"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">WeakRateInterpolator</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#adf203cbae7d7afcd274020b5210b426b">m_interpolator</a></td></tr>
+<tr class="separator:adf203cbae7d7afcd274020b5210b426b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4f2bf61b35566e439ac8a48da265d215" id="r_a4f2bf61b35566e439ac8a48da265d215"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html">AtomicWeakRate</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4f2bf61b35566e439ac8a48da265d215">m_atomic</a></td></tr>
+<tr class="separator:a4f2bf61b35566e439ac8a48da265d215"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Concrete <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> representing a single weak process (beta±, e−/e+ capture). </p>
+<p>Wraps interpolation logic for tabulated weak rates and provides both scalar and AD interfaces for rate and energy generation. The reactants/products are the parent/daughter nuclei of the weak process.</p>
+<p>the product nucleus is resolved from (A,Z) and channel via simple charge-changing rules (β−: Z+1; β+: Z−1; e− capture: Z−1; e+ capture: Z+1). The reaction ID is formatted like "Parent(channel)Product" with ν/ν̄ decorations, and an internal CppAD atomic (<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html" title="CppAD atomic that wraps weak-rate interpolation for AD evaluation.">AtomicWeakRate</a>) is prepared for AD energy calculations. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a222c0662bf5323037c9fdddfb929d4f7" name="a222c0662bf5323037c9fdddfb929d4f7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a222c0662bf5323037c9fdddfb929d4f7">&#9670;&#160;</a></span>WeakReaction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::rates::weak::WeakReaction::WeakReaction </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a></td>          <td class="paramname"><span class="paramname"><em>type</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">WeakRateInterpolator</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>interpolator</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel explicit">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct a <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html" title="Concrete Reaction representing a single weak process (beta±, e−/e+ capture).">WeakReaction</a> for a specific weak channel and parent species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>Parent nuclide undergoing the weak process. </td></tr>
+    <tr><td class="paramname">type</td><td>The weak reaction channel (beta−, beta+, e− capture, e+ capture). </td></tr>
+    <tr><td class="paramname">interpolator</td><td>Reference to a <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html" title="3D table interpolator for tabulated weak reaction data by isotope.">WeakRateInterpolator</a> providing tabulated data. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section pre"><dt>Precondition</dt><dd>The product nuclide must be resolvable for the given (species, type). </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>Object is ready to compute rates using the provided interpolator. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the product species cannot be resolved for the channel (product resolution uses the charge-changing rules described above). </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a6e567323ca019eadcbb9dbb814ebeb0b" name="a6e567323ca019eadcbb9dbb814ebeb0b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6e567323ca019eadcbb9dbb814ebeb0b">&#9670;&#160;</a></span>all_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_set&lt; fourdst::atomic::Species &gt; gridfire::rates::weak::WeakReaction::all_species </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set of both parent and daughter species. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa13cd9097229fcc99128d9286b8f17e6">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="af515e3587a1050c4bc59657696be5f9b" name="af515e3587a1050c4bc59657696be5f9b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af515e3587a1050c4bc59657696be5f9b">&#9670;&#160;</a></span>calculate_energy_generation_rate() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">CppAD::AD&lt; double &gt; gridfire::rates::weak::WeakReaction::calculate_energy_generation_rate </td>
+          <td>(</td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>index_to_species_map</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>AD-enabled net energy generation rate (MeV/s). </p>
+<p>Uses an internal CppAD atomic to compute two outputs at once: the rate λ and the neutrino loss ν_loss at (T9, log10(rho*Ye), μe). Returns λ · (Q − ν_loss). The atomic throws on interpolation failure.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the atomic rate evaluation fails to interpolate. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Reimplemented from <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a091d6d4aa59f788c97f9b5481f46f1b5" name="a091d6d4aa59f788c97f9b5481f46f1b5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a091d6d4aa59f788c97f9b5481f46f1b5">&#9670;&#160;</a></span>calculate_energy_generation_rate() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::calculate_energy_generation_rate </td>
+          <td>(</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>index_to_species_map</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Net energy generation rate (MeV/s) for this weak reaction. </p>
+<p>Interpolates once to obtain both the log10(rate) and the appropriate log10(neutrino-loss) for the channel, converts to linear values, computes E_deposited = Q − ν_loss, and returns λ · E_deposited. Throws on interpolation failure.</p>
+<p>Channel mapping for neutrino-loss column:</p><ul>
+<li>β− decay and e+ capture: use log_antineutrino_loss_bd</li>
+<li>β+ decay and e− capture: use log_neutrino_loss_ec</li>
+</ul>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g cm^-3. </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential (MeV). </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector (unused for weak channels). </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Index-to-species map (unused for weak channels). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Energy generation rate in MeV/s. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>On interpolation failure. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keywordtype">double</span> eps = rxn.calculate_energy_generation_rate(3.0, 1e7, 0.5, 2.0, {}, {});</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Reimplemented from <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="ac2d5366d4b5766413db34558dbce3cb3" name="ac2d5366d4b5766413db34558dbce3cb3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac2d5366d4b5766413db34558dbce3cb3">&#9670;&#160;</a></span>calculate_log_rate_partial_deriv_wrt_T9()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::calculate_log_rate_partial_deriv_wrt_T9 </td>
+          <td>(</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>composition</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logarithmic temperature sensitivity of the rate at the given state. </p>
+<p>Implementation status: requests derivative tables from the interpolator and throws on failure; otherwise the function is not yet implemented and does not return a value. Avoid calling until implemented.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g cm^-3. </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential (MeV). </td></tr>
+    <tr><td class="paramname">composition</td><td>Composition context (not used by weak channels presently). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>d ln λ / d ln T9. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>On interpolation failure. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa2b615e764bb005e526ca9327319c735">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a90ca346e2321516656b83d863416671e" name="a90ca346e2321516656b83d863416671e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a90ca346e2321516656b83d863416671e">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[1/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">CppAD::AD&lt; double &gt; gridfire::rates::weak::WeakReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>index_to_species_map</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>AD-enabled weak reaction rate λ(T9, rho, Ye, μe) in 1/s. </p>
+<p>Current implementation returns 0.0. AD support is provided for the energy-generation overload below using an internal CppAD atomic that evaluates both the rate and neutrino loss consistently. A future implementation may mirror that atomic here and return the AD rate.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK (AD type). </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density (g cm^-3, AD type). </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction (AD type). </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential (MeV, AD type). </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector (unused for weak channels). </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Index-to-species map (unused for weak channels). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> rate (1/s) as CppAD::AD&lt;double&gt; (currently 0.0). </dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">using </span>AD = CppAD::AD&lt;double&gt;;</div>
+<div class="line">AD lambda_ad = rxn.calculate_rate(AD(3.0), AD(1e7), AD(0.5), AD(2.0), {}, {});</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#af8303d67df61fc9e31ce054f0e8a3e14">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a05df0657efed55eb4262c7834d81400a" name="a05df0657efed55eb4262c7834d81400a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a05df0657efed55eb4262c7834d81400a">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[2/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>index_to_species_map</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Scalar weak reaction rate λ(T9, rho, Ye, μe) in 1/s. </p>
+<p>Performs a single interpolation of the weak-rate tables at (T9, log10(rho*Ye), μe). If the selected log10(rate) is ≤ sentinel (-60), returns 0; otherwise returns 10^{log10(rate)}. On interpolation failure, throws with a message including (A,Z) and the state point.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK (1e9 K). </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density (g cm^-3). </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential (MeV). </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector (unused for weak channels). </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Index-to-species map (unused for weak channels). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> rate (1/s). </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>On interpolation failure. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keywordtype">double</span> lambda = rxn.calculate_rate(2.0, 1e8, 0.4, 1.5, {}, {});</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a83c121480533593adfd68c4a67a649f1">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="aa28f151d4ce14e0d6fcbecb07d03cd28" name="aa28f151d4ce14e0d6fcbecb07d03cd28"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa28f151d4ce14e0d6fcbecb07d03cd28">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[3/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;IsArithmeticOrAD T&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">T gridfire::rates::weak::WeakReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">T</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; T &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>index_to_species_map</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Internal unified implementation for scalar/AD rate evaluation. </p>
+<dl class="tparams"><dt>Template Parameters</dt><dd>
+  <table class="tparams">
+    <tr><td class="paramname">T</td><td>double or CppAD::AD&lt;double&gt;. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9,rho,Ye,mue</td><td>Thermodynamic state. </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector (unused for weak channels). </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Index-to-species map (unused for weak channels). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> rate (1/s) as T. For double, performs table interpolation and returns 0 when the tabulated log10(rate) ≤ sentinel; for AD, calls the atomic and returns the first output. </dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>T9 &gt; 0, rho &gt; 0, 0 &lt; Ye &lt;= 1. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>No persistent state is modified. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If interpolation fails (double path) or the atomic fails (AD path). </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="ac10e1451d20876f6eab199e127f213c7" name="ac10e1451d20876f6eab199e127f213c7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac10e1451d20876f6eab199e127f213c7">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &gt; gridfire::rates::weak::WeakReaction::clone </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Polymorphic deep copy. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab95ce7fb022a9432bdc77f14679221ee">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a745b161968f37873b5d40fe6bf9d2118" name="a745b161968f37873b5d40fe6bf9d2118"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a745b161968f37873b5d40fe6bf9d2118">&#9670;&#160;</a></span>contains()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::contains </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Check if a species participates in this weak reaction. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a768db057d358240d4825c21869af0792">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a957b5bfe70e536290ef677a7c5b6643f" name="a957b5bfe70e536290ef677a7c5b6643f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a957b5bfe70e536290ef677a7c5b6643f">&#9670;&#160;</a></span>contains_product()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::contains_product </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Check if a species is the product (daughter). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a2708d2e8f42159df6605a5948b13c4c5">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a98095e6536d9a6434c5955f4c169d505" name="a98095e6536d9a6434c5955f4c169d505"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a98095e6536d9a6434c5955f4c169d505">&#9670;&#160;</a></span>contains_reactant()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::contains_reactant </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Check if a species is the reactant (parent). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab28bf4f9417ecabcc8350bae449fedd5">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a7f0d21c80fbbf94ead613e678d44b835" name="a7f0d21c80fbbf94ead613e678d44b835"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7f0d21c80fbbf94ead613e678d44b835">&#9670;&#160;</a></span>get_log_neutrino_loss_from_payload()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::get_log_neutrino_loss_from_payload </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">WeakRatePayload</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>payload</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Extract the channel-specific log10(neutrino loss) from a payload. Mapping: β−/e+ capture→log_antineutrino_loss_bd; β+/e− capture→log_neutrino_loss_ec. </p>
+
+</div>
+</div>
+<a id="a14555633289fc3822e927afca7401e49" name="a14555633289fc3822e927afca7401e49"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a14555633289fc3822e927afca7401e49">&#9670;&#160;</a></span>get_log_rate_from_payload()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::get_log_rate_from_payload </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">WeakRatePayload</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>payload</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Extract the channel-specific log10(rate) from an interpolated payload. Mapping: β−→log_beta_minus, β+→log_beta_plus, e− capture→log_electron_capture, e+ capture→log_positron_capture. </p>
+
+</div>
+</div>
+<a id="aefc75b3149bee2da878177279ad375da" name="aefc75b3149bee2da878177279ad375da"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aefc75b3149bee2da878177279ad375da">&#9670;&#160;</a></span>getWeakRateInterpolator()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">WeakRateInterpolator</a> &amp; gridfire::rates::weak::WeakReaction::getWeakRateInterpolator </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Access the underlying rate interpolator used by this reaction. </p>
+
+</div>
+</div>
+<a id="ad2ba6b584cb2df7c15633fca81ce6af1" name="ad2ba6b584cb2df7c15633fca81ce6af1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad2ba6b584cb2df7c15633fca81ce6af1">&#9670;&#160;</a></span>hash()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">uint64_t gridfire::rates::weak::WeakReaction::hash </td>
+          <td>(</td>
+          <td class="paramtype">uint64_t</td>          <td class="paramname"><span class="paramname"><em>seed</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Content-based 64-bit hash for this reaction. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7ba8c18cd5445aa3499a6fd351183f7a">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="ad01a15d95878c9edbf57cd9045c4413b" name="ad01a15d95878c9edbf57cd9045c4413b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad01a15d95878c9edbf57cd9045c4413b">&#9670;&#160;</a></span>id()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string_view gridfire::rates::weak::WeakReaction::id </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Unique identifier string for the weak channel. </p>
+<dl class="section return"><dt>Returns</dt><dd>A stable string view (e.g., "Fe52(e-,ν)Mn52"). </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a94b92308b9619ec20c690e55157786ba">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a90b62d922d91832859516450cf8e3876" name="a90b62d922d91832859516450cf8e3876"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a90b62d922d91832859516450cf8e3876">&#9670;&#160;</a></span>is_reverse()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::is_reverse </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Weak reactions are parameterized in the forward sense (never reverse). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a3906a668410e02239f9031b5fc580214">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a1210917ca1727ea474bb606cf8279edb" name="a1210917ca1727ea474bb606cf8279edb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1210917ca1727ea474bb606cf8279edb">&#9670;&#160;</a></span>num_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::rates::weak::WeakReaction::num_species </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of unique species involved (always 2 for weak reactions). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ae2a1b0395ac127c792a8049cd0bcc249">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a5c60feacb0ac48b35323d9f688315316" name="a5c60feacb0ac48b35323d9f688315316"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5c60feacb0ac48b35323d9f688315316">&#9670;&#160;</a></span>product_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_set&lt; fourdst::atomic::Species &gt; gridfire::rates::weak::WeakReaction::product_species </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Singleton set containing only the daughter species. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0d16572ae2b664374d32ee6c4e22123a">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="aed0ea28ed3ba96a9f86aa9db947ec01c" name="aed0ea28ed3ba96a9f86aa9db947ec01c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aed0ea28ed3ba96a9f86aa9db947ec01c">&#9670;&#160;</a></span>products()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::rates::weak::WeakReaction::products </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Products list (daughter nuclide only). </p>
+<dl class="section return"><dt>Returns</dt><dd>Vector with the daughter species. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a3d7451045d8df41ea98b5e419e0e5ab0">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="afedb724bf9f1c8fc91d853f2bedb10cb" name="afedb724bf9f1c8fc91d853f2bedb10cb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afedb724bf9f1c8fc91d853f2bedb10cb">&#9670;&#160;</a></span>qValue()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::qValue </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Q-value (MeV) based on nuclear mass differences and channel. </p>
+<p>Computes Q = (M_parent − M_daughter) c^2 converted to MeV. For β+ decay subtract 2 m_e c^2, for e+ capture add 2 m_e c^2; for β− and e− capture it is just the nuclear mass difference. Neutrino rest mass is ignored. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="aae06ff559026e3ce242a42cdd888c5a0" name="aae06ff559026e3ce242a42cdd888c5a0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aae06ff559026e3ce242a42cdd888c5a0">&#9670;&#160;</a></span>reactant_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_set&lt; fourdst::atomic::Species &gt; gridfire::rates::weak::WeakReaction::reactant_species </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Singleton set containing only the parent species. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a82c14096308cdc9126ab6d9667febcd2">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a1362d46630f30203027093e35883d1b1" name="a1362d46630f30203027093e35883d1b1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1362d46630f30203027093e35883d1b1">&#9670;&#160;</a></span>reactants()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::rates::weak::WeakReaction::reactants </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reactants list (parent nuclide only). </p>
+<dl class="section return"><dt>Returns</dt><dd>Vector with the parent species. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ac7b08c61cdc97268b9442afec4d08dad">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a8bf7dc26d9f1375625df99bceba08a44" name="a8bf7dc26d9f1375625df99bceba08a44"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8bf7dc26d9f1375625df99bceba08a44">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt; fourdst::atomic::Species, int &gt; gridfire::rates::weak::WeakReaction::stoichiometry </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Full stoichiometry map: parent -1, daughter +1. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ad49f4cad024db72c966d949c75f1ce4d">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a1f4acfdb39bb861aaee9f3f28cfc406e" name="a1f4acfdb39bb861aaee9f3f28cfc406e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1f4acfdb39bb861aaee9f3f28cfc406e">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::rates::weak::WeakReaction::stoichiometry </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Stoichiometric coefficient for a species: -1 (parent), +1 (daughter), 0 otherwise. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab7888b57507d6d27de6e5fcaea40fff5">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="aade329265a26bdc005c0793ba7a36ab2" name="aade329265a26bdc005c0793ba7a36ab2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aade329265a26bdc005c0793ba7a36ab2">&#9670;&#160;</a></span>type()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">reaction::ReactionType</a> gridfire::rates::weak::WeakReaction::type </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p><a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> type tag for runtime dispatch. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a4f2bf61b35566e439ac8a48da265d215" name="a4f2bf61b35566e439ac8a48da265d215"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4f2bf61b35566e439ac8a48da265d215">&#9670;&#160;</a></span>m_atomic</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html">AtomicWeakRate</a> gridfire::rates::weak::WeakReaction::m_atomic</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a2f0ee4c0d52db0f58781f90dd39dc0f7" name="a2f0ee4c0d52db0f58781f90dd39dc0f7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2f0ee4c0d52db0f58781f90dd39dc0f7">&#9670;&#160;</a></span>m_constants</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">constants</a> gridfire::rates::weak::WeakReaction::m_constants</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a79877bd387bd891e602adff3f99cb4c5" name="a79877bd387bd891e602adff3f99cb4c5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a79877bd387bd891e602adff3f99cb4c5">&#9670;&#160;</a></span>m_id</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::rates::weak::WeakReaction::m_id</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="adf203cbae7d7afcd274020b5210b426b" name="adf203cbae7d7afcd274020b5210b426b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adf203cbae7d7afcd274020b5210b426b">&#9670;&#160;</a></span>m_interpolator</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">WeakRateInterpolator</a>&amp; gridfire::rates::weak::WeakReaction::m_interpolator</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aee395d13ed3a515d5c1d69bedffca5de" name="aee395d13ed3a515d5c1d69bedffca5de"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aee395d13ed3a515d5c1d69bedffca5de">&#9670;&#160;</a></span>m_product</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::atomic::Species gridfire::rates::weak::WeakReaction::m_product</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a2567545c89eb847a15909b02fa0f383e" name="a2567545c89eb847a15909b02fa0f383e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2567545c89eb847a15909b02fa0f383e">&#9670;&#160;</a></span>m_product_a</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::rates::weak::WeakReaction::m_product_a</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab1be1d3010ff539b8a911506734fd9cf" name="ab1be1d3010ff539b8a911506734fd9cf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab1be1d3010ff539b8a911506734fd9cf">&#9670;&#160;</a></span>m_product_z</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::rates::weak::WeakReaction::m_product_z</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aeaceef054714e2a9667986406107ba3a" name="aeaceef054714e2a9667986406107ba3a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aeaceef054714e2a9667986406107ba3a">&#9670;&#160;</a></span>m_reactant</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::atomic::Species gridfire::rates::weak::WeakReaction::m_reactant</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a37dfb1d460e78e81a6def62e7217e6f8" name="a37dfb1d460e78e81a6def62e7217e6f8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a37dfb1d460e78e81a6def62e7217e6f8">&#9670;&#160;</a></span>m_reactant_a</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::rates::weak::WeakReaction::m_reactant_a</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a3d1b52076e102d07acb7200a7ee99165" name="a3d1b52076e102d07acb7200a7ee99165"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3d1b52076e102d07acb7200a7ee99165">&#9670;&#160;</a></span>m_reactant_z</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::rates::weak::WeakReaction::m_reactant_z</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a92c3590161c63c6ed4e7650d2b7beee3" name="a92c3590161c63c6ed4e7650d2b7beee3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a92c3590161c63c6ed4e7650d2b7beee3">&#9670;&#160;</a></span>m_type</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a> gridfire::rates::weak::WeakReaction::m_type</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak_8h.html">weak.h</a></li>
+<li>src/lib/reaction/weak/<a class="el" href="weak_8cpp.html">weak.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates.html">rates</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">weak</a></li><li class="navelem"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">WeakReaction</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.js b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.js
new file mode 100644
index 00000000..020c8097
--- /dev/null
+++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.js
@@ -0,0 +1,43 @@
+var classgridfire_1_1rates_1_1weak_1_1_weak_reaction =
+[
+    [ "AtomicWeakRate", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate" ],
+    [ "constants", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants" ],
+    [ "WeakReaction", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a222c0662bf5323037c9fdddfb929d4f7", null ],
+    [ "all_species", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a6e567323ca019eadcbb9dbb814ebeb0b", null ],
+    [ "calculate_energy_generation_rate", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#af515e3587a1050c4bc59657696be5f9b", null ],
+    [ "calculate_energy_generation_rate", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a091d6d4aa59f788c97f9b5481f46f1b5", null ],
+    [ "calculate_log_rate_partial_deriv_wrt_T9", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac2d5366d4b5766413db34558dbce3cb3", null ],
+    [ "calculate_rate", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90ca346e2321516656b83d863416671e", null ],
+    [ "calculate_rate", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a05df0657efed55eb4262c7834d81400a", null ],
+    [ "calculate_rate", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aa28f151d4ce14e0d6fcbecb07d03cd28", null ],
+    [ "clone", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac10e1451d20876f6eab199e127f213c7", null ],
+    [ "contains", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a745b161968f37873b5d40fe6bf9d2118", null ],
+    [ "contains_product", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a957b5bfe70e536290ef677a7c5b6643f", null ],
+    [ "contains_reactant", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a98095e6536d9a6434c5955f4c169d505", null ],
+    [ "get_log_neutrino_loss_from_payload", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a7f0d21c80fbbf94ead613e678d44b835", null ],
+    [ "get_log_rate_from_payload", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a14555633289fc3822e927afca7401e49", null ],
+    [ "getWeakRateInterpolator", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aefc75b3149bee2da878177279ad375da", null ],
+    [ "hash", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad2ba6b584cb2df7c15633fca81ce6af1", null ],
+    [ "id", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad01a15d95878c9edbf57cd9045c4413b", null ],
+    [ "is_reverse", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90b62d922d91832859516450cf8e3876", null ],
+    [ "num_species", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1210917ca1727ea474bb606cf8279edb", null ],
+    [ "product_species", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a5c60feacb0ac48b35323d9f688315316", null ],
+    [ "products", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aed0ea28ed3ba96a9f86aa9db947ec01c", null ],
+    [ "qValue", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#afedb724bf9f1c8fc91d853f2bedb10cb", null ],
+    [ "reactant_species", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aae06ff559026e3ce242a42cdd888c5a0", null ],
+    [ "reactants", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1362d46630f30203027093e35883d1b1", null ],
+    [ "stoichiometry", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a8bf7dc26d9f1375625df99bceba08a44", null ],
+    [ "stoichiometry", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1f4acfdb39bb861aaee9f3f28cfc406e", null ],
+    [ "type", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aade329265a26bdc005c0793ba7a36ab2", null ],
+    [ "m_atomic", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a4f2bf61b35566e439ac8a48da265d215", null ],
+    [ "m_constants", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2f0ee4c0d52db0f58781f90dd39dc0f7", null ],
+    [ "m_id", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a79877bd387bd891e602adff3f99cb4c5", null ],
+    [ "m_interpolator", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#adf203cbae7d7afcd274020b5210b426b", null ],
+    [ "m_product", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aee395d13ed3a515d5c1d69bedffca5de", null ],
+    [ "m_product_a", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2567545c89eb847a15909b02fa0f383e", null ],
+    [ "m_product_z", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ab1be1d3010ff539b8a911506734fd9cf", null ],
+    [ "m_reactant", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aeaceef054714e2a9667986406107ba3a", null ],
+    [ "m_reactant_a", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a37dfb1d460e78e81a6def62e7217e6f8", null ],
+    [ "m_reactant_z", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a3d1b52076e102d07acb7200a7ee99165", null ],
+    [ "m_type", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a92c3590161c63c6ed4e7650d2b7beee3", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.png b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.png
new file mode 100644
index 0000000000000000000000000000000000000000..b5d2372a7a25e057864ca637eb514b02a140fff9
GIT binary patch
literal 799
zcmeAS@N?(olHy`uVBq!ia0vp^7l1f`gBeK1pW>beq@)9ULR|m<{|{uoc=NTi|Il&^
z1I+@7>1SR%c<=xyZhAIs2~du+B*-tA0mugfbEer>7#NsVdAc};R4~4s`+Cx91%Z~?
z+qAB}|9?b1u0isEOYrV$4%btCT*il<$NcF|jhr^IrB&tlMHZ!#^Gq8(Hl^QX;`%A#
zv`6`*cGax;6)j)gC+W`JJuzjizfws#?{_ngO&83H&1%b+es^%!x%OXV*4y4=7ys(z
zEA-#E{A>Gf`MR6xjCYHbPe$c8Zfk$1;GSXBv%4=m@5uZ!z6x(IZc9(Fdvi&pa*?(}
z*uN(sw|9T}V!hdJV_V)XpbhgGicE9ezg@0gaQ=?RrfdAJE4F>t%WvHCP~ZK;Gv`R>
z^+E4K4d*c4EdZKszH8232FnQ{j7L3k0u3j|>{e>FT&4H@Qm@MSl9$$B4u-d@{O{Jg
zF5p?$yl%-I^N%s!mXrR7`6^6$6Di!GQhiN0BXU}*0^@=CFBln=Gffs8Pc~R|v0<J~
zvLG+J$!-~jFKanj7;Lkd7#+^fa$vZySxtc9%Nk;YY8DANNqBNhGU-#Bpz?JMr;4ZT
zYR(d#waWz_%~jc2`g&@_<J`t;%-<T<W_kvBpYMEjXEn#%pB_cW*E8;|`th=Y$tr2%
zzvUNl@-_P2mH%ukRQaD9_ciTu%$|Hk(;lG-vroT%y0Ub+>V>qDoR=0tps@YgA@XUW
zdA7kDpQm?>v~;4qZ>|+{IIHgM7-#oHHDKa~XOhp>-ZY3V%NNOBF~d6YJF`Og;>?pX
zLN)h^2F$u$yp;EfftI-6>c1irmef?-wkoRJT*r9dG&e2O&Ftx)b9ziSe@rvI;<IzI
zRMym*+eetUay?1nHEk%GzFA&@{n4!ushie4Z;NvGXUwr$!fa)@YFA9usuxAP3wFzk
zc)kh<<@LN|etOv*4ja3tDlc!FHma;l_f_zG73seK7)~Dl8CX<T8~xe8JPDYT89ZJ6
KT-G@yGywpBLu;V`

literal 0
HcmV?d00001

diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate-members.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate-members.html
new file mode 100644
index 00000000..fe5af8fe
--- /dev/null
+++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate-members.html
@@ -0,0 +1,126 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReaction::AtomicWeakRate Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a46d76ca50ee00198a9f4a873c6ceb874">AtomicWeakRate</a>(const WeakRateInterpolator &amp;interpolator, const size_t a, const size_t z, const WeakReactionType type)</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a976a2ef2e58439429c1a6e94c27f4662">for_sparse_jac</a>(size_t q, const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;r, CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;s) override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ab4f12e8da29d4d158fb0adf2db31b4bb">forward</a>(size_t p, size_t q, const CppAD::vector&lt; bool &gt; &amp;vx, CppAD::vector&lt; bool &gt; &amp;vy, const CppAD::vector&lt; double &gt; &amp;tx, CppAD::vector&lt; double &gt; &amp;ty) override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a0beb567afdecd85e336b493ff85326bd">m_a</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a874efa5a57427c8afecd0375094da6e9">m_interpolator</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae78d2a9b20c22a6ad624f4d968cbf639">m_type</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a292dfe5fdfd3b90a36906f5f609a4c1c">m_z</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae9d61bdda761da89733408c232d7220e">rev_sparse_jac</a>(size_t q, const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;rt, CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;st) override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#aad13654ea15547c2c95035c3b7937d58">reverse</a>(size_t q, const CppAD::vector&lt; double &gt; &amp;tx, const CppAD::vector&lt; double &gt; &amp;ty, CppAD::vector&lt; double &gt; &amp;px, const CppAD::vector&lt; double &gt; &amp;py) override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html
new file mode 100644
index 00000000..603b1a28
--- /dev/null
+++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html
@@ -0,0 +1,475 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::rates::weak::WeakReaction::AtomicWeakRate Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReaction::AtomicWeakRate Class Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>CppAD atomic that wraps weak-rate interpolation for AD evaluation.  
+ <a href="#details">More...</a></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::rates::weak::WeakReaction::AtomicWeakRate:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.png" alt=""/>
+ </div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a46d76ca50ee00198a9f4a873c6ceb874" id="r_a46d76ca50ee00198a9f4a873c6ceb874"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a46d76ca50ee00198a9f4a873c6ceb874">AtomicWeakRate</a> (const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">WeakRateInterpolator</a> &amp;interpolator, const size_t a, const size_t z, const <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a> <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aade329265a26bdc005c0793ba7a36ab2">type</a>)</td></tr>
+<tr class="memdesc:a46d76ca50ee00198a9f4a873c6ceb874"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct the atomic operation for a specific (A,Z) and channel.  <br /></td></tr>
+<tr class="separator:a46d76ca50ee00198a9f4a873c6ceb874"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab4f12e8da29d4d158fb0adf2db31b4bb" id="r_ab4f12e8da29d4d158fb0adf2db31b4bb"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab4f12e8da29d4d158fb0adf2db31b4bb">forward</a> (size_t p, size_t q, const CppAD::vector&lt; bool &gt; &amp;vx, CppAD::vector&lt; bool &gt; &amp;vy, const CppAD::vector&lt; double &gt; &amp;tx, CppAD::vector&lt; double &gt; &amp;ty) override</td></tr>
+<tr class="memdesc:ab4f12e8da29d4d158fb0adf2db31b4bb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Forward pass: compute rate and neutrino-loss values for AD. On failure to interpolate, throws a std::runtime_error with details; sets output sparsity such that both outputs depend on all inputs when any input is variable.  <br /></td></tr>
+<tr class="separator:ab4f12e8da29d4d158fb0adf2db31b4bb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aad13654ea15547c2c95035c3b7937d58" id="r_aad13654ea15547c2c95035c3b7937d58"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aad13654ea15547c2c95035c3b7937d58">reverse</a> (size_t q, const CppAD::vector&lt; double &gt; &amp;tx, const CppAD::vector&lt; double &gt; &amp;ty, CppAD::vector&lt; double &gt; &amp;px, const CppAD::vector&lt; double &gt; &amp;py) override</td></tr>
+<tr class="memdesc:aad13654ea15547c2c95035c3b7937d58"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reverse pass: propagate adjoints using tabulated derivatives. Uses d log10 columns, converting to linear-scale derivatives via ln(10) scaling and chain rule with the forward-pass outputs.  <br /></td></tr>
+<tr class="separator:aad13654ea15547c2c95035c3b7937d58"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a976a2ef2e58439429c1a6e94c27f4662" id="r_a976a2ef2e58439429c1a6e94c27f4662"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a976a2ef2e58439429c1a6e94c27f4662">for_sparse_jac</a> (size_t q, const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;r, CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;s) override</td></tr>
+<tr class="memdesc:a976a2ef2e58439429c1a6e94c27f4662"><td class="mdescLeft">&#160;</td><td class="mdescRight">Forward-mode sparsity for Jacobian.  <br /></td></tr>
+<tr class="separator:a976a2ef2e58439429c1a6e94c27f4662"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae9d61bdda761da89733408c232d7220e" id="r_ae9d61bdda761da89733408c232d7220e"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae9d61bdda761da89733408c232d7220e">rev_sparse_jac</a> (size_t q, const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;rt, CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;st) override</td></tr>
+<tr class="memdesc:ae9d61bdda761da89733408c232d7220e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reverse-mode sparsity for Jacobian.  <br /></td></tr>
+<tr class="separator:ae9d61bdda761da89733408c232d7220e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a874efa5a57427c8afecd0375094da6e9" id="r_a874efa5a57427c8afecd0375094da6e9"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">WeakRateInterpolator</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a874efa5a57427c8afecd0375094da6e9">m_interpolator</a></td></tr>
+<tr class="separator:a874efa5a57427c8afecd0375094da6e9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0beb567afdecd85e336b493ff85326bd" id="r_a0beb567afdecd85e336b493ff85326bd"><td class="memItemLeft" align="right" valign="top">const size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0beb567afdecd85e336b493ff85326bd">m_a</a></td></tr>
+<tr class="separator:a0beb567afdecd85e336b493ff85326bd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a292dfe5fdfd3b90a36906f5f609a4c1c" id="r_a292dfe5fdfd3b90a36906f5f609a4c1c"><td class="memItemLeft" align="right" valign="top">const size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a292dfe5fdfd3b90a36906f5f609a4c1c">m_z</a></td></tr>
+<tr class="separator:a292dfe5fdfd3b90a36906f5f609a4c1c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae78d2a9b20c22a6ad624f4d968cbf639" id="r_ae78d2a9b20c22a6ad624f4d968cbf639"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae78d2a9b20c22a6ad624f4d968cbf639">m_type</a></td></tr>
+<tr class="separator:ae78d2a9b20c22a6ad624f4d968cbf639"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>CppAD atomic that wraps weak-rate interpolation for AD evaluation. </p>
+<p>Forward pass computes two outputs (λ, ν_loss) by interpolating the tables at the provided state; reverse pass uses derivative tables to backpropagate adjoints for all three inputs (T9, log10(rho*Ye), μe). Sparsity routines declare full dependence of both outputs on all inputs. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a46d76ca50ee00198a9f4a873c6ceb874" name="a46d76ca50ee00198a9f4a873c6ceb874"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a46d76ca50ee00198a9f4a873c6ceb874">&#9670;&#160;</a></span>AtomicWeakRate()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::rates::weak::WeakReaction::AtomicWeakRate::AtomicWeakRate </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">WeakRateInterpolator</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>interpolator</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const size_t</td>          <td class="paramname"><span class="paramname"><em>a</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const size_t</td>          <td class="paramname"><span class="paramname"><em>z</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a></td>          <td class="paramname"><span class="paramname"><em>type</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct the atomic operation for a specific (A,Z) and channel. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">interpolator</td><td>Rate source. </td></tr>
+    <tr><td class="paramname">a</td><td>Mass number A of the parent. </td></tr>
+    <tr><td class="paramname">z</td><td>Proton number Z of the parent. </td></tr>
+    <tr><td class="paramname">type</td><td>Weak channel. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a976a2ef2e58439429c1a6e94c27f4662" name="a976a2ef2e58439429c1a6e94c27f4662"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a976a2ef2e58439429c1a6e94c27f4662">&#9670;&#160;</a></span>for_sparse_jac()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::AtomicWeakRate::for_sparse_jac </td>
+          <td>(</td>
+          <td class="paramtype">size_t</td>          <td class="paramname"><span class="paramname"><em>q</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>r</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>s</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Forward-mode sparsity for Jacobian. </p>
+
+</div>
+</div>
+<a id="ab4f12e8da29d4d158fb0adf2db31b4bb" name="ab4f12e8da29d4d158fb0adf2db31b4bb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab4f12e8da29d4d158fb0adf2db31b4bb">&#9670;&#160;</a></span>forward()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::AtomicWeakRate::forward </td>
+          <td>(</td>
+          <td class="paramtype">size_t</td>          <td class="paramname"><span class="paramname"><em>p</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t</td>          <td class="paramname"><span class="paramname"><em>q</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; bool &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>vx</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::vector&lt; bool &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>vy</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>tx</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>ty</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Forward pass: compute rate and neutrino-loss values for AD. On failure to interpolate, throws a std::runtime_error with details; sets output sparsity such that both outputs depend on all inputs when any input is variable. </p>
+
+</div>
+</div>
+<a id="ae9d61bdda761da89733408c232d7220e" name="ae9d61bdda761da89733408c232d7220e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae9d61bdda761da89733408c232d7220e">&#9670;&#160;</a></span>rev_sparse_jac()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::AtomicWeakRate::rev_sparse_jac </td>
+          <td>(</td>
+          <td class="paramtype">size_t</td>          <td class="paramname"><span class="paramname"><em>q</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>rt</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>st</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reverse-mode sparsity for Jacobian. </p>
+
+</div>
+</div>
+<a id="aad13654ea15547c2c95035c3b7937d58" name="aad13654ea15547c2c95035c3b7937d58"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aad13654ea15547c2c95035c3b7937d58">&#9670;&#160;</a></span>reverse()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::AtomicWeakRate::reverse </td>
+          <td>(</td>
+          <td class="paramtype">size_t</td>          <td class="paramname"><span class="paramname"><em>q</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>tx</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>ty</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>px</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>py</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reverse pass: propagate adjoints using tabulated derivatives. Uses d log10 columns, converting to linear-scale derivatives via ln(10) scaling and chain rule with the forward-pass outputs. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a0beb567afdecd85e336b493ff85326bd" name="a0beb567afdecd85e336b493ff85326bd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0beb567afdecd85e336b493ff85326bd">&#9670;&#160;</a></span>m_a</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const size_t gridfire::rates::weak::WeakReaction::AtomicWeakRate::m_a</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a874efa5a57427c8afecd0375094da6e9" name="a874efa5a57427c8afecd0375094da6e9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a874efa5a57427c8afecd0375094da6e9">&#9670;&#160;</a></span>m_interpolator</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">WeakRateInterpolator</a>&amp; gridfire::rates::weak::WeakReaction::AtomicWeakRate::m_interpolator</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae78d2a9b20c22a6ad624f4d968cbf639" name="ae78d2a9b20c22a6ad624f4d968cbf639"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae78d2a9b20c22a6ad624f4d968cbf639">&#9670;&#160;</a></span>m_type</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a> gridfire::rates::weak::WeakReaction::AtomicWeakRate::m_type</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a292dfe5fdfd3b90a36906f5f609a4c1c" name="a292dfe5fdfd3b90a36906f5f609a4c1c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a292dfe5fdfd3b90a36906f5f609a4c1c">&#9670;&#160;</a></span>m_z</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const size_t gridfire::rates::weak::WeakReaction::AtomicWeakRate::m_z</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak_8h.html">weak.h</a></li>
+<li>src/lib/reaction/weak/<a class="el" href="weak_8cpp.html">weak.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates.html">rates</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">weak</a></li><li class="navelem"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">WeakReaction</a></li><li class="navelem"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html">AtomicWeakRate</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.js b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.js
new file mode 100644
index 00000000..ecb0e7b8
--- /dev/null
+++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.js
@@ -0,0 +1,12 @@
+var classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate =
+[
+    [ "AtomicWeakRate", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a46d76ca50ee00198a9f4a873c6ceb874", null ],
+    [ "for_sparse_jac", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a976a2ef2e58439429c1a6e94c27f4662", null ],
+    [ "forward", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ab4f12e8da29d4d158fb0adf2db31b4bb", null ],
+    [ "rev_sparse_jac", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae9d61bdda761da89733408c232d7220e", null ],
+    [ "reverse", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#aad13654ea15547c2c95035c3b7937d58", null ],
+    [ "m_a", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a0beb567afdecd85e336b493ff85326bd", null ],
+    [ "m_interpolator", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a874efa5a57427c8afecd0375094da6e9", null ],
+    [ "m_type", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae78d2a9b20c22a6ad624f4d968cbf639", null ],
+    [ "m_z", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a292dfe5fdfd3b90a36906f5f609a4c1c", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.png b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.png
new file mode 100644
index 0000000000000000000000000000000000000000..675141da30a113d08d07d806fb92afa7a3afe0b6
GIT binary patch
literal 1043
zcmeAS@N?(olHy`uVBq!ia0y~yU^D@;12~w0<O1KyP#`58;1lBd|Nnm=^TnI5rTvGN
zTNr2-NK8NT;=zLlKylNvVM~B=oFzei!3;n?7??B7zQVx3JkQg`F{Fa=?cCdwUTg8V
zMC)Jv`#*k<a6AL!w*|KIVpkT2Or6S|z@p8x_s|&~L*r<6w@I9y>n2_DF!JzHKB=JD
ztJ1v0WD?J(jxFVmiYMpoEnID`@^XfafeGuhvafH}FF7K7X`AFSp{(=qoIm-!wT1Vn
z?A<Rf9~ZUxm+t#lx9xKN7n%L!Jn#1XaC+6}H;$2KzHm<ZQ!O`jTmHWv1rx6A*_D6$
zUrez1!zUjfZ8&q0Cp&7F<@}4^bC&IN<-2r8Sy<A2^8B50o2|~zv-`VYb^phHg_H9?
z%)ZpeWMDbZG4r`gY1sC!@0XOezIcAC&OfSJ>-plarC-zc-2dgY%y#9Qo3CEJH`#yo
zrkMVczkmF0cb{>;pZWF2j#rUO=N^B2=Rn!p?N>M7y&L+~#-=9T);sj)i&r=2Uv3Zg
zm?VG9-RpMI=a*j;PPU)$0S1FVFf9JF!U6*xI{KMuX`M4~8ZmrWSi|VR#PE8F2}8%n
zuT!rvD7bhrH%REGXYw*A0R=fGpJGt(017E+@-j4m1SVagk-!OdZ)0QcGiR<fdIl+Z
zu3lo|$u;Scil&Fx<RuE4zLT1Kmdg6R=imH!y2@G3%zXBI#x&tKywM9MEs<Q`_j<?i
z&y$|4^xb%)?n>;kyX#)Zd+eV5NAJZ)_xtO##eRF;ni%~4`=q4VZ#S3ze=4@^`}FN^
zR~7~?egDTc`bSDY<c`;?KW1I8UfR4RE%tZP-JFFt-ik$MM!(+p_VH7uP}b?Xldgux
zhAdw7R#I*r?<==+PNv>pi+}!${UnfUTQ+&x+AS}6CY^jNylwh5*>`$Tv%6K-?ml^X
z!RNS_zw{pYtzZ4|e2&;Yp=u7%sn6aWGx}P|<UNn?lGputPl_`qJJvoBdTX5-`fb*h
z**6}GJ)UW{*CV#eRQ%dT4fzA%kH4w#G~ZHw6kevi_Rf><m#!s$kDhZUv-HaL<DVb-
z&5r#X{_u9|dA&79t#vildM{ggWAo$4)#*E5SZD70Gj-bDqODhp|J||Np__Kr>sfQ#
zt1#|G>*q}}UBArcN7s!rVjXX{y;#D_9xzGB^OfW~6HhOdm$SZAEHn0uIw0#0;?0|)
y=IIzTONG@lbCQV4QqQ0X(@l&wA32jV(>~xxiNdXSCEdX6%i!ti=d#Wzp$P!8^z_vL

literal 0
HcmV?d00001

diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map-members.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map-members.html
new file mode 100644
index 00000000..6b6f398d
--- /dev/null
+++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map-members.html
@@ -0,0 +1,123 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReactionMap Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html">gridfire::rates::weak::WeakReactionMap</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a9ab9f6f64455eb46172ebda5e8cc3ec5">get_all_reactions</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html">gridfire::rates::weak::WeakReactionMap</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a290da6766a6d3094a5aae8b7cbcd0d70">get_species_reactions</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html">gridfire::rates::weak::WeakReactionMap</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#ad7345da84824495fb21c969c1a9c80f5">get_species_reactions</a>(const std::string &amp;species_name) const</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html">gridfire::rates::weak::WeakReactionMap</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a8169adef9b4b3c7552c7a8fdc945cf6f">m_weak_network</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html">gridfire::rates::weak::WeakReactionMap</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#aecc8c1b92d63da87827879ad5330c11e">WeakReactionMap</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html">gridfire::rates::weak::WeakReactionMap</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a73cc5a9d4a236091bbb40f22ed66b2f1">~WeakReactionMap</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html">gridfire::rates::weak::WeakReactionMap</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html
new file mode 100644
index 00000000..4cd604b5
--- /dev/null
+++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html
@@ -0,0 +1,342 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::rates::weak::WeakReactionMap Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReactionMap Class Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Index of available weak reactions keyed by species.  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;weak.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:aecc8c1b92d63da87827879ad5330c11e" id="r_aecc8c1b92d63da87827879ad5330c11e"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aecc8c1b92d63da87827879ad5330c11e">WeakReactionMap</a> ()</td></tr>
+<tr class="memdesc:aecc8c1b92d63da87827879ad5330c11e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct the map by loading all weak reaction entries.  <br /></td></tr>
+<tr class="separator:aecc8c1b92d63da87827879ad5330c11e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a73cc5a9d4a236091bbb40f22ed66b2f1" id="r_a73cc5a9d4a236091bbb40f22ed66b2f1"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a73cc5a9d4a236091bbb40f22ed66b2f1">~WeakReactionMap</a> ()=default</td></tr>
+<tr class="separator:a73cc5a9d4a236091bbb40f22ed66b2f1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9ab9f6f64455eb46172ebda5e8cc3ec5" id="r_a9ab9f6f64455eb46172ebda5e8cc3ec5"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9ab9f6f64455eb46172ebda5e8cc3ec5">get_all_reactions</a> () const</td></tr>
+<tr class="memdesc:a9ab9f6f64455eb46172ebda5e8cc3ec5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Return a flat list of all weak reaction entries.  <br /></td></tr>
+<tr class="separator:a9ab9f6f64455eb46172ebda5e8cc3ec5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a290da6766a6d3094a5aae8b7cbcd0d70" id="r_a290da6766a6d3094a5aae8b7cbcd0d70"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::vector&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a> &gt;, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550">WeakMapError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a290da6766a6d3094a5aae8b7cbcd0d70">get_species_reactions</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
+<tr class="memdesc:a290da6766a6d3094a5aae8b7cbcd0d70"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get all weak reaction entries for a given species.  <br /></td></tr>
+<tr class="separator:a290da6766a6d3094a5aae8b7cbcd0d70"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad7345da84824495fb21c969c1a9c80f5" id="r_ad7345da84824495fb21c969c1a9c80f5"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::vector&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a> &gt;, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550">WeakMapError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad7345da84824495fb21c969c1a9c80f5">get_species_reactions</a> (const std::string &amp;species_name) const</td></tr>
+<tr class="memdesc:ad7345da84824495fb21c969c1a9c80f5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get all weak reaction entries for a given species by name.  <br /></td></tr>
+<tr class="separator:ad7345da84824495fb21c969c1a9c80f5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a8169adef9b4b3c7552c7a8fdc945cf6f" id="r_a8169adef9b4b3c7552c7a8fdc945cf6f"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, std::vector&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8169adef9b4b3c7552c7a8fdc945cf6f">m_weak_network</a></td></tr>
+<tr class="separator:a8169adef9b4b3c7552c7a8fdc945cf6f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Index of available weak reactions keyed by species. </p>
+<p>Builds an in-memory map from the compiled weak-rate tables and provides simple query helpers to retrieve all weak reactions or those that involve a particular nuclide.</p>
+<p>Implementation summary: the constructor iterates over UNIFIED_WEAK_DATA and inserts entries keyed by the parent Species. For each channel (β−, β+, e−-capture, e+-capture), if the tabulated log10(rate) is above the sentinel (-60), a <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html" title="A single weak-reaction data point (type, state, and log values).">WeakReactionEntry</a> is pushed containing the grids t9, log10(rho*Ye), mu_e, the log10(rate), and the corresponding log10(neutrino loss) column. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="aecc8c1b92d63da87827879ad5330c11e" name="aecc8c1b92d63da87827879ad5330c11e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aecc8c1b92d63da87827879ad5330c11e">&#9670;&#160;</a></span>WeakReactionMap()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::rates::weak::WeakReactionMap::WeakReactionMap </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Construct the map by loading all weak reaction entries. </p>
+<dl class="section post"><dt>Postcondition</dt><dd>All valid reactions from the compiled data are available via <a class="el" href="#a9ab9f6f64455eb46172ebda5e8cc3ec5" title="Return a flat list of all weak reaction entries.">get_all_reactions()</a> and <a class="el" href="#a290da6766a6d3094a5aae8b7cbcd0d70" title="Get all weak reaction entries for a given species.">get_species_reactions()</a>. Implementation: iterates UNIFIED_WEAK_DATA, filters any log(rate) &lt;= -60, and groups entries by parent Species. </dd></dl>
+
+</div>
+</div>
+<a id="a73cc5a9d4a236091bbb40f22ed66b2f1" name="a73cc5a9d4a236091bbb40f22ed66b2f1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a73cc5a9d4a236091bbb40f22ed66b2f1">&#9670;&#160;</a></span>~WeakReactionMap()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::rates::weak::WeakReactionMap::~WeakReactionMap </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel default">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a9ab9f6f64455eb46172ebda5e8cc3ec5" name="a9ab9f6f64455eb46172ebda5e8cc3ec5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9ab9f6f64455eb46172ebda5e8cc3ec5">&#9670;&#160;</a></span>get_all_reactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a> &gt; gridfire::rates::weak::WeakReactionMap::get_all_reactions </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Return a flat list of all weak reaction entries. </p>
+<dl class="section return"><dt>Returns</dt><dd>Vector of <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html" title="A single weak-reaction data point (type, state, and log values).">WeakReactionEntry</a> records. </dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><a class="code hl_function" href="#aecc8c1b92d63da87827879ad5330c11e">WeakReactionMap</a> map;</div>
+<div class="line"><span class="keyword">auto</span> all = map.<a class="code hl_function" href="#a9ab9f6f64455eb46172ebda5e8cc3ec5">get_all_reactions</a>();</div>
+<div class="line"><span class="comment">// iterate or group as needed</span></div>
+<div class="ttc" id="aclassgridfire_1_1rates_1_1weak_1_1_weak_reaction_map_html_a9ab9f6f64455eb46172ebda5e8cc3ec5"><div class="ttname"><a href="#a9ab9f6f64455eb46172ebda5e8cc3ec5">gridfire::rates::weak::WeakReactionMap::get_all_reactions</a></div><div class="ttdeci">std::vector&lt; WeakReactionEntry &gt; get_all_reactions() const</div><div class="ttdoc">Return a flat list of all weak reaction entries.</div><div class="ttdef"><b>Definition</b> weak.cpp:133</div></div>
+<div class="ttc" id="aclassgridfire_1_1rates_1_1weak_1_1_weak_reaction_map_html_aecc8c1b92d63da87827879ad5330c11e"><div class="ttname"><a href="#aecc8c1b92d63da87827879ad5330c11e">gridfire::rates::weak::WeakReactionMap::WeakReactionMap</a></div><div class="ttdeci">WeakReactionMap()</div><div class="ttdoc">Construct the map by loading all weak reaction entries.</div><div class="ttdef"><b>Definition</b> weak.cpp:74</div></div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<a id="a290da6766a6d3094a5aae8b7cbcd0d70" name="a290da6766a6d3094a5aae8b7cbcd0d70"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a290da6766a6d3094a5aae8b7cbcd0d70">&#9670;&#160;</a></span>get_species_reactions() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; std::vector&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a> &gt;, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550">WeakMapError</a> &gt; gridfire::rates::weak::WeakReactionMap::get_species_reactions </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get all weak reaction entries for a given species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>Nuclide to query (A,Z). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>expected&lt;vector&lt;WeakReactionEntry&gt;, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550" title="Lookup errors for WeakReactionMap queries.">WeakMapError</a>&gt; containing reactions on success or SPECIES_NOT_FOUND on failure. </dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">using </span>fourdst::atomic::Species;</div>
+<div class="line"><a class="code hl_function" href="#aecc8c1b92d63da87827879ad5330c11e">WeakReactionMap</a> map;</div>
+<div class="line">Species fe52 = fourdst::atomic::az_to_species(52, 26);</div>
+<div class="line"><span class="keywordflow">if</span> (<span class="keyword">auto</span> res = map.<a class="code hl_function" href="#a290da6766a6d3094a5aae8b7cbcd0d70">get_species_reactions</a>(fe52); res) {</div>
+<div class="line">    <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>&amp; e : *res) { } <span class="comment">// use e</span></div>
+<div class="line">} <span class="keywordflow">else</span> {</div>
+<div class="line">    <span class="comment">// handle WeakMapError::SPECIES_NOT_FOUND</span></div>
+<div class="line">}</div>
+<div class="ttc" id="aclassgridfire_1_1rates_1_1weak_1_1_weak_reaction_map_html_a290da6766a6d3094a5aae8b7cbcd0d70"><div class="ttname"><a href="#a290da6766a6d3094a5aae8b7cbcd0d70">gridfire::rates::weak::WeakReactionMap::get_species_reactions</a></div><div class="ttdeci">std::expected&lt; std::vector&lt; WeakReactionEntry &gt;, WeakMapError &gt; get_species_reactions(const fourdst::atomic::Species &amp;species) const</div><div class="ttdoc">Get all weak reaction entries for a given species.</div><div class="ttdef"><b>Definition</b> weak.cpp:141</div></div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<a id="ad7345da84824495fb21c969c1a9c80f5" name="ad7345da84824495fb21c969c1a9c80f5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad7345da84824495fb21c969c1a9c80f5">&#9670;&#160;</a></span>get_species_reactions() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; std::vector&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a> &gt;, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550">WeakMapError</a> &gt; gridfire::rates::weak::WeakReactionMap::get_species_reactions </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;</td>          <td class="paramname"><span class="paramname"><em>species_name</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get all weak reaction entries for a given species by name. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species_name</td><td>Symbolic name (e.g., "Fe52"). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>expected&lt;vector&lt;WeakReactionEntry&gt;, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550" title="Lookup errors for WeakReactionMap queries.">WeakMapError</a>&gt; containing reactions on success or SPECIES_NOT_FOUND on failure. </dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><a class="code hl_function" href="#aecc8c1b92d63da87827879ad5330c11e">WeakReactionMap</a> map;</div>
+<div class="line"><span class="keywordflow">if</span> (<span class="keyword">auto</span> res = map.<a class="code hl_function" href="#a290da6766a6d3094a5aae8b7cbcd0d70">get_species_reactions</a>(<span class="stringliteral">&quot;Fe52&quot;</span>); res) {</div>
+<div class="line">    <span class="comment">// use *res</span></div>
+<div class="line">}</div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a8169adef9b4b3c7552c7a8fdc945cf6f" name="a8169adef9b4b3c7552c7a8fdc945cf6f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8169adef9b4b3c7552c7a8fdc945cf6f">&#9670;&#160;</a></span>m_weak_network</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;fourdst::atomic::Species, std::vector&lt;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a>&gt; &gt; gridfire::rates::weak::WeakReactionMap::m_weak_network</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak_8h.html">weak.h</a></li>
+<li>src/lib/reaction/weak/<a class="el" href="weak_8cpp.html">weak.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates.html">rates</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">weak</a></li><li class="navelem"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html">WeakReactionMap</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.js b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.js
new file mode 100644
index 00000000..2c108c59
--- /dev/null
+++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.js
@@ -0,0 +1,9 @@
+var classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map =
+[
+    [ "WeakReactionMap", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#aecc8c1b92d63da87827879ad5330c11e", null ],
+    [ "~WeakReactionMap", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a73cc5a9d4a236091bbb40f22ed66b2f1", null ],
+    [ "get_all_reactions", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a9ab9f6f64455eb46172ebda5e8cc3ec5", null ],
+    [ "get_species_reactions", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a290da6766a6d3094a5aae8b7cbcd0d70", null ],
+    [ "get_species_reactions", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#ad7345da84824495fb21c969c1a9c80f5", null ],
+    [ "m_weak_network", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a8169adef9b4b3c7552c7a8fdc945cf6f", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction-members.html b/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction-members.html
new file mode 100644
index 00000000..441fee8c
--- /dev/null
+++ b/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction-members.html
@@ -0,0 +1,171 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::reaction::LogicalReaclibReaction Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a69508797ca0793f6d3f58de4e0b97667">add_reaction</a>(const ReaclibReaction &amp;reaction)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a445777acbbee2032d83a256181a90e3c">all_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a1353d7d2208497b38799bf69f574c275">begin</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a211b1332dc12a1fee942523dbc688272">begin</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">calculate_energy_generation_rate</a>(const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80">calculate_energy_generation_rate</a>(const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a9b1363314159eaf9c56aaa233f5eebd6">calculate_log_rate_partial_deriv_wrt_T9</a>(double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;comp) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ac21a726884930e6a00792e7c3eb43f42">calculate_rate</a>(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ab5bdbe13239f1180f32fb0a14a60d0a9">calculate_rate</a>(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a19462806927500f72b7d3f578b3040de">calculate_rate</a>(const T T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#abe189c43e4d509d9d05dd205861ceddc">chapter</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad113b9cb64c449f9449c4cce4fa64076">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a171b690e1abaf23f11a94c39e9f8c944">contains</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a4e4811436d09afaa4a14c51d9af71f88">contains_product</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a65a12e5f6180873866cfaaf130fd1156">contains_reactant</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#aefaf6c4c32ae54a2882da0e031632a74">end</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ae0b38d499bf0c9ca58461ea2862a7d5a">end</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0b30c49925823c87980b4fca17c8282e">excess_energy</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a661dd461e51c37133f7f9931389fd3cc">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a06312f834439ccf93012dea53cab47ce">id</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a181b2c75af1f2701c43594c5bb2bac2d">is_reverse</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a0ff112dca1f88070effb6700429b42b4">LogicalReaclibReaction</a>(const std::vector&lt; ReaclibReaction &gt; &amp;reactions)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#adbcb383bac0f47c66251ee1b7c5f539d">m_chapter</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ca86e0f8f95ffb6d87ca295e44f14c5">m_id</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#abab0ed78925789856ebb119d60c6a53d">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a51f658789f34f96e0e6bd42cef5cbfe4">m_peName</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ac350a26bdf19d7c1d20db55a226e6063">m_products</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a498c202a259cbc315997ec68a2cb8a59">m_qValue</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ea3de0412395b7b617c4b71cbc2ab68">m_rateCoefficients</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#afe1b95bf9d81f7521b9f19bbd1305d01">m_rates</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7cf403bc519ce39a1af886432a653826">m_reactants</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#af52b42d940f6a09dba5d28898d2b0b1f">m_reverse</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7e79437a68947e176b8dd7dcbe27baab">m_sourceLabel</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a8c6f12a01c6d1fdeba1f0cc73128731e">m_sources</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a9205126955ad38f56e8aca3112bc150a">num_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8b6008e0f629329bfc62256f4f081b77">operator!=</a>(const ReaclibReaction &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a495ca800cc1dd224ce2a821a825afafd">operator&lt;&lt;</a>(std::ostream &amp;os, const LogicalReaclibReaction &amp;r)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae7c930525db447e39b4de18fbc1251a8">operator==</a>(const ReaclibReaction &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#af775f97f4d5e144e33bc6e0ba58a5851">peName</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a67c8fa4d5929c7a8cbca9b3d9dd2b704">product_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a5f563b99bb550d5bafa2a989502de019">products</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae47931948f12816eb890c0db4fff4d68">qValue</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#adfed51cf788a7ed4770cbd5945ddab2f">rateCoefficients</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a264112a230817a6080c770686e5bcc01">ReaclibReaction</a>(std::string_view id, std::string_view peName, int chapter, const std::vector&lt; fourdst::atomic::Species &gt; &amp;reactants, const std::vector&lt; fourdst::atomic::Species &gt; &amp;products, double qValue, std::string_view label, const RateCoefficientSet &amp;sets, bool reverse=false)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad85ca288289b25d482cbb8e3ff270028">reactant_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad095aba46860fec0e68386bf04f7f142">reactants</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a4c58951d9f7ab252717c226b0da80a9d">size</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a96d4ab87de02e9b0be3c248e2e955b4b">sourceLabel</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad4979f437dc787a5475c3a029804ed99">sources</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a57b2695d152360a6ba08776cc760e3a1">stoichiometry</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0f629cbfe95dc5643b5e3724be0db2f9">stoichiometry</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#acbfa2d4e23dff6641be21cc1e754be15">type</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae2b9b41a598c5f0dcd050b32985ea44e">~ReaclibReaction</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html b/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html
new file mode 100644
index 00000000..d51b5c20
--- /dev/null
+++ b/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html
@@ -0,0 +1,936 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::reaction::LogicalReaclibReaction Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::reaction::LogicalReaclibReaction Class Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Represents a "logical" reaction that aggregates rates from multiple sources.  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;reaction.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::reaction::LogicalReaclibReaction:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.png" usemap="#gridfire::reaction::LogicalReaclibReaction_map" alt=""/>
+  <map id="gridfire::reaction::LogicalReaclibReaction_map" name="gridfire::reaction::LogicalReaclibReaction_map">
+<area href="classgridfire_1_1reaction_1_1_reaclib_reaction.html" alt="gridfire::reaction::ReaclibReaction" shape="rect" coords="0,56,243,80"/>
+<area href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source." alt="gridfire::reaction::Reaction" shape="rect" coords="0,0,243,24"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a0ff112dca1f88070effb6700429b42b4" id="r_a0ff112dca1f88070effb6700429b42b4"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0ff112dca1f88070effb6700429b42b4">LogicalReaclibReaction</a> (const std::vector&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a> &gt; &amp;reactions)</td></tr>
+<tr class="memdesc:a0ff112dca1f88070effb6700429b42b4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a LogicalReaction from a vector of <code><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a></code> objects.  <br /></td></tr>
+<tr class="separator:a0ff112dca1f88070effb6700429b42b4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a69508797ca0793f6d3f58de4e0b97667" id="r_a69508797ca0793f6d3f58de4e0b97667"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a69508797ca0793f6d3f58de4e0b97667">add_reaction</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a> &amp;reaction)</td></tr>
+<tr class="memdesc:a69508797ca0793f6d3f58de4e0b97667"><td class="mdescLeft">&#160;</td><td class="mdescRight">Adds another <code><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a></code> source to this logical reaction.  <br /></td></tr>
+<tr class="separator:a69508797ca0793f6d3f58de4e0b97667"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4c58951d9f7ab252717c226b0da80a9d" id="r_a4c58951d9f7ab252717c226b0da80a9d"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4c58951d9f7ab252717c226b0da80a9d">size</a> () const</td></tr>
+<tr class="memdesc:a4c58951d9f7ab252717c226b0da80a9d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the number of source rates contributing to this logical reaction.  <br /></td></tr>
+<tr class="separator:a4c58951d9f7ab252717c226b0da80a9d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad4979f437dc787a5475c3a029804ed99" id="r_ad4979f437dc787a5475c3a029804ed99"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad4979f437dc787a5475c3a029804ed99">sources</a> () const</td></tr>
+<tr class="memdesc:ad4979f437dc787a5475c3a029804ed99"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the list of source labels for the aggregated rates.  <br /></td></tr>
+<tr class="separator:ad4979f437dc787a5475c3a029804ed99"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac21a726884930e6a00792e7c3eb43f42" id="r_ac21a726884930e6a00792e7c3eb43f42"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac21a726884930e6a00792e7c3eb43f42">calculate_rate</a> (double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td></tr>
+<tr class="memdesc:ac21a726884930e6a00792e7c3eb43f42"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the total reaction rate by summing all source rates.  <br /></td></tr>
+<tr class="separator:ac21a726884930e6a00792e7c3eb43f42"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9b1363314159eaf9c56aaa233f5eebd6" id="r_a9b1363314159eaf9c56aaa233f5eebd6"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9b1363314159eaf9c56aaa233f5eebd6">calculate_log_rate_partial_deriv_wrt_T9</a> (double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;comp) const override</td></tr>
+<tr class="memdesc:a9b1363314159eaf9c56aaa233f5eebd6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logarithmic partial derivative of the rate with respect to temperature.  <br /></td></tr>
+<tr class="separator:a9b1363314159eaf9c56aaa233f5eebd6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acbfa2d4e23dff6641be21cc1e754be15" id="r_acbfa2d4e23dff6641be21cc1e754be15"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#acbfa2d4e23dff6641be21cc1e754be15">type</a> () const override</td></tr>
+<tr class="memdesc:acbfa2d4e23dff6641be21cc1e754be15"><td class="mdescLeft">&#160;</td><td class="mdescRight">Category of this reaction (e.g., REACLIB, WEAK, LOGICAL_REACLIB).  <br /></td></tr>
+<tr class="separator:acbfa2d4e23dff6641be21cc1e754be15"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad113b9cb64c449f9449c4cce4fa64076" id="r_ad113b9cb64c449f9449c4cce4fa64076"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad113b9cb64c449f9449c4cce4fa64076">clone</a> () const override</td></tr>
+<tr class="memdesc:ad113b9cb64c449f9449c4cce4fa64076"><td class="mdescLeft">&#160;</td><td class="mdescRight">Polymorphic deep copy.  <br /></td></tr>
+<tr class="separator:ad113b9cb64c449f9449c4cce4fa64076"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab5bdbe13239f1180f32fb0a14a60d0a9" id="r_ab5bdbe13239f1180f32fb0a14a60d0a9"><td class="memItemLeft" align="right" valign="top">CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab5bdbe13239f1180f32fb0a14a60d0a9">calculate_rate</a> (CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td></tr>
+<tr class="memdesc:ab5bdbe13239f1180f32fb0a14a60d0a9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the total reaction rate using CppAD types.  <br /></td></tr>
+<tr class="separator:ab5bdbe13239f1180f32fb0a14a60d0a9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr><td colspan="2"><div class="groupHeader">Iterators</div></td></tr>
+<tr><td colspan="2"><div class="groupText"><p>Provides iterators to loop over the rate coefficient sets. </p>
+</div></td></tr>
+<tr class="memitem:a1353d7d2208497b38799bf69f574c275" id="r_a1353d7d2208497b38799bf69f574c275"><td class="memItemLeft" align="right" valign="top">auto&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1353d7d2208497b38799bf69f574c275">begin</a> ()</td></tr>
+<tr class="separator:a1353d7d2208497b38799bf69f574c275"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a211b1332dc12a1fee942523dbc688272" id="r_a211b1332dc12a1fee942523dbc688272"><td class="memItemLeft" align="right" valign="top">auto&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a211b1332dc12a1fee942523dbc688272">begin</a> () const</td></tr>
+<tr class="separator:a211b1332dc12a1fee942523dbc688272"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aefaf6c4c32ae54a2882da0e031632a74" id="r_aefaf6c4c32ae54a2882da0e031632a74"><td class="memItemLeft" align="right" valign="top">auto&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aefaf6c4c32ae54a2882da0e031632a74">end</a> ()</td></tr>
+<tr class="separator:aefaf6c4c32ae54a2882da0e031632a74"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae0b38d499bf0c9ca58461ea2862a7d5a" id="r_ae0b38d499bf0c9ca58461ea2862a7d5a"><td class="memItemLeft" align="right" valign="top">auto&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae0b38d499bf0c9ca58461ea2862a7d5a">end</a> () const</td></tr>
+<tr class="separator:ae0b38d499bf0c9ca58461ea2862a7d5a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td></tr>
+<tr class="memitem:ae2b9b41a598c5f0dcd050b32985ea44e inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_ae2b9b41a598c5f0dcd050b32985ea44e"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae2b9b41a598c5f0dcd050b32985ea44e">~ReaclibReaction</a> () override=default</td></tr>
+<tr class="separator:ae2b9b41a598c5f0dcd050b32985ea44e inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a264112a230817a6080c770686e5bcc01 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a264112a230817a6080c770686e5bcc01"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a264112a230817a6080c770686e5bcc01">ReaclibReaction</a> (std::string_view <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a06312f834439ccf93012dea53cab47ce">id</a>, std::string_view <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#af775f97f4d5e144e33bc6e0ba58a5851">peName</a>, int <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#abe189c43e4d509d9d05dd205861ceddc">chapter</a>, const std::vector&lt; fourdst::atomic::Species &gt; &amp;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad095aba46860fec0e68386bf04f7f142">reactants</a>, const std::vector&lt; fourdst::atomic::Species &gt; &amp;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a5f563b99bb550d5bafa2a989502de019">products</a>, double <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae47931948f12816eb890c0db4fff4d68">qValue</a>, std::string_view label, const <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> &amp;sets, bool reverse=false)</td></tr>
+<tr class="memdesc:a264112a230817a6080c770686e5bcc01 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> object.  <br /></td></tr>
+<tr class="separator:a264112a230817a6080c770686e5bcc01 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acd16b1daf13456b3523362a37b1bf9b0 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_acd16b1daf13456b3523362a37b1bf9b0"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#acd16b1daf13456b3523362a37b1bf9b0">calculate_rate</a> (double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td></tr>
+<tr class="memdesc:acd16b1daf13456b3523362a37b1bf9b0 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the reaction rate for a given temperature.  <br /></td></tr>
+<tr class="separator:acd16b1daf13456b3523362a37b1bf9b0 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afec5ccf7a8fb1ba56c8cc852ce858c5e inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_afec5ccf7a8fb1ba56c8cc852ce858c5e"><td class="memItemLeft" align="right" valign="top">CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#afec5ccf7a8fb1ba56c8cc852ce858c5e">calculate_rate</a> (CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td></tr>
+<tr class="memdesc:afec5ccf7a8fb1ba56c8cc852ce858c5e inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the reaction rate for a given temperature using CppAD types.  <br /></td></tr>
+<tr class="separator:afec5ccf7a8fb1ba56c8cc852ce858c5e inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ada6ec1ae05b9a92b58e6a4ecdf5a1656 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_ada6ec1ae05b9a92b58e6a4ecdf5a1656"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656">calculate_log_rate_partial_deriv_wrt_T9</a> (double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;comp) const override</td></tr>
+<tr class="memdesc:ada6ec1ae05b9a92b58e6a4ecdf5a1656 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logarithmic partial derivative of the rate with respect to temperature.  <br /></td></tr>
+<tr class="separator:ada6ec1ae05b9a92b58e6a4ecdf5a1656 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af775f97f4d5e144e33bc6e0ba58a5851 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_af775f97f4d5e144e33bc6e0ba58a5851"><td class="memItemLeft" align="right" valign="top">virtual std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#af775f97f4d5e144e33bc6e0ba58a5851">peName</a> () const</td></tr>
+<tr class="memdesc:af775f97f4d5e144e33bc6e0ba58a5851 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the reaction name in (projectile, ejectile) notation.  <br /></td></tr>
+<tr class="separator:af775f97f4d5e144e33bc6e0ba58a5851 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abe189c43e4d509d9d05dd205861ceddc inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_abe189c43e4d509d9d05dd205861ceddc"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#abe189c43e4d509d9d05dd205861ceddc">chapter</a> () const</td></tr>
+<tr class="memdesc:abe189c43e4d509d9d05dd205861ceddc inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the REACLIB chapter number.  <br /></td></tr>
+<tr class="separator:abe189c43e4d509d9d05dd205861ceddc inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a96d4ab87de02e9b0be3c248e2e955b4b inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a96d4ab87de02e9b0be3c248e2e955b4b"><td class="memItemLeft" align="right" valign="top">std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a96d4ab87de02e9b0be3c248e2e955b4b">sourceLabel</a> () const</td></tr>
+<tr class="memdesc:a96d4ab87de02e9b0be3c248e2e955b4b inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the source label for the rate data.  <br /></td></tr>
+<tr class="separator:a96d4ab87de02e9b0be3c248e2e955b4b inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3c0fbdd07f9a837bd031c5bdc58e0e8f inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a3c0fbdd07f9a837bd031c5bdc58e0e8f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a3c0fbdd07f9a837bd031c5bdc58e0e8f">type</a> () const override</td></tr>
+<tr class="memdesc:a3c0fbdd07f9a837bd031c5bdc58e0e8f inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Category of this reaction (e.g., REACLIB, WEAK, LOGICAL_REACLIB).  <br /></td></tr>
+<tr class="separator:a3c0fbdd07f9a837bd031c5bdc58e0e8f inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adfed51cf788a7ed4770cbd5945ddab2f inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_adfed51cf788a7ed4770cbd5945ddab2f"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#adfed51cf788a7ed4770cbd5945ddab2f">rateCoefficients</a> () const</td></tr>
+<tr class="memdesc:adfed51cf788a7ed4770cbd5945ddab2f inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the set of rate coefficients.  <br /></td></tr>
+<tr class="separator:adfed51cf788a7ed4770cbd5945ddab2f inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a171b690e1abaf23f11a94c39e9f8c944 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a171b690e1abaf23f11a94c39e9f8c944"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a171b690e1abaf23f11a94c39e9f8c944">contains</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a171b690e1abaf23f11a94c39e9f8c944 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the reaction involves a given species as a reactant or product.  <br /></td></tr>
+<tr class="separator:a171b690e1abaf23f11a94c39e9f8c944 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a65a12e5f6180873866cfaaf130fd1156 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a65a12e5f6180873866cfaaf130fd1156"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a65a12e5f6180873866cfaaf130fd1156">contains_reactant</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a65a12e5f6180873866cfaaf130fd1156 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the reaction involves a given species as a reactant.  <br /></td></tr>
+<tr class="separator:a65a12e5f6180873866cfaaf130fd1156 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4e4811436d09afaa4a14c51d9af71f88 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a4e4811436d09afaa4a14c51d9af71f88"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a4e4811436d09afaa4a14c51d9af71f88">contains_product</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a4e4811436d09afaa4a14c51d9af71f88 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the reaction involves a given species as a product.  <br /></td></tr>
+<tr class="separator:a4e4811436d09afaa4a14c51d9af71f88 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a445777acbbee2032d83a256181a90e3c inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a445777acbbee2032d83a256181a90e3c"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a445777acbbee2032d83a256181a90e3c">all_species</a> () const override</td></tr>
+<tr class="memdesc:a445777acbbee2032d83a256181a90e3c inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a set of all unique species involved in the reaction.  <br /></td></tr>
+<tr class="separator:a445777acbbee2032d83a256181a90e3c inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad85ca288289b25d482cbb8e3ff270028 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_ad85ca288289b25d482cbb8e3ff270028"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad85ca288289b25d482cbb8e3ff270028">reactant_species</a> () const override</td></tr>
+<tr class="memdesc:ad85ca288289b25d482cbb8e3ff270028 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a set of all unique reactant species.  <br /></td></tr>
+<tr class="separator:ad85ca288289b25d482cbb8e3ff270028 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a67c8fa4d5929c7a8cbca9b3d9dd2b704 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a67c8fa4d5929c7a8cbca9b3d9dd2b704"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a67c8fa4d5929c7a8cbca9b3d9dd2b704">product_species</a> () const override</td></tr>
+<tr class="memdesc:a67c8fa4d5929c7a8cbca9b3d9dd2b704 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a set of all unique product species.  <br /></td></tr>
+<tr class="separator:a67c8fa4d5929c7a8cbca9b3d9dd2b704 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9205126955ad38f56e8aca3112bc150a inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a9205126955ad38f56e8aca3112bc150a"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a9205126955ad38f56e8aca3112bc150a">num_species</a> () const override</td></tr>
+<tr class="memdesc:a9205126955ad38f56e8aca3112bc150a inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the number of unique species involved in the reaction.  <br /></td></tr>
+<tr class="separator:a9205126955ad38f56e8aca3112bc150a inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a57b2695d152360a6ba08776cc760e3a1 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a57b2695d152360a6ba08776cc760e3a1"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a57b2695d152360a6ba08776cc760e3a1">stoichiometry</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a57b2695d152360a6ba08776cc760e3a1 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the stoichiometric coefficient for a given species.  <br /></td></tr>
+<tr class="separator:a57b2695d152360a6ba08776cc760e3a1 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0f629cbfe95dc5643b5e3724be0db2f9 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a0f629cbfe95dc5643b5e3724be0db2f9"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, int &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0f629cbfe95dc5643b5e3724be0db2f9">stoichiometry</a> () const override</td></tr>
+<tr class="memdesc:a0f629cbfe95dc5643b5e3724be0db2f9 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a map of all species to their stoichiometric coefficients.  <br /></td></tr>
+<tr class="separator:a0f629cbfe95dc5643b5e3724be0db2f9 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a06312f834439ccf93012dea53cab47ce inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a06312f834439ccf93012dea53cab47ce"><td class="memItemLeft" align="right" valign="top">std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a06312f834439ccf93012dea53cab47ce">id</a> () const override</td></tr>
+<tr class="memdesc:a06312f834439ccf93012dea53cab47ce inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the unique identifier of the reaction.  <br /></td></tr>
+<tr class="separator:a06312f834439ccf93012dea53cab47ce inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae47931948f12816eb890c0db4fff4d68 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_ae47931948f12816eb890c0db4fff4d68"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae47931948f12816eb890c0db4fff4d68">qValue</a> () const override</td></tr>
+<tr class="memdesc:ae47931948f12816eb890c0db4fff4d68 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the Q-value of the reaction.  <br /></td></tr>
+<tr class="separator:ae47931948f12816eb890c0db4fff4d68 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad095aba46860fec0e68386bf04f7f142 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_ad095aba46860fec0e68386bf04f7f142"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad095aba46860fec0e68386bf04f7f142">reactants</a> () const override</td></tr>
+<tr class="memdesc:ad095aba46860fec0e68386bf04f7f142 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the vector of reactant species.  <br /></td></tr>
+<tr class="separator:ad095aba46860fec0e68386bf04f7f142 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5f563b99bb550d5bafa2a989502de019 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a5f563b99bb550d5bafa2a989502de019"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a5f563b99bb550d5bafa2a989502de019">products</a> () const override</td></tr>
+<tr class="memdesc:a5f563b99bb550d5bafa2a989502de019 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the vector of product species.  <br /></td></tr>
+<tr class="separator:a5f563b99bb550d5bafa2a989502de019 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a181b2c75af1f2701c43594c5bb2bac2d inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a181b2c75af1f2701c43594c5bb2bac2d"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a181b2c75af1f2701c43594c5bb2bac2d">is_reverse</a> () const override</td></tr>
+<tr class="memdesc:a181b2c75af1f2701c43594c5bb2bac2d inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if this is a reverse reaction rate.  <br /></td></tr>
+<tr class="separator:a181b2c75af1f2701c43594c5bb2bac2d inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0b30c49925823c87980b4fca17c8282e inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a0b30c49925823c87980b4fca17c8282e"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0b30c49925823c87980b4fca17c8282e">excess_energy</a> () const</td></tr>
+<tr class="memdesc:a0b30c49925823c87980b4fca17c8282e inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the excess energy from the mass difference of reactants and products.  <br /></td></tr>
+<tr class="separator:a0b30c49925823c87980b4fca17c8282e inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae7c930525db447e39b4de18fbc1251a8 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_ae7c930525db447e39b4de18fbc1251a8"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae7c930525db447e39b4de18fbc1251a8">operator==</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a> &amp;other) const</td></tr>
+<tr class="memdesc:ae7c930525db447e39b4de18fbc1251a8 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compares this reaction with another for equality based on their IDs.  <br /></td></tr>
+<tr class="separator:ae7c930525db447e39b4de18fbc1251a8 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8b6008e0f629329bfc62256f4f081b77 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a8b6008e0f629329bfc62256f4f081b77"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8b6008e0f629329bfc62256f4f081b77">operator!=</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a> &amp;other) const</td></tr>
+<tr class="memdesc:a8b6008e0f629329bfc62256f4f081b77 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compares this reaction with another for inequality.  <br /></td></tr>
+<tr class="separator:a8b6008e0f629329bfc62256f4f081b77 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a661dd461e51c37133f7f9931389fd3cc inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a661dd461e51c37133f7f9931389fd3cc"><td class="memItemLeft" align="right" valign="top">uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a661dd461e51c37133f7f9931389fd3cc">hash</a> (uint64_t seed) const override</td></tr>
+<tr class="memdesc:a661dd461e51c37133f7f9931389fd3cc inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes a hash for the reaction based on its ID.  <br /></td></tr>
+<tr class="separator:a661dd461e51c37133f7f9931389fd3cc inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a54fde02e7010e806136f976ab64b1740 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a54fde02e7010e806136f976ab64b1740"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a54fde02e7010e806136f976ab64b1740">clone</a> () const override</td></tr>
+<tr class="memdesc:a54fde02e7010e806136f976ab64b1740 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Polymorphic deep copy.  <br /></td></tr>
+<tr class="separator:a54fde02e7010e806136f976ab64b1740 inherit pub_methods_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1reaction_1_1_reaction"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1reaction_1_1_reaction')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td></tr>
+<tr class="memitem:ab1860df84843be70f97469761e11ab6a inherit pub_methods_classgridfire_1_1reaction_1_1_reaction" id="r_ab1860df84843be70f97469761e11ab6a"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a> ()=default</td></tr>
+<tr class="memdesc:ab1860df84843be70f97469761e11ab6a inherit pub_methods_classgridfire_1_1reaction_1_1_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for correct polymorphic cleanup.  <br /></td></tr>
+<tr class="separator:ab1860df84843be70f97469761e11ab6a inherit pub_methods_classgridfire_1_1reaction_1_1_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae66b446c98add7e00a1d960f4e7c60dd inherit pub_methods_classgridfire_1_1reaction_1_1_reaction" id="r_ae66b446c98add7e00a1d960f4e7c60dd"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">calculate_energy_generation_rate</a> (const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td></tr>
+<tr class="memdesc:ae66b446c98add7e00a1d960f4e7c60dd inherit pub_methods_classgridfire_1_1reaction_1_1_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convenience: energy generation rate from this reaction (double version).  <br /></td></tr>
+<tr class="separator:ae66b446c98add7e00a1d960f4e7c60dd inherit pub_methods_classgridfire_1_1reaction_1_1_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4282f85c34d6db1994c07e7a40f66d80 inherit pub_methods_classgridfire_1_1reaction_1_1_reaction" id="r_a4282f85c34d6db1994c07e7a40f66d80"><td class="memItemLeft" align="right" valign="top">virtual CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80">calculate_energy_generation_rate</a> (const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td></tr>
+<tr class="memdesc:a4282f85c34d6db1994c07e7a40f66d80 inherit pub_methods_classgridfire_1_1reaction_1_1_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convenience: AD-enabled energy generation rate (AD version).  <br /></td></tr>
+<tr class="separator:a4282f85c34d6db1994c07e7a40f66d80 inherit pub_methods_classgridfire_1_1reaction_1_1_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:a19462806927500f72b7d3f578b3040de" id="r_a19462806927500f72b7d3f578b3040de"><td class="memTemplParams" colspan="2">template&lt;typename T&gt; </td></tr>
+<tr class="memitem:a19462806927500f72b7d3f578b3040de"><td class="memTemplItemLeft" align="right" valign="top">T&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#a19462806927500f72b7d3f578b3040de">calculate_rate</a> (const T T9) const</td></tr>
+<tr class="memdesc:a19462806927500f72b7d3f578b3040de"><td class="mdescLeft">&#160;</td><td class="mdescRight">Template implementation for calculating the total reaction rate.  <br /></td></tr>
+<tr class="separator:a19462806927500f72b7d3f578b3040de"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a8c6f12a01c6d1fdeba1f0cc73128731e" id="r_a8c6f12a01c6d1fdeba1f0cc73128731e"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8c6f12a01c6d1fdeba1f0cc73128731e">m_sources</a></td></tr>
+<tr class="memdesc:a8c6f12a01c6d1fdeba1f0cc73128731e"><td class="mdescLeft">&#160;</td><td class="mdescRight">List of source labels.  <br /></td></tr>
+<tr class="separator:a8c6f12a01c6d1fdeba1f0cc73128731e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afe1b95bf9d81f7521b9f19bbd1305d01" id="r_afe1b95bf9d81f7521b9f19bbd1305d01"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afe1b95bf9d81f7521b9f19bbd1305d01">m_rates</a></td></tr>
+<tr class="memdesc:afe1b95bf9d81f7521b9f19bbd1305d01"><td class="mdescLeft">&#160;</td><td class="mdescRight">List of rate coefficient sets from each source.  <br /></td></tr>
+<tr class="separator:afe1b95bf9d81f7521b9f19bbd1305d01"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="friends" name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:a495ca800cc1dd224ce2a821a825afafd" id="r_a495ca800cc1dd224ce2a821a825afafd"><td class="memItemLeft" align="right" valign="top">std::ostream &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a495ca800cc1dd224ce2a821a825afafd">operator&lt;&lt;</a> (std::ostream &amp;os, const <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">LogicalReaclibReaction</a> &amp;r)</td></tr>
+<tr class="separator:a495ca800cc1dd224ce2a821a825afafd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td></tr>
+<tr class="memitem:abab0ed78925789856ebb119d60c6a53d inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_abab0ed78925789856ebb119d60c6a53d"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#abab0ed78925789856ebb119d60c6a53d">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="separator:abab0ed78925789856ebb119d60c6a53d inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8ca86e0f8f95ffb6d87ca295e44f14c5 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a8ca86e0f8f95ffb6d87ca295e44f14c5"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ca86e0f8f95ffb6d87ca295e44f14c5">m_id</a></td></tr>
+<tr class="memdesc:a8ca86e0f8f95ffb6d87ca295e44f14c5 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Unique identifier for the reaction (e.g., "h1+h1=&gt;h2+e+nu").  <br /></td></tr>
+<tr class="separator:a8ca86e0f8f95ffb6d87ca295e44f14c5 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a51f658789f34f96e0e6bd42cef5cbfe4 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a51f658789f34f96e0e6bd42cef5cbfe4"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a51f658789f34f96e0e6bd42cef5cbfe4">m_peName</a></td></tr>
+<tr class="memdesc:a51f658789f34f96e0e6bd42cef5cbfe4 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name of the reaction in (projectile, ejectile) notation (e.g. "p(p,g)d").  <br /></td></tr>
+<tr class="separator:a51f658789f34f96e0e6bd42cef5cbfe4 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adbcb383bac0f47c66251ee1b7c5f539d inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_adbcb383bac0f47c66251ee1b7c5f539d"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#adbcb383bac0f47c66251ee1b7c5f539d">m_chapter</a></td></tr>
+<tr class="memdesc:adbcb383bac0f47c66251ee1b7c5f539d inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Chapter number from the REACLIB database, defining the reaction structure.  <br /></td></tr>
+<tr class="separator:adbcb383bac0f47c66251ee1b7c5f539d inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a498c202a259cbc315997ec68a2cb8a59 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a498c202a259cbc315997ec68a2cb8a59"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a498c202a259cbc315997ec68a2cb8a59">m_qValue</a> = 0.0</td></tr>
+<tr class="memdesc:a498c202a259cbc315997ec68a2cb8a59 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Q-value of the reaction in MeV.  <br /></td></tr>
+<tr class="separator:a498c202a259cbc315997ec68a2cb8a59 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7cf403bc519ce39a1af886432a653826 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a7cf403bc519ce39a1af886432a653826"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7cf403bc519ce39a1af886432a653826">m_reactants</a></td></tr>
+<tr class="memdesc:a7cf403bc519ce39a1af886432a653826 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reactants of the reaction.  <br /></td></tr>
+<tr class="separator:a7cf403bc519ce39a1af886432a653826 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac350a26bdf19d7c1d20db55a226e6063 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_ac350a26bdf19d7c1d20db55a226e6063"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ac350a26bdf19d7c1d20db55a226e6063">m_products</a></td></tr>
+<tr class="memdesc:ac350a26bdf19d7c1d20db55a226e6063 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Products of the reaction.  <br /></td></tr>
+<tr class="separator:ac350a26bdf19d7c1d20db55a226e6063 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7e79437a68947e176b8dd7dcbe27baab inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a7e79437a68947e176b8dd7dcbe27baab"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7e79437a68947e176b8dd7dcbe27baab">m_sourceLabel</a></td></tr>
+<tr class="memdesc:a7e79437a68947e176b8dd7dcbe27baab inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Source label for the rate data (e.g., "wc12w", "st08").  <br /></td></tr>
+<tr class="separator:a7e79437a68947e176b8dd7dcbe27baab inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8ea3de0412395b7b617c4b71cbc2ab68 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_a8ea3de0412395b7b617c4b71cbc2ab68"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ea3de0412395b7b617c4b71cbc2ab68">m_rateCoefficients</a></td></tr>
+<tr class="memdesc:a8ea3de0412395b7b617c4b71cbc2ab68 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">The seven rate coefficients.  <br /></td></tr>
+<tr class="separator:a8ea3de0412395b7b617c4b71cbc2ab68 inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af52b42d940f6a09dba5d28898d2b0b1f inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction" id="r_af52b42d940f6a09dba5d28898d2b0b1f"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#af52b42d940f6a09dba5d28898d2b0b1f">m_reverse</a> = false</td></tr>
+<tr class="memdesc:af52b42d940f6a09dba5d28898d2b0b1f inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Flag indicating if this is a reverse reaction rate.  <br /></td></tr>
+<tr class="separator:af52b42d940f6a09dba5d28898d2b0b1f inherit pro_attribs_classgridfire_1_1reaction_1_1_reaclib_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Represents a "logical" reaction that aggregates rates from multiple sources. </p>
+<p>A <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html" title="Represents a &quot;logical&quot; reaction that aggregates rates from multiple sources.">LogicalReaclibReaction</a> shares the same reactants and products but combines rates from different evaluations (e.g., "wc12" and "st08" for the same physical reaction). The total rate is the sum of the individual rates. It inherits from <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a>, using the properties of the first provided reaction as its base properties (reactants, products, Q-value, etc.). </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a0ff112dca1f88070effb6700429b42b4" name="a0ff112dca1f88070effb6700429b42b4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0ff112dca1f88070effb6700429b42b4">&#9670;&#160;</a></span>LogicalReaclibReaction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::LogicalReaclibReaction::LogicalReaclibReaction </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a> &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel explicit">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs a LogicalReaction from a vector of <code><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a></code> objects. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>A vector of reactions that represent the same logical process. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>if the provided reactions have inconsistent Q-values. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a69508797ca0793f6d3f58de4e0b97667" name="a69508797ca0793f6d3f58de4e0b97667"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a69508797ca0793f6d3f58de4e0b97667">&#9670;&#160;</a></span>add_reaction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::reaction::LogicalReaclibReaction::add_reaction </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reaction</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Adds another <code><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a></code> source to this logical reaction. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The reaction to add. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>if the reaction has a different <code>peName</code>, a duplicate source label, or an inconsistent Q-value. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a1353d7d2208497b38799bf69f574c275" name="a1353d7d2208497b38799bf69f574c275"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1353d7d2208497b38799bf69f574c275">&#9670;&#160;</a></span>begin() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::reaction::LogicalReaclibReaction::begin </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a211b1332dc12a1fee942523dbc688272" name="a211b1332dc12a1fee942523dbc688272"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a211b1332dc12a1fee942523dbc688272">&#9670;&#160;</a></span>begin() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::reaction::LogicalReaclibReaction::begin </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a9b1363314159eaf9c56aaa233f5eebd6" name="a9b1363314159eaf9c56aaa233f5eebd6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9b1363314159eaf9c56aaa233f5eebd6">&#9670;&#160;</a></span>calculate_log_rate_partial_deriv_wrt_T9()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::reaction::LogicalReaclibReaction::calculate_log_rate_partial_deriv_wrt_T9 </td>
+          <td>(</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logarithmic partial derivative of the rate with respect to temperature. </p>
+<p>Implementations return d(ln rate)/d(ln T9) or an equivalent measure (as documented by the concrete class), evaluated at the provided state.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK (10^9 K). </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density (g cm^-3). </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object providing composition in a convenient form. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The logarithmic temperature derivative of the rate. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa2b615e764bb005e526ca9327319c735">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a19462806927500f72b7d3f578b3040de" name="a19462806927500f72b7d3f578b3040de"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a19462806927500f72b7d3f578b3040de">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[1/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">T gridfire::reaction::LogicalReaclibReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">const T</td>          <td class="paramname"><span class="paramname"><em>T9</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Template implementation for calculating the total reaction rate. </p>
+<dl class="tparams"><dt>Template Parameters</dt><dd>
+  <table class="tparams">
+    <tr><td class="paramname">T</td><td>The numeric type (double or CppAD::AD&lt;double&gt;). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The total calculated reaction rate.</dd></dl>
+<p>This method iterates through all stored <code><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html" title="Holds the seven coefficients for the REACLIB rate equation.">RateCoefficientSet</a></code>s, calculates the rate for each, and returns their sum. </p>
+
+</div>
+</div>
+<a id="ab5bdbe13239f1180f32fb0a14a60d0a9" name="ab5bdbe13239f1180f32fb0a14a60d0a9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab5bdbe13239f1180f32fb0a14a60d0a9">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[2/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">CppAD::AD&lt; double &gt; gridfire::reaction::LogicalReaclibReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>index_to_species_map</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the total reaction rate using CppAD types. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K, as a CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">rho</td><td></td></tr>
+    <tr><td class="paramname">Ye</td><td></td></tr>
+    <tr><td class="paramname">mue</td><td></td></tr>
+    <tr><td class="paramname">Y</td><td></td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td></td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The total calculated reaction rate, as a CppAD::AD&lt;double&gt;. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#af8303d67df61fc9e31ce054f0e8a3e14">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="ac21a726884930e6a00792e7c3eb43f42" name="ac21a726884930e6a00792e7c3eb43f42"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac21a726884930e6a00792e7c3eb43f42">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[3/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::reaction::LogicalReaclibReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>index_to_species_map</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the total reaction rate by summing all source rates. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td></td></tr>
+    <tr><td class="paramname">Ye</td><td></td></tr>
+    <tr><td class="paramname">mue</td><td></td></tr>
+    <tr><td class="paramname">Y</td><td></td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td></td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The total calculated reaction rate. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a83c121480533593adfd68c4a67a649f1">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="ad113b9cb64c449f9449c4cce4fa64076" name="ad113b9cb64c449f9449c4cce4fa64076"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad113b9cb64c449f9449c4cce4fa64076">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt; gridfire::reaction::LogicalReaclibReaction::clone </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Polymorphic deep copy. </p>
+<dl class="section return"><dt>Returns</dt><dd>A std::unique_ptr owning a new <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> equal to this one. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab95ce7fb022a9432bdc77f14679221ee">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="aefaf6c4c32ae54a2882da0e031632a74" name="aefaf6c4c32ae54a2882da0e031632a74"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aefaf6c4c32ae54a2882da0e031632a74">&#9670;&#160;</a></span>end() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::reaction::LogicalReaclibReaction::end </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae0b38d499bf0c9ca58461ea2862a7d5a" name="ae0b38d499bf0c9ca58461ea2862a7d5a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae0b38d499bf0c9ca58461ea2862a7d5a">&#9670;&#160;</a></span>end() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::reaction::LogicalReaclibReaction::end </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a4c58951d9f7ab252717c226b0da80a9d" name="a4c58951d9f7ab252717c226b0da80a9d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4c58951d9f7ab252717c226b0da80a9d">&#9670;&#160;</a></span>size()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::reaction::LogicalReaclibReaction::size </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the number of source rates contributing to this logical reaction. </p>
+<dl class="section return"><dt>Returns</dt><dd>The number of aggregated rates. </dd></dl>
+
+</div>
+</div>
+<a id="ad4979f437dc787a5475c3a029804ed99" name="ad4979f437dc787a5475c3a029804ed99"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad4979f437dc787a5475c3a029804ed99">&#9670;&#160;</a></span>sources()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; std::string &gt; gridfire::reaction::LogicalReaclibReaction::sources </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the list of source labels for the aggregated rates. </p>
+<dl class="section return"><dt>Returns</dt><dd>A vector of source label strings. </dd></dl>
+
+</div>
+</div>
+<a id="acbfa2d4e23dff6641be21cc1e754be15" name="acbfa2d4e23dff6641be21cc1e754be15"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acbfa2d4e23dff6641be21cc1e754be15">&#9670;&#160;</a></span>type()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a> gridfire::reaction::LogicalReaclibReaction::type </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Category of this reaction (e.g., REACLIB, WEAK, LOGICAL_REACLIB). </p>
+<dl class="section return"><dt>Returns</dt><dd>Enumerated reaction type for runtime dispatch and filtering. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Friends And Related Symbol Documentation</h2>
+<a id="a495ca800cc1dd224ce2a821a825afafd" name="a495ca800cc1dd224ce2a821a825afafd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a495ca800cc1dd224ce2a821a825afafd">&#9670;&#160;</a></span>operator&lt;&lt;</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::ostream &amp; operator&lt;&lt; </td>
+          <td>(</td>
+          <td class="paramtype">std::ostream &amp;</td>          <td class="paramname"><span class="paramname"><em>os</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">LogicalReaclibReaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>r</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel friend">friend</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="afe1b95bf9d81f7521b9f19bbd1305d01" name="afe1b95bf9d81f7521b9f19bbd1305d01"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afe1b95bf9d81f7521b9f19bbd1305d01">&#9670;&#160;</a></span>m_rates</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;<a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a>&gt; gridfire::reaction::LogicalReaclibReaction::m_rates</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>List of rate coefficient sets from each source. </p>
+
+</div>
+</div>
+<a id="a8c6f12a01c6d1fdeba1f0cc73128731e" name="a8c6f12a01c6d1fdeba1f0cc73128731e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8c6f12a01c6d1fdeba1f0cc73128731e">&#9670;&#160;</a></span>m_sources</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;std::string&gt; gridfire::reaction::LogicalReaclibReaction::m_sources</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>List of source labels. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/reaction/<a class="el" href="reaction_8h.html">reaction.h</a></li>
+<li>src/lib/reaction/<a class="el" href="reaction_8cpp.html">reaction.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1reaction.html">reaction</a></li><li class="navelem"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">LogicalReaclibReaction</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.js b/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.js
new file mode 100644
index 00000000..0ae5cb64
--- /dev/null
+++ b/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.js
@@ -0,0 +1,20 @@
+var classgridfire_1_1reaction_1_1_logical_reaclib_reaction =
+[
+    [ "LogicalReaclibReaction", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a0ff112dca1f88070effb6700429b42b4", null ],
+    [ "add_reaction", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a69508797ca0793f6d3f58de4e0b97667", null ],
+    [ "begin", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a1353d7d2208497b38799bf69f574c275", null ],
+    [ "begin", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a211b1332dc12a1fee942523dbc688272", null ],
+    [ "calculate_log_rate_partial_deriv_wrt_T9", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a9b1363314159eaf9c56aaa233f5eebd6", null ],
+    [ "calculate_rate", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a19462806927500f72b7d3f578b3040de", null ],
+    [ "calculate_rate", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ab5bdbe13239f1180f32fb0a14a60d0a9", null ],
+    [ "calculate_rate", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ac21a726884930e6a00792e7c3eb43f42", null ],
+    [ "clone", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad113b9cb64c449f9449c4cce4fa64076", null ],
+    [ "end", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#aefaf6c4c32ae54a2882da0e031632a74", null ],
+    [ "end", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ae0b38d499bf0c9ca58461ea2862a7d5a", null ],
+    [ "size", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a4c58951d9f7ab252717c226b0da80a9d", null ],
+    [ "sources", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad4979f437dc787a5475c3a029804ed99", null ],
+    [ "type", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#acbfa2d4e23dff6641be21cc1e754be15", null ],
+    [ "operator<<", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a495ca800cc1dd224ce2a821a825afafd", null ],
+    [ "m_rates", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#afe1b95bf9d81f7521b9f19bbd1305d01", null ],
+    [ "m_sources", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a8c6f12a01c6d1fdeba1f0cc73128731e", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.png b/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.png
new file mode 100644
index 0000000000000000000000000000000000000000..80a0faf6a7093f45ccfa31048273d24d23b776e0
GIT binary patch
literal 1175
zcmeAS@N?(olHy`uVBq!ia0vp^pMki8gBeJ&p4H_CQqloFA+G=b{|7Q(y!l$%e`vXd
zfo6fk^fNCWJa_;UH$5A+1SrQ@666=m0OW&#In(Sb3=Awvo-U3d6^w7^zMiyMM}STK
z)~YLa{)^Tdb{WY9em`5sz2uERA=`_B59@cWd#&Xx>kw*^-tZ~&9K+MkXDrXSa(v`d
zXfOZa=k~&$A^Od7#wQ<?KiA|-{MMYWUfnOxb-!3HearuOYCnwiH<s;~eca;u64(Ex
zPx>p1&poNp<yB~ZeQtgo`}M-6^!V@A|B6iadE_xIxn5?|_|t1Q+lgn>io5h>URP}A
z|MTGToE`J^mjTW9pL17m$~B&&J3sF=X^{DM)n@(U+EXhx^Z)r<=_h`#$X<T!+r_;*
zpVue?O;>+j_A9Au-Q~QPD@UBo*F}^wID4$Sy0dl$+l2FbzkmK*u5uv1u-=~ek8j@E
zxBJ)D6z4MkiJfKa@Dt?6O6&62>sMP<{_^R2uIk~M8^8Y7677;Y?Qr$j#l_a!Radgj
z+N?6wzj)dbU~o(du{#?%>C|#d?;xONPp$dSbUdG4o};?521C(4x9g>`sVkUQbUot<
zusbWcpk~wD!!a!a?-`0J+TW+N{A1p5bb?s5T|di-2d`}6vub{}GwS@Xxmj&<Mg9Lb
zPZbBY<L4gte7k>{rT*XB2<tm%ZO@x#UaaT+nS5`K@ywhhzMp0C%ar-87$OQ@{K?EM
z=>6-z?_K$yr&%=<@345RfBQp4#r{$$!-kVH;h{U>(wrUM#+N=R`-}Y!PA}iE#MHU)
zU5(}2Bz6Ywx`cVxKiWOLa+6(d=~H*RLci&kA%XmM+w(ukzkhaquE|@jpZ0u~+=fhF
z8?VP!CC9Z|o<z+(R($K`&e|J{2h^6oe=eP$-0<Hx^0(vyg>%=+8c#jXmR?{$`+(+9
z3~6hc83|0X#+!kWl$Q2%^GlnsufSA$?u-s7*&a*#x@yz;_x5RN(L8UDE6#JDHM6qs
zS!Ml~w6toOZRu%cPH#%}t5*0gd#ZBj%o$_re&bv9{=$EL3MaoUFgHg^&37(K$o-8m
zUisPW_hp;ov+tg`JJILd`~`_B8*iSx{&(K7nb&?O?c_{*Y06vpv1IE0zY3Y!_Lq87
zUe0;MecbBa+h*PVuZA0gN=`o3JDXu|Z`8Tt!JBj4ThcV-to_gGRNLhLzvQ8JZnM3@
zH6i~w+pmAC{QYyH^tqQ>k?)=_-dek*n{V#^UGvT7JTJDcHM9;dU#Hi9@})@poN0M;
zE;HS+-M)O+*XBFLzYA1WfB)ROedElVwfpWp{8ndX{F^KOeZgCq@b;NE%YRh0X9L5@
qDgzWwm*<>4bL#n987Gd?kMf`Rzx8q(lxznUAq<|belF{r5}E*@q*q@6

literal 0
HcmV?d00001

diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction-members.html b/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction-members.html
new file mode 100644
index 00000000..b909b9aa
--- /dev/null
+++ b/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction-members.html
@@ -0,0 +1,161 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1reaction_1_1_reaclib_reaction.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::reaction::ReaclibReaction Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a445777acbbee2032d83a256181a90e3c">all_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">calculate_energy_generation_rate</a>(const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80">calculate_energy_generation_rate</a>(const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656">calculate_log_rate_partial_deriv_wrt_T9</a>(double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;comp) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#acd16b1daf13456b3523362a37b1bf9b0">calculate_rate</a>(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#afec5ccf7a8fb1ba56c8cc852ce858c5e">calculate_rate</a>(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#aeb177f9cf69e4f97c4518a27e6480523">calculate_rate</a>(const T T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#abe189c43e4d509d9d05dd205861ceddc">chapter</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a54fde02e7010e806136f976ab64b1740">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a171b690e1abaf23f11a94c39e9f8c944">contains</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a4e4811436d09afaa4a14c51d9af71f88">contains_product</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a65a12e5f6180873866cfaaf130fd1156">contains_reactant</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0b30c49925823c87980b4fca17c8282e">excess_energy</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a661dd461e51c37133f7f9931389fd3cc">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a06312f834439ccf93012dea53cab47ce">id</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a181b2c75af1f2701c43594c5bb2bac2d">is_reverse</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#adbcb383bac0f47c66251ee1b7c5f539d">m_chapter</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ca86e0f8f95ffb6d87ca295e44f14c5">m_id</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#abab0ed78925789856ebb119d60c6a53d">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a51f658789f34f96e0e6bd42cef5cbfe4">m_peName</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ac350a26bdf19d7c1d20db55a226e6063">m_products</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a498c202a259cbc315997ec68a2cb8a59">m_qValue</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ea3de0412395b7b617c4b71cbc2ab68">m_rateCoefficients</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7cf403bc519ce39a1af886432a653826">m_reactants</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#af52b42d940f6a09dba5d28898d2b0b1f">m_reverse</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7e79437a68947e176b8dd7dcbe27baab">m_sourceLabel</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a9205126955ad38f56e8aca3112bc150a">num_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8b6008e0f629329bfc62256f4f081b77">operator!=</a>(const ReaclibReaction &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae24ad1e38daab536aec6ac72c67e8615">operator&lt;&lt;</a>(std::ostream &amp;os, const ReaclibReaction &amp;r)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae7c930525db447e39b4de18fbc1251a8">operator==</a>(const ReaclibReaction &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#af775f97f4d5e144e33bc6e0ba58a5851">peName</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a67c8fa4d5929c7a8cbca9b3d9dd2b704">product_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a5f563b99bb550d5bafa2a989502de019">products</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae47931948f12816eb890c0db4fff4d68">qValue</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#adfed51cf788a7ed4770cbd5945ddab2f">rateCoefficients</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a264112a230817a6080c770686e5bcc01">ReaclibReaction</a>(std::string_view id, std::string_view peName, int chapter, const std::vector&lt; fourdst::atomic::Species &gt; &amp;reactants, const std::vector&lt; fourdst::atomic::Species &gt; &amp;products, double qValue, std::string_view label, const RateCoefficientSet &amp;sets, bool reverse=false)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad85ca288289b25d482cbb8e3ff270028">reactant_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad095aba46860fec0e68386bf04f7f142">reactants</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a96d4ab87de02e9b0be3c248e2e955b4b">sourceLabel</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a57b2695d152360a6ba08776cc760e3a1">stoichiometry</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0f629cbfe95dc5643b5e3724be0db2f9">stoichiometry</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a3c0fbdd07f9a837bd031c5bdc58e0e8f">type</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae2b9b41a598c5f0dcd050b32985ea44e">~ReaclibReaction</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction.html b/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction.html
new file mode 100644
index 00000000..6309b854
--- /dev/null
+++ b/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction.html
@@ -0,0 +1,1631 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::reaction::ReaclibReaction Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1reaction_1_1_reaclib_reaction.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pro-attribs">Protected Attributes</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::reaction::ReaclibReaction Class Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;reaction.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::reaction::ReaclibReaction:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="classgridfire_1_1reaction_1_1_reaclib_reaction.png" usemap="#gridfire::reaction::ReaclibReaction_map" alt=""/>
+  <map id="gridfire::reaction::ReaclibReaction_map" name="gridfire::reaction::ReaclibReaction_map">
+<area href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source." alt="gridfire::reaction::Reaction" shape="rect" coords="0,0,243,24"/>
+<area href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html" title="Represents a &quot;logical&quot; reaction that aggregates rates from multiple sources." alt="gridfire::reaction::LogicalReaclibReaction" shape="rect" coords="0,112,243,136"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ae2b9b41a598c5f0dcd050b32985ea44e" id="r_ae2b9b41a598c5f0dcd050b32985ea44e"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae2b9b41a598c5f0dcd050b32985ea44e">~ReaclibReaction</a> () override=default</td></tr>
+<tr class="separator:ae2b9b41a598c5f0dcd050b32985ea44e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a264112a230817a6080c770686e5bcc01" id="r_a264112a230817a6080c770686e5bcc01"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a264112a230817a6080c770686e5bcc01">ReaclibReaction</a> (std::string_view <a class="el" href="#a06312f834439ccf93012dea53cab47ce">id</a>, std::string_view <a class="el" href="#af775f97f4d5e144e33bc6e0ba58a5851">peName</a>, int <a class="el" href="#abe189c43e4d509d9d05dd205861ceddc">chapter</a>, const std::vector&lt; fourdst::atomic::Species &gt; &amp;<a class="el" href="#ad095aba46860fec0e68386bf04f7f142">reactants</a>, const std::vector&lt; fourdst::atomic::Species &gt; &amp;<a class="el" href="#a5f563b99bb550d5bafa2a989502de019">products</a>, double <a class="el" href="#ae47931948f12816eb890c0db4fff4d68">qValue</a>, std::string_view label, const <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> &amp;sets, bool reverse=false)</td></tr>
+<tr class="memdesc:a264112a230817a6080c770686e5bcc01"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> object.  <br /></td></tr>
+<tr class="separator:a264112a230817a6080c770686e5bcc01"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acd16b1daf13456b3523362a37b1bf9b0" id="r_acd16b1daf13456b3523362a37b1bf9b0"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#acd16b1daf13456b3523362a37b1bf9b0">calculate_rate</a> (double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td></tr>
+<tr class="memdesc:acd16b1daf13456b3523362a37b1bf9b0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the reaction rate for a given temperature.  <br /></td></tr>
+<tr class="separator:acd16b1daf13456b3523362a37b1bf9b0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afec5ccf7a8fb1ba56c8cc852ce858c5e" id="r_afec5ccf7a8fb1ba56c8cc852ce858c5e"><td class="memItemLeft" align="right" valign="top">CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afec5ccf7a8fb1ba56c8cc852ce858c5e">calculate_rate</a> (CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td></tr>
+<tr class="memdesc:afec5ccf7a8fb1ba56c8cc852ce858c5e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the reaction rate for a given temperature using CppAD types.  <br /></td></tr>
+<tr class="separator:afec5ccf7a8fb1ba56c8cc852ce858c5e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ada6ec1ae05b9a92b58e6a4ecdf5a1656" id="r_ada6ec1ae05b9a92b58e6a4ecdf5a1656"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ada6ec1ae05b9a92b58e6a4ecdf5a1656">calculate_log_rate_partial_deriv_wrt_T9</a> (double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;comp) const override</td></tr>
+<tr class="memdesc:ada6ec1ae05b9a92b58e6a4ecdf5a1656"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logarithmic partial derivative of the rate with respect to temperature.  <br /></td></tr>
+<tr class="separator:ada6ec1ae05b9a92b58e6a4ecdf5a1656"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af775f97f4d5e144e33bc6e0ba58a5851" id="r_af775f97f4d5e144e33bc6e0ba58a5851"><td class="memItemLeft" align="right" valign="top">virtual std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af775f97f4d5e144e33bc6e0ba58a5851">peName</a> () const</td></tr>
+<tr class="memdesc:af775f97f4d5e144e33bc6e0ba58a5851"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the reaction name in (projectile, ejectile) notation.  <br /></td></tr>
+<tr class="separator:af775f97f4d5e144e33bc6e0ba58a5851"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abe189c43e4d509d9d05dd205861ceddc" id="r_abe189c43e4d509d9d05dd205861ceddc"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abe189c43e4d509d9d05dd205861ceddc">chapter</a> () const</td></tr>
+<tr class="memdesc:abe189c43e4d509d9d05dd205861ceddc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the REACLIB chapter number.  <br /></td></tr>
+<tr class="separator:abe189c43e4d509d9d05dd205861ceddc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a96d4ab87de02e9b0be3c248e2e955b4b" id="r_a96d4ab87de02e9b0be3c248e2e955b4b"><td class="memItemLeft" align="right" valign="top">std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a96d4ab87de02e9b0be3c248e2e955b4b">sourceLabel</a> () const</td></tr>
+<tr class="memdesc:a96d4ab87de02e9b0be3c248e2e955b4b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the source label for the rate data.  <br /></td></tr>
+<tr class="separator:a96d4ab87de02e9b0be3c248e2e955b4b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3c0fbdd07f9a837bd031c5bdc58e0e8f" id="r_a3c0fbdd07f9a837bd031c5bdc58e0e8f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3c0fbdd07f9a837bd031c5bdc58e0e8f">type</a> () const override</td></tr>
+<tr class="memdesc:a3c0fbdd07f9a837bd031c5bdc58e0e8f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Category of this reaction (e.g., REACLIB, WEAK, LOGICAL_REACLIB).  <br /></td></tr>
+<tr class="separator:a3c0fbdd07f9a837bd031c5bdc58e0e8f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adfed51cf788a7ed4770cbd5945ddab2f" id="r_adfed51cf788a7ed4770cbd5945ddab2f"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#adfed51cf788a7ed4770cbd5945ddab2f">rateCoefficients</a> () const</td></tr>
+<tr class="memdesc:adfed51cf788a7ed4770cbd5945ddab2f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the set of rate coefficients.  <br /></td></tr>
+<tr class="separator:adfed51cf788a7ed4770cbd5945ddab2f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a171b690e1abaf23f11a94c39e9f8c944" id="r_a171b690e1abaf23f11a94c39e9f8c944"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a171b690e1abaf23f11a94c39e9f8c944">contains</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a171b690e1abaf23f11a94c39e9f8c944"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the reaction involves a given species as a reactant or product.  <br /></td></tr>
+<tr class="separator:a171b690e1abaf23f11a94c39e9f8c944"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a65a12e5f6180873866cfaaf130fd1156" id="r_a65a12e5f6180873866cfaaf130fd1156"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a65a12e5f6180873866cfaaf130fd1156">contains_reactant</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a65a12e5f6180873866cfaaf130fd1156"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the reaction involves a given species as a reactant.  <br /></td></tr>
+<tr class="separator:a65a12e5f6180873866cfaaf130fd1156"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4e4811436d09afaa4a14c51d9af71f88" id="r_a4e4811436d09afaa4a14c51d9af71f88"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4e4811436d09afaa4a14c51d9af71f88">contains_product</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a4e4811436d09afaa4a14c51d9af71f88"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the reaction involves a given species as a product.  <br /></td></tr>
+<tr class="separator:a4e4811436d09afaa4a14c51d9af71f88"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a445777acbbee2032d83a256181a90e3c" id="r_a445777acbbee2032d83a256181a90e3c"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a445777acbbee2032d83a256181a90e3c">all_species</a> () const override</td></tr>
+<tr class="memdesc:a445777acbbee2032d83a256181a90e3c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a set of all unique species involved in the reaction.  <br /></td></tr>
+<tr class="separator:a445777acbbee2032d83a256181a90e3c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad85ca288289b25d482cbb8e3ff270028" id="r_ad85ca288289b25d482cbb8e3ff270028"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad85ca288289b25d482cbb8e3ff270028">reactant_species</a> () const override</td></tr>
+<tr class="memdesc:ad85ca288289b25d482cbb8e3ff270028"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a set of all unique reactant species.  <br /></td></tr>
+<tr class="separator:ad85ca288289b25d482cbb8e3ff270028"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a67c8fa4d5929c7a8cbca9b3d9dd2b704" id="r_a67c8fa4d5929c7a8cbca9b3d9dd2b704"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a67c8fa4d5929c7a8cbca9b3d9dd2b704">product_species</a> () const override</td></tr>
+<tr class="memdesc:a67c8fa4d5929c7a8cbca9b3d9dd2b704"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a set of all unique product species.  <br /></td></tr>
+<tr class="separator:a67c8fa4d5929c7a8cbca9b3d9dd2b704"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9205126955ad38f56e8aca3112bc150a" id="r_a9205126955ad38f56e8aca3112bc150a"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9205126955ad38f56e8aca3112bc150a">num_species</a> () const override</td></tr>
+<tr class="memdesc:a9205126955ad38f56e8aca3112bc150a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the number of unique species involved in the reaction.  <br /></td></tr>
+<tr class="separator:a9205126955ad38f56e8aca3112bc150a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a57b2695d152360a6ba08776cc760e3a1" id="r_a57b2695d152360a6ba08776cc760e3a1"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a57b2695d152360a6ba08776cc760e3a1">stoichiometry</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a57b2695d152360a6ba08776cc760e3a1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the stoichiometric coefficient for a given species.  <br /></td></tr>
+<tr class="separator:a57b2695d152360a6ba08776cc760e3a1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0f629cbfe95dc5643b5e3724be0db2f9" id="r_a0f629cbfe95dc5643b5e3724be0db2f9"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, int &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0f629cbfe95dc5643b5e3724be0db2f9">stoichiometry</a> () const override</td></tr>
+<tr class="memdesc:a0f629cbfe95dc5643b5e3724be0db2f9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a map of all species to their stoichiometric coefficients.  <br /></td></tr>
+<tr class="separator:a0f629cbfe95dc5643b5e3724be0db2f9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a06312f834439ccf93012dea53cab47ce" id="r_a06312f834439ccf93012dea53cab47ce"><td class="memItemLeft" align="right" valign="top">std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a06312f834439ccf93012dea53cab47ce">id</a> () const override</td></tr>
+<tr class="memdesc:a06312f834439ccf93012dea53cab47ce"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the unique identifier of the reaction.  <br /></td></tr>
+<tr class="separator:a06312f834439ccf93012dea53cab47ce"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae47931948f12816eb890c0db4fff4d68" id="r_ae47931948f12816eb890c0db4fff4d68"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae47931948f12816eb890c0db4fff4d68">qValue</a> () const override</td></tr>
+<tr class="memdesc:ae47931948f12816eb890c0db4fff4d68"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the Q-value of the reaction.  <br /></td></tr>
+<tr class="separator:ae47931948f12816eb890c0db4fff4d68"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad095aba46860fec0e68386bf04f7f142" id="r_ad095aba46860fec0e68386bf04f7f142"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad095aba46860fec0e68386bf04f7f142">reactants</a> () const override</td></tr>
+<tr class="memdesc:ad095aba46860fec0e68386bf04f7f142"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the vector of reactant species.  <br /></td></tr>
+<tr class="separator:ad095aba46860fec0e68386bf04f7f142"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5f563b99bb550d5bafa2a989502de019" id="r_a5f563b99bb550d5bafa2a989502de019"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5f563b99bb550d5bafa2a989502de019">products</a> () const override</td></tr>
+<tr class="memdesc:a5f563b99bb550d5bafa2a989502de019"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the vector of product species.  <br /></td></tr>
+<tr class="separator:a5f563b99bb550d5bafa2a989502de019"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a181b2c75af1f2701c43594c5bb2bac2d" id="r_a181b2c75af1f2701c43594c5bb2bac2d"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a181b2c75af1f2701c43594c5bb2bac2d">is_reverse</a> () const override</td></tr>
+<tr class="memdesc:a181b2c75af1f2701c43594c5bb2bac2d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if this is a reverse reaction rate.  <br /></td></tr>
+<tr class="separator:a181b2c75af1f2701c43594c5bb2bac2d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0b30c49925823c87980b4fca17c8282e" id="r_a0b30c49925823c87980b4fca17c8282e"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0b30c49925823c87980b4fca17c8282e">excess_energy</a> () const</td></tr>
+<tr class="memdesc:a0b30c49925823c87980b4fca17c8282e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the excess energy from the mass difference of reactants and products.  <br /></td></tr>
+<tr class="separator:a0b30c49925823c87980b4fca17c8282e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae7c930525db447e39b4de18fbc1251a8" id="r_ae7c930525db447e39b4de18fbc1251a8"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae7c930525db447e39b4de18fbc1251a8">operator==</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a> &amp;other) const</td></tr>
+<tr class="memdesc:ae7c930525db447e39b4de18fbc1251a8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compares this reaction with another for equality based on their IDs.  <br /></td></tr>
+<tr class="separator:ae7c930525db447e39b4de18fbc1251a8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8b6008e0f629329bfc62256f4f081b77" id="r_a8b6008e0f629329bfc62256f4f081b77"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8b6008e0f629329bfc62256f4f081b77">operator!=</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a> &amp;other) const</td></tr>
+<tr class="memdesc:a8b6008e0f629329bfc62256f4f081b77"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compares this reaction with another for inequality.  <br /></td></tr>
+<tr class="separator:a8b6008e0f629329bfc62256f4f081b77"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a661dd461e51c37133f7f9931389fd3cc" id="r_a661dd461e51c37133f7f9931389fd3cc"><td class="memItemLeft" align="right" valign="top">uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a661dd461e51c37133f7f9931389fd3cc">hash</a> (uint64_t seed) const override</td></tr>
+<tr class="memdesc:a661dd461e51c37133f7f9931389fd3cc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes a hash for the reaction based on its ID.  <br /></td></tr>
+<tr class="separator:a661dd461e51c37133f7f9931389fd3cc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a54fde02e7010e806136f976ab64b1740" id="r_a54fde02e7010e806136f976ab64b1740"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a54fde02e7010e806136f976ab64b1740">clone</a> () const override</td></tr>
+<tr class="memdesc:a54fde02e7010e806136f976ab64b1740"><td class="mdescLeft">&#160;</td><td class="mdescRight">Polymorphic deep copy.  <br /></td></tr>
+<tr class="separator:a54fde02e7010e806136f976ab64b1740"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1reaction_1_1_reaction"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1reaction_1_1_reaction')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td></tr>
+<tr class="memitem:ab1860df84843be70f97469761e11ab6a inherit pub_methods_classgridfire_1_1reaction_1_1_reaction" id="r_ab1860df84843be70f97469761e11ab6a"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a> ()=default</td></tr>
+<tr class="memdesc:ab1860df84843be70f97469761e11ab6a inherit pub_methods_classgridfire_1_1reaction_1_1_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for correct polymorphic cleanup.  <br /></td></tr>
+<tr class="separator:ab1860df84843be70f97469761e11ab6a inherit pub_methods_classgridfire_1_1reaction_1_1_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae66b446c98add7e00a1d960f4e7c60dd inherit pub_methods_classgridfire_1_1reaction_1_1_reaction" id="r_ae66b446c98add7e00a1d960f4e7c60dd"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">calculate_energy_generation_rate</a> (const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td></tr>
+<tr class="memdesc:ae66b446c98add7e00a1d960f4e7c60dd inherit pub_methods_classgridfire_1_1reaction_1_1_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convenience: energy generation rate from this reaction (double version).  <br /></td></tr>
+<tr class="separator:ae66b446c98add7e00a1d960f4e7c60dd inherit pub_methods_classgridfire_1_1reaction_1_1_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4282f85c34d6db1994c07e7a40f66d80 inherit pub_methods_classgridfire_1_1reaction_1_1_reaction" id="r_a4282f85c34d6db1994c07e7a40f66d80"><td class="memItemLeft" align="right" valign="top">virtual CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80">calculate_energy_generation_rate</a> (const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td></tr>
+<tr class="memdesc:a4282f85c34d6db1994c07e7a40f66d80 inherit pub_methods_classgridfire_1_1reaction_1_1_reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convenience: AD-enabled energy generation rate (AD version).  <br /></td></tr>
+<tr class="separator:a4282f85c34d6db1994c07e7a40f66d80 inherit pub_methods_classgridfire_1_1reaction_1_1_reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pro-attribs" name="pro-attribs"></a>
+Protected Attributes</h2></td></tr>
+<tr class="memitem:abab0ed78925789856ebb119d60c6a53d" id="r_abab0ed78925789856ebb119d60c6a53d"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abab0ed78925789856ebb119d60c6a53d">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="separator:abab0ed78925789856ebb119d60c6a53d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8ca86e0f8f95ffb6d87ca295e44f14c5" id="r_a8ca86e0f8f95ffb6d87ca295e44f14c5"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8ca86e0f8f95ffb6d87ca295e44f14c5">m_id</a></td></tr>
+<tr class="memdesc:a8ca86e0f8f95ffb6d87ca295e44f14c5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Unique identifier for the reaction (e.g., "h1+h1=&gt;h2+e+nu").  <br /></td></tr>
+<tr class="separator:a8ca86e0f8f95ffb6d87ca295e44f14c5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a51f658789f34f96e0e6bd42cef5cbfe4" id="r_a51f658789f34f96e0e6bd42cef5cbfe4"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a51f658789f34f96e0e6bd42cef5cbfe4">m_peName</a></td></tr>
+<tr class="memdesc:a51f658789f34f96e0e6bd42cef5cbfe4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name of the reaction in (projectile, ejectile) notation (e.g. "p(p,g)d").  <br /></td></tr>
+<tr class="separator:a51f658789f34f96e0e6bd42cef5cbfe4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adbcb383bac0f47c66251ee1b7c5f539d" id="r_adbcb383bac0f47c66251ee1b7c5f539d"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#adbcb383bac0f47c66251ee1b7c5f539d">m_chapter</a></td></tr>
+<tr class="memdesc:adbcb383bac0f47c66251ee1b7c5f539d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Chapter number from the REACLIB database, defining the reaction structure.  <br /></td></tr>
+<tr class="separator:adbcb383bac0f47c66251ee1b7c5f539d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a498c202a259cbc315997ec68a2cb8a59" id="r_a498c202a259cbc315997ec68a2cb8a59"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a498c202a259cbc315997ec68a2cb8a59">m_qValue</a> = 0.0</td></tr>
+<tr class="memdesc:a498c202a259cbc315997ec68a2cb8a59"><td class="mdescLeft">&#160;</td><td class="mdescRight">Q-value of the reaction in MeV.  <br /></td></tr>
+<tr class="separator:a498c202a259cbc315997ec68a2cb8a59"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7cf403bc519ce39a1af886432a653826" id="r_a7cf403bc519ce39a1af886432a653826"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7cf403bc519ce39a1af886432a653826">m_reactants</a></td></tr>
+<tr class="memdesc:a7cf403bc519ce39a1af886432a653826"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reactants of the reaction.  <br /></td></tr>
+<tr class="separator:a7cf403bc519ce39a1af886432a653826"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac350a26bdf19d7c1d20db55a226e6063" id="r_ac350a26bdf19d7c1d20db55a226e6063"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac350a26bdf19d7c1d20db55a226e6063">m_products</a></td></tr>
+<tr class="memdesc:ac350a26bdf19d7c1d20db55a226e6063"><td class="mdescLeft">&#160;</td><td class="mdescRight">Products of the reaction.  <br /></td></tr>
+<tr class="separator:ac350a26bdf19d7c1d20db55a226e6063"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7e79437a68947e176b8dd7dcbe27baab" id="r_a7e79437a68947e176b8dd7dcbe27baab"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7e79437a68947e176b8dd7dcbe27baab">m_sourceLabel</a></td></tr>
+<tr class="memdesc:a7e79437a68947e176b8dd7dcbe27baab"><td class="mdescLeft">&#160;</td><td class="mdescRight">Source label for the rate data (e.g., "wc12w", "st08").  <br /></td></tr>
+<tr class="separator:a7e79437a68947e176b8dd7dcbe27baab"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8ea3de0412395b7b617c4b71cbc2ab68" id="r_a8ea3de0412395b7b617c4b71cbc2ab68"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8ea3de0412395b7b617c4b71cbc2ab68">m_rateCoefficients</a></td></tr>
+<tr class="memdesc:a8ea3de0412395b7b617c4b71cbc2ab68"><td class="mdescLeft">&#160;</td><td class="mdescRight">The seven rate coefficients.  <br /></td></tr>
+<tr class="separator:a8ea3de0412395b7b617c4b71cbc2ab68"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af52b42d940f6a09dba5d28898d2b0b1f" id="r_af52b42d940f6a09dba5d28898d2b0b1f"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af52b42d940f6a09dba5d28898d2b0b1f">m_reverse</a> = false</td></tr>
+<tr class="memdesc:af52b42d940f6a09dba5d28898d2b0b1f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Flag indicating if this is a reverse reaction rate.  <br /></td></tr>
+<tr class="separator:af52b42d940f6a09dba5d28898d2b0b1f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:aeb177f9cf69e4f97c4518a27e6480523" id="r_aeb177f9cf69e4f97c4518a27e6480523"><td class="memTemplParams" colspan="2">template&lt;typename T&gt; </td></tr>
+<tr class="memitem:aeb177f9cf69e4f97c4518a27e6480523"><td class="memTemplItemLeft" align="right" valign="top">T&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#aeb177f9cf69e4f97c4518a27e6480523">calculate_rate</a> (const T T9) const</td></tr>
+<tr class="memdesc:aeb177f9cf69e4f97c4518a27e6480523"><td class="mdescLeft">&#160;</td><td class="mdescRight">Template implementation for calculating the reaction rate.  <br /></td></tr>
+<tr class="separator:aeb177f9cf69e4f97c4518a27e6480523"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="friends" name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:ae24ad1e38daab536aec6ac72c67e8615" id="r_ae24ad1e38daab536aec6ac72c67e8615"><td class="memItemLeft" align="right" valign="top">std::ostream &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae24ad1e38daab536aec6ac72c67e8615">operator&lt;&lt;</a> (std::ostream &amp;os, const <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a> &amp;r)</td></tr>
+<tr class="separator:ae24ad1e38daab536aec6ac72c67e8615"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="ae2b9b41a598c5f0dcd050b32985ea44e" name="ae2b9b41a598c5f0dcd050b32985ea44e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae2b9b41a598c5f0dcd050b32985ea44e">&#9670;&#160;</a></span>~ReaclibReaction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::ReaclibReaction::~ReaclibReaction </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel default">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a264112a230817a6080c770686e5bcc01" name="a264112a230817a6080c770686e5bcc01"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a264112a230817a6080c770686e5bcc01">&#9670;&#160;</a></span>ReaclibReaction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::ReaclibReaction::ReaclibReaction </td>
+          <td>(</td>
+          <td class="paramtype">std::string_view</td>          <td class="paramname"><span class="paramname"><em>id</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::string_view</td>          <td class="paramname"><span class="paramname"><em>peName</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int</td>          <td class="paramname"><span class="paramname"><em>chapter</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>reactants</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>products</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>qValue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::string_view</td>          <td class="paramname"><span class="paramname"><em>label</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>sets</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool</td>          <td class="paramname"><span class="paramname"><em>reverse</em></span><span class="paramdefsep"> = </span><span class="paramdefval">false</span>&#160;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Constructs a <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> object. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">id</td><td>A unique identifier for the reaction. </td></tr>
+    <tr><td class="paramname">peName</td><td>The name in (projectile, ejectile) notation (e.g., "p(p,g)d"). </td></tr>
+    <tr><td class="paramname">chapter</td><td>The REACLIB chapter number, defining reaction structure. </td></tr>
+    <tr><td class="paramname">reactants</td><td>A vector of reactant species. </td></tr>
+    <tr><td class="paramname">products</td><td>A vector of product species. </td></tr>
+    <tr><td class="paramname">qValue</td><td>The Q-value of the reaction in MeV. </td></tr>
+    <tr><td class="paramname">label</td><td>The source label for the rate data (e.g., "wc12", "st08"). </td></tr>
+    <tr><td class="paramname">sets</td><td>The set of rate coefficients. </td></tr>
+    <tr><td class="paramname">reverse</td><td>True if this is a reverse reaction rate. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a445777acbbee2032d83a256181a90e3c" name="a445777acbbee2032d83a256181a90e3c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a445777acbbee2032d83a256181a90e3c">&#9670;&#160;</a></span>all_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_set&lt; Species &gt; gridfire::reaction::ReaclibReaction::all_species </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets a set of all unique species involved in the reaction. </p>
+<dl class="section return"><dt>Returns</dt><dd>An unordered_set of all reactant and product species. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa13cd9097229fcc99128d9286b8f17e6">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="ada6ec1ae05b9a92b58e6a4ecdf5a1656" name="ada6ec1ae05b9a92b58e6a4ecdf5a1656"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ada6ec1ae05b9a92b58e6a4ecdf5a1656">&#9670;&#160;</a></span>calculate_log_rate_partial_deriv_wrt_T9()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::reaction::ReaclibReaction::calculate_log_rate_partial_deriv_wrt_T9 </td>
+          <td>(</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logarithmic partial derivative of the rate with respect to temperature. </p>
+<p>Implementations return d(ln rate)/d(ln T9) or an equivalent measure (as documented by the concrete class), evaluated at the provided state.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK (10^9 K). </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density (g cm^-3). </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object providing composition in a convenient form. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The logarithmic temperature derivative of the rate. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa2b615e764bb005e526ca9327319c735">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="aeb177f9cf69e4f97c4518a27e6480523" name="aeb177f9cf69e4f97c4518a27e6480523"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aeb177f9cf69e4f97c4518a27e6480523">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[1/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">T gridfire::reaction::ReaclibReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">const T</td>          <td class="paramname"><span class="paramname"><em>T9</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Template implementation for calculating the reaction rate. </p>
+<dl class="tparams"><dt>Template Parameters</dt><dd>
+  <table class="tparams">
+    <tr><td class="paramname">T</td><td>The numeric type (double or CppAD::AD&lt;double&gt;). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The calculated reaction rate.</dd></dl>
+<p>The rate is calculated using the standard REACLIB formula: <code>rate = exp(a0 + a1/T9 + a2/T9^(1/3) + a3*T9^(1/3) + a4*T9 + a5*T9^(5/3) + a6*ln(T9))</code> </p>
+
+</div>
+</div>
+<a id="afec5ccf7a8fb1ba56c8cc852ce858c5e" name="afec5ccf7a8fb1ba56c8cc852ce858c5e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afec5ccf7a8fb1ba56c8cc852ce858c5e">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[2/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">CppAD::AD&lt; double &gt; gridfire::reaction::ReaclibReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>index_to_species_map</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the reaction rate for a given temperature using CppAD types. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K, as a CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density, as a CppAD::AD&lt;double&gt; [Not used in this implementation]. </td></tr>
+    <tr><td class="paramname">Ye</td><td></td></tr>
+    <tr><td class="paramname">mue</td><td></td></tr>
+    <tr><td class="paramname">Y</td><td>Molar abundances of species, as a vector of CppAD::AD&lt;double&gt; [Not used in this implementation]. </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td></td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The calculated reaction rate, as a CppAD::AD&lt;double&gt;. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#af8303d67df61fc9e31ce054f0e8a3e14">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="acd16b1daf13456b3523362a37b1bf9b0" name="acd16b1daf13456b3523362a37b1bf9b0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acd16b1daf13456b3523362a37b1bf9b0">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[3/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::reaction::ReaclibReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>index_to_species_map</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the reaction rate for a given temperature. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density [Not used in this implementation]. </td></tr>
+    <tr><td class="paramname">Ye</td><td></td></tr>
+    <tr><td class="paramname">mue</td><td></td></tr>
+    <tr><td class="paramname">Y</td><td></td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td></td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The calculated reaction rate. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a83c121480533593adfd68c4a67a649f1">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="abe189c43e4d509d9d05dd205861ceddc" name="abe189c43e4d509d9d05dd205861ceddc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abe189c43e4d509d9d05dd205861ceddc">&#9670;&#160;</a></span>chapter()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::reaction::ReaclibReaction::chapter </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the REACLIB chapter number. </p>
+<dl class="section return"><dt>Returns</dt><dd>The chapter number. </dd></dl>
+
+</div>
+</div>
+<a id="a54fde02e7010e806136f976ab64b1740" name="a54fde02e7010e806136f976ab64b1740"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a54fde02e7010e806136f976ab64b1740">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt; gridfire::reaction::ReaclibReaction::clone </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Polymorphic deep copy. </p>
+<dl class="section return"><dt>Returns</dt><dd>A std::unique_ptr owning a new <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> equal to this one. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab95ce7fb022a9432bdc77f14679221ee">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a171b690e1abaf23f11a94c39e9f8c944" name="a171b690e1abaf23f11a94c39e9f8c944"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a171b690e1abaf23f11a94c39e9f8c944">&#9670;&#160;</a></span>contains()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReaclibReaction::contains </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if the reaction involves a given species as a reactant or product. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the species is involved, false otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a768db057d358240d4825c21869af0792">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a4e4811436d09afaa4a14c51d9af71f88" name="a4e4811436d09afaa4a14c51d9af71f88"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4e4811436d09afaa4a14c51d9af71f88">&#9670;&#160;</a></span>contains_product()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReaclibReaction::contains_product </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if the reaction involves a given species as a product. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the species is a product, false otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a2708d2e8f42159df6605a5948b13c4c5">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a65a12e5f6180873866cfaaf130fd1156" name="a65a12e5f6180873866cfaaf130fd1156"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a65a12e5f6180873866cfaaf130fd1156">&#9670;&#160;</a></span>contains_reactant()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReaclibReaction::contains_reactant </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if the reaction involves a given species as a reactant. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the species is a reactant, false otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab28bf4f9417ecabcc8350bae449fedd5">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a0b30c49925823c87980b4fca17c8282e" name="a0b30c49925823c87980b4fca17c8282e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0b30c49925823c87980b4fca17c8282e">&#9670;&#160;</a></span>excess_energy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::reaction::ReaclibReaction::excess_energy </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the excess energy from the mass difference of reactants and products. </p>
+<dl class="section return"><dt>Returns</dt><dd>The excess energy in MeV. </dd></dl>
+
+</div>
+</div>
+<a id="a661dd461e51c37133f7f9931389fd3cc" name="a661dd461e51c37133f7f9931389fd3cc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a661dd461e51c37133f7f9931389fd3cc">&#9670;&#160;</a></span>hash()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">uint64_t gridfire::reaction::ReaclibReaction::hash </td>
+          <td>(</td>
+          <td class="paramtype">uint64_t</td>          <td class="paramname"><span class="paramname"><em>seed</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Computes a hash for the reaction based on its ID. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">seed</td><td>The seed for the hash function. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A 64-bit hash value.</dd></dl>
+<p>Uses the XXHash64 algorithm on the reaction's ID string. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7ba8c18cd5445aa3499a6fd351183f7a">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a06312f834439ccf93012dea53cab47ce" name="a06312f834439ccf93012dea53cab47ce"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a06312f834439ccf93012dea53cab47ce">&#9670;&#160;</a></span>id()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string_view gridfire::reaction::ReaclibReaction::id </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the unique identifier of the reaction. </p>
+<dl class="section return"><dt>Returns</dt><dd>The reaction ID. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a94b92308b9619ec20c690e55157786ba">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a181b2c75af1f2701c43594c5bb2bac2d" name="a181b2c75af1f2701c43594c5bb2bac2d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a181b2c75af1f2701c43594c5bb2bac2d">&#9670;&#160;</a></span>is_reverse()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReaclibReaction::is_reverse </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if this is a reverse reaction rate. </p>
+<dl class="section return"><dt>Returns</dt><dd>True if it is a reverse rate, false otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a3906a668410e02239f9031b5fc580214">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a9205126955ad38f56e8aca3112bc150a" name="a9205126955ad38f56e8aca3112bc150a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9205126955ad38f56e8aca3112bc150a">&#9670;&#160;</a></span>num_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::reaction::ReaclibReaction::num_species </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the number of unique species involved in the reaction. </p>
+<dl class="section return"><dt>Returns</dt><dd>The count of unique species. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ae2a1b0395ac127c792a8049cd0bcc249">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a8b6008e0f629329bfc62256f4f081b77" name="a8b6008e0f629329bfc62256f4f081b77"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8b6008e0f629329bfc62256f4f081b77">&#9670;&#160;</a></span>operator!=()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReaclibReaction::operator!= </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>other</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Compares this reaction with another for inequality. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> to compare with. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the reactions are not equal. </dd></dl>
+
+</div>
+</div>
+<a id="ae7c930525db447e39b4de18fbc1251a8" name="ae7c930525db447e39b4de18fbc1251a8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae7c930525db447e39b4de18fbc1251a8">&#9670;&#160;</a></span>operator==()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReaclibReaction::operator== </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>other</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Compares this reaction with another for equality based on their IDs. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> to compare with. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the reaction IDs are the same. </dd></dl>
+
+</div>
+</div>
+<a id="af775f97f4d5e144e33bc6e0ba58a5851" name="af775f97f4d5e144e33bc6e0ba58a5851"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af775f97f4d5e144e33bc6e0ba58a5851">&#9670;&#160;</a></span>peName()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::string_view gridfire::reaction::ReaclibReaction::peName </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the reaction name in (projectile, ejectile) notation. </p>
+<dl class="section return"><dt>Returns</dt><dd>The reaction name (e.g., "p(p,g)d"). </dd></dl>
+
+</div>
+</div>
+<a id="a67c8fa4d5929c7a8cbca9b3d9dd2b704" name="a67c8fa4d5929c7a8cbca9b3d9dd2b704"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a67c8fa4d5929c7a8cbca9b3d9dd2b704">&#9670;&#160;</a></span>product_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_set&lt; Species &gt; gridfire::reaction::ReaclibReaction::product_species </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets a set of all unique product species. </p>
+<dl class="section return"><dt>Returns</dt><dd>An unordered_set of product species. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0d16572ae2b664374d32ee6c4e22123a">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a5f563b99bb550d5bafa2a989502de019" name="a5f563b99bb550d5bafa2a989502de019"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5f563b99bb550d5bafa2a989502de019">&#9670;&#160;</a></span>products()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::reaction::ReaclibReaction::products </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the vector of product species. </p>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the vector of products. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a3d7451045d8df41ea98b5e419e0e5ab0">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="ae47931948f12816eb890c0db4fff4d68" name="ae47931948f12816eb890c0db4fff4d68"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae47931948f12816eb890c0db4fff4d68">&#9670;&#160;</a></span>qValue()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::reaction::ReaclibReaction::qValue </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the Q-value of the reaction. </p>
+<dl class="section return"><dt>Returns</dt><dd>The Q-value in whatever units the reaction was defined in (usually MeV). </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="adfed51cf788a7ed4770cbd5945ddab2f" name="adfed51cf788a7ed4770cbd5945ddab2f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adfed51cf788a7ed4770cbd5945ddab2f">&#9670;&#160;</a></span>rateCoefficients()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> &amp; gridfire::reaction::ReaclibReaction::rateCoefficients </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the set of rate coefficients. </p>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html" title="Holds the seven coefficients for the REACLIB rate equation.">RateCoefficientSet</a>. </dd></dl>
+
+</div>
+</div>
+<a id="ad85ca288289b25d482cbb8e3ff270028" name="ad85ca288289b25d482cbb8e3ff270028"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad85ca288289b25d482cbb8e3ff270028">&#9670;&#160;</a></span>reactant_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_set&lt; Species &gt; gridfire::reaction::ReaclibReaction::reactant_species </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets a set of all unique reactant species. </p>
+<dl class="section return"><dt>Returns</dt><dd>An unordered_set of reactant species. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a82c14096308cdc9126ab6d9667febcd2">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="ad095aba46860fec0e68386bf04f7f142" name="ad095aba46860fec0e68386bf04f7f142"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad095aba46860fec0e68386bf04f7f142">&#9670;&#160;</a></span>reactants()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::reaction::ReaclibReaction::reactants </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the vector of reactant species. </p>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the vector of reactants. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ac7b08c61cdc97268b9442afec4d08dad">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a96d4ab87de02e9b0be3c248e2e955b4b" name="a96d4ab87de02e9b0be3c248e2e955b4b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a96d4ab87de02e9b0be3c248e2e955b4b">&#9670;&#160;</a></span>sourceLabel()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string_view gridfire::reaction::ReaclibReaction::sourceLabel </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the source label for the rate data. </p>
+<dl class="section return"><dt>Returns</dt><dd>The source label (e.g., "wc12w", "st08"). </dd></dl>
+
+</div>
+</div>
+<a id="a0f629cbfe95dc5643b5e3724be0db2f9" name="a0f629cbfe95dc5643b5e3724be0db2f9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0f629cbfe95dc5643b5e3724be0db2f9">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt; Species, int &gt; gridfire::reaction::ReaclibReaction::stoichiometry </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets a map of all species to their stoichiometric coefficients. </p>
+<dl class="section return"><dt>Returns</dt><dd>An unordered_map from species to their integer coefficients. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ad49f4cad024db72c966d949c75f1ce4d">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a57b2695d152360a6ba08776cc760e3a1" name="a57b2695d152360a6ba08776cc760e3a1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a57b2695d152360a6ba08776cc760e3a1">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::reaction::ReaclibReaction::stoichiometry </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the stoichiometric coefficient for a given species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species for which to find the coefficient. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The stoichiometric coefficient (negative for reactants, positive for products). </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab7888b57507d6d27de6e5fcaea40fff5">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a3c0fbdd07f9a837bd031c5bdc58e0e8f" name="a3c0fbdd07f9a837bd031c5bdc58e0e8f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3c0fbdd07f9a837bd031c5bdc58e0e8f">&#9670;&#160;</a></span>type()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a> gridfire::reaction::ReaclibReaction::type </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Category of this reaction (e.g., REACLIB, WEAK, LOGICAL_REACLIB). </p>
+<dl class="section return"><dt>Returns</dt><dd>Enumerated reaction type for runtime dispatch and filtering. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Friends And Related Symbol Documentation</h2>
+<a id="ae24ad1e38daab536aec6ac72c67e8615" name="ae24ad1e38daab536aec6ac72c67e8615"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae24ad1e38daab536aec6ac72c67e8615">&#9670;&#160;</a></span>operator&lt;&lt;</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::ostream &amp; operator&lt;&lt; </td>
+          <td>(</td>
+          <td class="paramtype">std::ostream &amp;</td>          <td class="paramname"><span class="paramname"><em>os</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>r</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel friend">friend</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="adbcb383bac0f47c66251ee1b7c5f539d" name="adbcb383bac0f47c66251ee1b7c5f539d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adbcb383bac0f47c66251ee1b7c5f539d">&#9670;&#160;</a></span>m_chapter</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::reaction::ReaclibReaction::m_chapter</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Chapter number from the REACLIB database, defining the reaction structure. </p>
+
+</div>
+</div>
+<a id="a8ca86e0f8f95ffb6d87ca295e44f14c5" name="a8ca86e0f8f95ffb6d87ca295e44f14c5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8ca86e0f8f95ffb6d87ca295e44f14c5">&#9670;&#160;</a></span>m_id</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::reaction::ReaclibReaction::m_id</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Unique identifier for the reaction (e.g., "h1+h1=&gt;h2+e+nu"). </p>
+
+</div>
+</div>
+<a id="abab0ed78925789856ebb119d60c6a53d" name="abab0ed78925789856ebb119d60c6a53d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abab0ed78925789856ebb119d60c6a53d">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::reaction::ReaclibReaction::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a51f658789f34f96e0e6bd42cef5cbfe4" name="a51f658789f34f96e0e6bd42cef5cbfe4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a51f658789f34f96e0e6bd42cef5cbfe4">&#9670;&#160;</a></span>m_peName</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::reaction::ReaclibReaction::m_peName</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Name of the reaction in (projectile, ejectile) notation (e.g. "p(p,g)d"). </p>
+
+</div>
+</div>
+<a id="ac350a26bdf19d7c1d20db55a226e6063" name="ac350a26bdf19d7c1d20db55a226e6063"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac350a26bdf19d7c1d20db55a226e6063">&#9670;&#160;</a></span>m_products</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;fourdst::atomic::Species&gt; gridfire::reaction::ReaclibReaction::m_products</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Products of the reaction. </p>
+
+</div>
+</div>
+<a id="a498c202a259cbc315997ec68a2cb8a59" name="a498c202a259cbc315997ec68a2cb8a59"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a498c202a259cbc315997ec68a2cb8a59">&#9670;&#160;</a></span>m_qValue</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::reaction::ReaclibReaction::m_qValue = 0.0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Q-value of the reaction in MeV. </p>
+
+</div>
+</div>
+<a id="a8ea3de0412395b7b617c4b71cbc2ab68" name="a8ea3de0412395b7b617c4b71cbc2ab68"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8ea3de0412395b7b617c4b71cbc2ab68">&#9670;&#160;</a></span>m_rateCoefficients</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> gridfire::reaction::ReaclibReaction::m_rateCoefficients</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>The seven rate coefficients. </p>
+
+</div>
+</div>
+<a id="a7cf403bc519ce39a1af886432a653826" name="a7cf403bc519ce39a1af886432a653826"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7cf403bc519ce39a1af886432a653826">&#9670;&#160;</a></span>m_reactants</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;fourdst::atomic::Species&gt; gridfire::reaction::ReaclibReaction::m_reactants</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reactants of the reaction. </p>
+
+</div>
+</div>
+<a id="af52b42d940f6a09dba5d28898d2b0b1f" name="af52b42d940f6a09dba5d28898d2b0b1f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af52b42d940f6a09dba5d28898d2b0b1f">&#9670;&#160;</a></span>m_reverse</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReaclibReaction::m_reverse = false</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Flag indicating if this is a reverse reaction rate. </p>
+
+</div>
+</div>
+<a id="a7e79437a68947e176b8dd7dcbe27baab" name="a7e79437a68947e176b8dd7dcbe27baab"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7e79437a68947e176b8dd7dcbe27baab">&#9670;&#160;</a></span>m_sourceLabel</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::reaction::ReaclibReaction::m_sourceLabel</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Source label for the rate data (e.g., "wc12w", "st08"). </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/reaction/<a class="el" href="reaction_8h.html">reaction.h</a></li>
+<li>src/lib/reaction/<a class="el" href="reaction_8cpp.html">reaction.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1reaction.html">reaction</a></li><li class="navelem"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction.js b/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction.js
new file mode 100644
index 00000000..d89c15f7
--- /dev/null
+++ b/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction.js
@@ -0,0 +1,44 @@
+var classgridfire_1_1reaction_1_1_reaclib_reaction =
+[
+    [ "~ReaclibReaction", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae2b9b41a598c5f0dcd050b32985ea44e", null ],
+    [ "ReaclibReaction", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a264112a230817a6080c770686e5bcc01", null ],
+    [ "all_species", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a445777acbbee2032d83a256181a90e3c", null ],
+    [ "calculate_log_rate_partial_deriv_wrt_T9", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656", null ],
+    [ "calculate_rate", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#aeb177f9cf69e4f97c4518a27e6480523", null ],
+    [ "calculate_rate", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#afec5ccf7a8fb1ba56c8cc852ce858c5e", null ],
+    [ "calculate_rate", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#acd16b1daf13456b3523362a37b1bf9b0", null ],
+    [ "chapter", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#abe189c43e4d509d9d05dd205861ceddc", null ],
+    [ "clone", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a54fde02e7010e806136f976ab64b1740", null ],
+    [ "contains", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a171b690e1abaf23f11a94c39e9f8c944", null ],
+    [ "contains_product", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a4e4811436d09afaa4a14c51d9af71f88", null ],
+    [ "contains_reactant", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a65a12e5f6180873866cfaaf130fd1156", null ],
+    [ "excess_energy", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0b30c49925823c87980b4fca17c8282e", null ],
+    [ "hash", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a661dd461e51c37133f7f9931389fd3cc", null ],
+    [ "id", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a06312f834439ccf93012dea53cab47ce", null ],
+    [ "is_reverse", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a181b2c75af1f2701c43594c5bb2bac2d", null ],
+    [ "num_species", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a9205126955ad38f56e8aca3112bc150a", null ],
+    [ "operator!=", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8b6008e0f629329bfc62256f4f081b77", null ],
+    [ "operator==", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae7c930525db447e39b4de18fbc1251a8", null ],
+    [ "peName", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#af775f97f4d5e144e33bc6e0ba58a5851", null ],
+    [ "product_species", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a67c8fa4d5929c7a8cbca9b3d9dd2b704", null ],
+    [ "products", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a5f563b99bb550d5bafa2a989502de019", null ],
+    [ "qValue", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae47931948f12816eb890c0db4fff4d68", null ],
+    [ "rateCoefficients", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#adfed51cf788a7ed4770cbd5945ddab2f", null ],
+    [ "reactant_species", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad85ca288289b25d482cbb8e3ff270028", null ],
+    [ "reactants", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad095aba46860fec0e68386bf04f7f142", null ],
+    [ "sourceLabel", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a96d4ab87de02e9b0be3c248e2e955b4b", null ],
+    [ "stoichiometry", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0f629cbfe95dc5643b5e3724be0db2f9", null ],
+    [ "stoichiometry", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a57b2695d152360a6ba08776cc760e3a1", null ],
+    [ "type", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a3c0fbdd07f9a837bd031c5bdc58e0e8f", null ],
+    [ "operator<<", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae24ad1e38daab536aec6ac72c67e8615", null ],
+    [ "m_chapter", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#adbcb383bac0f47c66251ee1b7c5f539d", null ],
+    [ "m_id", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ca86e0f8f95ffb6d87ca295e44f14c5", null ],
+    [ "m_logger", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#abab0ed78925789856ebb119d60c6a53d", null ],
+    [ "m_peName", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a51f658789f34f96e0e6bd42cef5cbfe4", null ],
+    [ "m_products", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#ac350a26bdf19d7c1d20db55a226e6063", null ],
+    [ "m_qValue", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a498c202a259cbc315997ec68a2cb8a59", null ],
+    [ "m_rateCoefficients", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ea3de0412395b7b617c4b71cbc2ab68", null ],
+    [ "m_reactants", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7cf403bc519ce39a1af886432a653826", null ],
+    [ "m_reverse", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#af52b42d940f6a09dba5d28898d2b0b1f", null ],
+    [ "m_sourceLabel", "classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7e79437a68947e176b8dd7dcbe27baab", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction.png b/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction.png
new file mode 100644
index 0000000000000000000000000000000000000000..bc45e391282a5b9d936b6fcea87ef0f8bc7ccda4
GIT binary patch
literal 1181
zcmeAS@N?(olHy`uVBq!ia0vp^pMki8gBeJ&p4H_CQqloFA+G=b{|7Q(y!l$%e`vXd
zfo6fk^fNCWJa_;UH$5A+1SrQ@666=m0OW&#In(Sb3=Aw9o-U3d6^w7^MoxOIz~ibv
zebtn2`yYw(^L*-f`|iosfN;N#jVTtqC-!$39y{lta&lck`lK!W){~di&a-U4)G}e6
z$EMcuAAW8U|2&Gi|C&t7dFX!a=RK2e!N;ttx65<gFP;}(^5Y!0%{uQ_bJv}c@%F#V
z6CeC<PI%F#&s#yNcYU^a_ryxS;A80i%lcOr&wiye;cL3}yvC=&{JxXU-YHslu{TL}
z{kg_@HFGDQ`+O9nC45dO=c?*u&+hz;lk(j5A^P>6zU!LH&slx={W>Op&(lh~TescW
zi_iab0?97PyRM)1be8|)Me3q=w<L!$syTm+y!!Sq(4gn{e*gSwJxOK%(Z8R4Ce=@l
zuKt~`egDpFm7nE>Fi+k)XL#&}IKv0oIED+7vR3=!{(6?b_!IWdZ<l-e`r8Z_nBVa*
zd@D?6*wAmy+)#T*lHtwca|{Xc<!lVUcNjC=I6jy0fE~ILJ2wu+61JuekMJFvJ34Cb
zM7kWYJA1D9#sy$#y0}DDw7*a3DGhN+>DJWkt&!7Ix^&=b>Ao)?p4$7kq#UeBfB)@D
z{NL^VO0F(a7G==T{kJ{%eMzXBo^7ddjqlImxRWQ<q%$k$UOt-l<RF8R5;x!6<I8>5
zW&U}yx^8*=DtGg%t^zCVZ+{H+s9qxF;F2=g__@?wjcXrY$-L0KYWZ@C*^;g9^K!l|
zKeuYb72DwAcQux8AAyXiOPG88qt(+Zk?e9yx4PREuG@b3la2h_w~HTdd;TZ+`OnVc
zmAAikNAA4Fy6v6kQj@pNp<%90Un4^wPbv%B&d)9&c=O4Zzcr6@b(B8YUoM&F>cUgF
zZ9A{l{P($ng2{-$$bT;2^n#n=2cJH}iypqY@$3IBu`a38E?2+1c=PpKh8K)@gBN=Y
z$SWU{*ndbHNH8gRmbHQs@ST||Z#Tb`@e+30rF2s4-a~82*>_i;Q>_1?d{TGW^W~cJ
z+$Sx0mNEBxy8oo=H_Nx!>h$gsxBVJ^x=6@#(yT`|>tB4BD_-$Oec8R2t86xWxpMY{
z>C^L-s_K7FJv`}eyR7V9MP1zUl8w?kttY>+Ve>Wi>_5BjRr$R1yO2b#?q66~K6QWX
z;;OLfC9_Um+UaKARl3KDJzDOy(Z-;Vlb<znE9$CKI(Ix;^UC$Ev1$L@&&ku2=h^?i
z<fFH4vz|b9r~0|u)xZDzd^=J4+*iHGdCwQ`tu5)|n`>V+&wP&e-F5M2PK92*nmY4L
zXicE*Rh!Rjch=tCnP0njYo7eMl&^LBKANeW{9RLX;4Lum%RhX~yl(F0cM2!ZfB49F
u{hZ28_IEy$fC+ojmh-nQk4gM~BrkgD$GeN$dy;_#34^DrpUXO@geCx>vsdu|

literal 0
HcmV?d00001

diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaction-members.html b/docs/html/classgridfire_1_1reaction_1_1_reaction-members.html
index 0f98562a..57f8f692 100644
--- a/docs/html/classgridfire_1_1reaction_1_1_reaction-members.html
+++ b/docs/html/classgridfire_1_1reaction_1_1_reaction-members.html
@@ -105,45 +105,30 @@ $(function(){initNavTree('classgridfire_1_1reaction_1_1_reaction.html',''); init
 
 <p>This is the complete list of members for <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a>, including all inherited members.</p>
 <table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224">all_species</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061">calculate_forward_rate_log_derivative</a>(const double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec">calculate_rate</a>(const double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a735192a42f72cd68f289493753e1a616">calculate_rate</a>(const CppAD::AD&lt; double &gt; T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af">calculate_rate</a>(const T T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629">chapter</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b">contains</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2">contains_product</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45">contains_reactant</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5">excess_energy</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5">hash</a>(uint64_t seed=0) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905">id</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba">is_reverse</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b">m_chapter</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b">m_id</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248">m_peName</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e">m_products</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b">m_qValue</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72">m_rateCoefficients</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11">m_reactants</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9">m_reverse</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6">m_sourceLabel</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97">num_species</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51">operator!=</a>(const Reaction &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8">operator&lt;&lt;</a>(std::ostream &amp;os, const Reaction &amp;r)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ac426457cf0a54a15b206549422083bac">operator==</a>(const Reaction &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97">peName</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c">product_species</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02">products</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8">qValue</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e">rateCoefficients</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923">reactant_species</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b">reactants</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c">Reaction</a>(const std::string_view id, const std::string_view peName, const int chapter, const std::vector&lt; fourdst::atomic::Species &gt; &amp;reactants, const std::vector&lt; fourdst::atomic::Species &gt; &amp;products, const double qValue, const std::string_view label, const RateCoefficientSet &amp;sets, const bool reverse=false)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0">sourceLabel</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac">stoichiometry</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3">stoichiometry</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa13cd9097229fcc99128d9286b8f17e6">all_species</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">calculate_energy_generation_rate</a>(const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80">calculate_energy_generation_rate</a>(const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa2b615e764bb005e526ca9327319c735">calculate_log_rate_partial_deriv_wrt_T9</a>(double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;comp) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a83c121480533593adfd68c4a67a649f1">calculate_rate</a>(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#af8303d67df61fc9e31ce054f0e8a3e14">calculate_rate</a>(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab95ce7fb022a9432bdc77f14679221ee">clone</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a768db057d358240d4825c21869af0792">contains</a>(const fourdst::atomic::Species &amp;species) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a2708d2e8f42159df6605a5948b13c4c5">contains_product</a>(const fourdst::atomic::Species &amp;species) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab28bf4f9417ecabcc8350bae449fedd5">contains_reactant</a>(const fourdst::atomic::Species &amp;species) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7ba8c18cd5445aa3499a6fd351183f7a">hash</a>(uint64_t seed) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a94b92308b9619ec20c690e55157786ba">id</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a3906a668410e02239f9031b5fc580214">is_reverse</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ae2a1b0395ac127c792a8049cd0bcc249">num_species</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8">operator&lt;&lt;</a>(std::ostream &amp;os, const Reaction &amp;r)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0d16572ae2b664374d32ee6c4e22123a">product_species</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a3d7451045d8df41ea98b5e419e0e5ab0">products</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c">qValue</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a82c14096308cdc9126ab6d9667febcd2">reactant_species</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ac7b08c61cdc97268b9442afec4d08dad">reactants</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ad49f4cad024db72c966d949c75f1ce4d">stoichiometry</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab7888b57507d6d27de6e5fcaea40fff5">stoichiometry</a>(const fourdst::atomic::Species &amp;species) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7">type</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaction.html b/docs/html/classgridfire_1_1reaction_1_1_reaction.html
index 1d993543..86ef221d 100644
--- a/docs/html/classgridfire_1_1reaction_1_1_reaction.html
+++ b/docs/html/classgridfire_1_1reaction_1_1_reaction.html
@@ -101,11 +101,9 @@ $(function(){initNavTree('classgridfire_1_1reaction_1_1_reaction.html',''); init
 <div class="header">
   <div class="summary">
 <a href="#pub-methods">Public Member Functions</a> &#124;
-<a href="#pro-attribs">Protected Attributes</a> &#124;
-<a href="#pri-methods">Private Member Functions</a> &#124;
 <a href="#friends">Friends</a> &#124;
 <a href="classgridfire_1_1reaction_1_1_reaction-members.html">List of all members</a>  </div>
-  <div class="headertitle"><div class="title">gridfire::reaction::Reaction Class Reference</div></div>
+  <div class="headertitle"><div class="title">gridfire::reaction::Reaction Class Reference<span class="mlabels"><span class="mlabel abstract">abstract</span></span></div></div>
 </div><!--header-->
 <div class="contents">
 
@@ -119,131 +117,83 @@ Inheritance diagram for gridfire::reaction::Reaction:</div>
  <div class="center">
   <img src="classgridfire_1_1reaction_1_1_reaction.png" usemap="#gridfire::reaction::Reaction_map" alt=""/>
   <map id="gridfire::reaction::Reaction_map" name="gridfire::reaction::Reaction_map">
-<area href="classgridfire_1_1reaction_1_1_logical_reaction.html" title="Represents a &quot;logical&quot; reaction that aggregates rates from multiple sources." alt="gridfire::reaction::LogicalReaction" shape="rect" coords="0,56,201,80"/>
+<area href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html" title="Concrete Reaction representing a single weak process (beta±, e−/e+ capture)." alt="gridfire::rates::weak::WeakReaction" shape="rect" coords="0,56,243,80"/>
+<area href="classgridfire_1_1reaction_1_1_reaclib_reaction.html" alt="gridfire::reaction::ReaclibReaction" shape="rect" coords="253,56,496,80"/>
+<area href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html" title="Represents a &quot;logical&quot; reaction that aggregates rates from multiple sources." alt="gridfire::reaction::LogicalReaclibReaction" shape="rect" coords="253,112,496,136"/>
   </map>
 </div></div>
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
 Public Member Functions</h2></td></tr>
 <tr class="memitem:ab1860df84843be70f97469761e11ab6a" id="r_ab1860df84843be70f97469761e11ab6a"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab1860df84843be70f97469761e11ab6a">~Reaction</a> ()=default</td></tr>
-<tr class="memdesc:ab1860df84843be70f97469761e11ab6a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="memdesc:ab1860df84843be70f97469761e11ab6a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for correct polymorphic cleanup.  <br /></td></tr>
 <tr class="separator:ab1860df84843be70f97469761e11ab6a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7dff19d387e771d96c26e98d75ee9d5c" id="r_a7dff19d387e771d96c26e98d75ee9d5c"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7dff19d387e771d96c26e98d75ee9d5c">Reaction</a> (const std::string_view <a class="el" href="#a084c38181408ed5e6fa2a2dd4d0ec905">id</a>, const std::string_view <a class="el" href="#a78f42664cc957e266b6cf15fda09be97">peName</a>, const int <a class="el" href="#a5cb438adfefb640e4bc58e09053bd629">chapter</a>, const std::vector&lt; fourdst::atomic::Species &gt; &amp;<a class="el" href="#a0b543e9b0bb4a21efe4b29780d9bdf5b">reactants</a>, const std::vector&lt; fourdst::atomic::Species &gt; &amp;<a class="el" href="#a6e2ff61b9e8409f2a561663628b8ce02">products</a>, const double <a class="el" href="#abda0b4e4313e6d4ba57acf37d5976fb8">qValue</a>, const std::string_view label, const <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> &amp;sets, const bool reverse=false)</td></tr>
-<tr class="memdesc:a7dff19d387e771d96c26e98d75ee9d5c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> object.  <br /></td></tr>
-<tr class="separator:a7dff19d387e771d96c26e98d75ee9d5c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad81e9b2a1773470059ca6989c60556ec" id="r_ad81e9b2a1773470059ca6989c60556ec"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad81e9b2a1773470059ca6989c60556ec">calculate_rate</a> (const double T9) const</td></tr>
-<tr class="memdesc:ad81e9b2a1773470059ca6989c60556ec"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the reaction rate for a given temperature.  <br /></td></tr>
-<tr class="separator:ad81e9b2a1773470059ca6989c60556ec"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a735192a42f72cd68f289493753e1a616" id="r_a735192a42f72cd68f289493753e1a616"><td class="memItemLeft" align="right" valign="top">virtual CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a735192a42f72cd68f289493753e1a616">calculate_rate</a> (const CppAD::AD&lt; double &gt; T9) const</td></tr>
-<tr class="memdesc:a735192a42f72cd68f289493753e1a616"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the reaction rate for a given temperature using CppAD types.  <br /></td></tr>
-<tr class="separator:a735192a42f72cd68f289493753e1a616"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3a8ba9212d76d5ce51f20df6892c6061" id="r_a3a8ba9212d76d5ce51f20df6892c6061"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3a8ba9212d76d5ce51f20df6892c6061">calculate_forward_rate_log_derivative</a> (const double T9) const</td></tr>
-<tr class="separator:a3a8ba9212d76d5ce51f20df6892c6061"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a78f42664cc957e266b6cf15fda09be97" id="r_a78f42664cc957e266b6cf15fda09be97"><td class="memItemLeft" align="right" valign="top">virtual std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a78f42664cc957e266b6cf15fda09be97">peName</a> () const</td></tr>
-<tr class="memdesc:a78f42664cc957e266b6cf15fda09be97"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the reaction name in (projectile, ejectile) notation.  <br /></td></tr>
-<tr class="separator:a78f42664cc957e266b6cf15fda09be97"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5cb438adfefb640e4bc58e09053bd629" id="r_a5cb438adfefb640e4bc58e09053bd629"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5cb438adfefb640e4bc58e09053bd629">chapter</a> () const</td></tr>
-<tr class="memdesc:a5cb438adfefb640e4bc58e09053bd629"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the REACLIB chapter number.  <br /></td></tr>
-<tr class="separator:a5cb438adfefb640e4bc58e09053bd629"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a410e2ab0784ad751f82bbe55be603db0" id="r_a410e2ab0784ad751f82bbe55be603db0"><td class="memItemLeft" align="right" valign="top">std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a410e2ab0784ad751f82bbe55be603db0">sourceLabel</a> () const</td></tr>
-<tr class="memdesc:a410e2ab0784ad751f82bbe55be603db0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the source label for the rate data.  <br /></td></tr>
-<tr class="separator:a410e2ab0784ad751f82bbe55be603db0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a85968076e686e67763f4fdf4f72a892e" id="r_a85968076e686e67763f4fdf4f72a892e"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a85968076e686e67763f4fdf4f72a892e">rateCoefficients</a> () const</td></tr>
-<tr class="memdesc:a85968076e686e67763f4fdf4f72a892e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the set of rate coefficients.  <br /></td></tr>
-<tr class="separator:a85968076e686e67763f4fdf4f72a892e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab92785f331a446e51a0960b75d60b37b" id="r_ab92785f331a446e51a0960b75d60b37b"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab92785f331a446e51a0960b75d60b37b">contains</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
-<tr class="memdesc:ab92785f331a446e51a0960b75d60b37b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the reaction involves a given species as a reactant or product.  <br /></td></tr>
-<tr class="separator:ab92785f331a446e51a0960b75d60b37b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abbe243affa61ba9b2cd2a7b905cd5e45" id="r_abbe243affa61ba9b2cd2a7b905cd5e45"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abbe243affa61ba9b2cd2a7b905cd5e45">contains_reactant</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
-<tr class="memdesc:abbe243affa61ba9b2cd2a7b905cd5e45"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the reaction involves a given species as a reactant.  <br /></td></tr>
-<tr class="separator:abbe243affa61ba9b2cd2a7b905cd5e45"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a074d3cd2421fd5d0133e47f0522403e2" id="r_a074d3cd2421fd5d0133e47f0522403e2"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a074d3cd2421fd5d0133e47f0522403e2">contains_product</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
-<tr class="memdesc:a074d3cd2421fd5d0133e47f0522403e2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the reaction involves a given species as a product.  <br /></td></tr>
-<tr class="separator:a074d3cd2421fd5d0133e47f0522403e2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7dc8fda87e0581fde6da0a81cf4d7224" id="r_a7dc8fda87e0581fde6da0a81cf4d7224"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7dc8fda87e0581fde6da0a81cf4d7224">all_species</a> () const</td></tr>
-<tr class="memdesc:a7dc8fda87e0581fde6da0a81cf4d7224"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a set of all unique species involved in the reaction.  <br /></td></tr>
-<tr class="separator:a7dc8fda87e0581fde6da0a81cf4d7224"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a855ea65e4b62fb0cddc550424a4bc923" id="r_a855ea65e4b62fb0cddc550424a4bc923"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a855ea65e4b62fb0cddc550424a4bc923">reactant_species</a> () const</td></tr>
-<tr class="memdesc:a855ea65e4b62fb0cddc550424a4bc923"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a set of all unique reactant species.  <br /></td></tr>
-<tr class="separator:a855ea65e4b62fb0cddc550424a4bc923"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a01c67726efbaa2ff8e4d6f2c965f485c" id="r_a01c67726efbaa2ff8e4d6f2c965f485c"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a01c67726efbaa2ff8e4d6f2c965f485c">product_species</a> () const</td></tr>
-<tr class="memdesc:a01c67726efbaa2ff8e4d6f2c965f485c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a set of all unique product species.  <br /></td></tr>
-<tr class="separator:a01c67726efbaa2ff8e4d6f2c965f485c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1d3c8ab6d55155f9a21ad80ed8b9ef97" id="r_a1d3c8ab6d55155f9a21ad80ed8b9ef97"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1d3c8ab6d55155f9a21ad80ed8b9ef97">num_species</a> () const</td></tr>
-<tr class="memdesc:a1d3c8ab6d55155f9a21ad80ed8b9ef97"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the number of unique species involved in the reaction.  <br /></td></tr>
-<tr class="separator:a1d3c8ab6d55155f9a21ad80ed8b9ef97"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaf0c94db6536b4a9ac1ec08a5c8f01ac" id="r_aaf0c94db6536b4a9ac1ec08a5c8f01ac"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aaf0c94db6536b4a9ac1ec08a5c8f01ac">stoichiometry</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
-<tr class="memdesc:aaf0c94db6536b4a9ac1ec08a5c8f01ac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the stoichiometric coefficient for a given species.  <br /></td></tr>
-<tr class="separator:aaf0c94db6536b4a9ac1ec08a5c8f01ac"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad359c06d7196c1a7a955a7b66a51dbe3" id="r_ad359c06d7196c1a7a955a7b66a51dbe3"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, int &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad359c06d7196c1a7a955a7b66a51dbe3">stoichiometry</a> () const</td></tr>
-<tr class="memdesc:ad359c06d7196c1a7a955a7b66a51dbe3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a map of all species to their stoichiometric coefficients.  <br /></td></tr>
-<tr class="separator:ad359c06d7196c1a7a955a7b66a51dbe3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a084c38181408ed5e6fa2a2dd4d0ec905" id="r_a084c38181408ed5e6fa2a2dd4d0ec905"><td class="memItemLeft" align="right" valign="top">std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a084c38181408ed5e6fa2a2dd4d0ec905">id</a> () const</td></tr>
-<tr class="memdesc:a084c38181408ed5e6fa2a2dd4d0ec905"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the unique identifier of the reaction.  <br /></td></tr>
-<tr class="separator:a084c38181408ed5e6fa2a2dd4d0ec905"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abda0b4e4313e6d4ba57acf37d5976fb8" id="r_abda0b4e4313e6d4ba57acf37d5976fb8"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abda0b4e4313e6d4ba57acf37d5976fb8">qValue</a> () const</td></tr>
-<tr class="memdesc:abda0b4e4313e6d4ba57acf37d5976fb8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the Q-value of the reaction.  <br /></td></tr>
-<tr class="separator:abda0b4e4313e6d4ba57acf37d5976fb8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0b543e9b0bb4a21efe4b29780d9bdf5b" id="r_a0b543e9b0bb4a21efe4b29780d9bdf5b"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0b543e9b0bb4a21efe4b29780d9bdf5b">reactants</a> () const</td></tr>
-<tr class="memdesc:a0b543e9b0bb4a21efe4b29780d9bdf5b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the vector of reactant species.  <br /></td></tr>
-<tr class="separator:a0b543e9b0bb4a21efe4b29780d9bdf5b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6e2ff61b9e8409f2a561663628b8ce02" id="r_a6e2ff61b9e8409f2a561663628b8ce02"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6e2ff61b9e8409f2a561663628b8ce02">products</a> () const</td></tr>
-<tr class="memdesc:a6e2ff61b9e8409f2a561663628b8ce02"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the vector of product species.  <br /></td></tr>
-<tr class="separator:a6e2ff61b9e8409f2a561663628b8ce02"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa67d05dfabf007c1acad34052d9a1dba" id="r_aa67d05dfabf007c1acad34052d9a1dba"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa67d05dfabf007c1acad34052d9a1dba">is_reverse</a> () const</td></tr>
-<tr class="memdesc:aa67d05dfabf007c1acad34052d9a1dba"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if this is a reverse reaction rate.  <br /></td></tr>
-<tr class="separator:aa67d05dfabf007c1acad34052d9a1dba"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa1d71e38fc55ae691dbb9ec459a612a5" id="r_aa1d71e38fc55ae691dbb9ec459a612a5"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa1d71e38fc55ae691dbb9ec459a612a5">excess_energy</a> () const</td></tr>
-<tr class="memdesc:aa1d71e38fc55ae691dbb9ec459a612a5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the excess energy from the mass difference of reactants and products.  <br /></td></tr>
-<tr class="separator:aa1d71e38fc55ae691dbb9ec459a612a5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac426457cf0a54a15b206549422083bac" id="r_ac426457cf0a54a15b206549422083bac"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac426457cf0a54a15b206549422083bac">operator==</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;other) const</td></tr>
-<tr class="memdesc:ac426457cf0a54a15b206549422083bac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compares this reaction with another for equality based on their IDs.  <br /></td></tr>
-<tr class="separator:ac426457cf0a54a15b206549422083bac"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2f1c115a99bc7c477a2e858ff18b1b51" id="r_a2f1c115a99bc7c477a2e858ff18b1b51"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2f1c115a99bc7c477a2e858ff18b1b51">operator!=</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;other) const</td></tr>
-<tr class="memdesc:a2f1c115a99bc7c477a2e858ff18b1b51"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compares this reaction with another for inequality.  <br /></td></tr>
-<tr class="separator:a2f1c115a99bc7c477a2e858ff18b1b51"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af6c20e6d03a2d9f87632f71a90b88cb5" id="r_af6c20e6d03a2d9f87632f71a90b88cb5"><td class="memItemLeft" align="right" valign="top">uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af6c20e6d03a2d9f87632f71a90b88cb5">hash</a> (uint64_t seed=0) const</td></tr>
-<tr class="memdesc:af6c20e6d03a2d9f87632f71a90b88cb5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes a hash for the reaction based on its ID.  <br /></td></tr>
-<tr class="separator:af6c20e6d03a2d9f87632f71a90b88cb5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pro-attribs" name="pro-attribs"></a>
-Protected Attributes</h2></td></tr>
-<tr class="memitem:a7044d0a1d59d85502ce554e4ec2167e4" id="r_a7044d0a1d59d85502ce554e4ec2167e4"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7044d0a1d59d85502ce554e4ec2167e4">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
-<tr class="separator:a7044d0a1d59d85502ce554e4ec2167e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5c685e5a736b51799e5b9f6746c4126b" id="r_a5c685e5a736b51799e5b9f6746c4126b"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5c685e5a736b51799e5b9f6746c4126b">m_id</a></td></tr>
-<tr class="memdesc:a5c685e5a736b51799e5b9f6746c4126b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Unique identifier for the reaction (e.g., "h1+h1=&gt;h2+e+nu").  <br /></td></tr>
-<tr class="separator:a5c685e5a736b51799e5b9f6746c4126b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6124aa9fc2306349e1dd879a37923248" id="r_a6124aa9fc2306349e1dd879a37923248"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6124aa9fc2306349e1dd879a37923248">m_peName</a></td></tr>
-<tr class="memdesc:a6124aa9fc2306349e1dd879a37923248"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name of the reaction in (projectile, ejectile) notation (e.g. "p(p,g)d").  <br /></td></tr>
-<tr class="separator:a6124aa9fc2306349e1dd879a37923248"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a16f9cbb6269817099d3dc07d4e63da7b" id="r_a16f9cbb6269817099d3dc07d4e63da7b"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a16f9cbb6269817099d3dc07d4e63da7b">m_chapter</a></td></tr>
-<tr class="memdesc:a16f9cbb6269817099d3dc07d4e63da7b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Chapter number from the REACLIB database, defining the reaction structure.  <br /></td></tr>
-<tr class="separator:a16f9cbb6269817099d3dc07d4e63da7b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a59122a2898bb9af640cc3e9aeb49028b" id="r_a59122a2898bb9af640cc3e9aeb49028b"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a59122a2898bb9af640cc3e9aeb49028b">m_qValue</a> = 0.0</td></tr>
-<tr class="memdesc:a59122a2898bb9af640cc3e9aeb49028b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Q-value of the reaction in MeV.  <br /></td></tr>
-<tr class="separator:a59122a2898bb9af640cc3e9aeb49028b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a87a065b3c7806bcdb5eadb7de2978a11" id="r_a87a065b3c7806bcdb5eadb7de2978a11"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a87a065b3c7806bcdb5eadb7de2978a11">m_reactants</a></td></tr>
-<tr class="memdesc:a87a065b3c7806bcdb5eadb7de2978a11"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reactants of the reaction.  <br /></td></tr>
-<tr class="separator:a87a065b3c7806bcdb5eadb7de2978a11"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4b5607ed413acdf29539b8a57461e49e" id="r_a4b5607ed413acdf29539b8a57461e49e"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4b5607ed413acdf29539b8a57461e49e">m_products</a></td></tr>
-<tr class="memdesc:a4b5607ed413acdf29539b8a57461e49e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Products of the reaction.  <br /></td></tr>
-<tr class="separator:a4b5607ed413acdf29539b8a57461e49e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0185c6be5465d113f25e00aee1297cd6" id="r_a0185c6be5465d113f25e00aee1297cd6"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0185c6be5465d113f25e00aee1297cd6">m_sourceLabel</a></td></tr>
-<tr class="memdesc:a0185c6be5465d113f25e00aee1297cd6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Source label for the rate data (e.g., "wc12w", "st08").  <br /></td></tr>
-<tr class="separator:a0185c6be5465d113f25e00aee1297cd6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa61a9a024d7c4ff66a351ccd0277ec72" id="r_aa61a9a024d7c4ff66a351ccd0277ec72"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa61a9a024d7c4ff66a351ccd0277ec72">m_rateCoefficients</a></td></tr>
-<tr class="memdesc:aa61a9a024d7c4ff66a351ccd0277ec72"><td class="mdescLeft">&#160;</td><td class="mdescRight">The seven rate coefficients.  <br /></td></tr>
-<tr class="separator:aa61a9a024d7c4ff66a351ccd0277ec72"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0b0b9ac498080aae91ffd466d1ae85a9" id="r_a0b0b9ac498080aae91ffd466d1ae85a9"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0b0b9ac498080aae91ffd466d1ae85a9">m_reverse</a> = false</td></tr>
-<tr class="memdesc:a0b0b9ac498080aae91ffd466d1ae85a9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Flag indicating if this is a reverse reaction rate.  <br /></td></tr>
-<tr class="separator:a0b0b9ac498080aae91ffd466d1ae85a9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
-Private Member Functions</h2></td></tr>
-<tr class="memitem:a648b9ed6108bed2469dc028fb7e351af" id="r_a648b9ed6108bed2469dc028fb7e351af"><td class="memTemplParams" colspan="2">template&lt;typename T&gt; </td></tr>
-<tr class="memitem:a648b9ed6108bed2469dc028fb7e351af"><td class="memTemplItemLeft" align="right" valign="top">T&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#a648b9ed6108bed2469dc028fb7e351af">calculate_rate</a> (const T T9) const</td></tr>
-<tr class="memdesc:a648b9ed6108bed2469dc028fb7e351af"><td class="mdescLeft">&#160;</td><td class="mdescRight">Template implementation for calculating the reaction rate.  <br /></td></tr>
-<tr class="separator:a648b9ed6108bed2469dc028fb7e351af"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a83c121480533593adfd68c4a67a649f1" id="r_a83c121480533593adfd68c4a67a649f1"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a83c121480533593adfd68c4a67a649f1">calculate_rate</a> (double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const =0</td></tr>
+<tr class="memdesc:a83c121480533593adfd68c4a67a649f1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute the temperature- and composition-dependent reaction rate.  <br /></td></tr>
+<tr class="separator:a83c121480533593adfd68c4a67a649f1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af8303d67df61fc9e31ce054f0e8a3e14" id="r_af8303d67df61fc9e31ce054f0e8a3e14"><td class="memItemLeft" align="right" valign="top">virtual CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af8303d67df61fc9e31ce054f0e8a3e14">calculate_rate</a> (CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const =0</td></tr>
+<tr class="memdesc:af8303d67df61fc9e31ce054f0e8a3e14"><td class="mdescLeft">&#160;</td><td class="mdescRight">AD-enabled reaction rate for algorithmic differentiation.  <br /></td></tr>
+<tr class="separator:af8303d67df61fc9e31ce054f0e8a3e14"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a94b92308b9619ec20c690e55157786ba" id="r_a94b92308b9619ec20c690e55157786ba"><td class="memItemLeft" align="right" valign="top">virtual std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a94b92308b9619ec20c690e55157786ba">id</a> () const =0</td></tr>
+<tr class="memdesc:a94b92308b9619ec20c690e55157786ba"><td class="mdescLeft">&#160;</td><td class="mdescRight">A stable, unique identifier for this reaction instance.  <br /></td></tr>
+<tr class="separator:a94b92308b9619ec20c690e55157786ba"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac7b08c61cdc97268b9442afec4d08dad" id="r_ac7b08c61cdc97268b9442afec4d08dad"><td class="memItemLeft" align="right" valign="top">virtual const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac7b08c61cdc97268b9442afec4d08dad">reactants</a> () const =0</td></tr>
+<tr class="memdesc:ac7b08c61cdc97268b9442afec4d08dad"><td class="mdescLeft">&#160;</td><td class="mdescRight">Ordered list of reactant species.  <br /></td></tr>
+<tr class="separator:ac7b08c61cdc97268b9442afec4d08dad"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3d7451045d8df41ea98b5e419e0e5ab0" id="r_a3d7451045d8df41ea98b5e419e0e5ab0"><td class="memItemLeft" align="right" valign="top">virtual const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3d7451045d8df41ea98b5e419e0e5ab0">products</a> () const =0</td></tr>
+<tr class="memdesc:a3d7451045d8df41ea98b5e419e0e5ab0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Ordered list of product species.  <br /></td></tr>
+<tr class="separator:a3d7451045d8df41ea98b5e419e0e5ab0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a768db057d358240d4825c21869af0792" id="r_a768db057d358240d4825c21869af0792"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a768db057d358240d4825c21869af0792">contains</a> (const fourdst::atomic::Species &amp;species) const =0</td></tr>
+<tr class="memdesc:a768db057d358240d4825c21869af0792"><td class="mdescLeft">&#160;</td><td class="mdescRight">True if the species appears as a reactant or a product.  <br /></td></tr>
+<tr class="separator:a768db057d358240d4825c21869af0792"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab28bf4f9417ecabcc8350bae449fedd5" id="r_ab28bf4f9417ecabcc8350bae449fedd5"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab28bf4f9417ecabcc8350bae449fedd5">contains_reactant</a> (const fourdst::atomic::Species &amp;species) const =0</td></tr>
+<tr class="memdesc:ab28bf4f9417ecabcc8350bae449fedd5"><td class="mdescLeft">&#160;</td><td class="mdescRight">True if the species appears among the reactants.  <br /></td></tr>
+<tr class="separator:ab28bf4f9417ecabcc8350bae449fedd5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2708d2e8f42159df6605a5948b13c4c5" id="r_a2708d2e8f42159df6605a5948b13c4c5"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2708d2e8f42159df6605a5948b13c4c5">contains_product</a> (const fourdst::atomic::Species &amp;species) const =0</td></tr>
+<tr class="memdesc:a2708d2e8f42159df6605a5948b13c4c5"><td class="mdescLeft">&#160;</td><td class="mdescRight">True if the species appears among the products.  <br /></td></tr>
+<tr class="separator:a2708d2e8f42159df6605a5948b13c4c5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3906a668410e02239f9031b5fc580214" id="r_a3906a668410e02239f9031b5fc580214"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3906a668410e02239f9031b5fc580214">is_reverse</a> () const =0</td></tr>
+<tr class="memdesc:a3906a668410e02239f9031b5fc580214"><td class="mdescLeft">&#160;</td><td class="mdescRight">Whether this object represents a reverse (backward) rate.  <br /></td></tr>
+<tr class="separator:a3906a668410e02239f9031b5fc580214"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa13cd9097229fcc99128d9286b8f17e6" id="r_aa13cd9097229fcc99128d9286b8f17e6"><td class="memItemLeft" align="right" valign="top">virtual std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa13cd9097229fcc99128d9286b8f17e6">all_species</a> () const =0</td></tr>
+<tr class="memdesc:aa13cd9097229fcc99128d9286b8f17e6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of all unique species appearing in the reaction.  <br /></td></tr>
+<tr class="separator:aa13cd9097229fcc99128d9286b8f17e6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a82c14096308cdc9126ab6d9667febcd2" id="r_a82c14096308cdc9126ab6d9667febcd2"><td class="memItemLeft" align="right" valign="top">virtual std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a82c14096308cdc9126ab6d9667febcd2">reactant_species</a> () const =0</td></tr>
+<tr class="memdesc:a82c14096308cdc9126ab6d9667febcd2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of unique reactant species.  <br /></td></tr>
+<tr class="separator:a82c14096308cdc9126ab6d9667febcd2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0d16572ae2b664374d32ee6c4e22123a" id="r_a0d16572ae2b664374d32ee6c4e22123a"><td class="memItemLeft" align="right" valign="top">virtual std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0d16572ae2b664374d32ee6c4e22123a">product_species</a> () const =0</td></tr>
+<tr class="memdesc:a0d16572ae2b664374d32ee6c4e22123a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of unique product species.  <br /></td></tr>
+<tr class="separator:a0d16572ae2b664374d32ee6c4e22123a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae2a1b0395ac127c792a8049cd0bcc249" id="r_ae2a1b0395ac127c792a8049cd0bcc249"><td class="memItemLeft" align="right" valign="top">virtual size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae2a1b0395ac127c792a8049cd0bcc249">num_species</a> () const =0</td></tr>
+<tr class="memdesc:ae2a1b0395ac127c792a8049cd0bcc249"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of unique species involved in the reaction.  <br /></td></tr>
+<tr class="separator:ae2a1b0395ac127c792a8049cd0bcc249"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad49f4cad024db72c966d949c75f1ce4d" id="r_ad49f4cad024db72c966d949c75f1ce4d"><td class="memItemLeft" align="right" valign="top">virtual std::unordered_map&lt; fourdst::atomic::Species, int &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad49f4cad024db72c966d949c75f1ce4d">stoichiometry</a> () const =0</td></tr>
+<tr class="memdesc:ad49f4cad024db72c966d949c75f1ce4d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Full stoichiometry map for this reaction.  <br /></td></tr>
+<tr class="separator:ad49f4cad024db72c966d949c75f1ce4d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab7888b57507d6d27de6e5fcaea40fff5" id="r_ab7888b57507d6d27de6e5fcaea40fff5"><td class="memItemLeft" align="right" valign="top">virtual int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab7888b57507d6d27de6e5fcaea40fff5">stoichiometry</a> (const fourdst::atomic::Species &amp;species) const =0</td></tr>
+<tr class="memdesc:ab7888b57507d6d27de6e5fcaea40fff5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stoichiometric coefficient for a particular species.  <br /></td></tr>
+<tr class="separator:ab7888b57507d6d27de6e5fcaea40fff5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7ba8c18cd5445aa3499a6fd351183f7a" id="r_a7ba8c18cd5445aa3499a6fd351183f7a"><td class="memItemLeft" align="right" valign="top">virtual uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7ba8c18cd5445aa3499a6fd351183f7a">hash</a> (uint64_t seed) const =0</td></tr>
+<tr class="memdesc:a7ba8c18cd5445aa3499a6fd351183f7a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stable content-based hash for this reaction.  <br /></td></tr>
+<tr class="separator:a7ba8c18cd5445aa3499a6fd351183f7a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7e06936f9e8bb74e68eaa10e708e5d3c" id="r_a7e06936f9e8bb74e68eaa10e708e5d3c"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7e06936f9e8bb74e68eaa10e708e5d3c">qValue</a> () const =0</td></tr>
+<tr class="memdesc:a7e06936f9e8bb74e68eaa10e708e5d3c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Q-value of the reaction (typically MeV), positive if exothermic.  <br /></td></tr>
+<tr class="separator:a7e06936f9e8bb74e68eaa10e708e5d3c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae66b446c98add7e00a1d960f4e7c60dd" id="r_ae66b446c98add7e00a1d960f4e7c60dd"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae66b446c98add7e00a1d960f4e7c60dd">calculate_energy_generation_rate</a> (const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td></tr>
+<tr class="memdesc:ae66b446c98add7e00a1d960f4e7c60dd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convenience: energy generation rate from this reaction (double version).  <br /></td></tr>
+<tr class="separator:ae66b446c98add7e00a1d960f4e7c60dd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4282f85c34d6db1994c07e7a40f66d80" id="r_a4282f85c34d6db1994c07e7a40f66d80"><td class="memItemLeft" align="right" valign="top">virtual CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4282f85c34d6db1994c07e7a40f66d80">calculate_energy_generation_rate</a> (const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td></tr>
+<tr class="memdesc:a4282f85c34d6db1994c07e7a40f66d80"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convenience: AD-enabled energy generation rate (AD version).  <br /></td></tr>
+<tr class="separator:a4282f85c34d6db1994c07e7a40f66d80"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa2b615e764bb005e526ca9327319c735" id="r_aa2b615e764bb005e526ca9327319c735"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa2b615e764bb005e526ca9327319c735">calculate_log_rate_partial_deriv_wrt_T9</a> (double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;comp) const =0</td></tr>
+<tr class="memdesc:aa2b615e764bb005e526ca9327319c735"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logarithmic partial derivative of the rate with respect to temperature.  <br /></td></tr>
+<tr class="separator:aa2b615e764bb005e526ca9327319c735"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7f2590eee9f0dfb7b73cd92170a844b7" id="r_a7f2590eee9f0dfb7b73cd92170a844b7"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7f2590eee9f0dfb7b73cd92170a844b7">type</a> () const =0</td></tr>
+<tr class="memdesc:a7f2590eee9f0dfb7b73cd92170a844b7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Category of this reaction (e.g., REACLIB, WEAK, LOGICAL_REACLIB).  <br /></td></tr>
+<tr class="separator:a7f2590eee9f0dfb7b73cd92170a844b7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab95ce7fb022a9432bdc77f14679221ee" id="r_ab95ce7fb022a9432bdc77f14679221ee"><td class="memItemLeft" align="right" valign="top">virtual std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab95ce7fb022a9432bdc77f14679221ee">clone</a> () const =0</td></tr>
+<tr class="memdesc:ab95ce7fb022a9432bdc77f14679221ee"><td class="mdescLeft">&#160;</td><td class="mdescRight">Polymorphic deep copy.  <br /></td></tr>
+<tr class="separator:ab95ce7fb022a9432bdc77f14679221ee"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="friends" name="friends"></a>
 Friends</h2></td></tr>
@@ -254,11 +204,12 @@ Friends</h2></td></tr>
 <div class="textblock"><p>Represents a single nuclear reaction from a specific data source. </p>
 <p>This class encapsulates all properties of a single nuclear reaction as defined in formats like REACLIB, including reactants, products, Q-value, and rate coefficients from a particular evaluation (source).</p>
 <p>Example: </p><div class="fragment"><div class="line"><span class="comment">// Assuming species and rate coefficients are defined</span></div>
-<div class="line"><a class="code hl_function" href="#a7dff19d387e771d96c26e98d75ee9d5c">Reaction</a> p_gamma_d(</div>
+<div class="line"><a class="code hl_class" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> p_gamma_d(</div>
 <div class="line">    <span class="stringliteral">&quot;H_1_H_1_to_H_2&quot;</span>, <span class="stringliteral">&quot;p(p,g)d&quot;</span>, 1, {H_1, H_1}, {H_2}, 5.493, <span class="stringliteral">&quot;st08&quot;</span>, rate_coeffs</div>
 <div class="line">);</div>
-<div class="line"><span class="keywordtype">double</span> rate = p_gamma_d.calculate_rate(0.1); <span class="comment">// T9 = 0.1</span></div>
-<div class="ttc" id="aclassgridfire_1_1reaction_1_1_reaction_html_a7dff19d387e771d96c26e98d75ee9d5c"><div class="ttname"><a href="#a7dff19d387e771d96c26e98d75ee9d5c">gridfire::reaction::Reaction::Reaction</a></div><div class="ttdeci">Reaction(const std::string_view id, const std::string_view peName, const int chapter, const std::vector&lt; fourdst::atomic::Species &gt; &amp;reactants, const std::vector&lt; fourdst::atomic::Species &gt; &amp;products, const double qValue, const std::string_view label, const RateCoefficientSet &amp;sets, const bool reverse=false)</div><div class="ttdoc">Constructs a Reaction object.</div><div class="ttdef"><b>Definition</b> reaction.cpp:19</div></div>
+<div class="line"><span class="keywordtype">double</span> rate = p_gamma_d.<a class="code hl_function" href="#a83c121480533593adfd68c4a67a649f1">calculate_rate</a>(0.1); <span class="comment">// T9 = 0.1</span></div>
+<div class="ttc" id="aclassgridfire_1_1reaction_1_1_reaction_html"><div class="ttname"><a href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></div><div class="ttdoc">Represents a single nuclear reaction from a specific data source.</div><div class="ttdef"><b>Definition</b> reaction.h:78</div></div>
+<div class="ttc" id="aclassgridfire_1_1reaction_1_1_reaction_html_a83c121480533593adfd68c4a67a649f1"><div class="ttname"><a href="#a83c121480533593adfd68c4a67a649f1">gridfire::reaction::Reaction::calculate_rate</a></div><div class="ttdeci">virtual double calculate_rate(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const =0</div><div class="ttdoc">Compute the temperature- and composition-dependent reaction rate.</div></div>
 </div><!-- fragment --> </div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
 <a id="ab1860df84843be70f97469761e11ab6a" name="ab1860df84843be70f97469761e11ab6a"></a>
 <h2 class="memtitle"><span class="permalink"><a href="#ab1860df84843be70f97469761e11ab6a">&#9670;&#160;</a></span>~Reaction()</h2>
@@ -283,85 +234,13 @@ Friends</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p>Virtual destructor. </p>
-
-</div>
-</div>
-<a id="a7dff19d387e771d96c26e98d75ee9d5c" name="a7dff19d387e771d96c26e98d75ee9d5c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7dff19d387e771d96c26e98d75ee9d5c">&#9670;&#160;</a></span>Reaction()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">gridfire::reaction::Reaction::Reaction </td>
-          <td>(</td>
-          <td class="paramtype">const std::string_view</td>          <td class="paramname"><span class="paramname"><em>id</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const std::string_view</td>          <td class="paramname"><span class="paramname"><em>peName</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>chapter</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>reactants</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>products</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>qValue</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const std::string_view</td>          <td class="paramname"><span class="paramname"><em>label</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>sets</em></span>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const bool</td>          <td class="paramname"><span class="paramname"><em>reverse</em></span><span class="paramdefsep"> = </span><span class="paramdefval">false</span>&#160;)</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Constructs a <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> object. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">id</td><td>A unique identifier for the reaction. </td></tr>
-    <tr><td class="paramname">peName</td><td>The name in (projectile, ejectile) notation (e.g., "p(p,g)d"). </td></tr>
-    <tr><td class="paramname">chapter</td><td>The REACLIB chapter number, defining reaction structure. </td></tr>
-    <tr><td class="paramname">reactants</td><td>A vector of reactant species. </td></tr>
-    <tr><td class="paramname">products</td><td>A vector of product species. </td></tr>
-    <tr><td class="paramname">qValue</td><td>The Q-value of the reaction in MeV. </td></tr>
-    <tr><td class="paramname">label</td><td>The source label for the rate data (e.g., "wc12", "st08"). </td></tr>
-    <tr><td class="paramname">sets</td><td>The set of rate coefficients. </td></tr>
-    <tr><td class="paramname">reverse</td><td>True if this is a reverse reaction rate. </td></tr>
-  </table>
-  </dd>
-</dl>
+<p>Virtual destructor for correct polymorphic cleanup. </p>
 
 </div>
 </div>
 <h2 class="groupheader">Member Function Documentation</h2>
-<a id="a7dc8fda87e0581fde6da0a81cf4d7224" name="a7dc8fda87e0581fde6da0a81cf4d7224"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7dc8fda87e0581fde6da0a81cf4d7224">&#9670;&#160;</a></span>all_species()</h2>
+<a id="aa13cd9097229fcc99128d9286b8f17e6" name="aa13cd9097229fcc99128d9286b8f17e6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa13cd9097229fcc99128d9286b8f17e6">&#9670;&#160;</a></span>all_species()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -370,7 +249,7 @@ Friends</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::unordered_set&lt; Species &gt; gridfire::reaction::Reaction::all_species </td>
+          <td class="memname">virtual std::unordered_set&lt; fourdst::atomic::Species &gt; gridfire::reaction::Reaction::all_species </td>
           <td>(</td>
           <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
           <td> const</td>
@@ -378,18 +257,20 @@ Friends</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Gets a set of all unique species involved in the reaction. </p>
-<dl class="section return"><dt>Returns</dt><dd>An unordered_set of all reactant and product species. </dd></dl>
+<p>Set of all unique species appearing in the reaction. </p>
+<dl class="section return"><dt>Returns</dt><dd>Unordered set of all reactants and products (no duplicates). </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a6e567323ca019eadcbb9dbb814ebeb0b">gridfire::rates::weak::WeakReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a445777acbbee2032d83a256181a90e3c">gridfire::reaction::ReaclibReaction</a>.</p>
 
 </div>
 </div>
-<a id="a3a8ba9212d76d5ce51f20df6892c6061" name="a3a8ba9212d76d5ce51f20df6892c6061"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3a8ba9212d76d5ce51f20df6892c6061">&#9670;&#160;</a></span>calculate_forward_rate_log_derivative()</h2>
+<a id="a4282f85c34d6db1994c07e7a40f66d80" name="a4282f85c34d6db1994c07e7a40f66d80"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4282f85c34d6db1994c07e7a40f66d80">&#9670;&#160;</a></span>calculate_energy_generation_rate() <span class="overload">[1/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -398,497 +279,34 @@ Friends</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">double gridfire::reaction::Reaction::calculate_forward_rate_log_derivative </td>
+          <td class="memname">virtual CppAD::AD&lt; double &gt; gridfire::reaction::Reaction::calculate_energy_generation_rate </td>
           <td>(</td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span></td><td>)</td>
-          <td> const</td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel virtual">virtual</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Reimplemented in <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#aa4b8d0d30459f360ff6e29d848e943d5">gridfire::reaction::LogicalReaction</a>.</p>
-
-</div>
-</div>
-<a id="a735192a42f72cd68f289493753e1a616" name="a735192a42f72cd68f289493753e1a616"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a735192a42f72cd68f289493753e1a616">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[1/3]</span></h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
         <tr>
-          <td class="memname">CppAD::AD&lt; double &gt; gridfire::reaction::Reaction::calculate_rate </td>
-          <td>(</td>
-          <td class="paramtype">const CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>T9</em></span></td><td>)</td>
-          <td> const</td>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
         </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel virtual">virtual</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Calculates the reaction rate for a given temperature using CppAD types. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K, as a CppAD::AD&lt;double&gt;. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The calculated reaction rate, as a CppAD::AD&lt;double&gt;. </dd></dl>
-
-<p>Reimplemented in <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#adad6f4297c1d8ce487eab092b73cdd32">gridfire::reaction::LogicalReaction</a>.</p>
-
-</div>
-</div>
-<a id="ad81e9b2a1773470059ca6989c60556ec" name="ad81e9b2a1773470059ca6989c60556ec"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad81e9b2a1773470059ca6989c60556ec">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[2/3]</span></h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
         <tr>
-          <td class="memname">double gridfire::reaction::Reaction::calculate_rate </td>
-          <td>(</td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span></td><td>)</td>
-          <td> const</td>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
         </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel virtual">virtual</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Calculates the reaction rate for a given temperature. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The calculated reaction rate. </dd></dl>
-
-<p>Reimplemented in <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#a1d2fb3b6a6a1860ace98b32447d1dd1b">gridfire::reaction::LogicalReaction</a>.</p>
-
-</div>
-</div>
-<a id="a648b9ed6108bed2469dc028fb7e351af" name="a648b9ed6108bed2469dc028fb7e351af"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a648b9ed6108bed2469dc028fb7e351af">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[3/3]</span></h2>
-
-<div class="memitem">
-<div class="memproto">
-<div class="memtemplate">
-template&lt;typename T&gt; </div>
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
         <tr>
-          <td class="memname">T gridfire::reaction::Reaction::calculate_rate </td>
-          <td>(</td>
-          <td class="paramtype">const T</td>          <td class="paramname"><span class="paramname"><em>T9</em></span></td><td>)</td>
-          <td> const</td>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
         </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel private">private</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Template implementation for calculating the reaction rate. </p>
-<dl class="tparams"><dt>Template Parameters</dt><dd>
-  <table class="tparams">
-    <tr><td class="paramname">T</td><td>The numeric type (double or CppAD::AD&lt;double&gt;). </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The calculated reaction rate.</dd></dl>
-<p>The rate is calculated using the standard REACLIB formula: <code>rate = exp(a0 + a1/T9 + a2/T9^(1/3) + a3*T9^(1/3) + a4*T9 + a5*T9^(5/3) + a6*ln(T9))</code> </p>
-
-</div>
-</div>
-<a id="a5cb438adfefb640e4bc58e09053bd629" name="a5cb438adfefb640e4bc58e09053bd629"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5cb438adfefb640e4bc58e09053bd629">&#9670;&#160;</a></span>chapter()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
         <tr>
-          <td class="memname">int gridfire::reaction::Reaction::chapter </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
         </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets the REACLIB chapter number. </p>
-<dl class="section return"><dt>Returns</dt><dd>The chapter number. </dd></dl>
-
-</div>
-</div>
-<a id="ab92785f331a446e51a0960b75d60b37b" name="ab92785f331a446e51a0960b75d60b37b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab92785f331a446e51a0960b75d60b37b">&#9670;&#160;</a></span>contains()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
         <tr>
-          <td class="memname">bool gridfire::reaction::Reaction::contains </td>
-          <td>(</td>
-          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Checks if the reaction involves a given species as a reactant or product. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the species is involved, false otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="a074d3cd2421fd5d0133e47f0522403e2" name="a074d3cd2421fd5d0133e47f0522403e2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a074d3cd2421fd5d0133e47f0522403e2">&#9670;&#160;</a></span>contains_product()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">bool gridfire::reaction::Reaction::contains_product </td>
-          <td>(</td>
-          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Checks if the reaction involves a given species as a product. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the species is a product, false otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="abbe243affa61ba9b2cd2a7b905cd5e45" name="abbe243affa61ba9b2cd2a7b905cd5e45"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abbe243affa61ba9b2cd2a7b905cd5e45">&#9670;&#160;</a></span>contains_reactant()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">bool gridfire::reaction::Reaction::contains_reactant </td>
-          <td>(</td>
-          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Checks if the reaction involves a given species as a reactant. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the species is a reactant, false otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="aa1d71e38fc55ae691dbb9ec459a612a5" name="aa1d71e38fc55ae691dbb9ec459a612a5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa1d71e38fc55ae691dbb9ec459a612a5">&#9670;&#160;</a></span>excess_energy()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double gridfire::reaction::Reaction::excess_energy </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Calculates the excess energy from the mass difference of reactants and products. </p>
-<dl class="section return"><dt>Returns</dt><dd>The excess energy in MeV. </dd></dl>
-
-</div>
-</div>
-<a id="af6c20e6d03a2d9f87632f71a90b88cb5" name="af6c20e6d03a2d9f87632f71a90b88cb5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af6c20e6d03a2d9f87632f71a90b88cb5">&#9670;&#160;</a></span>hash()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">uint64_t gridfire::reaction::Reaction::hash </td>
-          <td>(</td>
-          <td class="paramtype">uint64_t</td>          <td class="paramname"><span class="paramname"><em>seed</em></span><span class="paramdefsep"> = </span><span class="paramdefval">0</span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Computes a hash for the reaction based on its ID. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">seed</td><td>The seed for the hash function. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A 64-bit hash value.</dd></dl>
-<p>Uses the XXHash64 algorithm on the reaction's ID string. </p>
-
-</div>
-</div>
-<a id="a084c38181408ed5e6fa2a2dd4d0ec905" name="a084c38181408ed5e6fa2a2dd4d0ec905"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a084c38181408ed5e6fa2a2dd4d0ec905">&#9670;&#160;</a></span>id()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::string_view gridfire::reaction::Reaction::id </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets the unique identifier of the reaction. </p>
-<dl class="section return"><dt>Returns</dt><dd>The reaction ID. </dd></dl>
-
-</div>
-</div>
-<a id="aa67d05dfabf007c1acad34052d9a1dba" name="aa67d05dfabf007c1acad34052d9a1dba"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa67d05dfabf007c1acad34052d9a1dba">&#9670;&#160;</a></span>is_reverse()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">bool gridfire::reaction::Reaction::is_reverse </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Checks if this is a reverse reaction rate. </p>
-<dl class="section return"><dt>Returns</dt><dd>True if it is a reverse rate, false otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="a1d3c8ab6d55155f9a21ad80ed8b9ef97" name="a1d3c8ab6d55155f9a21ad80ed8b9ef97"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1d3c8ab6d55155f9a21ad80ed8b9ef97">&#9670;&#160;</a></span>num_species()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">size_t gridfire::reaction::Reaction::num_species </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets the number of unique species involved in the reaction. </p>
-<dl class="section return"><dt>Returns</dt><dd>The count of unique species. </dd></dl>
-
-</div>
-</div>
-<a id="a2f1c115a99bc7c477a2e858ff18b1b51" name="a2f1c115a99bc7c477a2e858ff18b1b51"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2f1c115a99bc7c477a2e858ff18b1b51">&#9670;&#160;</a></span>operator!=()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">bool gridfire::reaction::Reaction::operator!= </td>
-          <td>(</td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>other</em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Compares this reaction with another for inequality. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> to compare with. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the reactions are not equal. </dd></dl>
-
-</div>
-</div>
-<a id="ac426457cf0a54a15b206549422083bac" name="ac426457cf0a54a15b206549422083bac"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac426457cf0a54a15b206549422083bac">&#9670;&#160;</a></span>operator==()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">bool gridfire::reaction::Reaction::operator== </td>
-          <td>(</td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>other</em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Compares this reaction with another for equality based on their IDs. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> to compare with. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the reaction IDs are the same. </dd></dl>
-
-</div>
-</div>
-<a id="a78f42664cc957e266b6cf15fda09be97" name="a78f42664cc957e266b6cf15fda09be97"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a78f42664cc957e266b6cf15fda09be97">&#9670;&#160;</a></span>peName()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">virtual std::string_view gridfire::reaction::Reaction::peName </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>index_to_species_map</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -898,13 +316,27 @@ template&lt;typename T&gt; </div>
 </table>
 </div><div class="memdoc">
 
-<p>Gets the reaction name in (projectile, ejectile) notation. </p>
-<dl class="section return"><dt>Returns</dt><dd>The reaction name (e.g., "p(p,g)d"). </dd></dl>
+<p>Convenience: AD-enabled energy generation rate (AD version). </p>
+<p>Default implementation multiplies the AD rate by the reaction Q-value. Electron quantities (Ye, mue) are ignored in this default, so override if they contribute.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction as CppAD::AD&lt;double&gt; (ignored by default). </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential as CppAD::AD&lt;double&gt; (ignored by default). </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector as CppAD::AD&lt;double&gt; values. </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Mapping from state-vector index to Species. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Energy generation rate as CppAD::AD&lt;double&gt;. </dd></dl>
+
+<p>Reimplemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#af515e3587a1050c4bc59657696be5f9b">gridfire::rates::weak::WeakReaction</a>.</p>
 
 </div>
 </div>
-<a id="a01c67726efbaa2ff8e4d6f2c965f485c" name="a01c67726efbaa2ff8e4d6f2c965f485c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a01c67726efbaa2ff8e4d6f2c965f485c">&#9670;&#160;</a></span>product_species()</h2>
+<a id="ae66b446c98add7e00a1d960f4e7c60dd" name="ae66b446c98add7e00a1d960f4e7c60dd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae66b446c98add7e00a1d960f4e7c60dd">&#9670;&#160;</a></span>calculate_energy_generation_rate() <span class="overload">[2/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -913,7 +345,265 @@ template&lt;typename T&gt; </div>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::unordered_set&lt; Species &gt; gridfire::reaction::Reaction::product_species </td>
+          <td class="memname">virtual double gridfire::reaction::Reaction::calculate_energy_generation_rate </td>
+          <td>(</td>
+          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>index_to_species_map</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Convenience: energy generation rate from this reaction (double version). </p>
+<p>Default implementation multiplies the scalar rate by the reaction Q-value. Electron quantities (Ye, mue) are ignored in this default, so override in derived classes if needed. Sign convention follows <a class="el" href="#a7e06936f9e8bb74e68eaa10e708e5d3c" title="Q-value of the reaction (typically MeV), positive if exothermic.">qValue()</a>.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK (10^9 K). </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density (g cm^-3). </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction (ignored by default implementation). </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential (ignored by default implementation). </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector. </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Mapping from state-vector index to Species. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Energy generation rate, typically rate * <a class="el" href="#a7e06936f9e8bb74e68eaa10e708e5d3c" title="Q-value of the reaction (typically MeV), positive if exothermic.">qValue()</a>. </dd></dl>
+
+<p>Reimplemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a091d6d4aa59f788c97f9b5481f46f1b5">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="aa2b615e764bb005e526ca9327319c735" name="aa2b615e764bb005e526ca9327319c735"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa2b615e764bb005e526ca9327319c735">&#9670;&#160;</a></span>calculate_log_rate_partial_deriv_wrt_T9()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual double gridfire::reaction::Reaction::calculate_log_rate_partial_deriv_wrt_T9 </td>
+          <td>(</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logarithmic partial derivative of the rate with respect to temperature. </p>
+<p>Implementations return d(ln rate)/d(ln T9) or an equivalent measure (as documented by the concrete class), evaluated at the provided state.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK (10^9 K). </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density (g cm^-3). </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object providing composition in a convenient form. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The logarithmic temperature derivative of the rate. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac2d5366d4b5766413db34558dbce3cb3">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a9b1363314159eaf9c56aaa233f5eebd6">gridfire::reaction::LogicalReaclibReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="af8303d67df61fc9e31ce054f0e8a3e14" name="af8303d67df61fc9e31ce054f0e8a3e14"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af8303d67df61fc9e31ce054f0e8a3e14">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual CppAD::AD&lt; double &gt; gridfire::reaction::Reaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>index_to_species_map</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>AD-enabled reaction rate for algorithmic differentiation. </p>
+<p>This overload mirrors calculate_rate(double, ...) but operates on CppAD types to enable derivative calculations w.r.t. its inputs.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector as CppAD::AD&lt;double&gt; values. </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Mapping from state-vector index to Species, used to interpret Y. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The reaction rate as a CppAD::AD&lt;double&gt; value. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90ca346e2321516656b83d863416671e">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ab5bdbe13239f1180f32fb0a14a60d0a9">gridfire::reaction::LogicalReaclibReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#afec5ccf7a8fb1ba56c8cc852ce858c5e">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="a83c121480533593adfd68c4a67a649f1" name="a83c121480533593adfd68c4a67a649f1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a83c121480533593adfd68c4a67a649f1">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual double gridfire::reaction::Reaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>Ye</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>mue</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>index_to_species_map</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Compute the temperature- and composition-dependent reaction rate. </p>
+<p>This is the primary interface used by the network to obtain the rate of a single reaction at the given thermodynamic state and composition. The exact units and normalization are defined by the concrete implementation (e.g., REACLIB typically provides NA&lt;sigma v&gt; with units depending on the reaction order). Implementations may use density/electron properties for weak processes or screening, and the composition vector for multi-body reactions.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK (10^9 K). </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density (g cm^-3). May be unused for some reaction types. </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction. May be unused depending on the reaction type. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential. May be unused depending on the reaction type. </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector (molar abundances or number fractions) indexed consistently with index_to_species_map. </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Mapping from state-vector index to Species, used to interpret Y. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The reaction rate for the forward direction, with units/normalization defined by the specific model (implementation must document its convention). </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a05df0657efed55eb4262c7834d81400a">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ac21a726884930e6a00792e7c3eb43f42">gridfire::reaction::LogicalReaclibReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#acd16b1daf13456b3523362a37b1bf9b0">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="ab95ce7fb022a9432bdc77f14679221ee" name="ab95ce7fb022a9432bdc77f14679221ee"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab95ce7fb022a9432bdc77f14679221ee">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt; gridfire::reaction::Reaction::clone </td>
           <td>(</td>
           <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
           <td> const</td>
@@ -921,18 +611,20 @@ template&lt;typename T&gt; </div>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Gets a set of all unique product species. </p>
-<dl class="section return"><dt>Returns</dt><dd>An unordered_set of product species. </dd></dl>
+<p>Polymorphic deep copy. </p>
+<dl class="section return"><dt>Returns</dt><dd>A std::unique_ptr owning a new <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> equal to this one. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac10e1451d20876f6eab199e127f213c7">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad113b9cb64c449f9449c4cce4fa64076">gridfire::reaction::LogicalReaclibReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a54fde02e7010e806136f976ab64b1740">gridfire::reaction::ReaclibReaction</a>.</p>
 
 </div>
 </div>
-<a id="a6e2ff61b9e8409f2a561663628b8ce02" name="a6e2ff61b9e8409f2a561663628b8ce02"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6e2ff61b9e8409f2a561663628b8ce02">&#9670;&#160;</a></span>products()</h2>
+<a id="a768db057d358240d4825c21869af0792" name="a768db057d358240d4825c21869af0792"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a768db057d358240d4825c21869af0792">&#9670;&#160;</a></span>contains()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -941,203 +633,7 @@ template&lt;typename T&gt; </div>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::reaction::Reaction::products </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets the vector of product species. </p>
-<dl class="section return"><dt>Returns</dt><dd>A const reference to the vector of products. </dd></dl>
-
-</div>
-</div>
-<a id="abda0b4e4313e6d4ba57acf37d5976fb8" name="abda0b4e4313e6d4ba57acf37d5976fb8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abda0b4e4313e6d4ba57acf37d5976fb8">&#9670;&#160;</a></span>qValue()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double gridfire::reaction::Reaction::qValue </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets the Q-value of the reaction. </p>
-<dl class="section return"><dt>Returns</dt><dd>The Q-value in whatever units the reaction was defined in (usually MeV). </dd></dl>
-
-</div>
-</div>
-<a id="a85968076e686e67763f4fdf4f72a892e" name="a85968076e686e67763f4fdf4f72a892e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a85968076e686e67763f4fdf4f72a892e">&#9670;&#160;</a></span>rateCoefficients()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">const <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> &amp; gridfire::reaction::Reaction::rateCoefficients </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets the set of rate coefficients. </p>
-<dl class="section return"><dt>Returns</dt><dd>A const reference to the <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html" title="Holds the seven coefficients for the REACLIB rate equation.">RateCoefficientSet</a>. </dd></dl>
-
-</div>
-</div>
-<a id="a855ea65e4b62fb0cddc550424a4bc923" name="a855ea65e4b62fb0cddc550424a4bc923"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a855ea65e4b62fb0cddc550424a4bc923">&#9670;&#160;</a></span>reactant_species()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::unordered_set&lt; Species &gt; gridfire::reaction::Reaction::reactant_species </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets a set of all unique reactant species. </p>
-<dl class="section return"><dt>Returns</dt><dd>An unordered_set of reactant species. </dd></dl>
-
-</div>
-</div>
-<a id="a0b543e9b0bb4a21efe4b29780d9bdf5b" name="a0b543e9b0bb4a21efe4b29780d9bdf5b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0b543e9b0bb4a21efe4b29780d9bdf5b">&#9670;&#160;</a></span>reactants()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::reaction::Reaction::reactants </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets the vector of reactant species. </p>
-<dl class="section return"><dt>Returns</dt><dd>A const reference to the vector of reactants. </dd></dl>
-
-</div>
-</div>
-<a id="a410e2ab0784ad751f82bbe55be603db0" name="a410e2ab0784ad751f82bbe55be603db0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a410e2ab0784ad751f82bbe55be603db0">&#9670;&#160;</a></span>sourceLabel()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::string_view gridfire::reaction::Reaction::sourceLabel </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets the source label for the rate data. </p>
-<dl class="section return"><dt>Returns</dt><dd>The source label (e.g., "wc12w", "st08"). </dd></dl>
-
-</div>
-</div>
-<a id="ad359c06d7196c1a7a955a7b66a51dbe3" name="ad359c06d7196c1a7a955a7b66a51dbe3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad359c06d7196c1a7a955a7b66a51dbe3">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[1/2]</span></h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::unordered_map&lt; Species, int &gt; gridfire::reaction::Reaction::stoichiometry </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Gets a map of all species to their stoichiometric coefficients. </p>
-<dl class="section return"><dt>Returns</dt><dd>An unordered_map from species to their integer coefficients. </dd></dl>
-
-</div>
-</div>
-<a id="aaf0c94db6536b4a9ac1ec08a5c8f01ac" name="aaf0c94db6536b4a9ac1ec08a5c8f01ac"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aaf0c94db6536b4a9ac1ec08a5c8f01ac">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[2/2]</span></h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">int gridfire::reaction::Reaction::stoichiometry </td>
+          <td class="memname">virtual bool gridfire::reaction::Reaction::contains </td>
           <td>(</td>
           <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
           <td> const</td>
@@ -1145,19 +641,465 @@ template&lt;typename T&gt; </div>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Calculates the stoichiometric coefficient for a given species. </p>
+<p>True if the species appears as a reactant or a product. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">species</td><td>The species for which to find the coefficient. </td></tr>
+    <tr><td class="paramname">species</td><td>Species to test. </td></tr>
   </table>
   </dd>
 </dl>
-<dl class="section return"><dt>Returns</dt><dd>The stoichiometric coefficient (negative for reactants, positive for products). </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>Whether the species participates in the reaction (either side). </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a745b161968f37873b5d40fe6bf9d2118">gridfire::rates::weak::WeakReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a171b690e1abaf23f11a94c39e9f8c944">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="a2708d2e8f42159df6605a5948b13c4c5" name="a2708d2e8f42159df6605a5948b13c4c5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2708d2e8f42159df6605a5948b13c4c5">&#9670;&#160;</a></span>contains_product()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool gridfire::reaction::Reaction::contains_product </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>True if the species appears among the products. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>Species to test. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Whether the species is a product. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a957b5bfe70e536290ef677a7c5b6643f">gridfire::rates::weak::WeakReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a4e4811436d09afaa4a14c51d9af71f88">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="ab28bf4f9417ecabcc8350bae449fedd5" name="ab28bf4f9417ecabcc8350bae449fedd5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab28bf4f9417ecabcc8350bae449fedd5">&#9670;&#160;</a></span>contains_reactant()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool gridfire::reaction::Reaction::contains_reactant </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>True if the species appears among the reactants. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>Species to test. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Whether the species is a reactant. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a98095e6536d9a6434c5955f4c169d505">gridfire::rates::weak::WeakReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a65a12e5f6180873866cfaaf130fd1156">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="a7ba8c18cd5445aa3499a6fd351183f7a" name="a7ba8c18cd5445aa3499a6fd351183f7a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7ba8c18cd5445aa3499a6fd351183f7a">&#9670;&#160;</a></span>hash()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual uint64_t gridfire::reaction::Reaction::hash </td>
+          <td>(</td>
+          <td class="paramtype">uint64_t</td>          <td class="paramname"><span class="paramname"><em>seed</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Stable content-based hash for this reaction. </p>
+<p>Intended for use in caches, sets, and order-independent hashing of <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> collections. Implementations should produce the same value across processes for the same content and seed. </p><dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">seed</td><td>Seed value to initialize/mix into the hash. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>64-bit hash value. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad2ba6b584cb2df7c15633fca81ce6af1">gridfire::rates::weak::WeakReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a661dd461e51c37133f7f9931389fd3cc">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="a94b92308b9619ec20c690e55157786ba" name="a94b92308b9619ec20c690e55157786ba"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a94b92308b9619ec20c690e55157786ba">&#9670;&#160;</a></span>id()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::string_view gridfire::reaction::Reaction::id </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>A stable, unique identifier for this reaction instance. </p>
+<dl class="section return"><dt>Returns</dt><dd>String view of the reaction ID (stable across runs and suitable for lookups). </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad01a15d95878c9edbf57cd9045c4413b">gridfire::rates::weak::WeakReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a06312f834439ccf93012dea53cab47ce">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="a3906a668410e02239f9031b5fc580214" name="a3906a668410e02239f9031b5fc580214"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3906a668410e02239f9031b5fc580214">&#9670;&#160;</a></span>is_reverse()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool gridfire::reaction::Reaction::is_reverse </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Whether this object represents a reverse (backward) rate. </p>
+<p>Implementations may pair forward/reverse rates for detailed balance. This flag indicates that the parameterization corresponds to the reverse direction. </p><dl class="section return"><dt>Returns</dt><dd>True for a reverse rate, false for a forward rate. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90b62d922d91832859516450cf8e3876">gridfire::rates::weak::WeakReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a181b2c75af1f2701c43594c5bb2bac2d">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="ae2a1b0395ac127c792a8049cd0bcc249" name="ae2a1b0395ac127c792a8049cd0bcc249"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae2a1b0395ac127c792a8049cd0bcc249">&#9670;&#160;</a></span>num_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual size_t gridfire::reaction::Reaction::num_species </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of unique species involved in the reaction. </p>
+<dl class="section return"><dt>Returns</dt><dd>Count of distinct species across reactants and products. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1210917ca1727ea474bb606cf8279edb">gridfire::rates::weak::WeakReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a9205126955ad38f56e8aca3112bc150a">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="a0d16572ae2b664374d32ee6c4e22123a" name="a0d16572ae2b664374d32ee6c4e22123a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0d16572ae2b664374d32ee6c4e22123a">&#9670;&#160;</a></span>product_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::unordered_set&lt; fourdst::atomic::Species &gt; gridfire::reaction::Reaction::product_species </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set of unique product species. </p>
+<dl class="section return"><dt>Returns</dt><dd>Unordered set of product species (no duplicates). </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a5c60feacb0ac48b35323d9f688315316">gridfire::rates::weak::WeakReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a67c8fa4d5929c7a8cbca9b3d9dd2b704">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="a3d7451045d8df41ea98b5e419e0e5ab0" name="a3d7451045d8df41ea98b5e419e0e5ab0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3d7451045d8df41ea98b5e419e0e5ab0">&#9670;&#160;</a></span>products()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::reaction::Reaction::products </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Ordered list of product species. </p>
+<p>Multiplicity is represented by duplicates if applicable. </p><dl class="section return"><dt>Returns</dt><dd>Const reference to the vector of products. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aed0ea28ed3ba96a9f86aa9db947ec01c">gridfire::rates::weak::WeakReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a5f563b99bb550d5bafa2a989502de019">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="a7e06936f9e8bb74e68eaa10e708e5d3c" name="a7e06936f9e8bb74e68eaa10e708e5d3c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7e06936f9e8bb74e68eaa10e708e5d3c">&#9670;&#160;</a></span>qValue()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual double gridfire::reaction::Reaction::qValue </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Q-value of the reaction (typically MeV), positive if exothermic. </p>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> Q-value used for energy accounting. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#afedb724bf9f1c8fc91d853f2bedb10cb">gridfire::rates::weak::WeakReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae47931948f12816eb890c0db4fff4d68">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="a82c14096308cdc9126ab6d9667febcd2" name="a82c14096308cdc9126ab6d9667febcd2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a82c14096308cdc9126ab6d9667febcd2">&#9670;&#160;</a></span>reactant_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::unordered_set&lt; fourdst::atomic::Species &gt; gridfire::reaction::Reaction::reactant_species </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set of unique reactant species. </p>
+<dl class="section return"><dt>Returns</dt><dd>Unordered set of reactant species (no duplicates). </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aae06ff559026e3ce242a42cdd888c5a0">gridfire::rates::weak::WeakReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad85ca288289b25d482cbb8e3ff270028">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="ac7b08c61cdc97268b9442afec4d08dad" name="ac7b08c61cdc97268b9442afec4d08dad"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac7b08c61cdc97268b9442afec4d08dad">&#9670;&#160;</a></span>reactants()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::reaction::Reaction::reactants </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Ordered list of reactant species. </p>
+<p>Multiplicity is represented by duplicates, e.g., (p, p) would list H1 twice. </p><dl class="section return"><dt>Returns</dt><dd>Const reference to the vector of reactants. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1362d46630f30203027093e35883d1b1">gridfire::rates::weak::WeakReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad095aba46860fec0e68386bf04f7f142">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="ad49f4cad024db72c966d949c75f1ce4d" name="ad49f4cad024db72c966d949c75f1ce4d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad49f4cad024db72c966d949c75f1ce4d">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::unordered_map&lt; fourdst::atomic::Species, int &gt; gridfire::reaction::Reaction::stoichiometry </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Full stoichiometry map for this reaction. </p>
+<p>Coefficients are negative for reactants and positive for products; multiplicity is reflected in the magnitude (e.g., 2H -&gt; He gives H: -2, He: +1). </p><dl class="section return"><dt>Returns</dt><dd>Map from Species to integer stoichiometric coefficient. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a8bf7dc26d9f1375625df99bceba08a44">gridfire::rates::weak::WeakReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0f629cbfe95dc5643b5e3724be0db2f9">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="ab7888b57507d6d27de6e5fcaea40fff5" name="ab7888b57507d6d27de6e5fcaea40fff5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab7888b57507d6d27de6e5fcaea40fff5">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual int gridfire::reaction::Reaction::stoichiometry </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Stoichiometric coefficient for a particular species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>Species for which to query the coefficient. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Negative for reactants, positive for products, zero if absent. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1f4acfdb39bb861aaee9f3f28cfc406e">gridfire::rates::weak::WeakReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a57b2695d152360a6ba08776cc760e3a1">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="a7f2590eee9f0dfb7b73cd92170a844b7" name="a7f2590eee9f0dfb7b73cd92170a844b7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7f2590eee9f0dfb7b73cd92170a844b7">&#9670;&#160;</a></span>type()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a> gridfire::reaction::Reaction::type </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Category of this reaction (e.g., REACLIB, WEAK, LOGICAL_REACLIB). </p>
+<dl class="section return"><dt>Returns</dt><dd>Enumerated reaction type for runtime dispatch and filtering. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aade329265a26bdc005c0793ba7a36ab2">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#acbfa2d4e23dff6641be21cc1e754be15">gridfire::reaction::LogicalReaclibReaction</a>, and <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a3c0fbdd07f9a837bd031c5bdc58e0e8f">gridfire::reaction::ReaclibReaction</a>.</p>
 
 </div>
 </div>
@@ -1191,248 +1133,8 @@ template&lt;typename T&gt; </div>
 
 </div>
 </div>
-<h2 class="groupheader">Member Data Documentation</h2>
-<a id="a16f9cbb6269817099d3dc07d4e63da7b" name="a16f9cbb6269817099d3dc07d4e63da7b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a16f9cbb6269817099d3dc07d4e63da7b">&#9670;&#160;</a></span>m_chapter</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">int gridfire::reaction::Reaction::m_chapter</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Chapter number from the REACLIB database, defining the reaction structure. </p>
-
-</div>
-</div>
-<a id="a5c685e5a736b51799e5b9f6746c4126b" name="a5c685e5a736b51799e5b9f6746c4126b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5c685e5a736b51799e5b9f6746c4126b">&#9670;&#160;</a></span>m_id</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::string gridfire::reaction::Reaction::m_id</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Unique identifier for the reaction (e.g., "h1+h1=&gt;h2+e+nu"). </p>
-
-</div>
-</div>
-<a id="a7044d0a1d59d85502ce554e4ec2167e4" name="a7044d0a1d59d85502ce554e4ec2167e4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7044d0a1d59d85502ce554e4ec2167e4">&#9670;&#160;</a></span>m_logger</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">quill::Logger* gridfire::reaction::Reaction::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-</div>
-</div>
-<a id="a6124aa9fc2306349e1dd879a37923248" name="a6124aa9fc2306349e1dd879a37923248"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6124aa9fc2306349e1dd879a37923248">&#9670;&#160;</a></span>m_peName</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::string gridfire::reaction::Reaction::m_peName</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Name of the reaction in (projectile, ejectile) notation (e.g. "p(p,g)d"). </p>
-
-</div>
-</div>
-<a id="a4b5607ed413acdf29539b8a57461e49e" name="a4b5607ed413acdf29539b8a57461e49e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4b5607ed413acdf29539b8a57461e49e">&#9670;&#160;</a></span>m_products</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::vector&lt;fourdst::atomic::Species&gt; gridfire::reaction::Reaction::m_products</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Products of the reaction. </p>
-
-</div>
-</div>
-<a id="a59122a2898bb9af640cc3e9aeb49028b" name="a59122a2898bb9af640cc3e9aeb49028b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a59122a2898bb9af640cc3e9aeb49028b">&#9670;&#160;</a></span>m_qValue</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double gridfire::reaction::Reaction::m_qValue = 0.0</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Q-value of the reaction in MeV. </p>
-
-</div>
-</div>
-<a id="aa61a9a024d7c4ff66a351ccd0277ec72" name="aa61a9a024d7c4ff66a351ccd0277ec72"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa61a9a024d7c4ff66a351ccd0277ec72">&#9670;&#160;</a></span>m_rateCoefficients</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname"><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> gridfire::reaction::Reaction::m_rateCoefficients</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>The seven rate coefficients. </p>
-
-</div>
-</div>
-<a id="a87a065b3c7806bcdb5eadb7de2978a11" name="a87a065b3c7806bcdb5eadb7de2978a11"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a87a065b3c7806bcdb5eadb7de2978a11">&#9670;&#160;</a></span>m_reactants</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::vector&lt;fourdst::atomic::Species&gt; gridfire::reaction::Reaction::m_reactants</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Reactants of the reaction. </p>
-
-</div>
-</div>
-<a id="a0b0b9ac498080aae91ffd466d1ae85a9" name="a0b0b9ac498080aae91ffd466d1ae85a9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0b0b9ac498080aae91ffd466d1ae85a9">&#9670;&#160;</a></span>m_reverse</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">bool gridfire::reaction::Reaction::m_reverse = false</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Flag indicating if this is a reverse reaction rate. </p>
-
-</div>
-</div>
-<a id="a0185c6be5465d113f25e00aee1297cd6" name="a0185c6be5465d113f25e00aee1297cd6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0185c6be5465d113f25e00aee1297cd6">&#9670;&#160;</a></span>m_sourceLabel</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::string gridfire::reaction::Reaction::m_sourceLabel</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel protected">protected</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Source label for the rate data (e.g., "wc12w", "st08"). </p>
-
-</div>
-</div>
-<hr/>The documentation for this class was generated from the following files:<ul>
+<hr/>The documentation for this class was generated from the following file:<ul>
 <li>src/include/gridfire/reaction/<a class="el" href="reaction_8h.html">reaction.h</a></li>
-<li>src/lib/reaction/<a class="el" href="reaction_8cpp.html">reaction.cpp</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaction.js b/docs/html/classgridfire_1_1reaction_1_1_reaction.js
index 2e4c631c..2e772bd1 100644
--- a/docs/html/classgridfire_1_1reaction_1_1_reaction.js
+++ b/docs/html/classgridfire_1_1reaction_1_1_reaction.js
@@ -1,42 +1,27 @@
 var classgridfire_1_1reaction_1_1_reaction =
 [
     [ "~Reaction", "classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a", null ],
-    [ "Reaction", "classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c", null ],
-    [ "all_species", "classgridfire_1_1reaction_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224", null ],
-    [ "calculate_forward_rate_log_derivative", "classgridfire_1_1reaction_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061", null ],
-    [ "calculate_rate", "classgridfire_1_1reaction_1_1_reaction.html#a735192a42f72cd68f289493753e1a616", null ],
-    [ "calculate_rate", "classgridfire_1_1reaction_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec", null ],
-    [ "calculate_rate", "classgridfire_1_1reaction_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af", null ],
-    [ "chapter", "classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629", null ],
-    [ "contains", "classgridfire_1_1reaction_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b", null ],
-    [ "contains_product", "classgridfire_1_1reaction_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2", null ],
-    [ "contains_reactant", "classgridfire_1_1reaction_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45", null ],
-    [ "excess_energy", "classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5", null ],
-    [ "hash", "classgridfire_1_1reaction_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5", null ],
-    [ "id", "classgridfire_1_1reaction_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905", null ],
-    [ "is_reverse", "classgridfire_1_1reaction_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba", null ],
-    [ "num_species", "classgridfire_1_1reaction_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97", null ],
-    [ "operator!=", "classgridfire_1_1reaction_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51", null ],
-    [ "operator==", "classgridfire_1_1reaction_1_1_reaction.html#ac426457cf0a54a15b206549422083bac", null ],
-    [ "peName", "classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97", null ],
-    [ "product_species", "classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c", null ],
-    [ "products", "classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02", null ],
-    [ "qValue", "classgridfire_1_1reaction_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8", null ],
-    [ "rateCoefficients", "classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e", null ],
-    [ "reactant_species", "classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923", null ],
-    [ "reactants", "classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b", null ],
-    [ "sourceLabel", "classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0", null ],
-    [ "stoichiometry", "classgridfire_1_1reaction_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3", null ],
-    [ "stoichiometry", "classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac", null ],
-    [ "operator<<", "classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8", null ],
-    [ "m_chapter", "classgridfire_1_1reaction_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b", null ],
-    [ "m_id", "classgridfire_1_1reaction_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b", null ],
-    [ "m_logger", "classgridfire_1_1reaction_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4", null ],
-    [ "m_peName", "classgridfire_1_1reaction_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248", null ],
-    [ "m_products", "classgridfire_1_1reaction_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e", null ],
-    [ "m_qValue", "classgridfire_1_1reaction_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b", null ],
-    [ "m_rateCoefficients", "classgridfire_1_1reaction_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72", null ],
-    [ "m_reactants", "classgridfire_1_1reaction_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11", null ],
-    [ "m_reverse", "classgridfire_1_1reaction_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9", null ],
-    [ "m_sourceLabel", "classgridfire_1_1reaction_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6", null ]
+    [ "all_species", "classgridfire_1_1reaction_1_1_reaction.html#aa13cd9097229fcc99128d9286b8f17e6", null ],
+    [ "calculate_energy_generation_rate", "classgridfire_1_1reaction_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80", null ],
+    [ "calculate_energy_generation_rate", "classgridfire_1_1reaction_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd", null ],
+    [ "calculate_log_rate_partial_deriv_wrt_T9", "classgridfire_1_1reaction_1_1_reaction.html#aa2b615e764bb005e526ca9327319c735", null ],
+    [ "calculate_rate", "classgridfire_1_1reaction_1_1_reaction.html#af8303d67df61fc9e31ce054f0e8a3e14", null ],
+    [ "calculate_rate", "classgridfire_1_1reaction_1_1_reaction.html#a83c121480533593adfd68c4a67a649f1", null ],
+    [ "clone", "classgridfire_1_1reaction_1_1_reaction.html#ab95ce7fb022a9432bdc77f14679221ee", null ],
+    [ "contains", "classgridfire_1_1reaction_1_1_reaction.html#a768db057d358240d4825c21869af0792", null ],
+    [ "contains_product", "classgridfire_1_1reaction_1_1_reaction.html#a2708d2e8f42159df6605a5948b13c4c5", null ],
+    [ "contains_reactant", "classgridfire_1_1reaction_1_1_reaction.html#ab28bf4f9417ecabcc8350bae449fedd5", null ],
+    [ "hash", "classgridfire_1_1reaction_1_1_reaction.html#a7ba8c18cd5445aa3499a6fd351183f7a", null ],
+    [ "id", "classgridfire_1_1reaction_1_1_reaction.html#a94b92308b9619ec20c690e55157786ba", null ],
+    [ "is_reverse", "classgridfire_1_1reaction_1_1_reaction.html#a3906a668410e02239f9031b5fc580214", null ],
+    [ "num_species", "classgridfire_1_1reaction_1_1_reaction.html#ae2a1b0395ac127c792a8049cd0bcc249", null ],
+    [ "product_species", "classgridfire_1_1reaction_1_1_reaction.html#a0d16572ae2b664374d32ee6c4e22123a", null ],
+    [ "products", "classgridfire_1_1reaction_1_1_reaction.html#a3d7451045d8df41ea98b5e419e0e5ab0", null ],
+    [ "qValue", "classgridfire_1_1reaction_1_1_reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c", null ],
+    [ "reactant_species", "classgridfire_1_1reaction_1_1_reaction.html#a82c14096308cdc9126ab6d9667febcd2", null ],
+    [ "reactants", "classgridfire_1_1reaction_1_1_reaction.html#ac7b08c61cdc97268b9442afec4d08dad", null ],
+    [ "stoichiometry", "classgridfire_1_1reaction_1_1_reaction.html#ad49f4cad024db72c966d949c75f1ce4d", null ],
+    [ "stoichiometry", "classgridfire_1_1reaction_1_1_reaction.html#ab7888b57507d6d27de6e5fcaea40fff5", null ],
+    [ "type", "classgridfire_1_1reaction_1_1_reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7", null ],
+    [ "operator<<", "classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaction.png b/docs/html/classgridfire_1_1reaction_1_1_reaction.png
index a129cb17e48a62b854a4992e897744485cc8daec..3cdc1f2793da33ce05dbb732d085dd50e0cb76a5 100644
GIT binary patch
literal 1678
zcmcJQc~H|w6vq=Ns6hc8L=XXsA_mZaBNd?%Koo)q5{_Uarz2EC2!dRK$sndcl`C?I
z0#&074U$42$UXkzRl-#{l=*Q53dj)>2!u#T(jRu(>R+AdOn2t(es<r^?%SR3+s!!V
z?z|1L8v%pCwqabHurL^02yyymWvE77#dJW8-Z?k#QwoIw!VmK+vDrYmwFNRtr?BJ0
z*w`2}Zq?~ahkRSEV%@!9Q2$dorgX0l22<6=I5~JH!1*PF!W-6_Dz~`DOQj0R;*U!%
zd&7Iqhs8IB9Zcy-^rVY+j_uO@A$YT@{RLG}{S=~}Z%>Z`)tx?v`l31a@?gJ(h^91x
zBy~4uISf2xfMf9uu+NATAW7W-*Ki_nSt43|5(O@V1#o)>jkP4RXk^PM@dlf=bW}Dp
z*S*5FVF+XTp(V5;!Qr8RHUH)2+GB(LE73mredXh!zi=Pv3!a0XaYS$!3Sc4B2dweD
za+~><LaeG}&GSqcgK-+jA$HS@rk&Jud{-)AmU4K#C7eBc5(+hP%~xXCTD62t&@VFE
zGZvPRq%j&mCb?4By67F`hsDIz9DvwV#u&9p5#S_wH{$K4_Ml551K;>wQ4^2x{bH`+
ztiS~mDkw&dR9plV+n|%hiv}Ln@D*F3O{I55l|%&^!(;2GL*b{md;uSTv|ybOcn&N%
zU(H@gGgV7nGmUGUseJQms`3lotZk;U6GS(SVwJx#qW-HT=W{2cGt}%Y9GTV7O6mW_
z0`IR|XH77pbYEXt-x=aT&ZD2p1B{Vc$O|;3TnIG(hU-8Y|L9h3$^N=TUEx8=fCD2X
z>A8grgS|DE+C}bGLm#JLUM?mC>5I-^li$5t=Fe+6q#yugR^-qwQkBq)#J&jmkal&3
zMIU2$qWW)TRb^tnE#6fSkFP)Tt2l-co7Z56U%&%;4s*4PFgyi(beT@;qkBm}k-*?R
z>tm%?KqNV2%7Z#uT%6ze+GcR}T7yl23nwn(h+605os*NkJ%?-heU5u$Y<f)ASs&YU
z{A6%6W596GQiKEUkpgymdzlop2q&I+_u)sv8{FDSkJP`5s~Ki(l93OuFRy#3&%a0}
zhfb9t%A7r?%8jR=?yFQ1cQ5Ex9BSTPD@fq;3vU`uQKEyUr$xLDN)Ywf1mm&48>yfn
zGln}L^(}U|6vA*86U>?|m*goW_qsJYnn@a?#q(z`r^)y)&CFH(wvdQkCANdvn-xKF
ze`P67EUc$`T<_l!p`dzXTzbd#j+V7e^BZzG?e9y8dU2K&iOu|<tXRbEg5XNLLkzrB
zTP|KtQuQT7;P6;{i>h5QbeX7d*SCs0?mSA2oVgl>S;OB4ImR;@i$@<T&W_5EGE|o$
z(Y27?=1hTV^l3yP9m-q`!s#z~;Ulrmx@eBzO;~4D!(3pk?J9fW=?;iZ>6}U0D>#q?
zz{jIjN?ySqLgbj+2#2KczguhfKf;8KA92MV#6H`vVnjWI-TN8PXLZ=U7UuD^K91G8
zLuTmWgQ%a;8=_2-ay0{;U9o4OL#k%?W8UsFz|9aMW>!3xTbd;Y0-ZKoWxKf7F{AQn
z5L`MB=@0~mT-$q>W0>f7;H){0ATg>Bf1)+=J;k5L?c}^k+lS#14zv*bMrKT#8Uu{;
zjaMq3>C%_{Wb>s4v-O5r#1&^>Xbx3KTl4<(Ae{-R13)sPUDP%78=3OEb}nE`?MBt7
z2L`Mbuc3Fee!~(h#!Aai(*P+hp-x**6}^4LeTE4NvfX%3Pb9Z-!gEa34d1XzL={5j
z0uR}&ZPx<)`7oj4QKYWL-kH`1+WdKRnW-RB-&e&8^PqZIo?OXCXGPrJPh|oc7(7jW
zsdXe6fu85lmUnK@X!$a#P0oxj0#=d!G^Ly`vV0@mxBGvRgB%{FgsS$>aNPK3V3<?x
KPF0RUH~s(_k}#eC

delta 730
zcmV<00ww*94T=UKiBL{Q4GJ0x0000DNk~Le0002V0000`2m=5B0EBU&ypbV3e*%?B
zL_t(|0qvdJuEHP`M28_U^Z#Fb?1jRH(u+q85=@u0lntzMdxdk(bpf0tb-*x@q_!9)
zlGGNLP1a&l;#_!=q$@m&S0d(JN0Roahe=Y#-7&dUdHxwBDPw+9dwr{=W0UpkPygFs
z%-=BNE>E%Ln3E>c-x9yZ#hA_He_og*WgME!wJiqgU_=XZAMQ+!O_B#ErPqFWImIh&
zT9WoSGfA<Dp)7A^qU}-|6V}PiFiFbzuZdZ(Y0i?Io4gh#Nf~b#ld`-GIW@5bKQ$)l
z(C6#qXm%Y<_?pR$FiFa|xOb%oi80t_d6pA4o-k+3CM3D!D)z3!FiG0wfAl<g;q;KC
z?{jILNK*5h&90vjIiFpU^b-sdNotE>B1vuWG;z+k9sq!k^8kP@=*Hyn=tZR)lcz{0
zD*c#@y$b+ZW0(LyTMQEbXp3P20Btc$0H7^~2>`UkFadzJ7$yMF7Q+Mp+G3ahKwAtG
z0BDP00sw6>OaS0I-h2OPe;(d@|7qY!vIB+*Nw&o>A<4GbHE}U<E<BOs6`sW_5xdz%
z<`h5uNOF%_{YPU`?-NPZsE1suEVNoHUCWOq>(`(Dx51b{O~_rIVudj$O{TvkevOMU
z;chD)dTpvnP43jcnaqWj`q#>$g}L8aPjhUNJUBAFwk~FGi}?K)e{_sj+Q-Z!#U_Tb
zyqSr6y(^br(Qy;Ju9I8!-!U=kFwI$#f17O8<SkyR|K^z3g;#d%KPLOL>vH|&I>~1-
z9cd`ckLK~A$s5+mj!E3R(u2epn7t+6RJNTg+gsAs<7BDsU0YuH;-LQGJbB^tAj#Kx
zXM@E$A<3`s?grD@F!kjjd2@qic9G=IGE7LaErtn6w#C!Ld+&ST4}_AZtI>jUC;$Ke
M07*qoM6N<$g8pA!N&o-=

diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaction_set-members.html b/docs/html/classgridfire_1_1reaction_1_1_reaction_set-members.html
index cbe00656..fdb44a00 100644
--- a/docs/html/classgridfire_1_1reaction_1_1_reaction_set-members.html
+++ b/docs/html/classgridfire_1_1reaction_1_1_reaction_set-members.html
@@ -29,7 +29,7 @@
  <tbody>
  <tr id="projectrow">
   <td id="projectalign">
-   <div id="projectname">GridFire<span id="projectnumber">&#160;0.0.1a</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
    </div>
    <div id="projectbrief">General Purpose Nuclear Network</div>
   </td>
@@ -105,32 +105,36 @@ $(function(){initNavTree('classgridfire_1_1reaction_1_1_reaction_set.html','');
 
 <p>This is the complete list of members for <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a>, including all inherited members.</p>
 <table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#acea41c2ffb010e46bc5cf56f5f244fac">add_reaction</a>(Reaction reaction)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613">begin</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#adb73fe9ff0178359409e2bea46a620c2">begin</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300">clear</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387">contains</a>(const std::string_view &amp;id) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a2f6b165c86634a68f35032c2267255f8">contains</a>(const Reaction &amp;reaction) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e">contains_product</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2">contains_reactant</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a">contains_species</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987">end</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a436f9c4b8f8a4e115b19728d57d8e105">end</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a3209bb7c2a41deabaab059f6c671776f">hash</a>(uint64_t seed=0) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1">add_reaction</a>(const Reaction &amp;reaction)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#ad7e95562ea0860bf492b447341f41fb5">add_reaction</a>(std::unique_ptr&lt; Reaction &gt; &amp;&amp;reaction)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613">begin</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#adb73fe9ff0178359409e2bea46a620c2">begin</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300">clear</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387">contains</a>(const std::string_view &amp;id) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a2f6b165c86634a68f35032c2267255f8">contains</a>(const Reaction &amp;reaction) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e">contains_product</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2">contains_reactant</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a">contains_species</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987">end</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a436f9c4b8f8a4e115b19728d57d8e105">end</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b">getReactionSetSpecies</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99">hash</a>(uint64_t seed) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111">m_id</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#ad3e2715e9e4d6b4f1dc54b969a1322f4">m_reactionNameMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#aaa3c40cb22b8bd056cf62b047ae4937c">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44">m_reactionNameMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8">operator!=</a>(const ReactionSet &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a">operator=</a>(const ReactionSet &amp;other)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135">operator==</a>(const ReactionSet &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b">operator[]</a>(size_t index) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a896b4e492ef596d9174aeda4b59c46cd">operator[]</a>(const std::string_view &amp;id) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#afc40e3783576867229fad3115b3d39d3">ReactionSet</a>(std::vector&lt; Reaction &gt; reactions)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#acfe2341ae1f016ad82098b6f5a1efc45">ReactionSet</a>(const ReactionSet &amp;other)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd">remove_reaction</a>(const Reaction &amp;reaction)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a6b07a81a3500e4e91d3bcd336b66e35d">size</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a64ca23fc5bdc41b868c3fbeb5aef6d98">~ReactionSet</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20">operator&lt;&lt;</a>(std::ostream &amp;os, const ReactionSet &amp;rs)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a">operator=</a>(const ReactionSet &amp;other)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135">operator==</a>(const ReactionSet &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b">operator[]</a>(size_t index) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a896b4e492ef596d9174aeda4b59c46cd">operator[]</a>(const std::string_view &amp;id) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de">ReactionSet</a>(std::vector&lt; std::unique_ptr&lt; Reaction &gt; &gt; &amp;&amp;reactions)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a789dee5d93810b85062e59508fe0adea">ReactionSet</a>(const std::vector&lt; Reaction * &gt; &amp;reactions)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#ab9edff40316b42ce41b2f895962c1041">ReactionSet</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#acfe2341ae1f016ad82098b6f5a1efc45">ReactionSet</a>(const ReactionSet &amp;other)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd">remove_reaction</a>(const Reaction &amp;reaction)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf">size</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaction_set.html b/docs/html/classgridfire_1_1reaction_1_1_reaction_set.html
index 901964a4..d177acf5 100644
--- a/docs/html/classgridfire_1_1reaction_1_1_reaction_set.html
+++ b/docs/html/classgridfire_1_1reaction_1_1_reaction_set.html
@@ -29,7 +29,7 @@
  <tbody>
  <tr id="projectrow">
   <td id="projectalign">
-   <div id="projectname">GridFire<span id="projectnumber">&#160;0.0.1a</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
    </div>
    <div id="projectbrief">General Purpose Nuclear Network</div>
   </td>
@@ -102,43 +102,35 @@ $(function(){initNavTree('classgridfire_1_1reaction_1_1_reaction_set.html','');
   <div class="summary">
 <a href="#pub-methods">Public Member Functions</a> &#124;
 <a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
 <a href="classgridfire_1_1reaction_1_1_reaction_set-members.html">List of all members</a>  </div>
-  <div class="headertitle"><div class="title">gridfire::reaction::ReactionSet Class Reference</div></div>
+  <div class="headertitle"><div class="title">gridfire::reaction::ReactionSet Class Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
 </div><!--header-->
 <div class="contents">
 
-<p>A collection of <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> objects.  
- <a href="#details">More...</a></p>
-
-<p><code>#include &lt;<a class="el" href="reaction_8h_source.html">reaction.h</a>&gt;</code></p>
-<div class="dynheader">
-Inheritance diagram for gridfire::reaction::ReactionSet:</div>
-<div class="dyncontent">
- <div class="center">
-  <img src="classgridfire_1_1reaction_1_1_reaction_set.png" usemap="#gridfire::reaction::ReactionSet_map" alt=""/>
-  <map id="gridfire::reaction::ReactionSet_map" name="gridfire::reaction::ReactionSet_map">
-<area href="classgridfire_1_1reaction_1_1_logical_reaction_set.html" title="A collection of LogicalReaction objects." alt="gridfire::reaction::LogicalReactionSet" shape="rect" coords="0,56,219,80"/>
-  </map>
-</div></div>
+<p><code>#include &lt;reaction.h&gt;</code></p>
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
 Public Member Functions</h2></td></tr>
-<tr class="memitem:afc40e3783576867229fad3115b3d39d3" id="r_afc40e3783576867229fad3115b3d39d3"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afc40e3783576867229fad3115b3d39d3">ReactionSet</a> (std::vector&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt; reactions)</td></tr>
-<tr class="memdesc:afc40e3783576867229fad3115b3d39d3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html" title="A collection of Reaction objects.">ReactionSet</a> from a vector of reactions.  <br /></td></tr>
-<tr class="separator:afc40e3783576867229fad3115b3d39d3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9a63306b92e23e3651c955ab614084de" id="r_a9a63306b92e23e3651c955ab614084de"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9a63306b92e23e3651c955ab614084de">ReactionSet</a> (std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt; &gt; &amp;&amp;reactions)</td></tr>
+<tr class="memdesc:a9a63306b92e23e3651c955ab614084de"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> from a vector of reactions.  <br /></td></tr>
+<tr class="separator:a9a63306b92e23e3651c955ab614084de"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a789dee5d93810b85062e59508fe0adea" id="r_a789dee5d93810b85062e59508fe0adea"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a789dee5d93810b85062e59508fe0adea">ReactionSet</a> (const std::vector&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> * &gt; &amp;reactions)</td></tr>
+<tr class="separator:a789dee5d93810b85062e59508fe0adea"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab9edff40316b42ce41b2f895962c1041" id="r_ab9edff40316b42ce41b2f895962c1041"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab9edff40316b42ce41b2f895962c1041">ReactionSet</a> ()</td></tr>
+<tr class="separator:ab9edff40316b42ce41b2f895962c1041"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:acfe2341ae1f016ad82098b6f5a1efc45" id="r_acfe2341ae1f016ad82098b6f5a1efc45"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#acfe2341ae1f016ad82098b6f5a1efc45">ReactionSet</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;other)</td></tr>
 <tr class="memdesc:acfe2341ae1f016ad82098b6f5a1efc45"><td class="mdescLeft">&#160;</td><td class="mdescRight">Copy constructor.  <br /></td></tr>
 <tr class="separator:acfe2341ae1f016ad82098b6f5a1efc45"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:aac890bf7fdf689890d765ff67489520a" id="r_aac890bf7fdf689890d765ff67489520a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aac890bf7fdf689890d765ff67489520a">operator=</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;other)</td></tr>
 <tr class="memdesc:aac890bf7fdf689890d765ff67489520a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Copy assignment operator.  <br /></td></tr>
 <tr class="separator:aac890bf7fdf689890d765ff67489520a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a64ca23fc5bdc41b868c3fbeb5aef6d98" id="r_a64ca23fc5bdc41b868c3fbeb5aef6d98"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a64ca23fc5bdc41b868c3fbeb5aef6d98">~ReactionSet</a> ()=default</td></tr>
-<tr class="memdesc:a64ca23fc5bdc41b868c3fbeb5aef6d98"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
-<tr class="separator:a64ca23fc5bdc41b868c3fbeb5aef6d98"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acea41c2ffb010e46bc5cf56f5f244fac" id="r_acea41c2ffb010e46bc5cf56f5f244fac"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#acea41c2ffb010e46bc5cf56f5f244fac">add_reaction</a> (<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> reaction)</td></tr>
-<tr class="memdesc:acea41c2ffb010e46bc5cf56f5f244fac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Adds a reaction to the set.  <br /></td></tr>
-<tr class="separator:acea41c2ffb010e46bc5cf56f5f244fac"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1177193b1e46b4e5be630028883ab8dd" id="r_a1177193b1e46b4e5be630028883ab8dd"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1177193b1e46b4e5be630028883ab8dd">remove_reaction</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;reaction)</td></tr>
+<tr class="memitem:ad9dbc77e93467c95ebda908b53e9a9d1" id="r_ad9dbc77e93467c95ebda908b53e9a9d1"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad9dbc77e93467c95ebda908b53e9a9d1">add_reaction</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;reaction)</td></tr>
+<tr class="memdesc:ad9dbc77e93467c95ebda908b53e9a9d1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Adds a reaction to the set.  <br /></td></tr>
+<tr class="separator:ad9dbc77e93467c95ebda908b53e9a9d1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad7e95562ea0860bf492b447341f41fb5" id="r_ad7e95562ea0860bf492b447341f41fb5"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad7e95562ea0860bf492b447341f41fb5">add_reaction</a> (std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt; &amp;&amp;reaction)</td></tr>
+<tr class="separator:ad7e95562ea0860bf492b447341f41fb5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1177193b1e46b4e5be630028883ab8dd" id="r_a1177193b1e46b4e5be630028883ab8dd"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1177193b1e46b4e5be630028883ab8dd">remove_reaction</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;reaction)</td></tr>
 <tr class="memdesc:a1177193b1e46b4e5be630028883ab8dd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Removes a reaction from the set.  <br /></td></tr>
 <tr class="separator:a1177193b1e46b4e5be630028883ab8dd"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:ae5f8078e77a700a8356487fbd69ba387" id="r_ae5f8078e77a700a8356487fbd69ba387"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae5f8078e77a700a8356487fbd69ba387">contains</a> (const std::string_view &amp;id) const</td></tr>
@@ -147,9 +139,9 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:a2f6b165c86634a68f35032c2267255f8" id="r_a2f6b165c86634a68f35032c2267255f8"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2f6b165c86634a68f35032c2267255f8">contains</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;reaction) const</td></tr>
 <tr class="memdesc:a2f6b165c86634a68f35032c2267255f8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the set contains the given reaction.  <br /></td></tr>
 <tr class="separator:a2f6b165c86634a68f35032c2267255f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6b07a81a3500e4e91d3bcd336b66e35d" id="r_a6b07a81a3500e4e91d3bcd336b66e35d"><td class="memItemLeft" align="right" valign="top">virtual size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6b07a81a3500e4e91d3bcd336b66e35d">size</a> () const</td></tr>
-<tr class="memdesc:a6b07a81a3500e4e91d3bcd336b66e35d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the number of reactions in the set.  <br /></td></tr>
-<tr class="separator:a6b07a81a3500e4e91d3bcd336b66e35d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af14cf34d7367cb6a6be5191724c2d4cf" id="r_af14cf34d7367cb6a6be5191724c2d4cf"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af14cf34d7367cb6a6be5191724c2d4cf">size</a> () const</td></tr>
+<tr class="memdesc:af14cf34d7367cb6a6be5191724c2d4cf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the number of reactions in the set.  <br /></td></tr>
+<tr class="separator:af14cf34d7367cb6a6be5191724c2d4cf"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:aa8e0d65aafc6e0320690b4906e1bf300" id="r_aa8e0d65aafc6e0320690b4906e1bf300"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa8e0d65aafc6e0320690b4906e1bf300">clear</a> ()</td></tr>
 <tr class="memdesc:aa8e0d65aafc6e0320690b4906e1bf300"><td class="mdescLeft">&#160;</td><td class="mdescRight">Removes all reactions from the set.  <br /></td></tr>
 <tr class="separator:aa8e0d65aafc6e0320690b4906e1bf300"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -162,7 +154,7 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:a4bdf50219d686a6cbc0b3cc5365dc18e" id="r_a4bdf50219d686a6cbc0b3cc5365dc18e"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4bdf50219d686a6cbc0b3cc5365dc18e">contains_product</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
 <tr class="memdesc:a4bdf50219d686a6cbc0b3cc5365dc18e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if any reaction in the set contains the given species as a product.  <br /></td></tr>
 <tr class="separator:a4bdf50219d686a6cbc0b3cc5365dc18e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4057f74ae647b691f4f61f150553c52b" id="r_a4057f74ae647b691f4f61f150553c52b"><td class="memItemLeft" align="right" valign="top">virtual const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4057f74ae647b691f4f61f150553c52b">operator[]</a> (size_t index) const</td></tr>
+<tr class="memitem:a4057f74ae647b691f4f61f150553c52b" id="r_a4057f74ae647b691f4f61f150553c52b"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4057f74ae647b691f4f61f150553c52b">operator[]</a> (size_t index) const</td></tr>
 <tr class="memdesc:a4057f74ae647b691f4f61f150553c52b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Accesses a reaction by its index.  <br /></td></tr>
 <tr class="separator:a4057f74ae647b691f4f61f150553c52b"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a896b4e492ef596d9174aeda4b59c46cd" id="r_a896b4e492ef596d9174aeda4b59c46cd"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a896b4e492ef596d9174aeda4b59c46cd">operator[]</a> (const std::string_view &amp;id) const</td></tr>
@@ -174,9 +166,11 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:a529189f464aebc6b5ac5c717f70e14b8" id="r_a529189f464aebc6b5ac5c717f70e14b8"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a529189f464aebc6b5ac5c717f70e14b8">operator!=</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;other) const</td></tr>
 <tr class="memdesc:a529189f464aebc6b5ac5c717f70e14b8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compares this set with another for inequality.  <br /></td></tr>
 <tr class="separator:a529189f464aebc6b5ac5c717f70e14b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3209bb7c2a41deabaab059f6c671776f" id="r_a3209bb7c2a41deabaab059f6c671776f"><td class="memItemLeft" align="right" valign="top">uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3209bb7c2a41deabaab059f6c671776f">hash</a> (uint64_t seed=0) const</td></tr>
-<tr class="memdesc:a3209bb7c2a41deabaab059f6c671776f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes a hash for the entire set.  <br /></td></tr>
-<tr class="separator:a3209bb7c2a41deabaab059f6c671776f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad28907fc08de978461d68cc5b77a3a99" id="r_ad28907fc08de978461d68cc5b77a3a99"><td class="memItemLeft" align="right" valign="top">uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad28907fc08de978461d68cc5b77a3a99">hash</a> (uint64_t seed) const</td></tr>
+<tr class="memdesc:ad28907fc08de978461d68cc5b77a3a99"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes a hash for the entire set.  <br /></td></tr>
+<tr class="separator:ad28907fc08de978461d68cc5b77a3a99"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a133ad8cca6a75d31ef8efe67801aef1b" id="r_a133ad8cca6a75d31ef8efe67801aef1b"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a133ad8cca6a75d31ef8efe67801aef1b">getReactionSetSpecies</a> () const</td></tr>
+<tr class="separator:a133ad8cca6a75d31ef8efe67801aef1b"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr><td colspan="2"><div class="groupHeader">Iterators</div></td></tr>
 <tr><td colspan="2"><div class="groupText"><p>Provides iterators to loop over the reactions in the set. </p>
 </div></td></tr>
@@ -193,29 +187,22 @@ Public Member Functions</h2></td></tr>
 Private Attributes</h2></td></tr>
 <tr class="memitem:aff5ae284012009164d4b3033577709eb" id="r_aff5ae284012009164d4b3033577709eb"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aff5ae284012009164d4b3033577709eb">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
 <tr class="separator:aff5ae284012009164d4b3033577709eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaa3c40cb22b8bd056cf62b047ae4937c" id="r_aaa3c40cb22b8bd056cf62b047ae4937c"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aaa3c40cb22b8bd056cf62b047ae4937c">m_reactions</a></td></tr>
-<tr class="separator:aaa3c40cb22b8bd056cf62b047ae4937c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abd6feda1b3f65a6177904755581f6efe" id="r_abd6feda1b3f65a6177904755581f6efe"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abd6feda1b3f65a6177904755581f6efe">m_reactions</a></td></tr>
+<tr class="separator:abd6feda1b3f65a6177904755581f6efe"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:af92e3003b2a3606b48ab857cdedc3111" id="r_af92e3003b2a3606b48ab857cdedc3111"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af92e3003b2a3606b48ab857cdedc3111">m_id</a></td></tr>
 <tr class="separator:af92e3003b2a3606b48ab857cdedc3111"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad3e2715e9e4d6b4f1dc54b969a1322f4" id="r_ad3e2715e9e4d6b4f1dc54b969a1322f4"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; std::string, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad3e2715e9e4d6b4f1dc54b969a1322f4">m_reactionNameMap</a></td></tr>
-<tr class="memdesc:ad3e2715e9e4d6b4f1dc54b969a1322f4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps reaction IDs to <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> objects for quick lookup.  <br /></td></tr>
-<tr class="separator:ad3e2715e9e4d6b4f1dc54b969a1322f4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a62965c04447909462bb4f2112661ef44" id="r_a62965c04447909462bb4f2112661ef44"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; std::string, size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a62965c04447909462bb4f2112661ef44">m_reactionNameMap</a></td></tr>
+<tr class="memdesc:a62965c04447909462bb4f2112661ef44"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps reaction IDs to <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> objects for quick lookup.  <br /></td></tr>
+<tr class="separator:a62965c04447909462bb4f2112661ef44"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="friends" name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:a5a5e6ed364794f872c2c819536e24c20" id="r_a5a5e6ed364794f872c2c819536e24c20"><td class="memItemLeft" align="right" valign="top">std::ostream &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5a5e6ed364794f872c2c819536e24c20">operator&lt;&lt;</a> (std::ostream &amp;os, const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;rs)</td></tr>
+<tr class="separator:a5a5e6ed364794f872c2c819536e24c20"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>A collection of <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> objects. </p>
-<p>This class manages a set of individual <code><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a></code> objects, providing efficient lookup by ID and functionality to query the entire set.</p>
-<p>Example: </p><div class="fragment"><div class="line"><a class="code hl_function" href="#afc40e3783576867229fad3115b3d39d3">ReactionSet</a> my_set({reaction1, reaction2});</div>
-<div class="line">my_set.add_reaction(reaction3);</div>
-<div class="line"><span class="keywordflow">if</span> (my_set.contains(<span class="stringliteral">&quot;h1(p,g)h2&quot;</span>)) {</div>
-<div class="line">    <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a>&amp; r = my_set[<span class="stringliteral">&quot;h1(p,g)h2&quot;</span>];</div>
-<div class="line">}</div>
-<div class="ttc" id="aclassgridfire_1_1reaction_1_1_reaction_html"><div class="ttname"><a href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></div><div class="ttdoc">Represents a single nuclear reaction from a specific data source.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00071">reaction.h:71</a></div></div>
-<div class="ttc" id="aclassgridfire_1_1reaction_1_1_reaction_set_html_afc40e3783576867229fad3115b3d39d3"><div class="ttname"><a href="#afc40e3783576867229fad3115b3d39d3">gridfire::reaction::ReactionSet::ReactionSet</a></div><div class="ttdeci">ReactionSet(std::vector&lt; Reaction &gt; reactions)</div><div class="ttdoc">Constructs a ReactionSet from a vector of reactions.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8cpp_source.html#l00140">reaction.cpp:140</a></div></div>
-</div><!-- fragment --> 
-<p class="definition">Definition at line <a class="el" href="reaction_8h_source.html#l00307">307</a> of file <a class="el" href="reaction_8h_source.html">reaction.h</a>.</p>
-</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
-<a id="afc40e3783576867229fad3115b3d39d3" name="afc40e3783576867229fad3115b3d39d3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afc40e3783576867229fad3115b3d39d3">&#9670;&#160;</a></span>ReactionSet() <span class="overload">[1/2]</span></h2>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a9a63306b92e23e3651c955ab614084de" name="a9a63306b92e23e3651c955ab614084de"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9a63306b92e23e3651c955ab614084de">&#9670;&#160;</a></span>ReactionSet() <span class="overload">[1/4]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -226,7 +213,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">gridfire::reaction::ReactionSet::ReactionSet </td>
           <td>(</td>
-          <td class="paramtype">std::vector&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
+          <td class="paramtype">std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt; &gt; &amp;&amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -237,7 +224,7 @@ Private Attributes</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p>Constructs a <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html" title="A collection of Reaction objects.">ReactionSet</a> from a vector of reactions. </p>
+<p>Constructs a <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> from a vector of reactions. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
     <tr><td class="paramname">reactions</td><td>The initial vector of <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> objects. </td></tr>
@@ -245,12 +232,60 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p class="definition">Definition at line <a class="el" href="reaction_8cpp_source.html#l00140">140</a> of file <a class="el" href="reaction_8cpp_source.html">reaction.cpp</a>.</p>
+</div>
+</div>
+<a id="a789dee5d93810b85062e59508fe0adea" name="a789dee5d93810b85062e59508fe0adea"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a789dee5d93810b85062e59508fe0adea">&#9670;&#160;</a></span>ReactionSet() <span class="overload">[2/4]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::ReactionSet::ReactionSet </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> * &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel explicit">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab9edff40316b42ce41b2f895962c1041" name="ab9edff40316b42ce41b2f895962c1041"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab9edff40316b42ce41b2f895962c1041">&#9670;&#160;</a></span>ReactionSet() <span class="overload">[3/4]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::ReactionSet::ReactionSet </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel default">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
 
 </div>
 </div>
 <a id="acfe2341ae1f016ad82098b6f5a1efc45" name="acfe2341ae1f016ad82098b6f5a1efc45"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acfe2341ae1f016ad82098b6f5a1efc45">&#9670;&#160;</a></span>ReactionSet() <span class="overload">[2/2]</span></h2>
+<h2 class="memtitle"><span class="permalink"><a href="#acfe2341ae1f016ad82098b6f5a1efc45">&#9670;&#160;</a></span>ReactionSet() <span class="overload">[4/4]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -267,64 +302,27 @@ Private Attributes</h2></td></tr>
 <p>Copy constructor. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">other</td><td>The <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html" title="A collection of Reaction objects.">ReactionSet</a> to copy. </td></tr>
+    <tr><td class="paramname">other</td><td>The <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> to copy. </td></tr>
   </table>
   </dd>
 </dl>
 
-<p class="definition">Definition at line <a class="el" href="reaction_8cpp_source.html#l00154">154</a> of file <a class="el" href="reaction_8cpp_source.html">reaction.cpp</a>.</p>
-
-</div>
-</div>
-<a id="a64ca23fc5bdc41b868c3fbeb5aef6d98" name="a64ca23fc5bdc41b868c3fbeb5aef6d98"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a64ca23fc5bdc41b868c3fbeb5aef6d98">&#9670;&#160;</a></span>~ReactionSet()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">virtual gridfire::reaction::ReactionSet::~ReactionSet </td>
-          <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel virtual">virtual</span><span class="mlabel default">default</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Virtual destructor. </p>
-
 </div>
 </div>
 <h2 class="groupheader">Member Function Documentation</h2>
-<a id="acea41c2ffb010e46bc5cf56f5f244fac" name="acea41c2ffb010e46bc5cf56f5f244fac"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acea41c2ffb010e46bc5cf56f5f244fac">&#9670;&#160;</a></span>add_reaction()</h2>
+<a id="ad9dbc77e93467c95ebda908b53e9a9d1" name="ad9dbc77e93467c95ebda908b53e9a9d1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad9dbc77e93467c95ebda908b53e9a9d1">&#9670;&#160;</a></span>add_reaction() <span class="overload">[1/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
       <table class="memname">
         <tr>
           <td class="memname">void gridfire::reaction::ReactionSet::add_reaction </td>
           <td>(</td>
-          <td class="paramtype"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a></td>          <td class="paramname"><span class="paramname"><em>reaction</em></span></td><td>)</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reaction</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel virtual">virtual</span></span>  </td>
-  </tr>
-</table>
 </div><div class="memdoc">
 
 <p>Adds a reaction to the set. </p>
@@ -335,7 +333,22 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p class="definition">Definition at line <a class="el" href="reaction_8cpp_source.html#l00175">175</a> of file <a class="el" href="reaction_8cpp_source.html">reaction.cpp</a>.</p>
+</div>
+</div>
+<a id="ad7e95562ea0860bf492b447341f41fb5" name="ad7e95562ea0860bf492b447341f41fb5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad7e95562ea0860bf492b447341f41fb5">&#9670;&#160;</a></span>add_reaction() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::reaction::ReactionSet::add_reaction </td>
+          <td>(</td>
+          <td class="paramtype">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &gt; &amp;&amp;</td>          <td class="paramname"><span class="paramname"><em>reaction</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
 
 </div>
 </div>
@@ -362,8 +375,6 @@ Private Attributes</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p class="definition">Definition at line <a class="el" href="reaction_8h_source.html#l00435">435</a> of file <a class="el" href="reaction_8h_source.html">reaction.h</a>.</p>
-
 </div>
 </div>
 <a id="adb73fe9ff0178359409e2bea46a620c2" name="adb73fe9ff0178359409e2bea46a620c2"></a>
@@ -389,8 +400,6 @@ Private Attributes</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p class="definition">Definition at line <a class="el" href="reaction_8h_source.html#l00436">436</a> of file <a class="el" href="reaction_8h_source.html">reaction.h</a>.</p>
-
 </div>
 </div>
 <a id="aa8e0d65aafc6e0320690b4906e1bf300" name="aa8e0d65aafc6e0320690b4906e1bf300"></a>
@@ -410,8 +419,6 @@ Private Attributes</h2></td></tr>
 
 <p>Removes all reactions from the set. </p>
 
-<p class="definition">Definition at line <a class="el" href="reaction_8cpp_source.html#l00211">211</a> of file <a class="el" href="reaction_8cpp_source.html">reaction.cpp</a>.</p>
-
 </div>
 </div>
 <a id="a2f6b165c86634a68f35032c2267255f8" name="a2f6b165c86634a68f35032c2267255f8"></a>
@@ -446,8 +453,6 @@ Private Attributes</h2></td></tr>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>True if the reaction is in the set, false otherwise. </dd></dl>
 
-<p class="definition">Definition at line <a class="el" href="reaction_8cpp_source.html#l00202">202</a> of file <a class="el" href="reaction_8cpp_source.html">reaction.cpp</a>.</p>
-
 </div>
 </div>
 <a id="ae5f8078e77a700a8356487fbd69ba387" name="ae5f8078e77a700a8356487fbd69ba387"></a>
@@ -482,8 +487,6 @@ Private Attributes</h2></td></tr>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>True if the reaction is in the set, false otherwise. </dd></dl>
 
-<p class="definition">Definition at line <a class="el" href="reaction_8cpp_source.html#l00193">193</a> of file <a class="el" href="reaction_8cpp_source.html">reaction.cpp</a>.</p>
-
 </div>
 </div>
 <a id="a4bdf50219d686a6cbc0b3cc5365dc18e" name="a4bdf50219d686a6cbc0b3cc5365dc18e"></a>
@@ -518,8 +521,6 @@ Private Attributes</h2></td></tr>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>True if the species is a product in any reaction. </dd></dl>
 
-<p class="definition">Definition at line <a class="el" href="reaction_8cpp_source.html#l00234">234</a> of file <a class="el" href="reaction_8cpp_source.html">reaction.cpp</a>.</p>
-
 </div>
 </div>
 <a id="a256998eddf292f744d51cdc3e178d4c2" name="a256998eddf292f744d51cdc3e178d4c2"></a>
@@ -554,8 +555,6 @@ Private Attributes</h2></td></tr>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>True if the species is a reactant in any reaction. </dd></dl>
 
-<p class="definition">Definition at line <a class="el" href="reaction_8cpp_source.html#l00225">225</a> of file <a class="el" href="reaction_8cpp_source.html">reaction.cpp</a>.</p>
-
 </div>
 </div>
 <a id="a5b872a8519740a6d06cfaed03784826a" name="a5b872a8519740a6d06cfaed03784826a"></a>
@@ -590,8 +589,6 @@ Private Attributes</h2></td></tr>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>True if the species is involved in any reaction. </dd></dl>
 
-<p class="definition">Definition at line <a class="el" href="reaction_8cpp_source.html#l00216">216</a> of file <a class="el" href="reaction_8cpp_source.html">reaction.cpp</a>.</p>
-
 </div>
 </div>
 <a id="abae9fbc4b4306479a6cd3173ac628987" name="abae9fbc4b4306479a6cd3173ac628987"></a>
@@ -617,8 +614,6 @@ Private Attributes</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p class="definition">Definition at line <a class="el" href="reaction_8h_source.html#l00437">437</a> of file <a class="el" href="reaction_8h_source.html">reaction.h</a>.</p>
-
 </div>
 </div>
 <a id="a436f9c4b8f8a4e115b19728d57d8e105" name="a436f9c4b8f8a4e115b19728d57d8e105"></a>
@@ -644,12 +639,35 @@ Private Attributes</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p class="definition">Definition at line <a class="el" href="reaction_8h_source.html#l00438">438</a> of file <a class="el" href="reaction_8h_source.html">reaction.h</a>.</p>
+</div>
+</div>
+<a id="a133ad8cca6a75d31ef8efe67801aef1b" name="a133ad8cca6a75d31ef8efe67801aef1b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a133ad8cca6a75d31ef8efe67801aef1b">&#9670;&#160;</a></span>getReactionSetSpecies()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_set&lt; Species &gt; gridfire::reaction::ReactionSet::getReactionSetSpecies </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
 
 </div>
 </div>
-<a id="a3209bb7c2a41deabaab059f6c671776f" name="a3209bb7c2a41deabaab059f6c671776f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3209bb7c2a41deabaab059f6c671776f">&#9670;&#160;</a></span>hash()</h2>
+<a id="ad28907fc08de978461d68cc5b77a3a99" name="ad28907fc08de978461d68cc5b77a3a99"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad28907fc08de978461d68cc5b77a3a99">&#9670;&#160;</a></span>hash()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -660,7 +678,7 @@ Private Attributes</h2></td></tr>
         <tr>
           <td class="memname">uint64_t gridfire::reaction::ReactionSet::hash </td>
           <td>(</td>
-          <td class="paramtype">uint64_t</td>          <td class="paramname"><span class="paramname"><em>seed</em></span><span class="paramdefsep"> = </span><span class="paramdefval">0</span></td><td>)</td>
+          <td class="paramtype">uint64_t</td>          <td class="paramname"><span class="paramname"><em>seed</em></span></td><td>)</td>
           <td> const</td>
         </tr>
       </table>
@@ -681,8 +699,6 @@ Private Attributes</h2></td></tr>
 <dl class="section return"><dt>Returns</dt><dd>A 64-bit hash value.</dd></dl>
 <p>The algorithm computes the hash of each individual reaction, sorts the hashes, and then computes a final hash over the sorted list of hashes. This ensures the hash is order-independent. </p>
 
-<p class="definition">Definition at line <a class="el" href="reaction_8cpp_source.html#l00270">270</a> of file <a class="el" href="reaction_8cpp_source.html">reaction.cpp</a>.</p>
-
 </div>
 </div>
 <a id="a529189f464aebc6b5ac5c717f70e14b8" name="a529189f464aebc6b5ac5c717f70e14b8"></a>
@@ -703,14 +719,12 @@ Private Attributes</h2></td></tr>
 <p>Compares this set with another for inequality. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html" title="A collection of Reaction objects.">ReactionSet</a> to compare with. </td></tr>
+    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> to compare with. </td></tr>
   </table>
   </dd>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>True if the sets are not equal. </dd></dl>
 
-<p class="definition">Definition at line <a class="el" href="reaction_8cpp_source.html#l00266">266</a> of file <a class="el" href="reaction_8cpp_source.html">reaction.cpp</a>.</p>
-
 </div>
 </div>
 <a id="aac890bf7fdf689890d765ff67489520a" name="aac890bf7fdf689890d765ff67489520a"></a>
@@ -731,13 +745,11 @@ Private Attributes</h2></td></tr>
 <p>Copy assignment operator. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">other</td><td>The <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html" title="A collection of Reaction objects.">ReactionSet</a> to assign from. </td></tr>
+    <tr><td class="paramname">other</td><td>The <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> to assign from. </td></tr>
   </table>
   </dd>
 </dl>
-<dl class="section return"><dt>Returns</dt><dd>A reference to this <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html" title="A collection of Reaction objects.">ReactionSet</a>. </dd></dl>
-
-<p class="definition">Definition at line <a class="el" href="reaction_8cpp_source.html#l00166">166</a> of file <a class="el" href="reaction_8cpp_source.html">reaction.cpp</a>.</p>
+<dl class="section return"><dt>Returns</dt><dd>A reference to this <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a>. </dd></dl>
 
 </div>
 </div>
@@ -759,14 +771,12 @@ Private Attributes</h2></td></tr>
 <p>Compares this set with another for equality. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html" title="A collection of Reaction objects.">ReactionSet</a> to compare with. </td></tr>
+    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> to compare with. </td></tr>
   </table>
   </dd>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>True if the sets are equal (same size and hash). </dd></dl>
 
-<p class="definition">Definition at line <a class="el" href="reaction_8cpp_source.html#l00259">259</a> of file <a class="el" href="reaction_8cpp_source.html">reaction.cpp</a>.</p>
-
 </div>
 </div>
 <a id="a896b4e492ef596d9174aeda4b59c46cd" name="a896b4e492ef596d9174aeda4b59c46cd"></a>
@@ -807,8 +817,6 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p class="definition">Definition at line <a class="el" href="reaction_8cpp_source.html#l00251">251</a> of file <a class="el" href="reaction_8cpp_source.html">reaction.cpp</a>.</p>
-
 </div>
 </div>
 <a id="a4057f74ae647b691f4f61f150553c52b" name="a4057f74ae647b691f4f61f150553c52b"></a>
@@ -829,7 +837,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -849,10 +857,6 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p>Reimplemented in <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction_set.html#a00001bbc0f888b167da50ae9fc2a75af">gridfire::reaction::LogicalReactionSet</a>.</p>
-
-<p class="definition">Definition at line <a class="el" href="reaction_8cpp_source.html#l00243">243</a> of file <a class="el" href="reaction_8cpp_source.html">reaction.cpp</a>.</p>
-
 </div>
 </div>
 <a id="a1177193b1e46b4e5be630028883ab8dd" name="a1177193b1e46b4e5be630028883ab8dd"></a>
@@ -860,9 +864,6 @@ Private Attributes</h2></td></tr>
 
 <div class="memitem">
 <div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
       <table class="memname">
         <tr>
           <td class="memname">void gridfire::reaction::ReactionSet::remove_reaction </td>
@@ -871,11 +872,6 @@ Private Attributes</h2></td></tr>
           <td></td>
         </tr>
       </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel virtual">virtual</span></span>  </td>
-  </tr>
-</table>
 </div><div class="memdoc">
 
 <p>Removes a reaction from the set. </p>
@@ -886,12 +882,10 @@ Private Attributes</h2></td></tr>
   </dd>
 </dl>
 
-<p class="definition">Definition at line <a class="el" href="reaction_8cpp_source.html#l00181">181</a> of file <a class="el" href="reaction_8cpp_source.html">reaction.cpp</a>.</p>
-
 </div>
 </div>
-<a id="a6b07a81a3500e4e91d3bcd336b66e35d" name="a6b07a81a3500e4e91d3bcd336b66e35d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6b07a81a3500e4e91d3bcd336b66e35d">&#9670;&#160;</a></span>size()</h2>
+<a id="af14cf34d7367cb6a6be5191724c2d4cf" name="af14cf34d7367cb6a6be5191724c2d4cf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af14cf34d7367cb6a6be5191724c2d4cf">&#9670;&#160;</a></span>size()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -900,7 +894,7 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">virtual size_t gridfire::reaction::ReactionSet::size </td>
+          <td class="memname">size_t gridfire::reaction::ReactionSet::size </td>
           <td>(</td>
           <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
           <td> const</td>
@@ -908,7 +902,7 @@ Private Attributes</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel virtual">virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -916,9 +910,35 @@ Private Attributes</h2></td></tr>
 <p>Gets the number of reactions in the set. </p>
 <dl class="section return"><dt>Returns</dt><dd>The size of the set. </dd></dl>
 
-<p>Reimplemented in <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction_set.html#a3bcdf2f98c19e9b95e03ad62d6ff7da7">gridfire::reaction::LogicalReactionSet</a>.</p>
+</div>
+</div>
+<h2 class="groupheader">Friends And Related Symbol Documentation</h2>
+<a id="a5a5e6ed364794f872c2c819536e24c20" name="a5a5e6ed364794f872c2c819536e24c20"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5a5e6ed364794f872c2c819536e24c20">&#9670;&#160;</a></span>operator&lt;&lt;</h2>
 
-<p class="definition">Definition at line <a class="el" href="reaction_8h_source.html#l00363">363</a> of file <a class="el" href="reaction_8h_source.html">reaction.h</a>.</p>
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::ostream &amp; operator&lt;&lt; </td>
+          <td>(</td>
+          <td class="paramtype">std::ostream &amp;</td>          <td class="paramname"><span class="paramname"><em>os</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>rs</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel friend">friend</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
 
 </div>
 </div>
@@ -943,8 +963,6 @@ Private Attributes</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p class="definition">Definition at line <a class="el" href="reaction_8h_source.html#l00443">443</a> of file <a class="el" href="reaction_8h_source.html">reaction.h</a>.</p>
-
 </div>
 </div>
 <a id="aff5ae284012009164d4b3033577709eb" name="aff5ae284012009164d4b3033577709eb"></a>
@@ -967,12 +985,10 @@ Private Attributes</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p class="definition">Definition at line <a class="el" href="reaction_8h_source.html#l00441">441</a> of file <a class="el" href="reaction_8h_source.html">reaction.h</a>.</p>
-
 </div>
 </div>
-<a id="ad3e2715e9e4d6b4f1dc54b969a1322f4" name="ad3e2715e9e4d6b4f1dc54b969a1322f4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad3e2715e9e4d6b4f1dc54b969a1322f4">&#9670;&#160;</a></span>m_reactionNameMap</h2>
+<a id="a62965c04447909462bb4f2112661ef44" name="a62965c04447909462bb4f2112661ef44"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a62965c04447909462bb4f2112661ef44">&#9670;&#160;</a></span>m_reactionNameMap</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -981,7 +997,7 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::unordered_map&lt;std::string, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a>&gt; gridfire::reaction::ReactionSet::m_reactionNameMap</td>
+          <td class="memname">std::unordered_map&lt;std::string, size_t&gt; gridfire::reaction::ReactionSet::m_reactionNameMap</td>
         </tr>
       </table>
   </td>
@@ -993,12 +1009,10 @@ Private Attributes</h2></td></tr>
 
 <p>Maps reaction IDs to <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> objects for quick lookup. </p>
 
-<p class="definition">Definition at line <a class="el" href="reaction_8h_source.html#l00444">444</a> of file <a class="el" href="reaction_8h_source.html">reaction.h</a>.</p>
-
 </div>
 </div>
-<a id="aaa3c40cb22b8bd056cf62b047ae4937c" name="aaa3c40cb22b8bd056cf62b047ae4937c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aaa3c40cb22b8bd056cf62b047ae4937c">&#9670;&#160;</a></span>m_reactions</h2>
+<a id="abd6feda1b3f65a6177904755581f6efe" name="abd6feda1b3f65a6177904755581f6efe"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abd6feda1b3f65a6177904755581f6efe">&#9670;&#160;</a></span>m_reactions</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -1007,7 +1021,7 @@ Private Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::vector&lt;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a>&gt; gridfire::reaction::ReactionSet::m_reactions</td>
+          <td class="memname">std::vector&lt;std::unique_ptr&lt;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a>&gt; &gt; gridfire::reaction::ReactionSet::m_reactions</td>
         </tr>
       </table>
   </td>
@@ -1017,13 +1031,11 @@ Private Attributes</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p class="definition">Definition at line <a class="el" href="reaction_8h_source.html#l00442">442</a> of file <a class="el" href="reaction_8h_source.html">reaction.h</a>.</p>
-
 </div>
 </div>
 <hr/>The documentation for this class was generated from the following files:<ul>
-<li>src/network/include/gridfire/reaction/<a class="el" href="reaction_8h_source.html">reaction.h</a></li>
-<li>src/network/lib/reaction/<a class="el" href="reaction_8cpp_source.html">reaction.cpp</a></li>
+<li>src/include/gridfire/reaction/<a class="el" href="reaction_8h.html">reaction.h</a></li>
+<li>src/lib/reaction/<a class="el" href="reaction_8cpp.html">reaction.cpp</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaction_set.js b/docs/html/classgridfire_1_1reaction_1_1_reaction_set.js
index ddedf997..badada54 100644
--- a/docs/html/classgridfire_1_1reaction_1_1_reaction_set.js
+++ b/docs/html/classgridfire_1_1reaction_1_1_reaction_set.js
@@ -1,9 +1,11 @@
 var classgridfire_1_1reaction_1_1_reaction_set =
 [
-    [ "ReactionSet", "classgridfire_1_1reaction_1_1_reaction_set.html#afc40e3783576867229fad3115b3d39d3", null ],
+    [ "ReactionSet", "classgridfire_1_1reaction_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de", null ],
+    [ "ReactionSet", "classgridfire_1_1reaction_1_1_reaction_set.html#a789dee5d93810b85062e59508fe0adea", null ],
+    [ "ReactionSet", "classgridfire_1_1reaction_1_1_reaction_set.html#ab9edff40316b42ce41b2f895962c1041", null ],
     [ "ReactionSet", "classgridfire_1_1reaction_1_1_reaction_set.html#acfe2341ae1f016ad82098b6f5a1efc45", null ],
-    [ "~ReactionSet", "classgridfire_1_1reaction_1_1_reaction_set.html#a64ca23fc5bdc41b868c3fbeb5aef6d98", null ],
-    [ "add_reaction", "classgridfire_1_1reaction_1_1_reaction_set.html#acea41c2ffb010e46bc5cf56f5f244fac", null ],
+    [ "add_reaction", "classgridfire_1_1reaction_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1", null ],
+    [ "add_reaction", "classgridfire_1_1reaction_1_1_reaction_set.html#ad7e95562ea0860bf492b447341f41fb5", null ],
     [ "begin", "classgridfire_1_1reaction_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613", null ],
     [ "begin", "classgridfire_1_1reaction_1_1_reaction_set.html#adb73fe9ff0178359409e2bea46a620c2", null ],
     [ "clear", "classgridfire_1_1reaction_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300", null ],
@@ -14,16 +16,18 @@ var classgridfire_1_1reaction_1_1_reaction_set =
     [ "contains_species", "classgridfire_1_1reaction_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a", null ],
     [ "end", "classgridfire_1_1reaction_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987", null ],
     [ "end", "classgridfire_1_1reaction_1_1_reaction_set.html#a436f9c4b8f8a4e115b19728d57d8e105", null ],
-    [ "hash", "classgridfire_1_1reaction_1_1_reaction_set.html#a3209bb7c2a41deabaab059f6c671776f", null ],
+    [ "getReactionSetSpecies", "classgridfire_1_1reaction_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b", null ],
+    [ "hash", "classgridfire_1_1reaction_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99", null ],
     [ "operator!=", "classgridfire_1_1reaction_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8", null ],
     [ "operator=", "classgridfire_1_1reaction_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a", null ],
     [ "operator==", "classgridfire_1_1reaction_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135", null ],
     [ "operator[]", "classgridfire_1_1reaction_1_1_reaction_set.html#a896b4e492ef596d9174aeda4b59c46cd", null ],
     [ "operator[]", "classgridfire_1_1reaction_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b", null ],
     [ "remove_reaction", "classgridfire_1_1reaction_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd", null ],
-    [ "size", "classgridfire_1_1reaction_1_1_reaction_set.html#a6b07a81a3500e4e91d3bcd336b66e35d", null ],
+    [ "size", "classgridfire_1_1reaction_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf", null ],
+    [ "operator<<", "classgridfire_1_1reaction_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20", null ],
     [ "m_id", "classgridfire_1_1reaction_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111", null ],
     [ "m_logger", "classgridfire_1_1reaction_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb", null ],
-    [ "m_reactionNameMap", "classgridfire_1_1reaction_1_1_reaction_set.html#ad3e2715e9e4d6b4f1dc54b969a1322f4", null ],
-    [ "m_reactions", "classgridfire_1_1reaction_1_1_reaction_set.html#aaa3c40cb22b8bd056cf62b047ae4937c", null ]
+    [ "m_reactionNameMap", "classgridfire_1_1reaction_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44", null ],
+    [ "m_reactions", "classgridfire_1_1reaction_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1screening_1_1_bare_screening_model-members.html b/docs/html/classgridfire_1_1screening_1_1_bare_screening_model-members.html
index 29e62276..4a275c9e 100644
--- a/docs/html/classgridfire_1_1screening_1_1_bare_screening_model-members.html
+++ b/docs/html/classgridfire_1_1screening_1_1_bare_screening_model-members.html
@@ -106,9 +106,9 @@ $(function(){initNavTree('classgridfire_1_1screening_1_1_bare_screening_model.ht
 <p>This is the complete list of members for <a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">gridfire::screening::BareScreeningModel</a>, including all inherited members.</p>
 <table class="directory">
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">gridfire::screening::BareScreeningModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a">calculateFactors_impl</a>(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; T &gt; &amp;Y, const T T9, const T rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">gridfire::screening::BareScreeningModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60">calculateScreeningFactors</a>(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">gridfire::screening::BareScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99">calculateScreeningFactors</a>(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; ADDouble &gt; &amp;Y, const ADDouble T9, const ADDouble rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">gridfire::screening::BareScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a48a3392d735c61b15b4855c823acfada">calculateFactors_impl</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; T &gt; &amp;Y, const T &amp;T9, const T &amp;rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">gridfire::screening::BareScreeningModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ad252ce1de82401bab24747aabf0c8a3a">calculateScreeningFactors</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">gridfire::screening::BareScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a0ac3685a90c1e65a84e03cfb2fed29e5">calculateScreeningFactors</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, ADDouble T9, ADDouble rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">gridfire::screening::BareScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/classgridfire_1_1screening_1_1_bare_screening_model.html b/docs/html/classgridfire_1_1screening_1_1_bare_screening_model.html
index eee2b8cb..988cecea 100644
--- a/docs/html/classgridfire_1_1screening_1_1_bare_screening_model.html
+++ b/docs/html/classgridfire_1_1screening_1_1_bare_screening_model.html
@@ -124,12 +124,12 @@ Inheritance diagram for gridfire::screening::BareScreeningModel:</div>
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
 Public Member Functions</h2></td></tr>
-<tr class="memitem:ac35ad34c5da7e1b5087552aa5c83fe60" id="r_ac35ad34c5da7e1b5087552aa5c83fe60"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac35ad34c5da7e1b5087552aa5c83fe60">calculateScreeningFactors</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:ac35ad34c5da7e1b5087552aa5c83fe60"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors, which are always 1.0.  <br /></td></tr>
-<tr class="separator:ac35ad34c5da7e1b5087552aa5c83fe60"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac5647d633cd5bbd7cb5136b7fa4cad99" id="r_ac5647d633cd5bbd7cb5136b7fa4cad99"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac5647d633cd5bbd7cb5136b7fa4cad99">calculateScreeningFactors</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> &gt; &amp;Y, const <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> T9, const <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> rho) const override</td></tr>
-<tr class="memdesc:ac5647d633cd5bbd7cb5136b7fa4cad99"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors for AD types, which are always 1.0.  <br /></td></tr>
-<tr class="separator:ac5647d633cd5bbd7cb5136b7fa4cad99"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad252ce1de82401bab24747aabf0c8a3a" id="r_ad252ce1de82401bab24747aabf0c8a3a"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad252ce1de82401bab24747aabf0c8a3a">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
+<tr class="memdesc:ad252ce1de82401bab24747aabf0c8a3a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors, which are always 1.0.  <br /></td></tr>
+<tr class="separator:ad252ce1de82401bab24747aabf0c8a3a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0ac3685a90c1e65a84e03cfb2fed29e5" id="r_a0ac3685a90c1e65a84e03cfb2fed29e5"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0ac3685a90c1e65a84e03cfb2fed29e5">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> T9, <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> rho) const override</td></tr>
+<tr class="memdesc:a0ac3685a90c1e65a84e03cfb2fed29e5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors for AD types, which are always 1.0.  <br /></td></tr>
+<tr class="separator:a0ac3685a90c1e65a84e03cfb2fed29e5"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="inherit_header pub_methods_classgridfire_1_1screening_1_1_screening_model"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1screening_1_1_screening_model')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td></tr>
 <tr class="memitem:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1_screening_model" id="r_adef175acdbd911527f56a1f1592579a7"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a> ()=default</td></tr>
 <tr class="memdesc:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1_screening_model"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
@@ -143,10 +143,10 @@ Private Types</h2></td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
 Private Member Functions</h2></td></tr>
-<tr class="memitem:a6c93b72c8ca34623127f0846d8dee50a" id="r_a6c93b72c8ca34623127f0846d8dee50a"><td class="memTemplParams" colspan="2">template&lt;typename T&gt; </td></tr>
-<tr class="memitem:a6c93b72c8ca34623127f0846d8dee50a"><td class="memTemplItemLeft" align="right" valign="top">std::vector&lt; T &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#a6c93b72c8ca34623127f0846d8dee50a">calculateFactors_impl</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; T &gt; &amp;Y, const T T9, const T rho) const</td></tr>
-<tr class="memdesc:a6c93b72c8ca34623127f0846d8dee50a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Template implementation for calculating screening factors.  <br /></td></tr>
-<tr class="separator:a6c93b72c8ca34623127f0846d8dee50a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a48a3392d735c61b15b4855c823acfada" id="r_a48a3392d735c61b15b4855c823acfada"><td class="memTemplParams" colspan="2">template&lt;typename T&gt; </td></tr>
+<tr class="memitem:a48a3392d735c61b15b4855c823acfada"><td class="memTemplItemLeft" align="right" valign="top">std::vector&lt; T &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#a48a3392d735c61b15b4855c823acfada">calculateFactors_impl</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; T &gt; &amp;Y, const T &amp;T9, const T &amp;rho) const</td></tr>
+<tr class="memdesc:a48a3392d735c61b15b4855c823acfada"><td class="mdescLeft">&#160;</td><td class="mdescRight">Template implementation for calculating screening factors.  <br /></td></tr>
+<tr class="separator:a48a3392d735c61b15b4855c823acfada"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
 Additional Inherited Members</h2></td></tr>
@@ -184,8 +184,8 @@ Additional Inherited Members</h2></td></tr>
 </div>
 </div>
 <h2 class="groupheader">Member Function Documentation</h2>
-<a id="a6c93b72c8ca34623127f0846d8dee50a" name="a6c93b72c8ca34623127f0846d8dee50a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6c93b72c8ca34623127f0846d8dee50a">&#9670;&#160;</a></span>calculateFactors_impl()</h2>
+<a id="a48a3392d735c61b15b4855c823acfada" name="a48a3392d735c61b15b4855c823acfada"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a48a3392d735c61b15b4855c823acfada">&#9670;&#160;</a></span>calculateFactors_impl()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -198,7 +198,7 @@ template&lt;typename T&gt; </div>
         <tr>
           <td class="memname">std::vector&lt; T &gt; gridfire::screening::BareScreeningModel::calculateFactors_impl </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -213,12 +213,12 @@ template&lt;typename T&gt; </div>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const T</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">const T &amp;</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const T</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">const T &amp;</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -241,7 +241,7 @@ template&lt;typename T&gt; </div>
   <table class="params">
     <tr><td class="paramname">reactions</td><td>The set of reactions for which to calculate factors. </td></tr>
     <tr><td class="paramname">species</td><td>A vector of all atomic species (unused). </td></tr>
-    <tr><td class="paramname">Y</td><td>A vector of molar abundances (unused). </td></tr>
+    <tr><td class="paramname">Y</td><td>The current molar composition (unused). </td></tr>
     <tr><td class="paramname">T9</td><td>The temperature (unused). </td></tr>
     <tr><td class="paramname">rho</td><td>The density (unused). </td></tr>
   </table>
@@ -259,18 +259,15 @@ template&lt;typename T&gt; </div>
   <table class="params">
     <tr><td class="paramname">reactions</td><td>The set of reactions, used to determine the size of the output vector. </td></tr>
     <tr><td class="paramname">species</td><td>Unused parameter. </td></tr>
-    <tr><td class="paramname">Y</td><td>Unused parameter. </td></tr>
-    <tr><td class="paramname">T9</td><td>Unused parameter. </td></tr>
-    <tr><td class="paramname">rho</td><td>Unused parameter. </td></tr>
+    <tr><td class="paramname">Y</td><td>Unused parameter.<code> @param T9 Unused parameter. @param rho Unused parameter. @return A</code>std::vector&lt;T&gt;<code>of the same size as</code>reactions`, with all elements set to 1.0. </td></tr>
   </table>
   </dd>
 </dl>
-<dl class="section return"><dt>Returns</dt><dd>A <code>std::vector&lt;T&gt;</code> of the same size as <code>reactions</code>, with all elements set to 1.0. </dd></dl>
 
 </div>
 </div>
-<a id="ac5647d633cd5bbd7cb5136b7fa4cad99" name="ac5647d633cd5bbd7cb5136b7fa4cad99"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac5647d633cd5bbd7cb5136b7fa4cad99">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[1/2]</span></h2>
+<a id="a0ac3685a90c1e65a84e03cfb2fed29e5" name="a0ac3685a90c1e65a84e03cfb2fed29e5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0ac3685a90c1e65a84e03cfb2fed29e5">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[1/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -281,7 +278,7 @@ template&lt;typename T&gt; </div>
         <tr>
           <td class="memname">std::vector&lt; <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> &gt; gridfire::screening::BareScreeningModel::calculateScreeningFactors </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -291,17 +288,17 @@ template&lt;typename T&gt; </div>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a></td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype"><a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a></td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a></td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype"><a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a></td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -317,7 +314,7 @@ template&lt;typename T&gt; </div>
   <table class="params">
     <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
     <tr><td class="paramname">species</td><td>A vector of all atomic species (unused). </td></tr>
-    <tr><td class="paramname">Y</td><td>A vector of the molar abundances as AD types (unused). </td></tr>
+    <tr><td class="paramname">Y</td><td>The current composition, providing molar abundances (mol/g) for each species (unused). </td></tr>
     <tr><td class="paramname">T9</td><td>The temperature as an AD type (unused). </td></tr>
     <tr><td class="paramname">rho</td><td>The plasma density as an AD type (unused). </td></tr>
   </table>
@@ -325,12 +322,12 @@ template&lt;typename T&gt; </div>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>A vector of <a class="el" href="#a51119d705267e0b415aae8b4881d8c96" title="Alias for CppAD Automatic Differentiation type for double precision.">ADDouble</a>, with each element being 1.0, of the same size as the <code>reactions</code> set. </dd></dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22">gridfire::screening::ScreeningModel</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a1da8242c7591ab32453d1e0109999d6c">gridfire::screening::ScreeningModel</a>.</p>
 
 </div>
 </div>
-<a id="ac35ad34c5da7e1b5087552aa5c83fe60" name="ac35ad34c5da7e1b5087552aa5c83fe60"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac35ad34c5da7e1b5087552aa5c83fe60">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[2/2]</span></h2>
+<a id="ad252ce1de82401bab24747aabf0c8a3a" name="ad252ce1de82401bab24747aabf0c8a3a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad252ce1de82401bab24747aabf0c8a3a">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[2/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -341,7 +338,7 @@ template&lt;typename T&gt; </div>
         <tr>
           <td class="memname">std::vector&lt; double &gt; gridfire::screening::BareScreeningModel::calculateScreeningFactors </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -356,12 +353,12 @@ template&lt;typename T&gt; </div>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -377,7 +374,7 @@ template&lt;typename T&gt; </div>
   <table class="params">
     <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
     <tr><td class="paramname">species</td><td>A vector of all atomic species (unused). </td></tr>
-    <tr><td class="paramname">Y</td><td>A vector of the molar abundances (unused). </td></tr>
+    <tr><td class="paramname">Y</td><td>A vector of the molar abundances. </td></tr>
     <tr><td class="paramname">T9</td><td>The temperature (unused). </td></tr>
     <tr><td class="paramname">rho</td><td>The plasma density (unused). </td></tr>
   </table>
@@ -387,14 +384,14 @@ template&lt;typename T&gt; </div>
 <p><b>Algorithm</b> The function simply creates and returns a <code>std::vector&lt;double&gt;</code> of the same size as the input <code>reactions</code> set, with all elements initialized to 1.0.</p>
 <p><b>Usage</b> </p><div class="fragment"><div class="line"><a class="code hl_class" href="classgridfire_1_1screening_1_1_bare_screening_model.html">BareScreeningModel</a> bare_model;</div>
 <div class="line"><span class="comment">// ... (initialize reactions, species, Y, T9, rho)</span></div>
-<div class="line">std::vector&lt;double&gt; factors = bare_model.<a class="code hl_function" href="#ac35ad34c5da7e1b5087552aa5c83fe60">calculateScreeningFactors</a>(</div>
+<div class="line">std::vector&lt;double&gt; factors = bare_model.<a class="code hl_function" href="#ad252ce1de82401bab24747aabf0c8a3a">calculateScreeningFactors</a>(</div>
 <div class="line">    reactions, species, Y, T9, rho</div>
 <div class="line">);</div>
 <div class="line"><span class="comment">// &#39;factors&#39; will contain [1.0, 1.0, ...]</span></div>
 <div class="ttc" id="aclassgridfire_1_1screening_1_1_bare_screening_model_html"><div class="ttname"><a href="classgridfire_1_1screening_1_1_bare_screening_model.html">gridfire::screening::BareScreeningModel</a></div><div class="ttdoc">A screening model that applies no screening effect.</div><div class="ttdef"><b>Definition</b> screening_bare.h:21</div></div>
-<div class="ttc" id="aclassgridfire_1_1screening_1_1_bare_screening_model_html_ac35ad34c5da7e1b5087552aa5c83fe60"><div class="ttname"><a href="#ac35ad34c5da7e1b5087552aa5c83fe60">gridfire::screening::BareScreeningModel::calculateScreeningFactors</a></div><div class="ttdeci">std::vector&lt; double &gt; calculateScreeningFactors(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override</div><div class="ttdoc">Calculates screening factors, which are always 1.0.</div><div class="ttdef"><b>Definition</b> screening_bare.cpp:22</div></div>
+<div class="ttc" id="aclassgridfire_1_1screening_1_1_bare_screening_model_html_ad252ce1de82401bab24747aabf0c8a3a"><div class="ttname"><a href="#ad252ce1de82401bab24747aabf0c8a3a">gridfire::screening::BareScreeningModel::calculateScreeningFactors</a></div><div class="ttdeci">std::vector&lt; double &gt; calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</div><div class="ttdoc">Calculates screening factors, which are always 1.0.</div><div class="ttdef"><b>Definition</b> screening_bare.cpp:22</div></div>
 </div><!-- fragment --> 
-<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde">gridfire::screening::ScreeningModel</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#ab08c4490f9da18254a7c6f29be1f62ce">gridfire::screening::ScreeningModel</a>.</p>
 
 </div>
 </div>
diff --git a/docs/html/classgridfire_1_1screening_1_1_bare_screening_model.js b/docs/html/classgridfire_1_1screening_1_1_bare_screening_model.js
index bfbf4a65..90338c8e 100644
--- a/docs/html/classgridfire_1_1screening_1_1_bare_screening_model.js
+++ b/docs/html/classgridfire_1_1screening_1_1_bare_screening_model.js
@@ -1,7 +1,7 @@
 var classgridfire_1_1screening_1_1_bare_screening_model =
 [
     [ "ADDouble", "classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96", null ],
-    [ "calculateFactors_impl", "classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a", null ],
-    [ "calculateScreeningFactors", "classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99", null ],
-    [ "calculateScreeningFactors", "classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60", null ]
+    [ "calculateFactors_impl", "classgridfire_1_1screening_1_1_bare_screening_model.html#a48a3392d735c61b15b4855c823acfada", null ],
+    [ "calculateScreeningFactors", "classgridfire_1_1screening_1_1_bare_screening_model.html#a0ac3685a90c1e65a84e03cfb2fed29e5", null ],
+    [ "calculateScreeningFactors", "classgridfire_1_1screening_1_1_bare_screening_model.html#ad252ce1de82401bab24747aabf0c8a3a", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model-members.html b/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model-members.html
new file mode 100644
index 00000000..f775b3c0
--- /dev/null
+++ b/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model-members.html
@@ -0,0 +1,122 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1screening_1_1_intermediate_screening_model.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::screening::IntermediateScreeningModel Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html">gridfire::screening::IntermediateScreeningModel</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html#a794b7781f07343383da3894208cfbfa9">calculateFactors_impl</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; T &gt; &amp;Y, T T9, T rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html">gridfire::screening::IntermediateScreeningModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html#a86a218ce82306ed582296cbeb3de0250">calculateScreeningFactors</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html">gridfire::screening::IntermediateScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html#a765e369256282f0f25e66e13c33dcbd9">calculateScreeningFactors</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; ADDouble &gt; &amp;Y, ADDouble T9, ADDouble rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html">gridfire::screening::IntermediateScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model.html b/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model.html
new file mode 100644
index 00000000..86d5a77f
--- /dev/null
+++ b/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model.html
@@ -0,0 +1,344 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::screening::IntermediateScreeningModel Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1screening_1_1_intermediate_screening_model.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="classgridfire_1_1screening_1_1_intermediate_screening_model-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::screening::IntermediateScreeningModel Class Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;screening_intermediate.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::screening::IntermediateScreeningModel:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="classgridfire_1_1screening_1_1_intermediate_screening_model.png" usemap="#gridfire::screening::IntermediateScreeningModel_map" alt=""/>
+  <map id="gridfire::screening::IntermediateScreeningModel_map" name="gridfire::screening::IntermediateScreeningModel_map">
+<area href="classgridfire_1_1screening_1_1_screening_model.html" title="An abstract base class for plasma screening models." alt="gridfire::screening::ScreeningModel" shape="rect" coords="0,0,282,24"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a86a218ce82306ed582296cbeb3de0250" id="r_a86a218ce82306ed582296cbeb3de0250"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a86a218ce82306ed582296cbeb3de0250">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a86a218ce82306ed582296cbeb3de0250"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors for a set of reactions.  <br /></td></tr>
+<tr class="separator:a86a218ce82306ed582296cbeb3de0250"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a765e369256282f0f25e66e13c33dcbd9" id="r_a765e369256282f0f25e66e13c33dcbd9"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a765e369256282f0f25e66e13c33dcbd9">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; &amp;Y, <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> T9, <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> rho) const override</td></tr>
+<tr class="memdesc:a765e369256282f0f25e66e13c33dcbd9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors using CppAD types for automatic differentiation.  <br /></td></tr>
+<tr class="separator:a765e369256282f0f25e66e13c33dcbd9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1screening_1_1_screening_model"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1screening_1_1_screening_model')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td></tr>
+<tr class="memitem:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1_screening_model" id="r_adef175acdbd911527f56a1f1592579a7"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a> ()=default</td></tr>
+<tr class="memdesc:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1_screening_model"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1_screening_model"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:a794b7781f07343383da3894208cfbfa9" id="r_a794b7781f07343383da3894208cfbfa9"><td class="memTemplParams" colspan="2">template&lt;typename T&gt; </td></tr>
+<tr class="memitem:a794b7781f07343383da3894208cfbfa9"><td class="memTemplItemLeft" align="right" valign="top">std::vector&lt; T &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#a794b7781f07343383da3894208cfbfa9">calculateFactors_impl</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; T &gt; &amp;Y, T T9, T rho) const</td></tr>
+<tr class="separator:a794b7781f07343383da3894208cfbfa9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_types_classgridfire_1_1screening_1_1_screening_model"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_types_classgridfire_1_1screening_1_1_screening_model')"><img src="closed.png" alt="-"/>&#160;Public Types inherited from <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td></tr>
+<tr class="memitem:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1_screening_model" id="r_a107ff2897f040d6f27f69d56a0bdd28d"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> = CppAD::AD&lt;double&gt;</td></tr>
+<tr class="memdesc:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1_screening_model"><td class="mdescLeft">&#160;</td><td class="mdescRight">Alias for CppAD Automatic Differentiation type for double precision.  <br /></td></tr>
+<tr class="separator:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1_screening_model"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a794b7781f07343383da3894208cfbfa9" name="a794b7781f07343383da3894208cfbfa9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a794b7781f07343383da3894208cfbfa9">&#9670;&#160;</a></span>calculateFactors_impl()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; T &gt; gridfire::screening::IntermediateScreeningModel::calculateFactors_impl </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; T &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a765e369256282f0f25e66e13c33dcbd9" name="a765e369256282f0f25e66e13c33dcbd9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a765e369256282f0f25e66e13c33dcbd9">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; gridfire::screening::IntermediateScreeningModel::calculateScreeningFactors </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a></td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a></td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates screening factors using CppAD types for automatic differentiation. </p>
+<p>This is a pure virtual function that provides an overload of <code>calculateScreeningFactors</code> for use with CppAD. It allows the derivatives of the screening factors with respect to abundances, temperature, and density to be computed automatically.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
+    <tr><td class="paramname">species</td><td>A vector of all atomic species involved in the network. </td></tr>
+    <tr><td class="paramname">Y</td><td>The current composition, providing molar abundances (mol/g) for each species. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K, as an AD type. </td></tr>
+    <tr><td class="paramname">rho</td><td>The plasma density in g/cm^3, as an AD type. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of screening factors (dimensionless), as AD types.</dd></dl>
+<p><b>Note</b> This method is essential for including the effects of screening in the Jacobian matrix of the reaction network. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a1da8242c7591ab32453d1e0109999d6c">gridfire::screening::ScreeningModel</a>.</p>
+
+</div>
+</div>
+<a id="a86a218ce82306ed582296cbeb3de0250" name="a86a218ce82306ed582296cbeb3de0250"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a86a218ce82306ed582296cbeb3de0250">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; double &gt; gridfire::screening::IntermediateScreeningModel::calculateScreeningFactors </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates screening factors for a set of reactions. </p>
+<p>This is a pure virtual function that must be implemented by derived classes. It computes the screening enhancement factor for each reaction in the provided set based on the given plasma conditions.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
+    <tr><td class="paramname">species</td><td>A vector of all atomic species involved in the network. </td></tr>
+    <tr><td class="paramname">Y</td><td>The current composition, providing molar abundances (mol/g) for each species. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The plasma density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of screening factors (dimensionless), one for each reaction in the <code>reactions</code> set, in the same order.</dd></dl>
+<p><b>Pre-conditions</b> </p><ul>
+<li>The size of the <code>Y</code> vector must match the size of the <code>species</code> vector.</li>
+<li><code>T9</code> and <code>rho</code> must be positive.</li>
+</ul>
+<p><b>Post-conditions</b> </p><ul>
+<li>The returned vector will have the same size as the <code>reactions</code> set.</li>
+<li>Each element in the returned vector will be &gt;= 1.0.</li>
+</ul>
+<p><b>Usage</b> </p><div class="fragment"><div class="line"><span class="comment">// Assume &#39;model&#39; is a std::unique_ptr&lt;ScreeningModel&gt; to a concrete implementation</span></div>
+<div class="line"><span class="comment">// and other parameters (reactions, species, Y, T9, rho) are initialized.</span></div>
+<div class="line">std::vector&lt;double&gt; screening_factors = model-&gt;calculateScreeningFactors(</div>
+<div class="line">    reactions, species, Y, T9, rho</div>
+<div class="line">);</div>
+<div class="line"><span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i &lt; reactions.size(); ++i) {</div>
+<div class="line">    <span class="comment">// ... use screening_factors[i] ...</span></div>
+<div class="line">}</div>
+</div><!-- fragment --> 
+<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#ab08c4490f9da18254a7c6f29be1f62ce">gridfire::screening::ScreeningModel</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/screening/<a class="el" href="screening__intermediate_8h.html">screening_intermediate.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1screening.html">screening</a></li><li class="navelem"><a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html">IntermediateScreeningModel</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model.js b/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model.js
new file mode 100644
index 00000000..69ec5a7b
--- /dev/null
+++ b/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model.js
@@ -0,0 +1,6 @@
+var classgridfire_1_1screening_1_1_intermediate_screening_model =
+[
+    [ "calculateFactors_impl", "classgridfire_1_1screening_1_1_intermediate_screening_model.html#a794b7781f07343383da3894208cfbfa9", null ],
+    [ "calculateScreeningFactors", "classgridfire_1_1screening_1_1_intermediate_screening_model.html#a765e369256282f0f25e66e13c33dcbd9", null ],
+    [ "calculateScreeningFactors", "classgridfire_1_1screening_1_1_intermediate_screening_model.html#a86a218ce82306ed582296cbeb3de0250", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model.png b/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model.png
new file mode 100644
index 0000000000000000000000000000000000000000..9366a9c06553ef2f7d23940e4f44fc3ce556ff0b
GIT binary patch
literal 1039
zcmeAS@N?(olHy`uVBq!ia0y~yV3Y!~12~w0<j0#{W<W|hz$e7@|Ns9$=8HF9OZyKk
zw=mEwkeGhv#e)YAfa0cS!<GQ$I7@>3f*F8(FfeDDeT9L6d6uV(V@L(#+qrN17F!9p
zoKDRQdH?^2`OJhrj*Nz!t0(5I|HhMWr>r<>`+ue9bDHNA%Q>o@Y*49o;`NL|#(Jwf
zzfKCOR63dYE$Q-OdCz$pUxrBi694-0ZHj%gX@92OMW;#DfB331-yD6R@GZ^s^skD4
zvC~h#&yS9Z_pj~q4*vbCwDOqP?xlO5#pb6yjyBCcFzJJk!=&dvD>N_b8BIHG6kR<3
z#JByGcUj)wSsP!WxbI((>3q96D*iKrFJFqcnstBg-JfO!)<N4}J$t-%)<dUB%WJ}Y
z!>zZ^|5g>Nm!7qYztVo+4a3tpy~-zp_wCE-v&*gC^>&qJYK2{0{Mp*ninXSB?6-NJ
z#>?k)?0ObuTKsX_^Rru*%?rp*l_^@E?x4HmHRokHiROoe2R2o&JGR~W&-^(7!K){#
z=zn<m<NlfVPHPoUTK_2dlmFa&`@(mzCiDCLKmDU-F5>wwp2JinlM@M7t~hD=T;cf~
zc7_M<KQJ>eGW4`aF%<my(<04a0Aksk0kUogWiceQ3otWG3!pLHzf^7Ml%^>`QjU|B
zI83T?>Q#wE#%pFReOc+b(#G?WiS@><KYI_#$L9QhuBhaho?|t&?cdR~zQv)JpQ?Dq
zCx@NQd$RP8*y83J%<$-a9|Vlvzdw+o_uM|S{c0<k_poKT$3<sdH*$`(Ew<c}wJY=2
z#Bfv9l!+T{rp-HBJL%T{XQje>%FS)AIM&%On!o0?=@<R&lP#~rSI=2?Q)}(4Y5y)=
z)Y(;b{nmlE9&f{B?MegeW6b`Z&bOS~9GaXqJK*xwy}42AuRk?fm?pVB+?a23$lYcC
z1NiQrUkFYFv*S&zLwDU>7<+p6>NMdZ10U;)OJ%-Y{b97{n$-5+Z`wYs=NBuEEjE_U
zT7PXz*0Z7ww)|PXwhOPVGCLFfx?H#E^~(!lzt5I`WBzt?n|jFib8`dEZVW5Cu~p`l
zR$-OXSNGj2wexo$pT5NS-ucAfY?YUM@8seqottrb;oX4mX?5R!Oe#4R!gsfA(h`L$
s9+wmsx=qr7VSZE1r6NnFTsly1U;OOf7YTP+VAf^uboFyt=akR{03JEx(EtDd

literal 0
HcmV?d00001

diff --git a/docs/html/classgridfire_1_1screening_1_1_screening_model-members.html b/docs/html/classgridfire_1_1screening_1_1_screening_model-members.html
index 87fccfbc..90331c59 100644
--- a/docs/html/classgridfire_1_1screening_1_1_screening_model-members.html
+++ b/docs/html/classgridfire_1_1screening_1_1_screening_model-members.html
@@ -106,8 +106,8 @@ $(function(){initNavTree('classgridfire_1_1screening_1_1_screening_model.html','
 <p>This is the complete list of members for <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a>, including all inherited members.</p>
 <table class="directory">
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde">calculateScreeningFactors</a>(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22">calculateScreeningFactors</a>(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; ADDouble &gt; &amp;Y, const ADDouble T9, const ADDouble rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#ab08c4490f9da18254a7c6f29be1f62ce">calculateScreeningFactors</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a1da8242c7591ab32453d1e0109999d6c">calculateScreeningFactors</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, ADDouble T9, ADDouble rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/classgridfire_1_1screening_1_1_screening_model.html b/docs/html/classgridfire_1_1screening_1_1_screening_model.html
index 453de161..f824d92c 100644
--- a/docs/html/classgridfire_1_1screening_1_1_screening_model.html
+++ b/docs/html/classgridfire_1_1screening_1_1_screening_model.html
@@ -117,9 +117,10 @@ Inheritance diagram for gridfire::screening::ScreeningModel:</div>
  <div class="center">
   <img src="classgridfire_1_1screening_1_1_screening_model.png" usemap="#gridfire::screening::ScreeningModel_map" alt=""/>
   <map id="gridfire::screening::ScreeningModel_map" name="gridfire::screening::ScreeningModel_map">
-<area href="class_py_screening.html" alt="PyScreening" shape="rect" coords="0,56,245,80"/>
-<area href="classgridfire_1_1screening_1_1_bare_screening_model.html" title="A screening model that applies no screening effect." alt="gridfire::screening::BareScreeningModel" shape="rect" coords="255,56,500,80"/>
-<area href="classgridfire_1_1screening_1_1_weak_screening_model.html" title="Implements the weak screening model based on the Debye-Hückel approximation." alt="gridfire::screening::WeakScreeningModel" shape="rect" coords="510,56,755,80"/>
+<area href="class_py_screening.html" alt="PyScreening" shape="rect" coords="0,56,282,80"/>
+<area href="classgridfire_1_1screening_1_1_bare_screening_model.html" title="A screening model that applies no screening effect." alt="gridfire::screening::BareScreeningModel" shape="rect" coords="292,56,574,80"/>
+<area href="classgridfire_1_1screening_1_1_intermediate_screening_model.html" alt="gridfire::screening::IntermediateScreeningModel" shape="rect" coords="584,56,866,80"/>
+<area href="classgridfire_1_1screening_1_1_weak_screening_model.html" title="Implements the weak screening model based on the Debye-Hückel approximation." alt="gridfire::screening::WeakScreeningModel" shape="rect" coords="876,56,1158,80"/>
   </map>
 </div></div>
 <table class="memberdecls">
@@ -134,12 +135,12 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:adef175acdbd911527f56a1f1592579a7" id="r_adef175acdbd911527f56a1f1592579a7"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a> ()=default</td></tr>
 <tr class="memdesc:adef175acdbd911527f56a1f1592579a7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
 <tr class="separator:adef175acdbd911527f56a1f1592579a7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaec9184d80c86a2d8674e395dad81bde" id="r_aaec9184d80c86a2d8674e395dad81bde"><td class="memItemLeft" align="right" valign="top">virtual std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aaec9184d80c86a2d8674e395dad81bde">calculateScreeningFactors</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const =0</td></tr>
-<tr class="memdesc:aaec9184d80c86a2d8674e395dad81bde"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors for a set of reactions.  <br /></td></tr>
-<tr class="separator:aaec9184d80c86a2d8674e395dad81bde"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6c381a823cb9c1680d3e9c846da4ae22" id="r_a6c381a823cb9c1680d3e9c846da4ae22"><td class="memItemLeft" align="right" valign="top">virtual std::vector&lt; <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6c381a823cb9c1680d3e9c846da4ae22">calculateScreeningFactors</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; &amp;Y, const <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> T9, const <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> rho) const =0</td></tr>
-<tr class="memdesc:a6c381a823cb9c1680d3e9c846da4ae22"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors using CppAD types for automatic differentiation.  <br /></td></tr>
-<tr class="separator:a6c381a823cb9c1680d3e9c846da4ae22"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab08c4490f9da18254a7c6f29be1f62ce" id="r_ab08c4490f9da18254a7c6f29be1f62ce"><td class="memItemLeft" align="right" valign="top">virtual std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab08c4490f9da18254a7c6f29be1f62ce">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:ab08c4490f9da18254a7c6f29be1f62ce"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors for a set of reactions.  <br /></td></tr>
+<tr class="separator:ab08c4490f9da18254a7c6f29be1f62ce"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1da8242c7591ab32453d1e0109999d6c" id="r_a1da8242c7591ab32453d1e0109999d6c"><td class="memItemLeft" align="right" valign="top">virtual std::vector&lt; <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1da8242c7591ab32453d1e0109999d6c">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> T9, <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> rho) const =0</td></tr>
+<tr class="memdesc:a1da8242c7591ab32453d1e0109999d6c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors using CppAD types for automatic differentiation.  <br /></td></tr>
+<tr class="separator:a1da8242c7591ab32453d1e0109999d6c"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
 <div class="textblock"><p>An abstract base class for plasma screening models. </p>
@@ -192,8 +193,8 @@ Public Member Functions</h2></td></tr>
 </div>
 </div>
 <h2 class="groupheader">Member Function Documentation</h2>
-<a id="a6c381a823cb9c1680d3e9c846da4ae22" name="a6c381a823cb9c1680d3e9c846da4ae22"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6c381a823cb9c1680d3e9c846da4ae22">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[1/2]</span></h2>
+<a id="a1da8242c7591ab32453d1e0109999d6c" name="a1da8242c7591ab32453d1e0109999d6c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1da8242c7591ab32453d1e0109999d6c">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[1/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -204,7 +205,7 @@ Public Member Functions</h2></td></tr>
         <tr>
           <td class="memname">virtual std::vector&lt; <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; gridfire::screening::ScreeningModel::calculateScreeningFactors </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -214,22 +215,22 @@ Public Member Functions</h2></td></tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a></td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype"><a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a></td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a></td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype"><a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a></td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -240,7 +241,7 @@ Public Member Functions</h2></td></tr>
   <table class="params">
     <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
     <tr><td class="paramname">species</td><td>A vector of all atomic species involved in the network. </td></tr>
-    <tr><td class="paramname">Y</td><td>A vector of the molar abundances (mol/g) for each species, as AD types. </td></tr>
+    <tr><td class="paramname">Y</td><td>The current composition, providing molar abundances (mol/g) for each species. </td></tr>
     <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K, as an AD type. </td></tr>
     <tr><td class="paramname">rho</td><td>The plasma density in g/cm^3, as an AD type. </td></tr>
   </table>
@@ -249,12 +250,12 @@ Public Member Functions</h2></td></tr>
 <dl class="section return"><dt>Returns</dt><dd>A vector of screening factors (dimensionless), as AD types.</dd></dl>
 <p><b>Note</b> This method is essential for including the effects of screening in the Jacobian matrix of the reaction network. </p>
 
-<p>Implemented in <a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#ac6bc78769670a460af1ff88284cb8ad4">gridfire::screening::WeakScreeningModel</a>, and <a class="el" href="class_py_screening.html#a5539d59311c778cf7f0006acc8f84ade">PyScreening</a>.</p>
+<p>Implemented in <a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a0ac3685a90c1e65a84e03cfb2fed29e5">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html#a765e369256282f0f25e66e13c33dcbd9">gridfire::screening::IntermediateScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a8b0590814e7058b4ff3f0cd6f4124773">gridfire::screening::WeakScreeningModel</a>, and <a class="el" href="class_py_screening.html#a68a126de903e1a87a1d7d1cfec8add0f">PyScreening</a>.</p>
 
 </div>
 </div>
-<a id="aaec9184d80c86a2d8674e395dad81bde" name="aaec9184d80c86a2d8674e395dad81bde"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aaec9184d80c86a2d8674e395dad81bde">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[2/2]</span></h2>
+<a id="ab08c4490f9da18254a7c6f29be1f62ce" name="ab08c4490f9da18254a7c6f29be1f62ce"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab08c4490f9da18254a7c6f29be1f62ce">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[2/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -265,7 +266,7 @@ Public Member Functions</h2></td></tr>
         <tr>
           <td class="memname">virtual std::vector&lt; double &gt; gridfire::screening::ScreeningModel::calculateScreeningFactors </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -280,17 +281,17 @@ Public Member Functions</h2></td></tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -301,7 +302,7 @@ Public Member Functions</h2></td></tr>
   <table class="params">
     <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
     <tr><td class="paramname">species</td><td>A vector of all atomic species involved in the network. </td></tr>
-    <tr><td class="paramname">Y</td><td>A vector of the molar abundances (mol/g) for each species. </td></tr>
+    <tr><td class="paramname">Y</td><td>The current composition, providing molar abundances (mol/g) for each species. </td></tr>
     <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>The plasma density in g/cm^3. </td></tr>
   </table>
@@ -325,7 +326,7 @@ Public Member Functions</h2></td></tr>
 <div class="line">    <span class="comment">// ... use screening_factors[i] ...</span></div>
 <div class="line">}</div>
 </div><!-- fragment --> 
-<p>Implemented in <a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c">gridfire::screening::WeakScreeningModel</a>, and <a class="el" href="class_py_screening.html#a2b8756c197eb89e77cb6dd231c979315">PyScreening</a>.</p>
+<p>Implemented in <a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ad252ce1de82401bab24747aabf0c8a3a">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html#a86a218ce82306ed582296cbeb3de0250">gridfire::screening::IntermediateScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a6a215d082b0d05126fb2b19fd1983446">gridfire::screening::WeakScreeningModel</a>, and <a class="el" href="class_py_screening.html#aa67b5f0528006d9c742033b8c5ab3a05">PyScreening</a>.</p>
 
 </div>
 </div>
diff --git a/docs/html/classgridfire_1_1screening_1_1_screening_model.js b/docs/html/classgridfire_1_1screening_1_1_screening_model.js
index 302ffe74..76612079 100644
--- a/docs/html/classgridfire_1_1screening_1_1_screening_model.js
+++ b/docs/html/classgridfire_1_1screening_1_1_screening_model.js
@@ -2,6 +2,6 @@ var classgridfire_1_1screening_1_1_screening_model =
 [
     [ "ADDouble", "classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d", null ],
     [ "~ScreeningModel", "classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7", null ],
-    [ "calculateScreeningFactors", "classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22", null ],
-    [ "calculateScreeningFactors", "classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde", null ]
+    [ "calculateScreeningFactors", "classgridfire_1_1screening_1_1_screening_model.html#a1da8242c7591ab32453d1e0109999d6c", null ],
+    [ "calculateScreeningFactors", "classgridfire_1_1screening_1_1_screening_model.html#ab08c4490f9da18254a7c6f29be1f62ce", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1screening_1_1_screening_model.png b/docs/html/classgridfire_1_1screening_1_1_screening_model.png
index c41bc7a6bb0e53fa2a14d40719072dd33199854e..1c65a4a832a73e5aca130663c0dbfac52ed19771 100644
GIT binary patch
literal 2140
zcmcJOe>~Is9>>3qPOBJpJ7q@PW{DhekIm1b7;7qXBtNQkZRcoyMLNciU%7XF#IXD*
z%%b@%a*&WX>2Q?B+Gga(l;qb@xl>v*I~#i3```WJ-23_C`+2@!pZDYaem`EH&o|Z0
z6$9P@+W`Oo7<&xu4gg!Ia(3IMEdQR>qV1G#+HNO2oMbYY9A|(3K+b$rVP$4?37X$O
zJ2^Qi*HO<rS@N^(;qI=d0C~K=EWaw`0RU(Qi$3Z>QCegy=2hEhpe=Koy`^ioE4}Jw
zzQK@v?4q-}D@qRZ?S3SYW*4w(L?uA`%~ZQ#fU+;3+I3VF0x^ISQ&C$KQMR`u1Ol$z
zt2m=QhNY$W`+}9Afbu28kQ*AU9JH+qfF|fSP~mWxw<EB%3()C12*!gLYTagdC-j5<
z+YQ|V`{A#&A{ph>>5NhSn_tgtrWLA1ktpcL%53gi^Vfbn7vhjcf|41~nZ6h!C6Smm
z%r$$xf&CSWcFpJO^6c(g@LNoixx;-wo{~I+v|RV<6~GEW=QOYE(SR)JY>qMV&}60~
zc6^mPf+(B2l2X|zZ#W4eHJ*$}@AO%^S3LbbC8gran8vVbAKl&k<DvQLposw_&doAd
zPskgbm)HAdv!0kmb!DRU^GCTaZ&G(ZAGVA8jw8(&z5gFo_M^Ume2Bc0Jvv7$$fL6N
zxA)i&4H7A6G;Pzr2c;#1suJ$B1|;YJ2n=Z`C1gZDiUD_6JRE6kBdmM*-gx+d2`(mz
z@DI_ngMIhwss(9l)x+3@W=}ry<up<Dse0PxR@={1Ks7<>)2?8_pmB^9oCtcymi2w`
z*>v*_BW9k$qE0Ym+=a&VOe^}LZ6uV|G$;|pQ(`yF#aymE1Bb5}Zbn3~6B>DUBl|Bw
zhVatF|90u!W~vvUR03FWQ(GrxUEAbuM8VRHDrP{e7A8jVCIIEZUF$B&Azx2rWPMC%
zLh*+C(1f?%4vN<TO<;df{ueOG^wsI*q)%BDgy~?+X;TypV5@J&ZKdDBoB?b0w!ijj
zDIvp<U+}e+eu4pQt3p+v4r$BaV-B#1SySmiffY=lD)4d<<j78p@)x9;f93zme_fTM
zqWno6@R3cFce<7O|8FYBYvsB>sV96}mLt4sexNKzhvea6WX-P3aldRx{}B;@#oH;i
zRC78@hlIdd4`m@xVd7)%v_B#2K_QFmYJ#xQJ>{<SWx{z==7I|@nTd%ZjjQ+6>7Nr`
zXOYIp1+YBJ5U-KiDCgdpC70~g@PLo@Hut?2Dvt;5q=yLSOjqhz#jwEIxwC26EYk0B
z*G%T|bUSDI$eL9>s^vfj&c70;YwADy@;CjYQ6Efid7l5QcJA`mVEoP-f^hOXpH;3{
z{GR*W3gd-sTF?*TbAs^C@o|X^fqk>9`e~VmEi<YvOR^-Hs=Y?ib(7|5qIlMs$3@fX
zV+O4!JO&Q6jI~AV2q~<#_2Tqj9*)ueDSlrp&QVla^Yn?EprS2KlSJnwUW644g|`g%
zIP!&>%+~6xkDsJr6Bb80cs&vay5|^)XPfC~B|^+dInkxl5ety9Je&D~7ts{*4IZbR
z9vwKlT%{Z8vNpkqO!iAckbN7ex~8$eJo~ks8I^W-DS4%L<lAEYQTiDqiubon(5OpN
zh){y@Q5cm0o6mm{)yI9MS<-L*u}*H)nIZP)RrrL+qEJniLOl@K6!%iISp2V_+tdP2
zbQ-g(;$Ws7QALR6;j)s<H{W+gXx6tn{cxBPIJ;{s8M)lb3k09MiN^?3=6$e#A9UOI
zs=Wfgyy}HSRINQ+>L*`VF>Pd=vOieNe`kO-jtDsBE{!$K^h<8v+lTD9D#@ZE_`;S5
z*ACfksc`g$#CR^!-%z^Cv;Giv{?P^S9pNvF$<;NatR^DY+`cbZ$a_}&G`|>u3J9zW
z(v95n7S-hK{FBNa*qAf;!|{t{C1hEs$8$?$_+jlhJHgb&Yy6WLJKCWq=rmFxwH#%V
zf8Vf398kBia!9m%-IFnscC#=7hi^Uy^6;t;s0`I@QOgg9y_^4>T25ugpOz&hje1}X
zpQ>TptE{ko`ZkyMy`#xq?DL>i8!*|Mn<(nECfnY&FG@ySBuZfShB$h-#XEDIB_-o3
zaUVnSSOX1ruF%fQ^WuHyCFyIIbm>j0f}y)*v^7d#C{Fe@xT9f$FzcPDEhJ*<=eoo~
zW?ME#kL^geSb7e#;48|F&vo9~i~Xz;%*#SZL&KcuIaBEfqh1)DWpGdr`{YjuGZ@FR
n9HNVnpVMi(4fyB3e{`8rjbllE`gW5bK)$d}uIM@k->ZKB{UOL%

literal 1463
zcma)+c~H|w6vuxYmQ!G+6dA6BS_^7bT2K-}2*@c+B8Mmn1d2ouDue=o5|Y#w!~&wI
zWfHDJl|u`(Mgd8L0#&Y%h=>#+BwYRofy59X1Y>^vL1+3$`%iafci--Q-`kz{d9znf
zVtse&Tj&D-u+!hqD;NMY<*<EHR|_70=I9r~ljX_4P;Ur=U~^$<ExowA4&|^n#k`cW
zAQTGW{li0Hci=O<v|wxq0I#>3vu4>#0NCN_@8uDisj*zKT*5>e`V<qN^}ol<CNey_
zzC8D+O^U6os9Y;RejB@CU_y^E&r1PxY1a)UlCJA=fOta=Xd?AfZ7_hB2Ukm%X5W_u
zXqe<GxOHZV9*4R8Bn3a|sZpytNkMWwJm9>jGdSwgoN9wSh;Sh%{+WQwOv|p9t~UJA
zVU9LN0*s^tS;(*y0yUxfXG#h0)B$|^DK|BGGFE=!ru2~KLA&hP01%`(2~CBP4j-=8
zA9owQ*Y}239%TAFRSKij7R3d^B4#*WOEzfNR#<05BH?X8jhP1`vVTs!{l4^$Nkg)v
z;kDg*uX6?7dXj&-FN@Y@m7!KEy2q<}m2bJqf#<wg=6X?4%(buo_D!wjcBZyW0#hgm
zg*NS6CVwQ6jN;&{<3^N^)9mUjxTUXJ5YDCtT*w&|Jee8y<nuOGGn^OV_=}k!_g$&z
z$Oy!W?~O`c>p*Y7{WVh1D0olSu`z?yw{Mzrr2zwiJhO@JHWoFP`5sYR3Ogp0$!q-D
zSygY6AaG{h6%*0Y0#zr|-6x=iOti5{X~#tt3!-j4eLLGbwo+Gv1U0lVrdt8?yB!RV
zqX2Ch&{n92foTETvhNd0R$*8lY{Al=u4UiRF#&90hMGvDFaE{vKM^mN!{VTA@jtM&
zV;Qynfg?`2+DNM|gNheAx_M^S$bB$e^AiZ9`PnpDJ^aLI`y5(y{IEvN$DqdL>Q%UV
z>*W7X4vYV%10|Pe)hmdx=q0MGZ&4OjeI1$6w+b#1%nIL%5{HL4p0?l+=dvw0&!&fe
zGRH1=b}ab5yi`sg;0bL|W7804N*1)+k?F`jx9XJtZu-cg<MG$|kv#4uoj&eTX)$lP
z_TBtNx9kcEG-tp`QqDV*Drpq1a}?<+k3f)a{Q8{#Y$BoWQ0?qS;GU4M?xhTM$s8Uf
z$kA+fsVXVMmv>D2YV?D}J<Ht5BLeAR@sKyJnFUoPPR7P7FWDrcyL3kAV{2&jM&RuL
zHyzXDta;UFKksD>7^+OsY)Ylr;E3U5qlDi@rz`06oU$L~%5>apd||6<Ik4``ScXbQ
zKl|{&mDlwyJQ1FuI?6_!$FZ;&cTh?l{WNTp5!QXbKmHPxKmf;6DA}RBcf{X}5q@?&
z?CjIt3-=z+H9lz(snYxF_~%Cx!)G?J7{Sp_hIq#HD^zi@gSDCp8U&paKiFLn0U{bL
z`3Ob>d$Fh;)oV>sXZM$KK~+dv1FltXK|+>!xbF#mq_Rw>+@2Xu8xUnSk#ty7Q7fY*
zR*iD}iH^32R`<GrD<8hK<aU+|H<!+Wr6n$SBSK5<8F?2cjC_k*CPKYRXU0YD!lS5>
zEBnE*Wfl%Y1xLcCEacU$c$|V=9T^VF#fz<{2ag#$9dj?iM&;MY*j#yIPvkCAFow9+
ztqiz%$o;2_7O7`Iy@faAL5d?YCqhK-9E%)=Dw`%m(Da-lT_8~QG=$yl=PYGEG<z~D
z{zlQ+Dh5}fl$CcZsYG=(aAf^FVLgtK+awUTD>|8CpG_)C$>%GY;j)1&mxuVA&$OpU
z#%jvwxt`oI`i|q=!7N9nUtbnFnP8@eMocQ<nv6FsaJx2ZUL+JjT1U&B7#HMydGHqt
N_<Li$nmnT~{{;c)?hyb0

diff --git a/docs/html/classgridfire_1_1screening_1_1_weak_screening_model-members.html b/docs/html/classgridfire_1_1screening_1_1_weak_screening_model-members.html
index 9b075c9f..e6a92475 100644
--- a/docs/html/classgridfire_1_1screening_1_1_weak_screening_model-members.html
+++ b/docs/html/classgridfire_1_1screening_1_1_weak_screening_model-members.html
@@ -106,9 +106,9 @@ $(function(){initNavTree('classgridfire_1_1screening_1_1_weak_screening_model.ht
 <p>This is the complete list of members for <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">gridfire::screening::WeakScreeningModel</a>, including all inherited members.</p>
 <table class="directory">
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a2695206d46b9d2c2503f8e58c44df88f">calculateFactors_impl</a>(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; T &gt; &amp;Y, const T T9, const T rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">gridfire::screening::WeakScreeningModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c">calculateScreeningFactors</a>(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">gridfire::screening::WeakScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#ac6bc78769670a460af1ff88284cb8ad4">calculateScreeningFactors</a>(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const CppAD::AD&lt; double &gt; T9, const CppAD::AD&lt; double &gt; rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">gridfire::screening::WeakScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#aa9f95ba8c052dacb72295775516b7e5f">calculateFactors_impl</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; T &gt; &amp;Y, T T9, T rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">gridfire::screening::WeakScreeningModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a6a215d082b0d05126fb2b19fd1983446">calculateScreeningFactors</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">gridfire::screening::WeakScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a8b0590814e7058b4ff3f0cd6f4124773">calculateScreeningFactors</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">gridfire::screening::WeakScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">gridfire::screening::WeakScreeningModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
 </table></div><!-- contents -->
diff --git a/docs/html/classgridfire_1_1screening_1_1_weak_screening_model.html b/docs/html/classgridfire_1_1screening_1_1_weak_screening_model.html
index 730f6cc6..f9ac713c 100644
--- a/docs/html/classgridfire_1_1screening_1_1_weak_screening_model.html
+++ b/docs/html/classgridfire_1_1screening_1_1_weak_screening_model.html
@@ -124,12 +124,12 @@ Inheritance diagram for gridfire::screening::WeakScreeningModel:</div>
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
 Public Member Functions</h2></td></tr>
-<tr class="memitem:afbaeaefe6b3ab3ecf81889ddc1cff76c" id="r_afbaeaefe6b3ab3ecf81889ddc1cff76c"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afbaeaefe6b3ab3ecf81889ddc1cff76c">calculateScreeningFactors</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override</td></tr>
-<tr class="memdesc:afbaeaefe6b3ab3ecf81889ddc1cff76c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates weak screening factors for a set of reactions.  <br /></td></tr>
-<tr class="separator:afbaeaefe6b3ab3ecf81889ddc1cff76c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac6bc78769670a460af1ff88284cb8ad4" id="r_ac6bc78769670a460af1ff88284cb8ad4"><td class="memItemLeft" align="right" valign="top">std::vector&lt; CppAD::AD&lt; double &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac6bc78769670a460af1ff88284cb8ad4">calculateScreeningFactors</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const CppAD::AD&lt; double &gt; T9, const CppAD::AD&lt; double &gt; rho) const override</td></tr>
-<tr class="memdesc:ac6bc78769670a460af1ff88284cb8ad4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates weak screening factors using CppAD types.  <br /></td></tr>
-<tr class="separator:ac6bc78769670a460af1ff88284cb8ad4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6a215d082b0d05126fb2b19fd1983446" id="r_a6a215d082b0d05126fb2b19fd1983446"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6a215d082b0d05126fb2b19fd1983446">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a6a215d082b0d05126fb2b19fd1983446"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates weak screening factors for a set of reactions.  <br /></td></tr>
+<tr class="separator:a6a215d082b0d05126fb2b19fd1983446"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8b0590814e7058b4ff3f0cd6f4124773" id="r_a8b0590814e7058b4ff3f0cd6f4124773"><td class="memItemLeft" align="right" valign="top">std::vector&lt; CppAD::AD&lt; double &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8b0590814e7058b4ff3f0cd6f4124773">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho) const override</td></tr>
+<tr class="memdesc:a8b0590814e7058b4ff3f0cd6f4124773"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates weak screening factors using CppAD types.  <br /></td></tr>
+<tr class="separator:a8b0590814e7058b4ff3f0cd6f4124773"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="inherit_header pub_methods_classgridfire_1_1screening_1_1_screening_model"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1screening_1_1_screening_model')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td></tr>
 <tr class="memitem:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1_screening_model" id="r_adef175acdbd911527f56a1f1592579a7"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a> ()=default</td></tr>
 <tr class="memdesc:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1_screening_model"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
@@ -137,10 +137,10 @@ Public Member Functions</h2></td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
 Private Member Functions</h2></td></tr>
-<tr class="memitem:a2695206d46b9d2c2503f8e58c44df88f" id="r_a2695206d46b9d2c2503f8e58c44df88f"><td class="memTemplParams" colspan="2">template&lt;typename T&gt; </td></tr>
-<tr class="memitem:a2695206d46b9d2c2503f8e58c44df88f"><td class="memTemplItemLeft" align="right" valign="top">std::vector&lt; T &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#a2695206d46b9d2c2503f8e58c44df88f">calculateFactors_impl</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; T &gt; &amp;Y, const T T9, const T rho) const</td></tr>
-<tr class="memdesc:a2695206d46b9d2c2503f8e58c44df88f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Template implementation for calculating weak screening factors.  <br /></td></tr>
-<tr class="separator:a2695206d46b9d2c2503f8e58c44df88f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa9f95ba8c052dacb72295775516b7e5f" id="r_aa9f95ba8c052dacb72295775516b7e5f"><td class="memTemplParams" colspan="2">template&lt;typename T&gt; </td></tr>
+<tr class="memitem:aa9f95ba8c052dacb72295775516b7e5f"><td class="memTemplItemLeft" align="right" valign="top">std::vector&lt; T &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#aa9f95ba8c052dacb72295775516b7e5f">calculateFactors_impl</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; T &gt; &amp;Y, T T9, T rho) const</td></tr>
+<tr class="memdesc:aa9f95ba8c052dacb72295775516b7e5f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Template implementation for calculating weak screening factors.  <br /></td></tr>
+<tr class="separator:aa9f95ba8c052dacb72295775516b7e5f"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
 Private Attributes</h2></td></tr>
@@ -159,8 +159,8 @@ Additional Inherited Members</h2></td></tr>
 <div class="textblock"><p>Implements the weak screening model based on the Debye-Hückel approximation. </p>
 <p>This class provides a concrete implementation of the <code><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html" title="An abstract base class for plasma screening models.">ScreeningModel</a></code> interface for the weak screening regime, following the formulation of Salpeter (1954). This approach applies the Debye-Hückel theory to model the electrostatic shielding of nuclei in a plasma. It is applicable to non-degenerate, non-relativistic plasmas where thermal energy dominates the electrostatic potential energy. </p>
 </div><h2 class="groupheader">Member Function Documentation</h2>
-<a id="a2695206d46b9d2c2503f8e58c44df88f" name="a2695206d46b9d2c2503f8e58c44df88f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2695206d46b9d2c2503f8e58c44df88f">&#9670;&#160;</a></span>calculateFactors_impl()</h2>
+<a id="aa9f95ba8c052dacb72295775516b7e5f" name="aa9f95ba8c052dacb72295775516b7e5f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa9f95ba8c052dacb72295775516b7e5f">&#9670;&#160;</a></span>calculateFactors_impl()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -173,7 +173,7 @@ template&lt;typename T&gt; </div>
         <tr>
           <td class="memname">std::vector&lt; T &gt; gridfire::screening::WeakScreeningModel::calculateFactors_impl </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -188,12 +188,12 @@ template&lt;typename T&gt; </div>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const T</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">T</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const T</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">T</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -216,7 +216,7 @@ template&lt;typename T&gt; </div>
   <table class="params">
     <tr><td class="paramname">reactions</td><td>The set of reactions. </td></tr>
     <tr><td class="paramname">species</td><td>A vector of all species in the network. </td></tr>
-    <tr><td class="paramname">Y</td><td>A vector of molar abundances. </td></tr>
+    <tr><td class="paramname">Y</td><td>The composition object with current molar abundances. </td></tr>
     <tr><td class="paramname">T9</td><td>The temperature in 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
   </table>
@@ -234,7 +234,7 @@ template&lt;typename T&gt; </div>
   <table class="params">
     <tr><td class="paramname">reactions</td><td>The set of reactions to be screened. </td></tr>
     <tr><td class="paramname">species</td><td>The list of all species in the network. </td></tr>
-    <tr><td class="paramname">Y</td><td>The molar abundances of the species. </td></tr>
+    <tr><td class="paramname">Y</td><td>The composition object providing current molar abundances. </td></tr>
     <tr><td class="paramname">T9</td><td>The temperature in 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
   </table>
@@ -257,8 +257,8 @@ template&lt;typename T&gt; </div>
 
 </div>
 </div>
-<a id="ac6bc78769670a460af1ff88284cb8ad4" name="ac6bc78769670a460af1ff88284cb8ad4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac6bc78769670a460af1ff88284cb8ad4">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[1/2]</span></h2>
+<a id="a8b0590814e7058b4ff3f0cd6f4124773" name="a8b0590814e7058b4ff3f0cd6f4124773"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8b0590814e7058b4ff3f0cd6f4124773">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[1/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -269,7 +269,7 @@ template&lt;typename T&gt; </div>
         <tr>
           <td class="memname">std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; gridfire::screening::WeakScreeningModel::calculateScreeningFactors </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -284,12 +284,12 @@ template&lt;typename T&gt; </div>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -305,7 +305,7 @@ template&lt;typename T&gt; </div>
   <table class="params">
     <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
     <tr><td class="paramname">species</td><td>A vector of all atomic species involved in the network. </td></tr>
-    <tr><td class="paramname">Y</td><td>A vector of the molar abundances as AD types. </td></tr>
+    <tr><td class="paramname">Y</td><td>The composition object giving the current molar abundances. </td></tr>
     <tr><td class="paramname">T9</td><td>The temperature as an AD type. </td></tr>
     <tr><td class="paramname">rho</td><td>The plasma density as an AD type. </td></tr>
   </table>
@@ -313,12 +313,12 @@ template&lt;typename T&gt; </div>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>A vector of screening factors as AD types. </dd></dl>
 
-<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22">gridfire::screening::ScreeningModel</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a1da8242c7591ab32453d1e0109999d6c">gridfire::screening::ScreeningModel</a>.</p>
 
 </div>
 </div>
-<a id="afbaeaefe6b3ab3ecf81889ddc1cff76c" name="afbaeaefe6b3ab3ecf81889ddc1cff76c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afbaeaefe6b3ab3ecf81889ddc1cff76c">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[2/2]</span></h2>
+<a id="a6a215d082b0d05126fb2b19fd1983446" name="a6a215d082b0d05126fb2b19fd1983446"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6a215d082b0d05126fb2b19fd1983446">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[2/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -329,7 +329,7 @@ template&lt;typename T&gt; </div>
         <tr>
           <td class="memname">std::vector&lt; double &gt; gridfire::screening::WeakScreeningModel::calculateScreeningFactors </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -344,12 +344,12 @@ template&lt;typename T&gt; </div>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;) const</td>
         </tr>
       </table>
   </td>
@@ -365,7 +365,7 @@ template&lt;typename T&gt; </div>
   <table class="params">
     <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
     <tr><td class="paramname">species</td><td>A vector of all atomic species involved in the network. </td></tr>
-    <tr><td class="paramname">Y</td><td>A vector of the molar abundances (mol/g) for each species. </td></tr>
+    <tr><td class="paramname">Y</td><td>The composition object giving the current molar abundances. </td></tr>
     <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>The plasma density in g/cm^3. </td></tr>
   </table>
@@ -374,13 +374,13 @@ template&lt;typename T&gt; </div>
 <dl class="section return"><dt>Returns</dt><dd>A vector of screening factors (dimensionless), one for each reaction.</dd></dl>
 <p><b>Usage</b> </p><div class="fragment"><div class="line"><a class="code hl_class" href="classgridfire_1_1screening_1_1_weak_screening_model.html">WeakScreeningModel</a> weak_model;</div>
 <div class="line"><span class="comment">// ... (initialize reactions, species, Y, T9, rho)</span></div>
-<div class="line">std::vector&lt;double&gt; factors = weak_model.<a class="code hl_function" href="#afbaeaefe6b3ab3ecf81889ddc1cff76c">calculateScreeningFactors</a>(</div>
+<div class="line">std::vector&lt;double&gt; factors = weak_model.<a class="code hl_function" href="#a6a215d082b0d05126fb2b19fd1983446">calculateScreeningFactors</a>(</div>
 <div class="line">    reactions, species, Y, T9, rho</div>
 <div class="line">);</div>
 <div class="ttc" id="aclassgridfire_1_1screening_1_1_weak_screening_model_html"><div class="ttname"><a href="classgridfire_1_1screening_1_1_weak_screening_model.html">gridfire::screening::WeakScreeningModel</a></div><div class="ttdoc">Implements the weak screening model based on the Debye-Hückel approximation.</div><div class="ttdef"><b>Definition</b> screening_weak.h:26</div></div>
-<div class="ttc" id="aclassgridfire_1_1screening_1_1_weak_screening_model_html_afbaeaefe6b3ab3ecf81889ddc1cff76c"><div class="ttname"><a href="#afbaeaefe6b3ab3ecf81889ddc1cff76c">gridfire::screening::WeakScreeningModel::calculateScreeningFactors</a></div><div class="ttdeci">std::vector&lt; double &gt; calculateScreeningFactors(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override</div><div class="ttdoc">Calculates weak screening factors for a set of reactions.</div><div class="ttdef"><b>Definition</b> screening_weak.cpp:22</div></div>
+<div class="ttc" id="aclassgridfire_1_1screening_1_1_weak_screening_model_html_a6a215d082b0d05126fb2b19fd1983446"><div class="ttname"><a href="#a6a215d082b0d05126fb2b19fd1983446">gridfire::screening::WeakScreeningModel::calculateScreeningFactors</a></div><div class="ttdeci">std::vector&lt; double &gt; calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</div><div class="ttdoc">Calculates weak screening factors for a set of reactions.</div><div class="ttdef"><b>Definition</b> screening_weak.cpp:22</div></div>
 </div><!-- fragment --> 
-<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde">gridfire::screening::ScreeningModel</a>.</p>
+<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#ab08c4490f9da18254a7c6f29be1f62ce">gridfire::screening::ScreeningModel</a>.</p>
 
 </div>
 </div>
diff --git a/docs/html/classgridfire_1_1screening_1_1_weak_screening_model.js b/docs/html/classgridfire_1_1screening_1_1_weak_screening_model.js
index 35f16253..db4a9982 100644
--- a/docs/html/classgridfire_1_1screening_1_1_weak_screening_model.js
+++ b/docs/html/classgridfire_1_1screening_1_1_weak_screening_model.js
@@ -1,7 +1,7 @@
 var classgridfire_1_1screening_1_1_weak_screening_model =
 [
-    [ "calculateFactors_impl", "classgridfire_1_1screening_1_1_weak_screening_model.html#a2695206d46b9d2c2503f8e58c44df88f", null ],
-    [ "calculateScreeningFactors", "classgridfire_1_1screening_1_1_weak_screening_model.html#ac6bc78769670a460af1ff88284cb8ad4", null ],
-    [ "calculateScreeningFactors", "classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c", null ],
+    [ "calculateFactors_impl", "classgridfire_1_1screening_1_1_weak_screening_model.html#aa9f95ba8c052dacb72295775516b7e5f", null ],
+    [ "calculateScreeningFactors", "classgridfire_1_1screening_1_1_weak_screening_model.html#a8b0590814e7058b4ff3f0cd6f4124773", null ],
+    [ "calculateScreeningFactors", "classgridfire_1_1screening_1_1_weak_screening_model.html#a6a215d082b0d05126fb2b19fd1983446", null ],
     [ "m_logger", "classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy-members.html b/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy-members.html
new file mode 100644
index 00000000..373f2a40
--- /dev/null
+++ b/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy-members.html
@@ -0,0 +1,153 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::solver::CVODESolverStrategy Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a38e0f02ba54e217e9638260d9651b1c3">calculate_rhs</a>(sunrealtype t, N_Vector y, N_Vector ydot, const CVODEUserData *data) const</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a7f6786780137de1a136e081c537a9667">cleanup_cvode_resources</a>(bool memFree)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ae13fc9c21f595edbee1c9b7debaa61b3">cvode_jac_wrapper</a>(sunrealtype t, N_Vector y, N_Vector ydot, SUNMatrix J, void *user_data, N_Vector tmp1, N_Vector tmp2, N_Vector tmp3)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a14c620ef75749c8ef3dfdb84132e5620">cvode_rhs_wrapper</a>(sunrealtype t, N_Vector y, N_Vector ydot, void *user_data)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a924a541da3b205818f90b50d675631c0">CVODESolverStrategy</a>(DynamicEngine &amp;engine)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a2fa56a2e7a63d31d2afa895a5e4fe827">CVODESolverStrategy</a>(const CVODESolverStrategy &amp;)=delete</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a1f007d68e808ba61f8425d0487432c0d">CVODESolverStrategy</a>(CVODESolverStrategy &amp;&amp;)=delete</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5dfb7a2ce0008d41dee4aa596a4e1ce4">describe_callback_context</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab8224d205ea3a28d9c723631c2f00b53">evaluate</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a87b7b39e2a15cc30b118c8e6fda9a1a6">get_stdout_logging_enabled</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afc6c55237df4af240c4c842305085d91">initialize_cvode_integration_resources</a>(uint64_t N, size_t numSpecies, double current_time, const fourdst::composition::Composition &amp;composition, double absTol, double relTol, double accumulatedEnergy)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a53c14f504e5b7827b4bab4a0a7a13341">log_step_diagnostics</a>(const CVODEUserData &amp;user_data) const</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50c7b4e1ff2c88ce424c745478414e30">m_callback</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a202fe9e6499aac5f6813e036ee4ed2d5">m_config</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50d8f309ca897fa83b16db0a1701b339">m_constraints</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab5a8fa55e36685cac50c1dbdd8dbfa57">m_cvode_mem</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">gridfire::solver::NetworkSolverStrategy&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">gridfire::solver::NetworkSolverStrategy&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afd1053d0827512b6831ee15f14488c20">m_J</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5867eb99b00815b8b4f710cb48904dbe">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af4a2f003a4c4c06b4b72840f2d445f81">m_LS</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab7495898e893640670f49308a105658f">m_num_steps</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af3e470b5a6f982c107785c64b169a992">m_stdout_logging_enabled</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ac57a4f62d95d769c379470e680e6882d">m_sun_ctx</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aae19c1ec467051404a7bf1d4c7066c22">m_Y</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a0717afcde6fdb71b12490bbcadb5fdb4">m_YErr</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505">NetworkSolverStrategy</a>(DynamicEngine &amp;engine)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">gridfire::solver::NetworkSolverStrategy&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505">NetworkSolverStrategy</a>(DynamicEngine &amp;engine)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">gridfire::solver::NetworkSolverStrategy&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af500df838024c82724eaf7fe1cb9b8e8">operator=</a>(const CVODESolverStrategy &amp;)=delete</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ad26879fafcee9ecb21cc7c5ac0db1692">operator=</a>(CVODESolverStrategy &amp;&amp;)=delete</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a77638ef3d2279009e5a57bbd3f0eb63b">set_callback</a>(const std::any &amp;callback) override</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a46dacb6eb075f2aadac0e56972deeaa3">set_stdout_logging_enabled</a>(const bool value)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a89c537c2f34ba3e202374304b7e5990a">TimestepCallback</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aca2d01a907c3bb828f9f99ad05506578">~CVODESolverStrategy</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318">~NetworkSolverStrategy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">gridfire::solver::NetworkSolverStrategy&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318">~NetworkSolverStrategy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">gridfire::solver::NetworkSolverStrategy&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html b/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html
new file mode 100644
index 00000000..5f24d48e
--- /dev/null
+++ b/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html
@@ -0,0 +1,1206 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::solver::CVODESolverStrategy Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#pub-types">Public Types</a> &#124;
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-static-methods">Static Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::solver::CVODESolverStrategy Class Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Stiff ODE integrator backed by SUNDIALS CVODE (BDF) for network + energy.  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;CVODE_solver_strategy.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::solver::CVODESolverStrategy:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.png" usemap="#gridfire::solver::CVODESolverStrategy_map" alt=""/>
+  <map id="gridfire::solver::CVODESolverStrategy_map" name="gridfire::solver::CVODESolverStrategy_map">
+<area href="classgridfire_1_1solver_1_1_network_solver_strategy.html" alt="gridfire::solver::NetworkSolverStrategy&lt; DynamicEngine &gt;" shape="rect" coords="0,0,342,24"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">CVODEUserData</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A helper struct to pass C++ context to C-style CVODE callbacks.  <a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">TimestepContext</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Immutable view of the current integration state passed to callbacks.  <a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-types" name="pub-types"></a>
+Public Types</h2></td></tr>
+<tr class="memitem:a89c537c2f34ba3e202374304b7e5990a" id="r_a89c537c2f34ba3e202374304b7e5990a"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a89c537c2f34ba3e202374304b7e5990a">TimestepCallback</a> = std::function&lt;void(const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">TimestepContext</a>&amp; context)&gt;</td></tr>
+<tr class="memdesc:a89c537c2f34ba3e202374304b7e5990a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Type alias for a timestep callback.  <br /></td></tr>
+<tr class="separator:a89c537c2f34ba3e202374304b7e5990a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a924a541da3b205818f90b50d675631c0" id="r_a924a541da3b205818f90b50d675631c0"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a924a541da3b205818f90b50d675631c0">CVODESolverStrategy</a> (<a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine)</td></tr>
+<tr class="memdesc:a924a541da3b205818f90b50d675631c0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct the CVODE strategy and create a SUNDIALS context.  <br /></td></tr>
+<tr class="separator:a924a541da3b205818f90b50d675631c0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aca2d01a907c3bb828f9f99ad05506578" id="r_aca2d01a907c3bb828f9f99ad05506578"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aca2d01a907c3bb828f9f99ad05506578">~CVODESolverStrategy</a> () override</td></tr>
+<tr class="memdesc:aca2d01a907c3bb828f9f99ad05506578"><td class="mdescLeft">&#160;</td><td class="mdescRight">Destructor: cleans CVODE/SUNDIALS resources and frees SUNContext.  <br /></td></tr>
+<tr class="separator:aca2d01a907c3bb828f9f99ad05506578"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2fa56a2e7a63d31d2afa895a5e4fe827" id="r_a2fa56a2e7a63d31d2afa895a5e4fe827"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2fa56a2e7a63d31d2afa895a5e4fe827">CVODESolverStrategy</a> (const <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a> &amp;)=delete</td></tr>
+<tr class="separator:a2fa56a2e7a63d31d2afa895a5e4fe827"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af500df838024c82724eaf7fe1cb9b8e8" id="r_af500df838024c82724eaf7fe1cb9b8e8"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af500df838024c82724eaf7fe1cb9b8e8">operator=</a> (const <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a> &amp;)=delete</td></tr>
+<tr class="separator:af500df838024c82724eaf7fe1cb9b8e8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1f007d68e808ba61f8425d0487432c0d" id="r_a1f007d68e808ba61f8425d0487432c0d"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1f007d68e808ba61f8425d0487432c0d">CVODESolverStrategy</a> (<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a> &amp;&amp;)=delete</td></tr>
+<tr class="separator:a1f007d68e808ba61f8425d0487432c0d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad26879fafcee9ecb21cc7c5ac0db1692" id="r_ad26879fafcee9ecb21cc7c5ac0db1692"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad26879fafcee9ecb21cc7c5ac0db1692">operator=</a> (<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a> &amp;&amp;)=delete</td></tr>
+<tr class="separator:ad26879fafcee9ecb21cc7c5ac0db1692"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab8224d205ea3a28d9c723631c2f00b53" id="r_ab8224d205ea3a28d9c723631c2f00b53"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_net_out.html">NetOut</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab8224d205ea3a28d9c723631c2f00b53">evaluate</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn) override</td></tr>
+<tr class="memdesc:ab8224d205ea3a28d9c723631c2f00b53"><td class="mdescLeft">&#160;</td><td class="mdescRight">Integrate from t=0 to netIn.tMax and return final composition and energy.  <br /></td></tr>
+<tr class="separator:ab8224d205ea3a28d9c723631c2f00b53"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a77638ef3d2279009e5a57bbd3f0eb63b" id="r_a77638ef3d2279009e5a57bbd3f0eb63b"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a77638ef3d2279009e5a57bbd3f0eb63b">set_callback</a> (const std::any &amp;callback) override</td></tr>
+<tr class="memdesc:a77638ef3d2279009e5a57bbd3f0eb63b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Install a timestep callback.  <br /></td></tr>
+<tr class="separator:a77638ef3d2279009e5a57bbd3f0eb63b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a87b7b39e2a15cc30b118c8e6fda9a1a6" id="r_a87b7b39e2a15cc30b118c8e6fda9a1a6"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a87b7b39e2a15cc30b118c8e6fda9a1a6">get_stdout_logging_enabled</a> () const</td></tr>
+<tr class="memdesc:a87b7b39e2a15cc30b118c8e6fda9a1a6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Whether per-step logs are printed to stdout and CVode is stepped with CV_ONE_STEP.  <br /></td></tr>
+<tr class="separator:a87b7b39e2a15cc30b118c8e6fda9a1a6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a46dacb6eb075f2aadac0e56972deeaa3" id="r_a46dacb6eb075f2aadac0e56972deeaa3"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a46dacb6eb075f2aadac0e56972deeaa3">set_stdout_logging_enabled</a> (const bool value)</td></tr>
+<tr class="memdesc:a46dacb6eb075f2aadac0e56972deeaa3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Enable/disable per-step stdout logging.  <br /></td></tr>
+<tr class="separator:a46dacb6eb075f2aadac0e56972deeaa3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5dfb7a2ce0008d41dee4aa596a4e1ce4" id="r_a5dfb7a2ce0008d41dee4aa596a4e1ce4"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::tuple&lt; std::string, std::string &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5dfb7a2ce0008d41dee4aa596a4e1ce4">describe_callback_context</a> () const override</td></tr>
+<tr class="memdesc:a5dfb7a2ce0008d41dee4aa596a4e1ce4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Schema of fields exposed to the timestep callback context.  <br /></td></tr>
+<tr class="separator:a5dfb7a2ce0008d41dee4aa596a4e1ce4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1solver_1_1_network_solver_strategy"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1solver_1_1_network_solver_strategy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">gridfire::solver::NetworkSolverStrategy&lt; DynamicEngine &gt;</a></td></tr>
+<tr class="memitem:a01cbbec0eb5c3a60f50da38cdaf66505 inherit pub_methods_classgridfire_1_1solver_1_1_network_solver_strategy" id="r_a01cbbec0eb5c3a60f50da38cdaf66505"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505">NetworkSolverStrategy</a> (<a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine)</td></tr>
+<tr class="memdesc:a01cbbec0eb5c3a60f50da38cdaf66505 inherit pub_methods_classgridfire_1_1solver_1_1_network_solver_strategy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor for the <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html" title="Abstract base class for network solver strategies.">NetworkSolverStrategy</a>.  <br /></td></tr>
+<tr class="separator:a01cbbec0eb5c3a60f50da38cdaf66505 inherit pub_methods_classgridfire_1_1solver_1_1_network_solver_strategy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1693dc93f63599c89587d729aca8e318 inherit pub_methods_classgridfire_1_1solver_1_1_network_solver_strategy" id="r_a1693dc93f63599c89587d729aca8e318"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318">~NetworkSolverStrategy</a> ()=default</td></tr>
+<tr class="memdesc:a1693dc93f63599c89587d729aca8e318 inherit pub_methods_classgridfire_1_1solver_1_1_network_solver_strategy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:a1693dc93f63599c89587d729aca8e318 inherit pub_methods_classgridfire_1_1solver_1_1_network_solver_strategy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a01cbbec0eb5c3a60f50da38cdaf66505 inherit pub_methods_classgridfire_1_1solver_1_1_network_solver_strategy" id="r_a01cbbec0eb5c3a60f50da38cdaf66505"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505">NetworkSolverStrategy</a> (<a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine)</td></tr>
+<tr class="memdesc:a01cbbec0eb5c3a60f50da38cdaf66505 inherit pub_methods_classgridfire_1_1solver_1_1_network_solver_strategy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor for the <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html" title="Abstract base class for network solver strategies.">NetworkSolverStrategy</a>.  <br /></td></tr>
+<tr class="separator:a01cbbec0eb5c3a60f50da38cdaf66505 inherit pub_methods_classgridfire_1_1solver_1_1_network_solver_strategy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1693dc93f63599c89587d729aca8e318 inherit pub_methods_classgridfire_1_1solver_1_1_network_solver_strategy" id="r_a1693dc93f63599c89587d729aca8e318"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318">~NetworkSolverStrategy</a> ()=default</td></tr>
+<tr class="memdesc:a1693dc93f63599c89587d729aca8e318 inherit pub_methods_classgridfire_1_1solver_1_1_network_solver_strategy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:a1693dc93f63599c89587d729aca8e318 inherit pub_methods_classgridfire_1_1solver_1_1_network_solver_strategy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:a38e0f02ba54e217e9638260d9651b1c3" id="r_a38e0f02ba54e217e9638260d9651b1c3"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a38e0f02ba54e217e9638260d9651b1c3">calculate_rhs</a> (sunrealtype t, N_Vector y, N_Vector ydot, const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">CVODEUserData</a> *data) const</td></tr>
+<tr class="memdesc:a38e0f02ba54e217e9638260d9651b1c3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute RHS into ydot at time t from the engine and current state y.  <br /></td></tr>
+<tr class="separator:a38e0f02ba54e217e9638260d9651b1c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afc6c55237df4af240c4c842305085d91" id="r_afc6c55237df4af240c4c842305085d91"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afc6c55237df4af240c4c842305085d91">initialize_cvode_integration_resources</a> (uint64_t N, size_t numSpecies, double current_time, const fourdst::composition::Composition &amp;composition, double absTol, double relTol, double accumulatedEnergy)</td></tr>
+<tr class="memdesc:afc6c55237df4af240c4c842305085d91"><td class="mdescLeft">&#160;</td><td class="mdescRight">Allocate and initialize CVODE vectors, linear algebra, tolerances, and constraints.  <br /></td></tr>
+<tr class="separator:afc6c55237df4af240c4c842305085d91"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7f6786780137de1a136e081c537a9667" id="r_a7f6786780137de1a136e081c537a9667"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7f6786780137de1a136e081c537a9667">cleanup_cvode_resources</a> (bool memFree)</td></tr>
+<tr class="memdesc:a7f6786780137de1a136e081c537a9667"><td class="mdescLeft">&#160;</td><td class="mdescRight">Destroy CVODE vectors/linear algebra and optionally the CVODE memory block.  <br /></td></tr>
+<tr class="separator:a7f6786780137de1a136e081c537a9667"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a53c14f504e5b7827b4bab4a0a7a13341" id="r_a53c14f504e5b7827b4bab4a0a7a13341"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a53c14f504e5b7827b4bab4a0a7a13341">log_step_diagnostics</a> (const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">CVODEUserData</a> &amp;user_data) const</td></tr>
+<tr class="memdesc:a53c14f504e5b7827b4bab4a0a7a13341"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute and print per-component error ratios; run diagnostic helpers.  <br /></td></tr>
+<tr class="separator:a53c14f504e5b7827b4bab4a0a7a13341"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-static-methods" name="pri-static-methods"></a>
+Static Private Member Functions</h2></td></tr>
+<tr class="memitem:a14c620ef75749c8ef3dfdb84132e5620" id="r_a14c620ef75749c8ef3dfdb84132e5620"><td class="memItemLeft" align="right" valign="top">static int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a14c620ef75749c8ef3dfdb84132e5620">cvode_rhs_wrapper</a> (sunrealtype t, N_Vector y, N_Vector ydot, void *user_data)</td></tr>
+<tr class="memdesc:a14c620ef75749c8ef3dfdb84132e5620"><td class="mdescLeft">&#160;</td><td class="mdescRight">CVODE RHS C-wrapper that delegates to calculate_rhs and captures exceptions.  <br /></td></tr>
+<tr class="separator:a14c620ef75749c8ef3dfdb84132e5620"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae13fc9c21f595edbee1c9b7debaa61b3" id="r_ae13fc9c21f595edbee1c9b7debaa61b3"><td class="memItemLeft" align="right" valign="top">static int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae13fc9c21f595edbee1c9b7debaa61b3">cvode_jac_wrapper</a> (sunrealtype t, N_Vector y, N_Vector ydot, SUNMatrix J, void *user_data, N_Vector tmp1, N_Vector tmp2, N_Vector tmp3)</td></tr>
+<tr class="memdesc:ae13fc9c21f595edbee1c9b7debaa61b3"><td class="mdescLeft">&#160;</td><td class="mdescRight">CVODE dense Jacobian C-wrapper that fills SUNDenseMatrix using the engine.  <br /></td></tr>
+<tr class="separator:ae13fc9c21f595edbee1c9b7debaa61b3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a202fe9e6499aac5f6813e036ee4ed2d5" id="r_a202fe9e6499aac5f6813e036ee4ed2d5"><td class="memItemLeft" align="right" valign="top">fourdst::config::Config &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a202fe9e6499aac5f6813e036ee4ed2d5">m_config</a> = fourdst::config::Config::getInstance()</td></tr>
+<tr class="separator:a202fe9e6499aac5f6813e036ee4ed2d5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5867eb99b00815b8b4f710cb48904dbe" id="r_a5867eb99b00815b8b4f710cb48904dbe"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5867eb99b00815b8b4f710cb48904dbe">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="separator:a5867eb99b00815b8b4f710cb48904dbe"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac57a4f62d95d769c379470e680e6882d" id="r_ac57a4f62d95d769c379470e680e6882d"><td class="memItemLeft" align="right" valign="top">SUNContext&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac57a4f62d95d769c379470e680e6882d">m_sun_ctx</a> = nullptr</td></tr>
+<tr class="memdesc:ac57a4f62d95d769c379470e680e6882d"><td class="mdescLeft">&#160;</td><td class="mdescRight">SUNDIALS context (lifetime of the solver).  <br /></td></tr>
+<tr class="separator:ac57a4f62d95d769c379470e680e6882d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab5a8fa55e36685cac50c1dbdd8dbfa57" id="r_ab5a8fa55e36685cac50c1dbdd8dbfa57"><td class="memItemLeft" align="right" valign="top">void *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab5a8fa55e36685cac50c1dbdd8dbfa57">m_cvode_mem</a> = nullptr</td></tr>
+<tr class="memdesc:ab5a8fa55e36685cac50c1dbdd8dbfa57"><td class="mdescLeft">&#160;</td><td class="mdescRight">CVODE memory block.  <br /></td></tr>
+<tr class="separator:ab5a8fa55e36685cac50c1dbdd8dbfa57"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aae19c1ec467051404a7bf1d4c7066c22" id="r_aae19c1ec467051404a7bf1d4c7066c22"><td class="memItemLeft" align="right" valign="top">N_Vector&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aae19c1ec467051404a7bf1d4c7066c22">m_Y</a> = nullptr</td></tr>
+<tr class="memdesc:aae19c1ec467051404a7bf1d4c7066c22"><td class="mdescLeft">&#160;</td><td class="mdescRight">CVODE state vector (species + energy accumulator).  <br /></td></tr>
+<tr class="separator:aae19c1ec467051404a7bf1d4c7066c22"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0717afcde6fdb71b12490bbcadb5fdb4" id="r_a0717afcde6fdb71b12490bbcadb5fdb4"><td class="memItemLeft" align="right" valign="top">N_Vector&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0717afcde6fdb71b12490bbcadb5fdb4">m_YErr</a> = nullptr</td></tr>
+<tr class="memdesc:a0717afcde6fdb71b12490bbcadb5fdb4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Estimated local errors.  <br /></td></tr>
+<tr class="separator:a0717afcde6fdb71b12490bbcadb5fdb4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afd1053d0827512b6831ee15f14488c20" id="r_afd1053d0827512b6831ee15f14488c20"><td class="memItemLeft" align="right" valign="top">SUNMatrix&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afd1053d0827512b6831ee15f14488c20">m_J</a> = nullptr</td></tr>
+<tr class="memdesc:afd1053d0827512b6831ee15f14488c20"><td class="mdescLeft">&#160;</td><td class="mdescRight">Dense Jacobian matrix.  <br /></td></tr>
+<tr class="separator:afd1053d0827512b6831ee15f14488c20"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af4a2f003a4c4c06b4b72840f2d445f81" id="r_af4a2f003a4c4c06b4b72840f2d445f81"><td class="memItemLeft" align="right" valign="top">SUNLinearSolver&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af4a2f003a4c4c06b4b72840f2d445f81">m_LS</a> = nullptr</td></tr>
+<tr class="memdesc:af4a2f003a4c4c06b4b72840f2d445f81"><td class="mdescLeft">&#160;</td><td class="mdescRight">Dense linear solver.  <br /></td></tr>
+<tr class="separator:af4a2f003a4c4c06b4b72840f2d445f81"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a50c7b4e1ff2c88ce424c745478414e30" id="r_a50c7b4e1ff2c88ce424c745478414e30"><td class="memItemLeft" align="right" valign="top"><a class="el" href="#a89c537c2f34ba3e202374304b7e5990a">TimestepCallback</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a50c7b4e1ff2c88ce424c745478414e30">m_callback</a></td></tr>
+<tr class="memdesc:a50c7b4e1ff2c88ce424c745478414e30"><td class="mdescLeft">&#160;</td><td class="mdescRight">Optional per-step callback.  <br /></td></tr>
+<tr class="separator:a50c7b4e1ff2c88ce424c745478414e30"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab7495898e893640670f49308a105658f" id="r_ab7495898e893640670f49308a105658f"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab7495898e893640670f49308a105658f">m_num_steps</a> = 0</td></tr>
+<tr class="memdesc:ab7495898e893640670f49308a105658f"><td class="mdescLeft">&#160;</td><td class="mdescRight">CVODE step counter (used for diagnostics and triggers).  <br /></td></tr>
+<tr class="separator:ab7495898e893640670f49308a105658f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af3e470b5a6f982c107785c64b169a992" id="r_af3e470b5a6f982c107785c64b169a992"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af3e470b5a6f982c107785c64b169a992">m_stdout_logging_enabled</a> = true</td></tr>
+<tr class="memdesc:af3e470b5a6f982c107785c64b169a992"><td class="mdescLeft">&#160;</td><td class="mdescRight">If true, print per-step logs and use CV_ONE_STEP.  <br /></td></tr>
+<tr class="separator:af3e470b5a6f982c107785c64b169a992"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a50d8f309ca897fa83b16db0a1701b339" id="r_a50d8f309ca897fa83b16db0a1701b339"><td class="memItemLeft" align="right" valign="top">N_Vector&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a50d8f309ca897fa83b16db0a1701b339">m_constraints</a> = nullptr</td></tr>
+<tr class="memdesc:a50d8f309ca897fa83b16db0a1701b339"><td class="mdescLeft">&#160;</td><td class="mdescRight">CVODE constraints vector (&gt;= 0 for species entries).  <br /></td></tr>
+<tr class="separator:a50d8f309ca897fa83b16db0a1701b339"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pro_attribs_classgridfire_1_1solver_1_1_network_solver_strategy"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pro_attribs_classgridfire_1_1solver_1_1_network_solver_strategy')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">gridfire::solver::NetworkSolverStrategy&lt; DynamicEngine &gt;</a></td></tr>
+<tr class="memitem:a724924d94eaf82b67d9988a55c3261e8 inherit pro_attribs_classgridfire_1_1solver_1_1_network_solver_strategy" id="r_a724924d94eaf82b67d9988a55c3261e8"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a></td></tr>
+<tr class="memdesc:a724924d94eaf82b67d9988a55c3261e8 inherit pro_attribs_classgridfire_1_1solver_1_1_network_solver_strategy"><td class="mdescLeft">&#160;</td><td class="mdescRight">The engine used by this solver strategy.  <br /></td></tr>
+<tr class="separator:a724924d94eaf82b67d9988a55c3261e8 inherit pro_attribs_classgridfire_1_1solver_1_1_network_solver_strategy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a724924d94eaf82b67d9988a55c3261e8 inherit pro_attribs_classgridfire_1_1solver_1_1_network_solver_strategy" id="r_a724924d94eaf82b67d9988a55c3261e8"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a></td></tr>
+<tr class="memdesc:a724924d94eaf82b67d9988a55c3261e8 inherit pro_attribs_classgridfire_1_1solver_1_1_network_solver_strategy"><td class="mdescLeft">&#160;</td><td class="mdescRight">The engine used by this solver strategy.  <br /></td></tr>
+<tr class="separator:a724924d94eaf82b67d9988a55c3261e8 inherit pro_attribs_classgridfire_1_1solver_1_1_network_solver_strategy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Stiff ODE integrator backed by SUNDIALS CVODE (BDF) for network + energy. </p>
+<p>Integrates the nuclear network abundances along with a final accumulator entry for specific energy using CVODE's BDF method and a dense linear solver. The state vector layout is: [y_0, y_1, ..., y_{N-1}, eps], where eps is the accumulated specific energy (erg/g).</p>
+<p>Implementation summary:</p><ul>
+<li>Creates a SUNContext and CVODE memory; initializes the state from a Composition.</li>
+<li>Enforces non-negativity on species via CVodeSetConstraints (&gt;= 0 for all species slots).</li>
+<li>Uses a user-provided <a class="el" href="classgridfire_1_1_dynamic_engine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> to compute RHS and to fill the dense Jacobian.</li>
+<li>The Jacobian is assembled column-major into a SUNDenseMatrix; the energy row/column is currently set to zero (decoupled from abundances in the linearization).</li>
+<li>An internal trigger can rebuild the engine/network; when triggered, CVODE resources are torn down and recreated with the new network size, preserving the energy accumulator.</li>
+<li>The CVODE RHS wrapper captures <a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html">exceptions::StaleEngineTrigger</a> from the engine evaluation path as recoverable (return code 1) and stores a copy in user-data for the driver loop.</li>
+</ul>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">using </span><a class="code hl_class" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a>;</div>
+<div class="line"><span class="keyword">using </span>gridfire::solver::NetIn;</div>
+<div class="line"> </div>
+<div class="line"><a class="code hl_function" href="#a924a541da3b205818f90b50d675631c0">CVODESolverStrategy</a> <a class="code hl_namespace" href="namespacegridfire_1_1solver.html">solver</a>(engine);</div>
+<div class="line"><a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a> in;</div>
+<div class="line">in.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be">temperature</a> = 1.0e9; <span class="comment">// K</span></div>
+<div class="line">in.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577">density</a> = 1.0e6;     <span class="comment">// g/cm^3</span></div>
+<div class="line">in.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1">tMax</a> = 1.0;          <span class="comment">// s</span></div>
+<div class="line">in.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">composition</a> = initialComposition;</div>
+<div class="line"><span class="keyword">auto</span> out = <a class="code hl_namespace" href="namespacegridfire_1_1solver.html">solver</a>.evaluate(in);</div>
+<div class="line">std::cout &lt;&lt; <span class="stringliteral">&quot;Final energy: &quot;</span> &lt;&lt; out.energy &lt;&lt; <span class="stringliteral">&quot; erg/g\n&quot;</span>;</div>
+<div class="ttc" id="aclassgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_html"><div class="ttname"><a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></div><div class="ttdoc">Stiff ODE integrator backed by SUNDIALS CVODE (BDF) for network + energy.</div><div class="ttdef"><b>Definition</b> CVODE_solver_strategy.h:77</div></div>
+<div class="ttc" id="aclassgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_html_a924a541da3b205818f90b50d675631c0"><div class="ttname"><a href="#a924a541da3b205818f90b50d675631c0">gridfire::solver::CVODESolverStrategy::CVODESolverStrategy</a></div><div class="ttdeci">CVODESolverStrategy(DynamicEngine &amp;engine)</div><div class="ttdoc">Construct the CVODE strategy and create a SUNDIALS context.</div><div class="ttdef"><b>Definition</b> CVODE_solver_strategy.cpp:121</div></div>
+<div class="ttc" id="anamespacegridfire_1_1solver_html"><div class="ttname"><a href="namespacegridfire_1_1solver.html">gridfire::solver</a></div><div class="ttdef"><b>Definition</b> solver.h:12</div></div>
+<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> network.h:51</div></div>
+<div class="ttc" id="astructgridfire_1_1_net_in_html_a06f0dff9f8927b7cf2da3004c8fa1577"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577">gridfire::NetIn::density</a></div><div class="ttdeci">double density</div><div class="ttdoc">Density in g/cm^3.</div><div class="ttdef"><b>Definition</b> network.h:56</div></div>
+<div class="ttc" id="astructgridfire_1_1_net_in_html_a0a8d820cfeaa92ee31f253795c57e0d1"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1">gridfire::NetIn::tMax</a></div><div class="ttdeci">double tMax</div><div class="ttdoc">Maximum time.</div><div class="ttdef"><b>Definition</b> network.h:53</div></div>
+<div class="ttc" id="astructgridfire_1_1_net_in_html_a13058f4929e72c1187abbebcddb8aed1"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">gridfire::NetIn::composition</a></div><div class="ttdeci">fourdst::composition::Composition composition</div><div class="ttdoc">Composition of the network.</div><div class="ttdef"><b>Definition</b> network.h:52</div></div>
+<div class="ttc" id="astructgridfire_1_1_net_in_html_a5be0f5195a5cd1dd177b9fc5ab83a7be"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be">gridfire::NetIn::temperature</a></div><div class="ttdeci">double temperature</div><div class="ttdoc">Temperature in Kelvin.</div><div class="ttdef"><b>Definition</b> network.h:55</div></div>
+</div><!-- fragment --> </dd></dl>
+</div><h2 class="groupheader">Member Typedef Documentation</h2>
+<a id="a89c537c2f34ba3e202374304b7e5990a" name="a89c537c2f34ba3e202374304b7e5990a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a89c537c2f34ba3e202374304b7e5990a">&#9670;&#160;</a></span>TimestepCallback</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">using <a class="el" href="#a89c537c2f34ba3e202374304b7e5990a">gridfire::solver::CVODESolverStrategy::TimestepCallback</a> = std::function&lt;void(const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">TimestepContext</a>&amp; context)&gt;</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Type alias for a timestep callback. </p>
+<p>Type alias for a timestep callback function. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a924a541da3b205818f90b50d675631c0" name="a924a541da3b205818f90b50d675631c0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a924a541da3b205818f90b50d675631c0">&#9670;&#160;</a></span>CVODESolverStrategy() <span class="overload">[1/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::solver::CVODESolverStrategy::CVODESolverStrategy </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>engine</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel explicit">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct the CVODE strategy and create a SUNDIALS context. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">engine</td><td><a class="el" href="classgridfire_1_1_dynamic_engine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> used for RHS/Jacobian evaluation and network access. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If SUNContext_Create fails. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="aca2d01a907c3bb828f9f99ad05506578" name="aca2d01a907c3bb828f9f99ad05506578"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aca2d01a907c3bb828f9f99ad05506578">&#9670;&#160;</a></span>~CVODESolverStrategy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::solver::CVODESolverStrategy::~CVODESolverStrategy </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Destructor: cleans CVODE/SUNDIALS resources and frees SUNContext. </p>
+
+</div>
+</div>
+<a id="a2fa56a2e7a63d31d2afa895a5e4fe827" name="a2fa56a2e7a63d31d2afa895a5e4fe827"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2fa56a2e7a63d31d2afa895a5e4fe827">&#9670;&#160;</a></span>CVODESolverStrategy() <span class="overload">[2/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::solver::CVODESolverStrategy::CVODESolverStrategy </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a> &amp;</td>          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel delete">delete</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a1f007d68e808ba61f8425d0487432c0d" name="a1f007d68e808ba61f8425d0487432c0d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1f007d68e808ba61f8425d0487432c0d">&#9670;&#160;</a></span>CVODESolverStrategy() <span class="overload">[3/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::solver::CVODESolverStrategy::CVODESolverStrategy </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a> &amp;&amp;</td>          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel delete">delete</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a38e0f02ba54e217e9638260d9651b1c3" name="a38e0f02ba54e217e9638260d9651b1c3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a38e0f02ba54e217e9638260d9651b1c3">&#9670;&#160;</a></span>calculate_rhs()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::solver::CVODESolverStrategy::calculate_rhs </td>
+          <td>(</td>
+          <td class="paramtype">sunrealtype</td>          <td class="paramname"><span class="paramname"><em>t</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector</td>          <td class="paramname"><span class="paramname"><em>y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector</td>          <td class="paramname"><span class="paramname"><em>ydot</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">CVODEUserData</a> *</td>          <td class="paramname"><span class="paramname"><em>data</em></span>&#160;) const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Compute RHS into ydot at time t from the engine and current state y. </p>
+<p>Converts the CVODE state to a Composition (mass fractions) and calls engine.calculateRHSAndEnergy(T9, rho). Negative small abundances are clamped to zero before constructing Composition. On stale engine, throws <a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html">exceptions::StaleEngineTrigger</a>. </p>
+
+</div>
+</div>
+<a id="a7f6786780137de1a136e081c537a9667" name="a7f6786780137de1a136e081c537a9667"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7f6786780137de1a136e081c537a9667">&#9670;&#160;</a></span>cleanup_cvode_resources()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::solver::CVODESolverStrategy::cleanup_cvode_resources </td>
+          <td>(</td>
+          <td class="paramtype">bool</td>          <td class="paramname"><span class="paramname"><em>memFree</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Destroy CVODE vectors/linear algebra and optionally the CVODE memory block. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">memFree</td><td>If true, also calls CVodeFree on m_cvode_mem. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="ae13fc9c21f595edbee1c9b7debaa61b3" name="ae13fc9c21f595edbee1c9b7debaa61b3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae13fc9c21f595edbee1c9b7debaa61b3">&#9670;&#160;</a></span>cvode_jac_wrapper()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::solver::CVODESolverStrategy::cvode_jac_wrapper </td>
+          <td>(</td>
+          <td class="paramtype">sunrealtype</td>          <td class="paramname"><span class="paramname"><em>t</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector</td>          <td class="paramname"><span class="paramname"><em>y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector</td>          <td class="paramname"><span class="paramname"><em>ydot</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">SUNMatrix</td>          <td class="paramname"><span class="paramname"><em>J</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">void *</td>          <td class="paramname"><span class="paramname"><em>user_data</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector</td>          <td class="paramname"><span class="paramname"><em>tmp1</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector</td>          <td class="paramname"><span class="paramname"><em>tmp2</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector</td>          <td class="paramname"><span class="paramname"><em>tmp3</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel static">static</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>CVODE dense Jacobian C-wrapper that fills SUNDenseMatrix using the engine. </p>
+<p>Assembles J(i,j) = d(f_i)/d(y_j) for all species using engine-&gt;getJacobianMatrixEntry, then zeros the last row and column corresponding to the energy variable. </p>
+
+</div>
+</div>
+<a id="a14c620ef75749c8ef3dfdb84132e5620" name="a14c620ef75749c8ef3dfdb84132e5620"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a14c620ef75749c8ef3dfdb84132e5620">&#9670;&#160;</a></span>cvode_rhs_wrapper()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::solver::CVODESolverStrategy::cvode_rhs_wrapper </td>
+          <td>(</td>
+          <td class="paramtype">sunrealtype</td>          <td class="paramname"><span class="paramname"><em>t</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector</td>          <td class="paramname"><span class="paramname"><em>y</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector</td>          <td class="paramname"><span class="paramname"><em>ydot</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">void *</td>          <td class="paramname"><span class="paramname"><em>user_data</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel static">static</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>CVODE RHS C-wrapper that delegates to calculate_rhs and captures exceptions. </p>
+<dl class="section return"><dt>Returns</dt><dd>0 on success; 1 on recoverable StaleEngineTrigger; -1 on other failures. </dd></dl>
+
+</div>
+</div>
+<a id="a5dfb7a2ce0008d41dee4aa596a4e1ce4" name="a5dfb7a2ce0008d41dee4aa596a4e1ce4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5dfb7a2ce0008d41dee4aa596a4e1ce4">&#9670;&#160;</a></span>describe_callback_context()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; std::tuple&lt; std::string, std::string &gt; &gt; gridfire::solver::CVODESolverStrategy::describe_callback_context </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Schema of fields exposed to the timestep callback context. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#ae09169769774f17df8701c42a64ed656">gridfire::solver::NetworkSolverStrategy&lt; DynamicEngine &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ab8224d205ea3a28d9c723631c2f00b53" name="ab8224d205ea3a28d9c723631c2f00b53"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab8224d205ea3a28d9c723631c2f00b53">&#9670;&#160;</a></span>evaluate()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1_net_out.html">NetOut</a> gridfire::solver::CVODESolverStrategy::evaluate </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>netIn</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Integrate from t=0 to netIn.tMax and return final composition and energy. </p>
+<p>Implementation summary:</p><ul>
+<li>Converts temperature to T9, initializes CVODE memory and state (size = numSpecies + 1).</li>
+<li>Repeatedly calls CVode in single-step or normal mode depending on stdout logging.</li>
+<li>Wraps RHS to capture <a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html">exceptions::StaleEngineTrigger</a> as a recoverable step failure; if present after a step, it is rethrown for upstream handling.</li>
+<li>Prints/collects diagnostics per step (step size, energy, solver iterations).</li>
+<li>On trigger activation, rebuilds CVODE resources to reflect a changed network and reinitializes the state using the latest engine composition, preserving energy.</li>
+<li>At the end, converts molar abundances to mass fractions and assembles <a class="el" href="structgridfire_1_1_net_out.html">NetOut</a>, including derivatives of energy w.r.t. T and rho from the engine.</li>
+</ul>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>Inputs: temperature [K], density [g cm^-3], tMax [s], composition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1_net_out.html">NetOut</a> containing final Composition, accumulated energy [erg/g], step count, and dEps/dT, dEps/dRho. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If any CVODE or SUNDIALS call fails (negative return codes), or if internal consistency checks fail during engine updates. </td></tr>
+    <tr><td class="paramname"><a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html">exceptions::StaleEngineTrigger</a></td><td>Propagated if the engine signals a stale state during RHS evaluation (captured in the wrapper then rethrown here). </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f">gridfire::solver::NetworkSolverStrategy&lt; DynamicEngine &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a87b7b39e2a15cc30b118c8e6fda9a1a6" name="a87b7b39e2a15cc30b118c8e6fda9a1a6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a87b7b39e2a15cc30b118c8e6fda9a1a6">&#9670;&#160;</a></span>get_stdout_logging_enabled()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::solver::CVODESolverStrategy::get_stdout_logging_enabled </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Whether per-step logs are printed to stdout and CVode is stepped with CV_ONE_STEP. </p>
+
+</div>
+</div>
+<a id="afc6c55237df4af240c4c842305085d91" name="afc6c55237df4af240c4c842305085d91"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afc6c55237df4af240c4c842305085d91">&#9670;&#160;</a></span>initialize_cvode_integration_resources()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::solver::CVODESolverStrategy::initialize_cvode_integration_resources </td>
+          <td>(</td>
+          <td class="paramtype">uint64_t</td>          <td class="paramname"><span class="paramname"><em>N</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t</td>          <td class="paramname"><span class="paramname"><em>numSpecies</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>current_time</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>composition</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>absTol</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>relTol</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>accumulatedEnergy</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Allocate and initialize CVODE vectors, linear algebra, tolerances, and constraints. </p>
+<p>State vector m_Y is sized to N (numSpecies + 1). Species slots are initialized from Composition molar abundances when present, otherwise a tiny positive value; the last slot is set to accumulatedEnergy. Sets scalar tolerances, non-negativity constraints for species, maximum step size, creates a dense matrix and dense linear solver, and registers the Jacobian. </p>
+
+</div>
+</div>
+<a id="a53c14f504e5b7827b4bab4a0a7a13341" name="a53c14f504e5b7827b4bab4a0a7a13341"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a53c14f504e5b7827b4bab4a0a7a13341">&#9670;&#160;</a></span>log_step_diagnostics()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::solver::CVODESolverStrategy::log_step_diagnostics </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">CVODEUserData</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>user_data</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Compute and print per-component error ratios; run diagnostic helpers. </p>
+<p>Gathers CVODE's estimated local errors, converts the state to a Composition, and prints a sorted table of species with highest error ratios; then invokes diagnostic routines to inspect Jacobian stiffness and species balance. </p>
+
+</div>
+</div>
+<a id="af500df838024c82724eaf7fe1cb9b8e8" name="af500df838024c82724eaf7fe1cb9b8e8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af500df838024c82724eaf7fe1cb9b8e8">&#9670;&#160;</a></span>operator=() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a> &amp; gridfire::solver::CVODESolverStrategy::operator= </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a> &amp;</td>          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel delete">delete</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ad26879fafcee9ecb21cc7c5ac0db1692" name="ad26879fafcee9ecb21cc7c5ac0db1692"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad26879fafcee9ecb21cc7c5ac0db1692">&#9670;&#160;</a></span>operator=() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a> &amp; gridfire::solver::CVODESolverStrategy::operator= </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a> &amp;&amp;</td>          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel delete">delete</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a77638ef3d2279009e5a57bbd3f0eb63b" name="a77638ef3d2279009e5a57bbd3f0eb63b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a77638ef3d2279009e5a57bbd3f0eb63b">&#9670;&#160;</a></span>set_callback()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::solver::CVODESolverStrategy::set_callback </td>
+          <td>(</td>
+          <td class="paramtype">const std::any &amp;</td>          <td class="paramname"><span class="paramname"><em>callback</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Install a timestep callback. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">callback</td><td>std::any containing <a class="el" href="#a89c537c2f34ba3e202374304b7e5990a" title="Type alias for a timestep callback.">TimestepCallback</a> (std::function&lt;void(const TimestepContext&amp;)&gt;). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::bad_any_cast</td><td>If callback is not of the expected type. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a4d97ee85933d5e5f90d4194bb021a1dc">gridfire::solver::NetworkSolverStrategy&lt; DynamicEngine &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a46dacb6eb075f2aadac0e56972deeaa3" name="a46dacb6eb075f2aadac0e56972deeaa3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a46dacb6eb075f2aadac0e56972deeaa3">&#9670;&#160;</a></span>set_stdout_logging_enabled()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::solver::CVODESolverStrategy::set_stdout_logging_enabled </td>
+          <td>(</td>
+          <td class="paramtype">const bool</td>          <td class="paramname"><span class="paramname"><em>value</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Enable/disable per-step stdout logging. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a50c7b4e1ff2c88ce424c745478414e30" name="a50c7b4e1ff2c88ce424c745478414e30"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a50c7b4e1ff2c88ce424c745478414e30">&#9670;&#160;</a></span>m_callback</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="#a89c537c2f34ba3e202374304b7e5990a">TimestepCallback</a> gridfire::solver::CVODESolverStrategy::m_callback</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Optional per-step callback. </p>
+
+</div>
+</div>
+<a id="a202fe9e6499aac5f6813e036ee4ed2d5" name="a202fe9e6499aac5f6813e036ee4ed2d5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a202fe9e6499aac5f6813e036ee4ed2d5">&#9670;&#160;</a></span>m_config</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::config::Config&amp; gridfire::solver::CVODESolverStrategy::m_config = fourdst::config::Config::getInstance()</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a50d8f309ca897fa83b16db0a1701b339" name="a50d8f309ca897fa83b16db0a1701b339"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a50d8f309ca897fa83b16db0a1701b339">&#9670;&#160;</a></span>m_constraints</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">N_Vector gridfire::solver::CVODESolverStrategy::m_constraints = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>CVODE constraints vector (&gt;= 0 for species entries). </p>
+
+</div>
+</div>
+<a id="ab5a8fa55e36685cac50c1dbdd8dbfa57" name="ab5a8fa55e36685cac50c1dbdd8dbfa57"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab5a8fa55e36685cac50c1dbdd8dbfa57">&#9670;&#160;</a></span>m_cvode_mem</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void* gridfire::solver::CVODESolverStrategy::m_cvode_mem = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>CVODE memory block. </p>
+
+</div>
+</div>
+<a id="afd1053d0827512b6831ee15f14488c20" name="afd1053d0827512b6831ee15f14488c20"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afd1053d0827512b6831ee15f14488c20">&#9670;&#160;</a></span>m_J</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">SUNMatrix gridfire::solver::CVODESolverStrategy::m_J = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Dense Jacobian matrix. </p>
+
+</div>
+</div>
+<a id="a5867eb99b00815b8b4f710cb48904dbe" name="a5867eb99b00815b8b4f710cb48904dbe"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5867eb99b00815b8b4f710cb48904dbe">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::solver::CVODESolverStrategy::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="af4a2f003a4c4c06b4b72840f2d445f81" name="af4a2f003a4c4c06b4b72840f2d445f81"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af4a2f003a4c4c06b4b72840f2d445f81">&#9670;&#160;</a></span>m_LS</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">SUNLinearSolver gridfire::solver::CVODESolverStrategy::m_LS = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Dense linear solver. </p>
+
+</div>
+</div>
+<a id="ab7495898e893640670f49308a105658f" name="ab7495898e893640670f49308a105658f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab7495898e893640670f49308a105658f">&#9670;&#160;</a></span>m_num_steps</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::solver::CVODESolverStrategy::m_num_steps = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>CVODE step counter (used for diagnostics and triggers). </p>
+
+</div>
+</div>
+<a id="af3e470b5a6f982c107785c64b169a992" name="af3e470b5a6f982c107785c64b169a992"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af3e470b5a6f982c107785c64b169a992">&#9670;&#160;</a></span>m_stdout_logging_enabled</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::solver::CVODESolverStrategy::m_stdout_logging_enabled = true</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>If true, print per-step logs and use CV_ONE_STEP. </p>
+
+</div>
+</div>
+<a id="ac57a4f62d95d769c379470e680e6882d" name="ac57a4f62d95d769c379470e680e6882d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac57a4f62d95d769c379470e680e6882d">&#9670;&#160;</a></span>m_sun_ctx</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">SUNContext gridfire::solver::CVODESolverStrategy::m_sun_ctx = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>SUNDIALS context (lifetime of the solver). </p>
+
+</div>
+</div>
+<a id="aae19c1ec467051404a7bf1d4c7066c22" name="aae19c1ec467051404a7bf1d4c7066c22"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aae19c1ec467051404a7bf1d4c7066c22">&#9670;&#160;</a></span>m_Y</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">N_Vector gridfire::solver::CVODESolverStrategy::m_Y = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>CVODE state vector (species + energy accumulator). </p>
+
+</div>
+</div>
+<a id="a0717afcde6fdb71b12490bbcadb5fdb4" name="a0717afcde6fdb71b12490bbcadb5fdb4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0717afcde6fdb71b12490bbcadb5fdb4">&#9670;&#160;</a></span>m_YErr</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">N_Vector gridfire::solver::CVODESolverStrategy::m_YErr = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Estimated local errors. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/solver/strategies/<a class="el" href="_c_v_o_d_e__solver__strategy_8h.html">CVODE_solver_strategy.h</a></li>
+<li>src/lib/solver/strategies/<a class="el" href="_c_v_o_d_e__solver__strategy_8cpp.html">CVODE_solver_strategy.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1solver.html">solver</a></li><li class="navelem"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.js b/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.js
new file mode 100644
index 00000000..2d050c92
--- /dev/null
+++ b/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.js
@@ -0,0 +1,35 @@
+var classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy =
+[
+    [ "CVODEUserData", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data" ],
+    [ "TimestepContext", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context" ],
+    [ "TimestepCallback", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a89c537c2f34ba3e202374304b7e5990a", null ],
+    [ "CVODESolverStrategy", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a924a541da3b205818f90b50d675631c0", null ],
+    [ "~CVODESolverStrategy", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aca2d01a907c3bb828f9f99ad05506578", null ],
+    [ "CVODESolverStrategy", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a2fa56a2e7a63d31d2afa895a5e4fe827", null ],
+    [ "CVODESolverStrategy", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a1f007d68e808ba61f8425d0487432c0d", null ],
+    [ "calculate_rhs", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a38e0f02ba54e217e9638260d9651b1c3", null ],
+    [ "cleanup_cvode_resources", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a7f6786780137de1a136e081c537a9667", null ],
+    [ "cvode_jac_wrapper", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ae13fc9c21f595edbee1c9b7debaa61b3", null ],
+    [ "cvode_rhs_wrapper", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a14c620ef75749c8ef3dfdb84132e5620", null ],
+    [ "describe_callback_context", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5dfb7a2ce0008d41dee4aa596a4e1ce4", null ],
+    [ "evaluate", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab8224d205ea3a28d9c723631c2f00b53", null ],
+    [ "get_stdout_logging_enabled", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a87b7b39e2a15cc30b118c8e6fda9a1a6", null ],
+    [ "initialize_cvode_integration_resources", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afc6c55237df4af240c4c842305085d91", null ],
+    [ "log_step_diagnostics", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a53c14f504e5b7827b4bab4a0a7a13341", null ],
+    [ "operator=", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af500df838024c82724eaf7fe1cb9b8e8", null ],
+    [ "operator=", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ad26879fafcee9ecb21cc7c5ac0db1692", null ],
+    [ "set_callback", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a77638ef3d2279009e5a57bbd3f0eb63b", null ],
+    [ "set_stdout_logging_enabled", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a46dacb6eb075f2aadac0e56972deeaa3", null ],
+    [ "m_callback", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50c7b4e1ff2c88ce424c745478414e30", null ],
+    [ "m_config", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a202fe9e6499aac5f6813e036ee4ed2d5", null ],
+    [ "m_constraints", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50d8f309ca897fa83b16db0a1701b339", null ],
+    [ "m_cvode_mem", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab5a8fa55e36685cac50c1dbdd8dbfa57", null ],
+    [ "m_J", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afd1053d0827512b6831ee15f14488c20", null ],
+    [ "m_logger", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5867eb99b00815b8b4f710cb48904dbe", null ],
+    [ "m_LS", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af4a2f003a4c4c06b4b72840f2d445f81", null ],
+    [ "m_num_steps", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab7495898e893640670f49308a105658f", null ],
+    [ "m_stdout_logging_enabled", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af3e470b5a6f982c107785c64b169a992", null ],
+    [ "m_sun_ctx", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ac57a4f62d95d769c379470e680e6882d", null ],
+    [ "m_Y", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aae19c1ec467051404a7bf1d4c7066c22", null ],
+    [ "m_YErr", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a0717afcde6fdb71b12490bbcadb5fdb4", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.png b/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.png
new file mode 100644
index 0000000000000000000000000000000000000000..fb17efa864b8403be798d7223939080d92a6d0d6
GIT binary patch
literal 1239
zcmeAS@N?(olHy`uVBq!ia0y~yU<?DY12~w0WNG|b2_PjM;1lBd|Nnm=^TnI5rTvGN
zTNr2-NK8NT;=zLlKylNvVM~B=oFzei!3;n?7??B7zQVx3lH}>)7*fIbcJAw<*9IId
z;jd?&+xK61{*`Si6V`iXsM|WfF0FCosCD}we%Zu#W#+799*IgPMLdsbZk&{|LrB}R
zO&i9@7SDcZzx0arB%2E}kA7MgEpzjlrF{MLzVO8l-<HlfeL}iS?ap1n>3ZijeKq{y
zw?aJP`SkLQ_l(xLtxwpS{i7#%lFXHj>neZN=4D#dulQB6Q@Y^lmX$X*-})l6KJI$B
z+QnVROZ~iGohkIsk&dvxx>Y8vr2hL}7wfxePMdk&-|Sa;+1FOumw9xnTpph=C-?7-
zJ2!nRy<4ZqyL$V&#O=R|pWKj?bxCZ_XD-|DtI&A$**#aAKfiJR6=@T;y3o|^@VvY6
ze*--I_Io|Q+O)eUr}vME`}{{5(YflHOKfv;?^fKi+F)$kd{y*);@7n$J$H{x6PSIt
zJ!1Ri_g34yU(Iu8E9HNeD0|&atp3KWs*chZ8L!VyzPao2#XqmMuf1|@O&oiT<mboh
zW%%6=N15A|Z@wzJc=6m4cI}gOZ_-}x_^a1-;KA;>+iqHgIEWSbAG^Hraq${8ci-~j
zi#%(;EXwV9`fdZqo2%EhM%?zboMv)=?%&1tWOQ1^rf04_{7!bpRol{MJETIxKkr^@
zy!~R?3h(9H(*K_6W<Ops_wd!JzTT^iCv9;*zDu0d^IzcG<hxTMC)EU%v*l%Jd;Tkx
zEp7h3^4`*v?gRfPuUXbI;YnXy>}y}IbsQ5?x>W9mCaIn*Pz{^J6AoisXMSzs8=N(3
znPvdPhwv|~44MobAxW$a8MU>l;S3yMAg1jKwQz=xP#{x2z=^d1XaEC8IFLsV#$VMn
zOQ%fIS~|sJp+}I{q(@UCR5fEdLnj@Y3S)?Nm6m?}8|<}r@)G8`(KY5*(oE)GSO1*9
zKVn(5+?-#feEDpOp87A;H+_Bhao*+N)vdFSM$P9D|8{U@{QD1=VJUREYwfN(lAl!z
ze@R_0iN5y2!*WrrzR4x&$Hx0h{|H6*uAcuYsLUv8(!5KzBc3k^i+TMp?CQGil>W0*
zx0YL$GQa+{@!Vgl#mx#iZzg?NrL-Zc_q1f$>id^|e><O&y?T@O4(|QePFURTkDU~E
zH9w*BZ%Ra+wrsL>q3nrk=kDg1et%x4yX|T0U#rLN6PHZ?>V30n=byVWdwZ{zEq31D
zd~sS*{SU#2<A2KoS^j*gjV?EcJu9KRJ^t~j_m<b>e!C~c-d>)|m+brb?M?fvCt1hM
zVxrz=e2F@~O}un-{Li&+UpJqBFZbVD)WExPeip;E2?i=JmA`04DF0ffQrplst5L;v
zWrxy-`zot76(@aZbLwhPSt_(z<?jk0(W<@CD`*FZ@w##Al%SxcQ-oI3$0o@ie{Sgj
REV>vNJYD@<);T3K0RT07Q2_t|

literal 0
HcmV?d00001

diff --git a/docs/html/classgridfire_1_1solver_1_1_network_solver_strategy.html b/docs/html/classgridfire_1_1solver_1_1_network_solver_strategy.html
index 343b710f..f337755e 100644
--- a/docs/html/classgridfire_1_1solver_1_1_network_solver_strategy.html
+++ b/docs/html/classgridfire_1_1solver_1_1_network_solver_strategy.html
@@ -232,7 +232,7 @@ template&lt;typename EngineT&gt; </div>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -241,7 +241,7 @@ template&lt;typename EngineT&gt; </div>
 <dl class="section return"><dt>Returns</dt><dd>A vector of tuples, each containing a string for the parameter's name and a string for its type.</dd></dl>
 <p>This method should be overridden by derived classes to provide a description of the context that will be passed to the callback function. The intent of this method is that an end user can investigate the context that will be passed to the callback function, and use this information to craft their own callback function. </p>
 
-<p>Implemented in <a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a053c9c1343af8f30ced69707e1d899e3">gridfire::solver::DirectNetworkSolver</a>, and <a class="el" href="class_py_dynamic_network_solver_strategy.html#a147a0a543268427a5930143902217ac3">PyDynamicNetworkSolverStrategy</a>.</p>
+<p>Implemented in <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5dfb7a2ce0008d41dee4aa596a4e1ce4">gridfire::solver::CVODESolverStrategy</a>, and <a class="el" href="class_py_dynamic_network_solver_strategy.html#a147a0a543268427a5930143902217ac3">PyDynamicNetworkSolverStrategy</a>.</p>
 
 </div>
 </div>
@@ -279,7 +279,7 @@ template&lt;typename EngineT&gt; </div>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>The output conditions after the timestep. </dd></dl>
 
-<p>Implemented in <a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a">gridfire::solver::DirectNetworkSolver</a>, and <a class="el" href="class_py_dynamic_network_solver_strategy.html#a2095abb83ed6229ebb27b4883cec51c4">PyDynamicNetworkSolverStrategy</a>.</p>
+<p>Implemented in <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab8224d205ea3a28d9c723631c2f00b53">gridfire::solver::CVODESolverStrategy</a>, and <a class="el" href="class_py_dynamic_network_solver_strategy.html#a2095abb83ed6229ebb27b4883cec51c4">PyDynamicNetworkSolverStrategy</a>.</p>
 
 </div>
 </div>
@@ -317,7 +317,7 @@ template&lt;typename EngineT&gt; </div>
   </dd>
 </dl>
 
-<p>Implemented in <a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a6bb0738eef5669b3ad83a3c65a0d1e96">gridfire::solver::DirectNetworkSolver</a>, and <a class="el" href="class_py_dynamic_network_solver_strategy.html#a112a7babc03858a69d6994a7155370d3">PyDynamicNetworkSolverStrategy</a>.</p>
+<p>Implemented in <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a77638ef3d2279009e5a57bbd3f0eb63b">gridfire::solver::CVODESolverStrategy</a>, and <a class="el" href="class_py_dynamic_network_solver_strategy.html#a112a7babc03858a69d6994a7155370d3">PyDynamicNetworkSolverStrategy</a>.</p>
 
 </div>
 </div>
diff --git a/docs/html/classgridfire_1_1trigger_1_1_and_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1_and_trigger-members.html
new file mode 100644
index 00000000..71c7a2fd
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1_and_trigger-members.html
@@ -0,0 +1,134 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1_and_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt; Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a969738baf0bda97664715937d4bc403e">AndTrigger</a>(std::unique_ptr&lt; Trigger&lt; TriggerContextStruct &gt; &gt; A, std::unique_ptr&lt; Trigger&lt; TriggerContextStruct &gt; &gt; B)</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#aaefdfa86856f9f7839b6a7fdffa4a579">check</a>(const TriggerContextStruct &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a2dcd635c6bdbcfe517adca6e2bd5c408">describe</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a99be74b126d50c15d21c0724d933af87">m_A</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#af8ee88421d0dfd92de6df96d686ece38">m_B</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a43e6a9c01b163ab92a0b413bfba52ef5">m_hits</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a1714656e907edfcba2d354ff5d7c9ceb">m_misses</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#ae3ff88ddb15d04e798fc03c6c941e312">m_resets</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a7f88c1139e1b05baed44614104d601b4">m_updates</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#ab78539e5cd88194ab9e98434793eae3f">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#addfd61f8cb234881f535fb8f4d618d74">numMisses</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#afffb4281569963183d7db3ed1568eb3a">numTriggers</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a2436d8643911ade907e03fb29531ceaa">reset</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a62f7dbbcf0554caa68e3d778580b3c1d">update</a>(const TriggerContextStruct &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a01033721e8f5d90483d65c904399cf96">why</a>(const TriggerContextStruct &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a2ee18348ca65cc1aa56eb41292a39bc5">~AndTrigger</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1_and_trigger.html b/docs/html/classgridfire_1_1trigger_1_1_and_trigger.html
new file mode 100644
index 00000000..fce467f9
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1_and_trigger.html
@@ -0,0 +1,645 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt; Class Template Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1_and_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1trigger_1_1_and_trigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt; Class Template Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Logical conjunction of two triggers with short-circuit evaluation.  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;trigger_logical.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="classgridfire_1_1trigger_1_1_and_trigger.png" usemap="#gridfire::trigger::AndTrigger_3C_20TriggerContextStruct_20_3E_map" alt=""/>
+  <map id="gridfire::trigger::AndTrigger_3C_20TriggerContextStruct_20_3E_map" name="gridfire::trigger::AndTrigger_3C_20TriggerContextStruct_20_3E_map">
+<area href="classgridfire_1_1trigger_1_1_logical_trigger.html" alt="gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt;" shape="rect" coords="0,56,324,80"/>
+<area href="classgridfire_1_1trigger_1_1_trigger.html" title="Generic trigger interface for signaling events/conditions during integration." alt="gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;" shape="rect" coords="0,0,324,24"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a969738baf0bda97664715937d4bc403e" id="r_a969738baf0bda97664715937d4bc403e"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a969738baf0bda97664715937d4bc403e">AndTrigger</a> (std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt; A, std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt; B)</td></tr>
+<tr class="memdesc:a969738baf0bda97664715937d4bc403e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct AND from two triggers (ownership transferred).  <br /></td></tr>
+<tr class="separator:a969738baf0bda97664715937d4bc403e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2ee18348ca65cc1aa56eb41292a39bc5" id="r_a2ee18348ca65cc1aa56eb41292a39bc5"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2ee18348ca65cc1aa56eb41292a39bc5">~AndTrigger</a> () override=default</td></tr>
+<tr class="separator:a2ee18348ca65cc1aa56eb41292a39bc5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aaefdfa86856f9f7839b6a7fdffa4a579" id="r_aaefdfa86856f9f7839b6a7fdffa4a579"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aaefdfa86856f9f7839b6a7fdffa4a579">check</a> (const TriggerContextStruct &amp;ctx) const override</td></tr>
+<tr class="memdesc:aaefdfa86856f9f7839b6a7fdffa4a579"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate A &amp;&amp; B; increments hit/miss counters.  <br /></td></tr>
+<tr class="separator:aaefdfa86856f9f7839b6a7fdffa4a579"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a62f7dbbcf0554caa68e3d778580b3c1d" id="r_a62f7dbbcf0554caa68e3d778580b3c1d"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a62f7dbbcf0554caa68e3d778580b3c1d">update</a> (const TriggerContextStruct &amp;ctx) override</td></tr>
+<tr class="memdesc:a62f7dbbcf0554caa68e3d778580b3c1d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update both sub-triggers and increment update counter.  <br /></td></tr>
+<tr class="separator:a62f7dbbcf0554caa68e3d778580b3c1d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2436d8643911ade907e03fb29531ceaa" id="r_a2436d8643911ade907e03fb29531ceaa"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2436d8643911ade907e03fb29531ceaa">reset</a> () override</td></tr>
+<tr class="memdesc:a2436d8643911ade907e03fb29531ceaa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset both sub-triggers and local counters.  <br /></td></tr>
+<tr class="separator:a2436d8643911ade907e03fb29531ceaa"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab78539e5cd88194ab9e98434793eae3f" id="r_ab78539e5cd88194ab9e98434793eae3f"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab78539e5cd88194ab9e98434793eae3f">name</a> () const override</td></tr>
+<tr class="memdesc:ab78539e5cd88194ab9e98434793eae3f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable name.  <br /></td></tr>
+<tr class="separator:ab78539e5cd88194ab9e98434793eae3f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a01033721e8f5d90483d65c904399cf96" id="r_a01033721e8f5d90483d65c904399cf96"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a01033721e8f5d90483d65c904399cf96">why</a> (const TriggerContextStruct &amp;ctx) const override</td></tr>
+<tr class="memdesc:a01033721e8f5d90483d65c904399cf96"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structured explanation; short-circuits on A=false.  <br /></td></tr>
+<tr class="separator:a01033721e8f5d90483d65c904399cf96"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2dcd635c6bdbcfe517adca6e2bd5c408" id="r_a2dcd635c6bdbcfe517adca6e2bd5c408"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2dcd635c6bdbcfe517adca6e2bd5c408">describe</a> () const override</td></tr>
+<tr class="memdesc:a2dcd635c6bdbcfe517adca6e2bd5c408"><td class="mdescLeft">&#160;</td><td class="mdescRight">Description expression e.g. "(A) AND (B)".  <br /></td></tr>
+<tr class="separator:a2dcd635c6bdbcfe517adca6e2bd5c408"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afffb4281569963183d7db3ed1568eb3a" id="r_afffb4281569963183d7db3ed1568eb3a"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afffb4281569963183d7db3ed1568eb3a">numTriggers</a> () const override</td></tr>
+<tr class="memdesc:afffb4281569963183d7db3ed1568eb3a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of true evaluations since last reset.  <br /></td></tr>
+<tr class="separator:afffb4281569963183d7db3ed1568eb3a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:addfd61f8cb234881f535fb8f4d618d74" id="r_addfd61f8cb234881f535fb8f4d618d74"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#addfd61f8cb234881f535fb8f4d618d74">numMisses</a> () const override</td></tr>
+<tr class="memdesc:addfd61f8cb234881f535fb8f4d618d74"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of false evaluations since last reset.  <br /></td></tr>
+<tr class="separator:addfd61f8cb234881f535fb8f4d618d74"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1trigger_1_1_trigger"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1trigger_1_1_trigger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a99be74b126d50c15d21c0724d933af87" id="r_a99be74b126d50c15d21c0724d933af87"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a99be74b126d50c15d21c0724d933af87">m_A</a></td></tr>
+<tr class="separator:a99be74b126d50c15d21c0724d933af87"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af8ee88421d0dfd92de6df96d686ece38" id="r_af8ee88421d0dfd92de6df96d686ece38"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af8ee88421d0dfd92de6df96d686ece38">m_B</a></td></tr>
+<tr class="separator:af8ee88421d0dfd92de6df96d686ece38"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a43e6a9c01b163ab92a0b413bfba52ef5" id="r_a43e6a9c01b163ab92a0b413bfba52ef5"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a43e6a9c01b163ab92a0b413bfba52ef5">m_hits</a> = 0</td></tr>
+<tr class="separator:a43e6a9c01b163ab92a0b413bfba52ef5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1714656e907edfcba2d354ff5d7c9ceb" id="r_a1714656e907edfcba2d354ff5d7c9ceb"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1714656e907edfcba2d354ff5d7c9ceb">m_misses</a> = 0</td></tr>
+<tr class="separator:a1714656e907edfcba2d354ff5d7c9ceb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7f88c1139e1b05baed44614104d601b4" id="r_a7f88c1139e1b05baed44614104d601b4"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7f88c1139e1b05baed44614104d601b4">m_updates</a> = 0</td></tr>
+<tr class="separator:a7f88c1139e1b05baed44614104d601b4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae3ff88ddb15d04e798fc03c6c941e312" id="r_ae3ff88ddb15d04e798fc03c6c941e312"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae3ff88ddb15d04e798fc03c6c941e312">m_resets</a> = 0</td></tr>
+<tr class="separator:ae3ff88ddb15d04e798fc03c6c941e312"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><div class="compoundTemplParams">template&lt;typename TriggerContextStruct&gt;<br />
+class gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</div><p>Logical conjunction of two triggers with short-circuit evaluation. </p>
+<p>check(ctx) returns A.check(ctx) &amp;&amp; B.check(ctx). The why(ctx) explanation short-circuits if A is false, avoiding evaluation of B. update(ctx) calls <a class="el" href="#a62f7dbbcf0554caa68e3d778580b3c1d" title="Update both sub-triggers and increment update counter.">update()</a> on both A and B.</p>
+<p>Counters (mutable) are incremented inside const <a class="el" href="#aaefdfa86856f9f7839b6a7fdffa4a579" title="Evaluate A &amp;&amp; B; increments hit/miss counters.">check()</a>: m_hits on true; m_misses on false; m_updates on each <a class="el" href="#a62f7dbbcf0554caa68e3d778580b3c1d" title="Update both sub-triggers and increment update counter.">update()</a>; m_resets on <a class="el" href="#a2436d8643911ade907e03fb29531ceaa" title="Reset both sub-triggers and local counters.">reset()</a>.</p>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">auto</span> t = <a class="code hl_function" href="#a969738baf0bda97664715937d4bc403e">AndTrigger</a>(ctxA, ctxB);</div>
+<div class="line"><span class="keywordflow">if</span> (t.check(ctx)) { (void)ctx; }</div>
+<div class="ttc" id="aclassgridfire_1_1trigger_1_1_and_trigger_html_a969738baf0bda97664715937d4bc403e"><div class="ttname"><a href="#a969738baf0bda97664715937d4bc403e">gridfire::trigger::AndTrigger::AndTrigger</a></div><div class="ttdeci">AndTrigger(std::unique_ptr&lt; Trigger&lt; TriggerContextStruct &gt; &gt; A, std::unique_ptr&lt; Trigger&lt; TriggerContextStruct &gt; &gt; B)</div><div class="ttdoc">Construct AND from two triggers (ownership transferred).</div><div class="ttdef"><b>Definition</b> trigger_logical.h:196</div></div>
+</div><!-- fragment --> </dd></dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a969738baf0bda97664715937d4bc403e" name="a969738baf0bda97664715937d4bc403e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a969738baf0bda97664715937d4bc403e">&#9670;&#160;</a></span>AndTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::AndTrigger </td>
+          <td>(</td>
+          <td class="paramtype">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;</td>          <td class="paramname"><span class="paramname"><em>A</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;</td>          <td class="paramname"><span class="paramname"><em>B</em></span>&#160;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Construct AND from two triggers (ownership transferred). </p>
+
+</div>
+</div>
+<a id="a2ee18348ca65cc1aa56eb41292a39bc5" name="a2ee18348ca65cc1aa56eb41292a39bc5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2ee18348ca65cc1aa56eb41292a39bc5">&#9670;&#160;</a></span>~AndTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::~<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">AndTrigger</a> </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel default">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="aaefdfa86856f9f7839b6a7fdffa4a579" name="aaefdfa86856f9f7839b6a7fdffa4a579"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaefdfa86856f9f7839b6a7fdffa4a579">&#9670;&#160;</a></span>check()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::check </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate A &amp;&amp; B; increments hit/miss counters. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a2dcd635c6bdbcfe517adca6e2bd5c408" name="a2dcd635c6bdbcfe517adca6e2bd5c408"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2dcd635c6bdbcfe517adca6e2bd5c408">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::describe </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Description expression e.g. "(A) AND (B)". </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ab78539e5cd88194ab9e98434793eae3f" name="ab78539e5cd88194ab9e98434793eae3f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab78539e5cd88194ab9e98434793eae3f">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::name </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Human-readable name. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="addfd61f8cb234881f535fb8f4d618d74" name="addfd61f8cb234881f535fb8f4d618d74"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#addfd61f8cb234881f535fb8f4d618d74">&#9670;&#160;</a></span>numMisses()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::numMisses </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of false evaluations since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="afffb4281569963183d7db3ed1568eb3a" name="afffb4281569963183d7db3ed1568eb3a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afffb4281569963183d7db3ed1568eb3a">&#9670;&#160;</a></span>numTriggers()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::numTriggers </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of true evaluations since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a2436d8643911ade907e03fb29531ceaa" name="a2436d8643911ade907e03fb29531ceaa"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2436d8643911ade907e03fb29531ceaa">&#9670;&#160;</a></span>reset()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::reset </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reset both sub-triggers and local counters. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a62f7dbbcf0554caa68e3d778580b3c1d" name="a62f7dbbcf0554caa68e3d778580b3c1d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a62f7dbbcf0554caa68e3d778580b3c1d">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::update </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Update both sub-triggers and increment update counter. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a01033721e8f5d90483d65c904399cf96" name="a01033721e8f5d90483d65c904399cf96"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a01033721e8f5d90483d65c904399cf96">&#9670;&#160;</a></span>why()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::why </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Structured explanation; short-circuits on A=false. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a99be74b126d50c15d21c0724d933af87" name="a99be74b126d50c15d21c0724d933af87"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a99be74b126d50c15d21c0724d933af87">&#9670;&#160;</a></span>m_A</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt;<a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt;TriggerContextStruct&gt; &gt; <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::m_A</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="af8ee88421d0dfd92de6df96d686ece38" name="af8ee88421d0dfd92de6df96d686ece38"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af8ee88421d0dfd92de6df96d686ece38">&#9670;&#160;</a></span>m_B</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt;<a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt;TriggerContextStruct&gt; &gt; <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::m_B</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a43e6a9c01b163ab92a0b413bfba52ef5" name="a43e6a9c01b163ab92a0b413bfba52ef5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a43e6a9c01b163ab92a0b413bfba52ef5">&#9670;&#160;</a></span>m_hits</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::m_hits = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a1714656e907edfcba2d354ff5d7c9ceb" name="a1714656e907edfcba2d354ff5d7c9ceb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1714656e907edfcba2d354ff5d7c9ceb">&#9670;&#160;</a></span>m_misses</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::m_misses = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae3ff88ddb15d04e798fc03c6c941e312" name="ae3ff88ddb15d04e798fc03c6c941e312"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae3ff88ddb15d04e798fc03c6c941e312">&#9670;&#160;</a></span>m_resets</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::m_resets = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a7f88c1139e1b05baed44614104d601b4" name="a7f88c1139e1b05baed44614104d601b4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7f88c1139e1b05baed44614104d601b4">&#9670;&#160;</a></span>m_updates</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::m_updates = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/trigger/<a class="el" href="trigger__logical_8h.html">trigger_logical.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li><li class="navelem"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">AndTrigger</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1_and_trigger.js b/docs/html/classgridfire_1_1trigger_1_1_and_trigger.js
new file mode 100644
index 00000000..ce645271
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1_and_trigger.js
@@ -0,0 +1,19 @@
+var classgridfire_1_1trigger_1_1_and_trigger =
+[
+    [ "AndTrigger", "classgridfire_1_1trigger_1_1_and_trigger.html#a969738baf0bda97664715937d4bc403e", null ],
+    [ "~AndTrigger", "classgridfire_1_1trigger_1_1_and_trigger.html#a2ee18348ca65cc1aa56eb41292a39bc5", null ],
+    [ "check", "classgridfire_1_1trigger_1_1_and_trigger.html#aaefdfa86856f9f7839b6a7fdffa4a579", null ],
+    [ "describe", "classgridfire_1_1trigger_1_1_and_trigger.html#a2dcd635c6bdbcfe517adca6e2bd5c408", null ],
+    [ "name", "classgridfire_1_1trigger_1_1_and_trigger.html#ab78539e5cd88194ab9e98434793eae3f", null ],
+    [ "numMisses", "classgridfire_1_1trigger_1_1_and_trigger.html#addfd61f8cb234881f535fb8f4d618d74", null ],
+    [ "numTriggers", "classgridfire_1_1trigger_1_1_and_trigger.html#afffb4281569963183d7db3ed1568eb3a", null ],
+    [ "reset", "classgridfire_1_1trigger_1_1_and_trigger.html#a2436d8643911ade907e03fb29531ceaa", null ],
+    [ "update", "classgridfire_1_1trigger_1_1_and_trigger.html#a62f7dbbcf0554caa68e3d778580b3c1d", null ],
+    [ "why", "classgridfire_1_1trigger_1_1_and_trigger.html#a01033721e8f5d90483d65c904399cf96", null ],
+    [ "m_A", "classgridfire_1_1trigger_1_1_and_trigger.html#a99be74b126d50c15d21c0724d933af87", null ],
+    [ "m_B", "classgridfire_1_1trigger_1_1_and_trigger.html#af8ee88421d0dfd92de6df96d686ece38", null ],
+    [ "m_hits", "classgridfire_1_1trigger_1_1_and_trigger.html#a43e6a9c01b163ab92a0b413bfba52ef5", null ],
+    [ "m_misses", "classgridfire_1_1trigger_1_1_and_trigger.html#a1714656e907edfcba2d354ff5d7c9ceb", null ],
+    [ "m_resets", "classgridfire_1_1trigger_1_1_and_trigger.html#ae3ff88ddb15d04e798fc03c6c941e312", null ],
+    [ "m_updates", "classgridfire_1_1trigger_1_1_and_trigger.html#a7f88c1139e1b05baed44614104d601b4", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1trigger_1_1_and_trigger.png b/docs/html/classgridfire_1_1trigger_1_1_and_trigger.png
new file mode 100644
index 0000000000000000000000000000000000000000..095065457abc709346becb2c94ac9fbbca29cf1e
GIT binary patch
literal 1791
zcmcK5dpwhS90%~nrNk*`)Q(b0nrcJ0xsKejqi3BnVF;tnXrffZPz$S5&Mck1np-1u
z!I~tD=D1dLk<kfj80p}+tkGdct~*b?s@Hj)f6wdu{`g(K-#?z`_4>V^&y#cz@48A$
zUkd<$Rp5RX4**bcf%c3QYS4Tql*EFT^#^|-V3kTGv>lNtsI13a>s`pxYcqr+Z{NO!
z>J}~Dc~DO?$^-8SK<7`xN;Rtk0G2aB7bilj%2>9fm|vrf)j+qg`;<vBJ~o4nboKjY
zarJ{tU#$v*kVeW$5Sf1vhpg2D+0N`KZxwg;bu9*akl>h#;Hut2*jTKjGzpG&<s#tX
zrLuW$-Z`^(Asy%5AlFAvn&etF#8<u&l1(O7&+M5Rxh8+g#~-dvp=k7<{Ghy8De8GY
z<9?wpU(#3X_DpJ3@Fcw1l3TH)Z<!l``o2pl%ko>oFsb+7p%epHZl>{Qo<F0{@pz^r
z;wWA8egKmdZO6o%F@Gu0<kl3Q(Zw>u>w0HX6|?GcO%iX;n`co!eeANdsV4K`jdo2^
z(hk1K>pSRnR39xlka1L_KCv^jFUGFyOv=Kwc7w*=LUY@lPQz1G4IebpI??r=-wj~X
zSik7uXVN;yM|2o<I8z_NnEj08H}U<GvBa!gTK{d&hJxPK*-okB3BTLb+lJa_M-ap5
zRHw>>h#c+oZIR#;3t4##C+xBnSH46vaP=y2u*sfBU(M5@>R(0#gtqnkfdCT<Z{}<V
zBg4A6h~CeYV(!?2Wo?)(*jBr>#Q@Kq5})m9Wv^l99be`GMxYFFY|k&Z(4j%XAuoC0
zMk|0N$|7(Pcw=Iy`e91GdW{NEivifjtzC`<SgJ;J|MReiJo<{a1V{DLC_`0iI7|h)
zMgYIe1>iz$PZgd2+ExOMsUBMSscp2Y2qXeL1&0|o@#xz@=n<b^I)HJY&a8O}!K<9k
z=yfoLi|-{&kbE5)C_dGi+!L`W&oQI-e{vuWj|CXV3wO5bXAhQ)io=Yg=TM6}7+6e$
z9!!uqzi5y9tJ-K@q8L5Y@wB`$94voQr7V4lI=rE|E>rvIy%5DnYVWj4edP1QuBGGD
zfR>5aSG*y${uw28DxAIUh+@97wZMQ?bK??C=T_C2T~7ay<f7*ex}C)GDv8val%enq
zKIm-f)rYDW5^o&VmIU{7?b}DW8@4tI<5Z+;(+NM`;pE|VLTRH`dO|3MxdqH>_Dla-
zvHMxLWye1ub?@O6HO|4R{T9fN#y3YlkO%c}aHjk?Twd%(dgr~yh*#YO5%t-$@Dcs~
zAh!(++ISKRzbY%*b~xy+T50GNpS`<tTU~#)j=A;C<3+WJ8vkOq;UI01YQU2;0<i&4
zvn_lO8;N=UQbZvvtG3Oa*Tl6kFpJLY9p?6}L?SB%Q7htY!?j({oJN9H`kO*_6h8ym
zb|`^d;(j;42o!uNZ76)eM_fXL;=h>s`eiH5U-Q7-O!YWxMo%C*0GsJEA4x4PsAGW)
z$c)>jL?@kxw;@#ChW{6;&tjzx0L3@mxZJdPGSHMv-i+o8v>0SEL<^0ELWslhRCy&7
z@@Nc6LjA`q5*9(kf{s(l=3D|C(C+d4buljzt&)m77xbqadP(}cMpje4h_E?VuYZ0a
z482lbcgPNHQXI$3@XY=iOBUT9V`<OFSUO<BDp_2*;*(syZlx;{B1TwQC+e~qSfH+X
z7bq4b|EiZAR(Jk`;*h-SwXs@J{3dZ%`2fW(NA~STH}}c#$H<*AIsR$xd#{X}H_yo)
z$-ep$+>CVJi{)+IH4=5<(5+?}(?S~T`{O|J1iZ1#>+n9inbAqn_C{G7!eJ;%gCan+
zv>y1~rq(a{lu2nwyt{HZ)Xke@zi}(7R5(_pD>2xsN-5FJir{q%7o*253Tzo(5UhxQ
z!5a7ktJ!*{0D`rpEO3q=*D`=%a^T{U_BZFG-X6KF^O4jIUXO<G!|^Z3<So)D7@7~(
zGAFI}WpP@hRogN-Exd3lnJhmG|MOI$C7O17JUTwhwc?ae7&z*cTEDJaD7!Q#=@Oa-
zlP&Y;$H+qjM{{%}$}p2-1BbN;ug^IW(~oMJHJ8=ARs!!j_ZO&7tdc>$DgeadU5cHL
GT=*N_dt6EY

literal 0
HcmV?d00001

diff --git a/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger-members.html
new file mode 100644
index 00000000..38550b26
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger-members.html
@@ -0,0 +1,135 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1_every_nth_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt; Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69fbb099f8d13d39602f58fa8aa8e7f2">check</a>(const TriggerContextStruct &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#aab88715f3c94437ca7f3fcb1698c69de">describe</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69e5a3061926e1cd36fbd0a5285fa0a7">EveryNthTrigger</a>(std::unique_ptr&lt; Trigger&lt; TriggerContextStruct &gt; &gt; A, size_t N)</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a27f1fd8c8a93576f83a4f3320469c83a">m_A</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a80d6f82095c3b5fdbc46776e183cdb1f">m_counter</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a021c30d6db015bb88a70af348a5dd336">m_hits</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0a5c2c5aedc779c1535d3839c6a6596e">m_misses</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a652ba8d1ac36b9713f426eedf2b1ead0">m_N</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a87b6e54f3a0536d20709d7e746ec575d">m_resets</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#ab0a33f49be02d34b27f75edf75dbc06d">m_updates</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a4a834d24286f9204995bf78fb69f35dc">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae7776f4a526db3245e64a74a3b0172d3">numMisses</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a7e5568c9d7799b7f80ad0d3efe2cd143">numTriggers</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#abf218d255bde157540b51cd6a54f6eb1">reset</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0dd783afab7ef6005f0241f9de7b31f6">update</a>(const TriggerContextStruct &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a3bf0d69122f801deca4b62db47262d9b">why</a>(const TriggerContextStruct &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae28e54330d575d9d1d3d8ebc6e7a6f75">~EveryNthTrigger</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.html b/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.html
new file mode 100644
index 00000000..29112ca8
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.html
@@ -0,0 +1,697 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt; Class Template Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1_every_nth_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt; Class Template Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Pass-through trigger that fires every Nth time its child trigger is true.  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;trigger_logical.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="classgridfire_1_1trigger_1_1_every_nth_trigger.png" usemap="#gridfire::trigger::EveryNthTrigger_3C_20TriggerContextStruct_20_3E_map" alt=""/>
+  <map id="gridfire::trigger::EveryNthTrigger_3C_20TriggerContextStruct_20_3E_map" name="gridfire::trigger::EveryNthTrigger_3C_20TriggerContextStruct_20_3E_map">
+<area href="classgridfire_1_1trigger_1_1_logical_trigger.html" alt="gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt;" shape="rect" coords="0,56,336,80"/>
+<area href="classgridfire_1_1trigger_1_1_trigger.html" title="Generic trigger interface for signaling events/conditions during integration." alt="gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;" shape="rect" coords="0,0,336,24"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a69e5a3061926e1cd36fbd0a5285fa0a7" id="r_a69e5a3061926e1cd36fbd0a5285fa0a7"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a69e5a3061926e1cd36fbd0a5285fa0a7">EveryNthTrigger</a> (std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt; A, size_t N)</td></tr>
+<tr class="separator:a69e5a3061926e1cd36fbd0a5285fa0a7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae28e54330d575d9d1d3d8ebc6e7a6f75" id="r_ae28e54330d575d9d1d3d8ebc6e7a6f75"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae28e54330d575d9d1d3d8ebc6e7a6f75">~EveryNthTrigger</a> () override=default</td></tr>
+<tr class="separator:ae28e54330d575d9d1d3d8ebc6e7a6f75"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a69fbb099f8d13d39602f58fa8aa8e7f2" id="r_a69fbb099f8d13d39602f58fa8aa8e7f2"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a69fbb099f8d13d39602f58fa8aa8e7f2">check</a> (const TriggerContextStruct &amp;ctx) const override</td></tr>
+<tr class="memdesc:a69fbb099f8d13d39602f58fa8aa8e7f2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the trigger condition against the provided context.  <br /></td></tr>
+<tr class="separator:a69fbb099f8d13d39602f58fa8aa8e7f2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0dd783afab7ef6005f0241f9de7b31f6" id="r_a0dd783afab7ef6005f0241f9de7b31f6"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0dd783afab7ef6005f0241f9de7b31f6">update</a> (const TriggerContextStruct &amp;ctx) override</td></tr>
+<tr class="memdesc:a0dd783afab7ef6005f0241f9de7b31f6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update any internal state with the given context (e.g., counters, windows).  <br /></td></tr>
+<tr class="separator:a0dd783afab7ef6005f0241f9de7b31f6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abf218d255bde157540b51cd6a54f6eb1" id="r_abf218d255bde157540b51cd6a54f6eb1"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abf218d255bde157540b51cd6a54f6eb1">reset</a> () override</td></tr>
+<tr class="memdesc:abf218d255bde157540b51cd6a54f6eb1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset internal state and diagnostics counters.  <br /></td></tr>
+<tr class="separator:abf218d255bde157540b51cd6a54f6eb1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4a834d24286f9204995bf78fb69f35dc" id="r_a4a834d24286f9204995bf78fb69f35dc"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4a834d24286f9204995bf78fb69f35dc">name</a> () const override</td></tr>
+<tr class="memdesc:a4a834d24286f9204995bf78fb69f35dc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Short, stable name for this trigger (suitable for logs/UI).  <br /></td></tr>
+<tr class="separator:a4a834d24286f9204995bf78fb69f35dc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3bf0d69122f801deca4b62db47262d9b" id="r_a3bf0d69122f801deca4b62db47262d9b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3bf0d69122f801deca4b62db47262d9b">why</a> (const TriggerContextStruct &amp;ctx) const override</td></tr>
+<tr class="memdesc:a3bf0d69122f801deca4b62db47262d9b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Explain why the last evaluation would be true/false in a structured way.  <br /></td></tr>
+<tr class="separator:a3bf0d69122f801deca4b62db47262d9b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aab88715f3c94437ca7f3fcb1698c69de" id="r_aab88715f3c94437ca7f3fcb1698c69de"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aab88715f3c94437ca7f3fcb1698c69de">describe</a> () const override</td></tr>
+<tr class="memdesc:aab88715f3c94437ca7f3fcb1698c69de"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable description of this trigger's logic.  <br /></td></tr>
+<tr class="separator:aab88715f3c94437ca7f3fcb1698c69de"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7e5568c9d7799b7f80ad0d3efe2cd143" id="r_a7e5568c9d7799b7f80ad0d3efe2cd143"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7e5568c9d7799b7f80ad0d3efe2cd143">numTriggers</a> () const override</td></tr>
+<tr class="memdesc:a7e5568c9d7799b7f80ad0d3efe2cd143"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to true since last reset.  <br /></td></tr>
+<tr class="separator:a7e5568c9d7799b7f80ad0d3efe2cd143"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae7776f4a526db3245e64a74a3b0172d3" id="r_ae7776f4a526db3245e64a74a3b0172d3"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae7776f4a526db3245e64a74a3b0172d3">numMisses</a> () const override</td></tr>
+<tr class="memdesc:ae7776f4a526db3245e64a74a3b0172d3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to false since last reset.  <br /></td></tr>
+<tr class="separator:ae7776f4a526db3245e64a74a3b0172d3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1trigger_1_1_trigger"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1trigger_1_1_trigger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a27f1fd8c8a93576f83a4f3320469c83a" id="r_a27f1fd8c8a93576f83a4f3320469c83a"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a27f1fd8c8a93576f83a4f3320469c83a">m_A</a></td></tr>
+<tr class="separator:a27f1fd8c8a93576f83a4f3320469c83a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a652ba8d1ac36b9713f426eedf2b1ead0" id="r_a652ba8d1ac36b9713f426eedf2b1ead0"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a652ba8d1ac36b9713f426eedf2b1ead0">m_N</a></td></tr>
+<tr class="separator:a652ba8d1ac36b9713f426eedf2b1ead0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a80d6f82095c3b5fdbc46776e183cdb1f" id="r_a80d6f82095c3b5fdbc46776e183cdb1f"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a80d6f82095c3b5fdbc46776e183cdb1f">m_counter</a> = 0</td></tr>
+<tr class="separator:a80d6f82095c3b5fdbc46776e183cdb1f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a021c30d6db015bb88a70af348a5dd336" id="r_a021c30d6db015bb88a70af348a5dd336"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a021c30d6db015bb88a70af348a5dd336">m_hits</a> = 0</td></tr>
+<tr class="separator:a021c30d6db015bb88a70af348a5dd336"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0a5c2c5aedc779c1535d3839c6a6596e" id="r_a0a5c2c5aedc779c1535d3839c6a6596e"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0a5c2c5aedc779c1535d3839c6a6596e">m_misses</a> = 0</td></tr>
+<tr class="separator:a0a5c2c5aedc779c1535d3839c6a6596e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab0a33f49be02d34b27f75edf75dbc06d" id="r_ab0a33f49be02d34b27f75edf75dbc06d"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab0a33f49be02d34b27f75edf75dbc06d">m_updates</a> = 0</td></tr>
+<tr class="separator:ab0a33f49be02d34b27f75edf75dbc06d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a87b6e54f3a0536d20709d7e746ec575d" id="r_a87b6e54f3a0536d20709d7e746ec575d"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a87b6e54f3a0536d20709d7e746ec575d">m_resets</a> = 0</td></tr>
+<tr class="separator:a87b6e54f3a0536d20709d7e746ec575d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><div class="compoundTemplParams">template&lt;typename TriggerContextStruct&gt;<br />
+class gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</div><p>Pass-through trigger that fires every Nth time its child trigger is true. </p>
+<p>On update(ctx), increments an internal counter when A.check(ctx) is true. check(ctx) returns true only when A.check(ctx) is true and the internal counter is a multiple of N.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::invalid_argument</td><td>When constructed with N==0. </td></tr>
+  </table>
+  </dd>
+</dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a69e5a3061926e1cd36fbd0a5285fa0a7" name="a69e5a3061926e1cd36fbd0a5285fa0a7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a69e5a3061926e1cd36fbd0a5285fa0a7">&#9670;&#160;</a></span>EveryNthTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::EveryNthTrigger </td>
+          <td>(</td>
+          <td class="paramtype">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;</td>          <td class="paramname"><span class="paramname"><em>A</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t</td>          <td class="paramname"><span class="paramname"><em>N</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel explicit">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae28e54330d575d9d1d3d8ebc6e7a6f75" name="ae28e54330d575d9d1d3d8ebc6e7a6f75"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae28e54330d575d9d1d3d8ebc6e7a6f75">&#9670;&#160;</a></span>~EveryNthTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::~<a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">EveryNthTrigger</a> </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel default">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a69fbb099f8d13d39602f58fa8aa8e7f2" name="a69fbb099f8d13d39602f58fa8aa8e7f2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a69fbb099f8d13d39602f58fa8aa8e7f2">&#9670;&#160;</a></span>check()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::check </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate the trigger condition against the provided context. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot (immutable view) used to evaluate the condition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if the condition is satisfied; false otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="aab88715f3c94437ca7f3fcb1698c69de" name="aab88715f3c94437ca7f3fcb1698c69de"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aab88715f3c94437ca7f3fcb1698c69de">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::describe </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Human-readable description of this trigger's logic. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a4a834d24286f9204995bf78fb69f35dc" name="a4a834d24286f9204995bf78fb69f35dc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4a834d24286f9204995bf78fb69f35dc">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::name </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Short, stable name for this trigger (suitable for logs/UI). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ae7776f4a526db3245e64a74a3b0172d3" name="ae7776f4a526db3245e64a74a3b0172d3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae7776f4a526db3245e64a74a3b0172d3">&#9670;&#160;</a></span>numMisses()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::numMisses </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to false since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a7e5568c9d7799b7f80ad0d3efe2cd143" name="a7e5568c9d7799b7f80ad0d3efe2cd143"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7e5568c9d7799b7f80ad0d3efe2cd143">&#9670;&#160;</a></span>numTriggers()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::numTriggers </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to true since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="abf218d255bde157540b51cd6a54f6eb1" name="abf218d255bde157540b51cd6a54f6eb1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abf218d255bde157540b51cd6a54f6eb1">&#9670;&#160;</a></span>reset()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::reset </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reset internal state and diagnostics counters. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a0dd783afab7ef6005f0241f9de7b31f6" name="a0dd783afab7ef6005f0241f9de7b31f6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0dd783afab7ef6005f0241f9de7b31f6">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::update </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Update any internal state with the given context (e.g., counters, windows). </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a3bf0d69122f801deca4b62db47262d9b" name="a3bf0d69122f801deca4b62db47262d9b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3bf0d69122f801deca4b62db47262d9b">&#9670;&#160;</a></span>why()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::why </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Explain why the last evaluation would be true/false in a structured way. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot for the explanation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> tree with a boolean value and per-cause details. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a27f1fd8c8a93576f83a4f3320469c83a" name="a27f1fd8c8a93576f83a4f3320469c83a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a27f1fd8c8a93576f83a4f3320469c83a">&#9670;&#160;</a></span>m_A</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt;<a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt;TriggerContextStruct&gt; &gt; <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::m_A</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a80d6f82095c3b5fdbc46776e183cdb1f" name="a80d6f82095c3b5fdbc46776e183cdb1f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a80d6f82095c3b5fdbc46776e183cdb1f">&#9670;&#160;</a></span>m_counter</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::m_counter = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a021c30d6db015bb88a70af348a5dd336" name="a021c30d6db015bb88a70af348a5dd336"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a021c30d6db015bb88a70af348a5dd336">&#9670;&#160;</a></span>m_hits</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::m_hits = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a0a5c2c5aedc779c1535d3839c6a6596e" name="a0a5c2c5aedc779c1535d3839c6a6596e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0a5c2c5aedc779c1535d3839c6a6596e">&#9670;&#160;</a></span>m_misses</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::m_misses = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a652ba8d1ac36b9713f426eedf2b1ead0" name="a652ba8d1ac36b9713f426eedf2b1ead0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a652ba8d1ac36b9713f426eedf2b1ead0">&#9670;&#160;</a></span>m_N</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::m_N</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a87b6e54f3a0536d20709d7e746ec575d" name="a87b6e54f3a0536d20709d7e746ec575d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a87b6e54f3a0536d20709d7e746ec575d">&#9670;&#160;</a></span>m_resets</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::m_resets = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab0a33f49be02d34b27f75edf75dbc06d" name="ab0a33f49be02d34b27f75edf75dbc06d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab0a33f49be02d34b27f75edf75dbc06d">&#9670;&#160;</a></span>m_updates</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::m_updates = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/trigger/<a class="el" href="trigger__logical_8h.html">trigger_logical.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li><li class="navelem"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">EveryNthTrigger</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.js b/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.js
new file mode 100644
index 00000000..166c3dba
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.js
@@ -0,0 +1,20 @@
+var classgridfire_1_1trigger_1_1_every_nth_trigger =
+[
+    [ "EveryNthTrigger", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69e5a3061926e1cd36fbd0a5285fa0a7", null ],
+    [ "~EveryNthTrigger", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae28e54330d575d9d1d3d8ebc6e7a6f75", null ],
+    [ "check", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69fbb099f8d13d39602f58fa8aa8e7f2", null ],
+    [ "describe", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#aab88715f3c94437ca7f3fcb1698c69de", null ],
+    [ "name", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a4a834d24286f9204995bf78fb69f35dc", null ],
+    [ "numMisses", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae7776f4a526db3245e64a74a3b0172d3", null ],
+    [ "numTriggers", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a7e5568c9d7799b7f80ad0d3efe2cd143", null ],
+    [ "reset", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#abf218d255bde157540b51cd6a54f6eb1", null ],
+    [ "update", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0dd783afab7ef6005f0241f9de7b31f6", null ],
+    [ "why", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a3bf0d69122f801deca4b62db47262d9b", null ],
+    [ "m_A", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a27f1fd8c8a93576f83a4f3320469c83a", null ],
+    [ "m_counter", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a80d6f82095c3b5fdbc46776e183cdb1f", null ],
+    [ "m_hits", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a021c30d6db015bb88a70af348a5dd336", null ],
+    [ "m_misses", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0a5c2c5aedc779c1535d3839c6a6596e", null ],
+    [ "m_N", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a652ba8d1ac36b9713f426eedf2b1ead0", null ],
+    [ "m_resets", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a87b6e54f3a0536d20709d7e746ec575d", null ],
+    [ "m_updates", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#ab0a33f49be02d34b27f75edf75dbc06d", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.png b/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.png
new file mode 100644
index 0000000000000000000000000000000000000000..d3a9390de874c7b6578b4184ad46df946fe4b0b7
GIT binary patch
literal 1853
zcmcJQ`#;lr9LK+-$Xq&|lEQLgm65YLv#1P*t@V|5#Fkv5luJvTlUr`79wpsqqsbU^
zol=x*%2bNTmSrTDNM&Yjk7F)vnVqlBIXxcz0ev2i_xtnwyxxz`PoLNO{kh~qB5K3+
z;Q#<=gS+vr0047=IBA(GloK~QBB0H{#hFY{DwPn5$7Ui@8aUQlP=BsT=ZW9He-G(c
z{{8}}rV;K+as#0A*JY)W*#Q7*%^?1F@+sIjYcyoqOpD;Y&2?xl;RA-{+^_+8_UdC3
z%E?C3#tyZLEh03kaFr8kgAomhLW1kyZ2G5Szzj_O2FxW7KXsJ{`_eC0M?@-7s2YET
z0X8S<Wg_eI%gL0(2@hU3*S83|3^_t)zMbA!fv|VtP#^5!+67;GyV}oR`rM@4La#}A
zRUqMrXPqr=_@^%4XCgOJ<K~?C*ozFK*q=jXJ{Rhv!pptsBuii#C)S?|G{EpAbN$Ih
zh!o?55We(y18VXwAN&eGgU~3Pe}D2>gsSK5(-bPd4cBw@5vFW4MjQ@!`tb~}C?t0(
zFGnr8wOmjx&ruyuTQJ|&UFXq!Q>ZK8-?rQtLL3%7B1#y!IB9A=COcS0jeZ}_${oLD
z1e2ua4wcq)O61LRlHR46VbUYo+z6_5717o=8o}O+inyCAV+@$L-G9y!Obk4^xM$>*
zx9jUfR<#rP##s?#puVK!jy_Mpm@IRm@9IF|>ET776rF_}F$&5{bZXCHo-_yDnU=~1
zkiI}`N}d<Gl$dM+yZ%$Isio8*FCa%qFf!dx*M39GzHfkL|NB6Cuz3vya2|+TWe=O5
zmafFZ`o7YKwRl(^MBcjAFzD)!jhVnRMQN_4g=ukkdck#MwCNcqdcI0Aa=Y38AW;$1
zeOt@pL9?DW-3m@Y-a)w@qE&8XGeNZ)Ow&fIc<3p%jV+Jb(Gs6n@BIgtsAm%_uV$`^
zuuWUgLa;Lj)4$oqZP7NNk&Cv0Re^PiBZ!i*x5C3%gkg=(;9a-K-i>i(>+NQd{Zm}e
zkNvM(rhXOFjO(`qK3y9y6B|ktCKLO`4cs+(F(-m2n)qcJoGh*AsuRC7HayfsOJ{-E
zWtC*b?G9#6tfBeImGQ$_+Sj}+0t6#KCH&~{fiZV=kb6&m#70nFoTG{(Pw!-xJhKqk
zgj8JL$}wkWQjSITCBNdk6Q)cZV?~=b`K<~XZXQV9nVRcg8FhBmfU12crm~M$z3iZo
z%%^*YdW@H&dK2!Az>AaU7W+whqYKuP)=txBhRV2XL-Q_;@rA}1n|;GI^Yz)(idRiH
z$d!jVcaKv1*|kG8lM=HMH3RO@m#0qcNjqi;P@~wk^*tD{2HT@{+{&d}a*Fz#+AlN>
zXBf;GYy#yzFHDq{=Ojq5z3`jn$udEM>%o}3@0$B-m+J}AT;YXj^ee!^`O|;{U<+ph
zr{yw@JRoF|V*b|31AHJVg=YcKT==me$JnR)dpNX~Z?^T@iqXu-fIP;`fc*7cx~(}a
zocZF(7;oi4V@W6YMT{&XgLO<XJX%}*j+69^H%7vc-d*p>)_u}@&(1sL9U*a|6@xi$
zN$Z*`8trjnhhcaZtM&#35JmwDW2g|WF`atlaT^Xh@Tg*@)c1>;RZ-*UN_^(?-d%cX
zIi>NUwgO6z4*#`Ceho6-)Fd~1{%z{1);TISmWXb(Voxd)%7=uJH#;Y@cB@0qyI<R_
zv_85ulD66;>{Hiyw+JnGMJge3J$aA0vFRBG)!nxkYd2SXTr9hO#iQGdT@yz3_-%2D
zQL<P^?)xHa_{K(ng{Ew~z)=?+_wuj~#u?x{T3!s{jljhL6egl3KTLY!mQ8x@%+gbg
zWqc9Vel&J)g@BrLNz1~-u1zr8kphed1f^P225W7nxUQYG@F<t1RT8le443oqfMY02
zpEOQuyB~38+tBEpM3L8NwDAjSgu|nRjQyPAhk^QsWPvLj`Jy--jCs#J;X2nFgc*y+
z@$T*(*teY)1Iq=xU_6WI7Z6#dkwOf!(c$sNF6m%9c)_H-wOEY7o8o8r+v_zTmG;s^
z8U98xeKSM*xXP>4?b+%90kh7XG^@qO#km7mOc?q5)S)RZ-@GTtgV9J(!j5UVU8O{K
R=RhAF01`;}Qint5{sBfPTtxr?

literal 0
HcmV?d00001

diff --git a/docs/html/classgridfire_1_1trigger_1_1_logical_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1_logical_trigger-members.html
new file mode 100644
index 00000000..3d8d7d55
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1_logical_trigger-members.html
@@ -0,0 +1,126 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1_logical_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt; Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1_logical_trigger.html">gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88">check</a>(const TriggerContextStruct &amp;ctx) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f">describe</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7">name</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7">numMisses</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">numTriggers</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d">reset</a>()=0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc">update</a>(const TriggerContextStruct &amp;ctx)=0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea">why</a>(const TriggerContextStruct &amp;ctx) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1_logical_trigger.html b/docs/html/classgridfire_1_1trigger_1_1_logical_trigger.html
new file mode 100644
index 00000000..70778799
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1_logical_trigger.html
@@ -0,0 +1,167 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt; Class Template Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1_logical_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="classgridfire_1_1trigger_1_1_logical_trigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt; Class Template Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;trigger_logical.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt;:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="classgridfire_1_1trigger_1_1_logical_trigger.png" usemap="#gridfire::trigger::LogicalTrigger_3C_20TriggerContextStruct_20_3E_map" alt=""/>
+  <map id="gridfire::trigger::LogicalTrigger_3C_20TriggerContextStruct_20_3E_map" name="gridfire::trigger::LogicalTrigger_3C_20TriggerContextStruct_20_3E_map">
+<area href="classgridfire_1_1trigger_1_1_trigger.html" title="Generic trigger interface for signaling events/conditions during integration." alt="gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;" shape="rect" coords="519,0,855,24"/>
+<area href="classgridfire_1_1trigger_1_1_and_trigger.html" title="Logical conjunction of two triggers with short-circuit evaluation." alt="gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;" shape="rect" coords="0,112,336,136"/>
+<area href="classgridfire_1_1trigger_1_1_every_nth_trigger.html" title="Pass-through trigger that fires every Nth time its child trigger is true." alt="gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;" shape="rect" coords="346,112,682,136"/>
+<area href="classgridfire_1_1trigger_1_1_not_trigger.html" title="Logical negation of a trigger." alt="gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;" shape="rect" coords="692,112,1028,136"/>
+<area href="classgridfire_1_1trigger_1_1_or_trigger.html" title="Logical disjunction of two triggers with short-circuit evaluation." alt="gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;" shape="rect" coords="1038,112,1374,136"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1trigger_1_1_trigger"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1trigger_1_1_trigger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1579ffb1c841cda4e67990b42d400d88 inherit pub_methods_classgridfire_1_1trigger_1_1_trigger" id="r_a1579ffb1c841cda4e67990b42d400d88"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88">check</a> (const TriggerContextStruct &amp;ctx) const =0</td></tr>
+<tr class="memdesc:a1579ffb1c841cda4e67990b42d400d88 inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the trigger condition against the provided context.  <br /></td></tr>
+<tr class="separator:a1579ffb1c841cda4e67990b42d400d88 inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a048899795704f68668960454d118a6fc inherit pub_methods_classgridfire_1_1trigger_1_1_trigger" id="r_a048899795704f68668960454d118a6fc"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc">update</a> (const TriggerContextStruct &amp;ctx)=0</td></tr>
+<tr class="memdesc:a048899795704f68668960454d118a6fc inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update any internal state with the given context (e.g., counters, windows).  <br /></td></tr>
+<tr class="separator:a048899795704f68668960454d118a6fc inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af652af761675736419b961b6946c728d inherit pub_methods_classgridfire_1_1trigger_1_1_trigger" id="r_af652af761675736419b961b6946c728d"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d">reset</a> ()=0</td></tr>
+<tr class="memdesc:af652af761675736419b961b6946c728d inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset internal state and diagnostics counters.  <br /></td></tr>
+<tr class="separator:af652af761675736419b961b6946c728d inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3e5b017147f22ca0733733cd39e334b7 inherit pub_methods_classgridfire_1_1trigger_1_1_trigger" id="r_a3e5b017147f22ca0733733cd39e334b7"><td class="memItemLeft" align="right" valign="top">virtual std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7">name</a> () const =0</td></tr>
+<tr class="memdesc:a3e5b017147f22ca0733733cd39e334b7 inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Short, stable name for this trigger (suitable for logs/UI).  <br /></td></tr>
+<tr class="separator:a3e5b017147f22ca0733733cd39e334b7 inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a402cdd062e9479abbcca02e3d94e528f inherit pub_methods_classgridfire_1_1trigger_1_1_trigger" id="r_a402cdd062e9479abbcca02e3d94e528f"><td class="memItemLeft" align="right" valign="top">virtual std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f">describe</a> () const =0</td></tr>
+<tr class="memdesc:a402cdd062e9479abbcca02e3d94e528f inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable description of this trigger's logic.  <br /></td></tr>
+<tr class="separator:a402cdd062e9479abbcca02e3d94e528f inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9f020d828ca36a601b780566cc3377ea inherit pub_methods_classgridfire_1_1trigger_1_1_trigger" id="r_a9f020d828ca36a601b780566cc3377ea"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea">why</a> (const TriggerContextStruct &amp;ctx) const =0</td></tr>
+<tr class="memdesc:a9f020d828ca36a601b780566cc3377ea inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Explain why the last evaluation would be true/false in a structured way.  <br /></td></tr>
+<tr class="separator:a9f020d828ca36a601b780566cc3377ea inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4ea3abfb76a09c4f55ad05d73a2cf12d inherit pub_methods_classgridfire_1_1trigger_1_1_trigger" id="r_a4ea3abfb76a09c4f55ad05d73a2cf12d"><td class="memItemLeft" align="right" valign="top">virtual size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">numTriggers</a> () const =0</td></tr>
+<tr class="memdesc:a4ea3abfb76a09c4f55ad05d73a2cf12d inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to true since last reset.  <br /></td></tr>
+<tr class="separator:a4ea3abfb76a09c4f55ad05d73a2cf12d inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a81848e5af844795d879b6d885a2701d7 inherit pub_methods_classgridfire_1_1trigger_1_1_trigger" id="r_a81848e5af844795d879b6d885a2701d7"><td class="memItemLeft" align="right" valign="top">virtual size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7">numMisses</a> () const =0</td></tr>
+<tr class="memdesc:a81848e5af844795d879b6d885a2701d7 inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to false since last reset.  <br /></td></tr>
+<tr class="separator:a81848e5af844795d879b6d885a2701d7 inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/trigger/<a class="el" href="trigger__logical_8h.html">trigger_logical.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li><li class="navelem"><a class="el" href="classgridfire_1_1trigger_1_1_logical_trigger.html">LogicalTrigger</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1_logical_trigger.png b/docs/html/classgridfire_1_1trigger_1_1_logical_trigger.png
new file mode 100644
index 0000000000000000000000000000000000000000..699b66c0a3ef8bc68a2b172c135413d08fe81ae9
GIT binary patch
literal 3350
zcmd5<X<SoR77vScLB!e-MAo)c+yEV96^sZXs9_Nv2$)2wSlI;G2?<yQBCUu8D+01t
zmY0&Sh1CRw5ef(>0Ro5(l(K{XVGBu!A@h=eoe%S2KFs`n^FEw&-@W&od*8YL|2^j=
zIXRqD+_8TL3<guQx3jqfgKa@U?fcv0AbHRNb`(--P8VIzibNu)IX%k>PiZbTJ$5K~
zU;3Nr(a}+;->A#&7iesI*d+%S81ycAOk}hAV6dI}_BK|oQ8IHMK7>@hQ9e7?cJ}Aj
zLiD18tNh2Lebd6&#Eft6PkSP`7f+fdzyw9C2K_K3Jy1@5+wQBiVE~X1`Y9B+LoW;)
z5&&d<PC0W2COCj81BV|>@0FDwG<oL_^xv={?bd!tO+pbs<F7FZFqzdZFO21b;uh~Z
z5Ntn=<t=oA`%_x@LB4ze;@a3fK7wSBkb?IzuM+#%7BmxnqT7Y}!l#hi$GJf(ohS0X
zN8y_#W95l-jHSB65BylmY{wufij<o}O8kSSlGfYK{G-D8@>JxHoeaOsk%^Tt?k{-0
zVwEU1vh10oaP3uH4G6kRHx^w=Py4o8_9Uf=s#b0MqDhncT*+L2{|laAYH4xBmUi>w
z?a$K={oc(T!w|p7?#TmZw!b?fzpXsz$#i(f#}nf<AEVon522s*^wpFz9Y`*v58bi{
z1+UJ3w~YL1P#OlWX^wzRMi~GX5N1ypHv>Irju;KF$cGz3rLp$BvXumA=nToRgY6jE
zu=eUPEj436*;trIFLlDRwqS62bcv&r7gjJ!9X5_iE0`ly(agX$Lzhzqxg~+Vv}B_x
zjO9)=e1LVmoKUIqn~@~Y-4`gaF+K-+38}U}DXvq<BhN!kk!2>ghd=zL)IsnIIeKfY
z;i)6ryvaM2fw4rRTlWnZss?1Z6+&mKeU!$sZUX?lvEKTyJ0_j(Cjh`mTY7$wTQ64R
zWJ8#~#%R~lUIYLn-$#9U`VMaS5-HsDquZ7A?&oqZJg5bwAgCw}7K%j%54!?-QV)m~
zPk^i{9VwuLV3*YV3yK>MXuGmQMs_x9nhg3GO2GwTE`i8u2)qN6k(K8ug~p5Zw(>*?
z26kW7YrFOlGJ$$hH+#?#$!KUlFqr`fCS_y;PX8&LlDRR(NW3_NOF!`v+NbaIi@^X{
z5R$|n0+Vt3LJVdZ*<TNcKUr4(GD5s9XpR3D2MbzL!KUiXW5K2YQa-A$QQ6iEu26ZC
zZvraYL`pcs$}kt#^eNs{w%}91S8<G>jffXxDA+}uxq2dj%GPaL7?V9K8ieylgV((*
z=IiH^iz*iINzYVphp`qT%YEWlHBS88Or^&8j6x3Gj~=lED92|6F40*0R*c3D35H&t
znJh3>cbMe;8-f-T=kqXB>}^f|wO9OI^xlN=ZXCDLH$d%HlxGVsgg@hHh92kKJ04GE
z7oU@2B16|<(lmxy(BxcJ#ifr^SFGAb%RB_v?+^JNn;_h7qp2ar3%#$*&Dk7Kh^bp>
z4=FN~04tb8KeSAH@P27Z!$tTZ9dRqJke)u?EhTJK(v>pv3hq6-Nrfy0V=2HJF~aqj
zGWv!75K4|3Y9?Hr>*oJsW^6CZ$w;p;eK{KyWTXV4VNj1f!?EWJeQ)KfV6s<**E^Uu
zL(BC1*Q`h``3^-(=Sj7hcnCeSPrT4MVaF@F<tV?K`=K!J7i~z^9Ln|}1Rpz+H2lQ)
z!{tySy=8%OjpFcG<KY<n4Z4TIvCMBF`uf_!A^QGI7t`0r_%Uj~0s4WQk`^{DghZbj
zU&X=AlueM6$BE+&kGzc-%XM#fU%hRAjHe1zC8)0JXIY1Ha0~;8%E5OgxY0o)MhF~(
z%aXFraJh&3njIg;ykh!tN$|pCKC=iqP>vKv8G@-`URjEMw!+rSvANt<B&`pEl7s|<
zCZb3g$gK#unFAo7pOV0wfXeuk1t3^{N&|nvvI_!le9Kty;AavFijJL=XqdlbUl4gi
zELx?kJhH*cfh8Y0Pn;EYU)9(k@Mku}|0Zz*O*K>6f-N*t#-c1VTNa}%=9RaVD{lXr
z=cDWSTkMq~<!!y^V6}Gp8HLoNkZMlUak^=hnxL%XAy$g^d2jFPDCpT$ij`XG=?x>X
zGS>Ni!$_<G>|{5MAlt!5@;f$+AXWb5|9C;{#Y!YSJojY<t6^TwPTYo8{Y$<DfCLcK
zdwQ!M1f2l#7JDdLN`*L~CtfGG0c7p=PePpV9|b^jm34+Tg}5M4OD*#R`tRy^Z3^+7
zZe0lwKq!oxqTGgrUko$d=?)l~B`RsfdH_b_#2Np-WyZ-uY|o8o+GSpgP4@+hy{9zi
zId5Wr2jAP8A!C7l%PE5<R8L!0hOqW-tc$GLIh+d*A2DmN(m?*a=z`F?UZ2J?9i<&l
zZ#@>!1!ig%vuazTxUDJdg{zv@-fEOvY7?y9W!uadPUyW@FWD?xTon;seJw6)Ho~?J
zIfHKJY^9)b&NE1Kd|&%yOYszeB{x<S7SeDrboI}sXWdgQ&cZ~2a}fbMbfTU=krbA>
z$P2;!s_6J~=m(;fMbtddzY<jrWSup$gkN6p$y@g8F~R9pftl)}Q`6t<xw(&Xk1tHt
zXmll&)h>oVg{QGXDLJ-v7G#4qqu+)EtlQ|dym3sldtBF4|G{x)a?v8=6fw}akpFj0
z{m?a?7|nU1TcFBBGD>TgnQF|E&H6v`RP6G6`jjTQCK0n|D8`J|@k{IHiSU{5jya{M
z=0N`PLoK|f7Mx_8p?A}phAg2SY&)tes@huhOmE!dS0&Ey!45WlRtR6e5&wQ}xx&hT
z=1(YL$Hm9_wCU6R8v}|p;&kZ%#!^&`PKYkeoC#lg*NYYohEzTELBJEtT@ju0qHiMe
zPyNVo#|V8Mr{yq@MMg$hlSE^AweMIzl;E{hn4Hjv*$51>HaVTiNee+fr|V8|i`9l0
z7h~R$VuuCYhW_h8F{^JfQ9E7ubA~K;407*83Eks-6O9#TIvu#u@YPK1%9`29h?5lJ
z`_|5tHT(MY5_;)^K{_66n6P@9-uwPxF~-ty!8muS@S<{cHS+)=y5zgP$?)7PC*6BU
zk#kT$|A4bYx(RZDx0-;0>rDG#0#!M4AJ<zSB8ha{p>DbWAA%#&*)<*kv~%3@p&T6?
zQ{91<yB?0>a+a|<DVKn>Yqx3i*VqBNuTrRJ7YB<|9be1Zzg1xNM%Rmsd|cc#v_EKd
zdf%#RZLaFdp6%5PGEH*UPNca?jr27;lGZbp5(ZZn4}#z9?0Eu$jAepzO?^1f&yIQl
zh^!t5g<);qcIqrRM$Vm^AAH@u-WUKsL7&2CXmtYs`&jhhvXPRYl*+C$0vOvPbQ795
z>j(0lK>!#<&kv`3s8Hankt&6wS8`e8U3f+}tCug3iG_C<*Al@sBc+;|ru$3D*}Owm
z20y)Q8X@O4TvM6h<oXEe>(}$3YRn1XXm-~40YC}p>5y6m`dLYYxMuru2!u*PyUI;*
zUtHDec#${n2gyzGA72t!CVAtRqWL-@LR#e^{`Df_X?cEqL`R`9t{nP<f!UvRupyqg
GdiS4(Om_MJ

literal 0
HcmV?d00001

diff --git a/docs/html/classgridfire_1_1trigger_1_1_not_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1_not_trigger-members.html
new file mode 100644
index 00000000..27e51025
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1_not_trigger-members.html
@@ -0,0 +1,133 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1_not_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt; Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#ae453a72df20fdd416443ef7867f86b92">check</a>(const TriggerContextStruct &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#ad8166350329db3e1f50954afbb311a35">describe</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a0d7818e59a8d86e86053bcb6d5d7d2b8">m_A</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a86404f57e0e0683fc56e0e49321e5e3b">m_hits</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#aa1253080cd57cdf0be6780773ce6c73c">m_misses</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#adb9c36fa46a30c28e68c59a7d3bd825d">m_resets</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#ae4830ed152643770b0888b040475b000">m_updates</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#acc3bd2938f7746997fb1d255681d8b20">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a4828599aae5ff37f4c82e51fe192bed3">NotTrigger</a>(std::unique_ptr&lt; Trigger&lt; TriggerContextStruct &gt; &gt; A)</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a2f9b0d6a6ac54f6371c5a208c06826ea">numMisses</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#ae2d27d72af9e1fbf711a58e4583b43a3">numTriggers</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#afe337517b77e5433d92ded3a64565141">reset</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a846432abf33c7602af0fbb5475c0ad32">update</a>(const TriggerContextStruct &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#abfb3eb7befba646ce9f11f36a63750ae">why</a>(const TriggerContextStruct &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#afa4173490171d1251cc1757b92841755">~NotTrigger</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1_not_trigger.html b/docs/html/classgridfire_1_1trigger_1_1_not_trigger.html
new file mode 100644
index 00000000..8959a508
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1_not_trigger.html
@@ -0,0 +1,635 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt; Class Template Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1_not_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1trigger_1_1_not_trigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt; Class Template Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Logical negation of a trigger.  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;trigger_logical.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="classgridfire_1_1trigger_1_1_not_trigger.png" usemap="#gridfire::trigger::NotTrigger_3C_20TriggerContextStruct_20_3E_map" alt=""/>
+  <map id="gridfire::trigger::NotTrigger_3C_20TriggerContextStruct_20_3E_map" name="gridfire::trigger::NotTrigger_3C_20TriggerContextStruct_20_3E_map">
+<area href="classgridfire_1_1trigger_1_1_logical_trigger.html" alt="gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt;" shape="rect" coords="0,56,324,80"/>
+<area href="classgridfire_1_1trigger_1_1_trigger.html" title="Generic trigger interface for signaling events/conditions during integration." alt="gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;" shape="rect" coords="0,0,324,24"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a4828599aae5ff37f4c82e51fe192bed3" id="r_a4828599aae5ff37f4c82e51fe192bed3"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4828599aae5ff37f4c82e51fe192bed3">NotTrigger</a> (std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt; A)</td></tr>
+<tr class="separator:a4828599aae5ff37f4c82e51fe192bed3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afa4173490171d1251cc1757b92841755" id="r_afa4173490171d1251cc1757b92841755"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afa4173490171d1251cc1757b92841755">~NotTrigger</a> () override=default</td></tr>
+<tr class="separator:afa4173490171d1251cc1757b92841755"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae453a72df20fdd416443ef7867f86b92" id="r_ae453a72df20fdd416443ef7867f86b92"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae453a72df20fdd416443ef7867f86b92">check</a> (const TriggerContextStruct &amp;ctx) const override</td></tr>
+<tr class="memdesc:ae453a72df20fdd416443ef7867f86b92"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the trigger condition against the provided context.  <br /></td></tr>
+<tr class="separator:ae453a72df20fdd416443ef7867f86b92"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a846432abf33c7602af0fbb5475c0ad32" id="r_a846432abf33c7602af0fbb5475c0ad32"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a846432abf33c7602af0fbb5475c0ad32">update</a> (const TriggerContextStruct &amp;ctx) override</td></tr>
+<tr class="memdesc:a846432abf33c7602af0fbb5475c0ad32"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update any internal state with the given context (e.g., counters, windows).  <br /></td></tr>
+<tr class="separator:a846432abf33c7602af0fbb5475c0ad32"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afe337517b77e5433d92ded3a64565141" id="r_afe337517b77e5433d92ded3a64565141"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afe337517b77e5433d92ded3a64565141">reset</a> () override</td></tr>
+<tr class="memdesc:afe337517b77e5433d92ded3a64565141"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset internal state and diagnostics counters.  <br /></td></tr>
+<tr class="separator:afe337517b77e5433d92ded3a64565141"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acc3bd2938f7746997fb1d255681d8b20" id="r_acc3bd2938f7746997fb1d255681d8b20"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#acc3bd2938f7746997fb1d255681d8b20">name</a> () const override</td></tr>
+<tr class="memdesc:acc3bd2938f7746997fb1d255681d8b20"><td class="mdescLeft">&#160;</td><td class="mdescRight">Short, stable name for this trigger (suitable for logs/UI).  <br /></td></tr>
+<tr class="separator:acc3bd2938f7746997fb1d255681d8b20"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abfb3eb7befba646ce9f11f36a63750ae" id="r_abfb3eb7befba646ce9f11f36a63750ae"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abfb3eb7befba646ce9f11f36a63750ae">why</a> (const TriggerContextStruct &amp;ctx) const override</td></tr>
+<tr class="memdesc:abfb3eb7befba646ce9f11f36a63750ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Explain why the last evaluation would be true/false in a structured way.  <br /></td></tr>
+<tr class="separator:abfb3eb7befba646ce9f11f36a63750ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad8166350329db3e1f50954afbb311a35" id="r_ad8166350329db3e1f50954afbb311a35"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad8166350329db3e1f50954afbb311a35">describe</a> () const override</td></tr>
+<tr class="memdesc:ad8166350329db3e1f50954afbb311a35"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable description of this trigger's logic.  <br /></td></tr>
+<tr class="separator:ad8166350329db3e1f50954afbb311a35"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae2d27d72af9e1fbf711a58e4583b43a3" id="r_ae2d27d72af9e1fbf711a58e4583b43a3"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae2d27d72af9e1fbf711a58e4583b43a3">numTriggers</a> () const override</td></tr>
+<tr class="memdesc:ae2d27d72af9e1fbf711a58e4583b43a3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to true since last reset.  <br /></td></tr>
+<tr class="separator:ae2d27d72af9e1fbf711a58e4583b43a3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2f9b0d6a6ac54f6371c5a208c06826ea" id="r_a2f9b0d6a6ac54f6371c5a208c06826ea"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2f9b0d6a6ac54f6371c5a208c06826ea">numMisses</a> () const override</td></tr>
+<tr class="memdesc:a2f9b0d6a6ac54f6371c5a208c06826ea"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to false since last reset.  <br /></td></tr>
+<tr class="separator:a2f9b0d6a6ac54f6371c5a208c06826ea"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1trigger_1_1_trigger"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1trigger_1_1_trigger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a0d7818e59a8d86e86053bcb6d5d7d2b8" id="r_a0d7818e59a8d86e86053bcb6d5d7d2b8"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0d7818e59a8d86e86053bcb6d5d7d2b8">m_A</a></td></tr>
+<tr class="separator:a0d7818e59a8d86e86053bcb6d5d7d2b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a86404f57e0e0683fc56e0e49321e5e3b" id="r_a86404f57e0e0683fc56e0e49321e5e3b"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a86404f57e0e0683fc56e0e49321e5e3b">m_hits</a> = 0</td></tr>
+<tr class="separator:a86404f57e0e0683fc56e0e49321e5e3b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa1253080cd57cdf0be6780773ce6c73c" id="r_aa1253080cd57cdf0be6780773ce6c73c"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa1253080cd57cdf0be6780773ce6c73c">m_misses</a> = 0</td></tr>
+<tr class="separator:aa1253080cd57cdf0be6780773ce6c73c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae4830ed152643770b0888b040475b000" id="r_ae4830ed152643770b0888b040475b000"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae4830ed152643770b0888b040475b000">m_updates</a> = 0</td></tr>
+<tr class="separator:ae4830ed152643770b0888b040475b000"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adb9c36fa46a30c28e68c59a7d3bd825d" id="r_adb9c36fa46a30c28e68c59a7d3bd825d"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#adb9c36fa46a30c28e68c59a7d3bd825d">m_resets</a> = 0</td></tr>
+<tr class="separator:adb9c36fa46a30c28e68c59a7d3bd825d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><div class="compoundTemplParams">template&lt;typename TriggerContextStruct&gt;<br />
+class gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</div><p>Logical negation of a trigger. </p>
+<p>check(ctx) returns !A.check(ctx). why(ctx) explains the inverted condition. Counter semantics match the other logical triggers. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a4828599aae5ff37f4c82e51fe192bed3" name="a4828599aae5ff37f4c82e51fe192bed3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4828599aae5ff37f4c82e51fe192bed3">&#9670;&#160;</a></span>NotTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::NotTrigger </td>
+          <td>(</td>
+          <td class="paramtype">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;</td>          <td class="paramname"><span class="paramname"><em>A</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel explicit">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="afa4173490171d1251cc1757b92841755" name="afa4173490171d1251cc1757b92841755"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afa4173490171d1251cc1757b92841755">&#9670;&#160;</a></span>~NotTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::~<a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">NotTrigger</a> </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel default">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ae453a72df20fdd416443ef7867f86b92" name="ae453a72df20fdd416443ef7867f86b92"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae453a72df20fdd416443ef7867f86b92">&#9670;&#160;</a></span>check()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::check </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate the trigger condition against the provided context. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot (immutable view) used to evaluate the condition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if the condition is satisfied; false otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ad8166350329db3e1f50954afbb311a35" name="ad8166350329db3e1f50954afbb311a35"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad8166350329db3e1f50954afbb311a35">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::describe </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Human-readable description of this trigger's logic. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="acc3bd2938f7746997fb1d255681d8b20" name="acc3bd2938f7746997fb1d255681d8b20"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acc3bd2938f7746997fb1d255681d8b20">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::name </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Short, stable name for this trigger (suitable for logs/UI). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a2f9b0d6a6ac54f6371c5a208c06826ea" name="a2f9b0d6a6ac54f6371c5a208c06826ea"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2f9b0d6a6ac54f6371c5a208c06826ea">&#9670;&#160;</a></span>numMisses()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::numMisses </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to false since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ae2d27d72af9e1fbf711a58e4583b43a3" name="ae2d27d72af9e1fbf711a58e4583b43a3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae2d27d72af9e1fbf711a58e4583b43a3">&#9670;&#160;</a></span>numTriggers()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::numTriggers </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to true since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="afe337517b77e5433d92ded3a64565141" name="afe337517b77e5433d92ded3a64565141"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afe337517b77e5433d92ded3a64565141">&#9670;&#160;</a></span>reset()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::reset </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reset internal state and diagnostics counters. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a846432abf33c7602af0fbb5475c0ad32" name="a846432abf33c7602af0fbb5475c0ad32"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a846432abf33c7602af0fbb5475c0ad32">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::update </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Update any internal state with the given context (e.g., counters, windows). </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="abfb3eb7befba646ce9f11f36a63750ae" name="abfb3eb7befba646ce9f11f36a63750ae"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abfb3eb7befba646ce9f11f36a63750ae">&#9670;&#160;</a></span>why()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::why </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Explain why the last evaluation would be true/false in a structured way. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot for the explanation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> tree with a boolean value and per-cause details. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a0d7818e59a8d86e86053bcb6d5d7d2b8" name="a0d7818e59a8d86e86053bcb6d5d7d2b8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0d7818e59a8d86e86053bcb6d5d7d2b8">&#9670;&#160;</a></span>m_A</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt;<a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt;TriggerContextStruct&gt; &gt; <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::m_A</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a86404f57e0e0683fc56e0e49321e5e3b" name="a86404f57e0e0683fc56e0e49321e5e3b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a86404f57e0e0683fc56e0e49321e5e3b">&#9670;&#160;</a></span>m_hits</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::m_hits = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aa1253080cd57cdf0be6780773ce6c73c" name="aa1253080cd57cdf0be6780773ce6c73c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa1253080cd57cdf0be6780773ce6c73c">&#9670;&#160;</a></span>m_misses</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::m_misses = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="adb9c36fa46a30c28e68c59a7d3bd825d" name="adb9c36fa46a30c28e68c59a7d3bd825d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adb9c36fa46a30c28e68c59a7d3bd825d">&#9670;&#160;</a></span>m_resets</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::m_resets = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae4830ed152643770b0888b040475b000" name="ae4830ed152643770b0888b040475b000"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae4830ed152643770b0888b040475b000">&#9670;&#160;</a></span>m_updates</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::m_updates = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/trigger/<a class="el" href="trigger__logical_8h.html">trigger_logical.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li><li class="navelem"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">NotTrigger</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1_not_trigger.js b/docs/html/classgridfire_1_1trigger_1_1_not_trigger.js
new file mode 100644
index 00000000..4874e0fb
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1_not_trigger.js
@@ -0,0 +1,18 @@
+var classgridfire_1_1trigger_1_1_not_trigger =
+[
+    [ "NotTrigger", "classgridfire_1_1trigger_1_1_not_trigger.html#a4828599aae5ff37f4c82e51fe192bed3", null ],
+    [ "~NotTrigger", "classgridfire_1_1trigger_1_1_not_trigger.html#afa4173490171d1251cc1757b92841755", null ],
+    [ "check", "classgridfire_1_1trigger_1_1_not_trigger.html#ae453a72df20fdd416443ef7867f86b92", null ],
+    [ "describe", "classgridfire_1_1trigger_1_1_not_trigger.html#ad8166350329db3e1f50954afbb311a35", null ],
+    [ "name", "classgridfire_1_1trigger_1_1_not_trigger.html#acc3bd2938f7746997fb1d255681d8b20", null ],
+    [ "numMisses", "classgridfire_1_1trigger_1_1_not_trigger.html#a2f9b0d6a6ac54f6371c5a208c06826ea", null ],
+    [ "numTriggers", "classgridfire_1_1trigger_1_1_not_trigger.html#ae2d27d72af9e1fbf711a58e4583b43a3", null ],
+    [ "reset", "classgridfire_1_1trigger_1_1_not_trigger.html#afe337517b77e5433d92ded3a64565141", null ],
+    [ "update", "classgridfire_1_1trigger_1_1_not_trigger.html#a846432abf33c7602af0fbb5475c0ad32", null ],
+    [ "why", "classgridfire_1_1trigger_1_1_not_trigger.html#abfb3eb7befba646ce9f11f36a63750ae", null ],
+    [ "m_A", "classgridfire_1_1trigger_1_1_not_trigger.html#a0d7818e59a8d86e86053bcb6d5d7d2b8", null ],
+    [ "m_hits", "classgridfire_1_1trigger_1_1_not_trigger.html#a86404f57e0e0683fc56e0e49321e5e3b", null ],
+    [ "m_misses", "classgridfire_1_1trigger_1_1_not_trigger.html#aa1253080cd57cdf0be6780773ce6c73c", null ],
+    [ "m_resets", "classgridfire_1_1trigger_1_1_not_trigger.html#adb9c36fa46a30c28e68c59a7d3bd825d", null ],
+    [ "m_updates", "classgridfire_1_1trigger_1_1_not_trigger.html#ae4830ed152643770b0888b040475b000", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1trigger_1_1_not_trigger.png b/docs/html/classgridfire_1_1trigger_1_1_not_trigger.png
new file mode 100644
index 0000000000000000000000000000000000000000..b097618041ffc3bc7bbc5cfebc686ff43ec790be
GIT binary patch
literal 1784
zcmb`I`CF1%6vr{k)H0v&sVR#nebq9{8gdjhos5!~3e#LOt<k|$G(*KDt)`}pthCn+
zL8QnDw_Gx}%5c*1aRGDOav{lF!re$j5t-MPdFBu3{&4U4p8Lyr?)jYWr5z>OYia6g
zA`l2I5RY?0AXIR0d_!Fo-m?OH;^AY%(ZkLMlu9KWejJ^q#=qoR?AmsAU25Y;kw^sR
z&G@dF@SR4u6Y&@V)?b$S5@ss`q4p<;+vgmmGR7J?Ghn>(pqou*{e-gSbd%ufA^Z|b
z{2u*^`anjjVd1XH)FdZOCxUn{0BQo_9a|is^eZ?p6p1vb1Mx|KQ8h9()-y!`I#I?<
zpDB})3P_6eT5N~<ORR<DCeKs6islTyYadtG@X(%zMO!mJ-?my735;J-a%&z9F3j5y
zCatLQ?rAYyVfdsxxRNhCuGC${CK$hX+}2q}p6zhVi}7;vvh@zn@qmaug!x~dM1(Q(
zO$z7a<%0XHTO8u1YDuu(wkGl>T=T0^o^UE@dKQp?KH&LW|LOuv7w4R2f!Z#5IOLww
zFn$v|eCx^ZMCHMPn$YFEl((HPCSv<1A4+_|NaRe`&!g7MSS=&O52nsOrt>}?w|;W5
z+2jof-F%*L?14GsqI6-zOvOn-rDFJXEmaon5PLYV=Sc$=?TMoC+dsb3k%(hQfuS8E
zFV8Cbtx+Zp@1dJyi-2BIj={Thfjo@5(dD+HUfhGG0k_|Dx&z{yb!Y7%Kw-Q;h6C`M
zgV<1b?eFFKAasGn9hfhTX$yriV+^ZNAoRK0dgtlI_h%$*1&MYX0INZR`T>9dCC1l$
z?T;DaBGwk6QWayT_eVUNU8pY71D42S7AxZro8T1lsJaLMmRM-e5JXreCj3y@k4~UF
z5%v+bRbB_cOF*T;VrBm?HFG<qu8h>l2G(>eJeE6vuc*wE&)wVE?;|?OX_*_NTJBQc
z^j2L6W0gfF%QSeS?H@N^-_LW@c_fJZOL_H9&ECnY|KXzl1(()ETv+~bRAp_K>ueug
zY8GB7Jm(w_VuO{U$d%u~@wJA*nN5%>lylR;2_C1WXDF=wR_mkf;y!a|!=>`5K=WQh
zC{(4txfHcctsNER!9Ji(pcza*;%M;%788X>;;qR3S;8D$wL~H^_s+&egtlfcFI8go
zi+bn<1{o0pMl|xv2Q@usitoLK#({B1(%WcFOKwMdVjUq*yC}CV#BkKx=QP%~)an?G
z6vDQ2vew3ry82)P#vX?9(qp>cl+@JjrQ8!rGGz4D@_^JZn^H?8^U+kGLnBvGv@bo9
zv!Ys|I`#Z`zQd63%C@CmCEK&huO&*yvX1xh#m{ZsY8~6&3dKDW_ZG1-1;m%9CK^jd
zKq#{;U5W!44?1lO#Mi#%0PTU$3-Y$WWc)unKJ=!MI}!nKRnCA3+%^8{?=$^<$Uoiv
z)>So;>Cp1ch$sjA(#a`_&RUfdS8xb4`ucCHtM=oUp4HJ*flUEnv}JV_2umdLhst?X
zWGczyGRY%lrjVYt%+D`GgXZT4PeEE*VuHWlAOJAZu+dPtVx}qBLu!QCp060F3d-Ap
zoowlw!}Pq=HNTsrYUQ<)T?PZD4ZSv=(g|O0?pQw(MWBVvO3-5$@9R^v=gnxIe8uef
zBvE9Bv}~khciRzvO83*0I4XP8ESE0-du<ov0^WF#EN`C@`u<AR8mD^QemI_$=8>9F
z6VmQ#-c41{Td>Iw^EdJx@e*VY_ZMA_W#a3Pv1(mDKSkL^-XNWqlDzRI*&%C!Wz>Te
zL32p7XVzD1iqLzueJ~3nJEvZmEGPO@c%3|CJ=PX&wJwS7>2GP95^h9^H?9^OdxNbM
z==QoTx|7!PRCkoNPO`gn<SDYdWVarLgKWqSDr3k8db-mY#h>=|QCAG@o!XsEY1ugx
z8$<<4QLL^-iwfE>q!7avMbG2fDswGa=;OPJ`*ew2<{5!BbFO6J1j^pUSHcbBb^H10
zhexc&6l-{wh?IG0omS&g9Htn{7;9+^g4}k<Y{`Doj5ye;OxwD4W0-?3D;Am<X_bS4
zSmt7%RIlJL7^5xCjg26F4<-zW<Ts|r0y`TXFKu{iQZTFiHW>emaLd^O{-Y4!0U|En
I?$qUf0i%XzQ2+n{

literal 0
HcmV?d00001

diff --git a/docs/html/classgridfire_1_1trigger_1_1_or_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1_or_trigger-members.html
new file mode 100644
index 00000000..f5b5d3c2
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1_or_trigger-members.html
@@ -0,0 +1,134 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1_or_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt; Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#ac8be54d91e77ed16ae3cca2417d82e0a">check</a>(const TriggerContextStruct &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#accb56630df2f57400467d315c61dede6">describe</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a6da04b5b15371f7087be03bb337dbdd6">m_A</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a30dec370b61a5f0562956394b89e8f89">m_B</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a35d519d5266c68b696b779b275574ebf">m_hits</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b">m_misses</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#adc6f560d9199455ba98d85eadfe02847">m_resets</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#af595a5daab0f5b3ffc450c6de6737517">m_updates</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a062af4f567dc48c088f1fcfb64cc79ec">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a0b3a7f45604dbb27e832d9559dd20997">numMisses</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#afc7d3eae8306ee383d76997ac3803327">numTriggers</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#aaf4f8a090bdd10eeba0b7849fa8ed888">OrTrigger</a>(std::unique_ptr&lt; Trigger&lt; TriggerContextStruct &gt; &gt; A, std::unique_ptr&lt; Trigger&lt; TriggerContextStruct &gt; &gt; B)</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#ab42043e55c81bac5d3f981bc139579de">reset</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a775dac97d109c5fcd5c0287ca98f308c">update</a>(const TriggerContextStruct &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a7bca0da16353f4b04a2f40fb29c07922">why</a>(const TriggerContextStruct &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#afe30f95de39c1375557d032b8a8111f9">~OrTrigger</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1_or_trigger.html b/docs/html/classgridfire_1_1trigger_1_1_or_trigger.html
new file mode 100644
index 00000000..bee700f1
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1_or_trigger.html
@@ -0,0 +1,657 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt; Class Template Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1_or_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1trigger_1_1_or_trigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt; Class Template Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Logical disjunction of two triggers with short-circuit evaluation.  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;trigger_logical.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="classgridfire_1_1trigger_1_1_or_trigger.png" usemap="#gridfire::trigger::OrTrigger_3C_20TriggerContextStruct_20_3E_map" alt=""/>
+  <map id="gridfire::trigger::OrTrigger_3C_20TriggerContextStruct_20_3E_map" name="gridfire::trigger::OrTrigger_3C_20TriggerContextStruct_20_3E_map">
+<area href="classgridfire_1_1trigger_1_1_logical_trigger.html" alt="gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt;" shape="rect" coords="0,56,324,80"/>
+<area href="classgridfire_1_1trigger_1_1_trigger.html" title="Generic trigger interface for signaling events/conditions during integration." alt="gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;" shape="rect" coords="0,0,324,24"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:aaf4f8a090bdd10eeba0b7849fa8ed888" id="r_aaf4f8a090bdd10eeba0b7849fa8ed888"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aaf4f8a090bdd10eeba0b7849fa8ed888">OrTrigger</a> (std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt; A, std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt; B)</td></tr>
+<tr class="separator:aaf4f8a090bdd10eeba0b7849fa8ed888"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afe30f95de39c1375557d032b8a8111f9" id="r_afe30f95de39c1375557d032b8a8111f9"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afe30f95de39c1375557d032b8a8111f9">~OrTrigger</a> () override=default</td></tr>
+<tr class="separator:afe30f95de39c1375557d032b8a8111f9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac8be54d91e77ed16ae3cca2417d82e0a" id="r_ac8be54d91e77ed16ae3cca2417d82e0a"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac8be54d91e77ed16ae3cca2417d82e0a">check</a> (const TriggerContextStruct &amp;ctx) const override</td></tr>
+<tr class="memdesc:ac8be54d91e77ed16ae3cca2417d82e0a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the trigger condition against the provided context.  <br /></td></tr>
+<tr class="separator:ac8be54d91e77ed16ae3cca2417d82e0a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a775dac97d109c5fcd5c0287ca98f308c" id="r_a775dac97d109c5fcd5c0287ca98f308c"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a775dac97d109c5fcd5c0287ca98f308c">update</a> (const TriggerContextStruct &amp;ctx) override</td></tr>
+<tr class="memdesc:a775dac97d109c5fcd5c0287ca98f308c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update any internal state with the given context (e.g., counters, windows).  <br /></td></tr>
+<tr class="separator:a775dac97d109c5fcd5c0287ca98f308c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab42043e55c81bac5d3f981bc139579de" id="r_ab42043e55c81bac5d3f981bc139579de"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab42043e55c81bac5d3f981bc139579de">reset</a> () override</td></tr>
+<tr class="memdesc:ab42043e55c81bac5d3f981bc139579de"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset internal state and diagnostics counters.  <br /></td></tr>
+<tr class="separator:ab42043e55c81bac5d3f981bc139579de"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a062af4f567dc48c088f1fcfb64cc79ec" id="r_a062af4f567dc48c088f1fcfb64cc79ec"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a062af4f567dc48c088f1fcfb64cc79ec">name</a> () const override</td></tr>
+<tr class="memdesc:a062af4f567dc48c088f1fcfb64cc79ec"><td class="mdescLeft">&#160;</td><td class="mdescRight">Short, stable name for this trigger (suitable for logs/UI).  <br /></td></tr>
+<tr class="separator:a062af4f567dc48c088f1fcfb64cc79ec"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7bca0da16353f4b04a2f40fb29c07922" id="r_a7bca0da16353f4b04a2f40fb29c07922"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7bca0da16353f4b04a2f40fb29c07922">why</a> (const TriggerContextStruct &amp;ctx) const override</td></tr>
+<tr class="memdesc:a7bca0da16353f4b04a2f40fb29c07922"><td class="mdescLeft">&#160;</td><td class="mdescRight">Explain why the last evaluation would be true/false in a structured way.  <br /></td></tr>
+<tr class="separator:a7bca0da16353f4b04a2f40fb29c07922"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:accb56630df2f57400467d315c61dede6" id="r_accb56630df2f57400467d315c61dede6"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#accb56630df2f57400467d315c61dede6">describe</a> () const override</td></tr>
+<tr class="memdesc:accb56630df2f57400467d315c61dede6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable description of this trigger's logic.  <br /></td></tr>
+<tr class="separator:accb56630df2f57400467d315c61dede6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afc7d3eae8306ee383d76997ac3803327" id="r_afc7d3eae8306ee383d76997ac3803327"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afc7d3eae8306ee383d76997ac3803327">numTriggers</a> () const override</td></tr>
+<tr class="memdesc:afc7d3eae8306ee383d76997ac3803327"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to true since last reset.  <br /></td></tr>
+<tr class="separator:afc7d3eae8306ee383d76997ac3803327"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0b3a7f45604dbb27e832d9559dd20997" id="r_a0b3a7f45604dbb27e832d9559dd20997"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0b3a7f45604dbb27e832d9559dd20997">numMisses</a> () const override</td></tr>
+<tr class="memdesc:a0b3a7f45604dbb27e832d9559dd20997"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to false since last reset.  <br /></td></tr>
+<tr class="separator:a0b3a7f45604dbb27e832d9559dd20997"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1trigger_1_1_trigger"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1trigger_1_1_trigger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a6da04b5b15371f7087be03bb337dbdd6" id="r_a6da04b5b15371f7087be03bb337dbdd6"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6da04b5b15371f7087be03bb337dbdd6">m_A</a></td></tr>
+<tr class="separator:a6da04b5b15371f7087be03bb337dbdd6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a30dec370b61a5f0562956394b89e8f89" id="r_a30dec370b61a5f0562956394b89e8f89"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a30dec370b61a5f0562956394b89e8f89">m_B</a></td></tr>
+<tr class="separator:a30dec370b61a5f0562956394b89e8f89"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a35d519d5266c68b696b779b275574ebf" id="r_a35d519d5266c68b696b779b275574ebf"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a35d519d5266c68b696b779b275574ebf">m_hits</a> = 0</td></tr>
+<tr class="separator:a35d519d5266c68b696b779b275574ebf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b" id="r_ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b">m_misses</a> = 0</td></tr>
+<tr class="separator:ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af595a5daab0f5b3ffc450c6de6737517" id="r_af595a5daab0f5b3ffc450c6de6737517"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af595a5daab0f5b3ffc450c6de6737517">m_updates</a> = 0</td></tr>
+<tr class="separator:af595a5daab0f5b3ffc450c6de6737517"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adc6f560d9199455ba98d85eadfe02847" id="r_adc6f560d9199455ba98d85eadfe02847"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#adc6f560d9199455ba98d85eadfe02847">m_resets</a> = 0</td></tr>
+<tr class="separator:adc6f560d9199455ba98d85eadfe02847"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><div class="compoundTemplParams">template&lt;typename TriggerContextStruct&gt;<br />
+class gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</div><p>Logical disjunction of two triggers with short-circuit evaluation. </p>
+<p>check(ctx) returns A.check(ctx) || B.check(ctx). why(ctx) returns early when A is true. update(ctx) calls <a class="el" href="#a775dac97d109c5fcd5c0287ca98f308c" title="Update any internal state with the given context (e.g., counters, windows).">update()</a> on both A and B. Counters behave as in <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html" title="Logical conjunction of two triggers with short-circuit evaluation.">AndTrigger</a>. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="aaf4f8a090bdd10eeba0b7849fa8ed888" name="aaf4f8a090bdd10eeba0b7849fa8ed888"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaf4f8a090bdd10eeba0b7849fa8ed888">&#9670;&#160;</a></span>OrTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::OrTrigger </td>
+          <td>(</td>
+          <td class="paramtype">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;</td>          <td class="paramname"><span class="paramname"><em>A</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;</td>          <td class="paramname"><span class="paramname"><em>B</em></span>&#160;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="afe30f95de39c1375557d032b8a8111f9" name="afe30f95de39c1375557d032b8a8111f9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afe30f95de39c1375557d032b8a8111f9">&#9670;&#160;</a></span>~OrTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::~<a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">OrTrigger</a> </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel default">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ac8be54d91e77ed16ae3cca2417d82e0a" name="ac8be54d91e77ed16ae3cca2417d82e0a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac8be54d91e77ed16ae3cca2417d82e0a">&#9670;&#160;</a></span>check()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::check </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate the trigger condition against the provided context. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot (immutable view) used to evaluate the condition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if the condition is satisfied; false otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="accb56630df2f57400467d315c61dede6" name="accb56630df2f57400467d315c61dede6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#accb56630df2f57400467d315c61dede6">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::describe </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Human-readable description of this trigger's logic. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a062af4f567dc48c088f1fcfb64cc79ec" name="a062af4f567dc48c088f1fcfb64cc79ec"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a062af4f567dc48c088f1fcfb64cc79ec">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::name </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Short, stable name for this trigger (suitable for logs/UI). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a0b3a7f45604dbb27e832d9559dd20997" name="a0b3a7f45604dbb27e832d9559dd20997"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0b3a7f45604dbb27e832d9559dd20997">&#9670;&#160;</a></span>numMisses()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::numMisses </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to false since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="afc7d3eae8306ee383d76997ac3803327" name="afc7d3eae8306ee383d76997ac3803327"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afc7d3eae8306ee383d76997ac3803327">&#9670;&#160;</a></span>numTriggers()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::numTriggers </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to true since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ab42043e55c81bac5d3f981bc139579de" name="ab42043e55c81bac5d3f981bc139579de"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab42043e55c81bac5d3f981bc139579de">&#9670;&#160;</a></span>reset()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::reset </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reset internal state and diagnostics counters. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a775dac97d109c5fcd5c0287ca98f308c" name="a775dac97d109c5fcd5c0287ca98f308c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a775dac97d109c5fcd5c0287ca98f308c">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::update </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Update any internal state with the given context (e.g., counters, windows). </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a7bca0da16353f4b04a2f40fb29c07922" name="a7bca0da16353f4b04a2f40fb29c07922"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7bca0da16353f4b04a2f40fb29c07922">&#9670;&#160;</a></span>why()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::why </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Explain why the last evaluation would be true/false in a structured way. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot for the explanation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> tree with a boolean value and per-cause details. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a6da04b5b15371f7087be03bb337dbdd6" name="a6da04b5b15371f7087be03bb337dbdd6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6da04b5b15371f7087be03bb337dbdd6">&#9670;&#160;</a></span>m_A</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt;<a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt;TriggerContextStruct&gt; &gt; <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::m_A</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a30dec370b61a5f0562956394b89e8f89" name="a30dec370b61a5f0562956394b89e8f89"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a30dec370b61a5f0562956394b89e8f89">&#9670;&#160;</a></span>m_B</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt;<a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt;TriggerContextStruct&gt; &gt; <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::m_B</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a35d519d5266c68b696b779b275574ebf" name="a35d519d5266c68b696b779b275574ebf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a35d519d5266c68b696b779b275574ebf">&#9670;&#160;</a></span>m_hits</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::m_hits = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b" name="ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b">&#9670;&#160;</a></span>m_misses</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::m_misses = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="adc6f560d9199455ba98d85eadfe02847" name="adc6f560d9199455ba98d85eadfe02847"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adc6f560d9199455ba98d85eadfe02847">&#9670;&#160;</a></span>m_resets</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::m_resets = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="af595a5daab0f5b3ffc450c6de6737517" name="af595a5daab0f5b3ffc450c6de6737517"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af595a5daab0f5b3ffc450c6de6737517">&#9670;&#160;</a></span>m_updates</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::m_updates = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/trigger/<a class="el" href="trigger__logical_8h.html">trigger_logical.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li><li class="navelem"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">OrTrigger</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1_or_trigger.js b/docs/html/classgridfire_1_1trigger_1_1_or_trigger.js
new file mode 100644
index 00000000..9d055d1a
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1_or_trigger.js
@@ -0,0 +1,19 @@
+var classgridfire_1_1trigger_1_1_or_trigger =
+[
+    [ "OrTrigger", "classgridfire_1_1trigger_1_1_or_trigger.html#aaf4f8a090bdd10eeba0b7849fa8ed888", null ],
+    [ "~OrTrigger", "classgridfire_1_1trigger_1_1_or_trigger.html#afe30f95de39c1375557d032b8a8111f9", null ],
+    [ "check", "classgridfire_1_1trigger_1_1_or_trigger.html#ac8be54d91e77ed16ae3cca2417d82e0a", null ],
+    [ "describe", "classgridfire_1_1trigger_1_1_or_trigger.html#accb56630df2f57400467d315c61dede6", null ],
+    [ "name", "classgridfire_1_1trigger_1_1_or_trigger.html#a062af4f567dc48c088f1fcfb64cc79ec", null ],
+    [ "numMisses", "classgridfire_1_1trigger_1_1_or_trigger.html#a0b3a7f45604dbb27e832d9559dd20997", null ],
+    [ "numTriggers", "classgridfire_1_1trigger_1_1_or_trigger.html#afc7d3eae8306ee383d76997ac3803327", null ],
+    [ "reset", "classgridfire_1_1trigger_1_1_or_trigger.html#ab42043e55c81bac5d3f981bc139579de", null ],
+    [ "update", "classgridfire_1_1trigger_1_1_or_trigger.html#a775dac97d109c5fcd5c0287ca98f308c", null ],
+    [ "why", "classgridfire_1_1trigger_1_1_or_trigger.html#a7bca0da16353f4b04a2f40fb29c07922", null ],
+    [ "m_A", "classgridfire_1_1trigger_1_1_or_trigger.html#a6da04b5b15371f7087be03bb337dbdd6", null ],
+    [ "m_B", "classgridfire_1_1trigger_1_1_or_trigger.html#a30dec370b61a5f0562956394b89e8f89", null ],
+    [ "m_hits", "classgridfire_1_1trigger_1_1_or_trigger.html#a35d519d5266c68b696b779b275574ebf", null ],
+    [ "m_misses", "classgridfire_1_1trigger_1_1_or_trigger.html#ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b", null ],
+    [ "m_resets", "classgridfire_1_1trigger_1_1_or_trigger.html#adc6f560d9199455ba98d85eadfe02847", null ],
+    [ "m_updates", "classgridfire_1_1trigger_1_1_or_trigger.html#af595a5daab0f5b3ffc450c6de6737517", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1trigger_1_1_or_trigger.png b/docs/html/classgridfire_1_1trigger_1_1_or_trigger.png
new file mode 100644
index 0000000000000000000000000000000000000000..a7b90a7b9f2af839a244cad5d16c6cf5ccb760d7
GIT binary patch
literal 1776
zcmb`IYfzF|9LC?$G%IbwoyziBugjXXy0OlB%}p(NnS>Ttx7JH8W0WG438HD3nYoN*
z>?>-h=u~K4F}Fn2l1dw=L|ij1BEw69nFyw3hRMF|&d%)a=gx<7{?BvHhcoB-&Hr%s
z<3p`iZCV8YfHi~-Ap*d%5TyQfr5Q3;#ZfLI%jW(2$a_pC6H-o0y=7gzcg@?=?fAwb
z`NZ(>Fyedlgo}_pD<%<70ucSz_-=X0V*s#7gF<$bQ<mw3I>uC;&EB6JMGxmQ?jP~R
zoW001A9akA!L@aj5PkV-vkb_s!nuN977UBNhs#hX*9Q=m529UufJ@JYKqq$YNOW(e
zcN5?mcbWYXiP$3P?M--pl4xZ=*T7k_$SWz)DdSz+p9RoQzAJfsw-(Y%gALzPY!)+c
zi-XVg`rGDeQjwZd_D-n}s#P^NS45P{Dm#kcnuhe(Q$tN}XdZ)+Pr{zeZ^()-6qyyF
z)Yhk37lh(1*B8=cd6%=!*Wei)-E@~~In6F);C{QTW9ISORP-#K5|&1r=;+0KxYD}%
zn1!c+$vaT%K3(Ip>HN)C`lh`NohK~=i@cw<H>C3o;@KqVCsY#IA-VL--B+xNnYG&z
zzu^47U6Wg5zjiGwc5gh?he4exIMB<G86!QkeH_-vnE#>_{o+d&<HLAlUVUaKgT~Zz
z$C)qK@K_;>l9GPH(WbENI5glT<g*1-F8f*%hmm)+vN6y{*tPXHk)6fnTu|7!aT*JY
z0uRR%_#&@X9SIg6Si=UPN99S)rRB*D2k|hoha%ky!Ar%e@$FD1D75|m`@exN5plb5
zZUGj<PFhQ6AO(*#H_Xi1u3r{;HUx0;$oXa6onWl_aobhPkh}o2%ep%dB2lQ%Di<xm
zN<NWC#PzyBL}!R##f4vjAP&yweFfozu7EyvxaSY)syF$f$%h^}CO$c;Xkj2%H;WmX
zMl)Qh&7+wwF%#@zY0F(zEiOH~Jeiiv>%Xk8$_{_hwsYwo!b`gIOhl4QHjhg0#d3_P
z&(KY)>lteN-2GzHOk6FekzhnKe;-OFH$$#FG7JId{syOK<0o)lxVD>23m@3LJu$QM
z9EV^_yTd`Xb2VH|;i>0M5scMP1@Q2wF^_Dv+2)qGx5l!mv-sWMA35bm?AcGnU0Gh=
z4lqd8`H&?yEHs%tU~kR8Y1W+~#@2nON#f>2E#ODdBjJ>|=7|0O#^|l?0mW64^Hlkg
zZJWF!@p|boRaA9nYct!Sx(p54xHp#F<d9mT6<6sKk)ygY@4o3o!mY5$=X2dH_7P^>
zp}`ahy0AZ0?VRV=#~qo;Oo`l~y*9h+9QBOiSphk!A4>I$FHB+kYPA~g_)TrT!Y&6s
zf|W5F6ndJ3P00ZeJjd@S`wF5lRoB3%f4rBMqZI_%vpN*i8oT62)18FD2fJ^Sy1Ma1
zUY~;cPjb;H63z|lR?!74jx7S_K(7@S*u~-8+j2UWw{m!F+;jW#l$Bh75#(|@A2C31
zxi@kGAGGDOO4I31x=IqGlIVOAsMJh>k`#1BAjsz(rD{O1Sb$uaO2tpRa!jT)m1HrN
zI#6&3-_xa!3pd>kR46n!;>X5d_G|4i1h0raHwxab^1Be}reP-(7>>H^GdfzV1vPg9
z3*OhasMTp!?b>a!kN&#;q3rPHWAm+)p^}C6OL9gitAzaMgz$FS&m7(T;<kbFu^Hb~
zQ8DgM4vhNE_BZGkzsT%S8(C`{V)@ky54ICqIWFOmD_hQ2PbR8Aju<9C_~)l?YplHO
zH8-NQ%fi*=PJZ2HcPIAIZc4paTB|wgX^<GlSVl4>X;*39#PvfS&~{~%Rtt+kO_lGI
z_lm53ny8P&y=us38KkK0nd|$xx($kLe|4q}2uuo2+b5W;<C!seu4PA@<~vm)MVPF#
zyU~mHlz!oL8pTIAUq2=d6>fBNDi}!Do{Djv@mI-fXufV4bq7a>UX_-Yj8(-=DPQ?d
zw+fVNvV@)T1UOXLPAC?nN?+La$Ok7R1k8;Uj)#rA;;5Q&rca=baDyY47pCxaMiG+8
z?05oo{UyN=3e_V=nhgencIlJLA?&x9q&KjXu3Dd<k_2cndZM8pl?NSdkiQ9l_TWRr
IK{03k1T~do`~Uy|

literal 0
HcmV?d00001

diff --git a/docs/html/classgridfire_1_1trigger_1_1_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1_trigger-members.html
new file mode 100644
index 00000000..348c6a70
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1_trigger-members.html
@@ -0,0 +1,126 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt; Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88">check</a>(const TriggerContextStruct &amp;ctx) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f">describe</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7">name</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7">numMisses</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">numTriggers</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d">reset</a>()=0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc">update</a>(const TriggerContextStruct &amp;ctx)=0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea">why</a>(const TriggerContextStruct &amp;ctx) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1_trigger.html b/docs/html/classgridfire_1_1trigger_1_1_trigger.html
new file mode 100644
index 00000000..33221723
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1_trigger.html
@@ -0,0 +1,487 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::trigger::Trigger&lt; TriggerContextStruct &gt; Class Template Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1trigger_1_1_trigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt; Class Template Reference<span class="mlabels"><span class="mlabel abstract">abstract</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Generic trigger interface for signaling events/conditions during integration.  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;trigger_abstract.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="classgridfire_1_1trigger_1_1_trigger.png" usemap="#gridfire::trigger::Trigger_3C_20TriggerContextStruct_20_3E_map" alt=""/>
+  <map id="gridfire::trigger::Trigger_3C_20TriggerContextStruct_20_3E_map" name="gridfire::trigger::Trigger_3C_20TriggerContextStruct_20_3E_map">
+<area href="classgridfire_1_1trigger_1_1_logical_trigger.html" alt="gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt;" shape="rect" coords="519,56,855,80"/>
+<area href="classgridfire_1_1trigger_1_1_and_trigger.html" title="Logical conjunction of two triggers with short-circuit evaluation." alt="gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;" shape="rect" coords="0,112,336,136"/>
+<area href="classgridfire_1_1trigger_1_1_every_nth_trigger.html" title="Pass-through trigger that fires every Nth time its child trigger is true." alt="gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;" shape="rect" coords="346,112,682,136"/>
+<area href="classgridfire_1_1trigger_1_1_not_trigger.html" title="Logical negation of a trigger." alt="gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;" shape="rect" coords="692,112,1028,136"/>
+<area href="classgridfire_1_1trigger_1_1_or_trigger.html" title="Logical disjunction of two triggers with short-circuit evaluation." alt="gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;" shape="rect" coords="1038,112,1374,136"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1579ffb1c841cda4e67990b42d400d88" id="r_a1579ffb1c841cda4e67990b42d400d88"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1579ffb1c841cda4e67990b42d400d88">check</a> (const TriggerContextStruct &amp;ctx) const =0</td></tr>
+<tr class="memdesc:a1579ffb1c841cda4e67990b42d400d88"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the trigger condition against the provided context.  <br /></td></tr>
+<tr class="separator:a1579ffb1c841cda4e67990b42d400d88"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a048899795704f68668960454d118a6fc" id="r_a048899795704f68668960454d118a6fc"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a048899795704f68668960454d118a6fc">update</a> (const TriggerContextStruct &amp;ctx)=0</td></tr>
+<tr class="memdesc:a048899795704f68668960454d118a6fc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update any internal state with the given context (e.g., counters, windows).  <br /></td></tr>
+<tr class="separator:a048899795704f68668960454d118a6fc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af652af761675736419b961b6946c728d" id="r_af652af761675736419b961b6946c728d"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af652af761675736419b961b6946c728d">reset</a> ()=0</td></tr>
+<tr class="memdesc:af652af761675736419b961b6946c728d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset internal state and diagnostics counters.  <br /></td></tr>
+<tr class="separator:af652af761675736419b961b6946c728d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3e5b017147f22ca0733733cd39e334b7" id="r_a3e5b017147f22ca0733733cd39e334b7"><td class="memItemLeft" align="right" valign="top">virtual std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3e5b017147f22ca0733733cd39e334b7">name</a> () const =0</td></tr>
+<tr class="memdesc:a3e5b017147f22ca0733733cd39e334b7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Short, stable name for this trigger (suitable for logs/UI).  <br /></td></tr>
+<tr class="separator:a3e5b017147f22ca0733733cd39e334b7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a402cdd062e9479abbcca02e3d94e528f" id="r_a402cdd062e9479abbcca02e3d94e528f"><td class="memItemLeft" align="right" valign="top">virtual std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a402cdd062e9479abbcca02e3d94e528f">describe</a> () const =0</td></tr>
+<tr class="memdesc:a402cdd062e9479abbcca02e3d94e528f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable description of this trigger's logic.  <br /></td></tr>
+<tr class="separator:a402cdd062e9479abbcca02e3d94e528f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9f020d828ca36a601b780566cc3377ea" id="r_a9f020d828ca36a601b780566cc3377ea"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9f020d828ca36a601b780566cc3377ea">why</a> (const TriggerContextStruct &amp;ctx) const =0</td></tr>
+<tr class="memdesc:a9f020d828ca36a601b780566cc3377ea"><td class="mdescLeft">&#160;</td><td class="mdescRight">Explain why the last evaluation would be true/false in a structured way.  <br /></td></tr>
+<tr class="separator:a9f020d828ca36a601b780566cc3377ea"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4ea3abfb76a09c4f55ad05d73a2cf12d" id="r_a4ea3abfb76a09c4f55ad05d73a2cf12d"><td class="memItemLeft" align="right" valign="top">virtual size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4ea3abfb76a09c4f55ad05d73a2cf12d">numTriggers</a> () const =0</td></tr>
+<tr class="memdesc:a4ea3abfb76a09c4f55ad05d73a2cf12d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to true since last reset.  <br /></td></tr>
+<tr class="separator:a4ea3abfb76a09c4f55ad05d73a2cf12d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a81848e5af844795d879b6d885a2701d7" id="r_a81848e5af844795d879b6d885a2701d7"><td class="memItemLeft" align="right" valign="top">virtual size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a81848e5af844795d879b6d885a2701d7">numMisses</a> () const =0</td></tr>
+<tr class="memdesc:a81848e5af844795d879b6d885a2701d7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to false since last reset.  <br /></td></tr>
+<tr class="separator:a81848e5af844795d879b6d885a2701d7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><div class="compoundTemplParams">template&lt;typename TriggerContextStruct&gt;<br />
+class gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</div><p>Generic trigger interface for signaling events/conditions during integration. </p>
+<p>A <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html" title="Generic trigger interface for signaling events/conditions during integration.">Trigger</a> encapsulates a condition evaluated against a user-defined context struct (TriggerContextStruct). The interface supports:</p><ul>
+<li><a class="el" href="#a1579ffb1c841cda4e67990b42d400d88" title="Evaluate the trigger condition against the provided context.">check()</a>: evaluate the current condition without mutating external state</li>
+<li><a class="el" href="#a048899795704f68668960454d118a6fc" title="Update any internal state with the given context (e.g., counters, windows).">update()</a>: feed the context to update internal state (counters, sliding windows, etc.)</li>
+<li><a class="el" href="#af652af761675736419b961b6946c728d" title="Reset internal state and diagnostics counters.">reset()</a>: clear internal state and counters</li>
+<li><a class="el" href="#a3e5b017147f22ca0733733cd39e334b7" title="Short, stable name for this trigger (suitable for logs/UI).">name()</a>/describe(): human-readable identification and textual description</li>
+<li><a class="el" href="#a9f020d828ca36a601b780566cc3377ea" title="Explain why the last evaluation would be true/false in a structured way.">why()</a>: structured explanation (tree of <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a>) of the last evaluation</li>
+<li><a class="el" href="#a4ea3abfb76a09c4f55ad05d73a2cf12d" title="Total number of times this trigger evaluated to true since last reset.">numTriggers()</a>/numMisses(): simple counters for diagnostics</li>
+</ul>
+<p>Logical compositions (AND/OR/NOT/EveryNth) are provided in <a class="el" href="trigger__logical_8h.html" title="Combinators for composing triggers with boolean logic (AND/OR/NOT/EveryNth).">trigger_logical.h</a> and implement this interface for any TriggerContextStruct.</p>
+<dl class="tparams"><dt>Template Parameters</dt><dd>
+  <table class="tparams">
+    <tr><td class="paramname">TriggerContextStruct</td><td>User-defined context passed to triggers (e.g., timestep info). </td></tr>
+  </table>
+  </dd>
+</dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a2c077ccbaf4de9f7068e50144391edda" name="a2c077ccbaf4de9f7068e50144391edda"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2c077ccbaf4de9f7068e50144391edda">&#9670;&#160;</a></span>~Trigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::~<a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a> </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel virtual">virtual</span><span class="mlabel default">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Virtual destructor for polymorphic use. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a1579ffb1c841cda4e67990b42d400d88" name="a1579ffb1c841cda4e67990b42d400d88"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1579ffb1c841cda4e67990b42d400d88">&#9670;&#160;</a></span>check()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::check </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate the trigger condition against the provided context. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot (immutable view) used to evaluate the condition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if the condition is satisfied; false otherwise. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#aaefdfa86856f9f7839b6a7fdffa4a579">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69fbb099f8d13d39602f58fa8aa8e7f2">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#ae453a72df20fdd416443ef7867f86b92">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#ac8be54d91e77ed16ae3cca2417d82e0a">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3855b15459217383647ecdf12bc35775">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a50df7fefee167390522aa258fa6ee960">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, and <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a04598611b0807cad395bdd2fbc41a6c2">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>.</p>
+
+</div>
+</div>
+<a id="a402cdd062e9479abbcca02e3d94e528f" name="a402cdd062e9479abbcca02e3d94e528f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a402cdd062e9479abbcca02e3d94e528f">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::string <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::describe </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Human-readable description of this trigger's logic. </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a2dcd635c6bdbcfe517adca6e2bd5c408">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#aab88715f3c94437ca7f3fcb1698c69de">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#ad8166350329db3e1f50954afbb311a35">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#accb56630df2f57400467d315c61dede6">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#ad0dd92f9da6c291c3bd57c0983940035">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a0f412b8f788ab7990e353d62ab7d9a16">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, and <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a8ba5a942bb61347851030d1eb6bbaa74">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>.</p>
+
+</div>
+</div>
+<a id="a3e5b017147f22ca0733733cd39e334b7" name="a3e5b017147f22ca0733733cd39e334b7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3e5b017147f22ca0733733cd39e334b7">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::string <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::name </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Short, stable name for this trigger (suitable for logs/UI). </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#ab78539e5cd88194ab9e98434793eae3f">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a4a834d24286f9204995bf78fb69f35dc">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#acc3bd2938f7746997fb1d255681d8b20">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a062af4f567dc48c088f1fcfb64cc79ec">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a594893c029f044be3119118808470f7a">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a87fc9fe6bd8762f148c858452ec30043">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, and <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a290e5643eea08726d2fd44a1cd5617d0">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>.</p>
+
+</div>
+</div>
+<a id="a81848e5af844795d879b6d885a2701d7" name="a81848e5af844795d879b6d885a2701d7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a81848e5af844795d879b6d885a2701d7">&#9670;&#160;</a></span>numMisses()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual size_t <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::numMisses </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to false since last reset. </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#addfd61f8cb234881f535fb8f4d618d74">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae7776f4a526db3245e64a74a3b0172d3">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a2f9b0d6a6ac54f6371c5a208c06826ea">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a0b3a7f45604dbb27e832d9559dd20997">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0e1ad148f9f3232992a4b16e440c249a">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a273eb8a3e80d1235d2b3f252e55c5b50">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, and <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a94bb1de08a5ff55e1874f595f8c8965c">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>.</p>
+
+</div>
+</div>
+<a id="a4ea3abfb76a09c4f55ad05d73a2cf12d" name="a4ea3abfb76a09c4f55ad05d73a2cf12d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4ea3abfb76a09c4f55ad05d73a2cf12d">&#9670;&#160;</a></span>numTriggers()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual size_t <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::numTriggers </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to true since last reset. </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#afffb4281569963183d7db3ed1568eb3a">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a7e5568c9d7799b7f80ad0d3efe2cd143">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#ae2d27d72af9e1fbf711a58e4583b43a3">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#afc7d3eae8306ee383d76997ac3803327">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a32980aaf6d9c7632c024b4b74b1d9e70">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a34d285584ea96f71b99eefad8c738296">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, and <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad2a7c2567b100f97a024f65818ecefed">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>.</p>
+
+</div>
+</div>
+<a id="af652af761675736419b961b6946c728d" name="af652af761675736419b961b6946c728d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af652af761675736419b961b6946c728d">&#9670;&#160;</a></span>reset()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual void <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::reset </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reset internal state and diagnostics counters. </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a2436d8643911ade907e03fb29531ceaa">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#abf218d255bde157540b51cd6a54f6eb1">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#afe337517b77e5433d92ded3a64565141">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#ab42043e55c81bac5d3f981bc139579de">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a9b782cbf033ed2023da6b2d55dcefc4e">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#af4034fa431e6c88fd05c50cce31b2fa0">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, and <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a0fe6af73b11b820561bd4e5552890d4e">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>.</p>
+
+</div>
+</div>
+<a id="a048899795704f68668960454d118a6fc" name="a048899795704f68668960454d118a6fc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a048899795704f68668960454d118a6fc">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual void <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::update </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Update any internal state with the given context (e.g., counters, windows). </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a62f7dbbcf0554caa68e3d778580b3c1d">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0dd783afab7ef6005f0241f9de7b31f6">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a846432abf33c7602af0fbb5475c0ad32">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a775dac97d109c5fcd5c0287ca98f308c">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a179cb09a91d5c638d7a347137b208767">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a468bf58f66417493501c59d7a8aabc98">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, and <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#af6bff6a484e8729445c26620b489665d">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>.</p>
+
+</div>
+</div>
+<a id="a9f020d828ca36a601b780566cc3377ea" name="a9f020d828ca36a601b780566cc3377ea"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9f020d828ca36a601b780566cc3377ea">&#9670;&#160;</a></span>why()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::why </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Explain why the last evaluation would be true/false in a structured way. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot for the explanation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> tree with a boolean value and per-cause details. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a01033721e8f5d90483d65c904399cf96">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a3bf0d69122f801deca4b62db47262d9b">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#abfb3eb7befba646ce9f11f36a63750ae">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a7bca0da16353f4b04a2f40fb29c07922">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3af973e466ba62ebf1e41c608355e327">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a9dfab0b765d3a4c362cecd860d59f58a">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, and <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a22d8bc7aacbc388108225c26158e918c">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/trigger/<a class="el" href="trigger__abstract_8h.html">trigger_abstract.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li><li class="navelem"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1_trigger.js b/docs/html/classgridfire_1_1trigger_1_1_trigger.js
new file mode 100644
index 00000000..27b6fb39
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1_trigger.js
@@ -0,0 +1,12 @@
+var classgridfire_1_1trigger_1_1_trigger =
+[
+    [ "~Trigger", "classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda", null ],
+    [ "check", "classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88", null ],
+    [ "describe", "classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f", null ],
+    [ "name", "classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7", null ],
+    [ "numMisses", "classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7", null ],
+    [ "numTriggers", "classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d", null ],
+    [ "reset", "classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d", null ],
+    [ "update", "classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc", null ],
+    [ "why", "classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1trigger_1_1_trigger.png b/docs/html/classgridfire_1_1trigger_1_1_trigger.png
new file mode 100644
index 0000000000000000000000000000000000000000..1df731863101794b81062bec42782ffa0dbe0301
GIT binary patch
literal 3355
zcmd6qdpK148pnsOyAsvjyF{s-=!PQ3{Z1sLnrvZIa>=DZuG0)f*iJNi$0npnHnJv`
zw2@(EWS+9!wjHtDhith_jLQsW26NV$q31l$d7ksvInQ(EkM~{koAtiy_xruy&%1t;
zbl%~N%$B`dP$-m)t&Qac6lwz&zW!<RI@lgDM4f=0!ufNTtVALad^z@o7e=Zp)IE7L
zXirA-*x=wGJg(hx`8W8tZ$d9PTtva&#UHeE_D2+ITY;^m*`-LS$^OZZva@nlL-hrX
zpH{%d8mAr8hpt~eR$qGY#E!}R-r?`xd2BAlZBJw#RD_L=>0OjmcvCJ%Xv`(DaAw>s
zQqo_t$I3avXszeYo8_*uEI}e`A$teS{4PqUf}a%9S;=GHNw4ohfAD85EPGpmatCVZ
zQFdU)C$N3!q#KWDqL(1+LAs+WQd5gz+&n=z$r$J5PtOE#jAA4iYkWwQ;HMSKmJpn|
z$tB=Z;yYQc{<qd}CeypxH5K(kK^K}K_Ba7Q$KeUa`F=-?iKmX{JW=1TfQyQ*e6v(s
z(BST%6m5@x%sMFqBcMk9M^Gu*pDm=vSV<O;F{^v@^NG@SA-melpDAPqdkCHlKY#mx
z!O&20#GOugueAGA=BG)5Qpu?P2mUqzokNxruh2UQTiEQVb*qUS(f4@Pi+?U~YxWdZ
z|JMoMjwG7W%TOKG;n)=HLDRd$*YQ}!3YN{gQ2sH^lb_O=u1ze2a{aD^Ym6Gu)OQ3(
zCZfg_{I;|bT1dg2(^Jd58F;N7jnCN<_6GY5f<nZJXs<0nRqz~_YYJ9sW@ik98)}Wr
z%_jAv>-7J4y98oR^E_z|8>^4qx#yOL6ogZg{@w&^w!~xFj+DJ+RHj#lZZD+pR2-@m
z_-0Y8g;dYrcE$rfw`5L1g`W@2@w}3+8Ku5Wzp0InM@iLb(u_mh;KJ=x&#~JS`I=yL
zk+ncvw_2FAHs`mk&0*ti`nB03$FtyVQIHh=b9vhKMDjn_ZB?On(M`^$c|=y_K_uUN
zi->s^E@MpWzl$OXE2MMKhs3wpb9)wu4EYbo*Tdp_4$(QnmY>Aicw1L-`%sXsVuh6S
z`pt5KG0i&=f1q|RG9_3K<%*;kI0zm&yEd})+J6a_DV*sc@=$nB*8L#4xdTxntY}IS
zk{cy;c^6VtDe0Fg$RwoK|7ed?1rE$w4b(;^1n2f!&HaCqK&0mmg^_Dtv8hw*kQIDM
zF9D8S!UTQ=6!81XCkFEs&tjnGE1j5*H8=r?8L6+BKmoE8nTfKDmq5czpy=;7CLcHR
zW|WG~dS8cA3BhuUU`QQtJH;G)F2bJq#W1Yl!m^sW5r%eZLU=KXkhlrIZwn&A1GVO#
z@kWXcpBM2)IgYp$8rH<fL*`wfhDv^FyOpEG43EJ7WZ21#o7-2CzqLL`IOWyerPDY4
zd&11fY)5$r{XKh==Vpwy5wh)9S<PI$W_`Ea?&TD}92#T)LcXm2MqEpesztLy+)<Ad
zgQo+&dzEB{{cx(9E?vxc$8@b6@jl$YLvzR^d-tWAa2`)^=mF0Q6=-zDh=PiE`v`oF
z{oj5FvzD43U2dfk;SF@KA(lT43#7AoebX1f;Wy|juAST*Y$9;8oA!jm#cQQXbj+FH
z+47ff-pbvL&zUFsG>-df6{`gZtig-94h6GkL39>LB3}xWs;<%*^$c=7(_)7+csdsL
zf{q?4K1wDTIQ6y_DER-$!|$O-zl0jDI(xN_>_v9>j!yxk;SM9L-7;1PBRoq*5N=Lr
zvl||H5Ii^(2Rcsi1cW}gUJtU>=k`Fs?theKfl+SWgdJly8ZB7M+r)b9o8aYA0U$kS
z+)cN3R#=0c$|?YWFiA_!9Ov0to9t@KzdeL%;>-=a@y`N)PB9Qd?*d3)F?u4;ZnRD+
zoi$1ehE8KJ#bQY2TiielCKs4Ul%z?*QUIMbhOc1Czak6(s|4?&UB(1jOWIutoBCIn
zd!>w+LXqb~v6t!;_f{Cgk;r5Z37BG)AtPk>VF|n9X~WPe$W{F}nXMR#G~Caei8M?Y
zo{8L6KRols^+2tT@_ApgNAce)yC6=+_Ss*t%3IZJ$`GgU$TW9@?e|xHzJWL$<$LB^
zAD#I9Km+0eY^2wM;MlI8*Kb)3f?essZ@yg(g55QXokv!KU{{y$KYrl!sfKWOh$vkT
z7eMv^a$Wwf*3=pE9RO5ZrD7<6Ii}-#<!%6w7)!X=3Xh7fU^-%zUDwQ5IpAke2Hy)W
zWX;GSRko?{!(g^P3RpAGApnqRxLgeQnLS!FZ+Fu6zei32n2x{q7!ww~FdfO&Kuq3K
z(SZDjzfM!Oq}zN#x((<vzkIo0r*V9i0!-<}@Hsp}O=h>~_!#<dY4AsMe2j1XiYe%-
zaE<!WB#o^}d$`Vc-|d^*n4K?y@nCASe{uwFX>q&k=TqNSd|+2N(bbJ`zZGFk&|{T{
zOK*Nevjr9g^Mwt!eD3$=ul(x9_`n`1;_~oBo16e+0-jDamb-OUwXo^5kK;<yIDw9p
z^-$mIMQzNmPtEptYEvjr(tzrFrq@3y9uvHc8^vPmNt;~DUDDd;;x>3})CcDY?Gc(3
zxS0ygG=4E<zEEoB;J$R_;{$0aAag0xjm+kqt{W*L>Xn%NIp9GOwr$!6HB}4zjX`U9
z<Paj74-R}S-;yyCl-aJ@Jr~5O^s7FC;|hZQXy{5+omJgPGnH1$i$2L<yz<;VQO?)d
zpE2tkvV0l5cq^uM7ji@)7;qOCqqG|X%-~asd5*Q7w;rEt^mrsdzV$ls1!V0MZFGYp
znn54xyG16+;4`tVRz%UErQ-(SRoGrHgULmMs**M~zi|0jvt7p}FqM?PGEtwN{qBUn
zK>Z_fmJw-GZRNSVG-+eY<~`w_ORTD9D&UuuHqlbB&Xz{&t875>YtPDdHZ`#397s-M
zAEOx`WtjB;vEtqHAez@c5b@MyE~fXjPbc^K<3>la3!Dfza)$Qj1wkfORBwjMgT8ZO
z<U_69uX@MB`gO1ckYgjymF5s1Q)PImLru1>CJjCib+DsiEBS^>US-en?a?kR7Dg1`
zC4S$1efci}65f+i@i2s1Gag%CslgQ-G}CDJZ+d|nT|kF_38CpUhSLXN?cAnCm$zKc
zHl`-F%qx%EjRs|{aKSk$NFJRdq>20NihHvUF=zhd0(ia^$~aZRC<-p+FbQRtUaKfU
zcJYii>ESiUFkvQAYoWVA4vW?GYAdfty*Ids#1*`)iq3-)?Op&^>ZSvV0D+##UaxFd
zXUuYPy(@3`b3)#*RxDQKo=1PVQkCa!RpFiPXy1}np1$!D3NUbO_R^IqC)R#R#1mn$
zz`#j8aPi5r-8O^hh{^h?u6X=%ae#>~G>R`~4i(N(LstlQ$)vKDVhRx599Jw*aH7B3
zWpa4z@Xo~+cVUr1crG?Zt+%y>rvPIc4*&~4R!Gnf`Oom0ap4w!up7W&;EuLtenMUW
z%C6-Au)(%s&3y33bR^uMT*knSX3Y$evDGDPb11A|<y?gy6y`ogE$O|l+#BW&#Y(IQ
ZRR*cW|DYML6aE{6vbA!sEHS?t`%g$*bjJVy

literal 0
HcmV?d00001

diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger-members.html
new file mode 100644
index 00000000..5734d667
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger-members.html
@@ -0,0 +1,133 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::trigger::solver::CVODE::OffDiagonalTrigger Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3855b15459217383647ecdf12bc35775">check</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#ad0dd92f9da6c291c3bd57c0983940035">describe</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0d3b7c1d1057f442417c2f8c2a7177c5">m_hits</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#afbd9258d65370bbc965e799c82f0e1c0">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a14b1884a9014df33a1ec90dd3433c0b9">m_misses</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#acd55d04da377c8bf4af3ea2fcf2f1918">m_resets</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#aeac341c1e854d561a29aa39ad306d5d7">m_threshold</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a4885bdcc719a0f8c8394905893739b96">m_updates</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a594893c029f044be3119118808470f7a">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0e1ad148f9f3232992a4b16e440c249a">numMisses</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a32980aaf6d9c7632c024b4b74b1d9e70">numTriggers</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a6dc334b85ffb822880c6740dc457ea52">OffDiagonalTrigger</a>(double threshold)</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a9b782cbf033ed2023da6b2d55dcefc4e">reset</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a179cb09a91d5c638d7a347137b208767">update</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3af973e466ba62ebf1e41c608355e327">why</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html
new file mode 100644
index 00000000..c170caef
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html
@@ -0,0 +1,635 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::trigger::solver::CVODE::OffDiagonalTrigger Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::solver::CVODE::OffDiagonalTrigger Class Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Triggers when any off-diagonal Jacobian entry magnitude exceeds a threshold.  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;engine_partitioning_trigger.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::solver::CVODE::OffDiagonalTrigger:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.png" usemap="#gridfire::trigger::solver::CVODE::OffDiagonalTrigger_map" alt=""/>
+  <map id="gridfire::trigger::solver::CVODE::OffDiagonalTrigger_map" name="gridfire::trigger::solver::CVODE::OffDiagonalTrigger_map">
+<area href="classgridfire_1_1trigger_1_1_trigger.html" alt="gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;" shape="rect" coords="0,0,481,24"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a6dc334b85ffb822880c6740dc457ea52" id="r_a6dc334b85ffb822880c6740dc457ea52"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6dc334b85ffb822880c6740dc457ea52">OffDiagonalTrigger</a> (double threshold)</td></tr>
+<tr class="memdesc:a6dc334b85ffb822880c6740dc457ea52"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct with a non-negative magnitude threshold.  <br /></td></tr>
+<tr class="separator:a6dc334b85ffb822880c6740dc457ea52"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3855b15459217383647ecdf12bc35775" id="r_a3855b15459217383647ecdf12bc35775"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3855b15459217383647ecdf12bc35775">check</a> (const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) const override</td></tr>
+<tr class="memdesc:a3855b15459217383647ecdf12bc35775"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if any off-diagonal Jacobian entry exceeds the threshold.  <br /></td></tr>
+<tr class="separator:a3855b15459217383647ecdf12bc35775"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a179cb09a91d5c638d7a347137b208767" id="r_a179cb09a91d5c638d7a347137b208767"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a179cb09a91d5c638d7a347137b208767">update</a> (const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) override</td></tr>
+<tr class="memdesc:a179cb09a91d5c638d7a347137b208767"><td class="mdescLeft">&#160;</td><td class="mdescRight">Record an update; does not mutate any Jacobian-related state.  <br /></td></tr>
+<tr class="separator:a179cb09a91d5c638d7a347137b208767"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9b782cbf033ed2023da6b2d55dcefc4e" id="r_a9b782cbf033ed2023da6b2d55dcefc4e"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9b782cbf033ed2023da6b2d55dcefc4e">reset</a> () override</td></tr>
+<tr class="memdesc:a9b782cbf033ed2023da6b2d55dcefc4e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset counters to zero.  <br /></td></tr>
+<tr class="separator:a9b782cbf033ed2023da6b2d55dcefc4e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a594893c029f044be3119118808470f7a" id="r_a594893c029f044be3119118808470f7a"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a594893c029f044be3119118808470f7a">name</a> () const override</td></tr>
+<tr class="memdesc:a594893c029f044be3119118808470f7a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stable human-readable name.  <br /></td></tr>
+<tr class="separator:a594893c029f044be3119118808470f7a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3af973e466ba62ebf1e41c608355e327" id="r_a3af973e466ba62ebf1e41c608355e327"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3af973e466ba62ebf1e41c608355e327">why</a> (const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) const override</td></tr>
+<tr class="memdesc:a3af973e466ba62ebf1e41c608355e327"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structured explanation of the evaluation outcome.  <br /></td></tr>
+<tr class="separator:a3af973e466ba62ebf1e41c608355e327"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad0dd92f9da6c291c3bd57c0983940035" id="r_ad0dd92f9da6c291c3bd57c0983940035"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad0dd92f9da6c291c3bd57c0983940035">describe</a> () const override</td></tr>
+<tr class="memdesc:ad0dd92f9da6c291c3bd57c0983940035"><td class="mdescLeft">&#160;</td><td class="mdescRight">Textual description including configured threshold.  <br /></td></tr>
+<tr class="separator:ad0dd92f9da6c291c3bd57c0983940035"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a32980aaf6d9c7632c024b4b74b1d9e70" id="r_a32980aaf6d9c7632c024b4b74b1d9e70"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a32980aaf6d9c7632c024b4b74b1d9e70">numTriggers</a> () const override</td></tr>
+<tr class="memdesc:a32980aaf6d9c7632c024b4b74b1d9e70"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of true evaluations since last reset.  <br /></td></tr>
+<tr class="separator:a32980aaf6d9c7632c024b4b74b1d9e70"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0e1ad148f9f3232992a4b16e440c249a" id="r_a0e1ad148f9f3232992a4b16e440c249a"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0e1ad148f9f3232992a4b16e440c249a">numMisses</a> () const override</td></tr>
+<tr class="memdesc:a0e1ad148f9f3232992a4b16e440c249a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of false evaluations since last reset.  <br /></td></tr>
+<tr class="separator:a0e1ad148f9f3232992a4b16e440c249a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1trigger_1_1_trigger"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1trigger_1_1_trigger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:afbd9258d65370bbc965e799c82f0e1c0" id="r_afbd9258d65370bbc965e799c82f0e1c0"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afbd9258d65370bbc965e799c82f0e1c0">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="memdesc:afbd9258d65370bbc965e799c82f0e1c0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logger used for trace/error diagnostics.  <br /></td></tr>
+<tr class="separator:afbd9258d65370bbc965e799c82f0e1c0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aeac341c1e854d561a29aa39ad306d5d7" id="r_aeac341c1e854d561a29aa39ad306d5d7"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aeac341c1e854d561a29aa39ad306d5d7">m_threshold</a></td></tr>
+<tr class="memdesc:aeac341c1e854d561a29aa39ad306d5d7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Off-diagonal magnitude threshold (&gt;= 0).  <br /></td></tr>
+<tr class="separator:aeac341c1e854d561a29aa39ad306d5d7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr><td colspan="2"><div class="groupHeader">Diagnostics counters</div></td></tr>
+<tr class="memitem:a0d3b7c1d1057f442417c2f8c2a7177c5" id="r_a0d3b7c1d1057f442417c2f8c2a7177c5"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0d3b7c1d1057f442417c2f8c2a7177c5">m_hits</a> = 0</td></tr>
+<tr class="separator:a0d3b7c1d1057f442417c2f8c2a7177c5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a14b1884a9014df33a1ec90dd3433c0b9" id="r_a14b1884a9014df33a1ec90dd3433c0b9"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a14b1884a9014df33a1ec90dd3433c0b9">m_misses</a> = 0</td></tr>
+<tr class="separator:a14b1884a9014df33a1ec90dd3433c0b9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4885bdcc719a0f8c8394905893739b96" id="r_a4885bdcc719a0f8c8394905893739b96"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4885bdcc719a0f8c8394905893739b96">m_updates</a> = 0</td></tr>
+<tr class="separator:a4885bdcc719a0f8c8394905893739b96"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acd55d04da377c8bf4af3ea2fcf2f1918" id="r_acd55d04da377c8bf4af3ea2fcf2f1918"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#acd55d04da377c8bf4af3ea2fcf2f1918">m_resets</a> = 0</td></tr>
+<tr class="separator:acd55d04da377c8bf4af3ea2fcf2f1918"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Triggers when any off-diagonal Jacobian entry magnitude exceeds a threshold. </p>
+<p>Semantics:</p><ul>
+<li>Iterates over all species pairs (row != col) and queries the engine's Jacobian via ctx.engine.getJacobianMatrixEntry(row, col). If any |entry| &gt; threshold, check(ctx) returns true (short-circuits on first exceedance).</li>
+<li>update(ctx) only records an update counter; it does not cache Jacobian values.</li>
+</ul>
+<dl class="section note"><dt>Note</dt><dd>Complexity: O(S^2) per check for S species (due to dense scan).</dd></dl>
+<dl class="section user"><dt>Constraints/Errors:</dt><dd><ul>
+<li>Constructing with threshold &lt; 0 throws std::invalid_argument.</li>
+</ul>
+</dd></dl>
+<dl class="section user"><dt>See also</dt><dd><ul>
+<li><a class="el" href="engine__partitioning__trigger_8cpp.html">engine_partitioning_trigger.cpp</a> for concrete logic and trace logging. </li>
+</ul>
+</dd></dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a6dc334b85ffb822880c6740dc457ea52" name="a6dc334b85ffb822880c6740dc457ea52"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6dc334b85ffb822880c6740dc457ea52">&#9670;&#160;</a></span>OffDiagonalTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::trigger::solver::CVODE::OffDiagonalTrigger::OffDiagonalTrigger </td>
+          <td>(</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>threshold</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel explicit">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct with a non-negative magnitude threshold. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">threshold</td><td>Off-diagonal Jacobian magnitude threshold (&gt;= 0). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::invalid_argument</td><td>if threshold &lt; 0. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a3855b15459217383647ecdf12bc35775" name="a3855b15459217383647ecdf12bc35775"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3855b15459217383647ecdf12bc35775">&#9670;&#160;</a></span>check()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::trigger::solver::CVODE::OffDiagonalTrigger::check </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Check if any off-diagonal Jacobian entry exceeds the threshold. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">CVODE</a> timestep context providing access to engine species and Jacobian. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if max_{i!=j} |J(i,j)| &gt; threshold; false otherwise.</dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>increments hit/miss counters and may emit trace logs. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ad0dd92f9da6c291c3bd57c0983940035" name="ad0dd92f9da6c291c3bd57c0983940035"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad0dd92f9da6c291c3bd57c0983940035">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::trigger::solver::CVODE::OffDiagonalTrigger::describe </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Textual description including configured threshold. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a594893c029f044be3119118808470f7a" name="a594893c029f044be3119118808470f7a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a594893c029f044be3119118808470f7a">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::trigger::solver::CVODE::OffDiagonalTrigger::name </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Stable human-readable name. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a0e1ad148f9f3232992a4b16e440c249a" name="a0e1ad148f9f3232992a4b16e440c249a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0e1ad148f9f3232992a4b16e440c249a">&#9670;&#160;</a></span>numMisses()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::OffDiagonalTrigger::numMisses </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of false evaluations since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a32980aaf6d9c7632c024b4b74b1d9e70" name="a32980aaf6d9c7632c024b4b74b1d9e70"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a32980aaf6d9c7632c024b4b74b1d9e70">&#9670;&#160;</a></span>numTriggers()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::OffDiagonalTrigger::numTriggers </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of true evaluations since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a9b782cbf033ed2023da6b2d55dcefc4e" name="a9b782cbf033ed2023da6b2d55dcefc4e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9b782cbf033ed2023da6b2d55dcefc4e">&#9670;&#160;</a></span>reset()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::OffDiagonalTrigger::reset </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reset counters to zero. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a179cb09a91d5c638d7a347137b208767" name="a179cb09a91d5c638d7a347137b208767"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a179cb09a91d5c638d7a347137b208767">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::OffDiagonalTrigger::update </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Record an update; does not mutate any Jacobian-related state. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">CVODE</a> timestep context (unused except for symmetry with interface). </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a3af973e466ba62ebf1e41c608355e327" name="a3af973e466ba62ebf1e41c608355e327"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3af973e466ba62ebf1e41c608355e327">&#9670;&#160;</a></span>why()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> gridfire::trigger::solver::CVODE::OffDiagonalTrigger::why </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Structured explanation of the evaluation outcome. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">CVODE</a> timestep context. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a0d3b7c1d1057f442417c2f8c2a7177c5" name="a0d3b7c1d1057f442417c2f8c2a7177c5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0d3b7c1d1057f442417c2f8c2a7177c5">&#9670;&#160;</a></span>m_hits</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_hits = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="afbd9258d65370bbc965e799c82f0e1c0" name="afbd9258d65370bbc965e799c82f0e1c0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afbd9258d65370bbc965e799c82f0e1c0">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logger used for trace/error diagnostics. </p>
+
+</div>
+</div>
+<a id="a14b1884a9014df33a1ec90dd3433c0b9" name="a14b1884a9014df33a1ec90dd3433c0b9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a14b1884a9014df33a1ec90dd3433c0b9">&#9670;&#160;</a></span>m_misses</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_misses = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="acd55d04da377c8bf4af3ea2fcf2f1918" name="acd55d04da377c8bf4af3ea2fcf2f1918"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acd55d04da377c8bf4af3ea2fcf2f1918">&#9670;&#160;</a></span>m_resets</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_resets = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aeac341c1e854d561a29aa39ad306d5d7" name="aeac341c1e854d561a29aa39ad306d5d7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aeac341c1e854d561a29aa39ad306d5d7">&#9670;&#160;</a></span>m_threshold</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_threshold</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Off-diagonal magnitude threshold (&gt;= 0). </p>
+
+</div>
+</div>
+<a id="a4885bdcc719a0f8c8394905893739b96" name="a4885bdcc719a0f8c8394905893739b96"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4885bdcc719a0f8c8394905893739b96">&#9670;&#160;</a></span>m_updates</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_updates = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/solver/strategies/triggers/<a class="el" href="engine__partitioning__trigger_8h.html">engine_partitioning_trigger.h</a></li>
+<li>src/lib/solver/strategies/triggers/<a class="el" href="engine__partitioning__trigger_8cpp.html">engine_partitioning_trigger.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger_1_1solver.html">solver</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">CVODE</a></li><li class="navelem"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">OffDiagonalTrigger</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.js b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.js
new file mode 100644
index 00000000..07d188d3
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.js
@@ -0,0 +1,18 @@
+var classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger =
+[
+    [ "OffDiagonalTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a6dc334b85ffb822880c6740dc457ea52", null ],
+    [ "check", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3855b15459217383647ecdf12bc35775", null ],
+    [ "describe", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#ad0dd92f9da6c291c3bd57c0983940035", null ],
+    [ "name", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a594893c029f044be3119118808470f7a", null ],
+    [ "numMisses", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0e1ad148f9f3232992a4b16e440c249a", null ],
+    [ "numTriggers", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a32980aaf6d9c7632c024b4b74b1d9e70", null ],
+    [ "reset", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a9b782cbf033ed2023da6b2d55dcefc4e", null ],
+    [ "update", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a179cb09a91d5c638d7a347137b208767", null ],
+    [ "why", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3af973e466ba62ebf1e41c608355e327", null ],
+    [ "m_hits", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0d3b7c1d1057f442417c2f8c2a7177c5", null ],
+    [ "m_logger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#afbd9258d65370bbc965e799c82f0e1c0", null ],
+    [ "m_misses", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a14b1884a9014df33a1ec90dd3433c0b9", null ],
+    [ "m_resets", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#acd55d04da377c8bf4af3ea2fcf2f1918", null ],
+    [ "m_threshold", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#aeac341c1e854d561a29aa39ad306d5d7", null ],
+    [ "m_updates", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a4885bdcc719a0f8c8394905893739b96", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.png b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.png
new file mode 100644
index 0000000000000000000000000000000000000000..c2e094ebc155f59f528fc995c42c689c858e9e0d
GIT binary patch
literal 1473
zcmb_c`9G8i7=Pun8AY^{T)79)IFg%T$uwT3NeJVJigGl$Bj;|EHpjNFWrRf;W^*qV
zu}q5^(=^nq`yO(|H10CP+SmRK`~2{n-{*OLc)p+KM<)VK{D|BU006{6dpl<U5aPhT
z6G9l)ve6h1*vLEKU9tQ7`>?yXvK9SPC)HG6D@=y`ZgF~g8qOQB+$eBOG|HLa0>JTq
zVsfaU9{|3=gLXEqu|nKmN1zRDvDAXQ1Fp1vWHI_CU1p)!-`PArobHvPZY9|~+(e2b
zjWx+i8ADM&Q$Vw8P$OCs59Q9Kg6#T2eb968Nmvh6az=qM^GG6151d!C+;`)mMgmn%
zK|6UC+kQpm^iVOq*H2Y@f4Ic2HupZNn#Fh)wE8@2?v+WPiC342AV<<ZqKe!C`Iiw*
zQ5$EK#w#jQ%W0>T-tns~ynA>2<=~1&t~-L~^68%fH|CAeZfakf;WN3A@X?f@w3{PI
zm_oXspJ*T+SDT_8miyjfqiSl{Dyt_cC+WI2%e)V%mZaat9Q;zX+>%azO+7}wr@CAB
zMuIX{c)68;3sq=5T|W5&Q+!pFn&>L5<%>oVF0=U6coCb;zH=Or%5bYW52I^Cve8RY
z6vxi8QP+Ha^lfh8K#@taba=aDZ$@`X1`9z|Fw-j`(#l>e-aZxYJ8tpCW_j)OU_-T5
zu(T){JDs=s*;Bocd*#7P8G@tgz_xK-a0auT)bbFQf>~)seN7-ohMeT7aE5PT3>M&X
z=**^v#M=2;j_6i#3Ree=5*)6#M36<LPh<&5c+C6VFhUE1atGtvm11V--9^HB*0M`8
zqiw$qPx88$9K!~Uy;H9A$0Szpg%(~6!Ia)%Yx-pFLpjD<89TIdv@|hxipQ*<49ymq
zRd95#^5c$IB9z9!`B_iXcn2&uV=Pb!ul@O+sq^xTs@rTsQmIx}&+G(upZHz6tF}Fc
z)7c(#askWtM>=*tp?UM7bT}XMvp+)lXVn-_2Ulv-&O^RsYiJF|xxEeLD1knB)ujOk
zeZ+@s4|S<9YT1EPstlt&MUDr`e*JmHx(yUrJ>n~ohN3xOGc_3@d~7FbNfq>p=tKn(
z33(_Trf4=L;DCBn@*L8b@lX?~;G)p0eFtk``VdeW(Fyo@SX*bw04r}rg}=Wx0a#oI
z^v`ID0ZnrWLa$(!0v@@@!vOODNF>MrXeJDU=K*zS7z9)Ke+B)MoO&Mdmy|8y!UJVc
z7c|h)M1$}Sbw+(*9g3KX%tbNzXwIJ37Z=1D!8yD;&AlsM(8bkzsz?)L)6INOv{Tvy
zONt}|2lk8Y!@tvMUby7?hrII|pjx|JZ=(+?TU66+3p+(&KUmZqRbRsJ0Z!r{lgWS2
zB);Q*-MmM3Bizs-2!4~A??<i6%SAqxs*#Js9Akv>(AWZNq_xlZMB)|8mn=_nXj2ep
z&AF91mhRKaGGs@a$1Rs&CrVy^%3MyZ)Ch=Sjp^3!w)fjyp1-wZ&mP-6-dW};M#{8o
zyxZG4UnJj$a2Ko=hV51C+_@C1qX5RGbleZKXq;6U@xlJN)Pdd+zA-`>RhF*U%v;?+
zifGL}w^AFYs)4lHP-2%_d~$HuR!x1I$+tz-Z*6j}5^zwGm(q9|E`ErZqe$`=pS)uy
zf~3lR9yHS?`?$}gtXU-xV)L_5?KV8kgg$BwW8$s-Rt3u{cfw<D)TYLZdYqdPKZhQ|
zCqPY)S|pk;wzi|*tcw}r++>!W!w(uSDk<+?3NrLYEwx4I)LYvxL<;IqJ}wObj_jBv
zPygg!dT|w-mBl?<E>MTlkgA{{%F3loouLjElMk*I(Fyqz2_6tkA4e!)0+A+p|4gdn
a?N8P&WjR(w25Tnpvjspb!LG*E@BY6>?aA^0

literal 0
HcmV?d00001

diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger-members.html
new file mode 100644
index 00000000..0e771037
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger-members.html
@@ -0,0 +1,135 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::trigger::solver::CVODE::SimulationTimeTrigger Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a50df7fefee167390522aa258fa6ee960">check</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a0f412b8f788ab7990e353d62ab7d9a16">describe</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a2b1b4a9ef137e76d39e7a7dcb6cf725d">m_hits</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab6215873390f6bedab5c9f83b990b5e0">m_interval</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a51ac3899010c2790fc98801ffba9407e">m_last_trigger_time</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab93cb25bbebb159a8608a737bd972abd">m_last_trigger_time_delta</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a16e9b87a8abb05bb6b5410903eb49e91">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a00ede9fff51a8318913fd2ed504c1007">m_misses</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a3004a10bb89ecd7b2ba6103c9f5d4b96">m_resets</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab80799eb7c80b3b20c1a7e7f9e1f5030">m_updates</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a87fc9fe6bd8762f148c858452ec30043">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a273eb8a3e80d1235d2b3f252e55c5b50">numMisses</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a34d285584ea96f71b99eefad8c738296">numTriggers</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#af4034fa431e6c88fd05c50cce31b2fa0">reset</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a235f84a37370a1ca2226fb881b4051c7">SimulationTimeTrigger</a>(double interval)</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a468bf58f66417493501c59d7a8aabc98">update</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a9dfab0b765d3a4c362cecd860d59f58a">why</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html
new file mode 100644
index 00000000..910b9ad7
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html
@@ -0,0 +1,689 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::trigger::solver::CVODE::SimulationTimeTrigger Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::solver::CVODE::SimulationTimeTrigger Class Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Triggers when the current simulation time advances by at least a fixed interval.  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;engine_partitioning_trigger.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::solver::CVODE::SimulationTimeTrigger:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.png" usemap="#gridfire::trigger::solver::CVODE::SimulationTimeTrigger_map" alt=""/>
+  <map id="gridfire::trigger::solver::CVODE::SimulationTimeTrigger_map" name="gridfire::trigger::solver::CVODE::SimulationTimeTrigger_map">
+<area href="classgridfire_1_1trigger_1_1_trigger.html" alt="gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;" shape="rect" coords="0,0,481,24"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a235f84a37370a1ca2226fb881b4051c7" id="r_a235f84a37370a1ca2226fb881b4051c7"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a235f84a37370a1ca2226fb881b4051c7">SimulationTimeTrigger</a> (double interval)</td></tr>
+<tr class="memdesc:a235f84a37370a1ca2226fb881b4051c7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct with a positive time interval between firings.  <br /></td></tr>
+<tr class="separator:a235f84a37370a1ca2226fb881b4051c7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a50df7fefee167390522aa258fa6ee960" id="r_a50df7fefee167390522aa258fa6ee960"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a50df7fefee167390522aa258fa6ee960">check</a> (const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) const override</td></tr>
+<tr class="memdesc:a50df7fefee167390522aa258fa6ee960"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate whether enough simulated time has elapsed since the last trigger.  <br /></td></tr>
+<tr class="separator:a50df7fefee167390522aa258fa6ee960"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a468bf58f66417493501c59d7a8aabc98" id="r_a468bf58f66417493501c59d7a8aabc98"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a468bf58f66417493501c59d7a8aabc98">update</a> (const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) override</td></tr>
+<tr class="memdesc:a468bf58f66417493501c59d7a8aabc98"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update internal state; if check(ctx) is true, advance last_trigger_time.  <br /></td></tr>
+<tr class="separator:a468bf58f66417493501c59d7a8aabc98"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af4034fa431e6c88fd05c50cce31b2fa0" id="r_af4034fa431e6c88fd05c50cce31b2fa0"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af4034fa431e6c88fd05c50cce31b2fa0">reset</a> () override</td></tr>
+<tr class="memdesc:af4034fa431e6c88fd05c50cce31b2fa0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset counters and last trigger bookkeeping (time and delta) to zero.  <br /></td></tr>
+<tr class="separator:af4034fa431e6c88fd05c50cce31b2fa0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a87fc9fe6bd8762f148c858452ec30043" id="r_a87fc9fe6bd8762f148c858452ec30043"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a87fc9fe6bd8762f148c858452ec30043">name</a> () const override</td></tr>
+<tr class="memdesc:a87fc9fe6bd8762f148c858452ec30043"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stable human-readable name.  <br /></td></tr>
+<tr class="separator:a87fc9fe6bd8762f148c858452ec30043"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9dfab0b765d3a4c362cecd860d59f58a" id="r_a9dfab0b765d3a4c362cecd860d59f58a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9dfab0b765d3a4c362cecd860d59f58a">why</a> (const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) const override</td></tr>
+<tr class="memdesc:a9dfab0b765d3a4c362cecd860d59f58a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structured explanation of the evaluation outcome.  <br /></td></tr>
+<tr class="separator:a9dfab0b765d3a4c362cecd860d59f58a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0f412b8f788ab7990e353d62ab7d9a16" id="r_a0f412b8f788ab7990e353d62ab7d9a16"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0f412b8f788ab7990e353d62ab7d9a16">describe</a> () const override</td></tr>
+<tr class="memdesc:a0f412b8f788ab7990e353d62ab7d9a16"><td class="mdescLeft">&#160;</td><td class="mdescRight">Textual description including configured interval.  <br /></td></tr>
+<tr class="separator:a0f412b8f788ab7990e353d62ab7d9a16"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a34d285584ea96f71b99eefad8c738296" id="r_a34d285584ea96f71b99eefad8c738296"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a34d285584ea96f71b99eefad8c738296">numTriggers</a> () const override</td></tr>
+<tr class="memdesc:a34d285584ea96f71b99eefad8c738296"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of true evaluations since last reset.  <br /></td></tr>
+<tr class="separator:a34d285584ea96f71b99eefad8c738296"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a273eb8a3e80d1235d2b3f252e55c5b50" id="r_a273eb8a3e80d1235d2b3f252e55c5b50"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a273eb8a3e80d1235d2b3f252e55c5b50">numMisses</a> () const override</td></tr>
+<tr class="memdesc:a273eb8a3e80d1235d2b3f252e55c5b50"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of false evaluations since last reset.  <br /></td></tr>
+<tr class="separator:a273eb8a3e80d1235d2b3f252e55c5b50"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1trigger_1_1_trigger"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1trigger_1_1_trigger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a16e9b87a8abb05bb6b5410903eb49e91" id="r_a16e9b87a8abb05bb6b5410903eb49e91"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a16e9b87a8abb05bb6b5410903eb49e91">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="memdesc:a16e9b87a8abb05bb6b5410903eb49e91"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logger used for trace/error diagnostics.  <br /></td></tr>
+<tr class="separator:a16e9b87a8abb05bb6b5410903eb49e91"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab6215873390f6bedab5c9f83b990b5e0" id="r_ab6215873390f6bedab5c9f83b990b5e0"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab6215873390f6bedab5c9f83b990b5e0">m_interval</a></td></tr>
+<tr class="memdesc:ab6215873390f6bedab5c9f83b990b5e0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Required time interval between successive triggers.  <br /></td></tr>
+<tr class="separator:ab6215873390f6bedab5c9f83b990b5e0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a51ac3899010c2790fc98801ffba9407e" id="r_a51ac3899010c2790fc98801ffba9407e"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a51ac3899010c2790fc98801ffba9407e">m_last_trigger_time</a> = 0.0</td></tr>
+<tr class="memdesc:a51ac3899010c2790fc98801ffba9407e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Time at which the trigger last fired; initialized to 0.  <br /></td></tr>
+<tr class="separator:a51ac3899010c2790fc98801ffba9407e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab93cb25bbebb159a8608a737bd972abd" id="r_ab93cb25bbebb159a8608a737bd972abd"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab93cb25bbebb159a8608a737bd972abd">m_last_trigger_time_delta</a> = 0.0</td></tr>
+<tr class="memdesc:ab93cb25bbebb159a8608a737bd972abd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Overshoot relative to interval at the last firing; for diagnostics.  <br /></td></tr>
+<tr class="separator:ab93cb25bbebb159a8608a737bd972abd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr><td colspan="2"><div class="groupHeader">Diagnostics counters</div></td></tr>
+<tr class="memitem:a2b1b4a9ef137e76d39e7a7dcb6cf725d" id="r_a2b1b4a9ef137e76d39e7a7dcb6cf725d"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2b1b4a9ef137e76d39e7a7dcb6cf725d">m_hits</a> = 0</td></tr>
+<tr class="separator:a2b1b4a9ef137e76d39e7a7dcb6cf725d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a00ede9fff51a8318913fd2ed504c1007" id="r_a00ede9fff51a8318913fd2ed504c1007"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a00ede9fff51a8318913fd2ed504c1007">m_misses</a> = 0</td></tr>
+<tr class="separator:a00ede9fff51a8318913fd2ed504c1007"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab80799eb7c80b3b20c1a7e7f9e1f5030" id="r_ab80799eb7c80b3b20c1a7e7f9e1f5030"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab80799eb7c80b3b20c1a7e7f9e1f5030">m_updates</a> = 0</td></tr>
+<tr class="separator:ab80799eb7c80b3b20c1a7e7f9e1f5030"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3004a10bb89ecd7b2ba6103c9f5d4b96" id="r_a3004a10bb89ecd7b2ba6103c9f5d4b96"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3004a10bb89ecd7b2ba6103c9f5d4b96">m_resets</a> = 0</td></tr>
+<tr class="separator:a3004a10bb89ecd7b2ba6103c9f5d4b96"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Triggers when the current simulation time advances by at least a fixed interval. </p>
+<ul>
+<li>check(ctx) returns true when (ctx.t - last_trigger_time) &gt;= interval.</li>
+<li>update(ctx) will, if check(ctx) is true, record ctx.t as the new last_trigger_time and store a small delta relative to the configured interval (for diagnostics/logging).</li>
+<li>Counters (hits/misses/updates/resets) are maintained for diagnostics; they are mutable to allow updates from const <a class="el" href="#a50df7fefee167390522aa258fa6ee960" title="Evaluate whether enough simulated time has elapsed since the last trigger.">check()</a>.</li>
+</ul>
+<dl class="section user"><dt>Constraints/Errors:</dt><dd><ul>
+<li>Constructing with a non-positive interval throws std::invalid_argument.</li>
+</ul>
+</dd></dl>
+<dl class="section note"><dt>Note</dt><dd>Thread-safety: not thread-safe; intended for single-threaded trigger evaluation.</dd></dl>
+<p>See also: <a class="el" href="engine__partitioning__trigger_8cpp.html">engine_partitioning_trigger.cpp</a> for the concrete logic and logging. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a235f84a37370a1ca2226fb881b4051c7" name="a235f84a37370a1ca2226fb881b4051c7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a235f84a37370a1ca2226fb881b4051c7">&#9670;&#160;</a></span>SimulationTimeTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::trigger::solver::CVODE::SimulationTimeTrigger::SimulationTimeTrigger </td>
+          <td>(</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>interval</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel explicit">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct with a positive time interval between firings. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">interval</td><td>Strictly positive time interval (simulation units) between triggers. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::invalid_argument</td><td>if interval &lt;= 0. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a50df7fefee167390522aa258fa6ee960" name="a50df7fefee167390522aa258fa6ee960"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a50df7fefee167390522aa258fa6ee960">&#9670;&#160;</a></span>check()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::trigger::solver::CVODE::SimulationTimeTrigger::check </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate whether enough simulated time has elapsed since the last trigger. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">CVODE</a> timestep context providing the current simulation time (ctx.t). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if (ctx.t - last_trigger_time) &gt;= interval; false otherwise.</dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>increments hit/miss counters and may emit trace logs. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a0f412b8f788ab7990e353d62ab7d9a16" name="a0f412b8f788ab7990e353d62ab7d9a16"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0f412b8f788ab7990e353d62ab7d9a16">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::trigger::solver::CVODE::SimulationTimeTrigger::describe </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Textual description including configured interval. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a87fc9fe6bd8762f148c858452ec30043" name="a87fc9fe6bd8762f148c858452ec30043"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a87fc9fe6bd8762f148c858452ec30043">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::trigger::solver::CVODE::SimulationTimeTrigger::name </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Stable human-readable name. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a273eb8a3e80d1235d2b3f252e55c5b50" name="a273eb8a3e80d1235d2b3f252e55c5b50"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a273eb8a3e80d1235d2b3f252e55c5b50">&#9670;&#160;</a></span>numMisses()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::SimulationTimeTrigger::numMisses </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of false evaluations since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a34d285584ea96f71b99eefad8c738296" name="a34d285584ea96f71b99eefad8c738296"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a34d285584ea96f71b99eefad8c738296">&#9670;&#160;</a></span>numTriggers()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::SimulationTimeTrigger::numTriggers </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of true evaluations since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="af4034fa431e6c88fd05c50cce31b2fa0" name="af4034fa431e6c88fd05c50cce31b2fa0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af4034fa431e6c88fd05c50cce31b2fa0">&#9670;&#160;</a></span>reset()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::SimulationTimeTrigger::reset </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reset counters and last trigger bookkeeping (time and delta) to zero. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a468bf58f66417493501c59d7a8aabc98" name="a468bf58f66417493501c59d7a8aabc98"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a468bf58f66417493501c59d7a8aabc98">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::SimulationTimeTrigger::update </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Update internal state; if check(ctx) is true, advance last_trigger_time. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">CVODE</a> timestep context.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section note"><dt>Note</dt><dd><a class="el" href="#a468bf58f66417493501c59d7a8aabc98" title="Update internal state; if check(ctx) is true, advance last_trigger_time.">update()</a> calls check(ctx) and, on success, records the overshoot delta (ctx.t - last_trigger_time) - interval for diagnostics. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a9dfab0b765d3a4c362cecd860d59f58a" name="a9dfab0b765d3a4c362cecd860d59f58a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9dfab0b765d3a4c362cecd860d59f58a">&#9670;&#160;</a></span>why()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> gridfire::trigger::solver::CVODE::SimulationTimeTrigger::why </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Structured explanation of the evaluation outcome. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">CVODE</a> timestep context. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> including name, value, and description. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a2b1b4a9ef137e76d39e7a7dcb6cf725d" name="a2b1b4a9ef137e76d39e7a7dcb6cf725d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2b1b4a9ef137e76d39e7a7dcb6cf725d">&#9670;&#160;</a></span>m_hits</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_hits = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab6215873390f6bedab5c9f83b990b5e0" name="ab6215873390f6bedab5c9f83b990b5e0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab6215873390f6bedab5c9f83b990b5e0">&#9670;&#160;</a></span>m_interval</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_interval</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Required time interval between successive triggers. </p>
+
+</div>
+</div>
+<a id="a51ac3899010c2790fc98801ffba9407e" name="a51ac3899010c2790fc98801ffba9407e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a51ac3899010c2790fc98801ffba9407e">&#9670;&#160;</a></span>m_last_trigger_time</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_last_trigger_time = 0.0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Time at which the trigger last fired; initialized to 0. </p>
+
+</div>
+</div>
+<a id="ab93cb25bbebb159a8608a737bd972abd" name="ab93cb25bbebb159a8608a737bd972abd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab93cb25bbebb159a8608a737bd972abd">&#9670;&#160;</a></span>m_last_trigger_time_delta</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_last_trigger_time_delta = 0.0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Overshoot relative to interval at the last firing; for diagnostics. </p>
+
+</div>
+</div>
+<a id="a16e9b87a8abb05bb6b5410903eb49e91" name="a16e9b87a8abb05bb6b5410903eb49e91"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a16e9b87a8abb05bb6b5410903eb49e91">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logger used for trace/error diagnostics. </p>
+
+</div>
+</div>
+<a id="a00ede9fff51a8318913fd2ed504c1007" name="a00ede9fff51a8318913fd2ed504c1007"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a00ede9fff51a8318913fd2ed504c1007">&#9670;&#160;</a></span>m_misses</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_misses = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a3004a10bb89ecd7b2ba6103c9f5d4b96" name="a3004a10bb89ecd7b2ba6103c9f5d4b96"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3004a10bb89ecd7b2ba6103c9f5d4b96">&#9670;&#160;</a></span>m_resets</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_resets = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab80799eb7c80b3b20c1a7e7f9e1f5030" name="ab80799eb7c80b3b20c1a7e7f9e1f5030"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab80799eb7c80b3b20c1a7e7f9e1f5030">&#9670;&#160;</a></span>m_updates</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_updates = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/solver/strategies/triggers/<a class="el" href="engine__partitioning__trigger_8h.html">engine_partitioning_trigger.h</a></li>
+<li>src/lib/solver/strategies/triggers/<a class="el" href="engine__partitioning__trigger_8cpp.html">engine_partitioning_trigger.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger_1_1solver.html">solver</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">CVODE</a></li><li class="navelem"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">SimulationTimeTrigger</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.js b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.js
new file mode 100644
index 00000000..2e6bcfef
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.js
@@ -0,0 +1,20 @@
+var classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger =
+[
+    [ "SimulationTimeTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a235f84a37370a1ca2226fb881b4051c7", null ],
+    [ "check", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a50df7fefee167390522aa258fa6ee960", null ],
+    [ "describe", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a0f412b8f788ab7990e353d62ab7d9a16", null ],
+    [ "name", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a87fc9fe6bd8762f148c858452ec30043", null ],
+    [ "numMisses", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a273eb8a3e80d1235d2b3f252e55c5b50", null ],
+    [ "numTriggers", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a34d285584ea96f71b99eefad8c738296", null ],
+    [ "reset", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#af4034fa431e6c88fd05c50cce31b2fa0", null ],
+    [ "update", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a468bf58f66417493501c59d7a8aabc98", null ],
+    [ "why", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a9dfab0b765d3a4c362cecd860d59f58a", null ],
+    [ "m_hits", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a2b1b4a9ef137e76d39e7a7dcb6cf725d", null ],
+    [ "m_interval", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab6215873390f6bedab5c9f83b990b5e0", null ],
+    [ "m_last_trigger_time", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a51ac3899010c2790fc98801ffba9407e", null ],
+    [ "m_last_trigger_time_delta", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab93cb25bbebb159a8608a737bd972abd", null ],
+    [ "m_logger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a16e9b87a8abb05bb6b5410903eb49e91", null ],
+    [ "m_misses", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a00ede9fff51a8318913fd2ed504c1007", null ],
+    [ "m_resets", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a3004a10bb89ecd7b2ba6103c9f5d4b96", null ],
+    [ "m_updates", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab80799eb7c80b3b20c1a7e7f9e1f5030", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.png b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.png
new file mode 100644
index 0000000000000000000000000000000000000000..ea189bb33d9372798523ded4d97a764ff2899a3d
GIT binary patch
literal 1494
zcmb_cc`%!482{8bD`>T&+O4AvR<m^#Rp%(dSCy!{8mnP7ZB1Ict`JeH(P>p3VU;4r
zBC3um6}Pm}ve`IR=tde18Fhp>Mubh4X203l*_r)+pFiH`dEWOo&+mEXIUWU|d|;Z#
zH30yCfxcdW0H7p<>;QFT=rl-j4Tsc;fXl&1g+c+D%VKF#KC|A@+9Lkg(~;%5xjE?G
zel)ZedecY@L<Iqm|F@h!P(B3!Dp=6VBbcDHRw=qOZ>>f4iMejGp?JqPEAcuRDz*dl
zF?7RWHDr<8YsHF==U?R0@u=)4a8I}>(4!RYicl}A#i?K^+fBxoDO7vYiWT%FSzhgh
ztwE6=Me4iDXkUc$L|%^Y)mQZC``sr#ja}$FjC<6jI<U!ibkX;s7J1gN9y^pM_p-V|
zVE4+RG=79HrR5+%hlp&?Hp5jG9&^-gKAY6K#dmV4l-!T?r99~gr<(LxHEbj_l<?bF
z=#7+Ek0jb6PKQ?YY;uu1*xhe6mNW5=c%u02t!kYi1S2(_TDbqB;)gSlmE7z?_weSm
z<&7qO*JzBSVbIo!e3vFuUZCFyZeiOzLwT3h?f%yH#YGRLc&-v1RbhttIYNfd)y_Ir
z6~;UtDoGb(lCYfyFp&YLq&1}K5|@$Zug1PHeyzN`i>i)8MstQj$?QDL!J7-*;|4g%
z^zfovxKS>3Ji7N|4=uT{6@OruoYL4%ZcLrTT0WR8`ntbghgKHT+vy)iaNq?oO6K+>
zN1G7>PbLrNd@f%jWj<|4KaSviePG&hD&GH(+c0;yP4mno8I~QxsGLxL?S|1?x4q@_
zGLF#pfM!3FQY(o}qrb9LH!9Enb5j)G6B2|{`}7LSZ;Lo&xZk3|ogUXk)w;@G*Q-Qh
zxK<-OLK34BPnt2)S#<7fnRzSk;Oe?Lm|xA06N)X$1ZABQHl>`I)x_e7#ZxKsJ{j#-
zsD=FAmkOe?eS=+rH*+X0rG$%=eW&j?6u_8SPjnUX?20~HBqexL5S8cdxqU_1tGA1K
z510A6Q^{B(GgjQnjxPlxs*p*91)tsPcmqhv(zX+`8!Y&Yv|qaq=Q`oOq&vc8Xx27?
z(nr%jY{t?B<$=0p;J79eF1q?}*O3kh==g(pK3#SM*b9>@113QH3u7%HPr8IQRs|TE
zOkgfNDpT18=nBzQ1!gq|fVrz4#{d_Ex^gDev%qE(gr*)PE4^vYvIYpD5D239UqK2Z
zVR4{lT`?ud1Pp|}eMa4n0#SooO~&7V5Va|*-OZDr7}|xV21S9Urcv0mHpz{$>8ac`
z@0?A$(r<Sf{$X%BcVpw*8{G@%(Xr;B`;<={!S<Xv2y!s&?^DPn@fn;*t<&&^AkT1$
z(@CGLM*P+j^6t@nlI45iwGo+Uzolt=Y-&$Dc_)`$Fmm_yw5^Tf*=-Hs9#ig6^-ISy
z<>~h4YzyM3Y(dg3hKsV(jD-APvExonH5S)05`}Xzn9yEs@g9_r{k2Tx&e^=DBmTlv
z>z4G@E6J4YwEmwq1C#<e&jot~a&vnOQ;j5j7~iY2lw@I=P+DhAoH@L%HI(_(!;gcI
zHj>w-4D|%fmn#+o^u0&bCpqHQ;mEYi>GwsQWkKYG3<NU<ig|HA88$vLT&2yu8T)Df
z;bxPrQKBdohAtngff9_Bzj4Dz+-B==&L6^~V{?9Ou-Zw^AhN-GF2)!{7$_yQ`B}9W
z)rPH*$PB%k#I4qiV$~1z<@`JAxg?F(HS8nW4~StM$UrAt0=B@;16Dn2S^g$ZV<|I&
zIm`n&t5R>Kdrt5CDKKxFB^EGr{5bZ~H8f>!d6L)P;pe{Evx5e=XgauEf#q4y1eCk}
lx1w3C@YLV+|0z6rU!~x2ajdh?M+vln0T7AuYPonl>n}Bl;*tOW

literal 0
HcmV?d00001

diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger-members.html
new file mode 100644
index 00000000..c489608b
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger-members.html
@@ -0,0 +1,137 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a04598611b0807cad395bdd2fbc41a6c2">check</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a8ba5a942bb61347851030d1eb6bbaa74">describe</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aff23db33140aa6a5a2ad36eda77b833d">m_hits</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#abe902b2a42a6451f64497e075b0e0b25">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a021c760717efef3fc3b415dee6d4840b">m_misses</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa4162916f562b4d7ea0205d6f3e6f917">m_relative</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad4cc7113574f71905bc93cc40024b4bd">m_resets</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ab7d86e5c89a848cf238141393fe3a8de">m_threshold</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ae18e08a0bd72b68605d64e4d84355f79">m_timestep_window</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a25f6ac369c590a8370270bdc70545171">m_updates</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa03c13813065f720cf698c240f07d559">m_windowSize</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a290e5643eea08726d2fd44a1cd5617d0">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a94bb1de08a5ff55e1874f595f8c8965c">numMisses</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad2a7c2567b100f97a024f65818ecefed">numTriggers</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a0fe6af73b11b820561bd4e5552890d4e">reset</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a171e6dee7f7d8275b3e8875eaeb0850d">TimestepCollapseTrigger</a>(double threshold, bool relative)</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ae47a4f822f92774f6dc780ae74f12066">TimestepCollapseTrigger</a>(double threshold, bool relative, size_t windowSize)</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#af6bff6a484e8729445c26620b489665d">update</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a22d8bc7aacbc388108225c26158e918c">why</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html
new file mode 100644
index 00000000..6fe23afe
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html
@@ -0,0 +1,779 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::trigger::solver::CVODE::TimestepCollapseTrigger Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger Class Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Triggers when the timestep deviates from its recent average beyond a threshold.  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;engine_partitioning_trigger.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::solver::CVODE::TimestepCollapseTrigger:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.png" usemap="#gridfire::trigger::solver::CVODE::TimestepCollapseTrigger_map" alt=""/>
+  <map id="gridfire::trigger::solver::CVODE::TimestepCollapseTrigger_map" name="gridfire::trigger::solver::CVODE::TimestepCollapseTrigger_map">
+<area href="classgridfire_1_1trigger_1_1_trigger.html" alt="gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;" shape="rect" coords="0,0,481,24"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a171e6dee7f7d8275b3e8875eaeb0850d" id="r_a171e6dee7f7d8275b3e8875eaeb0850d"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a171e6dee7f7d8275b3e8875eaeb0850d">TimestepCollapseTrigger</a> (double threshold, bool relative)</td></tr>
+<tr class="memdesc:a171e6dee7f7d8275b3e8875eaeb0850d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct with threshold and relative/absolute mode; window size defaults to 1.  <br /></td></tr>
+<tr class="separator:a171e6dee7f7d8275b3e8875eaeb0850d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae47a4f822f92774f6dc780ae74f12066" id="r_ae47a4f822f92774f6dc780ae74f12066"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae47a4f822f92774f6dc780ae74f12066">TimestepCollapseTrigger</a> (double threshold, bool relative, size_t windowSize)</td></tr>
+<tr class="memdesc:ae47a4f822f92774f6dc780ae74f12066"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct with threshold, mode, and window size.  <br /></td></tr>
+<tr class="separator:ae47a4f822f92774f6dc780ae74f12066"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a04598611b0807cad395bdd2fbc41a6c2" id="r_a04598611b0807cad395bdd2fbc41a6c2"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a04598611b0807cad395bdd2fbc41a6c2">check</a> (const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) const override</td></tr>
+<tr class="memdesc:a04598611b0807cad395bdd2fbc41a6c2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate whether the current dt deviates sufficiently from recent average.  <br /></td></tr>
+<tr class="separator:a04598611b0807cad395bdd2fbc41a6c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af6bff6a484e8729445c26620b489665d" id="r_af6bff6a484e8729445c26620b489665d"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af6bff6a484e8729445c26620b489665d">update</a> (const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) override</td></tr>
+<tr class="memdesc:af6bff6a484e8729445c26620b489665d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update sliding window with the most recent dt and increment update counter.  <br /></td></tr>
+<tr class="separator:af6bff6a484e8729445c26620b489665d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0fe6af73b11b820561bd4e5552890d4e" id="r_a0fe6af73b11b820561bd4e5552890d4e"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0fe6af73b11b820561bd4e5552890d4e">reset</a> () override</td></tr>
+<tr class="memdesc:a0fe6af73b11b820561bd4e5552890d4e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset counters and clear the dt window.  <br /></td></tr>
+<tr class="separator:a0fe6af73b11b820561bd4e5552890d4e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a290e5643eea08726d2fd44a1cd5617d0" id="r_a290e5643eea08726d2fd44a1cd5617d0"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a290e5643eea08726d2fd44a1cd5617d0">name</a> () const override</td></tr>
+<tr class="memdesc:a290e5643eea08726d2fd44a1cd5617d0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stable human-readable name.  <br /></td></tr>
+<tr class="separator:a290e5643eea08726d2fd44a1cd5617d0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a22d8bc7aacbc388108225c26158e918c" id="r_a22d8bc7aacbc388108225c26158e918c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a22d8bc7aacbc388108225c26158e918c">why</a> (const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) const override</td></tr>
+<tr class="memdesc:a22d8bc7aacbc388108225c26158e918c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structured explanation of the evaluation outcome.  <br /></td></tr>
+<tr class="separator:a22d8bc7aacbc388108225c26158e918c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8ba5a942bb61347851030d1eb6bbaa74" id="r_a8ba5a942bb61347851030d1eb6bbaa74"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8ba5a942bb61347851030d1eb6bbaa74">describe</a> () const override</td></tr>
+<tr class="memdesc:a8ba5a942bb61347851030d1eb6bbaa74"><td class="mdescLeft">&#160;</td><td class="mdescRight">Textual description including threshold, mode, and window size.  <br /></td></tr>
+<tr class="separator:a8ba5a942bb61347851030d1eb6bbaa74"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad2a7c2567b100f97a024f65818ecefed" id="r_ad2a7c2567b100f97a024f65818ecefed"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad2a7c2567b100f97a024f65818ecefed">numTriggers</a> () const override</td></tr>
+<tr class="memdesc:ad2a7c2567b100f97a024f65818ecefed"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of true evaluations since last reset.  <br /></td></tr>
+<tr class="separator:ad2a7c2567b100f97a024f65818ecefed"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a94bb1de08a5ff55e1874f595f8c8965c" id="r_a94bb1de08a5ff55e1874f595f8c8965c"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a94bb1de08a5ff55e1874f595f8c8965c">numMisses</a> () const override</td></tr>
+<tr class="memdesc:a94bb1de08a5ff55e1874f595f8c8965c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of false evaluations since last reset.  <br /></td></tr>
+<tr class="separator:a94bb1de08a5ff55e1874f595f8c8965c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1trigger_1_1_trigger"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1trigger_1_1_trigger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1_trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:abe902b2a42a6451f64497e075b0e0b25" id="r_abe902b2a42a6451f64497e075b0e0b25"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abe902b2a42a6451f64497e075b0e0b25">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="memdesc:abe902b2a42a6451f64497e075b0e0b25"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logger used for trace/error diagnostics.  <br /></td></tr>
+<tr class="separator:abe902b2a42a6451f64497e075b0e0b25"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab7d86e5c89a848cf238141393fe3a8de" id="r_ab7d86e5c89a848cf238141393fe3a8de"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab7d86e5c89a848cf238141393fe3a8de">m_threshold</a></td></tr>
+<tr class="memdesc:ab7d86e5c89a848cf238141393fe3a8de"><td class="mdescLeft">&#160;</td><td class="mdescRight">Threshold for absolute or relative deviation.  <br /></td></tr>
+<tr class="separator:ab7d86e5c89a848cf238141393fe3a8de"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa4162916f562b4d7ea0205d6f3e6f917" id="r_aa4162916f562b4d7ea0205d6f3e6f917"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa4162916f562b4d7ea0205d6f3e6f917">m_relative</a></td></tr>
+<tr class="memdesc:aa4162916f562b4d7ea0205d6f3e6f917"><td class="mdescLeft">&#160;</td><td class="mdescRight">When true, use relative deviation; otherwise absolute deviation.  <br /></td></tr>
+<tr class="separator:aa4162916f562b4d7ea0205d6f3e6f917"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa03c13813065f720cf698c240f07d559" id="r_aa03c13813065f720cf698c240f07d559"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa03c13813065f720cf698c240f07d559">m_windowSize</a></td></tr>
+<tr class="memdesc:aa03c13813065f720cf698c240f07d559"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of dt samples to maintain in the moving window.  <br /></td></tr>
+<tr class="separator:aa03c13813065f720cf698c240f07d559"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae18e08a0bd72b68605d64e4d84355f79" id="r_ae18e08a0bd72b68605d64e4d84355f79"><td class="memItemLeft" align="right" valign="top">std::deque&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae18e08a0bd72b68605d64e4d84355f79">m_timestep_window</a></td></tr>
+<tr class="memdesc:ae18e08a0bd72b68605d64e4d84355f79"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sliding window of recent timesteps (most recent at back).  <br /></td></tr>
+<tr class="separator:ae18e08a0bd72b68605d64e4d84355f79"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr><td colspan="2"><div class="groupHeader">Diagnostics counters</div></td></tr>
+<tr class="memitem:aff23db33140aa6a5a2ad36eda77b833d" id="r_aff23db33140aa6a5a2ad36eda77b833d"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aff23db33140aa6a5a2ad36eda77b833d">m_hits</a> = 0</td></tr>
+<tr class="separator:aff23db33140aa6a5a2ad36eda77b833d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a021c760717efef3fc3b415dee6d4840b" id="r_a021c760717efef3fc3b415dee6d4840b"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a021c760717efef3fc3b415dee6d4840b">m_misses</a> = 0</td></tr>
+<tr class="separator:a021c760717efef3fc3b415dee6d4840b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a25f6ac369c590a8370270bdc70545171" id="r_a25f6ac369c590a8370270bdc70545171"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a25f6ac369c590a8370270bdc70545171">m_updates</a> = 0</td></tr>
+<tr class="separator:a25f6ac369c590a8370270bdc70545171"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad4cc7113574f71905bc93cc40024b4bd" id="r_ad4cc7113574f71905bc93cc40024b4bd"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad4cc7113574f71905bc93cc40024b4bd">m_resets</a> = 0</td></tr>
+<tr class="separator:ad4cc7113574f71905bc93cc40024b4bd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Triggers when the timestep deviates from its recent average beyond a threshold. </p>
+<ul>
+<li>Maintains a sliding window of recent dt values (size = windowSize).</li>
+<li>check(ctx):<ul>
+<li>If the window is empty, returns false.</li>
+<li>Computes the arithmetic mean of values in the window and compares either:<ul>
+<li>relative: |dt - mean| / mean &gt;= threshold</li>
+<li>absolute: |dt - mean| &gt;= threshold</li>
+</ul>
+</li>
+</ul>
+</li>
+<li>update(ctx): pushes ctx.dt into the fixed-size window (dropping oldest when full).</li>
+</ul>
+<dl class="section user"><dt>Constraints/Errors:</dt><dd><ul>
+<li>threshold must be &gt;= 0.</li>
+<li>If relative==true, threshold must be in [0, 1]. Violations throw std::invalid_argument.</li>
+</ul>
+</dd></dl>
+<dl class="section note"><dt>Note</dt><dd><ul>
+<li>With windowSize==1, the mean is the most recent prior dt.</li>
+<li>Counter fields are mutable to allow updates during const <a class="el" href="#a04598611b0807cad395bdd2fbc41a6c2" title="Evaluate whether the current dt deviates sufficiently from recent average.">check()</a>.</li>
+</ul>
+</dd></dl>
+<p>See also: <a class="el" href="engine__partitioning__trigger_8cpp.html">engine_partitioning_trigger.cpp</a> for exact logic and logging. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a171e6dee7f7d8275b3e8875eaeb0850d" name="a171e6dee7f7d8275b3e8875eaeb0850d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a171e6dee7f7d8275b3e8875eaeb0850d">&#9670;&#160;</a></span>TimestepCollapseTrigger() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::TimestepCollapseTrigger </td>
+          <td>(</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>threshold</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool</td>          <td class="paramname"><span class="paramname"><em>relative</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel explicit">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct with threshold and relative/absolute mode; window size defaults to 1. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">threshold</td><td>Non-negative threshold; if relative, must be in [0, 1]. </td></tr>
+    <tr><td class="paramname">relative</td><td>If true, use relative deviation; otherwise use absolute deviation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::invalid_argument</td><td>on invalid threshold constraints. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="ae47a4f822f92774f6dc780ae74f12066" name="ae47a4f822f92774f6dc780ae74f12066"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae47a4f822f92774f6dc780ae74f12066">&#9670;&#160;</a></span>TimestepCollapseTrigger() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::TimestepCollapseTrigger </td>
+          <td>(</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>threshold</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool</td>          <td class="paramname"><span class="paramname"><em>relative</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t</td>          <td class="paramname"><span class="paramname"><em>windowSize</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel explicit">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct with threshold, mode, and window size. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">threshold</td><td>Non-negative threshold; if relative, must be in [0, 1]. </td></tr>
+    <tr><td class="paramname">relative</td><td>If true, use relative deviation; otherwise use absolute deviation. </td></tr>
+    <tr><td class="paramname">windowSize</td><td>Number of dt samples to average over (&gt;= 1 recommended). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::invalid_argument</td><td>on invalid threshold constraints. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a04598611b0807cad395bdd2fbc41a6c2" name="a04598611b0807cad395bdd2fbc41a6c2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a04598611b0807cad395bdd2fbc41a6c2">&#9670;&#160;</a></span>check()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::check </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate whether the current dt deviates sufficiently from recent average. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">CVODE</a> timestep context providing current dt. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if deviation exceeds the configured threshold; false otherwise.</dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>increments hit/miss counters and may emit trace logs. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a8ba5a942bb61347851030d1eb6bbaa74" name="a8ba5a942bb61347851030d1eb6bbaa74"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8ba5a942bb61347851030d1eb6bbaa74">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::describe </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Textual description including threshold, mode, and window size. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a290e5643eea08726d2fd44a1cd5617d0" name="a290e5643eea08726d2fd44a1cd5617d0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a290e5643eea08726d2fd44a1cd5617d0">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::name </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Stable human-readable name. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a94bb1de08a5ff55e1874f595f8c8965c" name="a94bb1de08a5ff55e1874f595f8c8965c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a94bb1de08a5ff55e1874f595f8c8965c">&#9670;&#160;</a></span>numMisses()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::numMisses </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of false evaluations since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ad2a7c2567b100f97a024f65818ecefed" name="ad2a7c2567b100f97a024f65818ecefed"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad2a7c2567b100f97a024f65818ecefed">&#9670;&#160;</a></span>numTriggers()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::numTriggers </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of true evaluations since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a0fe6af73b11b820561bd4e5552890d4e" name="a0fe6af73b11b820561bd4e5552890d4e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0fe6af73b11b820561bd4e5552890d4e">&#9670;&#160;</a></span>reset()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::reset </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reset counters and clear the dt window. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="af6bff6a484e8729445c26620b489665d" name="af6bff6a484e8729445c26620b489665d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af6bff6a484e8729445c26620b489665d">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::update </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Update sliding window with the most recent dt and increment update counter. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">CVODE</a> timestep context. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a22d8bc7aacbc388108225c26158e918c" name="a22d8bc7aacbc388108225c26158e918c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a22d8bc7aacbc388108225c26158e918c">&#9670;&#160;</a></span>why()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::why </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Structured explanation of the evaluation outcome. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="aff23db33140aa6a5a2ad36eda77b833d" name="aff23db33140aa6a5a2ad36eda77b833d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aff23db33140aa6a5a2ad36eda77b833d">&#9670;&#160;</a></span>m_hits</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_hits = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="abe902b2a42a6451f64497e075b0e0b25" name="abe902b2a42a6451f64497e075b0e0b25"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abe902b2a42a6451f64497e075b0e0b25">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logger used for trace/error diagnostics. </p>
+
+</div>
+</div>
+<a id="a021c760717efef3fc3b415dee6d4840b" name="a021c760717efef3fc3b415dee6d4840b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a021c760717efef3fc3b415dee6d4840b">&#9670;&#160;</a></span>m_misses</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_misses = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aa4162916f562b4d7ea0205d6f3e6f917" name="aa4162916f562b4d7ea0205d6f3e6f917"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa4162916f562b4d7ea0205d6f3e6f917">&#9670;&#160;</a></span>m_relative</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_relative</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>When true, use relative deviation; otherwise absolute deviation. </p>
+
+</div>
+</div>
+<a id="ad4cc7113574f71905bc93cc40024b4bd" name="ad4cc7113574f71905bc93cc40024b4bd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad4cc7113574f71905bc93cc40024b4bd">&#9670;&#160;</a></span>m_resets</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_resets = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab7d86e5c89a848cf238141393fe3a8de" name="ab7d86e5c89a848cf238141393fe3a8de"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab7d86e5c89a848cf238141393fe3a8de">&#9670;&#160;</a></span>m_threshold</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_threshold</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Threshold for absolute or relative deviation. </p>
+
+</div>
+</div>
+<a id="ae18e08a0bd72b68605d64e4d84355f79" name="ae18e08a0bd72b68605d64e4d84355f79"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae18e08a0bd72b68605d64e4d84355f79">&#9670;&#160;</a></span>m_timestep_window</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::deque&lt;double&gt; gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_timestep_window</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Sliding window of recent timesteps (most recent at back). </p>
+
+</div>
+</div>
+<a id="a25f6ac369c590a8370270bdc70545171" name="a25f6ac369c590a8370270bdc70545171"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a25f6ac369c590a8370270bdc70545171">&#9670;&#160;</a></span>m_updates</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_updates = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel mutable">mutable</span><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aa03c13813065f720cf698c240f07d559" name="aa03c13813065f720cf698c240f07d559"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa03c13813065f720cf698c240f07d559">&#9670;&#160;</a></span>m_windowSize</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_windowSize</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of dt samples to maintain in the moving window. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/solver/strategies/triggers/<a class="el" href="engine__partitioning__trigger_8h.html">engine_partitioning_trigger.h</a></li>
+<li>src/lib/solver/strategies/triggers/<a class="el" href="engine__partitioning__trigger_8cpp.html">engine_partitioning_trigger.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger_1_1solver.html">solver</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">CVODE</a></li><li class="navelem"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">TimestepCollapseTrigger</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.js b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.js
new file mode 100644
index 00000000..51386877
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.js
@@ -0,0 +1,22 @@
+var classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger =
+[
+    [ "TimestepCollapseTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a171e6dee7f7d8275b3e8875eaeb0850d", null ],
+    [ "TimestepCollapseTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ae47a4f822f92774f6dc780ae74f12066", null ],
+    [ "check", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a04598611b0807cad395bdd2fbc41a6c2", null ],
+    [ "describe", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a8ba5a942bb61347851030d1eb6bbaa74", null ],
+    [ "name", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a290e5643eea08726d2fd44a1cd5617d0", null ],
+    [ "numMisses", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a94bb1de08a5ff55e1874f595f8c8965c", null ],
+    [ "numTriggers", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad2a7c2567b100f97a024f65818ecefed", null ],
+    [ "reset", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a0fe6af73b11b820561bd4e5552890d4e", null ],
+    [ "update", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#af6bff6a484e8729445c26620b489665d", null ],
+    [ "why", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a22d8bc7aacbc388108225c26158e918c", null ],
+    [ "m_hits", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aff23db33140aa6a5a2ad36eda77b833d", null ],
+    [ "m_logger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#abe902b2a42a6451f64497e075b0e0b25", null ],
+    [ "m_misses", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a021c760717efef3fc3b415dee6d4840b", null ],
+    [ "m_relative", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa4162916f562b4d7ea0205d6f3e6f917", null ],
+    [ "m_resets", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad4cc7113574f71905bc93cc40024b4bd", null ],
+    [ "m_threshold", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ab7d86e5c89a848cf238141393fe3a8de", null ],
+    [ "m_timestep_window", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ae18e08a0bd72b68605d64e4d84355f79", null ],
+    [ "m_updates", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a25f6ac369c590a8370270bdc70545171", null ],
+    [ "m_windowSize", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa03c13813065f720cf698c240f07d559", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.png b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.png
new file mode 100644
index 0000000000000000000000000000000000000000..83608899fabb602a5812e4d746c31bbccd924c15
GIT binary patch
literal 1510
zcmb`HdpOg39LIl@X5y@zQ*MPaO7oyxa$PZ(ewbyVR18a!%cf{<(G%T{(eaxUYI{61
zmAiH3ZrRFGn1e7Q+X-2&N24cG&N_db=Q;nM&mZ5<=ll7-znACpeLbH$$9+9D)O6JV
z0MG!Bx#0moNur34t8P+^I*HDw6i)BB&k6U9jSWROGq;j>ms@UUX-d|<-#sH1ixqjB
zp1?B28ax5->klaA|JY&W;z0mVi3i<WP9!PKKa$3MuvE|TB!(Vb+;}NM7P##WoU@kh
zJj>SS!?1a4Zl5gJu_9LyJJ$C`4ibZu;$0pfol&Z^vPhLMNLFd+1JP}aAAZ7lea$Vi
zU*<`@p_OBIIjm`<Q0iufoULPzWF~8m3+!7pBkweBX<riAIcd4kX_(TkY}<lOEnSof
z-S3Aun#y4Bisnfu=DFIfbIwCFQR9INom=IhQw@np4j=cu{SB#?Sl8;BM8G#(ep(=}
z@4^{SB3u%g(~$@!qiA4ynAgOy=>7GNm#KRB9Z@BSP88>>+{s8DU_W)D*`a2u5#m(U
z{BT31sIiA=H5gW?#ia~59c`-8xi@=>%A{Fz_orSA$q0d$XACOWS@`~J?pL*L>j872
z3Q!Wqie&Va>gHMz^`=Zc%6sG)?(r;v&&-TqeXQ!ip0&tg?L8PpL~$cLt5u#aN9Ryk
z$#cZZ29=0*x*)t|w3&G&uQpbhpGB!)WmO~(gqhzQpzUvKLof@8Ee+V{BwL|Br$GE6
zxTgyB9>WzzI$8<fl!+Cp#n2M<MOt0(6G_q1JKc1z@Y7A@a6L7Cx?}0~3s)OW#v=OD
z+o~m9x<y0eiM(ElRM^>Um==Rx;Fa^Ffmr+93H+O}Z!fwh$y!X#5|3c)@>XXC=sR!6
z2YWu4=gHGaqP0e>em5m9xG8fbx@J#WjBmaEFjwe*sLhI0O0<03G%VduD9#?sVSMfJ
zNcLD*Z2xYcF<91rR2Qx{J029G74h1<fLf9}wvgZ~5n9tGO%pGBK&VGn8P2<)^?;(9
za43yQ!f|U6v`L%9R3uoP(7V1uKDK-^icQL!v~Rmhj?+XY`(fpVUBCAha`b-!zaJ>n
z$3ep~4=z$?FGx`1BBeq91<r!2V6h}tWXn*#w&9fl7;Xl9cVsEOsQbPSe+h_Bx@ZHt
zX19_Jw*U=lTtIxLLkn<1scyQaz!g}kG*k!ZKh&)2mOxVAwk?3*hbTy~>3<Z>ZWukp
zdzIwlFC9RFY9QpT5(X|;8k&KMtBt!@*K3i<L$~0Iy`&?iQ;y*DYeY?F9UDi;cr}y$
zo-vj&>#lQ^<0x}T4nt>Xn_=D<wdPkM+nz9<N&;4Eayj(g^Ml-!Ry)o)<Ws-+gxn>;
zrEg}EwqN2t;#<GGD`ub<-t;f{^a#**IvdlV$b^d{-7T-8N^tPSj{JH-DVjS5vz-s4
z@<*+ehD!v-D3H_#Q=KT^i}Pu!vVN0j?=jG&H4htqcOi*RmIP&Hbf*}cZ(r=xX6X>w
zDjU{8U<w0`8F|L<`|=ty&{03%B+y`NXUoYVA?yoGg8j2_M3(jA*u_51o|y902TO4g
zd(=CJ#;N4E)cef|rgh^ay}lwckyacO)xpo=pEH(ftVP;5SuwOglCvf~a6wO%QW|I=
zXn8&*JQV^4LhV(!1)k04&%r5d8>~t5groe%z&#(5eeCUQb7v8;stx+|SAqfhzM@JP
z1H-iJ#`!Luhra`!L5OQ<lB`6xe{1d*hBhAdKC|O-fUOqO0mgkr(sw|#w%F#z+-?xF
za%^TArg(~nTwU8NA*qbU=amtdRwa+rH}*l_#Aq{c*g7U0lFiCYxJT~IMK;SS(8cV1
zAjfa<nZ&?r6%%|Ka)o4qe}6Y{TLDr57Bm?|$ny6x&BuG8SF}n;Y2g*}8*ddI835gV
K-Kt$fum273z~MFk

literal 0
HcmV?d00001

diff --git a/docs/html/classgridfire_1_1utils_1_1_column-members.html b/docs/html/classgridfire_1_1utils_1_1_column-members.html
new file mode 100644
index 00000000..a64b0dc3
--- /dev/null
+++ b/docs/html/classgridfire_1_1utils_1_1_column-members.html
@@ -0,0 +1,124 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1utils_1_1_column.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::utils::Column&lt; T &gt; Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1utils_1_1_column.html">gridfire::utils::Column&lt; T &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column.html#a7d7e4f4cf6f8e03725afeb9f664321b8">Column</a>(std::string header, const std::vector&lt; T &gt; &amp;data)</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column.html">gridfire::utils::Column&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column.html#a5bd0ad730a684e1a8b583c5c27cca6e8">getCellData</a>(size_t rowIndex) const override</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column.html">gridfire::utils::Column&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column.html#ad6a4f9aee1321e90896e5f4583d7311f">getHeader</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column.html">gridfire::utils::Column&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column.html#a7ff9084a0486fb8b08edfe866480568b">getRowCount</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column.html">gridfire::utils::Column&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column.html#aaa99c4d00c3b79e37f2e73e7c6854758">m_data</a></td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column.html">gridfire::utils::Column&lt; T &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column.html#aaddf58469be3e3fd3bee0f4f660fe9e0">m_header</a></td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column.html">gridfire::utils::Column&lt; T &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column_base.html#a704c1fc03271c14fc9f3da43612a1589">~ColumnBase</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column_base.html">gridfire::utils::ColumnBase</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1utils_1_1_column.html b/docs/html/classgridfire_1_1utils_1_1_column.html
new file mode 100644
index 00000000..83b1c4cb
--- /dev/null
+++ b/docs/html/classgridfire_1_1utils_1_1_column.html
@@ -0,0 +1,324 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::utils::Column&lt; T &gt; Class Template Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1utils_1_1_column.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1utils_1_1_column-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::utils::Column&lt; T &gt; Class Template Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;table_format.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::utils::Column&lt; T &gt;:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="classgridfire_1_1utils_1_1_column.png" usemap="#gridfire::utils::Column_3C_20T_20_3E_map" alt=""/>
+  <map id="gridfire::utils::Column_3C_20T_20_3E_map" name="gridfire::utils::Column_3C_20T_20_3E_map">
+<area href="classgridfire_1_1utils_1_1_column_base.html" alt="gridfire::utils::ColumnBase" shape="rect" coords="0,0,160,24"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a7d7e4f4cf6f8e03725afeb9f664321b8" id="r_a7d7e4f4cf6f8e03725afeb9f664321b8"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7d7e4f4cf6f8e03725afeb9f664321b8">Column</a> (std::string header, const std::vector&lt; T &gt; &amp;data)</td></tr>
+<tr class="separator:a7d7e4f4cf6f8e03725afeb9f664321b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5bd0ad730a684e1a8b583c5c27cca6e8" id="r_a5bd0ad730a684e1a8b583c5c27cca6e8"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5bd0ad730a684e1a8b583c5c27cca6e8">getCellData</a> (size_t rowIndex) const override</td></tr>
+<tr class="separator:a5bd0ad730a684e1a8b583c5c27cca6e8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad6a4f9aee1321e90896e5f4583d7311f" id="r_ad6a4f9aee1321e90896e5f4583d7311f"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad6a4f9aee1321e90896e5f4583d7311f">getHeader</a> () const override</td></tr>
+<tr class="separator:ad6a4f9aee1321e90896e5f4583d7311f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7ff9084a0486fb8b08edfe866480568b" id="r_a7ff9084a0486fb8b08edfe866480568b"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7ff9084a0486fb8b08edfe866480568b">getRowCount</a> () const override</td></tr>
+<tr class="separator:a7ff9084a0486fb8b08edfe866480568b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1utils_1_1_column_base"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1utils_1_1_column_base')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1utils_1_1_column_base.html">gridfire::utils::ColumnBase</a></td></tr>
+<tr class="memitem:a704c1fc03271c14fc9f3da43612a1589 inherit pub_methods_classgridfire_1_1utils_1_1_column_base" id="r_a704c1fc03271c14fc9f3da43612a1589"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1utils_1_1_column_base.html#a704c1fc03271c14fc9f3da43612a1589">~ColumnBase</a> ()=default</td></tr>
+<tr class="separator:a704c1fc03271c14fc9f3da43612a1589 inherit pub_methods_classgridfire_1_1utils_1_1_column_base"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:aaddf58469be3e3fd3bee0f4f660fe9e0" id="r_aaddf58469be3e3fd3bee0f4f660fe9e0"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aaddf58469be3e3fd3bee0f4f660fe9e0">m_header</a></td></tr>
+<tr class="separator:aaddf58469be3e3fd3bee0f4f660fe9e0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aaa99c4d00c3b79e37f2e73e7c6854758" id="r_aaa99c4d00c3b79e37f2e73e7c6854758"><td class="memItemLeft" align="right" valign="top">std::vector&lt; T &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aaa99c4d00c3b79e37f2e73e7c6854758">m_data</a></td></tr>
+<tr class="separator:aaa99c4d00c3b79e37f2e73e7c6854758"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a7d7e4f4cf6f8e03725afeb9f664321b8" name="a7d7e4f4cf6f8e03725afeb9f664321b8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7d7e4f4cf6f8e03725afeb9f664321b8">&#9670;&#160;</a></span>Column()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1utils_1_1_column.html">gridfire::utils::Column</a>&lt; T &gt;::Column </td>
+          <td>(</td>
+          <td class="paramtype">std::string</td>          <td class="paramname"><span class="paramname"><em>header</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; T &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>data</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a5bd0ad730a684e1a8b583c5c27cca6e8" name="a5bd0ad730a684e1a8b583c5c27cca6e8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5bd0ad730a684e1a8b583c5c27cca6e8">&#9670;&#160;</a></span>getCellData()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1utils_1_1_column.html">gridfire::utils::Column</a>&lt; T &gt;::getCellData </td>
+          <td>(</td>
+          <td class="paramtype">size_t</td>          <td class="paramname"><span class="paramname"><em>rowIndex</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1utils_1_1_column_base.html#a5e07c8e33c96ee8095ebefbf9b75cb36">gridfire::utils::ColumnBase</a>.</p>
+
+</div>
+</div>
+<a id="ad6a4f9aee1321e90896e5f4583d7311f" name="ad6a4f9aee1321e90896e5f4583d7311f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad6a4f9aee1321e90896e5f4583d7311f">&#9670;&#160;</a></span>getHeader()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1utils_1_1_column.html">gridfire::utils::Column</a>&lt; T &gt;::getHeader </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1utils_1_1_column_base.html#a4dd5f1409d3190eab9ba07eb6e611248">gridfire::utils::ColumnBase</a>.</p>
+
+</div>
+</div>
+<a id="a7ff9084a0486fb8b08edfe866480568b" name="a7ff9084a0486fb8b08edfe866480568b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7ff9084a0486fb8b08edfe866480568b">&#9670;&#160;</a></span>getRowCount()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1utils_1_1_column.html">gridfire::utils::Column</a>&lt; T &gt;::getRowCount </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1utils_1_1_column_base.html#ab6e4cb14c8a0ad7b6b9ad0fbde766cba">gridfire::utils::ColumnBase</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="aaa99c4d00c3b79e37f2e73e7c6854758" name="aaa99c4d00c3b79e37f2e73e7c6854758"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaa99c4d00c3b79e37f2e73e7c6854758">&#9670;&#160;</a></span>m_data</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;T&gt; <a class="el" href="classgridfire_1_1utils_1_1_column.html">gridfire::utils::Column</a>&lt; T &gt;::m_data</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aaddf58469be3e3fd3bee0f4f660fe9e0" name="aaddf58469be3e3fd3bee0f4f660fe9e0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaddf58469be3e3fd3bee0f4f660fe9e0">&#9670;&#160;</a></span>m_header</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1utils_1_1_column.html">gridfire::utils::Column</a>&lt; T &gt;::m_header</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel private">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/utils/<a class="el" href="table__format_8h.html">table_format.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1utils.html">utils</a></li><li class="navelem"><a class="el" href="classgridfire_1_1utils_1_1_column.html">Column</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1utils_1_1_column.js b/docs/html/classgridfire_1_1utils_1_1_column.js
new file mode 100644
index 00000000..6871504a
--- /dev/null
+++ b/docs/html/classgridfire_1_1utils_1_1_column.js
@@ -0,0 +1,9 @@
+var classgridfire_1_1utils_1_1_column =
+[
+    [ "Column", "classgridfire_1_1utils_1_1_column.html#a7d7e4f4cf6f8e03725afeb9f664321b8", null ],
+    [ "getCellData", "classgridfire_1_1utils_1_1_column.html#a5bd0ad730a684e1a8b583c5c27cca6e8", null ],
+    [ "getHeader", "classgridfire_1_1utils_1_1_column.html#ad6a4f9aee1321e90896e5f4583d7311f", null ],
+    [ "getRowCount", "classgridfire_1_1utils_1_1_column.html#a7ff9084a0486fb8b08edfe866480568b", null ],
+    [ "m_data", "classgridfire_1_1utils_1_1_column.html#aaa99c4d00c3b79e37f2e73e7c6854758", null ],
+    [ "m_header", "classgridfire_1_1utils_1_1_column.html#aaddf58469be3e3fd3bee0f4f660fe9e0", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1utils_1_1_column.png b/docs/html/classgridfire_1_1utils_1_1_column.png
new file mode 100644
index 0000000000000000000000000000000000000000..cee6f79fc811ac423eb5f1e04b9dcf98068df3bf
GIT binary patch
literal 738
zcmeAS@N?(olHy`uVBq!ia0vp^3xGI)gBeJ!Z0=(NQqloFA+G=b{|7Q(y!l$%e`vXd
zfo6fk^fNCWJa_;UH$5A+1SrQ@666=m0OW&#In(Sb3=B-Uo-U3d6^w7^zU+IVz|+#*
zb!FA}`bWO)r)7NA4!`5Mbg4*HQQ&i;^e_Fs#};8?e3N3rr6;JQZ(;N-a;tTio`3GB
zn5UW5?>!Suo}G(-+^3?w_jvD}`z{;IO+B;s?UyUv`uQ~DgB`nBcs5qW2ftYN_2~9}
zsWHF*SuA3Ivfsn5Y4(SetUT);n^vD_5O<Ie*0J7p-g0%{pOiAuvLCF|YTXaad(F2X
zv{L)Zx!9|R7&b7TyXfV&k3U0uS8TER(eDjvM^Abhp1;fyW*X75{y`PnjJwyRHwQQ0
zyz1NKyEUxu_tK{x+5XuE?~|$-#1fv)>p7YiJm;Cu?oEZ)*B`8q;VJw0w$o*j{rYWe
zo<)kHnsF2I|Af0w+P{|9W0LW$1{KT2!XGU9k`oyZ#9!rR2)p*GVg2<-EvuR5)np6n
z@$V=%WH^(_%ygi~Oo8D{2C<BP_72bIL`N1(+Op1Ufy&toX0J;<yBZ!|{rxN^$1`a0
z=JT^vlHcFGzGL!|^IX+olel`7Zp@CFWO_fof7h*_Ps59^$WCW;UUTod$gXV9k8ATK
z)A!l;y<q&QKdJwLT8)-x>oH(J&d`V`%b8ysHuuZPH(GB#aG&|{Z^s5bq;SldUZ^uK
zI7y!2mQvo~o1I5w6Q({}C93pCrzw<I?4kCKf1WJKuHUmZOil`38#?W=p5DeeDQ`1*
zpT*|zA7EN@XY$4yxn0U>I&EKE<sz8t{?4c@NbtPmzjCFcXOySeQSX1+{r_I6yu7}Z
pQ8m*|I$%;-36s_HJBNNT^YFD?+~$1h5im6}c)I$ztaD0e0ss<IS3>{*

literal 0
HcmV?d00001

diff --git a/docs/html/classgridfire_1_1utils_1_1_column_base-members.html b/docs/html/classgridfire_1_1utils_1_1_column_base-members.html
new file mode 100644
index 00000000..ed50ceb0
--- /dev/null
+++ b/docs/html/classgridfire_1_1utils_1_1_column_base-members.html
@@ -0,0 +1,121 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1utils_1_1_column_base.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::utils::ColumnBase Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1utils_1_1_column_base.html">gridfire::utils::ColumnBase</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column_base.html#a5e07c8e33c96ee8095ebefbf9b75cb36">getCellData</a>(size_t rowIndex) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column_base.html">gridfire::utils::ColumnBase</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column_base.html#a4dd5f1409d3190eab9ba07eb6e611248">getHeader</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column_base.html">gridfire::utils::ColumnBase</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column_base.html#ab6e4cb14c8a0ad7b6b9ad0fbde766cba">getRowCount</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column_base.html">gridfire::utils::ColumnBase</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column_base.html#a704c1fc03271c14fc9f3da43612a1589">~ColumnBase</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1_column_base.html">gridfire::utils::ColumnBase</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1utils_1_1_column_base.html b/docs/html/classgridfire_1_1utils_1_1_column_base.html
new file mode 100644
index 00000000..bd58b49d
--- /dev/null
+++ b/docs/html/classgridfire_1_1utils_1_1_column_base.html
@@ -0,0 +1,252 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::utils::ColumnBase Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('classgridfire_1_1utils_1_1_column_base.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1utils_1_1_column_base-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::utils::ColumnBase Class Reference<span class="mlabels"><span class="mlabel abstract">abstract</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;table_format.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::utils::ColumnBase:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="classgridfire_1_1utils_1_1_column_base.png" usemap="#gridfire::utils::ColumnBase_map" alt=""/>
+  <map id="gridfire::utils::ColumnBase_map" name="gridfire::utils::ColumnBase_map">
+<area href="classgridfire_1_1utils_1_1_column.html" alt="gridfire::utils::Column&lt; T &gt;" shape="rect" coords="0,56,160,80"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a704c1fc03271c14fc9f3da43612a1589" id="r_a704c1fc03271c14fc9f3da43612a1589"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a704c1fc03271c14fc9f3da43612a1589">~ColumnBase</a> ()=default</td></tr>
+<tr class="separator:a704c1fc03271c14fc9f3da43612a1589"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5e07c8e33c96ee8095ebefbf9b75cb36" id="r_a5e07c8e33c96ee8095ebefbf9b75cb36"><td class="memItemLeft" align="right" valign="top">virtual std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5e07c8e33c96ee8095ebefbf9b75cb36">getCellData</a> (size_t rowIndex) const =0</td></tr>
+<tr class="separator:a5e07c8e33c96ee8095ebefbf9b75cb36"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4dd5f1409d3190eab9ba07eb6e611248" id="r_a4dd5f1409d3190eab9ba07eb6e611248"><td class="memItemLeft" align="right" valign="top">virtual std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4dd5f1409d3190eab9ba07eb6e611248">getHeader</a> () const =0</td></tr>
+<tr class="separator:a4dd5f1409d3190eab9ba07eb6e611248"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab6e4cb14c8a0ad7b6b9ad0fbde766cba" id="r_ab6e4cb14c8a0ad7b6b9ad0fbde766cba"><td class="memItemLeft" align="right" valign="top">virtual size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab6e4cb14c8a0ad7b6b9ad0fbde766cba">getRowCount</a> () const =0</td></tr>
+<tr class="separator:ab6e4cb14c8a0ad7b6b9ad0fbde766cba"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a704c1fc03271c14fc9f3da43612a1589" name="a704c1fc03271c14fc9f3da43612a1589"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a704c1fc03271c14fc9f3da43612a1589">&#9670;&#160;</a></span>~ColumnBase()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual gridfire::utils::ColumnBase::~ColumnBase </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel virtual">virtual</span><span class="mlabel default">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a5e07c8e33c96ee8095ebefbf9b75cb36" name="a5e07c8e33c96ee8095ebefbf9b75cb36"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5e07c8e33c96ee8095ebefbf9b75cb36">&#9670;&#160;</a></span>getCellData()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::string gridfire::utils::ColumnBase::getCellData </td>
+          <td>(</td>
+          <td class="paramtype">size_t</td>          <td class="paramname"><span class="paramname"><em>rowIndex</em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1utils_1_1_column.html#a5bd0ad730a684e1a8b583c5c27cca6e8">gridfire::utils::Column&lt; T &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a4dd5f1409d3190eab9ba07eb6e611248" name="a4dd5f1409d3190eab9ba07eb6e611248"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4dd5f1409d3190eab9ba07eb6e611248">&#9670;&#160;</a></span>getHeader()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::string gridfire::utils::ColumnBase::getHeader </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1utils_1_1_column.html#ad6a4f9aee1321e90896e5f4583d7311f">gridfire::utils::Column&lt; T &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ab6e4cb14c8a0ad7b6b9ad0fbde766cba" name="ab6e4cb14c8a0ad7b6b9ad0fbde766cba"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab6e4cb14c8a0ad7b6b9ad0fbde766cba">&#9670;&#160;</a></span>getRowCount()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual size_t gridfire::utils::ColumnBase::getRowCount </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1utils_1_1_column.html#a7ff9084a0486fb8b08edfe866480568b">gridfire::utils::Column&lt; T &gt;</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/utils/<a class="el" href="table__format_8h.html">table_format.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1utils.html">utils</a></li><li class="navelem"><a class="el" href="classgridfire_1_1utils_1_1_column_base.html">ColumnBase</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1utils_1_1_column_base.js b/docs/html/classgridfire_1_1utils_1_1_column_base.js
new file mode 100644
index 00000000..43fb7cd6
--- /dev/null
+++ b/docs/html/classgridfire_1_1utils_1_1_column_base.js
@@ -0,0 +1,7 @@
+var classgridfire_1_1utils_1_1_column_base =
+[
+    [ "~ColumnBase", "classgridfire_1_1utils_1_1_column_base.html#a704c1fc03271c14fc9f3da43612a1589", null ],
+    [ "getCellData", "classgridfire_1_1utils_1_1_column_base.html#a5e07c8e33c96ee8095ebefbf9b75cb36", null ],
+    [ "getHeader", "classgridfire_1_1utils_1_1_column_base.html#a4dd5f1409d3190eab9ba07eb6e611248", null ],
+    [ "getRowCount", "classgridfire_1_1utils_1_1_column_base.html#ab6e4cb14c8a0ad7b6b9ad0fbde766cba", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1utils_1_1_column_base.png b/docs/html/classgridfire_1_1utils_1_1_column_base.png
new file mode 100644
index 0000000000000000000000000000000000000000..7fe41b1a21057fbde46917c9d30a14ef586594c1
GIT binary patch
literal 743
zcmeAS@N?(olHy`uVBq!ia0vp^3xGI)gBeJ!Z0=(NQqloFA+G=b{|7Q(y!l$%e`vXd
zfo6fk^fNCWJa_;UH$5A+1SrQ@666=m0OW&#In(Sb3=B*~o-U3d6^w7^zFzlOfv2V2
zan-ZG^D8DZ9E_P{=KWn}$<j|IstrFk@c!j~K4*4h!6cLQVhdDyGZ?)tb^L1hc=um{
z-d2^B7q5x?OxpPOhv_?&m6r<rR9^;d7ks0udot?9dUx5ke?GB&*teUdXXCB?=P$_q
z_Re=cy@T&>rVGEu8H-vM^TJiEJ?k!S|5(5z$580A<;{(M=ORllO}!a=;~{&*x48_}
z>#Q5Xo-Pj9T^7o1-oRVXckShq_l&u&+pFI#`C+@j^W)1UG0ziOR!iv|3NNr_KJ)H%
z^Uak9-@Nke^4%KN_j~D6m2CfPgZW9-jA98-XZjq?3$9sLIq%f5*!^smOACs-?%(s6
z^yPC_cEBXHpoxzp|4+;R|4QZM_N@%6nJ(M`liap2T0OsWgsEZuD^>>M?6L#bvx^Sh
zWHjHmlXE$H%yJ2aV_O&)6I{3j7~F_v{Fh(w{a$^r{`<ZE7d`MSiqmzNBy*8T<)mOK
zV{Dzp^eB~^8LzqBF3q@Y*K0j#&o#THGrl^qRC`a}BKGTbpu6?{KO7&jV%VSo8tnxP
zPz!FP0M+so+r@6f@W|=nrsUt&=~pL)r<EtR%O@QB{`A-`q_7O#-IM&$+H@YnEv3A}
zH#?75AJ94*s%;|gwqeylr5e`j_MHi<Uc~X11?8;TdaB6ksOmK3wYF;y)^xpPjcAyf
zZX~+fxA2h9(Sma)n6nR@Uq6#wT+H*|lvz?LCugPv+bG|E8!zkmZ<m;YXI}>6q$eF_
g4)6EQkEmzR;%|PkTfgTwFiA3ay85}Sb4q9e041tbuK)l5

literal 0
HcmV?d00001

diff --git a/docs/html/concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html b/docs/html/concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html
index 661f827c..da277047 100644
--- a/docs/html/concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html
+++ b/docs/html/concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html
@@ -105,7 +105,7 @@ $(function(){initNavTree('concept_0d01202202330135505230426332013616500220016001
 <h2 class="groupheader">Concept definition</h2>
 <div class="fragment"><div class="line"><span class="keyword">template</span>&lt;<span class="keyword">typename</span> T&gt;</div>
 <div class="line"><span class="keyword">concept </span>@012022023301355052304263320136165002200160012126::<a class="code hl_concept" href="concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html">IsDynamicEngine</a> =  std::is_base_of_v&lt;gridfire::DynamicEngine, T&gt;</div>
-<div class="ttc" id="aconcept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine_html"><div class="ttname"><a href="concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html">@012022023301355052304263320136165002200160012126::IsDynamicEngine</a></div><div class="ttdef"><b>Definition</b> bindings.cpp:18</div></div>
+<div class="ttc" id="aconcept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine_html"><div class="ttname"><a href="concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html">@012022023301355052304263320136165002200160012126::IsDynamicEngine</a></div><div class="ttdef"><b>Definition</b> bindings.cpp:16</div></div>
 </div><!-- fragment --></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/construction_8cpp.html b/docs/html/construction_8cpp.html
index 052b473c..61a56575 100644
--- a/docs/html/construction_8cpp.html
+++ b/docs/html/construction_8cpp.html
@@ -102,14 +102,17 @@ $(function(){initNavTree('construction_8cpp.html',''); initResizable(true); });
   <div class="summary">
 <a href="#nested-classes">Classes</a> &#124;
 <a href="#namespaces">Namespaces</a> &#124;
-<a href="#typedef-members">Typedefs</a> &#124;
 <a href="#func-members">Functions</a>  </div>
   <div class="headertitle"><div class="title">construction.cpp File Reference</div></div>
 </div><!--header-->
 <div class="contents">
 <div class="textblock"><code>#include &quot;<a class="el" href="construction_8h.html">gridfire/engine/procedures/construction.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="weak__interpolator_8h.html">gridfire/reaction/weak/weak_interpolator.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="weak_8h.html">gridfire/reaction/weak/weak.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="weak__types_8h.html">gridfire/reaction/weak/weak_types.h</a>&quot;</code><br />
 <code>#include &lt;ranges&gt;</code><br />
 <code>#include &lt;stdexcept&gt;</code><br />
+<code>#include &lt;memory&gt;</code><br />
 <code>#include &quot;<a class="el" href="reaction_8h.html">gridfire/reaction/reaction.h</a>&quot;</code><br />
 <code>#include &quot;<a class="el" href="reaclib_8h.html">gridfire/reaction/reaclib.h</a>&quot;</code><br />
 <code>#include &quot;fourdst/composition/composition.h&quot;</code><br />
@@ -119,6 +122,8 @@ $(function(){initNavTree('construction_8cpp.html',''); initResizable(true); });
 </div><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
 Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_reaction_set.html">gridfire::ReactionSet</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_reaction.html">gridfire::Reaction</a></td></tr>
 <tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Represents a single nuclear reaction from a specific data source.  <a href="classgridfire_1_1_reaction.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -128,19 +133,10 @@ Namespaces</h2></td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="typedef-members" name="typedef-members"></a>
-Typedefs</h2></td></tr>
-<tr class="memitem:aa86f08712565f278adacc7cd2361eb31" id="r_aa86f08712565f278adacc7cd2361eb31"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#aa86f08712565f278adacc7cd2361eb31">gridfire::LogicalReactionSet</a></td></tr>
-<tr class="memdesc:aa86f08712565f278adacc7cd2361eb31"><td class="mdescLeft">&#160;</td><td class="mdescRight">A set of logical reactions.  <br /></td></tr>
-<tr class="separator:aa86f08712565f278adacc7cd2361eb31"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad838ce3fb6cc02c3fd90b924a0dd91b1" id="r_ad838ce3fb6cc02c3fd90b924a0dd91b1"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#ad838ce3fb6cc02c3fd90b924a0dd91b1">gridfire::ReactionSet</a></td></tr>
-<tr class="memdesc:ad838ce3fb6cc02c3fd90b924a0dd91b1"><td class="mdescLeft">&#160;</td><td class="mdescRight">A set of reactions, typically from a single source like REACLIB.  <br /></td></tr>
-<tr class="separator:ad838ce3fb6cc02c3fd90b924a0dd91b1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:a745c6568723947f8e1ff874c9d3f4733" id="r_a745c6568723947f8e1ff874c9d3f4733"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">LogicalReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#a745c6568723947f8e1ff874c9d3f4733">gridfire::build_reaclib_nuclear_network</a> (const Composition &amp;composition, <a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a> maxLayers, bool reverse)</td></tr>
-<tr class="separator:a745c6568723947f8e1ff874c9d3f4733"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a58a036e8883e75a8abd3e18798563f71" id="r_a58a036e8883e75a8abd3e18798563f71"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#a58a036e8883e75a8abd3e18798563f71">gridfire::build_nuclear_network</a> (const Composition &amp;composition, const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">rates::weak::WeakRateInterpolator</a> &amp;weak_interpolator, <a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a> maxLayers, bool reverse_reaclib)</td></tr>
+<tr class="separator:a58a036e8883e75a8abd3e18798563f71"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/construction_8cpp.js b/docs/html/construction_8cpp.js
index 9ad363f5..51520520 100644
--- a/docs/html/construction_8cpp.js
+++ b/docs/html/construction_8cpp.js
@@ -1,7 +1,6 @@
 var construction_8cpp =
 [
+    [ "gridfire::ReactionSet", "classgridfire_1_1_reaction_set.html", "classgridfire_1_1_reaction_set" ],
     [ "gridfire::Reaction", "classgridfire_1_1_reaction.html", "classgridfire_1_1_reaction" ],
-    [ "gridfire::LogicalReactionSet", "namespacegridfire.html#aa86f08712565f278adacc7cd2361eb31", null ],
-    [ "gridfire::ReactionSet", "namespacegridfire.html#ad838ce3fb6cc02c3fd90b924a0dd91b1", null ],
-    [ "gridfire::build_reaclib_nuclear_network", "namespacegridfire.html#a745c6568723947f8e1ff874c9d3f4733", null ]
+    [ "gridfire::build_nuclear_network", "namespacegridfire.html#a58a036e8883e75a8abd3e18798563f71", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/construction_8h.html b/docs/html/construction_8h.html
index 0b6dd189..3aecabd2 100644
--- a/docs/html/construction_8h.html
+++ b/docs/html/construction_8h.html
@@ -109,6 +109,7 @@ $(function(){initNavTree('construction_8h.html',''); initResizable(true); });
 <code>#include &quot;<a class="el" href="building_8h.html">gridfire/engine/types/building.h</a>&quot;</code><br />
 <code>#include &quot;fourdst/composition/composition.h&quot;</code><br />
 <code>#include &lt;variant&gt;</code><br />
+<code>#include &quot;<a class="el" href="weak__interpolator_8h.html">gridfire/reaction/weak/weak_interpolator.h</a>&quot;</code><br />
 </div><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
 Namespaces</h2></td></tr>
@@ -117,9 +118,9 @@ Namespaces</h2></td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:aedddb89e400a6111f69bfe0c3fd4214e" id="r_aedddb89e400a6111f69bfe0c3fd4214e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#aedddb89e400a6111f69bfe0c3fd4214e">gridfire::build_reaclib_nuclear_network</a> (const fourdst::composition::Composition &amp;composition, <a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a> maxLayers=<a class="el" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a>, bool reverse=false)</td></tr>
-<tr class="memdesc:aedddb89e400a6111f69bfe0c3fd4214e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Builds a nuclear reaction network from the Reaclib library based on an initial composition.  <br /></td></tr>
-<tr class="separator:aedddb89e400a6111f69bfe0c3fd4214e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a384323338f13166d87c7ac047434bd38" id="r_a384323338f13166d87c7ac047434bd38"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#a384323338f13166d87c7ac047434bd38">gridfire::build_reaclib_nuclear_network</a> (const fourdst::composition::Composition &amp;composition, const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">rates::weak::WeakRateInterpolator</a> &amp;weakInterpolator, <a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a> maxLayers=<a class="el" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a>, bool reverse=false)</td></tr>
+<tr class="memdesc:a384323338f13166d87c7ac047434bd38"><td class="mdescLeft">&#160;</td><td class="mdescRight">Builds a nuclear reaction network from the Reaclib library based on an initial composition.  <br /></td></tr>
+<tr class="separator:a384323338f13166d87c7ac047434bd38"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/construction_8h.js b/docs/html/construction_8h.js
index 72543262..4fec1e51 100644
--- a/docs/html/construction_8h.js
+++ b/docs/html/construction_8h.js
@@ -1,4 +1,4 @@
 var construction_8h =
 [
-    [ "gridfire::build_reaclib_nuclear_network", "namespacegridfire.html#aedddb89e400a6111f69bfe0c3fd4214e", null ]
+    [ "gridfire::build_reaclib_nuclear_network", "namespacegridfire.html#a384323338f13166d87c7ac047434bd38", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/dir_230a420a279f78b45ea47b2d650bf1a7.html b/docs/html/dir_230a420a279f78b45ea47b2d650bf1a7.html
new file mode 100644
index 00000000..d0a7d598
--- /dev/null
+++ b/docs/html/dir_230a420a279f78b45ea47b2d650bf1a7.html
@@ -0,0 +1,126 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/solver/strategies Directory Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('dir_230a420a279f78b45ea47b2d650bf1a7.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">strategies Directory Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="subdirs" name="subdirs"></a>
+Directories</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_3c6e26120bd25666a475751afc8a34bc.html">triggers</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="files" name="files"></a>
+Files</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="_c_v_o_d_e__solver__strategy_8h.html">CVODE_solver_strategy.h</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html">solver</a></li><li class="navelem"><a class="el" href="dir_230a420a279f78b45ea47b2d650bf1a7.html">strategies</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/dir_230a420a279f78b45ea47b2d650bf1a7.js b/docs/html/dir_230a420a279f78b45ea47b2d650bf1a7.js
new file mode 100644
index 00000000..663347c5
--- /dev/null
+++ b/docs/html/dir_230a420a279f78b45ea47b2d650bf1a7.js
@@ -0,0 +1,5 @@
+var dir_230a420a279f78b45ea47b2d650bf1a7 =
+[
+    [ "triggers", "dir_3c6e26120bd25666a475751afc8a34bc.html", "dir_3c6e26120bd25666a475751afc8a34bc" ],
+    [ "CVODE_solver_strategy.h", "_c_v_o_d_e__solver__strategy_8h.html", "_c_v_o_d_e__solver__strategy_8h" ]
+];
\ No newline at end of file
diff --git a/docs/html/dir_3626e0c0e3c5d7812d6b277dfa4ec364.html b/docs/html/dir_3626e0c0e3c5d7812d6b277dfa4ec364.html
index 4cfd119a..94e0ff27 100644
--- a/docs/html/dir_3626e0c0e3c5d7812d6b277dfa4ec364.html
+++ b/docs/html/dir_3626e0c0e3c5d7812d6b277dfa4ec364.html
@@ -111,6 +111,8 @@ Directories</h2></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_9f35e0f3e3878d201f80e9b6c966a769.html">expectations</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_f4383b1846ef599868e873d917f1344c.html">interfaces</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_1c671bae89ad45c4f6571bd7c3fca7f2.html">io</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_1d1d50ce0d70b163d7d102a960190628.html">partition</a></td></tr>
@@ -121,6 +123,8 @@ Directories</h2></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html">solver</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_6ccae78e9032a1b4db4873aea5f3b43d.html">trigger</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_8e34b6fea5a3d13256b367f27bc2135d.html">utils</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
diff --git a/docs/html/dir_3626e0c0e3c5d7812d6b277dfa4ec364.js b/docs/html/dir_3626e0c0e3c5d7812d6b277dfa4ec364.js
index 0d54afcf..6f468ae9 100644
--- a/docs/html/dir_3626e0c0e3c5d7812d6b277dfa4ec364.js
+++ b/docs/html/dir_3626e0c0e3c5d7812d6b277dfa4ec364.js
@@ -3,11 +3,13 @@ var dir_3626e0c0e3c5d7812d6b277dfa4ec364 =
     [ "engine", "dir_aff155d61c3b73b9ab7dcdc908c4d49e.html", "dir_aff155d61c3b73b9ab7dcdc908c4d49e" ],
     [ "exceptions", "dir_cd87a60aa1dbf4ee960e0533fd7a9743.html", "dir_cd87a60aa1dbf4ee960e0533fd7a9743" ],
     [ "expectations", "dir_9f35e0f3e3878d201f80e9b6c966a769.html", "dir_9f35e0f3e3878d201f80e9b6c966a769" ],
+    [ "interfaces", "dir_f4383b1846ef599868e873d917f1344c.html", "dir_f4383b1846ef599868e873d917f1344c" ],
     [ "io", "dir_1c671bae89ad45c4f6571bd7c3fca7f2.html", "dir_1c671bae89ad45c4f6571bd7c3fca7f2" ],
     [ "partition", "dir_1d1d50ce0d70b163d7d102a960190628.html", "dir_1d1d50ce0d70b163d7d102a960190628" ],
     [ "reaction", "dir_f2d7b0c77cb2532170ac94ead6e4ba70.html", "dir_f2d7b0c77cb2532170ac94ead6e4ba70" ],
     [ "screening", "dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html", "dir_ad59de2d6f32552fa0ecb4acca2fbb0b" ],
     [ "solver", "dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html", "dir_e2a8863ee8e7cd9122c04bdba1c35a3b" ],
+    [ "trigger", "dir_6ccae78e9032a1b4db4873aea5f3b43d.html", "dir_6ccae78e9032a1b4db4873aea5f3b43d" ],
     [ "utils", "dir_8e34b6fea5a3d13256b367f27bc2135d.html", "dir_8e34b6fea5a3d13256b367f27bc2135d" ],
     [ "network.h", "network_8h.html", "network_8h" ]
 ];
\ No newline at end of file
diff --git a/docs/html/dir_3c6e26120bd25666a475751afc8a34bc.html b/docs/html/dir_3c6e26120bd25666a475751afc8a34bc.html
new file mode 100644
index 00000000..e98f44d2
--- /dev/null
+++ b/docs/html/dir_3c6e26120bd25666a475751afc8a34bc.html
@@ -0,0 +1,122 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/solver/strategies/triggers Directory Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('dir_3c6e26120bd25666a475751afc8a34bc.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">triggers Directory Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="files" name="files"></a>
+Files</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="engine__partitioning__trigger_8h.html">engine_partitioning_trigger.h</a></td></tr>
+<tr class="memdesc:engine__partitioning__trigger_8h"><td class="mdescLeft">&#160;</td><td class="mdescRight">CVODE-specific triggers that decide when to (re)partition the reaction network engine. <br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html">solver</a></li><li class="navelem"><a class="el" href="dir_230a420a279f78b45ea47b2d650bf1a7.html">strategies</a></li><li class="navelem"><a class="el" href="dir_3c6e26120bd25666a475751afc8a34bc.html">triggers</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/dir_3c6e26120bd25666a475751afc8a34bc.js b/docs/html/dir_3c6e26120bd25666a475751afc8a34bc.js
new file mode 100644
index 00000000..e4020915
--- /dev/null
+++ b/docs/html/dir_3c6e26120bd25666a475751afc8a34bc.js
@@ -0,0 +1,4 @@
+var dir_3c6e26120bd25666a475751afc8a34bc =
+[
+    [ "engine_partitioning_trigger.h", "engine__partitioning__trigger_8h.html", "engine__partitioning__trigger_8h" ]
+];
\ No newline at end of file
diff --git a/docs/html/dir_3cc0b3e3c66436f74054a789a4a47fbc.html b/docs/html/dir_3cc0b3e3c66436f74054a789a4a47fbc.html
index e9b88d55..490a60b5 100644
--- a/docs/html/dir_3cc0b3e3c66436f74054a789a4a47fbc.html
+++ b/docs/html/dir_3cc0b3e3c66436f74054a789a4a47fbc.html
@@ -105,6 +105,8 @@ $(function(){initNavTree('dir_3cc0b3e3c66436f74054a789a4a47fbc.html',''); initRe
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="subdirs" name="subdirs"></a>
 Directories</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_c99e86cd0291aa23d2204e664fe571c1.html">diagnostics</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_43d540904cac5d711ae55af9d63e6471.html">procedures</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_e87948a39c0c6c3f66d9f5f967ab86bd.html">views</a></td></tr>
diff --git a/docs/html/dir_3cc0b3e3c66436f74054a789a4a47fbc.js b/docs/html/dir_3cc0b3e3c66436f74054a789a4a47fbc.js
index 3dc56580..08bf5704 100644
--- a/docs/html/dir_3cc0b3e3c66436f74054a789a4a47fbc.js
+++ b/docs/html/dir_3cc0b3e3c66436f74054a789a4a47fbc.js
@@ -1,5 +1,6 @@
 var dir_3cc0b3e3c66436f74054a789a4a47fbc =
 [
+    [ "diagnostics", "dir_c99e86cd0291aa23d2204e664fe571c1.html", "dir_c99e86cd0291aa23d2204e664fe571c1" ],
     [ "procedures", "dir_43d540904cac5d711ae55af9d63e6471.html", "dir_43d540904cac5d711ae55af9d63e6471" ],
     [ "views", "dir_e87948a39c0c6c3f66d9f5f967ab86bd.html", "dir_e87948a39c0c6c3f66d9f5f967ab86bd" ],
     [ "engine_approx8.cpp", "engine__approx8_8cpp.html", "engine__approx8_8cpp" ],
diff --git a/docs/html/dir_4fd0dc9a50f7a53e22cb356c650f915e.html b/docs/html/dir_4fd0dc9a50f7a53e22cb356c650f915e.html
index 2455ce33..73d1ea11 100644
--- a/docs/html/dir_4fd0dc9a50f7a53e22cb356c650f915e.html
+++ b/docs/html/dir_4fd0dc9a50f7a53e22cb356c650f915e.html
@@ -103,9 +103,9 @@ $(function(){initNavTree('dir_4fd0dc9a50f7a53e22cb356c650f915e.html',''); initRe
 </div><!--header-->
 <div class="contents">
 <table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="files" name="files"></a>
-Files</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="solver_8cpp.html">solver.cpp</a></td></tr>
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="subdirs" name="subdirs"></a>
+Directories</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_b0553efdd4ad7f265c0580564941af0c.html">strategies</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 </div><!-- contents -->
diff --git a/docs/html/dir_4fd0dc9a50f7a53e22cb356c650f915e.js b/docs/html/dir_4fd0dc9a50f7a53e22cb356c650f915e.js
index 78bae7d6..b8aa3e6a 100644
--- a/docs/html/dir_4fd0dc9a50f7a53e22cb356c650f915e.js
+++ b/docs/html/dir_4fd0dc9a50f7a53e22cb356c650f915e.js
@@ -1,4 +1,4 @@
 var dir_4fd0dc9a50f7a53e22cb356c650f915e =
 [
-    [ "solver.cpp", "solver_8cpp.html", null ]
+    [ "strategies", "dir_b0553efdd4ad7f265c0580564941af0c.html", "dir_b0553efdd4ad7f265c0580564941af0c" ]
 ];
\ No newline at end of file
diff --git a/docs/html/dir_67aa14af464fbd247881f6980be7deb5.html b/docs/html/dir_67aa14af464fbd247881f6980be7deb5.html
new file mode 100644
index 00000000..cdc4bf8f
--- /dev/null
+++ b/docs/html/dir_67aa14af464fbd247881f6980be7deb5.html
@@ -0,0 +1,128 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/reaction/weak Directory Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('dir_67aa14af464fbd247881f6980be7deb5.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">weak Directory Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="files" name="files"></a>
+Files</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="weak_8h.html">weak.h</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="weak__interpolator_8h.html">weak_interpolator.h</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="weak__rate__library_8h.html">weak_rate_library.h</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="weak__types_8h.html">weak_types.h</a></td></tr>
+<tr class="memdesc:weak__types_8h"><td class="mdescLeft">&#160;</td><td class="mdescRight">Plain data structures and enums for weak reaction tables, interpolation payloads, and errors. <br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_f2d7b0c77cb2532170ac94ead6e4ba70.html">reaction</a></li><li class="navelem"><a class="el" href="dir_67aa14af464fbd247881f6980be7deb5.html">weak</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/dir_67aa14af464fbd247881f6980be7deb5.js b/docs/html/dir_67aa14af464fbd247881f6980be7deb5.js
new file mode 100644
index 00000000..1bad7420
--- /dev/null
+++ b/docs/html/dir_67aa14af464fbd247881f6980be7deb5.js
@@ -0,0 +1,7 @@
+var dir_67aa14af464fbd247881f6980be7deb5 =
+[
+    [ "weak.h", "weak_8h.html", "weak_8h" ],
+    [ "weak_interpolator.h", "weak__interpolator_8h.html", "weak__interpolator_8h" ],
+    [ "weak_rate_library.h", "weak__rate__library_8h.html", "weak__rate__library_8h" ],
+    [ "weak_types.h", "weak__types_8h.html", "weak__types_8h" ]
+];
\ No newline at end of file
diff --git a/docs/html/dir_6ccae78e9032a1b4db4873aea5f3b43d.html b/docs/html/dir_6ccae78e9032a1b4db4873aea5f3b43d.html
new file mode 100644
index 00000000..cf73e40a
--- /dev/null
+++ b/docs/html/dir_6ccae78e9032a1b4db4873aea5f3b43d.html
@@ -0,0 +1,132 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/trigger Directory Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('dir_6ccae78e9032a1b4db4873aea5f3b43d.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">trigger Directory Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="subdirs" name="subdirs"></a>
+Directories</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_d2ba15782ddae84c3d0c5f0e63bda236.html">procedures</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="files" name="files"></a>
+Files</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="trigger__abstract_8h.html">trigger_abstract.h</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="trigger__logical_8h.html">trigger_logical.h</a></td></tr>
+<tr class="memdesc:trigger__logical_8h"><td class="mdescLeft">&#160;</td><td class="mdescRight">Combinators for composing triggers with boolean logic (AND/OR/NOT/EveryNth). <br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="trigger__result_8h.html">trigger_result.h</a></td></tr>
+<tr class="memdesc:trigger__result_8h"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structured explanation node for trigger evaluations. <br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_6ccae78e9032a1b4db4873aea5f3b43d.html">trigger</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/dir_6ccae78e9032a1b4db4873aea5f3b43d.js b/docs/html/dir_6ccae78e9032a1b4db4873aea5f3b43d.js
new file mode 100644
index 00000000..63a2ea00
--- /dev/null
+++ b/docs/html/dir_6ccae78e9032a1b4db4873aea5f3b43d.js
@@ -0,0 +1,7 @@
+var dir_6ccae78e9032a1b4db4873aea5f3b43d =
+[
+    [ "procedures", "dir_d2ba15782ddae84c3d0c5f0e63bda236.html", "dir_d2ba15782ddae84c3d0c5f0e63bda236" ],
+    [ "trigger_abstract.h", "trigger__abstract_8h.html", "trigger__abstract_8h" ],
+    [ "trigger_logical.h", "trigger__logical_8h.html", "trigger__logical_8h" ],
+    [ "trigger_result.h", "trigger__result_8h.html", "trigger__result_8h" ]
+];
\ No newline at end of file
diff --git a/docs/html/dir_897cfbcdbf2b76d535de4ec754728fa0.html b/docs/html/dir_897cfbcdbf2b76d535de4ec754728fa0.html
new file mode 100644
index 00000000..6e36d4ef
--- /dev/null
+++ b/docs/html/dir_897cfbcdbf2b76d535de4ec754728fa0.html
@@ -0,0 +1,121 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/lib/solver/strategies/triggers Directory Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('dir_897cfbcdbf2b76d535de4ec754728fa0.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">triggers Directory Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="files" name="files"></a>
+Files</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="engine__partitioning__trigger_8cpp.html">engine_partitioning_trigger.cpp</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_c85d3e3c5052e9ad9ce18c6863244a25.html">lib</a></li><li class="navelem"><a class="el" href="dir_4fd0dc9a50f7a53e22cb356c650f915e.html">solver</a></li><li class="navelem"><a class="el" href="dir_b0553efdd4ad7f265c0580564941af0c.html">strategies</a></li><li class="navelem"><a class="el" href="dir_897cfbcdbf2b76d535de4ec754728fa0.html">triggers</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/dir_897cfbcdbf2b76d535de4ec754728fa0.js b/docs/html/dir_897cfbcdbf2b76d535de4ec754728fa0.js
new file mode 100644
index 00000000..be87af8f
--- /dev/null
+++ b/docs/html/dir_897cfbcdbf2b76d535de4ec754728fa0.js
@@ -0,0 +1,4 @@
+var dir_897cfbcdbf2b76d535de4ec754728fa0 =
+[
+    [ "engine_partitioning_trigger.cpp", "engine__partitioning__trigger_8cpp.html", "engine__partitioning__trigger_8cpp" ]
+];
\ No newline at end of file
diff --git a/docs/html/dir_8e34b6fea5a3d13256b367f27bc2135d.html b/docs/html/dir_8e34b6fea5a3d13256b367f27bc2135d.html
index 4d5e7189..dcd98783 100644
--- a/docs/html/dir_8e34b6fea5a3d13256b367f27bc2135d.html
+++ b/docs/html/dir_8e34b6fea5a3d13256b367f27bc2135d.html
@@ -107,6 +107,8 @@ $(function(){initNavTree('dir_8e34b6fea5a3d13256b367f27bc2135d.html',''); initRe
 Files</h2></td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="logging_8h.html">logging.h</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="table__format_8h.html">table_format.h</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/dir_8e34b6fea5a3d13256b367f27bc2135d.js b/docs/html/dir_8e34b6fea5a3d13256b367f27bc2135d.js
index 7ea82d52..6c36881c 100644
--- a/docs/html/dir_8e34b6fea5a3d13256b367f27bc2135d.js
+++ b/docs/html/dir_8e34b6fea5a3d13256b367f27bc2135d.js
@@ -1,4 +1,5 @@
 var dir_8e34b6fea5a3d13256b367f27bc2135d =
 [
-    [ "logging.h", "logging_8h.html", "logging_8h" ]
+    [ "logging.h", "logging_8h.html", "logging_8h" ],
+    [ "table_format.h", "table__format_8h.html", "table__format_8h" ]
 ];
\ No newline at end of file
diff --git a/docs/html/dir_902e06e9d82d80b06df7be6e417fa9ee.html b/docs/html/dir_902e06e9d82d80b06df7be6e417fa9ee.html
index 0b67c4d0..d397cf16 100644
--- a/docs/html/dir_902e06e9d82d80b06df7be6e417fa9ee.html
+++ b/docs/html/dir_902e06e9d82d80b06df7be6e417fa9ee.html
@@ -103,6 +103,11 @@ $(function(){initNavTree('dir_902e06e9d82d80b06df7be6e417fa9ee.html',''); initRe
 </div><!--header-->
 <div class="contents">
 <table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="subdirs" name="subdirs"></a>
+Directories</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_da65b9a371696ae0281f77edf1c03876.html">weak</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="files" name="files"></a>
 Files</h2></td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="reaclib_8cpp.html">reaclib.cpp</a></td></tr>
diff --git a/docs/html/dir_902e06e9d82d80b06df7be6e417fa9ee.js b/docs/html/dir_902e06e9d82d80b06df7be6e417fa9ee.js
index 65379800..c6a17c72 100644
--- a/docs/html/dir_902e06e9d82d80b06df7be6e417fa9ee.js
+++ b/docs/html/dir_902e06e9d82d80b06df7be6e417fa9ee.js
@@ -1,5 +1,6 @@
 var dir_902e06e9d82d80b06df7be6e417fa9ee =
 [
+    [ "weak", "dir_da65b9a371696ae0281f77edf1c03876.html", "dir_da65b9a371696ae0281f77edf1c03876" ],
     [ "reaclib.cpp", "reaclib_8cpp.html", "reaclib_8cpp" ],
     [ "reaction.cpp", "reaction_8cpp.html", "reaction_8cpp" ]
 ];
\ No newline at end of file
diff --git a/docs/html/dir_ab918a70d5de27403bd1202d71acc71b.html b/docs/html/dir_ab918a70d5de27403bd1202d71acc71b.html
new file mode 100644
index 00000000..5b3a2719
--- /dev/null
+++ b/docs/html/dir_ab918a70d5de27403bd1202d71acc71b.html
@@ -0,0 +1,121 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/interfaces/solver Directory Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('dir_ab918a70d5de27403bd1202d71acc71b.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">solver Directory Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="files" name="files"></a>
+Files</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="solver__interfaces_8h.html">solver_interfaces.h</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_f4383b1846ef599868e873d917f1344c.html">interfaces</a></li><li class="navelem"><a class="el" href="dir_ab918a70d5de27403bd1202d71acc71b.html">solver</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/dir_ab918a70d5de27403bd1202d71acc71b.js b/docs/html/dir_ab918a70d5de27403bd1202d71acc71b.js
new file mode 100644
index 00000000..9d94a83e
--- /dev/null
+++ b/docs/html/dir_ab918a70d5de27403bd1202d71acc71b.js
@@ -0,0 +1,4 @@
+var dir_ab918a70d5de27403bd1202d71acc71b =
+[
+    [ "solver_interfaces.h", "solver__interfaces_8h.html", "solver__interfaces_8h" ]
+];
\ No newline at end of file
diff --git a/docs/html/dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html b/docs/html/dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html
index b8a0b7e2..88968b4d 100644
--- a/docs/html/dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html
+++ b/docs/html/dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html
@@ -111,6 +111,8 @@ Files</h2></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="screening__bare_8h.html">screening_bare.h</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="screening__intermediate_8h.html">screening_intermediate.h</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="screening__types_8h.html">screening_types.h</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="screening__weak_8h.html">screening_weak.h</a></td></tr>
diff --git a/docs/html/dir_ad59de2d6f32552fa0ecb4acca2fbb0b.js b/docs/html/dir_ad59de2d6f32552fa0ecb4acca2fbb0b.js
index a1971fe5..8e9c52e9 100644
--- a/docs/html/dir_ad59de2d6f32552fa0ecb4acca2fbb0b.js
+++ b/docs/html/dir_ad59de2d6f32552fa0ecb4acca2fbb0b.js
@@ -3,6 +3,7 @@ var dir_ad59de2d6f32552fa0ecb4acca2fbb0b =
     [ "screening.h", "screening_8h.html", null ],
     [ "screening_abstract.h", "screening__abstract_8h.html", "screening__abstract_8h" ],
     [ "screening_bare.h", "screening__bare_8h.html", "screening__bare_8h" ],
+    [ "screening_intermediate.h", "screening__intermediate_8h.html", "screening__intermediate_8h" ],
     [ "screening_types.h", "screening__types_8h.html", "screening__types_8h" ],
     [ "screening_weak.h", "screening__weak_8h.html", "screening__weak_8h" ]
 ];
\ No newline at end of file
diff --git a/docs/html/dir_aff155d61c3b73b9ab7dcdc908c4d49e.html b/docs/html/dir_aff155d61c3b73b9ab7dcdc908c4d49e.html
index 1adf3d80..15c42888 100644
--- a/docs/html/dir_aff155d61c3b73b9ab7dcdc908c4d49e.html
+++ b/docs/html/dir_aff155d61c3b73b9ab7dcdc908c4d49e.html
@@ -105,6 +105,8 @@ $(function(){initNavTree('dir_aff155d61c3b73b9ab7dcdc908c4d49e.html',''); initRe
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="subdirs" name="subdirs"></a>
 Directories</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_b893969db6254951682857c720518fa8.html">diagnostics</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_fedd162cb41c94f7e299c266e75251fd.html">procedures</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_80d0745b866022f2047f807b3376dff7.html">types</a></td></tr>
diff --git a/docs/html/dir_aff155d61c3b73b9ab7dcdc908c4d49e.js b/docs/html/dir_aff155d61c3b73b9ab7dcdc908c4d49e.js
index dc6a6eb3..693b1d03 100644
--- a/docs/html/dir_aff155d61c3b73b9ab7dcdc908c4d49e.js
+++ b/docs/html/dir_aff155d61c3b73b9ab7dcdc908c4d49e.js
@@ -1,5 +1,6 @@
 var dir_aff155d61c3b73b9ab7dcdc908c4d49e =
 [
+    [ "diagnostics", "dir_b893969db6254951682857c720518fa8.html", "dir_b893969db6254951682857c720518fa8" ],
     [ "procedures", "dir_fedd162cb41c94f7e299c266e75251fd.html", "dir_fedd162cb41c94f7e299c266e75251fd" ],
     [ "types", "dir_80d0745b866022f2047f807b3376dff7.html", "dir_80d0745b866022f2047f807b3376dff7" ],
     [ "views", "dir_d5492b42d970deba31f48df1b35a6c47.html", "dir_d5492b42d970deba31f48df1b35a6c47" ],
diff --git a/docs/html/dir_b0553efdd4ad7f265c0580564941af0c.html b/docs/html/dir_b0553efdd4ad7f265c0580564941af0c.html
new file mode 100644
index 00000000..e5f4a222
--- /dev/null
+++ b/docs/html/dir_b0553efdd4ad7f265c0580564941af0c.html
@@ -0,0 +1,126 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/lib/solver/strategies Directory Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('dir_b0553efdd4ad7f265c0580564941af0c.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">strategies Directory Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="subdirs" name="subdirs"></a>
+Directories</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_897cfbcdbf2b76d535de4ec754728fa0.html">triggers</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="files" name="files"></a>
+Files</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="_c_v_o_d_e__solver__strategy_8cpp.html">CVODE_solver_strategy.cpp</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_c85d3e3c5052e9ad9ce18c6863244a25.html">lib</a></li><li class="navelem"><a class="el" href="dir_4fd0dc9a50f7a53e22cb356c650f915e.html">solver</a></li><li class="navelem"><a class="el" href="dir_b0553efdd4ad7f265c0580564941af0c.html">strategies</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/dir_b0553efdd4ad7f265c0580564941af0c.js b/docs/html/dir_b0553efdd4ad7f265c0580564941af0c.js
new file mode 100644
index 00000000..980185b9
--- /dev/null
+++ b/docs/html/dir_b0553efdd4ad7f265c0580564941af0c.js
@@ -0,0 +1,5 @@
+var dir_b0553efdd4ad7f265c0580564941af0c =
+[
+    [ "triggers", "dir_897cfbcdbf2b76d535de4ec754728fa0.html", "dir_897cfbcdbf2b76d535de4ec754728fa0" ],
+    [ "CVODE_solver_strategy.cpp", "_c_v_o_d_e__solver__strategy_8cpp.html", null ]
+];
\ No newline at end of file
diff --git a/docs/html/dir_b893969db6254951682857c720518fa8.html b/docs/html/dir_b893969db6254951682857c720518fa8.html
new file mode 100644
index 00000000..7c6a2fed
--- /dev/null
+++ b/docs/html/dir_b893969db6254951682857c720518fa8.html
@@ -0,0 +1,121 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/engine/diagnostics Directory Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('dir_b893969db6254951682857c720518fa8.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">diagnostics Directory Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="files" name="files"></a>
+Files</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dynamic__engine__diagnostics_8h.html">dynamic_engine_diagnostics.h</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_aff155d61c3b73b9ab7dcdc908c4d49e.html">engine</a></li><li class="navelem"><a class="el" href="dir_b893969db6254951682857c720518fa8.html">diagnostics</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/dir_b893969db6254951682857c720518fa8.js b/docs/html/dir_b893969db6254951682857c720518fa8.js
new file mode 100644
index 00000000..e3f54800
--- /dev/null
+++ b/docs/html/dir_b893969db6254951682857c720518fa8.js
@@ -0,0 +1,4 @@
+var dir_b893969db6254951682857c720518fa8 =
+[
+    [ "dynamic_engine_diagnostics.h", "dynamic__engine__diagnostics_8h.html", "dynamic__engine__diagnostics_8h" ]
+];
\ No newline at end of file
diff --git a/docs/html/dir_c99e86cd0291aa23d2204e664fe571c1.html b/docs/html/dir_c99e86cd0291aa23d2204e664fe571c1.html
new file mode 100644
index 00000000..09016e2d
--- /dev/null
+++ b/docs/html/dir_c99e86cd0291aa23d2204e664fe571c1.html
@@ -0,0 +1,121 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/lib/engine/diagnostics Directory Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('dir_c99e86cd0291aa23d2204e664fe571c1.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">diagnostics Directory Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="files" name="files"></a>
+Files</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dynamic__engine__diagnostics_8cpp.html">dynamic_engine_diagnostics.cpp</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_c85d3e3c5052e9ad9ce18c6863244a25.html">lib</a></li><li class="navelem"><a class="el" href="dir_3cc0b3e3c66436f74054a789a4a47fbc.html">engine</a></li><li class="navelem"><a class="el" href="dir_c99e86cd0291aa23d2204e664fe571c1.html">diagnostics</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/dir_c99e86cd0291aa23d2204e664fe571c1.js b/docs/html/dir_c99e86cd0291aa23d2204e664fe571c1.js
new file mode 100644
index 00000000..97586ce9
--- /dev/null
+++ b/docs/html/dir_c99e86cd0291aa23d2204e664fe571c1.js
@@ -0,0 +1,4 @@
+var dir_c99e86cd0291aa23d2204e664fe571c1 =
+[
+    [ "dynamic_engine_diagnostics.cpp", "dynamic__engine__diagnostics_8cpp.html", "dynamic__engine__diagnostics_8cpp" ]
+];
\ No newline at end of file
diff --git a/docs/html/dir_d2ba15782ddae84c3d0c5f0e63bda236.html b/docs/html/dir_d2ba15782ddae84c3d0c5f0e63bda236.html
new file mode 100644
index 00000000..06676fcb
--- /dev/null
+++ b/docs/html/dir_d2ba15782ddae84c3d0c5f0e63bda236.html
@@ -0,0 +1,121 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/trigger/procedures Directory Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('dir_d2ba15782ddae84c3d0c5f0e63bda236.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">procedures Directory Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="files" name="files"></a>
+Files</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="trigger__pprint_8h.html">trigger_pprint.h</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_6ccae78e9032a1b4db4873aea5f3b43d.html">trigger</a></li><li class="navelem"><a class="el" href="dir_d2ba15782ddae84c3d0c5f0e63bda236.html">procedures</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/dir_d2ba15782ddae84c3d0c5f0e63bda236.js b/docs/html/dir_d2ba15782ddae84c3d0c5f0e63bda236.js
new file mode 100644
index 00000000..daaa50d0
--- /dev/null
+++ b/docs/html/dir_d2ba15782ddae84c3d0c5f0e63bda236.js
@@ -0,0 +1,4 @@
+var dir_d2ba15782ddae84c3d0c5f0e63bda236 =
+[
+    [ "trigger_pprint.h", "trigger__pprint_8h.html", "trigger__pprint_8h" ]
+];
\ No newline at end of file
diff --git a/docs/html/dir_da65b9a371696ae0281f77edf1c03876.html b/docs/html/dir_da65b9a371696ae0281f77edf1c03876.html
new file mode 100644
index 00000000..ef002016
--- /dev/null
+++ b/docs/html/dir_da65b9a371696ae0281f77edf1c03876.html
@@ -0,0 +1,123 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/lib/reaction/weak Directory Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('dir_da65b9a371696ae0281f77edf1c03876.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">weak Directory Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="files" name="files"></a>
+Files</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="weak_8cpp.html">weak.cpp</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="weak__interpolator_8cpp.html">weak_interpolator.cpp</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_c85d3e3c5052e9ad9ce18c6863244a25.html">lib</a></li><li class="navelem"><a class="el" href="dir_902e06e9d82d80b06df7be6e417fa9ee.html">reaction</a></li><li class="navelem"><a class="el" href="dir_da65b9a371696ae0281f77edf1c03876.html">weak</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/dir_da65b9a371696ae0281f77edf1c03876.js b/docs/html/dir_da65b9a371696ae0281f77edf1c03876.js
new file mode 100644
index 00000000..5c9fc6fd
--- /dev/null
+++ b/docs/html/dir_da65b9a371696ae0281f77edf1c03876.js
@@ -0,0 +1,5 @@
+var dir_da65b9a371696ae0281f77edf1c03876 =
+[
+    [ "weak.cpp", "weak_8cpp.html", null ],
+    [ "weak_interpolator.cpp", "weak__interpolator_8cpp.html", null ]
+];
\ No newline at end of file
diff --git a/docs/html/dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html b/docs/html/dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html
index 246a0557..e888a2b0 100644
--- a/docs/html/dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html
+++ b/docs/html/dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html
@@ -103,6 +103,11 @@ $(function(){initNavTree('dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html',''); initRe
 </div><!--header-->
 <div class="contents">
 <table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="subdirs" name="subdirs"></a>
+Directories</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_230a420a279f78b45ea47b2d650bf1a7.html">strategies</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="files" name="files"></a>
 Files</h2></td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="solver_8h.html">solver.h</a></td></tr>
diff --git a/docs/html/dir_e2a8863ee8e7cd9122c04bdba1c35a3b.js b/docs/html/dir_e2a8863ee8e7cd9122c04bdba1c35a3b.js
index 93c4a905..b05fd88f 100644
--- a/docs/html/dir_e2a8863ee8e7cd9122c04bdba1c35a3b.js
+++ b/docs/html/dir_e2a8863ee8e7cd9122c04bdba1c35a3b.js
@@ -1,4 +1,5 @@
 var dir_e2a8863ee8e7cd9122c04bdba1c35a3b =
 [
+    [ "strategies", "dir_230a420a279f78b45ea47b2d650bf1a7.html", "dir_230a420a279f78b45ea47b2d650bf1a7" ],
     [ "solver.h", "solver_8h.html", "solver_8h" ]
 ];
\ No newline at end of file
diff --git a/docs/html/dir_e87948a39c0c6c3f66d9f5f967ab86bd.js b/docs/html/dir_e87948a39c0c6c3f66d9f5f967ab86bd.js
index 14cc59a4..e16d9bee 100644
--- a/docs/html/dir_e87948a39c0c6c3f66d9f5f967ab86bd.js
+++ b/docs/html/dir_e87948a39c0c6c3f66d9f5f967ab86bd.js
@@ -2,6 +2,6 @@ var dir_e87948a39c0c6c3f66d9f5f967ab86bd =
 [
     [ "engine_adaptive.cpp", "engine__adaptive_8cpp.html", null ],
     [ "engine_defined.cpp", "engine__defined_8cpp.html", null ],
-    [ "engine_multiscale.cpp", "engine__multiscale_8cpp.html", "engine__multiscale_8cpp" ],
+    [ "engine_multiscale.cpp", "engine__multiscale_8cpp.html", null ],
     [ "engine_priming.cpp", "engine__priming_8cpp.html", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/dir_f2d7b0c77cb2532170ac94ead6e4ba70.html b/docs/html/dir_f2d7b0c77cb2532170ac94ead6e4ba70.html
index 03725aac..61ca5e28 100644
--- a/docs/html/dir_f2d7b0c77cb2532170ac94ead6e4ba70.html
+++ b/docs/html/dir_f2d7b0c77cb2532170ac94ead6e4ba70.html
@@ -103,6 +103,11 @@ $(function(){initNavTree('dir_f2d7b0c77cb2532170ac94ead6e4ba70.html',''); initRe
 </div><!--header-->
 <div class="contents">
 <table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="subdirs" name="subdirs"></a>
+Directories</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_67aa14af464fbd247881f6980be7deb5.html">weak</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="files" name="files"></a>
 Files</h2></td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="icondoc"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="reaclib_8h.html">reaclib.h</a></td></tr>
diff --git a/docs/html/dir_f2d7b0c77cb2532170ac94ead6e4ba70.js b/docs/html/dir_f2d7b0c77cb2532170ac94ead6e4ba70.js
index a64050ac..04a5cd13 100644
--- a/docs/html/dir_f2d7b0c77cb2532170ac94ead6e4ba70.js
+++ b/docs/html/dir_f2d7b0c77cb2532170ac94ead6e4ba70.js
@@ -1,5 +1,6 @@
 var dir_f2d7b0c77cb2532170ac94ead6e4ba70 =
 [
+    [ "weak", "dir_67aa14af464fbd247881f6980be7deb5.html", "dir_67aa14af464fbd247881f6980be7deb5" ],
     [ "reaclib.h", "reaclib_8h.html", "reaclib_8h" ],
     [ "reaction.h", "reaction_8h.html", "reaction_8h" ],
     [ "reactions_data.h", "reactions__data_8h.html", "reactions__data_8h" ]
diff --git a/docs/html/dir_f4383b1846ef599868e873d917f1344c.html b/docs/html/dir_f4383b1846ef599868e873d917f1344c.html
new file mode 100644
index 00000000..ae42d4dd
--- /dev/null
+++ b/docs/html/dir_f4383b1846ef599868e873d917f1344c.html
@@ -0,0 +1,121 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/interfaces Directory Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('dir_f4383b1846ef599868e873d917f1344c.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">interfaces Directory Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="subdirs" name="subdirs"></a>
+Directories</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top"><span class="iconfclosed"></span>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="dir_ab918a70d5de27403bd1202d71acc71b.html">solver</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_f4383b1846ef599868e873d917f1344c.html">interfaces</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/dir_f4383b1846ef599868e873d917f1344c.js b/docs/html/dir_f4383b1846ef599868e873d917f1344c.js
new file mode 100644
index 00000000..a2f70c17
--- /dev/null
+++ b/docs/html/dir_f4383b1846ef599868e873d917f1344c.js
@@ -0,0 +1,4 @@
+var dir_f4383b1846ef599868e873d917f1344c =
+[
+    [ "solver", "dir_ab918a70d5de27403bd1202d71acc71b.html", "dir_ab918a70d5de27403bd1202d71acc71b" ]
+];
\ No newline at end of file
diff --git a/docs/html/doxygen_crawl.html b/docs/html/doxygen_crawl.html
index a63fc04e..262a0799 100644
--- a/docs/html/doxygen_crawl.html
+++ b/docs/html/doxygen_crawl.html
@@ -9,6 +9,8 @@
 </head>
 <body>
 <a href="_2_users_2tboudreaux_2_programming_24_d_s_t_a_r_2_grid_fire_2src_2include_2gridfire_2engine_2engine_approx8_8h-example.html"/>
+<a href="_c_v_o_d_e__solver__strategy_8cpp.html"/>
+<a href="_c_v_o_d_e__solver__strategy_8h.html"/>
 <a href="annotated.html"/>
 <a href="bindings_8cpp.html"/>
 <a href="bindings_8cpp.html#aa8955e3a8d1ea2d94e8a2c941a12c03f"/>
@@ -18,25 +20,25 @@
 <a href="class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3"/>
 <a href="class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22"/>
 <a href="class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159"/>
+<a href="class_py_dynamic_engine.html#a1d5143640666631501cf229bc491516e"/>
 <a href="class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9"/>
 <a href="class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03"/>
-<a href="class_py_dynamic_engine.html#a2ee1d745c1c21b9fcb652c96c42f1091"/>
 <a href="class_py_dynamic_engine.html#a3d30a9116825ab2c5c209bc2712126bc"/>
 <a href="class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14"/>
-<a href="class_py_dynamic_engine.html#a5988cfba247631ba6c00795cafda9a38"/>
 <a href="class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a"/>
 <a href="class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d"/>
 <a href="class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac"/>
 <a href="class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a"/>
+<a href="class_py_dynamic_engine.html#a95d10a7b240d543a1bc6c67ddf2dc8e0"/>
 <a href="class_py_dynamic_engine.html#aa0f1fd3f0c0185395193d1b6897d64c5"/>
 <a href="class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83"/>
 <a href="class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5"/>
 <a href="class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878"/>
 <a href="class_py_dynamic_engine.html#adba68716d832b6100e08d32fbc36f13c"/>
+<a href="class_py_dynamic_engine.html#af469cba3be850d53f659ec173f0eb4e4"/>
 <a href="class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8"/>
 <a href="class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac"/>
 <a href="class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d"/>
-<a href="class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6"/>
 <a href="class_py_dynamic_engine_view-members.html"/>
 <a href="class_py_dynamic_engine_view.html"/>
 <a href="class_py_dynamic_engine_view.html#a51680b135cfc3eea40daf9ef5aa903e0"/>
@@ -66,117 +68,124 @@
 <a href="class_py_partition_function.html#af918b357e38fb82499ad53584557c43d"/>
 <a href="class_py_screening-members.html"/>
 <a href="class_py_screening.html"/>
-<a href="class_py_screening.html#a2b8756c197eb89e77cb6dd231c979315"/>
-<a href="class_py_screening.html#a5539d59311c778cf7f0006acc8f84ade"/>
+<a href="class_py_screening.html#a68a126de903e1a87a1d7d1cfec8add0f"/>
+<a href="class_py_screening.html#aa67b5f0528006d9c742033b8c5ab3a05"/>
+<a href="class_solver_plugin_interface-members.html"/>
+<a href="class_solver_plugin_interface.html"/>
+<a href="class_solver_plugin_interface.html#a493a30c0ae4b2e1a89b7d03c02c0041c"/>
+<a href="class_solver_plugin_interface.html#a5611d046cd2fd4d4200785725854e39b"/>
 <a href="classes.html"/>
 <a href="classgridfire_1_1_adaptive_engine_view-members.html"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html"/>
-<a href="classgridfire_1_1_adaptive_engine_view.html#a03fc187d3d306b9058103b9522cbbaeb"/>
-<a href="classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31"/>
+<a href="classgridfire_1_1_adaptive_engine_view.html#a0439f464865b4c01bad0f6be6055c3fc"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b"/>
-<a href="classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30"/>
-<a href="classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd"/>
+<a href="classgridfire_1_1_adaptive_engine_view.html#a3247c1e6a76de5622223ee7b5ca3452a"/>
+<a href="classgridfire_1_1_adaptive_engine_view.html#a3c1e27b45051c4ba481a2b87513982ed"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44"/>
-<a href="classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08"/>
-<a href="classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8"/>
-<a href="classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9"/>
-<a href="classgridfire_1_1_adaptive_engine_view.html#a4ff60b5214ec0bdaf683feb6615573a5"/>
-<a href="classgridfire_1_1_adaptive_engine_view.html#a522e78bce9ff062939572248d57f8cea"/>
+<a href="classgridfire_1_1_adaptive_engine_view.html#a57a218c5a145f589531777c8615b7408"/>
+<a href="classgridfire_1_1_adaptive_engine_view.html#a5d1b50afd2fba6af75e976a4f9c9dcbc"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e"/>
-<a href="classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3"/>
-<a href="classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672"/>
+<a href="classgridfire_1_1_adaptive_engine_view.html#a7b8b3a786b973e4383e721358e61b7ed"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019"/>
-<a href="classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d"/>
-<a href="classgridfire_1_1_adaptive_engine_view.html#a9055feb245524a5a9549ace935f059ff"/>
+<a href="classgridfire_1_1_adaptive_engine_view.html#a8da7664cf483cba7f979f855a74c3559"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101"/>
-<a href="classgridfire_1_1_adaptive_engine_view.html#aa79fb382c98461b02a2c30668491e6c5"/>
+<a href="classgridfire_1_1_adaptive_engine_view.html#a95fbfb7f2bdbf80195f1ea0aff8d62fb"/>
+<a href="classgridfire_1_1_adaptive_engine_view.html#aa861db5f6fc4e85fb51f524e4e1367c6"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b"/>
-<a href="classgridfire_1_1_adaptive_engine_view.html#abdbaf4b87629efe43ac1255dad424c0c"/>
+<a href="classgridfire_1_1_adaptive_engine_view.html#ab5397d217039f096acededd4d2779780"/>
+<a href="classgridfire_1_1_adaptive_engine_view.html#ab5ab06941bf6d97007d0a76658bf2aa6"/>
+<a href="classgridfire_1_1_adaptive_engine_view.html#abb811382522c31f6456787edd4f59ace"/>
+<a href="classgridfire_1_1_adaptive_engine_view.html#abe2ca6426e10cc6a10090eecf7098dbe"/>
+<a href="classgridfire_1_1_adaptive_engine_view.html#ac5545d546166de94514871d7ad7b8669"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193"/>
+<a href="classgridfire_1_1_adaptive_engine_view.html#ac674338ddcbae4c33dd84b0441631806"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455"/>
+<a href="classgridfire_1_1_adaptive_engine_view.html#adedc8547568d643473bdfcc86040b488"/>
+<a href="classgridfire_1_1_adaptive_engine_view.html#adf3b8a5734983509ca02b7a1a480119f"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940"/>
-<a href="classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5"/>
 <a href="classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3"/>
 <a href="classgridfire_1_1_defined_engine_view-members.html"/>
 <a href="classgridfire_1_1_defined_engine_view.html"/>
+<a href="classgridfire_1_1_defined_engine_view.html#a06aca977aafb4784fd167acb8c02dda2"/>
 <a href="classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460"/>
-<a href="classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032"/>
+<a href="classgridfire_1_1_defined_engine_view.html#a18f46d92ea7e04068ad9e7af4ed605a8"/>
 <a href="classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211"/>
 <a href="classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382"/>
-<a href="classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b"/>
 <a href="classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873"/>
-<a href="classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965"/>
 <a href="classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c"/>
-<a href="classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491"/>
-<a href="classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d"/>
 <a href="classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3"/>
 <a href="classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0"/>
+<a href="classgridfire_1_1_defined_engine_view.html#a5f9db5a9287aa03b2fa4d516e9a576b6"/>
 <a href="classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843"/>
 <a href="classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae"/>
+<a href="classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9"/>
 <a href="classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484"/>
 <a href="classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195"/>
 <a href="classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2"/>
+<a href="classgridfire_1_1_defined_engine_view.html#a74298377d0432ae3d577be0e9e6052b3"/>
+<a href="classgridfire_1_1_defined_engine_view.html#a7bcf169ba1e12e3356d4bcc27c3fc554"/>
 <a href="classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87"/>
-<a href="classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d"/>
+<a href="classgridfire_1_1_defined_engine_view.html#a824fe65ae22fa856051f2652764a0bb6"/>
 <a href="classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92"/>
 <a href="classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985"/>
+<a href="classgridfire_1_1_defined_engine_view.html#aa49532266ff959ac66f501336f102ce8"/>
 <a href="classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1"/>
 <a href="classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68"/>
+<a href="classgridfire_1_1_defined_engine_view.html#ab80eadd713a40e9263e5231737e956d0"/>
 <a href="classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258"/>
-<a href="classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3"/>
-<a href="classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72"/>
 <a href="classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e"/>
 <a href="classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6"/>
-<a href="classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae"/>
 <a href="classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e"/>
-<a href="classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d"/>
 <a href="classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae"/>
+<a href="classgridfire_1_1_defined_engine_view.html#af1843cfd2a95bfa46ab40d4c4de11ef9"/>
+<a href="classgridfire_1_1_defined_engine_view.html#af273b29d7700cdc34da6e2712fffc5c2"/>
+<a href="classgridfire_1_1_defined_engine_view.html#af3b355ffcda6a8f2841184cc56e3761a"/>
 <a href="classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a"/>
-<a href="classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2"/>
 <a href="classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd"/>
 <a href="classgridfire_1_1_dynamic_engine-members.html"/>
 <a href="classgridfire_1_1_dynamic_engine.html"/>
 <a href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9"/>
-<a href="classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07"/>
+<a href="classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd"/>
 <a href="classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e"/>
-<a href="classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d"/>
+<a href="classgridfire_1_1_dynamic_engine.html#a21d15531309456ee83f7675251e7a1bf"/>
+<a href="classgridfire_1_1_dynamic_engine.html#a25c040d3078f6ff2ef38f733eb68f1fa"/>
+<a href="classgridfire_1_1_dynamic_engine.html#a264bd5a8891c8c5f0dff32867effe547"/>
+<a href="classgridfire_1_1_dynamic_engine.html#a39cf5b738eea0a275bf8c0eb5789fab3"/>
 <a href="classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd"/>
+<a href="classgridfire_1_1_dynamic_engine.html#a49025489901e22a20cdf99b455ff2ff0"/>
 <a href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf"/>
 <a href="classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a"/>
-<a href="classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785"/>
-<a href="classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813"/>
-<a href="classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6"/>
 <a href="classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0"/>
-<a href="classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7"/>
+<a href="classgridfire_1_1_dynamic_engine.html#a88dbf350dc0ea3e2b64d825f489e0d60"/>
+<a href="classgridfire_1_1_dynamic_engine.html#a8f66fb76c9f983ee93bf8b95cdc85596"/>
 <a href="classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398"/>
 <a href="classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a"/>
-<a href="classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037"/>
-<a href="classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9"/>
+<a href="classgridfire_1_1_dynamic_engine.html#ad19c8451b6f624e2938f771cc067d5c1"/>
+<a href="classgridfire_1_1_dynamic_engine.html#ae7114f5ebc6667b5e5971c0450ed03d9"/>
 <a href="classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f"/>
-<a href="classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f"/>
-<a href="classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f"/>
+<a href="classgridfire_1_1_dynamic_engine.html#af496e04f7be9a0a51ac65dc95f901ffe"/>
 <a href="classgridfire_1_1_engine-members.html"/>
 <a href="classgridfire_1_1_engine.html"/>
 <a href="classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3"/>
 <a href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037"/>
-<a href="classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb"/>
+<a href="classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740"/>
 <a href="classgridfire_1_1_engine_view-members.html"/>
 <a href="classgridfire_1_1_engine_view.html"/>
 <a href="classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74"/>
@@ -196,76 +205,79 @@
 <a href="classgridfire_1_1_graph_engine.html"/>
 <a href="classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f"/>
 <a href="classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755"/>
-<a href="classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28"/>
 <a href="classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767"/>
 <a href="classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e"/>
 <a href="classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4"/>
-<a href="classgridfire_1_1_graph_engine.html#a17774cd9ffcf1ba94019df766a0984a0"/>
+<a href="classgridfire_1_1_graph_engine.html#a1675859971f0bd2db0650f8da54ed7eb"/>
+<a href="classgridfire_1_1_graph_engine.html#a16b8cd1b0e19b4d4519596a4e22eaf5c"/>
 <a href="classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de"/>
 <a href="classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06"/>
-<a href="classgridfire_1_1_graph_engine.html#a1e7e851dfa21d41c2dc533ba56fc4c7b"/>
+<a href="classgridfire_1_1_graph_engine.html#a1d5f6a3f217af7f4d0f95bdf7916b774"/>
 <a href="classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891"/>
 <a href="classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567"/>
 <a href="classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f"/>
 <a href="classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746"/>
+<a href="classgridfire_1_1_graph_engine.html#a2bea809d2efb3a5e7cc065ec80baebce"/>
 <a href="classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876"/>
 <a href="classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910"/>
-<a href="classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c"/>
 <a href="classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827"/>
 <a href="classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc"/>
 <a href="classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e"/>
-<a href="classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0"/>
-<a href="classgridfire_1_1_graph_engine.html#a39d9838ed40bea71ee6c552bb5969026"/>
+<a href="classgridfire_1_1_graph_engine.html#a38aaafb1d9a6548bc8e8cb672417bbbe"/>
+<a href="classgridfire_1_1_graph_engine.html#a3a03fbd767f495ca667f23789b07c293"/>
 <a href="classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18"/>
+<a href="classgridfire_1_1_graph_engine.html#a3b7f3ba85821165f58f168bc68f86b2d"/>
 <a href="classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197"/>
 <a href="classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391"/>
+<a href="classgridfire_1_1_graph_engine.html#a47df5a9c448dd1ce8654df819a6cc8ff"/>
 <a href="classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53"/>
+<a href="classgridfire_1_1_graph_engine.html#a4e0bbc6448999e2ef06879270b7d3dec"/>
+<a href="classgridfire_1_1_graph_engine.html#a514cc6b5482d6a27902975da17b5e39e"/>
+<a href="classgridfire_1_1_graph_engine.html#a52288e2629609c8438a3c9bc3f910016"/>
 <a href="classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80"/>
 <a href="classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6"/>
 <a href="classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3"/>
 <a href="classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3"/>
-<a href="classgridfire_1_1_graph_engine.html#a5e96b5a0b34c8932f0e14eabda57f1a4"/>
-<a href="classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581"/>
 <a href="classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a"/>
-<a href="classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152"/>
 <a href="classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1"/>
-<a href="classgridfire_1_1_graph_engine.html#a71a3d1181b90c3becdc5d9a3da05b9c9"/>
+<a href="classgridfire_1_1_graph_engine.html#a7acc98647427981a9602d251c9288012"/>
+<a href="classgridfire_1_1_graph_engine.html#a7dde968244f3c4934c7738445c709232"/>
 <a href="classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01"/>
 <a href="classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6"/>
 <a href="classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95"/>
+<a href="classgridfire_1_1_graph_engine.html#a8873331f5ae40a3f640dedbbed685ed9"/>
+<a href="classgridfire_1_1_graph_engine.html#a8ab5308629b8707922e5954776254aa6"/>
 <a href="classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9"/>
 <a href="classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5"/>
-<a href="classgridfire_1_1_graph_engine.html#a914f6abc61805cddaebcb8f3cf470dda"/>
-<a href="classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f"/>
+<a href="classgridfire_1_1_graph_engine.html#a8ff064c9996772281984f88ee492d04a"/>
 <a href="classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd"/>
 <a href="classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc"/>
-<a href="classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889"/>
-<a href="classgridfire_1_1_graph_engine.html#a9687eef88c97eeb7f8680acb230f8ac1"/>
-<a href="classgridfire_1_1_graph_engine.html#a97f98706b51fbe0d167ed81ffe58c438"/>
+<a href="classgridfire_1_1_graph_engine.html#a9340db538a507b96e186b60ba0450205"/>
+<a href="classgridfire_1_1_graph_engine.html#a972d0705351167dc889a2f6c442e7a93"/>
+<a href="classgridfire_1_1_graph_engine.html#a9ac5893030802b0b846552949e866340"/>
 <a href="classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c"/>
+<a href="classgridfire_1_1_graph_engine.html#a9e426e6c178dd80bd58090489d3b2be9"/>
 <a href="classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b"/>
-<a href="classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081"/>
-<a href="classgridfire_1_1_graph_engine.html#aaf4d54e4b774ab8ec8eabec006579d31"/>
-<a href="classgridfire_1_1_graph_engine.html#acb7c4f5108b0efeae48ad15598e808c3"/>
+<a href="classgridfire_1_1_graph_engine.html#ab29ef3225c8fcda012b10765df064b63"/>
+<a href="classgridfire_1_1_graph_engine.html#accf01734524a706ad03c9b9898af54b3"/>
 <a href="classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f"/>
 <a href="classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be"/>
-<a href="classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119"/>
 <a href="classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24"/>
-<a href="classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da"/>
+<a href="classgridfire_1_1_graph_engine.html#ad3b97595871d1f62ee7f4726b601ebef"/>
 <a href="classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7"/>
+<a href="classgridfire_1_1_graph_engine.html#ad90a2d770ebf098f0d6d5f5339961e95"/>
 <a href="classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490"/>
 <a href="classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929"/>
 <a href="classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44"/>
+<a href="classgridfire_1_1_graph_engine.html#ae0c9159cc3467fd85d1a5895f1786c47"/>
+<a href="classgridfire_1_1_graph_engine.html#ae11f6267077025ca342e2e263ad87e5e"/>
 <a href="classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0"/>
 <a href="classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e"/>
 <a href="classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38"/>
 <a href="classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa"/>
-<a href="classgridfire_1_1_graph_engine.html#aef8f6bde24d27345067b71084330c7da"/>
+<a href="classgridfire_1_1_graph_engine.html#aef12443d7980301d8bb89f4ba4890450"/>
 <a href="classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5"/>
 <a href="classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210"/>
-<a href="classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7"/>
-<a href="classgridfire_1_1_graph_engine.html#af41df9ce979b6410e12642cb093916c9"/>
-<a href="classgridfire_1_1_graph_engine.html#afad967546b611d9c005268760feb75d5"/>
 <a href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate-members.html"/>
 <a href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html"/>
 <a href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf"/>
@@ -279,51 +291,50 @@
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a05e45017bbb772c586f483bd527004ee"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a14b0c7ec882b2ad2370f7aa729b9f9"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a253e51d6dc7226a863a123683049af61"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a2f0c45d4e2b2f9de5d961088f3ab0a9a"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a38b4f0373c3bd81503889650c0bb69bb"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c5fcb8e3396d74359fd601554c9ffa9"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3af2b37ce21829d9554d702cad074470"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c327a40d7c667043826002975baa2b4"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a40ce2c18063cd56cffd58419b9ae96bf"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a510b920dea726aef859ac1f6d051807e"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a53862719dd73f98bc69eecde090cf655"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a54ca8004fbd8d6d3ea6f67efeb5dbc8d"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a560612347bbd5b7b380e990624d01105"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a586da5402750151fee5db2666785b6e4"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a5c1ab19bc3394a5d29241ef02073c4cb"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a5d1c11f3c0883385833462dd088f6f89"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a70f4a0c4123b7f78305f64eb11beeeeb"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7140384baaaa0bd05ca448a0d8fec471"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a91d32b7197fcb27ee697d5bfde960f3f"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a87687a960f263a4e1bc035e4d0a345db"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a8db21995e6878f4043f3a5a45bf36d5e"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aa38c367ef3c74d012ccd10521cd5a727"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aa55ed182301d216264daae3e6dfd8917"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a99f9116d5a18afcbf0e808ef111d1be8"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aaabaae8e33ca8a05a2aa1f374e792795"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aae0865e361dfeb23984d70409fdd9f39"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ab9f71bc9a1c0f98ec9cc1c7da00fd975"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ac206840057bac65b7f7738e6dfd1047a"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ac961484383e86d9712a424728e068633"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#acb5fa7f03cd89b8c1b6b9ffdf3abb12e"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#acdf5ad8765290ea2b78170235aea391d"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ad4d29ee55f89384807616d1068797067"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ad751f2c1306895ee74a61f2071ca96eb"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ae3875c61dc916c0982ed122c2e272d94"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ad94c6fa2281d9104471631c6b90f411e"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#adfa1e133c49c0ef78b374d37e90a3372"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aea2c3d2ae6ddf77bd4a9b07b86f3306b"/>
 <a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f"/>
-<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#af13e764c118a6cc51847384e9c70e05b"/>
+<a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#af99f5e4871808188d00379c1c35868fe"/>
 <a href="classgridfire_1_1_network-members.html"/>
 <a href="classgridfire_1_1_network.html"/>
 <a href="classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16"/>
@@ -348,45 +359,62 @@
 <a href="classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5"/>
 <a href="classgridfire_1_1_reaction-members.html"/>
 <a href="classgridfire_1_1_reaction.html"/>
-<a href="classgridfire_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6"/>
-<a href="classgridfire_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c"/>
-<a href="classgridfire_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2"/>
-<a href="classgridfire_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905"/>
-<a href="classgridfire_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9"/>
-<a href="classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b"/>
-<a href="classgridfire_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b"/>
-<a href="classgridfire_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97"/>
+<a href="classgridfire_1_1_reaction.html#a0c533797f18c2fe4945f1afb3fb06d5d"/>
+<a href="classgridfire_1_1_reaction.html#a11c714febaf818f1d4d6c19a064d707e"/>
+<a href="classgridfire_1_1_reaction.html#a186856dc2ce85d8cc4db43c7164b6afa"/>
 <a href="classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8"/>
-<a href="classgridfire_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51"/>
-<a href="classgridfire_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061"/>
-<a href="classgridfire_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0"/>
-<a href="classgridfire_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e"/>
-<a href="classgridfire_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b"/>
-<a href="classgridfire_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b"/>
-<a href="classgridfire_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629"/>
-<a href="classgridfire_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248"/>
-<a href="classgridfire_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af"/>
-<a href="classgridfire_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02"/>
-<a href="classgridfire_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4"/>
-<a href="classgridfire_1_1_reaction.html#a735192a42f72cd68f289493753e1a616"/>
-<a href="classgridfire_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97"/>
-<a href="classgridfire_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224"/>
-<a href="classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c"/>
-<a href="classgridfire_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923"/>
-<a href="classgridfire_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e"/>
-<a href="classgridfire_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11"/>
-<a href="classgridfire_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5"/>
-<a href="classgridfire_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72"/>
-<a href="classgridfire_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba"/>
-<a href="classgridfire_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac"/>
+<a href="classgridfire_1_1_reaction.html#a348aae35a6c82194ef5387278419e0e6"/>
+<a href="classgridfire_1_1_reaction.html#a41b1c16f499c9255251ed43725cf698c"/>
+<a href="classgridfire_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80"/>
+<a href="classgridfire_1_1_reaction.html#a4be8440aa7e79eab1d44b5d83bcdab79"/>
+<a href="classgridfire_1_1_reaction.html#a55b7f61d9bde45f2ca485c1b07a05950"/>
+<a href="classgridfire_1_1_reaction.html#a588a8c19970463d97f5aa333fcd312dc"/>
+<a href="classgridfire_1_1_reaction.html#a5a17ca61d069749960e5a83e58c0b8a1"/>
+<a href="classgridfire_1_1_reaction.html#a640b0bdbed9ed7c2a2e9880ddbcafc1d"/>
+<a href="classgridfire_1_1_reaction.html#a768329002a4f0b8604b1aa51d56b5d1b"/>
+<a href="classgridfire_1_1_reaction.html#a8cbc768819bea8497a7b9fa644b8fd65"/>
 <a href="classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a"/>
-<a href="classgridfire_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b"/>
-<a href="classgridfire_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45"/>
-<a href="classgridfire_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8"/>
-<a href="classgridfire_1_1_reaction.html#ac426457cf0a54a15b206549422083bac"/>
-<a href="classgridfire_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3"/>
-<a href="classgridfire_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec"/>
-<a href="classgridfire_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5"/>
+<a href="classgridfire_1_1_reaction.html#abb3e2b9c5404f45fc5656eeac1d06a6c"/>
+<a href="classgridfire_1_1_reaction.html#ac2306d841bad605b7c9ae104397cec0f"/>
+<a href="classgridfire_1_1_reaction.html#ac2918935929030e8d218dc8d107a78f9"/>
+<a href="classgridfire_1_1_reaction.html#ace0b2bee91702e0ab97b6fc74999d6f0"/>
+<a href="classgridfire_1_1_reaction.html#adaeb5d72faf7d55d4e26f6e1fcba21c1"/>
+<a href="classgridfire_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd"/>
+<a href="classgridfire_1_1_reaction.html#aec9859c030364e1d4a740197514731db"/>
+<a href="classgridfire_1_1_reaction.html#af0a893603aa88f7d7d205b9b969af487"/>
+<a href="classgridfire_1_1_reaction.html#afca3afba45a3db79980c8fe18c87c750"/>
+<a href="classgridfire_1_1_reaction_set-members.html"/>
+<a href="classgridfire_1_1_reaction_set.html"/>
+<a href="classgridfire_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd"/>
+<a href="classgridfire_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b"/>
+<a href="classgridfire_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613"/>
+<a href="classgridfire_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2"/>
+<a href="classgridfire_1_1_reaction_set.html#a2f6b165c86634a68f35032c2267255f8"/>
+<a href="classgridfire_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b"/>
+<a href="classgridfire_1_1_reaction_set.html#a436f9c4b8f8a4e115b19728d57d8e105"/>
+<a href="classgridfire_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e"/>
+<a href="classgridfire_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135"/>
+<a href="classgridfire_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8"/>
+<a href="classgridfire_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20"/>
+<a href="classgridfire_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a"/>
+<a href="classgridfire_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44"/>
+<a href="classgridfire_1_1_reaction_set.html#a789dee5d93810b85062e59508fe0adea"/>
+<a href="classgridfire_1_1_reaction_set.html#a896b4e492ef596d9174aeda4b59c46cd"/>
+<a href="classgridfire_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de"/>
+<a href="classgridfire_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300"/>
+<a href="classgridfire_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a"/>
+<a href="classgridfire_1_1_reaction_set.html#ab9edff40316b42ce41b2f895962c1041"/>
+<a href="classgridfire_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987"/>
+<a href="classgridfire_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe"/>
+<a href="classgridfire_1_1_reaction_set.html#acfe2341ae1f016ad82098b6f5a1efc45"/>
+<a href="classgridfire_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99"/>
+<a href="classgridfire_1_1_reaction_set.html#ad7e95562ea0860bf492b447341f41fb5"/>
+<a href="classgridfire_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1"/>
+<a href="classgridfire_1_1_reaction_set.html#adb73fe9ff0178359409e2bea46a620c2"/>
+<a href="classgridfire_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387"/>
+<a href="classgridfire_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf"/>
+<a href="classgridfire_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111"/>
+<a href="classgridfire_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb"/>
 <a href="classgridfire_1_1approx8_1_1_approx8_network-members.html"/>
 <a href="classgridfire_1_1approx8_1_1_approx8_network.html"/>
 <a href="classgridfire_1_1approx8_1_1_approx8_network.html#a56426da6f1af7eb8a6d1cc70bc8e742a"/>
@@ -466,10 +494,10 @@
 <a href="classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c"/>
 <a href="classgridfire_1_1partition_1_1_ground_state_partition_function-members.html"/>
 <a href="classgridfire_1_1partition_1_1_ground_state_partition_function.html"/>
+<a href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0e75ec9b97529783e07953aaf7d70f68"/>
 <a href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0eff10c7b134d9d4081ad72bbc785c5b"/>
 <a href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd"/>
 <a href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a8afa2aee993eb3ed8d01c887d39b57eb"/>
-<a href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a99c80e2f4ba36e88e08e2abd650a08fb"/>
 <a href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4"/>
 <a href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5"/>
 <a href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245"/>
@@ -500,121 +528,249 @@
 <a href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6"/>
 <a href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c"/>
 <a href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681"/>
-<a href="classgridfire_1_1reaction_1_1_logical_reaction-members.html"/>
-<a href="classgridfire_1_1reaction_1_1_logical_reaction.html"/>
-<a href="classgridfire_1_1reaction_1_1_logical_reaction.html#a019b721d83741acdb16036f00739f87c"/>
-<a href="classgridfire_1_1reaction_1_1_logical_reaction.html#a054994f733b44293b4d79f3a9b207560"/>
-<a href="classgridfire_1_1reaction_1_1_logical_reaction.html#a10cbea11653524dae2f7eafb5c22c90f"/>
-<a href="classgridfire_1_1reaction_1_1_logical_reaction.html#a14a24cb8ea25a1514134acc51197f1de"/>
-<a href="classgridfire_1_1reaction_1_1_logical_reaction.html#a1d2fb3b6a6a1860ace98b32447d1dd1b"/>
-<a href="classgridfire_1_1reaction_1_1_logical_reaction.html#a4ae3806e5e1a802b86a6de292d043476"/>
-<a href="classgridfire_1_1reaction_1_1_logical_reaction.html#a5d410de1053f8028faed1f0d0a6083f5"/>
-<a href="classgridfire_1_1reaction_1_1_logical_reaction.html#a6965906ea33ebd0d615811219d9e9537"/>
-<a href="classgridfire_1_1reaction_1_1_logical_reaction.html#a7fe91d24e20ebc76d612f6ad742f476f"/>
-<a href="classgridfire_1_1reaction_1_1_logical_reaction.html#a81f75f0085f8a5a45169f0b7240c809d"/>
-<a href="classgridfire_1_1reaction_1_1_logical_reaction.html#aa4b8d0d30459f360ff6e29d848e943d5"/>
-<a href="classgridfire_1_1reaction_1_1_logical_reaction.html#adad6f4297c1d8ce487eab092b73cdd32"/>
-<a href="classgridfire_1_1reaction_1_1_logical_reaction.html#add094eda0e71126f8443698d7f3317f4"/>
-<a href="classgridfire_1_1reaction_1_1_logical_reaction.html#af8d23557326e6c8499fa4919ac0bd972"/>
-<a href="classgridfire_1_1reaction_1_1_logical_reaction.html#afa41050855b842c63db16c94d2e9b897"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator-members.html"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a1efafe82d25d36b93a60a6fccbd5ca3d"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a48cec4c8f1e117f73d7e88c3597b4d16"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a7a01f956eccd3a0a90dd08984ca3f009"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a976f84b6f6e33b5f3dd733a771afd7ba"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ac73e9476c89ec7066999b0986bc0d9c1"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ae36a65c29c34b004111d266dc668107b"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#afd3e0e1c5edaf12609b5fc81c379e3e5"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction-members.html"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a05df0657efed55eb4262c7834d81400a"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a091d6d4aa59f788c97f9b5481f46f1b5"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1210917ca1727ea474bb606cf8279edb"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1362d46630f30203027093e35883d1b1"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a14555633289fc3822e927afca7401e49"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1f4acfdb39bb861aaee9f3f28cfc406e"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a222c0662bf5323037c9fdddfb929d4f7"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2567545c89eb847a15909b02fa0f383e"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2f0ee4c0d52db0f58781f90dd39dc0f7"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a37dfb1d460e78e81a6def62e7217e6f8"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a3d1b52076e102d07acb7200a7ee99165"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a4f2bf61b35566e439ac8a48da265d215"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a5c60feacb0ac48b35323d9f688315316"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a6e567323ca019eadcbb9dbb814ebeb0b"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a745b161968f37873b5d40fe6bf9d2118"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a79877bd387bd891e602adff3f99cb4c5"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a7f0d21c80fbbf94ead613e678d44b835"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a8bf7dc26d9f1375625df99bceba08a44"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90b62d922d91832859516450cf8e3876"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90ca346e2321516656b83d863416671e"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a92c3590161c63c6ed4e7650d2b7beee3"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a957b5bfe70e536290ef677a7c5b6643f"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a98095e6536d9a6434c5955f4c169d505"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aa28f151d4ce14e0d6fcbecb07d03cd28"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aade329265a26bdc005c0793ba7a36ab2"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aae06ff559026e3ce242a42cdd888c5a0"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ab1be1d3010ff539b8a911506734fd9cf"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac10e1451d20876f6eab199e127f213c7"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac2d5366d4b5766413db34558dbce3cb3"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad01a15d95878c9edbf57cd9045c4413b"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad2ba6b584cb2df7c15633fca81ce6af1"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#adf203cbae7d7afcd274020b5210b426b"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aeaceef054714e2a9667986406107ba3a"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aed0ea28ed3ba96a9f86aa9db947ec01c"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aee395d13ed3a515d5c1d69bedffca5de"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aefc75b3149bee2da878177279ad375da"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#af515e3587a1050c4bc59657696be5f9b"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#afedb724bf9f1c8fc91d853f2bedb10cb"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate-members.html"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a0beb567afdecd85e336b493ff85326bd"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a292dfe5fdfd3b90a36906f5f609a4c1c"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a46d76ca50ee00198a9f4a873c6ceb874"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a874efa5a57427c8afecd0375094da6e9"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a976a2ef2e58439429c1a6e94c27f4662"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#aad13654ea15547c2c95035c3b7937d58"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ab4f12e8da29d4d158fb0adf2db31b4bb"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae78d2a9b20c22a6ad624f4d968cbf639"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae9d61bdda761da89733408c232d7220e"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map-members.html"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a290da6766a6d3094a5aae8b7cbcd0d70"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a73cc5a9d4a236091bbb40f22ed66b2f1"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a8169adef9b4b3c7552c7a8fdc945cf6f"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a9ab9f6f64455eb46172ebda5e8cc3ec5"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#ad7345da84824495fb21c969c1a9c80f5"/>
+<a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#aecc8c1b92d63da87827879ad5330c11e"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction-members.html"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a0ff112dca1f88070effb6700429b42b4"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a1353d7d2208497b38799bf69f574c275"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a19462806927500f72b7d3f578b3040de"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a211b1332dc12a1fee942523dbc688272"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a495ca800cc1dd224ce2a821a825afafd"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a4c58951d9f7ab252717c226b0da80a9d"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a69508797ca0793f6d3f58de4e0b97667"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a8c6f12a01c6d1fdeba1f0cc73128731e"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a9b1363314159eaf9c56aaa233f5eebd6"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ab5bdbe13239f1180f32fb0a14a60d0a9"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ac21a726884930e6a00792e7c3eb43f42"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#acbfa2d4e23dff6641be21cc1e754be15"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad113b9cb64c449f9449c4cce4fa64076"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad4979f437dc787a5475c3a029804ed99"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ae0b38d499bf0c9ca58461ea2862a7d5a"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#aefaf6c4c32ae54a2882da0e031632a74"/>
+<a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#afe1b95bf9d81f7521b9f19bbd1305d01"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction-members.html"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a06312f834439ccf93012dea53cab47ce"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0b30c49925823c87980b4fca17c8282e"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0f629cbfe95dc5643b5e3724be0db2f9"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a171b690e1abaf23f11a94c39e9f8c944"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a181b2c75af1f2701c43594c5bb2bac2d"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a264112a230817a6080c770686e5bcc01"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a3c0fbdd07f9a837bd031c5bdc58e0e8f"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a445777acbbee2032d83a256181a90e3c"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a498c202a259cbc315997ec68a2cb8a59"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a4e4811436d09afaa4a14c51d9af71f88"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a51f658789f34f96e0e6bd42cef5cbfe4"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a54fde02e7010e806136f976ab64b1740"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a57b2695d152360a6ba08776cc760e3a1"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a5f563b99bb550d5bafa2a989502de019"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a65a12e5f6180873866cfaaf130fd1156"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a661dd461e51c37133f7f9931389fd3cc"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a67c8fa4d5929c7a8cbca9b3d9dd2b704"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7cf403bc519ce39a1af886432a653826"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7e79437a68947e176b8dd7dcbe27baab"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8b6008e0f629329bfc62256f4f081b77"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ca86e0f8f95ffb6d87ca295e44f14c5"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ea3de0412395b7b617c4b71cbc2ab68"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a9205126955ad38f56e8aca3112bc150a"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a96d4ab87de02e9b0be3c248e2e955b4b"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#abab0ed78925789856ebb119d60c6a53d"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#abe189c43e4d509d9d05dd205861ceddc"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ac350a26bdf19d7c1d20db55a226e6063"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#acd16b1daf13456b3523362a37b1bf9b0"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad095aba46860fec0e68386bf04f7f142"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad85ca288289b25d482cbb8e3ff270028"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#adbcb383bac0f47c66251ee1b7c5f539d"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#adfed51cf788a7ed4770cbd5945ddab2f"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae24ad1e38daab536aec6ac72c67e8615"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae2b9b41a598c5f0dcd050b32985ea44e"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae47931948f12816eb890c0db4fff4d68"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae7c930525db447e39b4de18fbc1251a8"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#aeb177f9cf69e4f97c4518a27e6480523"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#af52b42d940f6a09dba5d28898d2b0b1f"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#af775f97f4d5e144e33bc6e0ba58a5851"/>
+<a href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#afec5ccf7a8fb1ba56c8cc852ce858c5e"/>
 <a href="classgridfire_1_1reaction_1_1_reaction-members.html"/>
 <a href="classgridfire_1_1reaction_1_1_reaction.html"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#a0d16572ae2b664374d32ee6c4e22123a"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#a2708d2e8f42159df6605a5948b13c4c5"/>
 <a href="classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a735192a42f72cd68f289493753e1a616"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#a3906a668410e02239f9031b5fc580214"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#a3d7451045d8df41ea98b5e419e0e5ab0"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#a768db057d358240d4825c21869af0792"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#a7ba8c18cd5445aa3499a6fd351183f7a"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#a82c14096308cdc9126ab6d9667febcd2"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#a83c121480533593adfd68c4a67a649f1"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#a94b92308b9619ec20c690e55157786ba"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#aa13cd9097229fcc99128d9286b8f17e6"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#aa2b615e764bb005e526ca9327319c735"/>
 <a href="classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#ac426457cf0a54a15b206549422083bac"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec"/>
-<a href="classgridfire_1_1reaction_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set-members.html"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a05f71d318564d880079fd6c96d59ae21"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a128660f5fbc67054f73811ed2982d24d"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a13e003529a17fa61aafdce3abd2dc773"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a1596de3439735a45ac344fa85ace6c82"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a272800016c83f259f5c6a92dc797353c"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a339dbbf883b6ae20e33d9782d8376bcf"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a3a4c2448865580001fd3c797b9f56979"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a443ec5d7138764b32975232e13071ccf"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a47265467dbf2c324ce3e4c85ebbaa6a7"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a54c8cd7c34564277fe28eefc623f666e"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5962968fe478c79250e9d88d80a87600"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5fda3af5ea9ae0ecfb60a61a9e07f5b4"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a638067a3e55ec2a422206055881aaaad"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a7777ecd0f594fdf66ce57d22610fad3c"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a87257704009fcd57b553f86cdaacb597"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a89c4c5af12aef7fbfc24316c88237e22"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a9def4c9a3a7a03625b7c467fe7440428"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#aac76ec883b4ecebb2a94b2485dae7105"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ab8cb5fbce6b819b9e4e44b0c2db54c6f"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac128da7417955ef8c5cb2bde5a1293c9"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac42606350d7557106f7954b1f114c128"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac510dce14a6033551318c0c7b241f3c8"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac6fcc5b08938b73ff6dac680e5bf28d9"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad19adbee44a71559a53785e3b1fc7e92"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad870856d206d93f27125c88d44ff9e34"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ada1d1880be53b81a9ed7b966fd6ade5a"/>
-<a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#aee42bb25973dadc6629bdb5cb1db6369"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#ab28bf4f9417ecabcc8350bae449fedd5"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#ab7888b57507d6d27de6e5fcaea40fff5"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#ab95ce7fb022a9432bdc77f14679221ee"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#ac7b08c61cdc97268b9442afec4d08dad"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#ad49f4cad024db72c966d949c75f1ce4d"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#ae2a1b0395ac127c792a8049cd0bcc249"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd"/>
+<a href="classgridfire_1_1reaction_1_1_reaction.html#af8303d67df61fc9e31ce054f0e8a3e14"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set-members.html"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#a2f6b165c86634a68f35032c2267255f8"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#a436f9c4b8f8a4e115b19728d57d8e105"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#a789dee5d93810b85062e59508fe0adea"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#a896b4e492ef596d9174aeda4b59c46cd"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#ab9edff40316b42ce41b2f895962c1041"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#acfe2341ae1f016ad82098b6f5a1efc45"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#ad7e95562ea0860bf492b447341f41fb5"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#adb73fe9ff0178359409e2bea46a620c2"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111"/>
+<a href="classgridfire_1_1reaction_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb"/>
 <a href="classgridfire_1_1screening_1_1_bare_screening_model-members.html"/>
 <a href="classgridfire_1_1screening_1_1_bare_screening_model.html"/>
+<a href="classgridfire_1_1screening_1_1_bare_screening_model.html#a0ac3685a90c1e65a84e03cfb2fed29e5"/>
+<a href="classgridfire_1_1screening_1_1_bare_screening_model.html#a48a3392d735c61b15b4855c823acfada"/>
 <a href="classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96"/>
-<a href="classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a"/>
-<a href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60"/>
-<a href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99"/>
+<a href="classgridfire_1_1screening_1_1_bare_screening_model.html#ad252ce1de82401bab24747aabf0c8a3a"/>
+<a href="classgridfire_1_1screening_1_1_intermediate_screening_model-members.html"/>
+<a href="classgridfire_1_1screening_1_1_intermediate_screening_model.html"/>
+<a href="classgridfire_1_1screening_1_1_intermediate_screening_model.html#a765e369256282f0f25e66e13c33dcbd9"/>
+<a href="classgridfire_1_1screening_1_1_intermediate_screening_model.html#a794b7781f07343383da3894208cfbfa9"/>
+<a href="classgridfire_1_1screening_1_1_intermediate_screening_model.html#a86a218ce82306ed582296cbeb3de0250"/>
 <a href="classgridfire_1_1screening_1_1_screening_model-members.html"/>
 <a href="classgridfire_1_1screening_1_1_screening_model.html"/>
 <a href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d"/>
-<a href="classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22"/>
-<a href="classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde"/>
+<a href="classgridfire_1_1screening_1_1_screening_model.html#a1da8242c7591ab32453d1e0109999d6c"/>
+<a href="classgridfire_1_1screening_1_1_screening_model.html#ab08c4490f9da18254a7c6f29be1f62ce"/>
 <a href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7"/>
 <a href="classgridfire_1_1screening_1_1_weak_screening_model-members.html"/>
 <a href="classgridfire_1_1screening_1_1_weak_screening_model.html"/>
 <a href="classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f"/>
-<a href="classgridfire_1_1screening_1_1_weak_screening_model.html#a2695206d46b9d2c2503f8e58c44df88f"/>
-<a href="classgridfire_1_1screening_1_1_weak_screening_model.html#ac6bc78769670a460af1ff88284cb8ad4"/>
-<a href="classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c"/>
-<a href="classgridfire_1_1solver_1_1_direct_network_solver-members.html"/>
-<a href="classgridfire_1_1solver_1_1_direct_network_solver.html"/>
-<a href="classgridfire_1_1solver_1_1_direct_network_solver.html#a053c9c1343af8f30ced69707e1d899e3"/>
-<a href="classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079"/>
-<a href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a"/>
-<a href="classgridfire_1_1solver_1_1_direct_network_solver.html#a171bd0c8c292da79ed41f6653fdd47df"/>
-<a href="classgridfire_1_1solver_1_1_direct_network_solver.html#a2cc12e737a753a42b72a45be3fbfa8ab"/>
-<a href="classgridfire_1_1solver_1_1_direct_network_solver.html#a44fbc45faa9e4b6864ac6b81282941b5"/>
-<a href="classgridfire_1_1solver_1_1_direct_network_solver.html#a6bb0738eef5669b3ad83a3c65a0d1e96"/>
+<a href="classgridfire_1_1screening_1_1_weak_screening_model.html#a6a215d082b0d05126fb2b19fd1983446"/>
+<a href="classgridfire_1_1screening_1_1_weak_screening_model.html#a8b0590814e7058b4ff3f0cd6f4124773"/>
+<a href="classgridfire_1_1screening_1_1_weak_screening_model.html#aa9f95ba8c052dacb72295775516b7e5f"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy-members.html"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a0717afcde6fdb71b12490bbcadb5fdb4"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a14c620ef75749c8ef3dfdb84132e5620"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a1f007d68e808ba61f8425d0487432c0d"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a202fe9e6499aac5f6813e036ee4ed2d5"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a2fa56a2e7a63d31d2afa895a5e4fe827"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a38e0f02ba54e217e9638260d9651b1c3"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a46dacb6eb075f2aadac0e56972deeaa3"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50c7b4e1ff2c88ce424c745478414e30"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50d8f309ca897fa83b16db0a1701b339"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a53c14f504e5b7827b4bab4a0a7a13341"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5867eb99b00815b8b4f710cb48904dbe"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5dfb7a2ce0008d41dee4aa596a4e1ce4"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a77638ef3d2279009e5a57bbd3f0eb63b"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a7f6786780137de1a136e081c537a9667"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a87b7b39e2a15cc30b118c8e6fda9a1a6"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a89c537c2f34ba3e202374304b7e5990a"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a924a541da3b205818f90b50d675631c0"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aae19c1ec467051404a7bf1d4c7066c22"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab5a8fa55e36685cac50c1dbdd8dbfa57"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab7495898e893640670f49308a105658f"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab8224d205ea3a28d9c723631c2f00b53"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ac57a4f62d95d769c379470e680e6882d"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aca2d01a907c3bb828f9f99ad05506578"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ad26879fafcee9ecb21cc7c5ac0db1692"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ae13fc9c21f595edbee1c9b7debaa61b3"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af3e470b5a6f982c107785c64b169a992"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af4a2f003a4c4c06b4b72840f2d445f81"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af500df838024c82724eaf7fe1cb9b8e8"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afc6c55237df4af240c4c842305085d91"/>
+<a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afd1053d0827512b6831ee15f14488c20"/>
 <a href="classgridfire_1_1solver_1_1_network_solver_strategy-members.html"/>
 <a href="classgridfire_1_1solver_1_1_network_solver_strategy.html"/>
 <a href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505"/>
@@ -623,6 +779,162 @@
 <a href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8"/>
 <a href="classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f"/>
 <a href="classgridfire_1_1solver_1_1_network_solver_strategy.html#ae09169769774f17df8701c42a64ed656"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger-members.html"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger.html"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger.html#a01033721e8f5d90483d65c904399cf96"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger.html#a1714656e907edfcba2d354ff5d7c9ceb"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger.html#a2436d8643911ade907e03fb29531ceaa"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger.html#a2dcd635c6bdbcfe517adca6e2bd5c408"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger.html#a2ee18348ca65cc1aa56eb41292a39bc5"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger.html#a43e6a9c01b163ab92a0b413bfba52ef5"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger.html#a62f7dbbcf0554caa68e3d778580b3c1d"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger.html#a7f88c1139e1b05baed44614104d601b4"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger.html#a969738baf0bda97664715937d4bc403e"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger.html#a99be74b126d50c15d21c0724d933af87"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger.html#aaefdfa86856f9f7839b6a7fdffa4a579"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger.html#ab78539e5cd88194ab9e98434793eae3f"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger.html#addfd61f8cb234881f535fb8f4d618d74"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger.html#ae3ff88ddb15d04e798fc03c6c941e312"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger.html#af8ee88421d0dfd92de6df96d686ece38"/>
+<a href="classgridfire_1_1trigger_1_1_and_trigger.html#afffb4281569963183d7db3ed1568eb3a"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger-members.html"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a021c30d6db015bb88a70af348a5dd336"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0a5c2c5aedc779c1535d3839c6a6596e"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0dd783afab7ef6005f0241f9de7b31f6"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a27f1fd8c8a93576f83a4f3320469c83a"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a3bf0d69122f801deca4b62db47262d9b"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a4a834d24286f9204995bf78fb69f35dc"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a652ba8d1ac36b9713f426eedf2b1ead0"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69e5a3061926e1cd36fbd0a5285fa0a7"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69fbb099f8d13d39602f58fa8aa8e7f2"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a7e5568c9d7799b7f80ad0d3efe2cd143"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a80d6f82095c3b5fdbc46776e183cdb1f"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a87b6e54f3a0536d20709d7e746ec575d"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#aab88715f3c94437ca7f3fcb1698c69de"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#ab0a33f49be02d34b27f75edf75dbc06d"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#abf218d255bde157540b51cd6a54f6eb1"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae28e54330d575d9d1d3d8ebc6e7a6f75"/>
+<a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae7776f4a526db3245e64a74a3b0172d3"/>
+<a href="classgridfire_1_1trigger_1_1_logical_trigger-members.html"/>
+<a href="classgridfire_1_1trigger_1_1_logical_trigger.html"/>
+<a href="classgridfire_1_1trigger_1_1_not_trigger-members.html"/>
+<a href="classgridfire_1_1trigger_1_1_not_trigger.html"/>
+<a href="classgridfire_1_1trigger_1_1_not_trigger.html#a0d7818e59a8d86e86053bcb6d5d7d2b8"/>
+<a href="classgridfire_1_1trigger_1_1_not_trigger.html#a2f9b0d6a6ac54f6371c5a208c06826ea"/>
+<a href="classgridfire_1_1trigger_1_1_not_trigger.html#a4828599aae5ff37f4c82e51fe192bed3"/>
+<a href="classgridfire_1_1trigger_1_1_not_trigger.html#a846432abf33c7602af0fbb5475c0ad32"/>
+<a href="classgridfire_1_1trigger_1_1_not_trigger.html#a86404f57e0e0683fc56e0e49321e5e3b"/>
+<a href="classgridfire_1_1trigger_1_1_not_trigger.html#aa1253080cd57cdf0be6780773ce6c73c"/>
+<a href="classgridfire_1_1trigger_1_1_not_trigger.html#abfb3eb7befba646ce9f11f36a63750ae"/>
+<a href="classgridfire_1_1trigger_1_1_not_trigger.html#acc3bd2938f7746997fb1d255681d8b20"/>
+<a href="classgridfire_1_1trigger_1_1_not_trigger.html#ad8166350329db3e1f50954afbb311a35"/>
+<a href="classgridfire_1_1trigger_1_1_not_trigger.html#adb9c36fa46a30c28e68c59a7d3bd825d"/>
+<a href="classgridfire_1_1trigger_1_1_not_trigger.html#ae2d27d72af9e1fbf711a58e4583b43a3"/>
+<a href="classgridfire_1_1trigger_1_1_not_trigger.html#ae453a72df20fdd416443ef7867f86b92"/>
+<a href="classgridfire_1_1trigger_1_1_not_trigger.html#ae4830ed152643770b0888b040475b000"/>
+<a href="classgridfire_1_1trigger_1_1_not_trigger.html#afa4173490171d1251cc1757b92841755"/>
+<a href="classgridfire_1_1trigger_1_1_not_trigger.html#afe337517b77e5433d92ded3a64565141"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger-members.html"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger.html"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger.html#a062af4f567dc48c088f1fcfb64cc79ec"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger.html#a0b3a7f45604dbb27e832d9559dd20997"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger.html#a30dec370b61a5f0562956394b89e8f89"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger.html#a35d519d5266c68b696b779b275574ebf"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger.html#a6da04b5b15371f7087be03bb337dbdd6"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger.html#a775dac97d109c5fcd5c0287ca98f308c"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger.html#a7bca0da16353f4b04a2f40fb29c07922"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger.html#aaf4f8a090bdd10eeba0b7849fa8ed888"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger.html#ab42043e55c81bac5d3f981bc139579de"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger.html#ac8be54d91e77ed16ae3cca2417d82e0a"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger.html#accb56630df2f57400467d315c61dede6"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger.html#adc6f560d9199455ba98d85eadfe02847"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger.html#ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger.html#af595a5daab0f5b3ffc450c6de6737517"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger.html#afc7d3eae8306ee383d76997ac3803327"/>
+<a href="classgridfire_1_1trigger_1_1_or_trigger.html#afe30f95de39c1375557d032b8a8111f9"/>
+<a href="classgridfire_1_1trigger_1_1_trigger-members.html"/>
+<a href="classgridfire_1_1trigger_1_1_trigger.html"/>
+<a href="classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc"/>
+<a href="classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88"/>
+<a href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda"/>
+<a href="classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7"/>
+<a href="classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f"/>
+<a href="classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d"/>
+<a href="classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7"/>
+<a href="classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea"/>
+<a href="classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger-members.html"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0d3b7c1d1057f442417c2f8c2a7177c5"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0e1ad148f9f3232992a4b16e440c249a"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a14b1884a9014df33a1ec90dd3433c0b9"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a179cb09a91d5c638d7a347137b208767"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a32980aaf6d9c7632c024b4b74b1d9e70"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3855b15459217383647ecdf12bc35775"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3af973e466ba62ebf1e41c608355e327"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a4885bdcc719a0f8c8394905893739b96"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a594893c029f044be3119118808470f7a"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a6dc334b85ffb822880c6740dc457ea52"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a9b782cbf033ed2023da6b2d55dcefc4e"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#acd55d04da377c8bf4af3ea2fcf2f1918"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#ad0dd92f9da6c291c3bd57c0983940035"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#aeac341c1e854d561a29aa39ad306d5d7"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#afbd9258d65370bbc965e799c82f0e1c0"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger-members.html"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a00ede9fff51a8318913fd2ed504c1007"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a0f412b8f788ab7990e353d62ab7d9a16"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a16e9b87a8abb05bb6b5410903eb49e91"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a235f84a37370a1ca2226fb881b4051c7"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a273eb8a3e80d1235d2b3f252e55c5b50"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a2b1b4a9ef137e76d39e7a7dcb6cf725d"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a3004a10bb89ecd7b2ba6103c9f5d4b96"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a34d285584ea96f71b99eefad8c738296"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a468bf58f66417493501c59d7a8aabc98"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a50df7fefee167390522aa258fa6ee960"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a51ac3899010c2790fc98801ffba9407e"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a87fc9fe6bd8762f148c858452ec30043"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a9dfab0b765d3a4c362cecd860d59f58a"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab6215873390f6bedab5c9f83b990b5e0"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab80799eb7c80b3b20c1a7e7f9e1f5030"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab93cb25bbebb159a8608a737bd972abd"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#af4034fa431e6c88fd05c50cce31b2fa0"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger-members.html"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a021c760717efef3fc3b415dee6d4840b"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a04598611b0807cad395bdd2fbc41a6c2"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a0fe6af73b11b820561bd4e5552890d4e"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a171e6dee7f7d8275b3e8875eaeb0850d"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a22d8bc7aacbc388108225c26158e918c"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a25f6ac369c590a8370270bdc70545171"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a290e5643eea08726d2fd44a1cd5617d0"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a8ba5a942bb61347851030d1eb6bbaa74"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a94bb1de08a5ff55e1874f595f8c8965c"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa03c13813065f720cf698c240f07d559"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa4162916f562b4d7ea0205d6f3e6f917"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ab7d86e5c89a848cf238141393fe3a8de"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#abe902b2a42a6451f64497e075b0e0b25"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad2a7c2567b100f97a024f65818ecefed"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad4cc7113574f71905bc93cc40024b4bd"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ae18e08a0bd72b68605d64e4d84355f79"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ae47a4f822f92774f6dc780ae74f12066"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#af6bff6a484e8729445c26620b489665d"/>
+<a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aff23db33140aa6a5a2ad36eda77b833d"/>
+<a href="classgridfire_1_1utils_1_1_column-members.html"/>
+<a href="classgridfire_1_1utils_1_1_column.html"/>
+<a href="classgridfire_1_1utils_1_1_column.html#a5bd0ad730a684e1a8b583c5c27cca6e8"/>
+<a href="classgridfire_1_1utils_1_1_column.html#a7d7e4f4cf6f8e03725afeb9f664321b8"/>
+<a href="classgridfire_1_1utils_1_1_column.html#a7ff9084a0486fb8b08edfe866480568b"/>
+<a href="classgridfire_1_1utils_1_1_column.html#aaa99c4d00c3b79e37f2e73e7c6854758"/>
+<a href="classgridfire_1_1utils_1_1_column.html#aaddf58469be3e3fd3bee0f4f660fe9e0"/>
+<a href="classgridfire_1_1utils_1_1_column.html#ad6a4f9aee1321e90896e5f4583d7311f"/>
+<a href="classgridfire_1_1utils_1_1_column_base-members.html"/>
+<a href="classgridfire_1_1utils_1_1_column_base.html"/>
+<a href="classgridfire_1_1utils_1_1_column_base.html#a4dd5f1409d3190eab9ba07eb6e611248"/>
+<a href="classgridfire_1_1utils_1_1_column_base.html#a5e07c8e33c96ee8095ebefbf9b75cb36"/>
+<a href="classgridfire_1_1utils_1_1_column_base.html#a704c1fc03271c14fc9f3da43612a1589"/>
+<a href="classgridfire_1_1utils_1_1_column_base.html#ab6e4cb14c8a0ad7b6b9ad0fbde766cba"/>
 <a href="concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html"/>
 <a href="conceptgridfire_1_1_engine_type.html"/>
 <a href="conceptgridfire_1_1_is_arithmetic_or_a_d.html"/>
@@ -633,7 +945,9 @@
 <a href="dir_1ae9febcce3c81c54e014e2202672ae2.html"/>
 <a href="dir_1c671bae89ad45c4f6571bd7c3fca7f2.html"/>
 <a href="dir_1d1d50ce0d70b163d7d102a960190628.html"/>
+<a href="dir_230a420a279f78b45ea47b2d650bf1a7.html"/>
 <a href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html"/>
+<a href="dir_3c6e26120bd25666a475751afc8a34bc.html"/>
 <a href="dir_3cc0b3e3c66436f74054a789a4a47fbc.html"/>
 <a href="dir_43d540904cac5d711ae55af9d63e6471.html"/>
 <a href="dir_49e56c817e5e54854c35e136979f97ca.html"/>
@@ -642,53 +956,65 @@
 <a href="dir_5c0d64f70903e893b1efe571a4b8de29.html"/>
 <a href="dir_64012712bac8d4927da7703e58c6c3c3.html"/>
 <a href="dir_65bc51589f8002bfcb72faf47ab41180.html"/>
+<a href="dir_67aa14af464fbd247881f6980be7deb5.html"/>
 <a href="dir_68267d1309a1af8e8297ef4c3efbcdba.html"/>
+<a href="dir_6ccae78e9032a1b4db4873aea5f3b43d.html"/>
 <a href="dir_6f67cad5a3dd5daef2b4bab22419acbf.html"/>
 <a href="dir_736d89e8e2b688d729ae4656e8c69720.html"/>
 <a href="dir_7eae81c2ec58ffa76af06bb25bb86137.html"/>
 <a href="dir_80d0745b866022f2047f807b3376dff7.html"/>
 <a href="dir_87d18a4dc5174905bfd7d2dc734defe6.html"/>
+<a href="dir_897cfbcdbf2b76d535de4ec754728fa0.html"/>
 <a href="dir_8e34b6fea5a3d13256b367f27bc2135d.html"/>
 <a href="dir_902e06e9d82d80b06df7be6e417fa9ee.html"/>
 <a href="dir_97105ebeaecd797c90bf23079fd9b0e6.html"/>
 <a href="dir_9f35e0f3e3878d201f80e9b6c966a769.html"/>
 <a href="dir_a2537f6f0ba382cc4200a69fb7d9b7da.html"/>
+<a href="dir_ab918a70d5de27403bd1202d71acc71b.html"/>
 <a href="dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html"/>
 <a href="dir_aff155d61c3b73b9ab7dcdc908c4d49e.html"/>
+<a href="dir_b0553efdd4ad7f265c0580564941af0c.html"/>
 <a href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html"/>
 <a href="dir_b854c27c088682f074a57cfa949846df.html"/>
+<a href="dir_b893969db6254951682857c720518fa8.html"/>
 <a href="dir_bf5ef66fceb9aacde9848923f7632729.html"/>
 <a href="dir_bfff093b02c380358955f421b7f67de5.html"/>
 <a href="dir_c34d5e8363cf0aa3fabc4f3fad3412a4.html"/>
 <a href="dir_c73541f51459c9e567d01a066f229f1c.html"/>
 <a href="dir_c85d3e3c5052e9ad9ce18c6863244a25.html"/>
+<a href="dir_c99e86cd0291aa23d2204e664fe571c1.html"/>
 <a href="dir_cd87a60aa1dbf4ee960e0533fd7a9743.html"/>
 <a href="dir_d0a49494bbb6e91de214e6669adf5efa.html"/>
+<a href="dir_d2ba15782ddae84c3d0c5f0e63bda236.html"/>
 <a href="dir_d5492b42d970deba31f48df1b35a6c47.html"/>
 <a href="dir_d70391a28a381da2f0629437a1b6db28.html"/>
+<a href="dir_da65b9a371696ae0281f77edf1c03876.html"/>
 <a href="dir_dd8201c056cb17022d2864e6e5aa368d.html"/>
 <a href="dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html"/>
 <a href="dir_e87948a39c0c6c3f66d9f5f967ab86bd.html"/>
 <a href="dir_f2d7b0c77cb2532170ac94ead6e4ba70.html"/>
+<a href="dir_f4383b1846ef599868e873d917f1344c.html"/>
 <a href="dir_f575fd282ecf3769a887e0c3d3cafd55.html"/>
 <a href="dir_fe5109f07276e0a4a472af6b22fd99c7.html"/>
 <a href="dir_fe7d6b610561b6ccbae8c0cd892464cf.html"/>
 <a href="dir_fedd162cb41c94f7e299c266e75251fd.html"/>
 <a href="doxygen_crawl.html"/>
+<a href="dynamic__engine__diagnostics_8cpp.html"/>
+<a href="dynamic__engine__diagnostics_8h.html"/>
 <a href="engine_2bindings_8cpp.html"/>
-<a href="engine_2bindings_8cpp.html#a01ff627d4ef6a21b3323cd383dd29841"/>
-<a href="engine_2bindings_8cpp.html#a4066aaf2dca39ee1ed37ad53169f1cdf"/>
-<a href="engine_2bindings_8cpp.html#a61b016667b7477d898be2a2a5bc7cab8"/>
-<a href="engine_2bindings_8cpp.html#a74a027923ac27f235cf565f8d2a355bd"/>
-<a href="engine_2bindings_8cpp.html#a884aac3c3f2e8c62843c69329052d642"/>
+<a href="engine_2bindings_8cpp.html#a73d427751e6a64952d52e7c2cc84d065"/>
+<a href="engine_2bindings_8cpp.html#a766b8bf2c08f2e81486752261ec89642"/>
+<a href="engine_2bindings_8cpp.html#a7ba5eb780fc02dab2b7be388ffa084f8"/>
+<a href="engine_2bindings_8cpp.html#ac12de48f4164b679dd7afb03c83ec4bf"/>
 <a href="engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c"/>
+<a href="engine_2bindings_8cpp.html#aef9864cec8e0891ee46c8a0d76de2c93"/>
 <a href="engine_2bindings_8h.html"/>
-<a href="engine_2bindings_8h.html#a01ff627d4ef6a21b3323cd383dd29841"/>
-<a href="engine_2bindings_8h.html#a4066aaf2dca39ee1ed37ad53169f1cdf"/>
-<a href="engine_2bindings_8h.html#a61b016667b7477d898be2a2a5bc7cab8"/>
 <a href="engine_2bindings_8h.html#a73a2ec4150b3954550f16b97102ec993"/>
-<a href="engine_2bindings_8h.html#a74a027923ac27f235cf565f8d2a355bd"/>
-<a href="engine_2bindings_8h.html#a884aac3c3f2e8c62843c69329052d642"/>
+<a href="engine_2bindings_8h.html#a73d427751e6a64952d52e7c2cc84d065"/>
+<a href="engine_2bindings_8h.html#a766b8bf2c08f2e81486752261ec89642"/>
+<a href="engine_2bindings_8h.html#a7ba5eb780fc02dab2b7be388ffa084f8"/>
+<a href="engine_2bindings_8h.html#ac12de48f4164b679dd7afb03c83ec4bf"/>
+<a href="engine_2bindings_8h.html#aef9864cec8e0891ee46c8a0d76de2c93"/>
 <a href="engine_8h.html"/>
 <a href="engine__abstract_8h.html"/>
 <a href="engine__adaptive_8cpp.html"/>
@@ -701,6 +1027,8 @@
 <a href="engine__graph_8h.html"/>
 <a href="engine__multiscale_8cpp.html"/>
 <a href="engine__multiscale_8h.html"/>
+<a href="engine__partitioning__trigger_8cpp.html"/>
+<a href="engine__partitioning__trigger_8h.html"/>
 <a href="engine__priming_8cpp.html"/>
 <a href="engine__priming_8h.html"/>
 <a href="engine__procedures_8h.html"/>
@@ -710,14 +1038,14 @@
 <a href="error__engine_8h.html"/>
 <a href="examples.html"/>
 <a href="exceptions_2bindings_8cpp.html"/>
-<a href="exceptions_2bindings_8cpp.html#a15a0d54e4fe015a87d9f7a63284c2958"/>
+<a href="exceptions_2bindings_8cpp.html#a5566602745756f64f21905217b6d21fd"/>
 <a href="exceptions_2bindings_8h.html"/>
-<a href="exceptions_2bindings_8h.html#a01725278af607be0d8f5a2d892a5ef73"/>
+<a href="exceptions_2bindings_8h.html#a2a0ce1da699ce25f3afdce57cde65471"/>
 <a href="exceptions_8h.html"/>
 <a href="expectations_2bindings_8cpp.html"/>
-<a href="expectations_2bindings_8cpp.html#ac6720822f6ad76636adbc1ae6febc2c2"/>
+<a href="expectations_2bindings_8cpp.html#ad8b382f2ef7888e5b49bcc117439d843"/>
 <a href="expectations_2bindings_8h.html"/>
-<a href="expectations_2bindings_8h.html#a12e0304a6d29af179118a29c8ea93dc0"/>
+<a href="expectations_2bindings_8h.html#ac4570540d44fb7e3136f63448fc2c22c"/>
 <a href="expectations_8h.html"/>
 <a href="expected__engine_8h.html"/>
 <a href="files.html"/>
@@ -738,7 +1066,6 @@
 <a href="functions_func_g.html"/>
 <a href="functions_func_h.html"/>
 <a href="functions_func_i.html"/>
-<a href="functions_func_j.html"/>
 <a href="functions_func_l.html"/>
 <a href="functions_func_m.html"/>
 <a href="functions_func_n.html"/>
@@ -789,6 +1116,7 @@
 <a href="functions_vars_s.html"/>
 <a href="functions_vars_t.html"/>
 <a href="functions_vars_u.html"/>
+<a href="functions_vars_v.html"/>
 <a href="functions_vars_y.html"/>
 <a href="functions_vars_z.html"/>
 <a href="functions_w.html"/>
@@ -796,6 +1124,7 @@
 <a href="functions_z.html"/>
 <a href="functions_~.html"/>
 <a href="globals.html"/>
+<a href="globals_defs.html"/>
 <a href="globals_func.html"/>
 <a href="globals_type.html"/>
 <a href="globals_vars.html"/>
@@ -860,9 +1189,9 @@
 <a href="index.html#autotoc_md8"/>
 <a href="index.html#autotoc_md9"/>
 <a href="io_2bindings_8cpp.html"/>
-<a href="io_2bindings_8cpp.html#a7f552627cbe94906e0ee98b121e77862"/>
+<a href="io_2bindings_8cpp.html#a3f76dbefdeeb3b49828ce36586899695"/>
 <a href="io_2bindings_8h.html"/>
-<a href="io_2bindings_8h.html#a1d91b8298302b9f5401bf06c22651df4"/>
+<a href="io_2bindings_8h.html#aba28f9bd688764ab1905af9d40d4b428"/>
 <a href="io_8h.html"/>
 <a href="logging_8cpp.html"/>
 <a href="logging_8h.html"/>
@@ -883,19 +1212,23 @@
 <a href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a5105376c2b90747e00bed5bf2953dd56"/>
 <a href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a928d0f1285ee7d36c1c2fa1b1b7a164c"/>
 <a href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75"/>
+<a href="namespacegridfire.html#a023dc09e48b62e3f93f9a8b70cb2c63f"/>
 <a href="namespacegridfire.html#a02be158966bf82a91b159b7a962c3fa5"/>
 <a href="namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc"/>
+<a href="namespacegridfire.html#a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f"/>
+<a href="namespacegridfire.html#a384323338f13166d87c7ac047434bd38"/>
 <a href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6"/>
+<a href="namespacegridfire.html#a3cd451f4b7a7bc7c2d7007ebb343e9ac"/>
 <a href="namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37"/>
 <a href="namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea"/>
 <a href="namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182"/>
 <a href="namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2"/>
 <a href="namespacegridfire.html#a4e9cabad30b57d636c2f0d73d8cc6bb4"/>
-<a href="namespacegridfire.html#a745c6568723947f8e1ff874c9d3f4733"/>
-<a href="namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d"/>
+<a href="namespacegridfire.html#a553717597efebcea94232a4a1d80e31d"/>
+<a href="namespacegridfire.html#a58a036e8883e75a8abd3e18798563f71"/>
 <a href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178"/>
+<a href="namespacegridfire.html#a8995b949592d59850e45a3fd27306369"/>
 <a href="namespacegridfire.html#a8b245f261cd8d1711ae8d593b054cf98"/>
-<a href="namespacegridfire.html#a8b632637f62614f509cde0e404a79054"/>
 <a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154"/>
 <a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931"/>
 <a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287"/>
@@ -904,15 +1237,10 @@
 <a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a"/>
 <a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e"/>
 <a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f"/>
-<a href="namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2"/>
 <a href="namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06"/>
-<a href="namespacegridfire.html#aa86f08712565f278adacc7cd2361eb31"/>
-<a href="namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f"/>
-<a href="namespacegridfire.html#ad838ce3fb6cc02c3fd90b924a0dd91b1"/>
+<a href="namespacegridfire.html#ab6e14208fad69f4031411a9346c12397"/>
 <a href="namespacegridfire.html#ada3c137c014ecd8d06200fea2d1a9f50"/>
 <a href="namespacegridfire.html#ae01b1738df1921db565bcbd68dd6cf64"/>
-<a href="namespacegridfire.html#aedddb89e400a6111f69bfe0c3fd4214e"/>
-<a href="namespacegridfire.html#aefc63ddbfe97dcb4178c94dfd1c4b256"/>
 <a href="namespacegridfire_1_1approx8.html"/>
 <a href="namespacegridfire_1_1approx8.html#a12cb71ba6ed03750af9e7659464197ea"/>
 <a href="namespacegridfire_1_1approx8.html#a16739298c01e56967ce784a9a957439f"/>
@@ -937,6 +1265,10 @@
 <a href="namespacegridfire_1_1approx8.html#ad7a6f894fa4bdeebb4cae0eba3b2c210"/>
 <a href="namespacegridfire_1_1approx8.html#aed8175751b4920a53922f87f8c0e63c4"/>
 <a href="namespacegridfire_1_1approx8.html#af7d9b901dbb3c88c151d927912d5121f"/>
+<a href="namespacegridfire_1_1diagnostics.html"/>
+<a href="namespacegridfire_1_1diagnostics.html#a066ee899bd259062716f25abae3890b0"/>
+<a href="namespacegridfire_1_1diagnostics.html#a11c0d538e7244bee168d7f9217442128"/>
+<a href="namespacegridfire_1_1diagnostics.html#a9d95a6c9c4a942d71ff4c8046fe4107a"/>
 <a href="namespacegridfire_1_1exceptions.html"/>
 <a href="namespacegridfire_1_1expectations.html"/>
 <a href="namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87c"/>
@@ -955,17 +1287,47 @@
 <a href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728ca4ca5b5dcd7343b06b860f05f3bc454b1"/>
 <a href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335"/>
 <a href="namespacegridfire_1_1partition_1_1record.html"/>
+<a href="namespacegridfire_1_1rates.html"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550a3659baf2b06bba6c02bad8316d517761"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550a9a10f345b0f755d461a8673a5e9ef6b4"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4a1516ba0949425312ba92ea385c80dc7a"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4a9a10f345b0f755d461a8673a5e9ef6b4"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4acc038b1c5dbfcede2eaa525fe0e2379d"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea1448b5920e7c95f07cbc08d3ba5b9746"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea5257ed2407fcbb45ab05897fdea80c2b"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#a7a262a98e1956c33645bad4eb4e40c7a"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#a81f6133710abef28d9d2b030fdbaaeef"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#ac48364695089056d9a9b10689c4338e7"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a12122315f1a94a10826f77a8fd949a94"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a2f146a0cd66e2d010c8802852db26759"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7ae0be5539e1cf1c424806baa62540aa9d"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70ca"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa2712e9cfc69c4ee0c4ed136338acb6cc"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa3fde0fbf2166dfb3dd60458c535699d8"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa8c2cdafd7125a278e6e0da4c04e29d9e"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa8d99b7a21c927a7b8274caaf23290de6"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caaabd6fefb3f84f632c3968acfcd76d554"/>
+<a href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caae6f2e17ddd61e72e331faf8700bbedef"/>
 <a href="namespacegridfire_1_1reaclib.html"/>
 <a href="namespacegridfire_1_1reaclib.html#a02ff11b88be94392151873e06a30b276"/>
-<a href="namespacegridfire_1_1reaclib.html#a5dba5efc372d2a9e9e846dfd6563f3c0"/>
+<a href="namespacegridfire_1_1reaclib.html#a1f75b17a44c23261a221f7558b1a63d9"/>
+<a href="namespacegridfire_1_1reaclib.html#a5f2326f2f76cb1895d6cf5daed9b030b"/>
 <a href="namespacegridfire_1_1reaclib.html#a6bb94d5adc7bb9db5a67f770f7453e63"/>
-<a href="namespacegridfire_1_1reaclib.html#a91c7971c9d0a2971b9a6fa4d841c761d"/>
 <a href="namespacegridfire_1_1reaclib.html#af6ff0dfe7ffe34c73ba9acbab5ef8a66"/>
 <a href="namespacegridfire_1_1reaclib.html#afc0deac6cbef076e8884e66fd3ab66e0"/>
 <a href="namespacegridfire_1_1reaction.html"/>
-<a href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31"/>
-<a href="namespacegridfire_1_1reaction.html#abfcfafc0cda0c3ed56930a12e7ead67f"/>
-<a href="namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1"/>
+<a href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e"/>
+<a href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74ea32b0fb6c82a2ec42865b2c823216baa9"/>
+<a href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74ea32c7d8943bec86a6d7d5e03598670ca8"/>
+<a href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74eaf9885ed04411bef7b70f78b643c6a220"/>
+<a href="namespacegridfire_1_1reaction.html#af34403cccdb4a091e979f0f895be2f8c"/>
 <a href="namespacegridfire_1_1screening.html"/>
 <a href="namespacegridfire_1_1screening.html#a6ca8556d27ac373e176f5b23437c416e"/>
 <a href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25"/>
@@ -974,8 +1336,14 @@
 <a href="namespacegridfire_1_1screening.html#ae7dd1a7ccb7bf3c05084094ab008d8a3"/>
 <a href="namespacegridfire_1_1solver.html"/>
 <a href="namespacegridfire_1_1solver.html#a8118d08bc25e439754b43a3f5ecc1db3"/>
+<a href="namespacegridfire_1_1trigger.html"/>
+<a href="namespacegridfire_1_1trigger.html#a5e0fe21f3356426f26b109cdeb1edcd9"/>
+<a href="namespacegridfire_1_1trigger_1_1solver.html"/>
+<a href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html"/>
+<a href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html#a26555ea09be620dabc5f9644be8f9908"/>
 <a href="namespacegridfire_1_1utils.html"/>
-<a href="namespacegridfire_1_1utils.html#af56693a70d9e2b40c8ae2c3bcd4b26c8"/>
+<a href="namespacegridfire_1_1utils.html#a05fda32d3fc4ab10060b8c4c251c2f3d"/>
+<a href="namespacegridfire_1_1utils.html#a6451ba6762273b91a8281043cfaa5d2a"/>
 <a href="namespacemembers.html"/>
 <a href="namespacemembers_enum.html"/>
 <a href="namespacemembers_eval.html"/>
@@ -991,18 +1359,18 @@
 <a href="pages.html"/>
 <a href="partition_2bindings_8cpp.html"/>
 <a href="partition_2bindings_8cpp.html#a2806baaec82e0e6d66b80348584e08fd"/>
+<a href="partition_2bindings_8cpp.html#a294e2893e79c41c10f914467d4858c1a"/>
 <a href="partition_2bindings_8cpp.html#a4c0db94b56a3b02482ac4fd654680cca"/>
-<a href="partition_2bindings_8cpp.html#a4e56b30b36165067cf413787a55b9ecb"/>
-<a href="partition_2bindings_8cpp.html#ac36d0a5e8cb0122888fd218a143c7630"/>
-<a href="partition_2bindings_8cpp.html#ae405682b0e35624397583048f4d40f75"/>
-<a href="partition_2bindings_8cpp.html#afded1a99d32cbf8745a42e0a81891e18"/>
+<a href="partition_2bindings_8cpp.html#a9d0d58ff2233e31a4ad88cc418b5ca64"/>
+<a href="partition_2bindings_8cpp.html#ac0a1def5c77c5554187c9d4f26fce77e"/>
+<a href="partition_2bindings_8cpp.html#ae1665331725ff38c39d7d3eec551ec97"/>
 <a href="partition_2bindings_8h.html"/>
 <a href="partition_2bindings_8h.html#a2806baaec82e0e6d66b80348584e08fd"/>
+<a href="partition_2bindings_8h.html#a294e2893e79c41c10f914467d4858c1a"/>
 <a href="partition_2bindings_8h.html#a4c0db94b56a3b02482ac4fd654680cca"/>
-<a href="partition_2bindings_8h.html#a4e56b30b36165067cf413787a55b9ecb"/>
-<a href="partition_2bindings_8h.html#ac36d0a5e8cb0122888fd218a143c7630"/>
-<a href="partition_2bindings_8h.html#ae405682b0e35624397583048f4d40f75"/>
-<a href="partition_2bindings_8h.html#afded1a99d32cbf8745a42e0a81891e18"/>
+<a href="partition_2bindings_8h.html#a9d0d58ff2233e31a4ad88cc418b5ca64"/>
+<a href="partition_2bindings_8h.html#ac0a1def5c77c5554187c9d4f26fce77e"/>
+<a href="partition_2bindings_8h.html#ae1665331725ff38c39d7d3eec551ec97"/>
 <a href="partition_8h.html"/>
 <a href="partition__abstract_8h.html"/>
 <a href="partition__composite_8cpp.html"/>
@@ -1050,6 +1418,7 @@
 <a href="screening__abstract_8h.html"/>
 <a href="screening__bare_8cpp.html"/>
 <a href="screening__bare_8h.html"/>
+<a href="screening__intermediate_8h.html"/>
 <a href="screening__types_8cpp.html"/>
 <a href="screening__types_8h.html"/>
 <a href="screening__weak_8cpp.html"/>
@@ -1058,12 +1427,17 @@
 <a href="solver_2bindings_8cpp.html#a722d28831d82cd075081fcf4b403479d"/>
 <a href="solver_2bindings_8h.html"/>
 <a href="solver_2bindings_8h.html#a7ff40d9e08fcb5028e914045447d46d3"/>
-<a href="solver_8cpp.html"/>
 <a href="solver_8h.html"/>
+<a href="solver__interfaces_8h.html"/>
 <a href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow-members.html"/>
 <a href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html"/>
-<a href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a3bb21f20df8115d37108cf3c3be3bc6f"/>
 <a href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a6c2e9087f6c8af5d89a5f0de7bd4a5b4"/>
+<a href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#afc894db76a799be17be91130ff3ae6d9"/>
+<a href="structgridfire_1_1_energy_derivatives-members.html"/>
+<a href="structgridfire_1_1_energy_derivatives.html"/>
+<a href="structgridfire_1_1_energy_derivatives.html#a70ae455c021a950fda7bda3022456542"/>
+<a href="structgridfire_1_1_energy_derivatives.html#aa974abdff7fe09c9aea3fcf4ae13b652"/>
+<a href="structgridfire_1_1_energy_derivatives.html#adc09db042b1fdee7468c807491245046"/>
 <a href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction-members.html"/>
 <a href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html"/>
 <a href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275"/>
@@ -1102,33 +1476,34 @@
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor-members.html"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html"/>
-<a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a0adf1074b5e6ba448cedff7563c450d0"/>
-<a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a1aa29df77925443796e1e59c1b7b7a60"/>
-<a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3bc901d2d8234d1f61e94d0fe0777f7d"/>
+<a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a23e6ba8dfe37b7f167837296a6654684"/>
+<a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a24463a5e83e096ef368878ad29fdafb6"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3ebf684b36e98da38d8ee6f0be4f91e2"/>
+<a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4804c6481c2706b04f48c1bbfd9fd5f8"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c"/>
-<a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4eb11e99dc2a7e038d815bf7c6bd0be8"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a29d2722f9dbe03584086bc1ab8e102c0"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a753b594931f9ee122e2079986ad572c9"/>
-<a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6d13bb5294f5dae7e2eb1d26720f944e"/>
+<a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6f5611ca669567534df1bd793e90d2e3"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc"/>
+<a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ac5bf1e4b4ac8435af5739ce970b373d7"/>
+<a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad19c39ced17e400af9f46478546a8fa1"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7353c20a6eac2ac0d9d13791577080d"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group-members.html"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html"/>
+<a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a165b68f0ebb30cda5ffaafa7c0f27617"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06"/>
-<a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88"/>
-<a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681"/>
-<a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ab11be6e7afeef1ac9e4314ad8345e0b0"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a"/>
+<a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af2d7e09d940e0fb3ca24a4bc8ec01031"/>
 <a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06"/>
+<a href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#aff54b71dd17051bc991f747a328c7d8e"/>
 <a href="structgridfire_1_1_net_in-members.html"/>
 <a href="structgridfire_1_1_net_in.html"/>
 <a href="structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577"/>
@@ -1142,9 +1517,11 @@
 <a href="structgridfire_1_1_net_out-members.html"/>
 <a href="structgridfire_1_1_net_out.html"/>
 <a href="structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a"/>
+<a href="structgridfire_1_1_net_out.html#a210c0c395bc012c8ce6bef8cc6b683d6"/>
 <a href="structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6"/>
 <a href="structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6"/>
 <a href="structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b"/>
+<a href="structgridfire_1_1_net_out.html#ad0bde670fb87bcab4de413e8284d624e"/>
 <a href="structgridfire_1_1_priming_report-members.html"/>
 <a href="structgridfire_1_1_priming_report.html"/>
 <a href="structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb"/>
@@ -1170,8 +1547,9 @@
 <a href="structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a"/>
 <a href="structgridfire_1_1_step_derivatives-members.html"/>
 <a href="structgridfire_1_1_step_derivatives.html"/>
+<a href="structgridfire_1_1_step_derivatives.html#a1ae99ac1684d8df519f8d6af413d2cb1"/>
+<a href="structgridfire_1_1_step_derivatives.html#a26deeb236e77eddb0119ad368a5d8f1c"/>
 <a href="structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008"/>
-<a href="structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d"/>
 <a href="structgridfire_1_1approx8_1_1_approx8_net-members.html"/>
 <a href="structgridfire_1_1approx8_1_1_approx8_net.html"/>
 <a href="structgridfire_1_1approx8_1_1_approx8_net.html#a010df59d40b3bc8a802224968922ebde"/>
@@ -1207,9 +1585,9 @@
 <a href="structgridfire_1_1expectations_1_1_engine_error.html"/>
 <a href="structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897"/>
 <a href="structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7"/>
+<a href="structgridfire_1_1expectations_1_1_engine_error.html#a574a18b105ee285f516db535e1e3bdfd"/>
 <a href="structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897"/>
 <a href="structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc"/>
-<a href="structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa"/>
 <a href="structgridfire_1_1expectations_1_1_engine_index_error-members.html"/>
 <a href="structgridfire_1_1expectations_1_1_engine_index_error.html"/>
 <a href="structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e"/>
@@ -1242,6 +1620,76 @@
 <a href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a677505655a1c6922dfa9b32b70d7e815"/>
 <a href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#abb1416e2d8d4d27264c9eece547006b6"/>
 <a href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#acf5c38826050594aee98d746d0ba40b2"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info-members.html"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a07dfb669f73b029a71eb59cbbed69f42"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a3eb0be2063f7333994a026a569ae5568"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a6371b8f8c45a9b069b19dd968ff81b28"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#afb2af3df6ec5ea439b5ea55571975391"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error-members.html"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a086720ca534bc4c63d9341995e2f87bd"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a1541a5280bd1b3f90bc62d7c0e1f80a1"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid-members.html"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a30362f5bb497ae74cf6a10fd701273a0"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a82cc218ce48dcb835d07422dad927a5a"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a99da523669d85aa0a628d35a077d541c"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#ad0df5ef84e3a78d881838a3bb014db83"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row-members.html"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a075a70baa4ac5859fb01d493e08debdd"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a2344c046a615bc6ff07327d6bcfe074b"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a318b62e183dcb49c04260832454fa721"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a359555f2b05e4b30bf810e12456df43b"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a9d4db2970fc7f525824f6666198b3d56"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ab41dace2493e036460736d8124a3475c"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#abd2d7fc00f582316eae824ccafef9b4b"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ac08d42071950006ccf3c438253ef9ee9"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ad7908a8b8a1db5014f23a7b3855156b0"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#aee9ee73218397780a2a7708c29779c73"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#afc3f5d3e5c3ec52134619fd462922f85"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives-members.html"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a3cf82898078fcc9aa69344b4d2cf8783"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a415f5ff7ee18cc241eab5fbf6a0cdc17"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a54ba76b67d037954af1cbd6052becc61"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a5e15e3d4d03288bd6f5dfc7054120514"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a87894b5fdb0323c41f8e1e179ffefd1e"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#ab79353551bc5f832c986d24384d8a53a"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload-members.html"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a6bbeb82cc27fd59ceafa320c1515106a"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9134b85837be88ece72c20df9edce50d"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9d71d093fbb35cd8a451ea12cde28771"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aa2e81d295afba465427e46b36e1438e4"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#abe1b2dd11ec550311a58555f3a945cbe"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aeb0494f46a0c6b9e29ed4cc15f07364b"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants-members.html"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a016c3e02f622e21073f9110707177b76"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a0629ea0e5d51166e400696a358b0045e"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a24d6517e15c177fb8ca72f08f8eaf509"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a2d6c6d4eb9b54c050c266298611c1e44"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a57273916131b68d1aed6e16d85667427"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8998f5acb979463eeabb14da50fb6856"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8a780d3937e60794f007ec65fe866a56"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab176a60ea64181d84be3bb6496ad0b0e"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab60f42677de82f3aab77d2af846c2ffd"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab7d46e02bb7264ff3aada6b3997b2ab1"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abdb3124f6ef5ea294f402d30717fa208"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abe06f72b5b646cb3f1462b56d94a1de4"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ae527298ffcdeb0b7b4089eeed4ddb58d"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#af834029caff08f9d5f7ff3a817ade469"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry-members.html"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a17dde21438cabec9ae23a0d318c41a7a"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a4a1cbc93d5e197a69a5a29a8cabc6498"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a549f4c9266722314f61d668d8507145c"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a5a2525ca7e7b2c812b1f67b3b0114aaf"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a90b6e47918fa750c28917ba6136c7880"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#aa603395b65c8639f8d93f73b7d9bd61e"/>
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#ad0bb77849bda4934472675e196af87c8"/>
 <a href="structgridfire_1_1reaclib_1_1_reaction_record-members.html"/>
 <a href="structgridfire_1_1reaclib_1_1_reaction_record.html"/>
 <a href="structgridfire_1_1reaclib_1_1_reaction_record.html#a2165deb1c0a54a5086b496cf34604fa5"/>
@@ -1262,70 +1710,67 @@
 <a href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ace9dbd928e179784e47eaa108ce8d721"/>
 <a href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html#adf8e6ed7f91cb9e15d1469a808b1877a"/>
 <a href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ae57b2eac71cb4ed9947f40c9cb8fc3ca"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor-members.html"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager-members.html"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a035962dfdfc13d255def98befefcccd9"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a0eed45bfe5296e4ca9f87b5b53841931"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a17b83f2478395c934c4ec2c964e9d35e"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a226b007bfc9960b5c0bb7b88b4f122da"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a49268e65b89444c3caf1e69323ce545b"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a4ba187f1a0deca0a82ac3c9a14883855"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a69d773a1cfe4804876dbf23de1f212c9"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a6cc605a83b5ac5ae048d1044be284ada"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a70d801db98fe8e2e4e6010f37da29905"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aec8c0a0b2fbb71cebb40c263f64385b3"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context-members.html"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a349187ed1b13c91ef6f9d930db58d97b"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a3e4d242a2f5f6726b980119ed80a9901"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a53985d354dcaeda96dc39828c6c9d9d1"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a6a293628e61f241b9d335cd223da5f7c"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a838fdd3dd8beac8ca7e735921230ea2d"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a85eab3fb76bcef5044b2be6cc60a46df"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ab032139a719e551f888ae012ef8018ee"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ad49305586fdc676f96161e91c6b863dd"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ad565c013b373f312f0f5157f11d02cef"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adab4b53a94b935f89f799bd5a67847a2"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adc814e5288f42c8eaf21c628858881a0"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#aea1385260976dff133404db5b453ba98"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#afaebf35ef65567a7c824d5c14d479bb3"/>
-<a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#afee439e7b59805a6b4dcffffa2b0e6e3"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data-members.html"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a0b27605ac3211a1805d7910c899bbcce"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a1fb4ca773aaad8d1d958a3a0e82d8edd"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a3e089139de2ba47e96dfe22c14d24e9e"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a41a5bc46358cb59373f62c791e1bc29c"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ac44d6bd0f4952d8bfdf487a09264872b"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ad7f3eb9caae25ef25357c41c23d6b392"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#afdc510f8160693806737c4ab517058b8"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context-members.html"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a0b39f0d207181840efacb64417b492ae"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a25743a21ed801ed4288309f35dc9a289"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a406b36ce5f192c855eb3c8dcf0fde0bd"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a25afbc9f8a907304992e144dfa3529"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a92187c15b7bcb90adebecc87e1436a"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a51e86d2721053055d8479662b864e367"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a6442d15673e6385bb6fdd11e1179c487"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a75d7e32c9df3d8a047069fe2d64cd089"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#aaae3c42b9172be4d501f022e67f5a6f6"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#ae3c6320ce7a8f41c9ae36c42d62b4204"/>
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#af8c233f893bf740e81c5254d84534067"/>
 <a href="structgridfire_1_1solver_1_1_solver_context_base-members.html"/>
 <a href="structgridfire_1_1solver_1_1_solver_context_base.html"/>
 <a href="structgridfire_1_1solver_1_1_solver_context_base.html#a9cbef3cabc8524e542613ee50d8860c6"/>
 <a href="structgridfire_1_1solver_1_1_solver_context_base.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8"/>
+<a href="structgridfire_1_1trigger_1_1_trigger_result-members.html"/>
+<a href="structgridfire_1_1trigger_1_1_trigger_result.html"/>
+<a href="structgridfire_1_1trigger_1_1_trigger_result.html#a1f27dd6d5cca43956812ec78cfb7be2d"/>
+<a href="structgridfire_1_1trigger_1_1_trigger_result.html#a372af12d705b623075c41872f3ec96e1"/>
+<a href="structgridfire_1_1trigger_1_1_trigger_result.html#a7cf4d21d3cd3e53b62736932b44072cd"/>
+<a href="structgridfire_1_1trigger_1_1_trigger_result.html#aaf99ffdeb73f5e792e61c4cca68aa157"/>
 <a href="structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4-members.html"/>
 <a href="structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html"/>
 <a href="structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3"/>
-<a href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4-members.html"/>
-<a href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html"/>
-<a href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html#a4b76e7119050266952ded94d6f0544cb"/>
 <a href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4-members.html"/>
 <a href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html"/>
 <a href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9"/>
 <a href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4-members.html"/>
 <a href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html"/>
 <a href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921"/>
+<a href="table__format_8h.html"/>
+<a href="trigger__abstract_8h.html"/>
+<a href="trigger__logical_8h.html"/>
+<a href="trigger__pprint_8h.html"/>
+<a href="trigger__result_8h.html"/>
 <a href="types_2bindings_8cpp.html"/>
-<a href="types_2bindings_8cpp.html#a37d2e0b6a2605d063eec5e2a64e9bcc5"/>
+<a href="types_2bindings_8cpp.html#aa0589677938fad59ffce3f6981f53ff0"/>
 <a href="types_2bindings_8h.html"/>
-<a href="types_2bindings_8h.html#a37d2e0b6a2605d063eec5e2a64e9bcc5"/>
+<a href="types_2bindings_8h.html#aa0589677938fad59ffce3f6981f53ff0"/>
 <a href="usage_8md.html"/>
 <a href="utils_2bindings_8cpp.html"/>
 <a href="utils_2bindings_8cpp.html#a7af842f50ca4a721518e716d0229697c"/>
 <a href="utils_2bindings_8h.html"/>
 <a href="utils_2bindings_8h.html#a9eefca377142320755a869fafc6311c7"/>
+<a href="weak_8cpp.html"/>
+<a href="weak_8h.html"/>
+<a href="weak_8h.html#a56d76d6c9aef1e09f707c836a157ff27"/>
+<a href="weak__interpolator_8cpp.html"/>
+<a href="weak__interpolator_8h.html"/>
+<a href="weak__rate__library_8h.html"/>
+<a href="weak__types_8h.html"/>
 </body>
 </html>
diff --git a/docs/html/dynamic__engine__diagnostics_8cpp.html b/docs/html/dynamic__engine__diagnostics_8cpp.html
new file mode 100644
index 00000000..c82a3dbe
--- /dev/null
+++ b/docs/html/dynamic__engine__diagnostics_8cpp.html
@@ -0,0 +1,142 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/lib/engine/diagnostics/dynamic_engine_diagnostics.cpp File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('dynamic__engine__diagnostics_8cpp.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#namespaces">Namespaces</a> &#124;
+<a href="#func-members">Functions</a>  </div>
+  <div class="headertitle"><div class="title">dynamic_engine_diagnostics.cpp File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><code>#include &quot;<a class="el" href="dynamic__engine__diagnostics_8h.html">gridfire/engine/diagnostics/dynamic_engine_diagnostics.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="engine__abstract_8h.html">gridfire/engine/engine_abstract.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="table__format_8h.html">gridfire/utils/table_format.h</a>&quot;</code><br />
+<code>#include &lt;vector&gt;</code><br />
+<code>#include &lt;string&gt;</code><br />
+<code>#include &lt;iostream&gt;</code><br />
+<code>#include &lt;algorithm&gt;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1diagnostics.html">gridfire::diagnostics</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:a9d95a6c9c4a942d71ff4c8046fe4107a" id="r_a9d95a6c9c4a942d71ff4c8046fe4107a"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1diagnostics.html#a9d95a6c9c4a942d71ff4c8046fe4107a">gridfire::diagnostics::report_limiting_species</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const std::vector&lt; double &gt; &amp;Y_full, const std::vector&lt; double &gt; &amp;E_full, const std::vector&lt; double &gt; &amp;dydt_full, double relTol, double absTol, size_t top_n=10)</td></tr>
+<tr class="separator:a9d95a6c9c4a942d71ff4c8046fe4107a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a11c0d538e7244bee168d7f9217442128" id="r_a11c0d538e7244bee168d7f9217442128"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1diagnostics.html#a11c0d538e7244bee168d7f9217442128">gridfire::diagnostics::inspect_species_balance</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const std::string &amp;species_name, const fourdst::composition::Composition &amp;comp, double T9, double rho)</td></tr>
+<tr class="separator:a11c0d538e7244bee168d7f9217442128"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a066ee899bd259062716f25abae3890b0" id="r_a066ee899bd259062716f25abae3890b0"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1diagnostics.html#a066ee899bd259062716f25abae3890b0">gridfire::diagnostics::inspect_jacobian_stiffness</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const fourdst::composition::Composition &amp;comp, double T9, double rho)</td></tr>
+<tr class="separator:a066ee899bd259062716f25abae3890b0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_c85d3e3c5052e9ad9ce18c6863244a25.html">lib</a></li><li class="navelem"><a class="el" href="dir_3cc0b3e3c66436f74054a789a4a47fbc.html">engine</a></li><li class="navelem"><a class="el" href="dir_c99e86cd0291aa23d2204e664fe571c1.html">diagnostics</a></li><li class="navelem"><a class="el" href="dynamic__engine__diagnostics_8cpp.html">dynamic_engine_diagnostics.cpp</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/dynamic__engine__diagnostics_8cpp.js b/docs/html/dynamic__engine__diagnostics_8cpp.js
new file mode 100644
index 00000000..a8c458eb
--- /dev/null
+++ b/docs/html/dynamic__engine__diagnostics_8cpp.js
@@ -0,0 +1,6 @@
+var dynamic__engine__diagnostics_8cpp =
+[
+    [ "gridfire::diagnostics::inspect_jacobian_stiffness", "namespacegridfire_1_1diagnostics.html#a066ee899bd259062716f25abae3890b0", null ],
+    [ "gridfire::diagnostics::inspect_species_balance", "namespacegridfire_1_1diagnostics.html#a11c0d538e7244bee168d7f9217442128", null ],
+    [ "gridfire::diagnostics::report_limiting_species", "namespacegridfire_1_1diagnostics.html#a9d95a6c9c4a942d71ff4c8046fe4107a", null ]
+];
\ No newline at end of file
diff --git a/docs/html/dynamic__engine__diagnostics_8h.html b/docs/html/dynamic__engine__diagnostics_8h.html
new file mode 100644
index 00000000..2c4b07bf
--- /dev/null
+++ b/docs/html/dynamic__engine__diagnostics_8h.html
@@ -0,0 +1,138 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/engine/diagnostics/dynamic_engine_diagnostics.h File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('dynamic__engine__diagnostics_8h.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#namespaces">Namespaces</a> &#124;
+<a href="#func-members">Functions</a>  </div>
+  <div class="headertitle"><div class="title">dynamic_engine_diagnostics.h File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><code>#include &quot;<a class="el" href="engine__abstract_8h.html">gridfire/engine/engine_abstract.h</a>&quot;</code><br />
+<code>#include &lt;vector&gt;</code><br />
+<code>#include &lt;string&gt;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1diagnostics.html">gridfire::diagnostics</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:a9d95a6c9c4a942d71ff4c8046fe4107a" id="r_a9d95a6c9c4a942d71ff4c8046fe4107a"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1diagnostics.html#a9d95a6c9c4a942d71ff4c8046fe4107a">gridfire::diagnostics::report_limiting_species</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const std::vector&lt; double &gt; &amp;Y_full, const std::vector&lt; double &gt; &amp;E_full, const std::vector&lt; double &gt; &amp;dydt_full, double relTol, double absTol, size_t top_n=10)</td></tr>
+<tr class="separator:a9d95a6c9c4a942d71ff4c8046fe4107a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a11c0d538e7244bee168d7f9217442128" id="r_a11c0d538e7244bee168d7f9217442128"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1diagnostics.html#a11c0d538e7244bee168d7f9217442128">gridfire::diagnostics::inspect_species_balance</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const std::string &amp;species_name, const fourdst::composition::Composition &amp;comp, double T9, double rho)</td></tr>
+<tr class="separator:a11c0d538e7244bee168d7f9217442128"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a066ee899bd259062716f25abae3890b0" id="r_a066ee899bd259062716f25abae3890b0"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1diagnostics.html#a066ee899bd259062716f25abae3890b0">gridfire::diagnostics::inspect_jacobian_stiffness</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const fourdst::composition::Composition &amp;comp, double T9, double rho)</td></tr>
+<tr class="separator:a066ee899bd259062716f25abae3890b0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_aff155d61c3b73b9ab7dcdc908c4d49e.html">engine</a></li><li class="navelem"><a class="el" href="dir_b893969db6254951682857c720518fa8.html">diagnostics</a></li><li class="navelem"><a class="el" href="dynamic__engine__diagnostics_8h.html">dynamic_engine_diagnostics.h</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/dynamic__engine__diagnostics_8h.js b/docs/html/dynamic__engine__diagnostics_8h.js
new file mode 100644
index 00000000..e1ab1257
--- /dev/null
+++ b/docs/html/dynamic__engine__diagnostics_8h.js
@@ -0,0 +1,6 @@
+var dynamic__engine__diagnostics_8h =
+[
+    [ "gridfire::diagnostics::inspect_jacobian_stiffness", "namespacegridfire_1_1diagnostics.html#a066ee899bd259062716f25abae3890b0", null ],
+    [ "gridfire::diagnostics::inspect_species_balance", "namespacegridfire_1_1diagnostics.html#a11c0d538e7244bee168d7f9217442128", null ],
+    [ "gridfire::diagnostics::report_limiting_species", "namespacegridfire_1_1diagnostics.html#a9d95a6c9c4a942d71ff4c8046fe4107a", null ]
+];
\ No newline at end of file
diff --git a/docs/html/engine_2bindings_8cpp.html b/docs/html/engine_2bindings_8cpp.html
index efe62d4b..f4bbda86 100644
--- a/docs/html/engine_2bindings_8cpp.html
+++ b/docs/html/engine_2bindings_8cpp.html
@@ -108,7 +108,6 @@ $(function(){initNavTree('engine_2bindings_8cpp.html',''); initResizable(true);
 <div class="textblock"><code>#include &lt;pybind11/pybind11.h&gt;</code><br />
 <code>#include &lt;pybind11/stl.h&gt;</code><br />
 <code>#include &lt;pybind11/stl_bind.h&gt;</code><br />
-<code>#include &lt;iostream&gt;</code><br />
 <code>#include &quot;<a class="el" href="engine_2bindings_8h.html">bindings.h</a>&quot;</code><br />
 <code>#include &quot;<a class="el" href="engine_8h.html">gridfire/engine/engine.h</a>&quot;</code><br />
 <code>#include &quot;<a class="el" href="py__engine_8h.html">trampoline/py_engine.h</a>&quot;</code><br />
@@ -122,20 +121,20 @@ Concepts</h2></td></tr>
 Functions</h2></td></tr>
 <tr class="memitem:ac2df9cd0e71d39b97ddd47b3e7024b0c" id="r_ac2df9cd0e71d39b97ddd47b3e7024b0c"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac2df9cd0e71d39b97ddd47b3e7024b0c">register_engine_bindings</a> (py::module &amp;m)</td></tr>
 <tr class="separator:ac2df9cd0e71d39b97ddd47b3e7024b0c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a884aac3c3f2e8c62843c69329052d642" id="r_a884aac3c3f2e8c62843c69329052d642"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a884aac3c3f2e8c62843c69329052d642">register_base_engine_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:a884aac3c3f2e8c62843c69329052d642"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a01ff627d4ef6a21b3323cd383dd29841" id="r_a01ff627d4ef6a21b3323cd383dd29841"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a01ff627d4ef6a21b3323cd383dd29841">abs_stype_register_engine_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:a01ff627d4ef6a21b3323cd383dd29841"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4066aaf2dca39ee1ed37ad53169f1cdf" id="r_a4066aaf2dca39ee1ed37ad53169f1cdf"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4066aaf2dca39ee1ed37ad53169f1cdf">abs_stype_register_dynamic_engine_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:a4066aaf2dca39ee1ed37ad53169f1cdf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a61b016667b7477d898be2a2a5bc7cab8" id="r_a61b016667b7477d898be2a2a5bc7cab8"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a61b016667b7477d898be2a2a5bc7cab8">con_stype_register_graph_engine_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:a61b016667b7477d898be2a2a5bc7cab8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a74a027923ac27f235cf565f8d2a355bd" id="r_a74a027923ac27f235cf565f8d2a355bd"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a74a027923ac27f235cf565f8d2a355bd">register_engine_view_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:a74a027923ac27f235cf565f8d2a355bd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a766b8bf2c08f2e81486752261ec89642" id="r_a766b8bf2c08f2e81486752261ec89642"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a766b8bf2c08f2e81486752261ec89642">register_base_engine_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:a766b8bf2c08f2e81486752261ec89642"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aef9864cec8e0891ee46c8a0d76de2c93" id="r_aef9864cec8e0891ee46c8a0d76de2c93"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aef9864cec8e0891ee46c8a0d76de2c93">abs_stype_register_engine_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:aef9864cec8e0891ee46c8a0d76de2c93"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7ba5eb780fc02dab2b7be388ffa084f8" id="r_a7ba5eb780fc02dab2b7be388ffa084f8"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7ba5eb780fc02dab2b7be388ffa084f8">abs_stype_register_dynamic_engine_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:a7ba5eb780fc02dab2b7be388ffa084f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a73d427751e6a64952d52e7c2cc84d065" id="r_a73d427751e6a64952d52e7c2cc84d065"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a73d427751e6a64952d52e7c2cc84d065">con_stype_register_graph_engine_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:a73d427751e6a64952d52e7c2cc84d065"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac12de48f4164b679dd7afb03c83ec4bf" id="r_ac12de48f4164b679dd7afb03c83ec4bf"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac12de48f4164b679dd7afb03c83ec4bf">register_engine_view_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:ac12de48f4164b679dd7afb03c83ec4bf"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Function Documentation</h2>
-<a id="a4066aaf2dca39ee1ed37ad53169f1cdf" name="a4066aaf2dca39ee1ed37ad53169f1cdf"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4066aaf2dca39ee1ed37ad53169f1cdf">&#9670;&#160;</a></span>abs_stype_register_dynamic_engine_bindings()</h2>
+<a id="a7ba5eb780fc02dab2b7be388ffa084f8" name="a7ba5eb780fc02dab2b7be388ffa084f8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7ba5eb780fc02dab2b7be388ffa084f8">&#9670;&#160;</a></span>abs_stype_register_dynamic_engine_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -143,7 +142,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void abs_stype_register_dynamic_engine_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -151,8 +150,8 @@ Functions</h2></td></tr>
 
 </div>
 </div>
-<a id="a01ff627d4ef6a21b3323cd383dd29841" name="a01ff627d4ef6a21b3323cd383dd29841"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a01ff627d4ef6a21b3323cd383dd29841">&#9670;&#160;</a></span>abs_stype_register_engine_bindings()</h2>
+<a id="aef9864cec8e0891ee46c8a0d76de2c93" name="aef9864cec8e0891ee46c8a0d76de2c93"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aef9864cec8e0891ee46c8a0d76de2c93">&#9670;&#160;</a></span>abs_stype_register_engine_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -160,7 +159,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void abs_stype_register_engine_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -168,8 +167,8 @@ Functions</h2></td></tr>
 
 </div>
 </div>
-<a id="a61b016667b7477d898be2a2a5bc7cab8" name="a61b016667b7477d898be2a2a5bc7cab8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a61b016667b7477d898be2a2a5bc7cab8">&#9670;&#160;</a></span>con_stype_register_graph_engine_bindings()</h2>
+<a id="a73d427751e6a64952d52e7c2cc84d065" name="a73d427751e6a64952d52e7c2cc84d065"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a73d427751e6a64952d52e7c2cc84d065">&#9670;&#160;</a></span>con_stype_register_graph_engine_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -177,7 +176,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void con_stype_register_graph_engine_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -185,8 +184,8 @@ Functions</h2></td></tr>
 
 </div>
 </div>
-<a id="a884aac3c3f2e8c62843c69329052d642" name="a884aac3c3f2e8c62843c69329052d642"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a884aac3c3f2e8c62843c69329052d642">&#9670;&#160;</a></span>register_base_engine_bindings()</h2>
+<a id="a766b8bf2c08f2e81486752261ec89642" name="a766b8bf2c08f2e81486752261ec89642"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a766b8bf2c08f2e81486752261ec89642">&#9670;&#160;</a></span>register_base_engine_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -194,7 +193,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_base_engine_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -219,8 +218,8 @@ Functions</h2></td></tr>
 
 </div>
 </div>
-<a id="a74a027923ac27f235cf565f8d2a355bd" name="a74a027923ac27f235cf565f8d2a355bd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a74a027923ac27f235cf565f8d2a355bd">&#9670;&#160;</a></span>register_engine_view_bindings()</h2>
+<a id="ac12de48f4164b679dd7afb03c83ec4bf" name="ac12de48f4164b679dd7afb03c83ec4bf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac12de48f4164b679dd7afb03c83ec4bf">&#9670;&#160;</a></span>register_engine_view_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -228,7 +227,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_engine_view_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
diff --git a/docs/html/engine_2bindings_8cpp.js b/docs/html/engine_2bindings_8cpp.js
index 5d54819f..a481736b 100644
--- a/docs/html/engine_2bindings_8cpp.js
+++ b/docs/html/engine_2bindings_8cpp.js
@@ -1,10 +1,10 @@
 var engine_2bindings_8cpp =
 [
     [ "@012022023301355052304263320136165002200160012126::IsDynamicEngine", "concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html", null ],
-    [ "abs_stype_register_dynamic_engine_bindings", "engine_2bindings_8cpp.html#a4066aaf2dca39ee1ed37ad53169f1cdf", null ],
-    [ "abs_stype_register_engine_bindings", "engine_2bindings_8cpp.html#a01ff627d4ef6a21b3323cd383dd29841", null ],
-    [ "con_stype_register_graph_engine_bindings", "engine_2bindings_8cpp.html#a61b016667b7477d898be2a2a5bc7cab8", null ],
-    [ "register_base_engine_bindings", "engine_2bindings_8cpp.html#a884aac3c3f2e8c62843c69329052d642", null ],
+    [ "abs_stype_register_dynamic_engine_bindings", "engine_2bindings_8cpp.html#a7ba5eb780fc02dab2b7be388ffa084f8", null ],
+    [ "abs_stype_register_engine_bindings", "engine_2bindings_8cpp.html#aef9864cec8e0891ee46c8a0d76de2c93", null ],
+    [ "con_stype_register_graph_engine_bindings", "engine_2bindings_8cpp.html#a73d427751e6a64952d52e7c2cc84d065", null ],
+    [ "register_base_engine_bindings", "engine_2bindings_8cpp.html#a766b8bf2c08f2e81486752261ec89642", null ],
     [ "register_engine_bindings", "engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c", null ],
-    [ "register_engine_view_bindings", "engine_2bindings_8cpp.html#a74a027923ac27f235cf565f8d2a355bd", null ]
+    [ "register_engine_view_bindings", "engine_2bindings_8cpp.html#ac12de48f4164b679dd7afb03c83ec4bf", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/engine_2bindings_8h.html b/docs/html/engine_2bindings_8h.html
index 828087b4..b3104797 100644
--- a/docs/html/engine_2bindings_8h.html
+++ b/docs/html/engine_2bindings_8h.html
@@ -110,20 +110,20 @@ $(function(){initNavTree('engine_2bindings_8h.html',''); initResizable(true); })
 Functions</h2></td></tr>
 <tr class="memitem:a73a2ec4150b3954550f16b97102ec993" id="r_a73a2ec4150b3954550f16b97102ec993"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a73a2ec4150b3954550f16b97102ec993">register_engine_bindings</a> (pybind11::module &amp;m)</td></tr>
 <tr class="separator:a73a2ec4150b3954550f16b97102ec993"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a884aac3c3f2e8c62843c69329052d642" id="r_a884aac3c3f2e8c62843c69329052d642"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a884aac3c3f2e8c62843c69329052d642">register_base_engine_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:a884aac3c3f2e8c62843c69329052d642"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a74a027923ac27f235cf565f8d2a355bd" id="r_a74a027923ac27f235cf565f8d2a355bd"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a74a027923ac27f235cf565f8d2a355bd">register_engine_view_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:a74a027923ac27f235cf565f8d2a355bd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a01ff627d4ef6a21b3323cd383dd29841" id="r_a01ff627d4ef6a21b3323cd383dd29841"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a01ff627d4ef6a21b3323cd383dd29841">abs_stype_register_engine_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:a01ff627d4ef6a21b3323cd383dd29841"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4066aaf2dca39ee1ed37ad53169f1cdf" id="r_a4066aaf2dca39ee1ed37ad53169f1cdf"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4066aaf2dca39ee1ed37ad53169f1cdf">abs_stype_register_dynamic_engine_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:a4066aaf2dca39ee1ed37ad53169f1cdf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a61b016667b7477d898be2a2a5bc7cab8" id="r_a61b016667b7477d898be2a2a5bc7cab8"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a61b016667b7477d898be2a2a5bc7cab8">con_stype_register_graph_engine_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:a61b016667b7477d898be2a2a5bc7cab8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a766b8bf2c08f2e81486752261ec89642" id="r_a766b8bf2c08f2e81486752261ec89642"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a766b8bf2c08f2e81486752261ec89642">register_base_engine_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:a766b8bf2c08f2e81486752261ec89642"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac12de48f4164b679dd7afb03c83ec4bf" id="r_ac12de48f4164b679dd7afb03c83ec4bf"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac12de48f4164b679dd7afb03c83ec4bf">register_engine_view_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:ac12de48f4164b679dd7afb03c83ec4bf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aef9864cec8e0891ee46c8a0d76de2c93" id="r_aef9864cec8e0891ee46c8a0d76de2c93"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aef9864cec8e0891ee46c8a0d76de2c93">abs_stype_register_engine_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:aef9864cec8e0891ee46c8a0d76de2c93"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7ba5eb780fc02dab2b7be388ffa084f8" id="r_a7ba5eb780fc02dab2b7be388ffa084f8"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7ba5eb780fc02dab2b7be388ffa084f8">abs_stype_register_dynamic_engine_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:a7ba5eb780fc02dab2b7be388ffa084f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a73d427751e6a64952d52e7c2cc84d065" id="r_a73d427751e6a64952d52e7c2cc84d065"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a73d427751e6a64952d52e7c2cc84d065">con_stype_register_graph_engine_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:a73d427751e6a64952d52e7c2cc84d065"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Function Documentation</h2>
-<a id="a4066aaf2dca39ee1ed37ad53169f1cdf" name="a4066aaf2dca39ee1ed37ad53169f1cdf"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4066aaf2dca39ee1ed37ad53169f1cdf">&#9670;&#160;</a></span>abs_stype_register_dynamic_engine_bindings()</h2>
+<a id="a7ba5eb780fc02dab2b7be388ffa084f8" name="a7ba5eb780fc02dab2b7be388ffa084f8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7ba5eb780fc02dab2b7be388ffa084f8">&#9670;&#160;</a></span>abs_stype_register_dynamic_engine_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -131,7 +131,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void abs_stype_register_dynamic_engine_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -139,8 +139,8 @@ Functions</h2></td></tr>
 
 </div>
 </div>
-<a id="a01ff627d4ef6a21b3323cd383dd29841" name="a01ff627d4ef6a21b3323cd383dd29841"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a01ff627d4ef6a21b3323cd383dd29841">&#9670;&#160;</a></span>abs_stype_register_engine_bindings()</h2>
+<a id="aef9864cec8e0891ee46c8a0d76de2c93" name="aef9864cec8e0891ee46c8a0d76de2c93"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aef9864cec8e0891ee46c8a0d76de2c93">&#9670;&#160;</a></span>abs_stype_register_engine_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -148,7 +148,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void abs_stype_register_engine_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -156,8 +156,8 @@ Functions</h2></td></tr>
 
 </div>
 </div>
-<a id="a61b016667b7477d898be2a2a5bc7cab8" name="a61b016667b7477d898be2a2a5bc7cab8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a61b016667b7477d898be2a2a5bc7cab8">&#9670;&#160;</a></span>con_stype_register_graph_engine_bindings()</h2>
+<a id="a73d427751e6a64952d52e7c2cc84d065" name="a73d427751e6a64952d52e7c2cc84d065"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a73d427751e6a64952d52e7c2cc84d065">&#9670;&#160;</a></span>con_stype_register_graph_engine_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -165,7 +165,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void con_stype_register_graph_engine_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -173,8 +173,8 @@ Functions</h2></td></tr>
 
 </div>
 </div>
-<a id="a884aac3c3f2e8c62843c69329052d642" name="a884aac3c3f2e8c62843c69329052d642"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a884aac3c3f2e8c62843c69329052d642">&#9670;&#160;</a></span>register_base_engine_bindings()</h2>
+<a id="a766b8bf2c08f2e81486752261ec89642" name="a766b8bf2c08f2e81486752261ec89642"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a766b8bf2c08f2e81486752261ec89642">&#9670;&#160;</a></span>register_base_engine_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -182,7 +182,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_base_engine_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -207,8 +207,8 @@ Functions</h2></td></tr>
 
 </div>
 </div>
-<a id="a74a027923ac27f235cf565f8d2a355bd" name="a74a027923ac27f235cf565f8d2a355bd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a74a027923ac27f235cf565f8d2a355bd">&#9670;&#160;</a></span>register_engine_view_bindings()</h2>
+<a id="ac12de48f4164b679dd7afb03c83ec4bf" name="ac12de48f4164b679dd7afb03c83ec4bf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac12de48f4164b679dd7afb03c83ec4bf">&#9670;&#160;</a></span>register_engine_view_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -216,7 +216,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_engine_view_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
diff --git a/docs/html/engine_2bindings_8h.js b/docs/html/engine_2bindings_8h.js
index b28f384b..918be22e 100644
--- a/docs/html/engine_2bindings_8h.js
+++ b/docs/html/engine_2bindings_8h.js
@@ -1,9 +1,9 @@
 var engine_2bindings_8h =
 [
-    [ "abs_stype_register_dynamic_engine_bindings", "engine_2bindings_8h.html#a4066aaf2dca39ee1ed37ad53169f1cdf", null ],
-    [ "abs_stype_register_engine_bindings", "engine_2bindings_8h.html#a01ff627d4ef6a21b3323cd383dd29841", null ],
-    [ "con_stype_register_graph_engine_bindings", "engine_2bindings_8h.html#a61b016667b7477d898be2a2a5bc7cab8", null ],
-    [ "register_base_engine_bindings", "engine_2bindings_8h.html#a884aac3c3f2e8c62843c69329052d642", null ],
+    [ "abs_stype_register_dynamic_engine_bindings", "engine_2bindings_8h.html#a7ba5eb780fc02dab2b7be388ffa084f8", null ],
+    [ "abs_stype_register_engine_bindings", "engine_2bindings_8h.html#aef9864cec8e0891ee46c8a0d76de2c93", null ],
+    [ "con_stype_register_graph_engine_bindings", "engine_2bindings_8h.html#a73d427751e6a64952d52e7c2cc84d065", null ],
+    [ "register_base_engine_bindings", "engine_2bindings_8h.html#a766b8bf2c08f2e81486752261ec89642", null ],
     [ "register_engine_bindings", "engine_2bindings_8h.html#a73a2ec4150b3954550f16b97102ec993", null ],
-    [ "register_engine_view_bindings", "engine_2bindings_8h.html#a74a027923ac27f235cf565f8d2a355bd", null ]
+    [ "register_engine_view_bindings", "engine_2bindings_8h.html#ac12de48f4164b679dd7afb03c83ec4bf", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/engine_8h.html b/docs/html/engine_8h.html
index 85da1302..5939a33c 100644
--- a/docs/html/engine_8h.html
+++ b/docs/html/engine_8h.html
@@ -154,7 +154,7 @@ GraphEngine Example</h2>
 <div class="line"> </div>
 <div class="line"><span class="comment">// Create a GraphEngine</span></div>
 <div class="line"><a class="code hl_class" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a> engine(composition);</div>
-<div class="ttc" id="aclassgridfire_1_1_graph_engine_html"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></div><div class="ttdoc">A reaction network engine that uses a graph-based representation.</div><div class="ttdef"><b>Definition</b> engine_graph.h:100</div></div>
+<div class="ttc" id="aclassgridfire_1_1_graph_engine_html"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></div><div class="ttdoc">A reaction network engine that uses a graph-based representation.</div><div class="ttdef"><b>Definition</b> engine_graph.h:97</div></div>
 <div class="ttc" id="aengine__graph_8h_html"><div class="ttname"><a href="engine__graph_8h.html">engine_graph.h</a></div></div>
 </div><!-- fragment --><h2><a class="anchor" id="AdaptiveEngineViewExample"></a>
 AdaptiveEngineView Example</h2>
@@ -171,7 +171,7 @@ AdaptiveEngineView Example</h2>
 <div class="line"> </div>
 <div class="line"><span class="comment">// Create an AdaptiveEngineView</span></div>
 <div class="line"><a class="code hl_class" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a> engine(baseEngine);</div>
-<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></div><div class="ttdoc">An engine view that dynamically adapts the reaction network based on runtime conditions.</div><div class="ttdef"><b>Definition</b> engine_adaptive.h:50</div></div>
+<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></div><div class="ttdoc">An engine view that dynamically adapts the reaction network based on runtime conditions.</div><div class="ttdef"><b>Definition</b> engine_adaptive.h:49</div></div>
 <div class="ttc" id="aengine__adaptive_8h_html"><div class="ttname"><a href="engine__adaptive_8h.html">engine_adaptive.h</a></div></div>
 </div><!-- fragment --><h2><a class="anchor" id="DefinedEngineViewExample"></a>
 DefinedEngineView Example</h2>
@@ -206,7 +206,7 @@ MultiscalePartitioningEngineView Example</h2>
 <div class="line"> </div>
 <div class="line"><span class="comment">// Create a MultiscalePartitioningEngineView</span></div>
 <div class="line"><a class="code hl_class" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a> engine(baseEngine);</div>
-<div class="ttc" id="aclassgridfire_1_1_multiscale_partitioning_engine_view_html"><div class="ttname"><a href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></div><div class="ttdoc">An engine view that partitions the reaction network into multiple groups based on timescales.</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:182</div></div>
+<div class="ttc" id="aclassgridfire_1_1_multiscale_partitioning_engine_view_html"><div class="ttname"><a href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></div><div class="ttdoc">An engine view that partitions the reaction network into multiple groups based on timescales.</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:180</div></div>
 <div class="ttc" id="aengine__multiscale_8h_html"><div class="ttname"><a href="engine__multiscale_8h.html">engine_multiscale.h</a></div></div>
 </div><!-- fragment --><h2><a class="anchor" id="NetworkPrimingEngineViewExample"></a>
 NetworkPrimingEngineView Example</h2>
@@ -224,7 +224,7 @@ NetworkPrimingEngineView Example</h2>
 <div class="line"><span class="comment">// Create a NetworkPrimingEngineView</span></div>
 <div class="line">std::string primingSymbol = <span class="stringliteral">&quot;p&quot;</span>;</div>
 <div class="line"><a class="code hl_class" href="classgridfire_1_1_network_priming_engine_view.html">gridfire::NetworkPrimingEngineView</a> engine(primingSymbol, baseEngine);</div>
-<div class="ttc" id="aclassgridfire_1_1_network_priming_engine_view_html"><div class="ttname"><a href="classgridfire_1_1_network_priming_engine_view.html">gridfire::NetworkPrimingEngineView</a></div><div class="ttdoc">Provides a view of a DynamicEngine filtered to reactions involving a specified priming species.</div><div class="ttdef"><b>Definition</b> engine_priming.h:30</div></div>
+<div class="ttc" id="aclassgridfire_1_1_network_priming_engine_view_html"><div class="ttname"><a href="classgridfire_1_1_network_priming_engine_view.html">gridfire::NetworkPrimingEngineView</a></div><div class="ttdoc">Provides a view of a DynamicEngine filtered to reactions involving a specified priming species.</div><div class="ttdef"><b>Definition</b> engine_priming.h:28</div></div>
 <div class="ttc" id="aengine__priming_8h_html"><div class="ttname"><a href="engine__priming_8h.html">engine_priming.h</a></div></div>
 </div><!-- fragment --> </div></div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/engine__abstract_8h.html b/docs/html/engine__abstract_8h.html
index 34b5df32..3b9ef391 100644
--- a/docs/html/engine__abstract_8h.html
+++ b/docs/html/engine__abstract_8h.html
@@ -127,6 +127,8 @@ Classes</h2></td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives&lt; T &gt;</a></td></tr>
 <tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structure holding derivatives and energy generation for a network step.  <a href="structgridfire_1_1_step_derivatives.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1_energy_derivatives.html">gridfire::EnergyDerivatives</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td></tr>
 <tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Abstract base class for a reaction network engine.  <a href="classgridfire_1_1_engine.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
diff --git a/docs/html/engine__abstract_8h.js b/docs/html/engine__abstract_8h.js
index 4b5f9a8d..d74ee0d5 100644
--- a/docs/html/engine__abstract_8h.js
+++ b/docs/html/engine__abstract_8h.js
@@ -1,6 +1,7 @@
 var engine__abstract_8h =
 [
     [ "gridfire::StepDerivatives< T >", "structgridfire_1_1_step_derivatives.html", "structgridfire_1_1_step_derivatives" ],
+    [ "gridfire::EnergyDerivatives", "structgridfire_1_1_energy_derivatives.html", "structgridfire_1_1_energy_derivatives" ],
     [ "gridfire::Engine", "classgridfire_1_1_engine.html", "classgridfire_1_1_engine" ],
     [ "gridfire::DynamicEngine", "classgridfire_1_1_dynamic_engine.html", "classgridfire_1_1_dynamic_engine" ],
     [ "gridfire::IsArithmeticOrAD", "conceptgridfire_1_1_is_arithmetic_or_a_d.html", null ],
diff --git a/docs/html/engine__adaptive_8h.html b/docs/html/engine__adaptive_8h.html
index 524323aa..d8083594 100644
--- a/docs/html/engine__adaptive_8h.html
+++ b/docs/html/engine__adaptive_8h.html
@@ -113,7 +113,6 @@ $(function(){initNavTree('engine__adaptive_8h.html',''); initResizable(true); })
 <code>#include &quot;fourdst/composition/atomicSpecies.h&quot;</code><br />
 <code>#include &quot;fourdst/config/config.h&quot;</code><br />
 <code>#include &quot;fourdst/logging/logging.h&quot;</code><br />
-<code>#include &quot;<a class="el" href="priming_8h.html">gridfire/engine/procedures/priming.h</a>&quot;</code><br />
 <code>#include &quot;<a class="el" href="construction_8h.html">gridfire/engine/procedures/construction.h</a>&quot;</code><br />
 <code>#include &quot;quill/Logger.h&quot;</code><br />
 </div><table class="memberdecls">
diff --git a/docs/html/engine__graph_8cpp.html b/docs/html/engine__graph_8cpp.html
index d39064f5..4d29bcc5 100644
--- a/docs/html/engine__graph_8cpp.html
+++ b/docs/html/engine__graph_8cpp.html
@@ -115,7 +115,6 @@ $(function(){initNavTree('engine__graph_8cpp.html',''); initResizable(true); });
 <code>#include &quot;fourdst/composition/atomicSpecies.h&quot;</code><br />
 <code>#include &quot;quill/LogMacros.h&quot;</code><br />
 <code>#include &lt;cstdint&gt;</code><br />
-<code>#include &lt;iostream&gt;</code><br />
 <code>#include &lt;set&gt;</code><br />
 <code>#include &lt;stdexcept&gt;</code><br />
 <code>#include &lt;string&gt;</code><br />
diff --git a/docs/html/engine__graph_8h.html b/docs/html/engine__graph_8h.html
index e6ca01af..e68fd966 100644
--- a/docs/html/engine__graph_8h.html
+++ b/docs/html/engine__graph_8h.html
@@ -127,8 +127,8 @@ $(function(){initNavTree('engine__graph_8h.html',''); initResizable(true); });
 <code>#include &quot;cppad/cppad.hpp&quot;</code><br />
 <code>#include &quot;cppad/utility/sparse_rc.hpp&quot;</code><br />
 <code>#include &quot;cppad/speed/sparse_jac_fun.hpp&quot;</code><br />
-<code>#include &quot;<a class="el" href="priming_8h.html">procedures/priming.h</a>&quot;</code><br />
-<code>#include &quot;quill/LogMacros.h&quot;</code><br />
+<code>#include &quot;<a class="el" href="weak__interpolator_8h.html">gridfire/reaction/weak/weak_interpolator.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="weak__rate__library_8h.html">gridfire/reaction/weak/weak_rate_library.h</a>&quot;</code><br />
 </div><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
 Classes</h2></td></tr>
diff --git a/docs/html/engine__multiscale_8cpp.html b/docs/html/engine__multiscale_8cpp.html
index 153fccb5..0cb344fc 100644
--- a/docs/html/engine__multiscale_8cpp.html
+++ b/docs/html/engine__multiscale_8cpp.html
@@ -100,19 +100,19 @@ $(function(){initNavTree('engine__multiscale_8cpp.html',''); initResizable(true)
 
 <div class="header">
   <div class="summary">
-<a href="#namespaces">Namespaces</a> &#124;
-<a href="#var-members">Variables</a>  </div>
+<a href="#namespaces">Namespaces</a>  </div>
   <div class="headertitle"><div class="title">engine_multiscale.cpp File Reference</div></div>
 </div><!--header-->
 <div class="contents">
 <div class="textblock"><code>#include &quot;<a class="el" href="engine__multiscale_8h.html">gridfire/engine/views/engine_multiscale.h</a>&quot;</code><br />
 <code>#include &quot;<a class="el" href="error__engine_8h.html">gridfire/exceptions/error_engine.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="priming_8h.html">gridfire/engine/procedures/priming.h</a>&quot;</code><br />
 <code>#include &lt;stdexcept&gt;</code><br />
 <code>#include &lt;vector&gt;</code><br />
+<code>#include &lt;ranges&gt;</code><br />
 <code>#include &lt;unordered_map&gt;</code><br />
 <code>#include &lt;unordered_set&gt;</code><br />
 <code>#include &lt;queue&gt;</code><br />
-<code>#include &lt;ranges&gt;</code><br />
 <code>#include &lt;algorithm&gt;</code><br />
 <code>#include &quot;quill/LogMacros.h&quot;</code><br />
 <code>#include &quot;quill/Logger.h&quot;</code><br />
@@ -121,11 +121,6 @@ $(function(){initNavTree('engine__multiscale_8cpp.html',''); initResizable(true)
 Namespaces</h2></td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="var-members" name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:a8b632637f62614f509cde0e404a79054" id="r_a8b632637f62614f509cde0e404a79054"><td class="memItemLeft" align="right" valign="top">static int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#a8b632637f62614f509cde0e404a79054">gridfire::s_operator_parens_called</a> = 0</td></tr>
-<tr class="separator:a8b632637f62614f509cde0e404a79054"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/engine__multiscale_8h.html b/docs/html/engine__multiscale_8h.html
index b2059cf9..5f86b444 100644
--- a/docs/html/engine__multiscale_8h.html
+++ b/docs/html/engine__multiscale_8h.html
@@ -137,9 +137,6 @@ Classes</h2></td></tr>
 Namespaces</h2></td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacestd.html">std</a></td></tr>
-<tr class="memdesc:namespacestd"><td class="mdescLeft">&#160;</td><td class="mdescRight">STL namespace. <br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/engine__partitioning__trigger_8cpp.html b/docs/html/engine__partitioning__trigger_8cpp.html
new file mode 100644
index 00000000..b2d1b8f0
--- /dev/null
+++ b/docs/html/engine__partitioning__trigger_8cpp.html
@@ -0,0 +1,144 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/lib/solver/strategies/triggers/engine_partitioning_trigger.cpp File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('engine__partitioning__trigger_8cpp.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#namespaces">Namespaces</a> &#124;
+<a href="#func-members">Functions</a>  </div>
+  <div class="headertitle"><div class="title">engine_partitioning_trigger.cpp File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><code>#include &quot;<a class="el" href="engine__partitioning__trigger_8h.html">gridfire/solver/strategies/triggers/engine_partitioning_trigger.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="_c_v_o_d_e__solver__strategy_8h.html">gridfire/solver/strategies/CVODE_solver_strategy.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="trigger__logical_8h.html">gridfire/trigger/trigger_logical.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="trigger__abstract_8h.html">gridfire/trigger/trigger_abstract.h</a>&quot;</code><br />
+<code>#include &quot;quill/LogMacros.h&quot;</code><br />
+<code>#include &lt;memory&gt;</code><br />
+<code>#include &lt;deque&gt;</code><br />
+<code>#include &lt;string&gt;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger_1_1solver.html">gridfire::trigger::solver</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">gridfire::trigger::solver::CVODE</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:a26555ea09be620dabc5f9644be8f9908" id="r_a26555ea09be620dabc5f9644be8f9908"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html#a26555ea09be620dabc5f9644be8f9908">gridfire::trigger::solver::CVODE::makeEnginePartitioningTrigger</a> (const double simulationTimeInterval, const double offDiagonalThreshold, const double timestepGrowthThreshold, const bool timestepGrowthRelative, const size_t timestepGrowthWindowSize)</td></tr>
+<tr class="memdesc:a26555ea09be620dabc5f9644be8f9908"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compose a trigger suitable for deciding engine re-partitioning during <a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">CVODE</a> solves.  <br /></td></tr>
+<tr class="separator:a26555ea09be620dabc5f9644be8f9908"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_c85d3e3c5052e9ad9ce18c6863244a25.html">lib</a></li><li class="navelem"><a class="el" href="dir_4fd0dc9a50f7a53e22cb356c650f915e.html">solver</a></li><li class="navelem"><a class="el" href="dir_b0553efdd4ad7f265c0580564941af0c.html">strategies</a></li><li class="navelem"><a class="el" href="dir_897cfbcdbf2b76d535de4ec754728fa0.html">triggers</a></li><li class="navelem"><a class="el" href="engine__partitioning__trigger_8cpp.html">engine_partitioning_trigger.cpp</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/engine__partitioning__trigger_8cpp.js b/docs/html/engine__partitioning__trigger_8cpp.js
new file mode 100644
index 00000000..a099a218
--- /dev/null
+++ b/docs/html/engine__partitioning__trigger_8cpp.js
@@ -0,0 +1,4 @@
+var engine__partitioning__trigger_8cpp =
+[
+    [ "gridfire::trigger::solver::CVODE::makeEnginePartitioningTrigger", "namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html#a26555ea09be620dabc5f9644be8f9908", null ]
+];
\ No newline at end of file
diff --git a/docs/html/engine__partitioning__trigger_8h.html b/docs/html/engine__partitioning__trigger_8h.html
new file mode 100644
index 00000000..1fb2e2dd
--- /dev/null
+++ b/docs/html/engine__partitioning__trigger_8h.html
@@ -0,0 +1,173 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/solver/strategies/triggers/engine_partitioning_trigger.h File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('engine__partitioning__trigger_8h.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#namespaces">Namespaces</a> &#124;
+<a href="#func-members">Functions</a>  </div>
+  <div class="headertitle"><div class="title">engine_partitioning_trigger.h File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>CVODE-specific triggers that decide when to (re)partition the reaction network engine.  
+<a href="#details">More...</a></p>
+<div class="textblock"><code>#include &quot;<a class="el" href="trigger__abstract_8h.html">gridfire/trigger/trigger_abstract.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="trigger__result_8h.html">gridfire/trigger/trigger_result.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="_c_v_o_d_e__solver__strategy_8h.html">gridfire/solver/strategies/CVODE_solver_strategy.h</a>&quot;</code><br />
+<code>#include &quot;fourdst/logging/logging.h&quot;</code><br />
+<code>#include &lt;string&gt;</code><br />
+<code>#include &lt;deque&gt;</code><br />
+<code>#include &lt;memory&gt;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Triggers when the current simulation time advances by at least a fixed interval.  <a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Triggers when any off-diagonal Jacobian entry magnitude exceeds a threshold.  <a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Triggers when the timestep deviates from its recent average beyond a threshold.  <a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger_1_1solver.html">gridfire::trigger::solver</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">gridfire::trigger::solver::CVODE</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:a26555ea09be620dabc5f9644be8f9908" id="r_a26555ea09be620dabc5f9644be8f9908"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html#a26555ea09be620dabc5f9644be8f9908">gridfire::trigger::solver::CVODE::makeEnginePartitioningTrigger</a> (const double simulationTimeInterval, const double offDiagonalThreshold, const double timestepGrowthThreshold, const bool timestepGrowthRelative, const size_t timestepGrowthWindowSize)</td></tr>
+<tr class="memdesc:a26555ea09be620dabc5f9644be8f9908"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compose a trigger suitable for deciding engine re-partitioning during <a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">CVODE</a> solves.  <br /></td></tr>
+<tr class="separator:a26555ea09be620dabc5f9644be8f9908"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>CVODE-specific triggers that decide when to (re)partition the reaction network engine. </p>
+<p>This header provides three concrete Trigger&lt;CVODESolverStrategy::TimestepContext&gt; implementations:</p><ul>
+<li>SimulationTimeTrigger: fires when the simulated time advances by a fixed interval.</li>
+<li>OffDiagonalTrigger: fires when any off-diagonal Jacobian entry exceeds a threshold.</li>
+<li>TimestepCollapseTrigger: fires when the timestep changes sharply relative to a moving average.</li>
+</ul>
+<p>It also provides a convenience factory (makeEnginePartitioningTrigger) composing these triggers with logical combinators defined in <a class="el" href="trigger__logical_8h.html" title="Combinators for composing triggers with boolean logic (AND/OR/NOT/EveryNth).">trigger_logical.h</a>.</p>
+<p>See the implementation for details: <a class="el" href="engine__partitioning__trigger_8cpp.html">src/lib/solver/strategies/triggers/engine_partitioning_trigger.cpp</a></p>
+<dl class="section user"><dt>Related headers:</dt><dd><ul>
+<li><a class="el" href="trigger__abstract_8h.html">trigger_abstract.h</a>: base Trigger interface and lifecycle semantics</li>
+<li><a class="el" href="trigger__logical_8h.html" title="Combinators for composing triggers with boolean logic (AND/OR/NOT/EveryNth).">trigger_logical.h</a>: AND/OR/NOT/EveryNth composition utilities </li>
+</ul>
+</dd></dl>
+</div></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html">solver</a></li><li class="navelem"><a class="el" href="dir_230a420a279f78b45ea47b2d650bf1a7.html">strategies</a></li><li class="navelem"><a class="el" href="dir_3c6e26120bd25666a475751afc8a34bc.html">triggers</a></li><li class="navelem"><a class="el" href="engine__partitioning__trigger_8h.html">engine_partitioning_trigger.h</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/engine__partitioning__trigger_8h.js b/docs/html/engine__partitioning__trigger_8h.js
new file mode 100644
index 00000000..9525abb6
--- /dev/null
+++ b/docs/html/engine__partitioning__trigger_8h.js
@@ -0,0 +1,7 @@
+var engine__partitioning__trigger_8h =
+[
+    [ "gridfire::trigger::solver::CVODE::SimulationTimeTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger" ],
+    [ "gridfire::trigger::solver::CVODE::OffDiagonalTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger" ],
+    [ "gridfire::trigger::solver::CVODE::TimestepCollapseTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger" ],
+    [ "gridfire::trigger::solver::CVODE::makeEnginePartitioningTrigger", "namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html#a26555ea09be620dabc5f9644be8f9908", null ]
+];
\ No newline at end of file
diff --git a/docs/html/engine__priming_8cpp.html b/docs/html/engine__priming_8cpp.html
index 3058f0e6..2a3b86da 100644
--- a/docs/html/engine__priming_8cpp.html
+++ b/docs/html/engine__priming_8cpp.html
@@ -107,7 +107,6 @@ $(function(){initNavTree('engine__priming_8cpp.html',''); initResizable(true); }
 <div class="textblock"><code>#include &quot;<a class="el" href="engine__priming_8h.html">gridfire/engine/views/engine_priming.h</a>&quot;</code><br />
 <code>#include &quot;<a class="el" href="solver_8h.html">gridfire/solver/solver.h</a>&quot;</code><br />
 <code>#include &quot;fourdst/composition/species.h&quot;</code><br />
-<code>#include &quot;fourdst/logging/logging.h&quot;</code><br />
 <code>#include &quot;quill/LogMacros.h&quot;</code><br />
 <code>#include &quot;quill/Logger.h&quot;</code><br />
 <code>#include &lt;vector&gt;</code><br />
@@ -115,9 +114,6 @@ $(function(){initNavTree('engine__priming_8cpp.html',''); initResizable(true); }
 <code>#include &lt;unordered_set&gt;</code><br />
 <code>#include &lt;stdexcept&gt;</code><br />
 <code>#include &lt;unordered_map&gt;</code><br />
-<code>#include &lt;utility&gt;</code><br />
-<code>#include &lt;ranges&gt;</code><br />
-<code>#include &lt;cmath&gt;</code><br />
 </div><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
 Namespaces</h2></td></tr>
diff --git a/docs/html/engine__priming_8h.html b/docs/html/engine__priming_8h.html
index 55831c1e..d093b446 100644
--- a/docs/html/engine__priming_8h.html
+++ b/docs/html/engine__priming_8h.html
@@ -107,10 +107,8 @@ $(function(){initNavTree('engine__priming_8h.html',''); initResizable(true); });
 <div class="contents">
 <div class="textblock"><code>#include &quot;<a class="el" href="engine__abstract_8h.html">gridfire/engine/engine_abstract.h</a>&quot;</code><br />
 <code>#include &quot;<a class="el" href="engine__defined_8h.html">gridfire/engine/views/engine_defined.h</a>&quot;</code><br />
-<code>#include &quot;<a class="el" href="network_8h.html">gridfire/network.h</a>&quot;</code><br />
 <code>#include &quot;fourdst/logging/logging.h&quot;</code><br />
 <code>#include &quot;fourdst/composition/atomicSpecies.h&quot;</code><br />
-<code>#include &quot;fourdst/composition/composition.h&quot;</code><br />
 <code>#include &quot;quill/Logger.h&quot;</code><br />
 <code>#include &lt;vector&gt;</code><br />
 <code>#include &lt;string&gt;</code><br />
diff --git a/docs/html/error__engine_8h.html b/docs/html/error__engine_8h.html
index 425ff6eb..1f6282cb 100644
--- a/docs/html/error__engine_8h.html
+++ b/docs/html/error__engine_8h.html
@@ -107,7 +107,7 @@ $(function(){initNavTree('error__engine_8h.html',''); initResizable(true); });
 <div class="contents">
 <div class="textblock"><code>#include &lt;exception&gt;</code><br />
 <code>#include &lt;string&gt;</code><br />
-<code>#include &lt;iostream&gt;</code><br />
+<code>#include &lt;vector&gt;</code><br />
 </div><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
 Classes</h2></td></tr>
diff --git a/docs/html/exceptions_2bindings_8cpp.html b/docs/html/exceptions_2bindings_8cpp.html
index 5ca70398..82340a93 100644
--- a/docs/html/exceptions_2bindings_8cpp.html
+++ b/docs/html/exceptions_2bindings_8cpp.html
@@ -105,20 +105,17 @@ $(function(){initNavTree('exceptions_2bindings_8cpp.html',''); initResizable(tru
 </div><!--header-->
 <div class="contents">
 <div class="textblock"><code>#include &lt;pybind11/pybind11.h&gt;</code><br />
-<code>#include &lt;pybind11/stl.h&gt;</code><br />
-<code>#include &lt;pybind11/stl_bind.h&gt;</code><br />
-<code>#include &lt;iostream&gt;</code><br />
 <code>#include &quot;<a class="el" href="exceptions_2bindings_8h.html">bindings.h</a>&quot;</code><br />
 <code>#include &quot;<a class="el" href="exceptions_8h.html">gridfire/exceptions/exceptions.h</a>&quot;</code><br />
 </div><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:a15a0d54e4fe015a87d9f7a63284c2958" id="r_a15a0d54e4fe015a87d9f7a63284c2958"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a15a0d54e4fe015a87d9f7a63284c2958">register_exception_bindings</a> (py::module &amp;m)</td></tr>
-<tr class="separator:a15a0d54e4fe015a87d9f7a63284c2958"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5566602745756f64f21905217b6d21fd" id="r_a5566602745756f64f21905217b6d21fd"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5566602745756f64f21905217b6d21fd">register_exception_bindings</a> (const py::module &amp;m)</td></tr>
+<tr class="separator:a5566602745756f64f21905217b6d21fd"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Function Documentation</h2>
-<a id="a15a0d54e4fe015a87d9f7a63284c2958" name="a15a0d54e4fe015a87d9f7a63284c2958"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a15a0d54e4fe015a87d9f7a63284c2958">&#9670;&#160;</a></span>register_exception_bindings()</h2>
+<a id="a5566602745756f64f21905217b6d21fd" name="a5566602745756f64f21905217b6d21fd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5566602745756f64f21905217b6d21fd">&#9670;&#160;</a></span>register_exception_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -126,7 +123,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_exception_bindings </td>
           <td>(</td>
-          <td class="paramtype">py::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const py::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
diff --git a/docs/html/exceptions_2bindings_8cpp.js b/docs/html/exceptions_2bindings_8cpp.js
index a26e1547..3ef859ca 100644
--- a/docs/html/exceptions_2bindings_8cpp.js
+++ b/docs/html/exceptions_2bindings_8cpp.js
@@ -1,4 +1,4 @@
 var exceptions_2bindings_8cpp =
 [
-    [ "register_exception_bindings", "exceptions_2bindings_8cpp.html#a15a0d54e4fe015a87d9f7a63284c2958", null ]
+    [ "register_exception_bindings", "exceptions_2bindings_8cpp.html#a5566602745756f64f21905217b6d21fd", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/exceptions_2bindings_8h.html b/docs/html/exceptions_2bindings_8h.html
index cf08daf4..ce0e2800 100644
--- a/docs/html/exceptions_2bindings_8h.html
+++ b/docs/html/exceptions_2bindings_8h.html
@@ -108,12 +108,12 @@ $(function(){initNavTree('exceptions_2bindings_8h.html',''); initResizable(true)
 </div><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:a01725278af607be0d8f5a2d892a5ef73" id="r_a01725278af607be0d8f5a2d892a5ef73"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a01725278af607be0d8f5a2d892a5ef73">register_exception_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:a01725278af607be0d8f5a2d892a5ef73"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2a0ce1da699ce25f3afdce57cde65471" id="r_a2a0ce1da699ce25f3afdce57cde65471"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2a0ce1da699ce25f3afdce57cde65471">register_exception_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:a2a0ce1da699ce25f3afdce57cde65471"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Function Documentation</h2>
-<a id="a01725278af607be0d8f5a2d892a5ef73" name="a01725278af607be0d8f5a2d892a5ef73"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a01725278af607be0d8f5a2d892a5ef73">&#9670;&#160;</a></span>register_exception_bindings()</h2>
+<a id="a2a0ce1da699ce25f3afdce57cde65471" name="a2a0ce1da699ce25f3afdce57cde65471"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2a0ce1da699ce25f3afdce57cde65471">&#9670;&#160;</a></span>register_exception_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -121,7 +121,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_exception_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
diff --git a/docs/html/exceptions_2bindings_8h.js b/docs/html/exceptions_2bindings_8h.js
index 9d800d21..adabf26b 100644
--- a/docs/html/exceptions_2bindings_8h.js
+++ b/docs/html/exceptions_2bindings_8h.js
@@ -1,4 +1,4 @@
 var exceptions_2bindings_8h =
 [
-    [ "register_exception_bindings", "exceptions_2bindings_8h.html#a01725278af607be0d8f5a2d892a5ef73", null ]
+    [ "register_exception_bindings", "exceptions_2bindings_8h.html#a2a0ce1da699ce25f3afdce57cde65471", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/expectations_2bindings_8cpp.html b/docs/html/expectations_2bindings_8cpp.html
index a6f9a216..5491af09 100644
--- a/docs/html/expectations_2bindings_8cpp.html
+++ b/docs/html/expectations_2bindings_8cpp.html
@@ -112,12 +112,12 @@ $(function(){initNavTree('expectations_2bindings_8cpp.html',''); initResizable(t
 </div><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:ac6720822f6ad76636adbc1ae6febc2c2" id="r_ac6720822f6ad76636adbc1ae6febc2c2"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac6720822f6ad76636adbc1ae6febc2c2">register_expectation_bindings</a> (py::module &amp;m)</td></tr>
-<tr class="separator:ac6720822f6ad76636adbc1ae6febc2c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad8b382f2ef7888e5b49bcc117439d843" id="r_ad8b382f2ef7888e5b49bcc117439d843"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad8b382f2ef7888e5b49bcc117439d843">register_expectation_bindings</a> (const py::module &amp;m)</td></tr>
+<tr class="separator:ad8b382f2ef7888e5b49bcc117439d843"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Function Documentation</h2>
-<a id="ac6720822f6ad76636adbc1ae6febc2c2" name="ac6720822f6ad76636adbc1ae6febc2c2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac6720822f6ad76636adbc1ae6febc2c2">&#9670;&#160;</a></span>register_expectation_bindings()</h2>
+<a id="ad8b382f2ef7888e5b49bcc117439d843" name="ad8b382f2ef7888e5b49bcc117439d843"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad8b382f2ef7888e5b49bcc117439d843">&#9670;&#160;</a></span>register_expectation_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -125,7 +125,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_expectation_bindings </td>
           <td>(</td>
-          <td class="paramtype">py::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const py::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
diff --git a/docs/html/expectations_2bindings_8cpp.js b/docs/html/expectations_2bindings_8cpp.js
index 7ca8b2f5..5774952e 100644
--- a/docs/html/expectations_2bindings_8cpp.js
+++ b/docs/html/expectations_2bindings_8cpp.js
@@ -1,4 +1,4 @@
 var expectations_2bindings_8cpp =
 [
-    [ "register_expectation_bindings", "expectations_2bindings_8cpp.html#ac6720822f6ad76636adbc1ae6febc2c2", null ]
+    [ "register_expectation_bindings", "expectations_2bindings_8cpp.html#ad8b382f2ef7888e5b49bcc117439d843", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/expectations_2bindings_8h.html b/docs/html/expectations_2bindings_8h.html
index 4b4552a5..2f567207 100644
--- a/docs/html/expectations_2bindings_8h.html
+++ b/docs/html/expectations_2bindings_8h.html
@@ -108,12 +108,12 @@ $(function(){initNavTree('expectations_2bindings_8h.html',''); initResizable(tru
 </div><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:a12e0304a6d29af179118a29c8ea93dc0" id="r_a12e0304a6d29af179118a29c8ea93dc0"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a12e0304a6d29af179118a29c8ea93dc0">register_expectation_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:a12e0304a6d29af179118a29c8ea93dc0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac4570540d44fb7e3136f63448fc2c22c" id="r_ac4570540d44fb7e3136f63448fc2c22c"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac4570540d44fb7e3136f63448fc2c22c">register_expectation_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:ac4570540d44fb7e3136f63448fc2c22c"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Function Documentation</h2>
-<a id="a12e0304a6d29af179118a29c8ea93dc0" name="a12e0304a6d29af179118a29c8ea93dc0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a12e0304a6d29af179118a29c8ea93dc0">&#9670;&#160;</a></span>register_expectation_bindings()</h2>
+<a id="ac4570540d44fb7e3136f63448fc2c22c" name="ac4570540d44fb7e3136f63448fc2c22c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac4570540d44fb7e3136f63448fc2c22c">&#9670;&#160;</a></span>register_expectation_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -121,7 +121,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_expectation_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
diff --git a/docs/html/expectations_2bindings_8h.js b/docs/html/expectations_2bindings_8h.js
index d6cc8b64..fbb36cea 100644
--- a/docs/html/expectations_2bindings_8h.js
+++ b/docs/html/expectations_2bindings_8h.js
@@ -1,4 +1,4 @@
 var expectations_2bindings_8h =
 [
-    [ "register_expectation_bindings", "expectations_2bindings_8h.html#a12e0304a6d29af179118a29c8ea93dc0", null ]
+    [ "register_expectation_bindings", "expectations_2bindings_8h.html#ac4570540d44fb7e3136f63448fc2c22c", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/expected__engine_8h.html b/docs/html/expected__engine_8h.html
index b725d27c..68eebd33 100644
--- a/docs/html/expected__engine_8h.html
+++ b/docs/html/expected__engine_8h.html
@@ -108,6 +108,7 @@ $(function(){initNavTree('expected__engine_8h.html',''); initResizable(true); })
 <div class="contents">
 <div class="textblock"><code>#include &lt;string&gt;</code><br />
 <code>#include &lt;iostream&gt;</code><br />
+<code>#include &lt;utility&gt;</code><br />
 </div><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
 Classes</h2></td></tr>
diff --git a/docs/html/files.html b/docs/html/files.html
index 9cde0c85..eccadf2c 100644
--- a/docs/html/files.html
+++ b/docs/html/files.html
@@ -103,94 +103,124 @@ $(function(){initNavTree('files.html',''); initResizable(true); });
 </div><!--header-->
 <div class="contents">
 <div class="textblock">Here is a list of all files with brief descriptions:</div><div class="directory">
-<div class="levels">[detail level <span onclick="javascript:dynsection.toggleLevel(1);">1</span><span onclick="javascript:dynsection.toggleLevel(2);">2</span><span onclick="javascript:dynsection.toggleLevel(3);">3</span><span onclick="javascript:dynsection.toggleLevel(4);">4</span><span onclick="javascript:dynsection.toggleLevel(5);">5</span><span onclick="javascript:dynsection.toggleLevel(6);">6</span>]</div><table class="directory">
+<div class="levels">[detail level <span onclick="javascript:dynsection.toggleLevel(1);">1</span><span onclick="javascript:dynsection.toggleLevel(2);">2</span><span onclick="javascript:dynsection.toggleLevel(3);">3</span><span onclick="javascript:dynsection.toggleLevel(4);">4</span><span onclick="javascript:dynsection.toggleLevel(5);">5</span><span onclick="javascript:dynsection.toggleLevel(6);">6</span><span onclick="javascript:dynsection.toggleLevel(7);">7</span>]</div><table class="directory">
 <tr id="row_0_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_0_" class="arrow" onclick="dynsection.toggleFolder('0_')">&#9660;</span><span id="img_0_" class="iconfopen" onclick="dynsection.toggleFolder('0_')">&#160;</span><a class="el" href="dir_49e56c817e5e54854c35e136979f97ca.html" target="_self">docs</a></td><td class="desc"></td></tr>
 <tr id="row_0_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="iconfclosed"></span><a class="el" href="dir_c34d5e8363cf0aa3fabc4f3fad3412a4.html" target="_self">static</a></td><td class="desc"></td></tr>
 <tr id="row_1_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_1_" class="arrow" onclick="dynsection.toggleFolder('1_')">&#9660;</span><span id="img_1_" class="iconfopen" onclick="dynsection.toggleFolder('1_')">&#160;</span><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html" target="_self">src</a></td><td class="desc"></td></tr>
 <tr id="row_1_0_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_1_0_" class="arrow" onclick="dynsection.toggleFolder('1_0_')">&#9660;</span><span id="img_1_0_" class="iconfopen" onclick="dynsection.toggleFolder('1_0_')">&#160;</span><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html" target="_self">include</a></td><td class="desc"></td></tr>
 <tr id="row_1_0_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_1_0_0_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_')">&#9660;</span><span id="img_1_0_0_" class="iconfopen" onclick="dynsection.toggleFolder('1_0_0_')">&#160;</span><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html" target="_self">gridfire</a></td><td class="desc"></td></tr>
 <tr id="row_1_0_0_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_0_0_0_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_0_')">&#9658;</span><span id="img_1_0_0_0_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_0_')">&#160;</span><a class="el" href="dir_aff155d61c3b73b9ab7dcdc908c4d49e.html" target="_self">engine</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span id="arr_1_0_0_0_0_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_0_0_')">&#9658;</span><span id="img_1_0_0_0_0_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_0_0_')">&#160;</span><a class="el" href="dir_fedd162cb41c94f7e299c266e75251fd.html" target="_self">procedures</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_0_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="construction_8h.html" target="_self">construction.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_0_0_1_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__procedures_8h.html" target="_self">engine_procedures.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_0_0_2_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="priming_8h.html" target="_self">priming.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_0_1_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span id="arr_1_0_0_0_1_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_0_1_')">&#9658;</span><span id="img_1_0_0_0_1_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_0_1_')">&#160;</span><a class="el" href="dir_80d0745b866022f2047f807b3376dff7.html" target="_self">types</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_0_1_0_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="building_8h.html" target="_self">building.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_0_1_1_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__types_8h.html" target="_self">engine_types.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_0_1_2_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="reporting_8h.html" target="_self">reporting.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_0_2_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span id="arr_1_0_0_0_2_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_0_2_')">&#9658;</span><span id="img_1_0_0_0_2_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_0_2_')">&#160;</span><a class="el" href="dir_d5492b42d970deba31f48df1b35a6c47.html" target="_self">views</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_0_2_0_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__adaptive_8h.html" target="_self">engine_adaptive.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_0_2_1_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__defined_8h.html" target="_self">engine_defined.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_0_2_2_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__multiscale_8h.html" target="_self">engine_multiscale.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_0_2_3_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__priming_8h.html" target="_self">engine_priming.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_0_2_4_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__view__abstract_8h.html" target="_self">engine_view_abstract.h</a></td><td class="desc">Abstract interfaces for engine "views" in GridFire </td></tr>
-<tr id="row_1_0_0_0_2_5_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__views_8h.html" target="_self">engine_views.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_0_3_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine_8h.html" target="_self">engine.h</a></td><td class="desc">Core header for the GridFire reaction network engine module </td></tr>
-<tr id="row_1_0_0_0_4_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__abstract_8h.html" target="_self">engine_abstract.h</a></td><td class="desc">Abstract interfaces for reaction network engines in GridFire </td></tr>
-<tr id="row_1_0_0_0_5_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__approx8_8h.html" target="_self">engine_approx8.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_0_6_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__graph_8h.html" target="_self">engine_graph.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span id="arr_1_0_0_0_0_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_0_0_')">&#9658;</span><span id="img_1_0_0_0_0_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_0_0_')">&#160;</span><a class="el" href="dir_b893969db6254951682857c720518fa8.html" target="_self">diagnostics</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="dynamic__engine__diagnostics_8h.html" target="_self">dynamic_engine_diagnostics.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_1_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span id="arr_1_0_0_0_1_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_0_1_')">&#9658;</span><span id="img_1_0_0_0_1_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_0_1_')">&#160;</span><a class="el" href="dir_fedd162cb41c94f7e299c266e75251fd.html" target="_self">procedures</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_1_0_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="construction_8h.html" target="_self">construction.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_1_1_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__procedures_8h.html" target="_self">engine_procedures.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_1_2_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="priming_8h.html" target="_self">priming.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_2_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span id="arr_1_0_0_0_2_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_0_2_')">&#9658;</span><span id="img_1_0_0_0_2_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_0_2_')">&#160;</span><a class="el" href="dir_80d0745b866022f2047f807b3376dff7.html" target="_self">types</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_2_0_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="building_8h.html" target="_self">building.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_2_1_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__types_8h.html" target="_self">engine_types.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_2_2_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="reporting_8h.html" target="_self">reporting.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_3_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span id="arr_1_0_0_0_3_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_0_3_')">&#9658;</span><span id="img_1_0_0_0_3_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_0_3_')">&#160;</span><a class="el" href="dir_d5492b42d970deba31f48df1b35a6c47.html" target="_self">views</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_3_0_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__adaptive_8h.html" target="_self">engine_adaptive.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_3_1_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__defined_8h.html" target="_self">engine_defined.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_3_2_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__multiscale_8h.html" target="_self">engine_multiscale.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_3_3_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__priming_8h.html" target="_self">engine_priming.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_3_4_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__view__abstract_8h.html" target="_self">engine_view_abstract.h</a></td><td class="desc">Abstract interfaces for engine "views" in GridFire </td></tr>
+<tr id="row_1_0_0_0_3_5_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__views_8h.html" target="_self">engine_views.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_4_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine_8h.html" target="_self">engine.h</a></td><td class="desc">Core header for the GridFire reaction network engine module </td></tr>
+<tr id="row_1_0_0_0_5_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__abstract_8h.html" target="_self">engine_abstract.h</a></td><td class="desc">Abstract interfaces for reaction network engines in GridFire </td></tr>
+<tr id="row_1_0_0_0_6_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__approx8_8h.html" target="_self">engine_approx8.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_0_7_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__graph_8h.html" target="_self">engine_graph.h</a></td><td class="desc"></td></tr>
 <tr id="row_1_0_0_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_0_0_1_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_1_')">&#9658;</span><span id="img_1_0_0_1_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_1_')">&#160;</span><a class="el" href="dir_cd87a60aa1dbf4ee960e0533fd7a9743.html" target="_self">exceptions</a></td><td class="desc"></td></tr>
 <tr id="row_1_0_0_1_0_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="error__engine_8h.html" target="_self">error_engine.h</a></td><td class="desc"></td></tr>
 <tr id="row_1_0_0_1_1_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="exceptions_8h.html" target="_self">exceptions.h</a></td><td class="desc"></td></tr>
 <tr id="row_1_0_0_2_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_0_0_2_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_2_')">&#9658;</span><span id="img_1_0_0_2_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_2_')">&#160;</span><a class="el" href="dir_9f35e0f3e3878d201f80e9b6c966a769.html" target="_self">expectations</a></td><td class="desc"></td></tr>
 <tr id="row_1_0_0_2_0_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="expectations_8h.html" target="_self">expectations.h</a></td><td class="desc"></td></tr>
 <tr id="row_1_0_0_2_1_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="expected__engine_8h.html" target="_self">expected_engine.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_3_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_0_0_3_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_3_')">&#9658;</span><span id="img_1_0_0_3_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_3_')">&#160;</span><a class="el" href="dir_1c671bae89ad45c4f6571bd7c3fca7f2.html" target="_self">io</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_3_0_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="io_8h.html" target="_self">io.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_3_1_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="network__file_8h.html" target="_self">network_file.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_4_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_0_0_4_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_4_')">&#9658;</span><span id="img_1_0_0_4_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_4_')">&#160;</span><a class="el" href="dir_1d1d50ce0d70b163d7d102a960190628.html" target="_self">partition</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_4_0_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span id="arr_1_0_0_4_0_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_4_0_')">&#9658;</span><span id="img_1_0_0_4_0_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_4_0_')">&#160;</span><a class="el" href="dir_f575fd282ecf3769a887e0c3d3cafd55.html" target="_self">composite</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_4_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition__composite_8h.html" target="_self">partition_composite.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_4_1_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition_8h.html" target="_self">partition.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_4_2_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition__abstract_8h.html" target="_self">partition_abstract.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_4_3_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition__ground_8h.html" target="_self">partition_ground.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_4_4_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition__rauscher__thielemann_8h.html" target="_self">partition_rauscher_thielemann.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_4_5_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition__types_8h.html" target="_self">partition_types.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_4_6_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="rauscher__thielemann__partition__data_8h.html" target="_self">rauscher_thielemann_partition_data.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_4_7_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="rauscher__thielemann__partition__data__record_8h.html" target="_self">rauscher_thielemann_partition_data_record.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_5_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_0_0_5_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_5_')">&#9658;</span><span id="img_1_0_0_5_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_5_')">&#160;</span><a class="el" href="dir_f2d7b0c77cb2532170ac94ead6e4ba70.html" target="_self">reaction</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_5_0_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="reaclib_8h.html" target="_self">reaclib.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_5_1_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="reaction_8h.html" target="_self">reaction.h</a></td><td class="desc">Defines classes for representing and managing nuclear reactions </td></tr>
-<tr id="row_1_0_0_5_2_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="reactions__data_8h.html" target="_self">reactions_data.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_6_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_0_0_6_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_6_')">&#9658;</span><span id="img_1_0_0_6_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_6_')">&#160;</span><a class="el" href="dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html" target="_self">screening</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_6_0_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="screening_8h.html" target="_self">screening.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_6_1_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="screening__abstract_8h.html" target="_self">screening_abstract.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_6_2_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="screening__bare_8h.html" target="_self">screening_bare.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_6_3_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="screening__types_8h.html" target="_self">screening_types.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_6_4_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="screening__weak_8h.html" target="_self">screening_weak.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_7_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_0_0_7_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_7_')">&#9658;</span><span id="img_1_0_0_7_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_7_')">&#160;</span><a class="el" href="dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html" target="_self">solver</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_7_0_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="solver_8h.html" target="_self">solver.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_8_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_0_0_8_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_8_')">&#9658;</span><span id="img_1_0_0_8_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_8_')">&#160;</span><a class="el" href="dir_8e34b6fea5a3d13256b367f27bc2135d.html" target="_self">utils</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_8_0_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="logging_8h.html" target="_self">logging.h</a></td><td class="desc"></td></tr>
-<tr id="row_1_0_0_9_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="network_8h.html" target="_self">network.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_3_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_0_0_3_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_3_')">&#9658;</span><span id="img_1_0_0_3_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_3_')">&#160;</span><a class="el" href="dir_f4383b1846ef599868e873d917f1344c.html" target="_self">interfaces</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_3_0_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span id="arr_1_0_0_3_0_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_3_0_')">&#9658;</span><span id="img_1_0_0_3_0_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_3_0_')">&#160;</span><a class="el" href="dir_ab918a70d5de27403bd1202d71acc71b.html" target="_self">solver</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_3_0_0_" class="odd" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="solver__interfaces_8h.html" target="_self">solver_interfaces.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_4_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_0_0_4_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_4_')">&#9658;</span><span id="img_1_0_0_4_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_4_')">&#160;</span><a class="el" href="dir_1c671bae89ad45c4f6571bd7c3fca7f2.html" target="_self">io</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_4_0_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="io_8h.html" target="_self">io.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_4_1_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="network__file_8h.html" target="_self">network_file.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_5_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_0_0_5_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_5_')">&#9658;</span><span id="img_1_0_0_5_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_5_')">&#160;</span><a class="el" href="dir_1d1d50ce0d70b163d7d102a960190628.html" target="_self">partition</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_5_0_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span id="arr_1_0_0_5_0_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_5_0_')">&#9658;</span><span id="img_1_0_0_5_0_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_5_0_')">&#160;</span><a class="el" href="dir_f575fd282ecf3769a887e0c3d3cafd55.html" target="_self">composite</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_5_0_0_" class="odd" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition__composite_8h.html" target="_self">partition_composite.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_5_1_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition_8h.html" target="_self">partition.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_5_2_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition__abstract_8h.html" target="_self">partition_abstract.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_5_3_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition__ground_8h.html" target="_self">partition_ground.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_5_4_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition__rauscher__thielemann_8h.html" target="_self">partition_rauscher_thielemann.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_5_5_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition__types_8h.html" target="_self">partition_types.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_5_6_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="rauscher__thielemann__partition__data_8h.html" target="_self">rauscher_thielemann_partition_data.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_5_7_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="rauscher__thielemann__partition__data__record_8h.html" target="_self">rauscher_thielemann_partition_data_record.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_6_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_0_0_6_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_6_')">&#9658;</span><span id="img_1_0_0_6_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_6_')">&#160;</span><a class="el" href="dir_f2d7b0c77cb2532170ac94ead6e4ba70.html" target="_self">reaction</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_6_0_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span id="arr_1_0_0_6_0_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_6_0_')">&#9658;</span><span id="img_1_0_0_6_0_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_6_0_')">&#160;</span><a class="el" href="dir_67aa14af464fbd247881f6980be7deb5.html" target="_self">weak</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_6_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="weak_8h.html" target="_self">weak.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_6_0_1_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="weak__interpolator_8h.html" target="_self">weak_interpolator.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_6_0_2_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="weak__rate__library_8h.html" target="_self">weak_rate_library.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_6_0_3_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="weak__types_8h.html" target="_self">weak_types.h</a></td><td class="desc">Plain data structures and enums for weak reaction tables, interpolation payloads, and errors </td></tr>
+<tr id="row_1_0_0_6_1_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="reaclib_8h.html" target="_self">reaclib.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_6_2_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="reaction_8h.html" target="_self">reaction.h</a></td><td class="desc">Defines classes for representing and managing nuclear reactions </td></tr>
+<tr id="row_1_0_0_6_3_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="reactions__data_8h.html" target="_self">reactions_data.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_7_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_0_0_7_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_7_')">&#9658;</span><span id="img_1_0_0_7_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_7_')">&#160;</span><a class="el" href="dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html" target="_self">screening</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_7_0_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="screening_8h.html" target="_self">screening.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_7_1_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="screening__abstract_8h.html" target="_self">screening_abstract.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_7_2_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="screening__bare_8h.html" target="_self">screening_bare.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_7_3_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="screening__intermediate_8h.html" target="_self">screening_intermediate.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_7_4_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="screening__types_8h.html" target="_self">screening_types.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_7_5_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="screening__weak_8h.html" target="_self">screening_weak.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_8_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_0_0_8_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_8_')">&#9658;</span><span id="img_1_0_0_8_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_8_')">&#160;</span><a class="el" href="dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html" target="_self">solver</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_8_0_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span id="arr_1_0_0_8_0_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_8_0_')">&#9658;</span><span id="img_1_0_0_8_0_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_8_0_')">&#160;</span><a class="el" href="dir_230a420a279f78b45ea47b2d650bf1a7.html" target="_self">strategies</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_8_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span id="arr_1_0_0_8_0_0_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_8_0_0_')">&#9658;</span><span id="img_1_0_0_8_0_0_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_8_0_0_')">&#160;</span><a class="el" href="dir_3c6e26120bd25666a475751afc8a34bc.html" target="_self">triggers</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_8_0_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:112px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__partitioning__trigger_8h.html" target="_self">engine_partitioning_trigger.h</a></td><td class="desc">CVODE-specific triggers that decide when to (re)partition the reaction network engine </td></tr>
+<tr id="row_1_0_0_8_0_1_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="_c_v_o_d_e__solver__strategy_8h.html" target="_self">CVODE_solver_strategy.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_8_1_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="solver_8h.html" target="_self">solver.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_9_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_0_0_9_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_9_')">&#9658;</span><span id="img_1_0_0_9_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_9_')">&#160;</span><a class="el" href="dir_6ccae78e9032a1b4db4873aea5f3b43d.html" target="_self">trigger</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_9_0_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span id="arr_1_0_0_9_0_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_9_0_')">&#9658;</span><span id="img_1_0_0_9_0_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_9_0_')">&#160;</span><a class="el" href="dir_d2ba15782ddae84c3d0c5f0e63bda236.html" target="_self">procedures</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_9_0_0_" class="odd" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="trigger__pprint_8h.html" target="_self">trigger_pprint.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_9_1_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="trigger__abstract_8h.html" target="_self">trigger_abstract.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_9_2_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="trigger__logical_8h.html" target="_self">trigger_logical.h</a></td><td class="desc">Combinators for composing triggers with boolean logic (AND/OR/NOT/EveryNth) </td></tr>
+<tr id="row_1_0_0_9_3_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="trigger__result_8h.html" target="_self">trigger_result.h</a></td><td class="desc">Structured explanation node for trigger evaluations </td></tr>
+<tr id="row_1_0_0_10_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_0_0_10_" class="arrow" onclick="dynsection.toggleFolder('1_0_0_10_')">&#9658;</span><span id="img_1_0_0_10_" class="iconfclosed" onclick="dynsection.toggleFolder('1_0_0_10_')">&#160;</span><a class="el" href="dir_8e34b6fea5a3d13256b367f27bc2135d.html" target="_self">utils</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_10_0_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="logging_8h.html" target="_self">logging.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_10_1_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="table__format_8h.html" target="_self">table_format.h</a></td><td class="desc"></td></tr>
+<tr id="row_1_0_0_11_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="network_8h.html" target="_self">network.h</a></td><td class="desc"></td></tr>
 <tr id="row_1_1_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_1_1_" class="arrow" onclick="dynsection.toggleFolder('1_1_')">&#9660;</span><span id="img_1_1_" class="iconfopen" onclick="dynsection.toggleFolder('1_1_')">&#160;</span><a class="el" href="dir_c85d3e3c5052e9ad9ce18c6863244a25.html" target="_self">lib</a></td><td class="desc"></td></tr>
 <tr id="row_1_1_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_1_1_0_" class="arrow" onclick="dynsection.toggleFolder('1_1_0_')">&#9660;</span><span id="img_1_1_0_" class="iconfopen" onclick="dynsection.toggleFolder('1_1_0_')">&#160;</span><a class="el" href="dir_3cc0b3e3c66436f74054a789a4a47fbc.html" target="_self">engine</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_0_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_1_0_0_" class="arrow" onclick="dynsection.toggleFolder('1_1_0_0_')">&#9658;</span><span id="img_1_1_0_0_" class="iconfclosed" onclick="dynsection.toggleFolder('1_1_0_0_')">&#160;</span><a class="el" href="dir_43d540904cac5d711ae55af9d63e6471.html" target="_self">procedures</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_0_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="construction_8cpp.html" target="_self">construction.cpp</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_0_0_1_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="priming_8cpp.html" target="_self">priming.cpp</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_0_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_1_0_1_" class="arrow" onclick="dynsection.toggleFolder('1_1_0_1_')">&#9658;</span><span id="img_1_1_0_1_" class="iconfclosed" onclick="dynsection.toggleFolder('1_1_0_1_')">&#160;</span><a class="el" href="dir_e87948a39c0c6c3f66d9f5f967ab86bd.html" target="_self">views</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_0_1_0_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__adaptive_8cpp.html" target="_self">engine_adaptive.cpp</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_0_1_1_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__defined_8cpp.html" target="_self">engine_defined.cpp</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_0_1_2_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__multiscale_8cpp.html" target="_self">engine_multiscale.cpp</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_0_1_3_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__priming_8cpp.html" target="_self">engine_priming.cpp</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_0_2_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__approx8_8cpp.html" target="_self">engine_approx8.cpp</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_0_3_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__graph_8cpp.html" target="_self">engine_graph.cpp</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_1_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_1_1_1_" class="arrow" onclick="dynsection.toggleFolder('1_1_1_')">&#9660;</span><span id="img_1_1_1_" class="iconfopen" onclick="dynsection.toggleFolder('1_1_1_')">&#160;</span><a class="el" href="dir_65bc51589f8002bfcb72faf47ab41180.html" target="_self">io</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_1_0_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="network__file_8cpp.html" target="_self">network_file.cpp</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_2_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_1_1_2_" class="arrow" onclick="dynsection.toggleFolder('1_1_2_')">&#9660;</span><span id="img_1_1_2_" class="iconfopen" onclick="dynsection.toggleFolder('1_1_2_')">&#160;</span><a class="el" href="dir_fe5109f07276e0a4a472af6b22fd99c7.html" target="_self">partition</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_2_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_1_2_0_" class="arrow" onclick="dynsection.toggleFolder('1_1_2_0_')">&#9658;</span><span id="img_1_1_2_0_" class="iconfclosed" onclick="dynsection.toggleFolder('1_1_2_0_')">&#160;</span><a class="el" href="dir_a2537f6f0ba382cc4200a69fb7d9b7da.html" target="_self">composite</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_2_0_0_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition__composite_8cpp.html" target="_self">partition_composite.cpp</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_2_1_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition__ground_8cpp.html" target="_self">partition_ground.cpp</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_2_2_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition__rauscher__thielemann_8cpp.html" target="_self">partition_rauscher_thielemann.cpp</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_3_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_1_1_3_" class="arrow" onclick="dynsection.toggleFolder('1_1_3_')">&#9660;</span><span id="img_1_1_3_" class="iconfopen" onclick="dynsection.toggleFolder('1_1_3_')">&#160;</span><a class="el" href="dir_902e06e9d82d80b06df7be6e417fa9ee.html" target="_self">reaction</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_3_0_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="reaclib_8cpp.html" target="_self">reaclib.cpp</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_3_1_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="reaction_8cpp.html" target="_self">reaction.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_0_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_1_0_0_" class="arrow" onclick="dynsection.toggleFolder('1_1_0_0_')">&#9658;</span><span id="img_1_1_0_0_" class="iconfclosed" onclick="dynsection.toggleFolder('1_1_0_0_')">&#160;</span><a class="el" href="dir_c99e86cd0291aa23d2204e664fe571c1.html" target="_self">diagnostics</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_0_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="dynamic__engine__diagnostics_8cpp.html" target="_self">dynamic_engine_diagnostics.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_0_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_1_0_1_" class="arrow" onclick="dynsection.toggleFolder('1_1_0_1_')">&#9658;</span><span id="img_1_1_0_1_" class="iconfclosed" onclick="dynsection.toggleFolder('1_1_0_1_')">&#160;</span><a class="el" href="dir_43d540904cac5d711ae55af9d63e6471.html" target="_self">procedures</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_0_1_0_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="construction_8cpp.html" target="_self">construction.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_0_1_1_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="priming_8cpp.html" target="_self">priming.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_0_2_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_1_0_2_" class="arrow" onclick="dynsection.toggleFolder('1_1_0_2_')">&#9658;</span><span id="img_1_1_0_2_" class="iconfclosed" onclick="dynsection.toggleFolder('1_1_0_2_')">&#160;</span><a class="el" href="dir_e87948a39c0c6c3f66d9f5f967ab86bd.html" target="_self">views</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_0_2_0_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__adaptive_8cpp.html" target="_self">engine_adaptive.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_0_2_1_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__defined_8cpp.html" target="_self">engine_defined.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_0_2_2_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__multiscale_8cpp.html" target="_self">engine_multiscale.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_0_2_3_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__priming_8cpp.html" target="_self">engine_priming.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_0_3_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__approx8_8cpp.html" target="_self">engine_approx8.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_0_4_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__graph_8cpp.html" target="_self">engine_graph.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_1_1_1_" class="arrow" onclick="dynsection.toggleFolder('1_1_1_')">&#9660;</span><span id="img_1_1_1_" class="iconfopen" onclick="dynsection.toggleFolder('1_1_1_')">&#160;</span><a class="el" href="dir_65bc51589f8002bfcb72faf47ab41180.html" target="_self">io</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_1_0_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="network__file_8cpp.html" target="_self">network_file.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_2_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_1_1_2_" class="arrow" onclick="dynsection.toggleFolder('1_1_2_')">&#9660;</span><span id="img_1_1_2_" class="iconfopen" onclick="dynsection.toggleFolder('1_1_2_')">&#160;</span><a class="el" href="dir_fe5109f07276e0a4a472af6b22fd99c7.html" target="_self">partition</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_2_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_1_2_0_" class="arrow" onclick="dynsection.toggleFolder('1_1_2_0_')">&#9658;</span><span id="img_1_1_2_0_" class="iconfclosed" onclick="dynsection.toggleFolder('1_1_2_0_')">&#160;</span><a class="el" href="dir_a2537f6f0ba382cc4200a69fb7d9b7da.html" target="_self">composite</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_2_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition__composite_8cpp.html" target="_self">partition_composite.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_2_1_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition__ground_8cpp.html" target="_self">partition_ground.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_2_2_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="partition__rauscher__thielemann_8cpp.html" target="_self">partition_rauscher_thielemann.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_3_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_1_1_3_" class="arrow" onclick="dynsection.toggleFolder('1_1_3_')">&#9660;</span><span id="img_1_1_3_" class="iconfopen" onclick="dynsection.toggleFolder('1_1_3_')">&#160;</span><a class="el" href="dir_902e06e9d82d80b06df7be6e417fa9ee.html" target="_self">reaction</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_3_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_1_3_0_" class="arrow" onclick="dynsection.toggleFolder('1_1_3_0_')">&#9658;</span><span id="img_1_1_3_0_" class="iconfclosed" onclick="dynsection.toggleFolder('1_1_3_0_')">&#160;</span><a class="el" href="dir_da65b9a371696ae0281f77edf1c03876.html" target="_self">weak</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_3_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="weak_8cpp.html" target="_self">weak.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_3_0_1_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="weak__interpolator_8cpp.html" target="_self">weak_interpolator.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_3_1_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="reaclib_8cpp.html" target="_self">reaclib.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_3_2_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="reaction_8cpp.html" target="_self">reaction.cpp</a></td><td class="desc"></td></tr>
 <tr id="row_1_1_4_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_1_1_4_" class="arrow" onclick="dynsection.toggleFolder('1_1_4_')">&#9660;</span><span id="img_1_1_4_" class="iconfopen" onclick="dynsection.toggleFolder('1_1_4_')">&#160;</span><a class="el" href="dir_c73541f51459c9e567d01a066f229f1c.html" target="_self">screening</a></td><td class="desc"></td></tr>
 <tr id="row_1_1_4_0_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="screening__bare_8cpp.html" target="_self">screening_bare.cpp</a></td><td class="desc"></td></tr>
 <tr id="row_1_1_4_1_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="screening__types_8cpp.html" target="_self">screening_types.cpp</a></td><td class="desc"></td></tr>
 <tr id="row_1_1_4_2_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="screening__weak_8cpp.html" target="_self">screening_weak.cpp</a></td><td class="desc"></td></tr>
 <tr id="row_1_1_5_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_1_1_5_" class="arrow" onclick="dynsection.toggleFolder('1_1_5_')">&#9660;</span><span id="img_1_1_5_" class="iconfopen" onclick="dynsection.toggleFolder('1_1_5_')">&#160;</span><a class="el" href="dir_4fd0dc9a50f7a53e22cb356c650f915e.html" target="_self">solver</a></td><td class="desc"></td></tr>
-<tr id="row_1_1_5_0_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="solver_8cpp.html" target="_self">solver.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_5_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_1_1_5_0_" class="arrow" onclick="dynsection.toggleFolder('1_1_5_0_')">&#9658;</span><span id="img_1_1_5_0_" class="iconfclosed" onclick="dynsection.toggleFolder('1_1_5_0_')">&#160;</span><a class="el" href="dir_b0553efdd4ad7f265c0580564941af0c.html" target="_self">strategies</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_5_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span id="arr_1_1_5_0_0_" class="arrow" onclick="dynsection.toggleFolder('1_1_5_0_0_')">&#9658;</span><span id="img_1_1_5_0_0_" class="iconfclosed" onclick="dynsection.toggleFolder('1_1_5_0_0_')">&#160;</span><a class="el" href="dir_897cfbcdbf2b76d535de4ec754728fa0.html" target="_self">triggers</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_5_0_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:96px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="engine__partitioning__trigger_8cpp.html" target="_self">engine_partitioning_trigger.cpp</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_5_0_1_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="_c_v_o_d_e__solver__strategy_8cpp.html" target="_self">CVODE_solver_strategy.cpp</a></td><td class="desc"></td></tr>
 <tr id="row_1_1_6_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_1_1_6_" class="arrow" onclick="dynsection.toggleFolder('1_1_6_')">&#9660;</span><span id="img_1_1_6_" class="iconfopen" onclick="dynsection.toggleFolder('1_1_6_')">&#160;</span><a class="el" href="dir_87d18a4dc5174905bfd7d2dc734defe6.html" target="_self">utils</a></td><td class="desc"></td></tr>
 <tr id="row_1_1_6_0_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="logging_8cpp.html" target="_self">logging.cpp</a></td><td class="desc"></td></tr>
 <tr id="row_1_1_7_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icondoc"></span><a class="el" href="network_8cpp.html" target="_self">network.cpp</a></td><td class="desc"></td></tr>
diff --git a/docs/html/functions.html b/docs/html/functions.html
index 939250ac..1165d263 100644
--- a/docs/html/functions.html
+++ b/docs/html/functions.html
@@ -102,6 +102,7 @@ $(function(){initNavTree('functions.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
 
 <h3><a id="index_a" name="index_a"></a>- a -</h3><ul>
+<li>A&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#aee9ee73218397780a2a7708c29779c73">gridfire::rates::weak::RateDataRow</a></li>
 <li>a&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a677505655a1c6922dfa9b32b70d7e815">gridfire::partition::record::RauscherThielemannPartitionDataRecord</a></li>
 <li>a0&#160;:&#160;<a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2fa6b65e300dcd181222b743c2b3d6ed">gridfire::reaction::RateCoefficientSet</a></li>
 <li>a1&#160;:&#160;<a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ace9dbd928e179784e47eaa108ce8d721">gridfire::reaction::RateCoefficientSet</a></li>
@@ -111,15 +112,22 @@ $(function(){initNavTree('functions.html',''); initResizable(true); });
 <li>a5&#160;:&#160;<a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a8c79db4e649b4eb1d29c43ebe4e95458">gridfire::reaction::RateCoefficientSet</a></li>
 <li>a6&#160;:&#160;<a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html#adf8e6ed7f91cb9e15d1469a808b1877a">gridfire::reaction::RateCoefficientSet</a></li>
 <li>AdaptiveEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455">gridfire::AdaptiveEngineView</a></li>
-<li>add_reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#a14a24cb8ea25a1514134acc51197f1de">gridfire::reaction::LogicalReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a339dbbf883b6ae20e33d9782d8376bcf">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
+<li>add_reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a69508797ca0793f6d3f58de4e0b97667">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1">gridfire::ReactionSet</a></li>
 <li>ADDouble&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">gridfire::screening::ScreeningModel</a></li>
 <li>affected_species_indices&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3e2e67e532970738d20491ea56b170f3">gridfire::GraphEngine::PrecomputedReaction</a></li>
 <li>aIon&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#a296e54c1b22f0c5d4d07a13577c6e069">gridfire::approx8::Approx8Net</a></li>
-<li>algebraic_indices&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ab11be6e7afeef1ac9e4314ad8345e0b0">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
-<li>all_species()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224">gridfire::reaction::Reaction</a></li>
-<li>analyzeTimescalePoolConnectivity()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#af13e764c118a6cc51847384e9c70e05b">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>algebraic_species&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#aff54b71dd17051bc991f747a328c7d8e">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
+<li>all_species()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a6e567323ca019eadcbb9dbb814ebeb0b">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#ace0b2bee91702e0ab97b6fc74999d6f0">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a445777acbbee2032d83a256181a90e3c">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa13cd9097229fcc99128d9286b8f17e6">gridfire::reaction::Reaction</a></li>
+<li>amu&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abe06f72b5b646cb3f1462b56d94a1de4">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>analyzeTimescalePoolConnectivity()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a05e45017bbb772c586f483bd527004ee">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>AndTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a969738baf0bda97664715937d4bc403e">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></li>
 <li>Approx8Network()&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a65066078081c544be4e56e25eb407c8b">gridfire::approx8::Approx8Network</a></li>
 <li>AtomicReverseRate()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf">gridfire::GraphEngine::AtomicReverseRate</a></li>
+<li>AtomicWeakRate()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a46d76ca50ee00198a9f4a873c6ceb874">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></li>
+<li>available_isotopes()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a976f84b6f6e33b5f3dd733a771afd7ba">gridfire::rates::weak::WeakRateInterpolator</a></li>
+<li>axis&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#afb2af3df6ec5ea439b5ea55571975391">gridfire::rates::weak::BoundsErrorInfo</a></li>
+<li>axisMaxValue&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a6371b8f8c45a9b069b19dd968ff81b28">gridfire::rates::weak::BoundsErrorInfo</a></li>
+<li>axisMinValue&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a07dfb669f73b029a71eb59cbbed69f42">gridfire::rates::weak::BoundsErrorInfo</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_b.html b/docs/html/functions_b.html
index 69795266..693e124b 100644
--- a/docs/html/functions_b.html
+++ b/docs/html/functions_b.html
@@ -103,11 +103,12 @@ $(function(){initNavTree('functions_b.html',''); initResizable(true); });
 
 <h3><a id="index_b" name="index_b"></a>- b -</h3><ul>
 <li>BACK&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329ad8c6323fcc54dfc5319fbd935ae4f75d">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
-<li>begin()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#a4ae3806e5e1a802b86a6de292d043476">gridfire::reaction::LogicalReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a87257704009fcd57b553f86cdaacb597">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
+<li>begin()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a1353d7d2208497b38799bf69f574c275">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613">gridfire::ReactionSet</a></li>
 <li>bin()&#160;:&#160;<a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3">gridfire::QSECacheKey</a></li>
 <li>bound&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a5f673ab0425f06f3639cc9b5200ee3af">gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope</a></li>
 <li>Bounds&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
-<li>buildConnectivityGraph()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aae0865e361dfeb23984d70409fdd9f39">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>boundsErrorInfo&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a1541a5280bd1b3f90bc62d7c0e1f80a1">gridfire::rates::weak::InterpolationError</a></li>
+<li>buildConnectivityGraph()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a5d1c11f3c0883385833462dd088f6f89">gridfire::MultiscalePartitioningEngineView</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_c.html b/docs/html/functions_c.html
index 0d91a5ec..7e38ebed 100644
--- a/docs/html/functions_c.html
+++ b/docs/html/functions_c.html
@@ -102,44 +102,52 @@ $(function(){initNavTree('functions_c.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
 
 <h3><a id="index_c" name="index_c"></a>- c -</h3><ul>
-<li>c&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306">gridfire::GraphEngine::constants</a></li>
-<li>cached_result&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adc814e5288f42c8eaf21c628858881a0">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
-<li>cached_time&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#afaebf35ef65567a7c824d5c14d479bb3">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
-<li>calculate_forward_rate_log_derivative()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#aa4b8d0d30459f360ff6e29d848e943d5">gridfire::reaction::LogicalReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061">gridfire::reaction::Reaction</a></li>
-<li>calculate_rate()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#a1d2fb3b6a6a1860ace98b32447d1dd1b">gridfire::reaction::LogicalReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec">gridfire::reaction::Reaction</a></li>
-<li>calculateAllDerivatives()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#af41df9ce979b6410e12642cb093916c9">gridfire::GraphEngine</a></li>
-<li>calculateAllDerivativesUsingPrecomputation()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a97f98706b51fbe0d167ed81ffe58c438">gridfire::GraphEngine</a></li>
-<li>calculateAllReactionFlows()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#abdbaf4b87629efe43ac1255dad424c0c">gridfire::AdaptiveEngineView</a></li>
-<li>calculateFactors_impl()&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a2695206d46b9d2c2503f8e58c44df88f">gridfire::screening::WeakScreeningModel</a></li>
-<li>calculateMolarReactionFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a">PyDynamicEngine</a></li>
-<li>calculateReverseMolarReactionFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a17774cd9ffcf1ba94019df766a0984a0">gridfire::GraphEngine</a></li>
-<li>calculateReverseRate()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28">gridfire::GraphEngine</a></li>
+<li>c&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306">gridfire::GraphEngine::constants</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab176a60ea64181d84be3bb6496ad0b0e">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>calculate_energy_generation_rate()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a091d6d4aa59f788c97f9b5481f46f1b5">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">gridfire::reaction::Reaction</a></li>
+<li>calculate_log_rate_partial_deriv_wrt_T9()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac2d5366d4b5766413db34558dbce3cb3">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#aec9859c030364e1d4a740197514731db">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a9b1363314159eaf9c56aaa233f5eebd6">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa2b615e764bb005e526ca9327319c735">gridfire::reaction::Reaction</a></li>
+<li>calculate_rate()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a05df0657efed55eb4262c7834d81400a">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#abb3e2b9c5404f45fc5656eeac1d06a6c">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ac21a726884930e6a00792e7c3eb43f42">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#acd16b1daf13456b3523362a37b1bf9b0">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a83c121480533593adfd68c4a67a649f1">gridfire::reaction::Reaction</a></li>
+<li>calculate_rhs()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a38e0f02ba54e217e9638260d9651b1c3">gridfire::solver::CVODESolverStrategy</a></li>
+<li>calculateAllDerivatives()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a8873331f5ae40a3f640dedbbed685ed9">gridfire::GraphEngine</a></li>
+<li>calculateAllDerivativesUsingPrecomputation()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#aef12443d7980301d8bb89f4ba4890450">gridfire::GraphEngine</a></li>
+<li>calculateAllReactionFlows()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ab5397d217039f096acededd4d2779780">gridfire::AdaptiveEngineView</a></li>
+<li>calculateEpsDerivatives()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a5d1b50afd2fba6af75e976a4f9c9dcbc">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a06aca977aafb4784fd167acb8c02dda2">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a264bd5a8891c8c5f0dff32867effe547">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ae0c9159cc3467fd85d1a5895f1786c47">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a99f9116d5a18afcbf0e808ef111d1be8">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>calculateFactors_impl()&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a48a3392d735c61b15b4855c823acfada">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html#a794b7781f07343383da3894208cfbfa9">gridfire::screening::IntermediateScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#aa9f95ba8c052dacb72295775516b7e5f">gridfire::screening::WeakScreeningModel</a></li>
+<li>calculateMolarReactionFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a3c1e27b45051c4ba481a2b87513982ed">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a74298377d0432ae3d577be0e9e6052b3">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a39cf5b738eea0a275bf8c0eb5789fab3">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a1675859971f0bd2db0650f8da54ed7eb">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a87687a960f263a4e1bc035e4d0a345db">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a">PyDynamicEngine</a></li>
+<li>calculateReverseMolarReactionFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a972d0705351167dc889a2f6c442e7a93">gridfire::GraphEngine</a></li>
+<li>calculateReverseRate()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#accf01734524a706ad03c9b9898af54b3">gridfire::GraphEngine</a></li>
 <li>calculateReverseRateTwoBody()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755">gridfire::GraphEngine</a></li>
-<li>calculateReverseRateTwoBodyDerivative()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7">gridfire::GraphEngine</a></li>
-<li>calculateRHSAndEnergy()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb">gridfire::Engine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a">PyDynamicEngine</a>, <a class="el" href="class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d">PyEngine</a></li>
-<li>calculateScreeningFactors()&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde">gridfire::screening::ScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c">gridfire::screening::WeakScreeningModel</a>, <a class="el" href="class_py_screening.html#a2b8756c197eb89e77cb6dd231c979315">PyScreening</a></li>
-<li>chapter&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc">gridfire::reaclib::ReactionRecord</a>, <a class="el" href="classgridfire_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629">gridfire::reaction::Reaction</a></li>
-<li>clear()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a05f71d318564d880079fd6c96d59ae21">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>clone()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="class_py_partition_function.html#af918b357e38fb82499ad53584557c43d">PyPartitionFunction</a></li>
+<li>calculateReverseRateTwoBodyDerivative()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a9340db538a507b96e186b60ba0450205">gridfire::GraphEngine</a></li>
+<li>calculateRHSAndEnergy()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac5545d546166de94514871d7ad7b8669">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#af273b29d7700cdc34da6e2712fffc5c2">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740">gridfire::Engine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a7acc98647427981a9602d251c9288012">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a5c1ab19bc3394a5d29241ef02073c4cb">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a">PyDynamicEngine</a>, <a class="el" href="class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d">PyEngine</a></li>
+<li>calculateScreeningFactors()&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ad252ce1de82401bab24747aabf0c8a3a">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html#a86a218ce82306ed582296cbeb3de0250">gridfire::screening::IntermediateScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#ab08c4490f9da18254a7c6f29be1f62ce">gridfire::screening::ScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a6a215d082b0d05126fb2b19fd1983446">gridfire::screening::WeakScreeningModel</a>, <a class="el" href="class_py_screening.html#aa67b5f0528006d9c742033b8c5ab3a05">PyScreening</a></li>
+<li>captured_exception&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a3e089139de2ba47e96dfe22c14d24e9e">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></li>
+<li>causes&#160;:&#160;<a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html#a7cf4d21d3cd3e53b62736932b44072cd">gridfire::trigger::TriggerResult</a></li>
+<li>chapter&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc">gridfire::reaclib::ReactionRecord</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#abe189c43e4d509d9d05dd205861ceddc">gridfire::reaction::ReaclibReaction</a></li>
+<li>check()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#aaefdfa86856f9f7839b6a7fdffa4a579">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69fbb099f8d13d39602f58fa8aa8e7f2">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#ae453a72df20fdd416443ef7867f86b92">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#ac8be54d91e77ed16ae3cca2417d82e0a">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3855b15459217383647ecdf12bc35775">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a50df7fefee167390522aa258fa6ee960">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a04598611b0807cad395bdd2fbc41a6c2">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
+<li>cleanup_cvode_resources()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a7f6786780137de1a136e081c537a9667">gridfire::solver::CVODESolverStrategy</a></li>
+<li>clear()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300">gridfire::ReactionSet</a></li>
+<li>clone()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac10e1451d20876f6eab199e127f213c7">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a588a8c19970463d97f5aa333fcd312dc">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad113b9cb64c449f9449c4cce4fa64076">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a54fde02e7010e806136f976ab64b1740">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab95ce7fb022a9432bdc77f14679221ee">gridfire::reaction::Reaction</a>, <a class="el" href="class_py_partition_function.html#af918b357e38fb82499ad53584557c43d">PyPartitionFunction</a></li>
 <li>coeffs&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0">gridfire::reaclib::ReactionRecord</a></li>
 <li>collect()&#160;:&#160;<a class="el" href="classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e">gridfire::DefinedEngineView</a></li>
 <li>collectAtomicReverseRateAtomicBases()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746">gridfire::GraphEngine</a></li>
 <li>collectNetworkSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa">gridfire::GraphEngine</a></li>
+<li>Column()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_column.html#a7d7e4f4cf6f8e03725afeb9f664321b8">gridfire::utils::Column&lt; T &gt;</a></li>
 <li>CompositePartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#ad80743933712de627c6a69d06d42ceb5">gridfire::partition::CompositePartitionFunction</a></li>
 <li>composition&#160;:&#160;<a class="el" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">gridfire::NetIn</a>, <a class="el" href="structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a">gridfire::NetOut</a></li>
-<li>compute_and_cache()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
 <li>Config&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036">gridfire::io::SimpleReactionListFileParser</a></li>
-<li>constructCandidateGroups()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ac206840057bac65b7f7738e6dfd1047a">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>constructCandidateGroups()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aaabaae8e33ca8a05a2aa1f374e792795">gridfire::MultiscalePartitioningEngineView</a></li>
 <li>constructPrimingReactionSet()&#160;:&#160;<a class="el" href="classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f">gridfire::NetworkPrimingEngineView</a></li>
 <li>constructReactionIndexMap()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68">gridfire::DefinedEngineView</a></li>
 <li>constructSpeciesIndexMap()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985">gridfire::DefinedEngineView</a></li>
-<li>contains()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a7777ecd0f594fdf66ce57d22610fad3c">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>contains_product()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a443ec5d7138764b32975232e13071ccf">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>contains_reactant()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac42606350d7557106f7954b1f114c128">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>contains_species()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad870856d206d93f27125c88d44ff9e34">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
+<li>contains()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a745b161968f37873b5d40fe6bf9d2118">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#adaeb5d72faf7d55d4e26f6e1fcba21c1">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a171b690e1abaf23f11a94c39e9f8c944">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a768db057d358240d4825c21869af0792">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387">gridfire::ReactionSet</a></li>
+<li>contains_product()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a957b5bfe70e536290ef677a7c5b6643f">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a5a17ca61d069749960e5a83e58c0b8a1">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a4e4811436d09afaa4a14c51d9af71f88">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a2708d2e8f42159df6605a5948b13c4c5">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e">gridfire::ReactionSet</a></li>
+<li>contains_reactant()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a98095e6536d9a6434c5955f4c169d505">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#afca3afba45a3db79980c8fe18c87c750">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a65a12e5f6180873866cfaaf130fd1156">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab28bf4f9417ecabcc8350bae449fedd5">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2">gridfire::ReactionSet</a></li>
+<li>contains_species()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a">gridfire::ReactionSet</a></li>
 <li>convert_netIn()&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a56426da6f1af7eb8a6d1cc70bc8e742a">gridfire::approx8::Approx8Network</a></li>
 <li>culling&#160;:&#160;<a class="el" href="structgridfire_1_1_net_in.html#a6a5e909b46094ffa20da9a3da906e43f">gridfire::NetIn</a></li>
-<li>cullReactionsByFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08">gridfire::AdaptiveEngineView</a></li>
+<li>cullReactionsByFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a95fbfb7f2bdbf80195f1ea0aff8d62fb">gridfire::AdaptiveEngineView</a></li>
+<li>cvode_jac_wrapper()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ae13fc9c21f595edbee1c9b7debaa61b3">gridfire::solver::CVODESolverStrategy</a></li>
+<li>cvode_rhs_wrapper()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a14c620ef75749c8ef3dfdb84132e5620">gridfire::solver::CVODESolverStrategy</a></li>
+<li>CVODESolverStrategy()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a924a541da3b205818f90b50d675631c0">gridfire::solver::CVODESolverStrategy</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_d.html b/docs/html/functions_d.html
index eca935df..9699736f 100644
--- a/docs/html/functions_d.html
+++ b/docs/html/functions_d.html
@@ -102,15 +102,24 @@ $(function(){initNavTree('functions_d.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
 
 <h3><a id="index_d" name="index_d"></a>- d -</h3><ul>
-<li>data&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070">gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope</a></li>
+<li>d_log_antineutrino_loss_bd&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a87894b5fdb0323c41f8e1e179ffefd1e">gridfire::rates::weak::WeakRateDerivatives</a></li>
+<li>d_log_beta_minus&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a54ba76b67d037954af1cbd6052becc61">gridfire::rates::weak::WeakRateDerivatives</a></li>
+<li>d_log_beta_plus&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#ab79353551bc5f832c986d24384d8a53a">gridfire::rates::weak::WeakRateDerivatives</a></li>
+<li>d_log_electron_capture&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a5e15e3d4d03288bd6f5dfc7054120514">gridfire::rates::weak::WeakRateDerivatives</a></li>
+<li>d_log_neutrino_loss_ec&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a415f5ff7ee18cc241eab5fbf6a0cdc17">gridfire::rates::weak::WeakRateDerivatives</a></li>
+<li>d_log_positron_capture&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a3cf82898078fcc9aa69344b4d2cf8783">gridfire::rates::weak::WeakRateDerivatives</a></li>
+<li>data&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070">gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#ad0df5ef84e3a78d881838a3bb014db83">gridfire::rates::weak::IsotopeGrid</a></li>
 <li>DefinedEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92">gridfire::DefinedEngineView</a></li>
 <li>density()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc">gridfire::exceptions::StaleEngineTrigger</a>, <a class="el" href="structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577">gridfire::NetIn</a></li>
-<li>describe()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ab032139a719e551f888ae012ef8018ee">gridfire::solver::DirectNetworkSolver::TimestepContext</a>, <a class="el" href="structgridfire_1_1solver_1_1_solver_context_base.html#a9cbef3cabc8524e542613ee50d8860c6">gridfire::solver::SolverContextBase</a></li>
-<li>describe_callback_context()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a053c9c1343af8f30ced69707e1d899e3">gridfire::solver::DirectNetworkSolver</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#ae09169769774f17df8701c42a64ed656">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>, <a class="el" href="class_py_dynamic_network_solver_strategy.html#a147a0a543268427a5930143902217ac3">PyDynamicNetworkSolverStrategy</a></li>
+<li>dEps_dRho&#160;:&#160;<a class="el" href="structgridfire_1_1_energy_derivatives.html#adc09db042b1fdee7468c807491245046">gridfire::EnergyDerivatives</a>, <a class="el" href="structgridfire_1_1_net_out.html#ad0bde670fb87bcab4de413e8284d624e">gridfire::NetOut</a></li>
+<li>dEps_dT&#160;:&#160;<a class="el" href="structgridfire_1_1_energy_derivatives.html#a70ae455c021a950fda7bda3022456542">gridfire::EnergyDerivatives</a>, <a class="el" href="structgridfire_1_1_net_out.html#a210c0c395bc012c8ce6bef8cc6b683d6">gridfire::NetOut</a></li>
+<li>describe()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#ae3c6320ce7a8f41c9ae36c42d62b4204">gridfire::solver::CVODESolverStrategy::TimestepContext</a>, <a class="el" href="structgridfire_1_1solver_1_1_solver_context_base.html#a9cbef3cabc8524e542613ee50d8860c6">gridfire::solver::SolverContextBase</a>, <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a2dcd635c6bdbcfe517adca6e2bd5c408">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#aab88715f3c94437ca7f3fcb1698c69de">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#ad8166350329db3e1f50954afbb311a35">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#accb56630df2f57400467d315c61dede6">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#ad0dd92f9da6c291c3bd57c0983940035">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a0f412b8f788ab7990e353d62ab7d9a16">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a8ba5a942bb61347851030d1eb6bbaa74">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
+<li>describe_callback_context()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5dfb7a2ce0008d41dee4aa596a4e1ce4">gridfire::solver::CVODESolverStrategy</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#ae09169769774f17df8701c42a64ed656">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>, <a class="el" href="class_py_dynamic_network_solver_strategy.html#a147a0a543268427a5930143902217ac3">PyDynamicNetworkSolverStrategy</a></li>
+<li>description&#160;:&#160;<a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html#aaf99ffdeb73f5e792e61c4cca68aa157">gridfire::trigger::TriggerResult</a></li>
 <li>df()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
-<li>dt&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a6a293628e61f241b9d335cd223da5f7c">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
+<li>dt&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a6442d15673e6385bb6fdd11e1179c487">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
 <li>dt0&#160;:&#160;<a class="el" href="structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a">gridfire::NetIn</a></li>
-<li>dydt&#160;:&#160;<a class="el" href="structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d">gridfire::StepDerivatives&lt; T &gt;</a></li>
+<li>dydt&#160;:&#160;<a class="el" href="structgridfire_1_1_step_derivatives.html#a1ae99ac1684d8df519f8d6af413d2cb1">gridfire::StepDerivatives&lt; T &gt;</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_e.html b/docs/html/functions_e.html
index a7b32d31..8747551d 100644
--- a/docs/html/functions_e.html
+++ b/docs/html/functions_e.html
@@ -102,18 +102,22 @@ $(function(){initNavTree('functions_e.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
 
 <h3><a id="index_e" name="index_e"></a>- e -</h3><ul>
-<li>EigenFunctor()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a1aa29df77925443796e1e59c1b7b7a60">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
-<li>end()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#af8d23557326e6c8499fa4919ac0bd972">gridfire::reaction::LogicalReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad19adbee44a71559a53785e3b1fc7e92">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>energy()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf">gridfire::exceptions::StaleEngineTrigger</a>, <a class="el" href="structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b">gridfire::NetIn</a>, <a class="el" href="structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6">gridfire::NetOut</a></li>
-<li>engine&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a53985d354dcaeda96dc39828c6c9d9d1">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
-<li>EngineError()&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa">gridfire::expectations::EngineError</a></li>
+<li>EigenFunctor()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a24463a5e83e096ef368878ad29fdafb6">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
+<li>electronMassG&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8998f5acb979463eeabb14da50fb6856">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>electronMassMeV&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a24d6517e15c177fb8ca72f08f8eaf509">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>end()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#aefaf6c4c32ae54a2882da0e031632a74">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987">gridfire::ReactionSet</a></li>
+<li>energy()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf">gridfire::exceptions::StaleEngineTrigger</a>, <a class="el" href="structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b">gridfire::NetIn</a>, <a class="el" href="structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6">gridfire::NetOut</a>, <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a1fb4ca773aaad8d1d958a3a0e82d8edd">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></li>
+<li>engine&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ac44d6bd0f4952d8bfdf487a09264872b">gridfire::solver::CVODESolverStrategy::CVODEUserData</a>, <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#af8c233f893bf740e81c5254d84534067">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
+<li>EngineError()&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#a574a18b105ee285f516db535e1e3bdfd">gridfire::expectations::EngineError</a></li>
 <li>EngineIndexError()&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html#ab44bba2a197d43319e65cd200cd347b0">gridfire::expectations::EngineIndexError</a></li>
-<li>equilibrateNetwork()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>evaluate()&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a888734a3cdde4259e921e2efece411ee">gridfire::approx8::Approx8Network</a>, <a class="el" href="classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c">gridfire::Network</a>, <a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a">gridfire::solver::DirectNetworkSolver</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>, <a class="el" href="class_py_dynamic_network_solver_strategy.html#a2095abb83ed6229ebb27b4883cec51c4">PyDynamicNetworkSolverStrategy</a>, <a class="el" href="class_py_partition_function.html#a83aca0bc261734b7d3df8269f730c69b">PyPartitionFunction</a></li>
+<li>equilibrateNetwork()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a2f0c45d4e2b2f9de5d961088f3ab0a9a">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>evaluate()&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a888734a3cdde4259e921e2efece411ee">gridfire::approx8::Approx8Network</a>, <a class="el" href="classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c">gridfire::Network</a>, <a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab8224d205ea3a28d9c723631c2f00b53">gridfire::solver::CVODESolverStrategy</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>, <a class="el" href="class_py_dynamic_network_solver_strategy.html#a2095abb83ed6229ebb27b4883cec51c4">PyDynamicNetworkSolverStrategy</a>, <a class="el" href="class_py_partition_function.html#a83aca0bc261734b7d3df8269f730c69b">PyPartitionFunction</a></li>
 <li>evaluateDerivative()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#ac8900afaa5edd24fcb8eaf19e7379183">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0eff10c7b134d9d4081ad72bbc785c5b">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a14009bdaca47f3eddf2c6c023845db5a">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aaa1e11579b44a88c5f18943cc303c4b4">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="class_py_partition_function.html#a260df9689bf698970ebf5104977a3dcf">PyPartitionFunction</a></li>
-<li>excess_energy()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5">gridfire::reaction::Reaction</a></li>
+<li>EveryNthTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69e5a3061926e1cd36fbd0a5285fa0a7">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>eVgRelation&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#af834029caff08f9d5f7ff3a817ade469">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>excess_energy()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0b30c49925823c87980b4fca17c8282e">gridfire::reaction::ReaclibReaction</a></li>
 <li>exportToCSV()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95">gridfire::GraphEngine</a></li>
-<li>exportToDot()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>exportToDot()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#adfa1e133c49c0ef78b374d37e90a3372">gridfire::MultiscalePartitioningEngineView</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_f.html b/docs/html/functions_f.html
index 8e0c11ee..86086943 100644
--- a/docs/html/functions_f.html
+++ b/docs/html/functions_f.html
@@ -104,12 +104,12 @@ $(function(){initNavTree('functions_f.html',''); initResizable(true); });
 <h3><a id="index_f" name="index_f"></a>- f -</h3><ul>
 <li>FailedToPartitionEngineError()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a9b9e8752798876d34a444f61fc2f509a">gridfire::exceptions::FailedToPartitionEngineError</a></li>
 <li>FileDefinedEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd">gridfire::FileDefinedEngineView</a></li>
-<li>finalizeActiveSet()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aa79fb382c98461b02a2c30668491e6c5">gridfire::AdaptiveEngineView</a></li>
+<li>finalizeActiveSet()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a7b8b3a786b973e4383e721358e61b7ed">gridfire::AdaptiveEngineView</a></li>
 <li>find()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a12058e121981294f447e69a467fd84cd">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
 <li>findReachableSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b">gridfire::AdaptiveEngineView</a></li>
 <li>flowRate&#160;:&#160;<a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a6c2e9087f6c8af5d89a5f0de7bd4a5b4">gridfire::AdaptiveEngineView::ReactionFlow</a></li>
-<li>for_sparse_jac()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4">gridfire::GraphEngine::AtomicReverseRate</a></li>
-<li>forward()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0">gridfire::GraphEngine::AtomicReverseRate</a></li>
+<li>for_sparse_jac()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4">gridfire::GraphEngine::AtomicReverseRate</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a976a2ef2e58439429c1a6e94c27f4662">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></li>
+<li>forward()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0">gridfire::GraphEngine::AtomicReverseRate</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ab4f12e8da29d4d158fb0adf2db31b4bb">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></li>
 <li>FRONT&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_func.html b/docs/html/functions_func.html
index f2735a3e..f43f3c06 100644
--- a/docs/html/functions_func.html
+++ b/docs/html/functions_func.html
@@ -103,11 +103,14 @@ $(function(){initNavTree('functions_func.html',''); initResizable(true); });
 
 <h3><a id="index_a" name="index_a"></a>- a -</h3><ul>
 <li>AdaptiveEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455">gridfire::AdaptiveEngineView</a></li>
-<li>add_reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#a14a24cb8ea25a1514134acc51197f1de">gridfire::reaction::LogicalReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a339dbbf883b6ae20e33d9782d8376bcf">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>all_species()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224">gridfire::reaction::Reaction</a></li>
-<li>analyzeTimescalePoolConnectivity()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#af13e764c118a6cc51847384e9c70e05b">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>add_reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a69508797ca0793f6d3f58de4e0b97667">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1">gridfire::ReactionSet</a></li>
+<li>all_species()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a6e567323ca019eadcbb9dbb814ebeb0b">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#ace0b2bee91702e0ab97b6fc74999d6f0">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a445777acbbee2032d83a256181a90e3c">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa13cd9097229fcc99128d9286b8f17e6">gridfire::reaction::Reaction</a></li>
+<li>analyzeTimescalePoolConnectivity()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a05e45017bbb772c586f483bd527004ee">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>AndTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a969738baf0bda97664715937d4bc403e">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></li>
 <li>Approx8Network()&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a65066078081c544be4e56e25eb407c8b">gridfire::approx8::Approx8Network</a></li>
 <li>AtomicReverseRate()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf">gridfire::GraphEngine::AtomicReverseRate</a></li>
+<li>AtomicWeakRate()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a46d76ca50ee00198a9f4a873c6ceb874">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></li>
+<li>available_isotopes()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a976f84b6f6e33b5f3dd733a771afd7ba">gridfire::rates::weak::WeakRateInterpolator</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_func.js b/docs/html/functions_func.js
index 7c95a624..2ccff10e 100644
--- a/docs/html/functions_func.js
+++ b/docs/html/functions_func.js
@@ -9,7 +9,6 @@ var functions_func =
     [ "g", "functions_func_g.html", null ],
     [ "h", "functions_func_h.html", null ],
     [ "i", "functions_func_i.html", null ],
-    [ "j", "functions_func_j.html", null ],
     [ "l", "functions_func_l.html", null ],
     [ "m", "functions_func_m.html", null ],
     [ "n", "functions_func_n.html", null ],
diff --git a/docs/html/functions_func_b.html b/docs/html/functions_func_b.html
index 1bc831a9..a4bba5f4 100644
--- a/docs/html/functions_func_b.html
+++ b/docs/html/functions_func_b.html
@@ -102,9 +102,9 @@ $(function(){initNavTree('functions_func_b.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_b" name="index_b"></a>- b -</h3><ul>
-<li>begin()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#a4ae3806e5e1a802b86a6de292d043476">gridfire::reaction::LogicalReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a87257704009fcd57b553f86cdaacb597">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
+<li>begin()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a1353d7d2208497b38799bf69f574c275">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613">gridfire::ReactionSet</a></li>
 <li>bin()&#160;:&#160;<a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3">gridfire::QSECacheKey</a></li>
-<li>buildConnectivityGraph()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aae0865e361dfeb23984d70409fdd9f39">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>buildConnectivityGraph()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a5d1c11f3c0883385833462dd088f6f89">gridfire::MultiscalePartitioningEngineView</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_func_c.html b/docs/html/functions_func_c.html
index b0e12a4f..c0f4714b 100644
--- a/docs/html/functions_func_c.html
+++ b/docs/html/functions_func_c.html
@@ -102,37 +102,45 @@ $(function(){initNavTree('functions_func_c.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_c" name="index_c"></a>- c -</h3><ul>
-<li>calculate_forward_rate_log_derivative()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#aa4b8d0d30459f360ff6e29d848e943d5">gridfire::reaction::LogicalReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061">gridfire::reaction::Reaction</a></li>
-<li>calculate_rate()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#a1d2fb3b6a6a1860ace98b32447d1dd1b">gridfire::reaction::LogicalReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec">gridfire::reaction::Reaction</a></li>
-<li>calculateAllDerivatives()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#af41df9ce979b6410e12642cb093916c9">gridfire::GraphEngine</a></li>
-<li>calculateAllDerivativesUsingPrecomputation()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a97f98706b51fbe0d167ed81ffe58c438">gridfire::GraphEngine</a></li>
-<li>calculateAllReactionFlows()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#abdbaf4b87629efe43ac1255dad424c0c">gridfire::AdaptiveEngineView</a></li>
-<li>calculateFactors_impl()&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a2695206d46b9d2c2503f8e58c44df88f">gridfire::screening::WeakScreeningModel</a></li>
-<li>calculateMolarReactionFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a">PyDynamicEngine</a></li>
-<li>calculateReverseMolarReactionFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a17774cd9ffcf1ba94019df766a0984a0">gridfire::GraphEngine</a></li>
-<li>calculateReverseRate()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28">gridfire::GraphEngine</a></li>
+<li>calculate_energy_generation_rate()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a091d6d4aa59f788c97f9b5481f46f1b5">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">gridfire::reaction::Reaction</a></li>
+<li>calculate_log_rate_partial_deriv_wrt_T9()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac2d5366d4b5766413db34558dbce3cb3">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#aec9859c030364e1d4a740197514731db">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a9b1363314159eaf9c56aaa233f5eebd6">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa2b615e764bb005e526ca9327319c735">gridfire::reaction::Reaction</a></li>
+<li>calculate_rate()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a05df0657efed55eb4262c7834d81400a">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#abb3e2b9c5404f45fc5656eeac1d06a6c">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ac21a726884930e6a00792e7c3eb43f42">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#acd16b1daf13456b3523362a37b1bf9b0">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a83c121480533593adfd68c4a67a649f1">gridfire::reaction::Reaction</a></li>
+<li>calculate_rhs()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a38e0f02ba54e217e9638260d9651b1c3">gridfire::solver::CVODESolverStrategy</a></li>
+<li>calculateAllDerivatives()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a8873331f5ae40a3f640dedbbed685ed9">gridfire::GraphEngine</a></li>
+<li>calculateAllDerivativesUsingPrecomputation()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#aef12443d7980301d8bb89f4ba4890450">gridfire::GraphEngine</a></li>
+<li>calculateAllReactionFlows()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ab5397d217039f096acededd4d2779780">gridfire::AdaptiveEngineView</a></li>
+<li>calculateEpsDerivatives()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a5d1b50afd2fba6af75e976a4f9c9dcbc">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a06aca977aafb4784fd167acb8c02dda2">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a264bd5a8891c8c5f0dff32867effe547">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ae0c9159cc3467fd85d1a5895f1786c47">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a99f9116d5a18afcbf0e808ef111d1be8">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>calculateFactors_impl()&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a48a3392d735c61b15b4855c823acfada">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html#a794b7781f07343383da3894208cfbfa9">gridfire::screening::IntermediateScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#aa9f95ba8c052dacb72295775516b7e5f">gridfire::screening::WeakScreeningModel</a></li>
+<li>calculateMolarReactionFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a3c1e27b45051c4ba481a2b87513982ed">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a74298377d0432ae3d577be0e9e6052b3">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a39cf5b738eea0a275bf8c0eb5789fab3">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a1675859971f0bd2db0650f8da54ed7eb">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a87687a960f263a4e1bc035e4d0a345db">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a">PyDynamicEngine</a></li>
+<li>calculateReverseMolarReactionFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a972d0705351167dc889a2f6c442e7a93">gridfire::GraphEngine</a></li>
+<li>calculateReverseRate()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#accf01734524a706ad03c9b9898af54b3">gridfire::GraphEngine</a></li>
 <li>calculateReverseRateTwoBody()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755">gridfire::GraphEngine</a></li>
-<li>calculateReverseRateTwoBodyDerivative()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7">gridfire::GraphEngine</a></li>
-<li>calculateRHSAndEnergy()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb">gridfire::Engine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a">PyDynamicEngine</a>, <a class="el" href="class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d">PyEngine</a></li>
-<li>calculateScreeningFactors()&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde">gridfire::screening::ScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c">gridfire::screening::WeakScreeningModel</a>, <a class="el" href="class_py_screening.html#a2b8756c197eb89e77cb6dd231c979315">PyScreening</a></li>
-<li>chapter()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629">gridfire::reaction::Reaction</a></li>
-<li>clear()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a05f71d318564d880079fd6c96d59ae21">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>clone()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="class_py_partition_function.html#af918b357e38fb82499ad53584557c43d">PyPartitionFunction</a></li>
+<li>calculateReverseRateTwoBodyDerivative()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a9340db538a507b96e186b60ba0450205">gridfire::GraphEngine</a></li>
+<li>calculateRHSAndEnergy()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac5545d546166de94514871d7ad7b8669">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#af273b29d7700cdc34da6e2712fffc5c2">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740">gridfire::Engine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a7acc98647427981a9602d251c9288012">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a5c1ab19bc3394a5d29241ef02073c4cb">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a">PyDynamicEngine</a>, <a class="el" href="class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d">PyEngine</a></li>
+<li>calculateScreeningFactors()&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ad252ce1de82401bab24747aabf0c8a3a">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html#a86a218ce82306ed582296cbeb3de0250">gridfire::screening::IntermediateScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#ab08c4490f9da18254a7c6f29be1f62ce">gridfire::screening::ScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a6a215d082b0d05126fb2b19fd1983446">gridfire::screening::WeakScreeningModel</a>, <a class="el" href="class_py_screening.html#aa67b5f0528006d9c742033b8c5ab3a05">PyScreening</a></li>
+<li>chapter()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#abe189c43e4d509d9d05dd205861ceddc">gridfire::reaction::ReaclibReaction</a></li>
+<li>check()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#aaefdfa86856f9f7839b6a7fdffa4a579">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69fbb099f8d13d39602f58fa8aa8e7f2">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#ae453a72df20fdd416443ef7867f86b92">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#ac8be54d91e77ed16ae3cca2417d82e0a">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3855b15459217383647ecdf12bc35775">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a50df7fefee167390522aa258fa6ee960">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a04598611b0807cad395bdd2fbc41a6c2">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
+<li>cleanup_cvode_resources()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a7f6786780137de1a136e081c537a9667">gridfire::solver::CVODESolverStrategy</a></li>
+<li>clear()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300">gridfire::ReactionSet</a></li>
+<li>clone()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac10e1451d20876f6eab199e127f213c7">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a588a8c19970463d97f5aa333fcd312dc">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad113b9cb64c449f9449c4cce4fa64076">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a54fde02e7010e806136f976ab64b1740">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab95ce7fb022a9432bdc77f14679221ee">gridfire::reaction::Reaction</a>, <a class="el" href="class_py_partition_function.html#af918b357e38fb82499ad53584557c43d">PyPartitionFunction</a></li>
 <li>collect()&#160;:&#160;<a class="el" href="classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e">gridfire::DefinedEngineView</a></li>
 <li>collectAtomicReverseRateAtomicBases()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746">gridfire::GraphEngine</a></li>
 <li>collectNetworkSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa">gridfire::GraphEngine</a></li>
+<li>Column()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_column.html#a7d7e4f4cf6f8e03725afeb9f664321b8">gridfire::utils::Column&lt; T &gt;</a></li>
 <li>CompositePartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#ad80743933712de627c6a69d06d42ceb5">gridfire::partition::CompositePartitionFunction</a></li>
-<li>compute_and_cache()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
-<li>constructCandidateGroups()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ac206840057bac65b7f7738e6dfd1047a">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>constructCandidateGroups()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aaabaae8e33ca8a05a2aa1f374e792795">gridfire::MultiscalePartitioningEngineView</a></li>
 <li>constructPrimingReactionSet()&#160;:&#160;<a class="el" href="classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f">gridfire::NetworkPrimingEngineView</a></li>
 <li>constructReactionIndexMap()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68">gridfire::DefinedEngineView</a></li>
 <li>constructSpeciesIndexMap()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985">gridfire::DefinedEngineView</a></li>
-<li>contains()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a7777ecd0f594fdf66ce57d22610fad3c">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>contains_product()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a443ec5d7138764b32975232e13071ccf">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>contains_reactant()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac42606350d7557106f7954b1f114c128">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>contains_species()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad870856d206d93f27125c88d44ff9e34">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
+<li>contains()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a745b161968f37873b5d40fe6bf9d2118">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#adaeb5d72faf7d55d4e26f6e1fcba21c1">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a171b690e1abaf23f11a94c39e9f8c944">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a768db057d358240d4825c21869af0792">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387">gridfire::ReactionSet</a></li>
+<li>contains_product()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a957b5bfe70e536290ef677a7c5b6643f">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a5a17ca61d069749960e5a83e58c0b8a1">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a4e4811436d09afaa4a14c51d9af71f88">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a2708d2e8f42159df6605a5948b13c4c5">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e">gridfire::ReactionSet</a></li>
+<li>contains_reactant()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a98095e6536d9a6434c5955f4c169d505">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#afca3afba45a3db79980c8fe18c87c750">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a65a12e5f6180873866cfaaf130fd1156">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab28bf4f9417ecabcc8350bae449fedd5">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2">gridfire::ReactionSet</a></li>
+<li>contains_species()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a">gridfire::ReactionSet</a></li>
 <li>convert_netIn()&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a56426da6f1af7eb8a6d1cc70bc8e742a">gridfire::approx8::Approx8Network</a></li>
-<li>cullReactionsByFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08">gridfire::AdaptiveEngineView</a></li>
+<li>cullReactionsByFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a95fbfb7f2bdbf80195f1ea0aff8d62fb">gridfire::AdaptiveEngineView</a></li>
+<li>cvode_jac_wrapper()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ae13fc9c21f595edbee1c9b7debaa61b3">gridfire::solver::CVODESolverStrategy</a></li>
+<li>cvode_rhs_wrapper()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a14c620ef75749c8ef3dfdb84132e5620">gridfire::solver::CVODESolverStrategy</a></li>
+<li>CVODESolverStrategy()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a924a541da3b205818f90b50d675631c0">gridfire::solver::CVODESolverStrategy</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_func_d.html b/docs/html/functions_func_d.html
index 72390d69..cb6abebc 100644
--- a/docs/html/functions_func_d.html
+++ b/docs/html/functions_func_d.html
@@ -104,8 +104,8 @@ $(function(){initNavTree('functions_func_d.html',''); initResizable(true); });
 <h3><a id="index_d" name="index_d"></a>- d -</h3><ul>
 <li>DefinedEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92">gridfire::DefinedEngineView</a></li>
 <li>density()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc">gridfire::exceptions::StaleEngineTrigger</a></li>
-<li>describe()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ab032139a719e551f888ae012ef8018ee">gridfire::solver::DirectNetworkSolver::TimestepContext</a>, <a class="el" href="structgridfire_1_1solver_1_1_solver_context_base.html#a9cbef3cabc8524e542613ee50d8860c6">gridfire::solver::SolverContextBase</a></li>
-<li>describe_callback_context()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a053c9c1343af8f30ced69707e1d899e3">gridfire::solver::DirectNetworkSolver</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#ae09169769774f17df8701c42a64ed656">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>, <a class="el" href="class_py_dynamic_network_solver_strategy.html#a147a0a543268427a5930143902217ac3">PyDynamicNetworkSolverStrategy</a></li>
+<li>describe()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#ae3c6320ce7a8f41c9ae36c42d62b4204">gridfire::solver::CVODESolverStrategy::TimestepContext</a>, <a class="el" href="structgridfire_1_1solver_1_1_solver_context_base.html#a9cbef3cabc8524e542613ee50d8860c6">gridfire::solver::SolverContextBase</a>, <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a2dcd635c6bdbcfe517adca6e2bd5c408">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#aab88715f3c94437ca7f3fcb1698c69de">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#ad8166350329db3e1f50954afbb311a35">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#accb56630df2f57400467d315c61dede6">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#ad0dd92f9da6c291c3bd57c0983940035">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a0f412b8f788ab7990e353d62ab7d9a16">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a8ba5a942bb61347851030d1eb6bbaa74">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
+<li>describe_callback_context()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5dfb7a2ce0008d41dee4aa596a4e1ce4">gridfire::solver::CVODESolverStrategy</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#ae09169769774f17df8701c42a64ed656">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>, <a class="el" href="class_py_dynamic_network_solver_strategy.html#a147a0a543268427a5930143902217ac3">PyDynamicNetworkSolverStrategy</a></li>
 <li>df()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_func_e.html b/docs/html/functions_func_e.html
index 4b2412d4..d8672913 100644
--- a/docs/html/functions_func_e.html
+++ b/docs/html/functions_func_e.html
@@ -102,17 +102,18 @@ $(function(){initNavTree('functions_func_e.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_e" name="index_e"></a>- e -</h3><ul>
-<li>EigenFunctor()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a1aa29df77925443796e1e59c1b7b7a60">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
-<li>end()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#af8d23557326e6c8499fa4919ac0bd972">gridfire::reaction::LogicalReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad19adbee44a71559a53785e3b1fc7e92">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
+<li>EigenFunctor()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a24463a5e83e096ef368878ad29fdafb6">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
+<li>end()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#aefaf6c4c32ae54a2882da0e031632a74">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987">gridfire::ReactionSet</a></li>
 <li>energy()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf">gridfire::exceptions::StaleEngineTrigger</a></li>
-<li>EngineError()&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa">gridfire::expectations::EngineError</a></li>
+<li>EngineError()&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#a574a18b105ee285f516db535e1e3bdfd">gridfire::expectations::EngineError</a></li>
 <li>EngineIndexError()&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html#ab44bba2a197d43319e65cd200cd347b0">gridfire::expectations::EngineIndexError</a></li>
-<li>equilibrateNetwork()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>evaluate()&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a888734a3cdde4259e921e2efece411ee">gridfire::approx8::Approx8Network</a>, <a class="el" href="classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c">gridfire::Network</a>, <a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a">gridfire::solver::DirectNetworkSolver</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>, <a class="el" href="class_py_dynamic_network_solver_strategy.html#a2095abb83ed6229ebb27b4883cec51c4">PyDynamicNetworkSolverStrategy</a>, <a class="el" href="class_py_partition_function.html#a83aca0bc261734b7d3df8269f730c69b">PyPartitionFunction</a></li>
+<li>equilibrateNetwork()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a2f0c45d4e2b2f9de5d961088f3ab0a9a">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>evaluate()&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a888734a3cdde4259e921e2efece411ee">gridfire::approx8::Approx8Network</a>, <a class="el" href="classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c">gridfire::Network</a>, <a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab8224d205ea3a28d9c723631c2f00b53">gridfire::solver::CVODESolverStrategy</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>, <a class="el" href="class_py_dynamic_network_solver_strategy.html#a2095abb83ed6229ebb27b4883cec51c4">PyDynamicNetworkSolverStrategy</a>, <a class="el" href="class_py_partition_function.html#a83aca0bc261734b7d3df8269f730c69b">PyPartitionFunction</a></li>
 <li>evaluateDerivative()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#ac8900afaa5edd24fcb8eaf19e7379183">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0eff10c7b134d9d4081ad72bbc785c5b">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a14009bdaca47f3eddf2c6c023845db5a">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aaa1e11579b44a88c5f18943cc303c4b4">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="class_py_partition_function.html#a260df9689bf698970ebf5104977a3dcf">PyPartitionFunction</a></li>
-<li>excess_energy()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5">gridfire::reaction::Reaction</a></li>
+<li>EveryNthTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69e5a3061926e1cd36fbd0a5285fa0a7">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>excess_energy()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0b30c49925823c87980b4fca17c8282e">gridfire::reaction::ReaclibReaction</a></li>
 <li>exportToCSV()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95">gridfire::GraphEngine</a></li>
-<li>exportToDot()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>exportToDot()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#adfa1e133c49c0ef78b374d37e90a3372">gridfire::MultiscalePartitioningEngineView</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_func_f.html b/docs/html/functions_func_f.html
index c506b0f9..f435fbec 100644
--- a/docs/html/functions_func_f.html
+++ b/docs/html/functions_func_f.html
@@ -104,11 +104,11 @@ $(function(){initNavTree('functions_func_f.html',''); initResizable(true); });
 <h3><a id="index_f" name="index_f"></a>- f -</h3><ul>
 <li>FailedToPartitionEngineError()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a9b9e8752798876d34a444f61fc2f509a">gridfire::exceptions::FailedToPartitionEngineError</a></li>
 <li>FileDefinedEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd">gridfire::FileDefinedEngineView</a></li>
-<li>finalizeActiveSet()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aa79fb382c98461b02a2c30668491e6c5">gridfire::AdaptiveEngineView</a></li>
+<li>finalizeActiveSet()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a7b8b3a786b973e4383e721358e61b7ed">gridfire::AdaptiveEngineView</a></li>
 <li>find()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a12058e121981294f447e69a467fd84cd">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
 <li>findReachableSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b">gridfire::AdaptiveEngineView</a></li>
-<li>for_sparse_jac()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4">gridfire::GraphEngine::AtomicReverseRate</a></li>
-<li>forward()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0">gridfire::GraphEngine::AtomicReverseRate</a></li>
+<li>for_sparse_jac()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4">gridfire::GraphEngine::AtomicReverseRate</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a976a2ef2e58439429c1a6e94c27f4662">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></li>
+<li>forward()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0">gridfire::GraphEngine::AtomicReverseRate</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ab4f12e8da29d4d158fb0adf2db31b4bb">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_func_g.html b/docs/html/functions_func_g.html
index 8ff57654..55261f96 100644
--- a/docs/html/functions_func_g.html
+++ b/docs/html/functions_func_g.html
@@ -102,30 +102,41 @@ $(function(){initNavTree('functions_func_g.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_g" name="index_g"></a>- g -</h3><ul>
-<li>generateJacobianMatrix()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a03fc187d3d306b9058103b9522cbbaeb">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#acdf5ad8765290ea2b78170235aea391d">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d">PyDynamicEngine</a></li>
+<li>generateJacobianMatrix()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a8da7664cf483cba7f979f855a74c3559">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ab80eadd713a40e9263e5231737e956d0">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a21d15531309456ee83f7675251e7a1bf">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ae11f6267077025ca342e2e263ad87e5e">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ab9f71bc9a1c0f98ec9cc1c7da00fd975">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d">PyDynamicEngine</a></li>
 <li>generateStoichiometryMatrix()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9">PyDynamicEngine</a></li>
+<li>get_all_reactions()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a9ab9f6f64455eb46172ebda5e8cc3ec5">gridfire::rates::weak::WeakReactionMap</a></li>
 <li>get_interpolation_points()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3baed110ab1b12e22071dc2d92c55db9">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
+<li>get_log_neutrino_loss_from_payload()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a7f0d21c80fbbf94ead613e678d44b835">gridfire::rates::weak::WeakReaction</a></li>
+<li>get_log_rate_from_payload()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a14555633289fc3822e927afca7401e49">gridfire::rates::weak::WeakReaction</a></li>
+<li>get_rate_derivatives()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a48cec4c8f1e117f73d7e88c3597b4d16">gridfire::rates::weak::WeakRateInterpolator</a></li>
+<li>get_rates()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ae36a65c29c34b004111d266dc668107b">gridfire::rates::weak::WeakRateInterpolator</a></li>
+<li>get_species_reactions()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a290da6766a6d3094a5aae8b7cbcd0d70">gridfire::rates::weak::WeakReactionMap</a></li>
+<li>get_stdout_logging_enabled()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a87b7b39e2a15cc30b118c8e6fda9a1a6">gridfire::solver::CVODESolverStrategy</a></li>
 <li>getBaseEngine()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6">gridfire::EngineView&lt; EngineT &gt;</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine_view.html#a51680b135cfc3eea40daf9ef5aa903e0">PyDynamicEngineView</a>, <a class="el" href="class_py_engine_view.html#a3cd83dc57b521c65a14edf70357a8845">PyEngineView</a></li>
+<li>getCellData()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_column.html#a5bd0ad730a684e1a8b583c5c27cca6e8">gridfire::utils::Column&lt; T &gt;</a>, <a class="el" href="classgridfire_1_1utils_1_1_column_base.html#a5e07c8e33c96ee8095ebefbf9b75cb36">gridfire::utils::ColumnBase</a></li>
 <li>getDepth()&#160;:&#160;<a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4">gridfire::GraphEngine</a>, <a class="el" href="class_py_dynamic_engine.html#adba68716d832b6100e08d32fbc36f13c">PyDynamicEngine</a></li>
 <li>getDynamicSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888">gridfire::MultiscalePartitioningEngineView</a></li>
 <li>getFastSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e">gridfire::MultiscalePartitioningEngineView</a></li>
 <li>getFormat()&#160;:&#160;<a class="el" href="classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118">gridfire::Network</a></li>
-<li>getJacobianMatrixEntry()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ac961484383e86d9712a424728e068633">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159">PyDynamicEngine</a></li>
+<li>getHeader()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_column.html#ad6a4f9aee1321e90896e5f4583d7311f">gridfire::utils::Column&lt; T &gt;</a>, <a class="el" href="classgridfire_1_1utils_1_1_column_base.html#a4dd5f1409d3190eab9ba07eb6e611248">gridfire::utils::ColumnBase</a></li>
+<li>getJacobianMatrixEntry()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#adf3b8a5734983509ca02b7a1a480119f">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#aa49532266ff959ac66f501336f102ce8">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a88dbf350dc0ea3e2b64d825f489e0d60">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a8ab5308629b8707922e5954776254aa6">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a586da5402750151fee5db2666785b6e4">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159">PyDynamicEngine</a></li>
 <li>getMolarAbundance()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea">gridfire::exceptions::StaleEngineTrigger</a></li>
 <li>getNetReactionStoichiometry()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9">gridfire::GraphEngine</a></li>
 <li>getNetworkFile()&#160;:&#160;<a class="el" href="classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718">gridfire::FileDefinedEngineView</a></li>
-<li>getNetworkReactions()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ad751f2c1306895ee74a61f2071ca96eb">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a5988cfba247631ba6c00795cafda9a38">PyDynamicEngine</a></li>
+<li>getNetworkReactions()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a3247c1e6a76de5622223ee7b5ca3452a">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a5f9db5a9287aa03b2fa4d516e9a576b6">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#af496e04f7be9a0a51ac65dc95f901ffe">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a3b7f3ba85821165f58f168bc68f86b2d">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a253e51d6dc7226a863a123683049af61">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a1d5143640666631501cf229bc491516e">PyDynamicEngine</a></li>
 <li>getNetworkSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3">gridfire::Engine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d">PyDynamicEngine</a>, <a class="el" href="class_py_engine.html#a2d240423899e039c2ca688e96f8af1f2">PyEngine</a></li>
 <li>getParser()&#160;:&#160;<a class="el" href="classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f">gridfire::FileDefinedEngineView</a></li>
 <li>getPartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44">gridfire::GraphEngine</a></li>
-<li>getReactionSetSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a1596de3439735a45ac344fa85ace6c82">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
+<li>getReactionSetSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b">gridfire::ReactionSet</a></li>
+<li>getRowCount()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_column.html#a7ff9084a0486fb8b08edfe866480568b">gridfire::utils::Column&lt; T &gt;</a>, <a class="el" href="classgridfire_1_1utils_1_1_column_base.html#ab6e4cb14c8a0ad7b6b9ad0fbde766cba">gridfire::utils::ColumnBase</a></li>
 <li>getScreeningModel()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5">PyDynamicEngine</a></li>
-<li>getSpeciesDestructionTimescales()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a522e78bce9ff062939572248d57f8cea">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#aef8f6bde24d27345067b71084330c7da">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aa38c367ef3c74d012ccd10521cd5a727">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3">PyDynamicEngine</a></li>
-<li>getSpeciesIndex()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a9055feb245524a5a9549ace935f059ff">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a914f6abc61805cddaebcb8f3cf470dda">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a91d32b7197fcb27ee697d5bfde960f3f">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a2ee1d745c1c21b9fcb652c96c42f1091">PyDynamicEngine</a></li>
-<li>getSpeciesTimescales()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a560612347bbd5b7b380e990624d01105">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22">PyDynamicEngine</a></li>
+<li>getSpeciesDestructionTimescales()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aa861db5f6fc4e85fb51f524e4e1367c6">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a7bcf169ba1e12e3356d4bcc27c3fc554">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a25c040d3078f6ff2ef38f733eb68f1fa">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a47df5a9c448dd1ce8654df819a6cc8ff">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a14b0c7ec882b2ad2370f7aa729b9f9">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3">PyDynamicEngine</a></li>
+<li>getSpeciesIndex()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#abb811382522c31f6456787edd4f59ace">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#af3b355ffcda6a8f2841184cc56e3761a">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a8f66fb76c9f983ee93bf8b95cdc85596">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a9e426e6c178dd80bd58090489d3b2be9">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a8db21995e6878f4043f3a5a45bf36d5e">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a95d10a7b240d543a1bc6c67ddf2dc8e0">PyDynamicEngine</a></li>
+<li>getSpeciesTimescales()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a57a218c5a145f589531777c8615b7408">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a18f46d92ea7e04068ad9e7af4ed605a8">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#ae7114f5ebc6667b5e5971c0450ed03d9">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a7dde968244f3c4934c7738445c709232">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aea2c3d2ae6ddf77bd4a9b07b86f3306b">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22">PyDynamicEngine</a></li>
 <li>getState()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5">gridfire::exceptions::StaleEngineTrigger</a></li>
-<li>getStoichiometryMatrixEntry()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a510b920dea726aef859ac1f6d051807e">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83">PyDynamicEngine</a></li>
-<li>GraphEngine()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#afad967546b611d9c005268760feb75d5">gridfire::GraphEngine</a></li>
+<li>getStoichiometryMatrixEntry()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#abe2ca6426e10cc6a10090eecf7098dbe">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#af1843cfd2a95bfa46ab40d4c4de11ef9">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad19c8451b6f624e2938f771cc067d5c1">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ad90a2d770ebf098f0d6d5f5339961e95">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7140384baaaa0bd05ca448a0d8fec471">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83">PyDynamicEngine</a></li>
+<li>getWeakRateInterpolator()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aefc75b3149bee2da878177279ad375da">gridfire::rates::weak::WeakReaction</a></li>
+<li>GraphEngine()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a38aaafb1d9a6548bc8e8cb672417bbbe">gridfire::GraphEngine</a></li>
 <li>GroundStatePartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a8afa2aee993eb3ed8d01c887d39b57eb">gridfire::partition::GroundStatePartitionFunction</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_func_h.html b/docs/html/functions_func_h.html
index b27eb296..b7bb363c 100644
--- a/docs/html/functions_func_h.html
+++ b/docs/html/functions_func_h.html
@@ -102,7 +102,7 @@ $(function(){initNavTree('functions_func_h.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_h" name="index_h"></a>- h -</h3><ul>
-<li>hash()&#160;:&#160;<a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d">gridfire::QSECacheKey</a>, <a class="el" href="classgridfire_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a272800016c83f259f5c6a92dc797353c">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
+<li>hash()&#160;:&#160;<a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d">gridfire::QSECacheKey</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad2ba6b584cb2df7c15633fca81ce6af1">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a41b1c16f499c9255251ed43725cf698c">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a661dd461e51c37133f7f9931389fd3cc">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7ba8c18cd5445aa3499a6fd351183f7a">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99">gridfire::ReactionSet</a></li>
 <li>hit()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5eb642e161ffb5500ccc1e412849ee5e">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
 <li>hits()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#aaf8b925a169a732c14f4451a33451f51">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
 </ul>
diff --git a/docs/html/functions_func_i.html b/docs/html/functions_func_i.html
index 326306e9..306321ad 100644
--- a/docs/html/functions_func_i.html
+++ b/docs/html/functions_func_i.html
@@ -102,11 +102,12 @@ $(function(){initNavTree('functions_func_i.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_i" name="index_i"></a>- i -</h3><ul>
-<li>id()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905">gridfire::reaction::Reaction</a></li>
-<li>identifyMeanSlowestPool()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a54ca8004fbd8d6d3ea6f67efeb5dbc8d">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>inputs()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a0adf1074b5e6ba448cedff7563c450d0">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
+<li>id()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad01a15d95878c9edbf57cd9045c4413b">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a768329002a4f0b8604b1aa51d56b5d1b">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a06312f834439ccf93012dea53cab47ce">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a94b92308b9619ec20c690e55157786ba">gridfire::reaction::Reaction</a></li>
+<li>identifyMeanSlowestPool()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a70f4a0c4123b7f78305f64eb11beeeeb">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>initialize_cvode_integration_resources()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afc6c55237df4af240c4c842305085d91">gridfire::solver::CVODESolverStrategy</a></li>
+<li>inputs()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad19c39ced17e400af9f46478546a8fa1">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
 <li>involvesSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b">gridfire::GraphEngine</a></li>
-<li>is_reverse()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba">gridfire::reaction::Reaction</a></li>
+<li>is_reverse()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90b62d922d91832859516450cf8e3876">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a640b0bdbed9ed7c2a2e9880ddbcafc1d">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a181b2c75af1f2701c43594c5bb2bac2d">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a3906a668410e02239f9031b5fc580214">gridfire::reaction::Reaction</a></li>
 <li>isPrecomputationEnabled()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f">gridfire::GraphEngine</a></li>
 <li>isStale()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14">PyDynamicEngine</a></li>
 <li>isStiff()&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a5b17b2831389829533385900ce19a37a">gridfire::approx8::Approx8Network</a>, <a class="el" href="classgridfire_1_1_network.html#ae93ad65deba79def4b77d420e7affa0b">gridfire::Network</a></li>
diff --git a/docs/html/functions_func_l.html b/docs/html/functions_func_l.html
index 85cc016f..a51262ea 100644
--- a/docs/html/functions_func_l.html
+++ b/docs/html/functions_func_l.html
@@ -102,7 +102,9 @@ $(function(){initNavTree('functions_func_l.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_l" name="index_l"></a>- l -</h3><ul>
-<li>LogicalReaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#a6965906ea33ebd0d615811219d9e9537">gridfire::reaction::LogicalReaction</a></li>
+<li>log_step_diagnostics()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a53c14f504e5b7827b4bab4a0a7a13341">gridfire::solver::CVODESolverStrategy</a></li>
+<li>log_time()&#160;:&#160;<a class="el" href="class_solver_plugin_interface.html#a493a30c0ae4b2e1a89b7d03c02c0041c">SolverPluginInterface</a></li>
+<li>LogicalReaclibReaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a0ff112dca1f88070effb6700429b42b4">gridfire::reaction::LogicalReaclibReaction</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_func_m.html b/docs/html/functions_func_m.html
index 01958d17..93a584e7 100644
--- a/docs/html/functions_func_m.html
+++ b/docs/html/functions_func_m.html
@@ -102,7 +102,7 @@ $(function(){initNavTree('functions_func_m.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_m" name="index_m"></a>- m -</h3><ul>
-<li>make_key()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a99c80e2f4ba36e88e08e2abd650a08fb">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
+<li>make_key()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0e75ec9b97529783e07953aaf7d70f68">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
 <li>mapCulledToFull()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1">gridfire::AdaptiveEngineView</a></li>
 <li>mapCulledToFullReactionIndex()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101">gridfire::AdaptiveEngineView</a></li>
 <li>mapCulledToFullSpeciesIndex()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8">gridfire::AdaptiveEngineView</a></li>
diff --git a/docs/html/functions_func_n.html b/docs/html/functions_func_n.html
index 6486c804..5d1ae111 100644
--- a/docs/html/functions_func_n.html
+++ b/docs/html/functions_func_n.html
@@ -102,12 +102,16 @@ $(function(){initNavTree('functions_func_n.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_n" name="index_n"></a>- n -</h3><ul>
+<li>name()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#ab78539e5cd88194ab9e98434793eae3f">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a4a834d24286f9204995bf78fb69f35dc">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#acc3bd2938f7746997fb1d255681d8b20">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a062af4f567dc48c088f1fcfb64cc79ec">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a594893c029f044be3119118808470f7a">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a87fc9fe6bd8762f148c858452ec30043">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a290e5643eea08726d2fd44a1cd5617d0">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
 <li>Network()&#160;:&#160;<a class="el" href="classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55">gridfire::Network</a></li>
 <li>NetworkPrimingEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177">gridfire::NetworkPrimingEngineView</a></li>
 <li>NetworkResizedError()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html#a80c0adb088e8083309591d24051b056b">gridfire::exceptions::NetworkResizedError</a></li>
 <li>NetworkSolverStrategy()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></li>
-<li>num_species()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97">gridfire::reaction::Reaction</a></li>
+<li>NotTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a4828599aae5ff37f4c82e51fe192bed3">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>num_species()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1210917ca1727ea474bb606cf8279edb">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a348aae35a6c82194ef5387278419e0e6">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a9205126955ad38f56e8aca3112bc150a">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ae2a1b0395ac127c792a8049cd0bcc249">gridfire::reaction::Reaction</a></li>
+<li>numMisses()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#addfd61f8cb234881f535fb8f4d618d74">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae7776f4a526db3245e64a74a3b0172d3">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a2f9b0d6a6ac54f6371c5a208c06826ea">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a0b3a7f45604dbb27e832d9559dd20997">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0e1ad148f9f3232992a4b16e440c249a">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a273eb8a3e80d1235d2b3f252e55c5b50">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a94bb1de08a5ff55e1874f595f8c8965c">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
 <li>numSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c">gridfire::exceptions::StaleEngineTrigger</a></li>
+<li>numTriggers()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#afffb4281569963183d7db3ed1568eb3a">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a7e5568c9d7799b7f80ad0d3efe2cd143">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#ae2d27d72af9e1fbf711a58e4583b43a3">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#afc7d3eae8306ee383d76997ac3803327">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a32980aaf6d9c7632c024b4b74b1d9e70">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a34d285584ea96f71b99eefad8c738296">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad2a7c2567b100f97a024f65818ecefed">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_func_o.html b/docs/html/functions_func_o.html
index cb563c19..495e8a6c 100644
--- a/docs/html/functions_func_o.html
+++ b/docs/html/functions_func_o.html
@@ -102,15 +102,16 @@ $(function(){initNavTree('functions_func_o.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_o" name="index_o"></a>- o -</h3><ul>
-<li>observe()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a226b007bfc9960b5c0bb7b88b4f122da">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
+<li>OffDiagonalTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a6dc334b85ffb822880c6740dc457ea52">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></li>
 <li>operator std::string()&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html#ad8ba0f62a2da0d93aba429181e7e6f84">gridfire::expectations::StaleEngineError</a></li>
-<li>operator!=()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a">gridfire::MultiscalePartitioningEngineView::QSEGroup</a>, <a class="el" href="classgridfire_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#aac76ec883b4ecebb2a94b2485dae7105">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>operator()()&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa">gridfire::approx8::Jacobian</a>, <a class="el" href="structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0">gridfire::approx8::ODE</a>, <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aec8c0a0b2fbb71cebb40c263f64385b3">gridfire::solver::DirectNetworkSolver::RHSManager</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3">std::hash&lt; gridfire::QSECacheKey &gt;</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html#a4b76e7119050266952ded94d6f0544cb">std::hash&lt; gridfire::reaction::LogicalReactionSet &gt;</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9">std::hash&lt; gridfire::reaction::Reaction &gt;</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921">std::hash&lt; gridfire::reaction::ReactionSet &gt;</a></li>
+<li>operator!=()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a">gridfire::MultiscalePartitioningEngineView::QSEGroup</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8b6008e0f629329bfc62256f4f081b77">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8">gridfire::ReactionSet</a></li>
+<li>operator()()&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa">gridfire::approx8::Jacobian</a>, <a class="el" href="structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0">gridfire::approx8::ODE</a>, <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3">std::hash&lt; gridfire::QSECacheKey &gt;</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9">std::hash&lt; gridfire::reaction::Reaction &gt;</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921">std::hash&lt; gridfire::reaction::ReactionSet &gt;</a></li>
 <li>operator&lt;()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
-<li>operator=()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac510dce14a6033551318c0c7b241f3c8">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>operator==()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88">gridfire::MultiscalePartitioningEngineView::QSEGroup</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81">gridfire::QSECacheKey</a>, <a class="el" href="classgridfire_1_1_reaction.html#ac426457cf0a54a15b206549422083bac">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ac426457cf0a54a15b206549422083bac">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a128660f5fbc67054f73811ed2982d24d">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
+<li>operator=()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a">gridfire::ReactionSet</a>, <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af500df838024c82724eaf7fe1cb9b8e8">gridfire::solver::CVODESolverStrategy</a></li>
+<li>operator==()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88">gridfire::MultiscalePartitioningEngineView::QSEGroup</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81">gridfire::QSECacheKey</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae7c930525db447e39b4de18fbc1251a8">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135">gridfire::ReactionSet</a></li>
 <li>operator&gt;()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
-<li>operator[]()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a638067a3e55ec2a422206055881aaaad">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
+<li>operator[]()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b">gridfire::ReactionSet</a></li>
+<li>OrTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#aaf4f8a090bdd10eeba0b7849fa8ed888">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_func_p.html b/docs/html/functions_func_p.html
index 17da39b4..c2153864 100644
--- a/docs/html/functions_func_p.html
+++ b/docs/html/functions_func_p.html
@@ -102,16 +102,17 @@ $(function(){initNavTree('functions_func_p.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_p" name="index_p"></a>- p -</h3><ul>
+<li>pack_isotope_id()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ac73e9476c89ec7066999b0986bc0d9c1">gridfire::rates::weak::WeakRateInterpolator</a></li>
 <li>parse()&#160;:&#160;<a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf">gridfire::io::NetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8">gridfire::io::SimpleReactionListFileParser</a>, <a class="el" href="class_py_network_file_parser.html#afe09d1e5b07110e62cf4c6ec713cff54">PyNetworkFileParser</a></li>
-<li>partitionByTimescale()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ad4d29ee55f89384807616d1068797067">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>partitionNetwork()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>peName()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97">gridfire::reaction::Reaction</a></li>
+<li>partitionByTimescale()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>partitionNetwork()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c327a40d7c667043826002975baa2b4">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>peName()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#af775f97f4d5e144e33bc6e0ba58a5851">gridfire::reaction::ReaclibReaction</a></li>
 <li>populateReactionIDMap()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567">gridfire::GraphEngine</a></li>
 <li>populateSpeciesToIndexMap()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391">gridfire::GraphEngine</a></li>
 <li>precomputeNetwork()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd">gridfire::GraphEngine</a></li>
 <li>primeEngine()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878">PyDynamicEngine</a></li>
-<li>product_species()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c">gridfire::reaction::Reaction</a></li>
-<li>products()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02">gridfire::reaction::Reaction</a></li>
+<li>product_species()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a5c60feacb0ac48b35323d9f688315316">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#ac2306d841bad605b7c9ae104397cec0f">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a67c8fa4d5929c7a8cbca9b3d9dd2b704">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0d16572ae2b664374d32ee6c4e22123a">gridfire::reaction::Reaction</a></li>
+<li>products()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aed0ea28ed3ba96a9f86aa9db947ec01c">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#ac2918935929030e8d218dc8d107a78f9">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a5f563b99bb550d5bafa2a989502de019">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a3d7451045d8df41ea98b5e419e0e5ab0">gridfire::reaction::Reaction</a></li>
 <li>PyDynamicNetworkSolverStrategy()&#160;:&#160;<a class="el" href="class_py_dynamic_network_solver_strategy.html#a4a3fce2a9853e7192354834bf2b36159">PyDynamicNetworkSolverStrategy</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_func_q.html b/docs/html/functions_func_q.html
index 76f56790..c0123264 100644
--- a/docs/html/functions_func_q.html
+++ b/docs/html/functions_func_q.html
@@ -103,7 +103,7 @@ $(function(){initNavTree('functions_func_q.html',''); initResizable(true); });
 
 <h3><a id="index_q" name="index_q"></a>- q -</h3><ul>
 <li>QSECacheKey()&#160;:&#160;<a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#a3078528fc69b8e687448d3108a216c03">gridfire::QSECacheKey</a></li>
-<li>qValue()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8">gridfire::reaction::Reaction</a></li>
+<li>qValue()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#afedb724bf9f1c8fc91d853f2bedb10cb">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a11c714febaf818f1d4d6c19a064d707e">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae47931948f12816eb890c0db4fff4d68">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c">gridfire::reaction::Reaction</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_func_r.html b/docs/html/functions_func_r.html
index 30dcb5c1..5c77e81a 100644
--- a/docs/html/functions_func_r.html
+++ b/docs/html/functions_func_r.html
@@ -102,19 +102,21 @@ $(function(){initNavTree('functions_func_r.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_r" name="index_r"></a>- r -</h3><ul>
-<li>rateCoefficients()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e">gridfire::reaction::Reaction</a></li>
+<li>rateCoefficients()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#adfed51cf788a7ed4770cbd5945ddab2f">gridfire::reaction::ReaclibReaction</a></li>
 <li>RauscherThielemannPartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
-<li>reactant_species()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923">gridfire::reaction::Reaction</a></li>
-<li>reactants()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b">gridfire::reaction::Reaction</a></li>
-<li>Reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c">gridfire::reaction::Reaction</a></li>
+<li>ReaclibReaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a264112a230817a6080c770686e5bcc01">gridfire::reaction::ReaclibReaction</a></li>
+<li>reactant_species()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aae06ff559026e3ce242a42cdd888c5a0">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad85ca288289b25d482cbb8e3ff270028">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a4be8440aa7e79eab1d44b5d83bcdab79">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a82c14096308cdc9126ab6d9667febcd2">gridfire::reaction::Reaction</a></li>
+<li>reactants()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1362d46630f30203027093e35883d1b1">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad095aba46860fec0e68386bf04f7f142">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a0c533797f18c2fe4945f1afb3fb06d5d">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ac7b08c61cdc97268b9442afec4d08dad">gridfire::reaction::Reaction</a></li>
+<li>ReactionSet()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de">gridfire::ReactionSet</a></li>
 <li>rebuild()&#160;:&#160;<a class="el" href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490">gridfire::GraphEngine</a>, <a class="el" href="class_py_dynamic_engine.html#a3d30a9116825ab2c5c209bc2712126bc">PyDynamicEngine</a></li>
-<li>recordADTape()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889">gridfire::GraphEngine</a></li>
-<li>remove_reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a89c4c5af12aef7fbfc24316c88237e22">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>rescueEdgeSpeciesDestructionChannel()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f">gridfire::AdaptiveEngineView</a></li>
+<li>recordADTape()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#ab29ef3225c8fcda012b10765df064b63">gridfire::GraphEngine</a></li>
+<li>recordEpsADTape()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a16b8cd1b0e19b4d4519596a4e22eaf5c">gridfire::GraphEngine</a></li>
+<li>remove_reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd">gridfire::ReactionSet</a></li>
+<li>rescueEdgeSpeciesDestructionChannel()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a0439f464865b4c01bad0f6be6055c3fc">gridfire::AdaptiveEngineView</a></li>
 <li>reserveJacobianMatrix()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5">gridfire::GraphEngine</a></li>
-<li>rev_sparse_jac()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4">gridfire::GraphEngine::AtomicReverseRate</a></li>
-<li>reverse()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e">gridfire::GraphEngine::AtomicReverseRate</a></li>
-<li>RHSManager()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a4ba187f1a0deca0a82ac3c9a14883855">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
+<li>reset()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a2436d8643911ade907e03fb29531ceaa">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#abf218d255bde157540b51cd6a54f6eb1">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#afe337517b77e5433d92ded3a64565141">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#ab42043e55c81bac5d3f981bc139579de">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a9b782cbf033ed2023da6b2d55dcefc4e">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#af4034fa431e6c88fd05c50cce31b2fa0">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a0fe6af73b11b820561bd4e5552890d4e">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
+<li>rev_sparse_jac()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4">gridfire::GraphEngine::AtomicReverseRate</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae9d61bdda761da89733408c232d7220e">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></li>
+<li>reverse()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e">gridfire::GraphEngine::AtomicReverseRate</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#aad13654ea15547c2c95035c3b7937d58">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_func_s.html b/docs/html/functions_func_s.html
index 63f01ae3..039a5554 100644
--- a/docs/html/functions_func_s.html
+++ b/docs/html/functions_func_s.html
@@ -103,21 +103,24 @@ $(function(){initNavTree('functions_func_s.html',''); initResizable(true); });
 
 <h3><a id="index_s" name="index_s"></a>- s -</h3><ul>
 <li>selectPartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b">gridfire::partition::CompositePartitionFunction</a></li>
-<li>set_callback()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a6bb0738eef5669b3ad83a3c65a0d1e96">gridfire::solver::DirectNetworkSolver</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a4d97ee85933d5e5f90d4194bb021a1dc">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>, <a class="el" href="class_py_dynamic_network_solver_strategy.html#a112a7babc03858a69d6994a7155370d3">PyDynamicNetworkSolverStrategy</a></li>
+<li>set_callback()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a77638ef3d2279009e5a57bbd3f0eb63b">gridfire::solver::CVODESolverStrategy</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a4d97ee85933d5e5f90d4194bb021a1dc">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>, <a class="el" href="class_py_dynamic_network_solver_strategy.html#a112a7babc03858a69d6994a7155370d3">PyDynamicNetworkSolverStrategy</a></li>
+<li>set_stdout_logging_enabled()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a46dacb6eb075f2aadac0e56972deeaa3">gridfire::solver::CVODESolverStrategy</a></li>
 <li>setFormat()&#160;:&#160;<a class="el" href="classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4">gridfire::Network</a></li>
-<li>setNetworkReactions()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#acb5fa7f03cd89b8c1b6b9ffdf3abb12e">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6">PyDynamicEngine</a></li>
+<li>setNetworkReactions()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#adedc8547568d643473bdfcc86040b488">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a49025489901e22a20cdf99b455ff2ff0">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a52288e2629609c8438a3c9bc3f910016">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#af99f5e4871808188d00379c1c35868fe">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#af469cba3be850d53f659ec173f0eb4e4">PyDynamicEngine</a></li>
 <li>setPrecomputation()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1">gridfire::GraphEngine</a></li>
 <li>setScreeningModel()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac">PyDynamicEngine</a></li>
 <li>setStiff()&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#aefed972081514c29cdaaa1efd857ad8d">gridfire::approx8::Approx8Network</a>, <a class="el" href="classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe">gridfire::Network</a></li>
 <li>setUseReverseReactions()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197">gridfire::GraphEngine</a></li>
 <li>SimpleReactionListFileParser()&#160;:&#160;<a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993">gridfire::io::SimpleReactionListFileParser</a></li>
-<li>size()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#afa41050855b842c63db16c94d2e9b897">gridfire::reaction::LogicalReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>solveQSEAbundances()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c5fcb8e3396d74359fd601554c9ffa9">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>sourceLabel()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0">gridfire::Reaction</a></li>
-<li>sources()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#add094eda0e71126f8443698d7f3317f4">gridfire::reaction::LogicalReaction</a></li>
+<li>SimulationTimeTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a235f84a37370a1ca2226fb881b4051c7">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></li>
+<li>size()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a4c58951d9f7ab252717c226b0da80a9d">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf">gridfire::ReactionSet</a></li>
+<li>solveQSEAbundances()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a40ce2c18063cd56cffd58419b9ae96bf">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>sourceLabel()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a96d4ab87de02e9b0be3c248e2e955b4b">gridfire::reaction::ReaclibReaction</a></li>
+<li>sources()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad4979f437dc787a5475c3a029804ed99">gridfire::reaction::LogicalReaclibReaction</a></li>
 <li>StaleEngineError()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50">gridfire::exceptions::StaleEngineError</a>, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10">gridfire::expectations::StaleEngineError</a></li>
 <li>StaleEngineTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d">gridfire::exceptions::StaleEngineTrigger</a></li>
-<li>stoichiometry()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac">gridfire::Reaction</a></li>
+<li>StepDerivatives()&#160;:&#160;<a class="el" href="structgridfire_1_1_step_derivatives.html#a26deeb236e77eddb0119ad368a5d8f1c">gridfire::StepDerivatives&lt; T &gt;</a></li>
+<li>stoichiometry()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a8bf7dc26d9f1375625df99bceba08a44">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a57b2695d152360a6ba08776cc760e3a1">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ad49f4cad024db72c966d949c75f1ce4d">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a55b7f61d9bde45f2ca485c1b07a05950">gridfire::Reaction</a></li>
 <li>supports()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="class_py_partition_function.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8">PyPartitionFunction</a></li>
 <li>syncInternalMaps()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f">gridfire::GraphEngine</a></li>
 </ul>
diff --git a/docs/html/functions_func_t.html b/docs/html/functions_func_t.html
index b7e4e81a..ddd0fd8a 100644
--- a/docs/html/functions_func_t.html
+++ b/docs/html/functions_func_t.html
@@ -103,10 +103,11 @@ $(function(){initNavTree('functions_func_t.html',''); initResizable(true); });
 
 <h3><a id="index_t" name="index_t"></a>- t -</h3><ul>
 <li>temperature()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9">gridfire::exceptions::StaleEngineTrigger</a></li>
-<li>TemplatedReactionSet()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a54c8cd7c34564277fe28eefc623f666e">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>TimestepContext()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#aea1385260976dff133404db5b453ba98">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
+<li>TimestepCollapseTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a171e6dee7f7d8275b3e8875eaeb0850d">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
+<li>TimestepContext()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a406b36ce5f192c855eb3c8dcf0fde0bd">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
+<li>toString()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a165b68f0ebb30cda5ffaafa7c0f27617">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
 <li>totalSteps()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408">gridfire::exceptions::StaleEngineTrigger</a></li>
-<li>type()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#ab0c67985a972707eac0ebc64417dfb97">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3aa478acf12e09b6dd268f744071b2a0">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="class_py_partition_function.html#a07f4d0ff83822dd2800897161d2a3717">PyPartitionFunction</a></li>
+<li>type()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#ab0c67985a972707eac0ebc64417dfb97">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3aa478acf12e09b6dd268f744071b2a0">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aade329265a26bdc005c0793ba7a36ab2">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#acbfa2d4e23dff6641be21cc1e754be15">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a3c0fbdd07f9a837bd031c5bdc58e0e8f">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a186856dc2ce85d8cc4db43c7164b6afa">gridfire::Reaction</a>, <a class="el" href="class_py_partition_function.html#a07f4d0ff83822dd2800897161d2a3717">PyPartitionFunction</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_func_u.html b/docs/html/functions_func_u.html
index eab795a1..44323ef2 100644
--- a/docs/html/functions_func_u.html
+++ b/docs/html/functions_func_u.html
@@ -103,7 +103,7 @@ $(function(){initNavTree('functions_func_u.html',''); initResizable(true); });
 
 <h3><a id="index_u" name="index_u"></a>- u -</h3><ul>
 <li>UnableToSetNetworkReactionsError()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#acb3183c3dea755a8a26b00d638183c30">gridfire::exceptions::UnableToSetNetworkReactionsError</a></li>
-<li>update()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8">PyDynamicEngine</a></li>
+<li>update()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a62f7dbbcf0554caa68e3d778580b3c1d">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0dd783afab7ef6005f0241f9de7b31f6">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a846432abf33c7602af0fbb5475c0ad32">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a775dac97d109c5fcd5c0287ca98f308c">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a179cb09a91d5c638d7a347137b208767">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a468bf58f66417493501c59d7a8aabc98">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#af6bff6a484e8729445c26620b489665d">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8">PyDynamicEngine</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_func_v.html b/docs/html/functions_func_v.html
index f1d98719..55d54b92 100644
--- a/docs/html/functions_func_v.html
+++ b/docs/html/functions_func_v.html
@@ -103,10 +103,10 @@ $(function(){initNavTree('functions_func_v.html',''); initResizable(true); });
 
 <h3><a id="index_v" name="index_v"></a>- v -</h3><ul>
 <li>validateConservation()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be">gridfire::GraphEngine</a></li>
-<li>validateGroupsWithFluxAnalysis()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aa55ed182301d216264daae3e6dfd8917">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>validateGroupsWithFluxAnalysis()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ad94c6fa2281d9104471631c6b90f411e">gridfire::MultiscalePartitioningEngineView</a></li>
 <li>validateNetworkState()&#160;:&#160;<a class="el" href="classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0">gridfire::DefinedEngineView</a></li>
 <li>validateState()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40">gridfire::AdaptiveEngineView</a></li>
-<li>values()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6d13bb5294f5dae7e2eb1d26720f944e">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
+<li>values()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6f5611ca669567534df1bd793e90d2e3">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_func_w.html b/docs/html/functions_func_w.html
index 0bd80a47..8a90ec11 100644
--- a/docs/html/functions_func_w.html
+++ b/docs/html/functions_func_w.html
@@ -102,7 +102,11 @@ $(function(){initNavTree('functions_func_w.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_w" name="index_w"></a>- w -</h3><ul>
+<li>WeakRateInterpolator()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a1efafe82d25d36b93a60a6fccbd5ca3d">gridfire::rates::weak::WeakRateInterpolator</a></li>
+<li>WeakReaction()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a222c0662bf5323037c9fdddfb929d4f7">gridfire::rates::weak::WeakReaction</a></li>
+<li>WeakReactionMap()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#aecc8c1b92d63da87827879ad5330c11e">gridfire::rates::weak::WeakReactionMap</a></li>
 <li>what()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#afe87ef508f5b20ca99ec70510747caff">gridfire::exceptions::FailedToPartitionEngineError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1">gridfire::exceptions::NetworkResizedError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4">gridfire::exceptions::StaleEngineError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aac4899d001338688def2b809b55bb2ba">gridfire::exceptions::StaleEngineTrigger</a>, <a class="el" href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69">gridfire::exceptions::UnableToSetNetworkReactionsError</a></li>
+<li>why()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a01033721e8f5d90483d65c904399cf96">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a3bf0d69122f801deca4b62db47262d9b">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#abfb3eb7befba646ce9f11f36a63750ae">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a7bca0da16353f4b04a2f40fb29c07922">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3af973e466ba62ebf1e41c608355e327">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a9dfab0b765d3a4c362cecd860d59f58a">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a22d8bc7aacbc388108225c26158e918c">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_func_~.html b/docs/html/functions_func_~.html
index 9cf2a54f..3a801ba9 100644
--- a/docs/html/functions_func_~.html
+++ b/docs/html/functions_func_~.html
@@ -102,16 +102,26 @@ $(function(){initNavTree('functions_func_~.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index__7E" name="index__7E"></a>- ~ -</h3><ul>
+<li>~AndTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a2ee18348ca65cc1aa56eb41292a39bc5">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>~ColumnBase()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_column_base.html#a704c1fc03271c14fc9f3da43612a1589">gridfire::utils::ColumnBase</a></li>
+<li>~CVODESolverStrategy()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aca2d01a907c3bb828f9f99ad05506578">gridfire::solver::CVODESolverStrategy</a></li>
 <li>~Engine()&#160;:&#160;<a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">gridfire::Engine</a></li>
 <li>~EngineError()&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897">gridfire::expectations::EngineError</a></li>
 <li>~EngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74">gridfire::EngineView&lt; EngineT &gt;</a></li>
+<li>~EveryNthTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae28e54330d575d9d1d3d8ebc6e7a6f75">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></li>
 <li>~Network()&#160;:&#160;<a class="el" href="classgridfire_1_1_network.html#ab8d83289b62dda9b4e02f25311f85b79">gridfire::Network</a></li>
 <li>~NetworkFileParser()&#160;:&#160;<a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3">gridfire::io::NetworkFileParser</a></li>
 <li>~NetworkSolverStrategy()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></li>
+<li>~NotTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#afa4173490171d1251cc1757b92841755">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>~OrTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#afe30f95de39c1375557d032b8a8111f9">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></li>
 <li>~PartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a197a0663dcfb4ab4be3b0e14b98391db">gridfire::partition::PartitionFunction</a></li>
+<li>~ReaclibReaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae2b9b41a598c5f0dcd050b32985ea44e">gridfire::reaction::ReaclibReaction</a></li>
 <li>~Reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a">gridfire::Reaction</a></li>
 <li>~ScreeningModel()&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7">gridfire::screening::ScreeningModel</a></li>
 <li>~SolverContextBase()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_solver_context_base.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8">gridfire::solver::SolverContextBase</a></li>
+<li>~SolverPluginInterface()&#160;:&#160;<a class="el" href="class_solver_plugin_interface.html#a5611d046cd2fd4d4200785725854e39b">SolverPluginInterface</a></li>
+<li>~Trigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
+<li>~WeakReactionMap()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a73cc5a9d4a236091bbb40f22ed66b2f1">gridfire::rates::weak::WeakReactionMap</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_g.html b/docs/html/functions_g.html
index 0735b7a2..c3e828ce 100644
--- a/docs/html/functions_g.html
+++ b/docs/html/functions_g.html
@@ -104,30 +104,41 @@ $(function(){initNavTree('functions_g.html',''); initResizable(true); });
 <h3><a id="index_g" name="index_g"></a>- g -</h3><ul>
 <li>G_norm_high&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a3cb7ee6f3031997aab99c5502b61d90e">gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints</a></li>
 <li>G_norm_low&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a7d291ba80f958fe34ae72b21c6fab380">gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints</a></li>
-<li>generateJacobianMatrix()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a03fc187d3d306b9058103b9522cbbaeb">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#acdf5ad8765290ea2b78170235aea391d">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d">PyDynamicEngine</a></li>
+<li>generateJacobianMatrix()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a8da7664cf483cba7f979f855a74c3559">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ab80eadd713a40e9263e5231737e956d0">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a21d15531309456ee83f7675251e7a1bf">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ae11f6267077025ca342e2e263ad87e5e">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ab9f71bc9a1c0f98ec9cc1c7da00fd975">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d">PyDynamicEngine</a></li>
 <li>generateStoichiometryMatrix()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9">PyDynamicEngine</a></li>
+<li>get_all_reactions()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a9ab9f6f64455eb46172ebda5e8cc3ec5">gridfire::rates::weak::WeakReactionMap</a></li>
 <li>get_interpolation_points()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3baed110ab1b12e22071dc2d92c55db9">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
+<li>get_log_neutrino_loss_from_payload()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a7f0d21c80fbbf94ead613e678d44b835">gridfire::rates::weak::WeakReaction</a></li>
+<li>get_log_rate_from_payload()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a14555633289fc3822e927afca7401e49">gridfire::rates::weak::WeakReaction</a></li>
+<li>get_rate_derivatives()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a48cec4c8f1e117f73d7e88c3597b4d16">gridfire::rates::weak::WeakRateInterpolator</a></li>
+<li>get_rates()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ae36a65c29c34b004111d266dc668107b">gridfire::rates::weak::WeakRateInterpolator</a></li>
+<li>get_species_reactions()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a290da6766a6d3094a5aae8b7cbcd0d70">gridfire::rates::weak::WeakReactionMap</a></li>
+<li>get_stdout_logging_enabled()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a87b7b39e2a15cc30b118c8e6fda9a1a6">gridfire::solver::CVODESolverStrategy</a></li>
 <li>getBaseEngine()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6">gridfire::EngineView&lt; EngineT &gt;</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine_view.html#a51680b135cfc3eea40daf9ef5aa903e0">PyDynamicEngineView</a>, <a class="el" href="class_py_engine_view.html#a3cd83dc57b521c65a14edf70357a8845">PyEngineView</a></li>
+<li>getCellData()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_column.html#a5bd0ad730a684e1a8b583c5c27cca6e8">gridfire::utils::Column&lt; T &gt;</a>, <a class="el" href="classgridfire_1_1utils_1_1_column_base.html#a5e07c8e33c96ee8095ebefbf9b75cb36">gridfire::utils::ColumnBase</a></li>
 <li>getDepth()&#160;:&#160;<a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4">gridfire::GraphEngine</a>, <a class="el" href="class_py_dynamic_engine.html#adba68716d832b6100e08d32fbc36f13c">PyDynamicEngine</a></li>
 <li>getDynamicSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888">gridfire::MultiscalePartitioningEngineView</a></li>
 <li>getFastSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e">gridfire::MultiscalePartitioningEngineView</a></li>
 <li>getFormat()&#160;:&#160;<a class="el" href="classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118">gridfire::Network</a></li>
-<li>getJacobianMatrixEntry()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ac961484383e86d9712a424728e068633">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159">PyDynamicEngine</a></li>
+<li>getHeader()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_column.html#ad6a4f9aee1321e90896e5f4583d7311f">gridfire::utils::Column&lt; T &gt;</a>, <a class="el" href="classgridfire_1_1utils_1_1_column_base.html#a4dd5f1409d3190eab9ba07eb6e611248">gridfire::utils::ColumnBase</a></li>
+<li>getJacobianMatrixEntry()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#adf3b8a5734983509ca02b7a1a480119f">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#aa49532266ff959ac66f501336f102ce8">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a88dbf350dc0ea3e2b64d825f489e0d60">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a8ab5308629b8707922e5954776254aa6">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a586da5402750151fee5db2666785b6e4">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159">PyDynamicEngine</a></li>
 <li>getMolarAbundance()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea">gridfire::exceptions::StaleEngineTrigger</a></li>
 <li>getNetReactionStoichiometry()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9">gridfire::GraphEngine</a></li>
 <li>getNetworkFile()&#160;:&#160;<a class="el" href="classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718">gridfire::FileDefinedEngineView</a></li>
-<li>getNetworkReactions()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ad751f2c1306895ee74a61f2071ca96eb">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a5988cfba247631ba6c00795cafda9a38">PyDynamicEngine</a></li>
+<li>getNetworkReactions()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a3247c1e6a76de5622223ee7b5ca3452a">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a5f9db5a9287aa03b2fa4d516e9a576b6">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#af496e04f7be9a0a51ac65dc95f901ffe">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a3b7f3ba85821165f58f168bc68f86b2d">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a253e51d6dc7226a863a123683049af61">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a1d5143640666631501cf229bc491516e">PyDynamicEngine</a></li>
 <li>getNetworkSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3">gridfire::Engine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d">PyDynamicEngine</a>, <a class="el" href="class_py_engine.html#a2d240423899e039c2ca688e96f8af1f2">PyEngine</a></li>
 <li>getParser()&#160;:&#160;<a class="el" href="classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f">gridfire::FileDefinedEngineView</a></li>
 <li>getPartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44">gridfire::GraphEngine</a></li>
-<li>getReactionSetSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a1596de3439735a45ac344fa85ace6c82">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
+<li>getReactionSetSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b">gridfire::ReactionSet</a></li>
+<li>getRowCount()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_column.html#a7ff9084a0486fb8b08edfe866480568b">gridfire::utils::Column&lt; T &gt;</a>, <a class="el" href="classgridfire_1_1utils_1_1_column_base.html#ab6e4cb14c8a0ad7b6b9ad0fbde766cba">gridfire::utils::ColumnBase</a></li>
 <li>getScreeningModel()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5">PyDynamicEngine</a></li>
-<li>getSpeciesDestructionTimescales()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a522e78bce9ff062939572248d57f8cea">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#aef8f6bde24d27345067b71084330c7da">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aa38c367ef3c74d012ccd10521cd5a727">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3">PyDynamicEngine</a></li>
-<li>getSpeciesIndex()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a9055feb245524a5a9549ace935f059ff">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a914f6abc61805cddaebcb8f3cf470dda">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a91d32b7197fcb27ee697d5bfde960f3f">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a2ee1d745c1c21b9fcb652c96c42f1091">PyDynamicEngine</a></li>
-<li>getSpeciesTimescales()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a560612347bbd5b7b380e990624d01105">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22">PyDynamicEngine</a></li>
+<li>getSpeciesDestructionTimescales()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aa861db5f6fc4e85fb51f524e4e1367c6">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a7bcf169ba1e12e3356d4bcc27c3fc554">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a25c040d3078f6ff2ef38f733eb68f1fa">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a47df5a9c448dd1ce8654df819a6cc8ff">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a14b0c7ec882b2ad2370f7aa729b9f9">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3">PyDynamicEngine</a></li>
+<li>getSpeciesIndex()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#abb811382522c31f6456787edd4f59ace">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#af3b355ffcda6a8f2841184cc56e3761a">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a8f66fb76c9f983ee93bf8b95cdc85596">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a9e426e6c178dd80bd58090489d3b2be9">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a8db21995e6878f4043f3a5a45bf36d5e">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a95d10a7b240d543a1bc6c67ddf2dc8e0">PyDynamicEngine</a></li>
+<li>getSpeciesTimescales()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a57a218c5a145f589531777c8615b7408">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a18f46d92ea7e04068ad9e7af4ed605a8">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#ae7114f5ebc6667b5e5971c0450ed03d9">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a7dde968244f3c4934c7738445c709232">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aea2c3d2ae6ddf77bd4a9b07b86f3306b">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22">PyDynamicEngine</a></li>
 <li>getState()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5">gridfire::exceptions::StaleEngineTrigger</a></li>
-<li>getStoichiometryMatrixEntry()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a510b920dea726aef859ac1f6d051807e">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83">PyDynamicEngine</a></li>
-<li>GraphEngine()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#afad967546b611d9c005268760feb75d5">gridfire::GraphEngine</a></li>
+<li>getStoichiometryMatrixEntry()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#abe2ca6426e10cc6a10090eecf7098dbe">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#af1843cfd2a95bfa46ab40d4c4de11ef9">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad19c8451b6f624e2938f771cc067d5c1">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ad90a2d770ebf098f0d6d5f5339961e95">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7140384baaaa0bd05ca448a0d8fec471">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83">PyDynamicEngine</a></li>
+<li>getWeakRateInterpolator()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aefc75b3149bee2da878177279ad375da">gridfire::rates::weak::WeakReaction</a></li>
+<li>GraphEngine()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a38aaafb1d9a6548bc8e8cb672417bbbe">gridfire::GraphEngine</a></li>
 <li>ground_state_spin&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aec714697f3f5102124561252233fc350">gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData</a>, <a class="el" href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#acf5c38826050594aee98d746d0ba40b2">gridfire::partition::record::RauscherThielemannPartitionDataRecord</a></li>
 <li>GroundStatePartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a8afa2aee993eb3ed8d01c887d39b57eb">gridfire::partition::GroundStatePartitionFunction</a></li>
 </ul>
diff --git a/docs/html/functions_h.html b/docs/html/functions_h.html
index 8d54da41..17432e89 100644
--- a/docs/html/functions_h.html
+++ b/docs/html/functions_h.html
@@ -102,7 +102,7 @@ $(function(){initNavTree('functions_h.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
 
 <h3><a id="index_h" name="index_h"></a>- h -</h3><ul>
-<li>hash()&#160;:&#160;<a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d">gridfire::QSECacheKey</a>, <a class="el" href="classgridfire_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a272800016c83f259f5c6a92dc797353c">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
+<li>hash()&#160;:&#160;<a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d">gridfire::QSECacheKey</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad2ba6b584cb2df7c15633fca81ce6af1">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a41b1c16f499c9255251ed43725cf698c">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a661dd461e51c37133f7f9931389fd3cc">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7ba8c18cd5445aa3499a6fd351183f7a">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99">gridfire::ReactionSet</a></li>
 <li>hit()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5eb642e161ffb5500ccc1e412849ee5e">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
 <li>hits()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#aaf8b925a169a732c14f4451a33451f51">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
 </ul>
diff --git a/docs/html/functions_i.html b/docs/html/functions_i.html
index 4af38102..570533e3 100644
--- a/docs/html/functions_i.html
+++ b/docs/html/functions_i.html
@@ -103,9 +103,9 @@ $(function(){initNavTree('functions_i.html',''); initResizable(true); });
 
 <h3><a id="index_i" name="index_i"></a>- i -</h3><ul>
 <li>ic12&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#a95b9a07e29285884e6de523f8132f653">gridfire::approx8::Approx8Net</a></li>
-<li>id()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905">gridfire::reaction::Reaction</a></li>
+<li>id()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad01a15d95878c9edbf57cd9045c4413b">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a768329002a4f0b8604b1aa51d56b5d1b">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a06312f834439ccf93012dea53cab47ce">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a94b92308b9619ec20c690e55157786ba">gridfire::reaction::Reaction</a></li>
 <li>iDensity&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#a562c2383f585d3e9984225584d61c037">gridfire::approx8::Approx8Net</a></li>
-<li>identifyMeanSlowestPool()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a54ca8004fbd8d6d3ea6f67efeb5dbc8d">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>identifyMeanSlowestPool()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a70f4a0c4123b7f78305f64eb11beeeeb">gridfire::MultiscalePartitioningEngineView</a></li>
 <li>iEnergy&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#a18501627dceb5d084bc7ba19f119826f">gridfire::approx8::Approx8Net</a></li>
 <li>ih1&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#acc735a17e005f7e25c68a86d9735ec4c">gridfire::approx8::Approx8Net</a></li>
 <li>ihe3&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#ab0a43fee658efcaacfe7e6fb4870569b">gridfire::approx8::Approx8Net</a></li>
@@ -113,13 +113,14 @@ $(function(){initNavTree('functions_i.html',''); initResizable(true); });
 <li>img24&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#a9647205f52fb0fa21316be39c3a6d709">gridfire::approx8::Approx8Net</a></li>
 <li>in14&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#a1af9135867aa3786721b89dbfdc4aee0">gridfire::approx8::Approx8Net</a></li>
 <li>ine20&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#ad43418fd8c536ebc814d5e6de555256c">gridfire::approx8::Approx8Net</a></li>
-<li>inputs()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a0adf1074b5e6ba448cedff7563c450d0">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
+<li>initialize_cvode_integration_resources()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afc6c55237df4af240c4c842305085d91">gridfire::solver::CVODESolverStrategy</a></li>
+<li>inputs()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad19c39ced17e400af9f46478546a8fa1">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
 <li>InputsAtCompileTime&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a753b594931f9ee122e2079986ad572c9">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
 <li>InputType&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3ebf684b36e98da38d8ee6f0be4f91e2">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
 <li>involvesSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b">gridfire::GraphEngine</a></li>
 <li>io16&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#ab4e95622dc0414ad7e636ef811e600af">gridfire::approx8::Approx8Net</a></li>
 <li>is_in_equilibrium&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
-<li>is_reverse()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba">gridfire::reaction::Reaction</a></li>
+<li>is_reverse()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90b62d922d91832859516450cf8e3876">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a640b0bdbed9ed7c2a2e9880ddbcafc1d">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a181b2c75af1f2701c43594c5bb2bac2d">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a3906a668410e02239f9031b5fc580214">gridfire::reaction::Reaction</a></li>
 <li>isPrecomputationEnabled()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f">gridfire::GraphEngine</a></li>
 <li>isStale()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14">PyDynamicEngine</a></li>
 <li>isStiff()&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a5b17b2831389829533385900ce19a37a">gridfire::approx8::Approx8Network</a>, <a class="el" href="classgridfire_1_1_network.html#ae93ad65deba79def4b77d420e7affa0b">gridfire::Network</a></li>
diff --git a/docs/html/functions_j.html b/docs/html/functions_j.html
index 6fcbb2c5..bfee9c6b 100644
--- a/docs/html/functions_j.html
+++ b/docs/html/functions_j.html
@@ -102,7 +102,6 @@ $(function(){initNavTree('functions_j.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
 
 <h3><a id="index_j" name="index_j"></a>- j -</h3><ul>
-<li>JacobianFunctor()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a></li>
 <li>JacobianType&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7353c20a6eac2ac0d9d13791577080d">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_l.html b/docs/html/functions_l.html
index 071e14f3..491a43db 100644
--- a/docs/html/functions_l.html
+++ b/docs/html/functions_l.html
@@ -103,9 +103,20 @@ $(function(){initNavTree('functions_l.html',''); initResizable(true); });
 
 <h3><a id="index_l" name="index_l"></a>- l -</h3><ul>
 <li>label&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#a2165deb1c0a54a5086b496cf34604fa5">gridfire::reaclib::ReactionRecord</a></li>
-<li>last_observed_time&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a3e4d242a2f5f6726b980119ed80a9901">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
-<li>last_step_time&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a349187ed1b13c91ef6f9d930db58d97b">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
-<li>LogicalReaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#a6965906ea33ebd0d615811219d9e9537">gridfire::reaction::LogicalReaction</a></li>
+<li>last_step_time&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a92187c15b7bcb90adebecc87e1436a">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
+<li>log_antineutrino_loss_bd&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a9d4db2970fc7f525824f6666198b3d56">gridfire::rates::weak::RateDataRow</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9134b85837be88ece72c20df9edce50d">gridfire::rates::weak::WeakRatePayload</a></li>
+<li>log_beta_minus&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ab41dace2493e036460736d8124a3475c">gridfire::rates::weak::RateDataRow</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aa2e81d295afba465427e46b36e1438e4">gridfire::rates::weak::WeakRatePayload</a></li>
+<li>log_beta_plus&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a359555f2b05e4b30bf810e12456df43b">gridfire::rates::weak::RateDataRow</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9d71d093fbb35cd8a451ea12cde28771">gridfire::rates::weak::WeakRatePayload</a></li>
+<li>log_electron_capture&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a075a70baa4ac5859fb01d493e08debdd">gridfire::rates::weak::RateDataRow</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aeb0494f46a0c6b9e29ed4cc15f07364b">gridfire::rates::weak::WeakRatePayload</a></li>
+<li>log_neutrino_loss&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#aa603395b65c8639f8d93f73b7d9bd61e">gridfire::rates::weak::WeakReactionEntry</a></li>
+<li>log_neutrino_loss_ec&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#abd2d7fc00f582316eae824ccafef9b4b">gridfire::rates::weak::RateDataRow</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a6bbeb82cc27fd59ceafa320c1515106a">gridfire::rates::weak::WeakRatePayload</a></li>
+<li>log_positron_capture&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#afc3f5d3e5c3ec52134619fd462922f85">gridfire::rates::weak::RateDataRow</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#abe1b2dd11ec550311a58555f3a945cbe">gridfire::rates::weak::WeakRatePayload</a></li>
+<li>log_rate&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a90b6e47918fa750c28917ba6136c7880">gridfire::rates::weak::WeakReactionEntry</a></li>
+<li>log_rhoYe&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a17dde21438cabec9ae23a0d318c41a7a">gridfire::rates::weak::WeakReactionEntry</a></li>
+<li>log_rhoye&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ad7908a8b8a1db5014f23a7b3855156b0">gridfire::rates::weak::RateDataRow</a></li>
+<li>log_step_diagnostics()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a53c14f504e5b7827b4bab4a0a7a13341">gridfire::solver::CVODESolverStrategy</a></li>
+<li>log_time()&#160;:&#160;<a class="el" href="class_solver_plugin_interface.html#a493a30c0ae4b2e1a89b7d03c02c0041c">SolverPluginInterface</a></li>
+<li>LogicalReaclibReaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a0ff112dca1f88070effb6700429b42b4">gridfire::reaction::LogicalReaclibReaction</a></li>
 <li>LogManager&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de">gridfire::io::SimpleReactionListFileParser</a></li>
 <li>lowerIndex&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a2da59e4f6e2ba3eff581bacabbf387de">gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope</a></li>
 </ul>
diff --git a/docs/html/functions_m.html b/docs/html/functions_m.html
index abb04bd8..09529857 100644
--- a/docs/html/functions_m.html
+++ b/docs/html/functions_m.html
@@ -102,96 +102,132 @@ $(function(){initNavTree('functions_m.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
 
 <h3><a id="index_m" name="index_m"></a>- m -</h3><ul>
+<li>m_A&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a99be74b126d50c15d21c0724d933af87">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a27f1fd8c8a93576f83a4f3320469c83a">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a0d7818e59a8d86e86053bcb6d5d7d2b8">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a6da04b5b15371f7087be03bb337dbdd6">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>m_a&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a0beb567afdecd85e336b493ff85326bd">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></li>
 <li>m_activeReactionIndices&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>m_activeReactions&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965">gridfire::DefinedEngineView</a></li>
+<li>m_activeReactions&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ab5ab06941bf6d97007d0a76658bf2aa6">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a824fe65ae22fa856051f2652764a0bb6">gridfire::DefinedEngineView</a></li>
 <li>m_activeSpecies&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae">gridfire::DefinedEngineView</a></li>
 <li>m_activeSpeciesIndices&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>m_algebraic_abundances&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3af2b37ce21829d9554d702cad074470">gridfire::MultiscalePartitioningEngineView</a></li>
 <li>m_algebraic_species&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>m_algebraic_species_indices&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a53862719dd73f98bc69eecde090cf655">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>m_atomic&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a4f2bf61b35566e439ac8a48da265d215">gridfire::rates::weak::WeakReaction</a></li>
 <li>m_atomicReverseRates&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6">gridfire::GraphEngine</a></li>
+<li>m_B&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#af8ee88421d0dfd92de6df96d686ece38">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a30dec370b61a5f0562956394b89e8f89">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></li>
 <li>m_baseEngine&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93">gridfire::MultiscalePartitioningEngineView</a></li>
 <li>m_cacheConfig&#160;:&#160;<a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#a711acccecadd93495fd08c81838be2d8">gridfire::QSECacheKey</a></li>
-<li>m_cached_result&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
-<li>m_cached_time&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a17b83f2478395c934c4ec2c964e9d35e">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
 <li>m_cacheStats&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>m_callback&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a44fbc45faa9e4b6864ac6b81282941b5">gridfire::solver::DirectNetworkSolver</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a70d801db98fe8e2e4e6010f37da29905">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
-<li>m_chapter&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b">gridfire::reaction::Reaction</a></li>
-<li>m_config&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874">gridfire::io::SimpleReactionListFileParser</a>, <a class="el" href="classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09">gridfire::Network</a>, <a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a2cc12e737a753a42b72a45be3fbfa8ab">gridfire::solver::DirectNetworkSolver</a></li>
-<li>m_constants&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410">gridfire::Network</a></li>
+<li>m_callback&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50c7b4e1ff2c88ce424c745478414e30">gridfire::solver::CVODESolverStrategy</a></li>
+<li>m_chapter&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#adbcb383bac0f47c66251ee1b7c5f539d">gridfire::reaction::ReaclibReaction</a></li>
+<li>m_config&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874">gridfire::io::SimpleReactionListFileParser</a>, <a class="el" href="classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09">gridfire::Network</a>, <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a202fe9e6499aac5f6813e036ee4ed2d5">gridfire::solver::CVODESolverStrategy</a></li>
+<li>m_constants&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410">gridfire::Network</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2f0ee4c0d52db0f58781f90dd39dc0f7">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_constraints&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50d8f309ca897fa83b16db0a1701b339">gridfire::solver::CVODESolverStrategy</a></li>
+<li>m_counter&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a80d6f82095c3b5fdbc46776e183cdb1f">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>m_cvode_mem&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab5a8fa55e36685cac50c1dbdd8dbfa57">gridfire::solver::CVODESolverStrategy</a></li>
+<li>m_data&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_column.html#aaa99c4d00c3b79e37f2e73e7c6854758">gridfire::utils::Column&lt; T &gt;</a></li>
 <li>m_depth&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01">gridfire::GraphEngine</a></li>
 <li>m_dt0&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a6ed8022834e9541b3e547dd867648b0f">gridfire::approx8::Approx8Network</a></li>
 <li>m_dynamic_species&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>m_dynamic_species_indices&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a38b4f0373c3bd81503889650c0bb69bb">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>m_engine&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d">gridfire::GraphEngine::AtomicReverseRate</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a035962dfdfc13d255def98befefcccd9">gridfire::solver::DirectNetworkSolver::RHSManager</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></li>
+<li>m_engine&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d">gridfire::GraphEngine::AtomicReverseRate</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></li>
 <li>m_eps_nuc&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a24207163a7ea2dde675b458f9df37a99">gridfire::exceptions::StaleEngineTrigger::state</a></li>
+<li>m_epsADFun&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a1d5f6a3f217af7f4d0f95bdf7916b774">gridfire::GraphEngine</a></li>
 <li>m_fileName&#160;:&#160;<a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b">gridfire::FileDefinedEngineView</a></li>
 <li>m_filename&#160;:&#160;<a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099">gridfire::io::MESANetworkFileParser</a></li>
 <li>m_format&#160;:&#160;<a class="el" href="classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18">gridfire::Network</a></li>
 <li>m_full_jacobian_sparsity_pattern&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06">gridfire::GraphEngine</a></li>
 <li>m_ground_state_spin&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245">gridfire::partition::GroundStatePartitionFunction</a></li>
 <li>m_hash&#160;:&#160;<a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#ab860b40d4ccb3c16a962d96bc767ff05">gridfire::QSECacheKey</a></li>
+<li>m_header&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_column.html#aaddf58469be3e3fd3bee0f4f660fe9e0">gridfire::utils::Column&lt; T &gt;</a></li>
 <li>m_hit&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a0c3bd8d5918e344657227a09cd7e39a5">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
-<li>m_id&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5fda3af5ea9ae0ecfb60a61a9e07f5b4">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
+<li>m_hits&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a43e6a9c01b163ab92a0b413bfba52ef5">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a021c30d6db015bb88a70af348a5dd336">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a86404f57e0e0683fc56e0e49321e5e3b">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a35d519d5266c68b696b779b275574ebf">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0d3b7c1d1057f442417c2f8c2a7177c5">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a2b1b4a9ef137e76d39e7a7dcb6cf725d">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aff23db33140aa6a5a2ad36eda77b833d">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
+<li>m_id&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a79877bd387bd891e602adff3f99cb4c5">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ca86e0f8f95ffb6d87ca295e44f14c5">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111">gridfire::ReactionSet</a></li>
 <li>m_index&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e">gridfire::expectations::EngineIndexError</a></li>
+<li>m_indexToSpeciesMap&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a8ff064c9996772281984f88ee492d04a">gridfire::GraphEngine</a></li>
+<li>m_initial_comp&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ac5bf1e4b4ac8435af5739ce970b373d7">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
+<li>m_interpolator&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a874efa5a57427c8afecd0375094da6e9">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#adf203cbae7d7afcd274020b5210b426b">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_interval&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab6215873390f6bedab5c9f83b990b5e0">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></li>
 <li>m_isStale&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382">gridfire::DefinedEngineView</a></li>
+<li>m_J&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afd1053d0827512b6831ee15f14488c20">gridfire::solver::CVODESolverStrategy</a></li>
 <li>m_jac_work&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891">gridfire::GraphEngine</a></li>
 <li>m_jacobianMatrix&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910">gridfire::GraphEngine</a></li>
-<li>m_last_observed_time&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a49268e65b89444c3caf1e69323ce545b">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
-<li>m_last_step_time&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a69d773a1cfe4804876dbf23de1f212c9">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
-<li>m_logger&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66">gridfire::io::SimpleReactionListFileParser</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5">gridfire::Network</a>, <a class="el" href="classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d">gridfire::NetworkPrimingEngineView</a>, <a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac6fcc5b08938b73ff6dac680e5bf28d9">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f">gridfire::screening::WeakScreeningModel</a>, <a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079">gridfire::solver::DirectNetworkSolver</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a6cc605a83b5ac5ae048d1044be284ada">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
+<li>m_last_trigger_time&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a51ac3899010c2790fc98801ffba9407e">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></li>
+<li>m_last_trigger_time_delta&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab93cb25bbebb159a8608a737bd972abd">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></li>
+<li>m_logger&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66">gridfire::io::SimpleReactionListFileParser</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5">gridfire::Network</a>, <a class="el" href="classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d">gridfire::NetworkPrimingEngineView</a>, <a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#abab0ed78925789856ebb119d60c6a53d">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb">gridfire::ReactionSet</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f">gridfire::screening::WeakScreeningModel</a>, <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5867eb99b00815b8b4f710cb48904dbe">gridfire::solver::CVODESolverStrategy</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#afbd9258d65370bbc965e799c82f0e1c0">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a16e9b87a8abb05bb6b5410903eb49e91">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#abe902b2a42a6451f64497e075b0e0b25">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
 <li>m_logManager&#160;:&#160;<a class="el" href="classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16">gridfire::Network</a></li>
+<li>m_LS&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af4a2f003a4c4c06b4b72840f2d445f81">gridfire::solver::CVODESolverStrategy</a></li>
 <li>m_message&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a77c9a660a2748c2e3a1c7e94edad1cf0">gridfire::exceptions::FailedToPartitionEngineError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html#a581527fc03fdd84a8309c147259ec09d">gridfire::exceptions::NetworkResizedError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb">gridfire::exceptions::StaleEngineError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047">gridfire::exceptions::UnableToSetNetworkReactionsError</a>, <a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc">gridfire::expectations::EngineError</a></li>
 <li>m_miss&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a73ca615753553f4a85160bd9f166da5b">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
-<li>m_networkSpecies&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc">gridfire::GraphEngine</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a0eed45bfe5296e4ca9f87b5b53841931">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
+<li>m_misses&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a1714656e907edfcba2d354ff5d7c9ceb">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0a5c2c5aedc779c1535d3839c6a6596e">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#aa1253080cd57cdf0be6780773ce6c73c">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a14b1884a9014df33a1ec90dd3433c0b9">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a00ede9fff51a8318913fd2ed504c1007">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a021c760717efef3fc3b415dee6d4840b">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
+<li>m_N&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a652ba8d1ac36b9713f426eedf2b1ead0">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>m_networkSpecies&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc">gridfire::GraphEngine</a></li>
 <li>m_networkSpeciesMap&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827">gridfire::GraphEngine</a></li>
-<li>m_num_steps&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
+<li>m_num_steps&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab7495898e893640670f49308a105658f">gridfire::solver::CVODESolverStrategy</a></li>
 <li>m_operatorHits&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac18229250c4c160aada96e19325faa29">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
 <li>m_operatorMisses&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
 <li>m_parser&#160;:&#160;<a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500">gridfire::FileDefinedEngineView</a></li>
 <li>m_partitionData&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a50ce19df4c12e22bbcb61422248a4038">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
 <li>m_partitionFunction&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e">gridfire::GraphEngine</a></li>
 <li>m_partitionFunctions&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8">gridfire::partition::CompositePartitionFunction</a></li>
-<li>m_peName&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248">gridfire::reaction::Reaction</a></li>
+<li>m_peName&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a51f658789f34f96e0e6bd42cef5cbfe4">gridfire::reaction::ReaclibReaction</a></li>
 <li>m_precomputedReactions&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3">gridfire::GraphEngine</a></li>
 <li>m_primingSpecies&#160;:&#160;<a class="el" href="classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5">gridfire::NetworkPrimingEngineView</a></li>
-<li>m_products&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e">gridfire::reaction::Reaction</a></li>
+<li>m_product&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aee395d13ed3a515d5c1d69bedffca5de">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_product_a&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2567545c89eb847a15909b02fa0f383e">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_product_z&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ab1be1d3010ff539b8a911506734fd9cf">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_products&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ac350a26bdf19d7c1d20db55a226e6063">gridfire::reaction::ReaclibReaction</a></li>
 <li>m_qse_abundance_cache&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e">gridfire::MultiscalePartitioningEngineView</a></li>
 <li>m_qse_groups&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>m_qse_solve_indices&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4eb11e99dc2a7e038d815bf7c6bd0be8">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
-<li>m_qValue&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b">gridfire::reaction::Reaction</a></li>
-<li>m_rateCoefficients&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72">gridfire::reaction::Reaction</a></li>
-<li>m_rates&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#a81f75f0085f8a5a45169f0b7240c809d">gridfire::reaction::LogicalReaction</a></li>
-<li>m_reactants&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11">gridfire::reaction::Reaction</a></li>
+<li>m_qse_solve_species&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4804c6481c2706b04f48c1bbfd9fd5f8">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
+<li>m_qse_solve_species_index_map&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a23e6ba8dfe37b7f167837296a6654684">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
+<li>m_qValue&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a498c202a259cbc315997ec68a2cb8a59">gridfire::reaction::ReaclibReaction</a></li>
+<li>m_rate_table&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a7a01f956eccd3a0a90dd08984ca3f009">gridfire::rates::weak::WeakRateInterpolator</a></li>
+<li>m_rateCoefficients&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ea3de0412395b7b617c4b71cbc2ab68">gridfire::reaction::ReaclibReaction</a></li>
+<li>m_rates&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#afe1b95bf9d81f7521b9f19bbd1305d01">gridfire::reaction::LogicalReaclibReaction</a></li>
+<li>m_reactant&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aeaceef054714e2a9667986406107ba3a">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_reactant_a&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a37dfb1d460e78e81a6def62e7217e6f8">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_reactant_z&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a3d1b52076e102d07acb7200a7ee99165">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_reactants&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7cf403bc519ce39a1af886432a653826">gridfire::reaction::ReaclibReaction</a></li>
 <li>m_reaction&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a98ed8b450f7868f55e8362a848a4710d">gridfire::GraphEngine::AtomicReverseRate</a></li>
 <li>m_reactionIDMap&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3">gridfire::GraphEngine</a></li>
 <li>m_reactionIndexMap&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd">gridfire::DefinedEngineView</a></li>
-<li>m_reactionNameMap&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a3a4c2448865580001fd3c797b9f56979">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>m_reactions&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#acb7c4f5108b0efeae48ad15598e808c3">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5962968fe478c79250e9d88d80a87600">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>m_reverse&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9">gridfire::reaction::Reaction</a></li>
-<li>m_rho&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44">gridfire::exceptions::StaleEngineTrigger::state</a>, <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63">gridfire::QSECacheKey</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
+<li>m_reactionNameMap&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44">gridfire::ReactionSet</a></li>
+<li>m_reactions&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#ad3b97595871d1f62ee7f4726b601ebef">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe">gridfire::ReactionSet</a></li>
+<li>m_relative&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa4162916f562b4d7ea0205d6f3e6f917">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
+<li>m_resets&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#ae3ff88ddb15d04e798fc03c6c941e312">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a87b6e54f3a0536d20709d7e746ec575d">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#adb9c36fa46a30c28e68c59a7d3bd825d">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#adc6f560d9199455ba98d85eadfe02847">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#acd55d04da377c8bf4af3ea2fcf2f1918">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a3004a10bb89ecd7b2ba6103c9f5d4b96">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad4cc7113574f71905bc93cc40024b4bd">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
+<li>m_reverse&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#af52b42d940f6a09dba5d28898d2b0b1f">gridfire::reaction::ReaclibReaction</a></li>
+<li>m_rho&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44">gridfire::exceptions::StaleEngineTrigger::state</a>, <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63">gridfire::QSECacheKey</a></li>
 <li>m_rhsADFun&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876">gridfire::GraphEngine</a></li>
 <li>m_screeningModel&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210">gridfire::GraphEngine</a></li>
 <li>m_screeningType&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80">gridfire::GraphEngine</a></li>
-<li>m_sourceLabel&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6">gridfire::reaction::Reaction</a></li>
-<li>m_sources&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#a7fe91d24e20ebc76d612f6ad742f476f">gridfire::reaction::LogicalReaction</a></li>
+<li>m_sourceLabel&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7e79437a68947e176b8dd7dcbe27baab">gridfire::reaction::ReaclibReaction</a></li>
+<li>m_sources&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a8c6f12a01c6d1fdeba1f0cc73128731e">gridfire::reaction::LogicalReaclibReaction</a></li>
 <li>m_species_cache&#160;:&#160;<a class="el" href="class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03">PyDynamicEngine</a>, <a class="el" href="class_py_engine.html#a73caaa7606e2cdfd1aa82729a78ebb73">PyEngine</a></li>
 <li>m_speciesIndexMap&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e">gridfire::DefinedEngineView</a></li>
 <li>m_speciesToIndexMap&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7">gridfire::GraphEngine</a></li>
 <li>m_state&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a7f9fa2e34da3772714723ef7d5083be5">gridfire::exceptions::StaleEngineTrigger</a></li>
+<li>m_stdout_logging_enabled&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af3e470b5a6f982c107785c64b169a992">gridfire::solver::CVODESolverStrategy</a></li>
 <li>m_stiff&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a697cb49bebc8d0659eb791500c451c67">gridfire::approx8::Approx8Network</a>, <a class="el" href="classgridfire_1_1_network.html#aefe364ae5af783e19e7b93bfd475566e">gridfire::Network</a></li>
 <li>m_stoichiometryMatrix&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24">gridfire::GraphEngine</a></li>
+<li>m_sun_ctx&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ac57a4f62d95d769c379470e680e6882d">gridfire::solver::CVODESolverStrategy</a></li>
 <li>m_t&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a352cd33629e63286808df617d36cb70b">gridfire::exceptions::StaleEngineTrigger::state</a></li>
-<li>m_T9&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963">gridfire::exceptions::StaleEngineTrigger::state</a>, <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7">gridfire::QSECacheKey</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
+<li>m_T9&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963">gridfire::exceptions::StaleEngineTrigger::state</a>, <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7">gridfire::QSECacheKey</a></li>
+<li>m_threshold&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#aeac341c1e854d561a29aa39ad306d5d7">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ab7d86e5c89a848cf238141393fe3a8de">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
+<li>m_timestep_window&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ae18e08a0bd72b68605d64e4d84355f79">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
 <li>m_tMax&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a6fadf388f07c160f1887a3cb72eaa869">gridfire::approx8::Approx8Network</a></li>
 <li>m_total_steps&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#ac1cddf0f2955d4282afcf4a90a2de9c0">gridfire::exceptions::StaleEngineTrigger::state</a></li>
+<li>m_type&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae78d2a9b20c22a6ad624f4d968cbf639">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a92c3590161c63c6ed4e7650d2b7beee3">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_updates&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a7f88c1139e1b05baed44614104d601b4">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#ab0a33f49be02d34b27f75edf75dbc06d">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#ae4830ed152643770b0888b040475b000">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#af595a5daab0f5b3ffc450c6de6737517">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a4885bdcc719a0f8c8394905893739b96">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab80799eb7c80b3b20c1a7e7f9e1f5030">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a25f6ac369c590a8370270bdc70545171">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
 <li>m_usePrecomputation&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de">gridfire::GraphEngine</a></li>
 <li>m_useReverseReactions&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc">gridfire::GraphEngine</a></li>
 <li>m_view&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
-<li>m_Y&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf">gridfire::exceptions::StaleEngineTrigger::state</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a">gridfire::QSECacheKey</a></li>
+<li>m_weak_network&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a8169adef9b4b3c7552c7a8fdc945cf6f">gridfire::rates::weak::WeakReactionMap</a></li>
+<li>m_weakRateInterpolator&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a9ac5893030802b0b846552949e866340">gridfire::GraphEngine</a></li>
+<li>m_windowSize&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa03c13813065f720cf698c240f07d559">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
+<li>m_Y&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf">gridfire::exceptions::StaleEngineTrigger::state</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a">gridfire::QSECacheKey</a>, <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aae19c1ec467051404a7bf1d4c7066c22">gridfire::solver::CVODESolverStrategy</a></li>
 <li>m_y&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#abf9f13ff532917ddac4a7d987698836d">gridfire::approx8::Approx8Network</a></li>
-<li>m_Y_full_initial&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3bc901d2d8234d1f61e94d0fe0777f7d">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
 <li>m_Y_scale&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
-<li>make_key()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a99c80e2f4ba36e88e08e2abd650a08fb">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
+<li>m_YErr&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a0717afcde6fdb71b12490bbcadb5fdb4">gridfire::solver::CVODESolverStrategy</a></li>
+<li>m_z&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a292dfe5fdfd3b90a36906f5f609a4c1c">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></li>
+<li>make_key()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0e75ec9b97529783e07953aaf7d70f68">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
 <li>mapCulledToFull()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1">gridfire::AdaptiveEngineView</a></li>
 <li>mapCulledToFullReactionIndex()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101">gridfire::AdaptiveEngineView</a></li>
 <li>mapCulledToFullSpeciesIndex()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8">gridfire::AdaptiveEngineView</a></li>
@@ -204,11 +240,16 @@ $(function(){initNavTree('functions_m.html',''); initResizable(true); });
 <li>massFractionChanges&#160;:&#160;<a class="el" href="structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7">gridfire::PrimingReport</a></li>
 <li>mean_timescale&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
 <li>MESANetworkFileParser()&#160;:&#160;<a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c">gridfire::io::MESANetworkFileParser</a></li>
+<li>MeV2Erg&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ae527298ffcdeb0b7b4089eeed4ddb58d">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>MeVgRelation&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab60f42677de82f3aab77d2af846c2ffd">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>MeVPerGraph&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a57273916131b68d1aed6e16d85667427">gridfire::rates::weak::WeakReaction::constants</a></li>
 <li>MIDDLE&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
 <li>mIon&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#a928b7810cb2993d59d40aa73c2faef18">gridfire::approx8::Approx8Net</a></li>
 <li>miss()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac55fb580dd4b9763cefe4612555b03f3">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
 <li>misses()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5df4f2c27e9eaa781c972a8c9b595787">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
 <li>MolarAbundance()&#160;:&#160;<a class="el" href="structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65">gridfire::NetIn</a></li>
+<li>mu_e&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ac08d42071950006ccf3c438253ef9ee9">gridfire::rates::weak::RateDataRow</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a4a1cbc93d5e197a69a5a29a8cabc6498">gridfire::rates::weak::WeakReactionEntry</a></li>
+<li>mue_axis&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a82cc218ce48dcb835d07422dad927a5a">gridfire::rates::weak::IsotopeGrid</a></li>
 <li>MultiscalePartitioningEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f">gridfire::MultiscalePartitioningEngineView</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_n.html b/docs/html/functions_n.html
index 6c091e43..c21dd9d1 100644
--- a/docs/html/functions_n.html
+++ b/docs/html/functions_n.html
@@ -103,17 +103,23 @@ $(function(){initNavTree('functions_n.html',''); initResizable(true); });
 
 <h3><a id="index_n" name="index_n"></a>- n -</h3><ul>
 <li>Na&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html#a5ccc874d6704615e0ce54c14dc67699d">gridfire::GraphEngine::constants</a></li>
+<li>name()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#ab78539e5cd88194ab9e98434793eae3f">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a4a834d24286f9204995bf78fb69f35dc">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#acc3bd2938f7746997fb1d255681d8b20">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a062af4f567dc48c088f1fcfb64cc79ec">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a594893c029f044be3119118808470f7a">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a87fc9fe6bd8762f148c858452ec30043">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a290e5643eea08726d2fd44a1cd5617d0">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html#a1f27dd6d5cca43956812ec78cfb7be2d">gridfire::trigger::TriggerResult</a></li>
 <li>Network()&#160;:&#160;<a class="el" href="classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55">gridfire::Network</a></li>
 <li>NetworkPrimingEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177">gridfire::NetworkPrimingEngineView</a></li>
 <li>NetworkResizedError()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html#a80c0adb088e8083309591d24051b056b">gridfire::exceptions::NetworkResizedError</a></li>
 <li>NetworkSolverStrategy()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></li>
-<li>networkSpecies&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#afee439e7b59805a6b4dcffffa2b0e6e3">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
+<li>networkSpecies&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a41a5bc46358cb59373f62c791e1bc29c">gridfire::solver::CVODESolverStrategy::CVODEUserData</a>, <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a75d7e32c9df3d8a047069fe2d64cd089">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
+<li>neutronMassG&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a2d6c6d4eb9b54c050c266298611c1e44">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>neutronMassMeV&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a0629ea0e5d51166e400696a358b0045e">gridfire::rates::weak::WeakReaction::constants</a></li>
 <li>nIso&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#a31928b4041479da6515a90569322fc02">gridfire::approx8::Approx8Net</a></li>
 <li>normalized_g_values&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aea71e9198606e0ba393321178f988fcc">gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData</a>, <a class="el" href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a64c1cef58c1bdeab1fcc7f9a30a71609">gridfire::partition::record::RauscherThielemannPartitionDataRecord</a></li>
+<li>NotTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a4828599aae5ff37f4c82e51fe192bed3">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></li>
 <li>nuclearEnergyGenerationRate&#160;:&#160;<a class="el" href="structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008">gridfire::StepDerivatives&lt; T &gt;</a></li>
-<li>num_species()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97">gridfire::reaction::Reaction</a></li>
-<li>num_steps&#160;:&#160;<a class="el" href="structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6">gridfire::NetOut</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a85eab3fb76bcef5044b2be6cc60a46df">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
+<li>num_species()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1210917ca1727ea474bb606cf8279edb">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a348aae35a6c82194ef5387278419e0e6">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a9205126955ad38f56e8aca3112bc150a">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ae2a1b0395ac127c792a8049cd0bcc249">gridfire::reaction::Reaction</a></li>
+<li>num_steps&#160;:&#160;<a class="el" href="structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6">gridfire::NetOut</a>, <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a51e86d2721053055d8479662b864e367">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
+<li>numMisses()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#addfd61f8cb234881f535fb8f4d618d74">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae7776f4a526db3245e64a74a3b0172d3">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a2f9b0d6a6ac54f6371c5a208c06826ea">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a0b3a7f45604dbb27e832d9559dd20997">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0e1ad148f9f3232992a4b16e440c249a">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a273eb8a3e80d1235d2b3f252e55c5b50">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a94bb1de08a5ff55e1874f595f8c8965c">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
 <li>numSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c">gridfire::exceptions::StaleEngineTrigger</a></li>
+<li>numTriggers()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#afffb4281569963183d7db3ed1568eb3a">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a7e5568c9d7799b7f80ad0d3efe2cd143">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#ae2d27d72af9e1fbf711a58e4583b43a3">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#afc7d3eae8306ee383d76997ac3803327">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a32980aaf6d9c7632c024b4b74b1d9e70">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a34d285584ea96f71b99eefad8c738296">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad2a7c2567b100f97a024f65818ecefed">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
 <li>nVar&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#a7218aa9b3dbe7c6eca52119e115692db">gridfire::approx8::Approx8Net</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_o.html b/docs/html/functions_o.html
index 2bfdbf7c..ef781843 100644
--- a/docs/html/functions_o.html
+++ b/docs/html/functions_o.html
@@ -102,18 +102,19 @@ $(function(){initNavTree('functions_o.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
 
 <h3><a id="index_o" name="index_o"></a>- o -</h3><ul>
-<li>observe()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a226b007bfc9960b5c0bb7b88b4f122da">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
+<li>OffDiagonalTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a6dc334b85ffb822880c6740dc457ea52">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></li>
 <li>operator std::string()&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html#ad8ba0f62a2da0d93aba429181e7e6f84">gridfire::expectations::StaleEngineError</a></li>
-<li>operator!=()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a">gridfire::MultiscalePartitioningEngineView::QSEGroup</a>, <a class="el" href="classgridfire_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#aac76ec883b4ecebb2a94b2485dae7105">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>operator()()&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa">gridfire::approx8::Jacobian</a>, <a class="el" href="structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0">gridfire::approx8::ODE</a>, <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aec8c0a0b2fbb71cebb40c263f64385b3">gridfire::solver::DirectNetworkSolver::RHSManager</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3">std::hash&lt; gridfire::QSECacheKey &gt;</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html#a4b76e7119050266952ded94d6f0544cb">std::hash&lt; gridfire::reaction::LogicalReactionSet &gt;</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9">std::hash&lt; gridfire::reaction::Reaction &gt;</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921">std::hash&lt; gridfire::reaction::ReactionSet &gt;</a></li>
+<li>operator!=()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a">gridfire::MultiscalePartitioningEngineView::QSEGroup</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8b6008e0f629329bfc62256f4f081b77">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8">gridfire::ReactionSet</a></li>
+<li>operator()()&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa">gridfire::approx8::Jacobian</a>, <a class="el" href="structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0">gridfire::approx8::ODE</a>, <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3">std::hash&lt; gridfire::QSECacheKey &gt;</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9">std::hash&lt; gridfire::reaction::Reaction &gt;</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921">std::hash&lt; gridfire::reaction::ReactionSet &gt;</a></li>
 <li>operator&lt;()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
-<li>operator&lt;&lt;&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7">gridfire::expectations::EngineError</a>, <a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903">gridfire::expectations::EngineIndexError</a>, <a class="el" href="structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b">gridfire::NetOut</a>, <a class="el" href="structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736">gridfire::PrimingReport</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#a10cbea11653524dae2f7eafb5c22c90f">gridfire::reaction::LogicalReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8">gridfire::Reaction</a>, <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f">gridfire::reaction::RateCoefficientSet</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a47265467dbf2c324ce3e4c85ebbaa6a7">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>operator=()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac510dce14a6033551318c0c7b241f3c8">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>operator==()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88">gridfire::MultiscalePartitioningEngineView::QSEGroup</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81">gridfire::QSECacheKey</a>, <a class="el" href="classgridfire_1_1_reaction.html#ac426457cf0a54a15b206549422083bac">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ac426457cf0a54a15b206549422083bac">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a128660f5fbc67054f73811ed2982d24d">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
+<li>operator&lt;&lt;&#160;:&#160;<a class="el" href="structgridfire_1_1_energy_derivatives.html#aa974abdff7fe09c9aea3fcf4ae13b652">gridfire::EnergyDerivatives</a>, <a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7">gridfire::expectations::EngineError</a>, <a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903">gridfire::expectations::EngineIndexError</a>, <a class="el" href="structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b">gridfire::NetOut</a>, <a class="el" href="structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736">gridfire::PrimingReport</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a5a2525ca7e7b2c812b1f67b3b0114aaf">gridfire::rates::weak::WeakReactionEntry</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a495ca800cc1dd224ce2a821a825afafd">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8">gridfire::Reaction</a>, <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f">gridfire::reaction::RateCoefficientSet</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae24ad1e38daab536aec6ac72c67e8615">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20">gridfire::ReactionSet</a></li>
+<li>operator=()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a">gridfire::ReactionSet</a>, <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af500df838024c82724eaf7fe1cb9b8e8">gridfire::solver::CVODESolverStrategy</a></li>
+<li>operator==()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88">gridfire::MultiscalePartitioningEngineView::QSEGroup</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81">gridfire::QSECacheKey</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae7c930525db447e39b4de18fbc1251a8">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135">gridfire::ReactionSet</a></li>
 <li>operator&gt;()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
-<li>operator[]()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a638067a3e55ec2a422206055881aaaad">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
+<li>operator[]()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b">gridfire::ReactionSet</a></li>
 <li>operators&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
 <li>operatorsNameMap&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afb930f4472f4bb713f0b606194762c6f">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
+<li>OrTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#aaf4f8a090bdd10eeba0b7849fa8ed888">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></li>
 <li>OutputType&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_p.html b/docs/html/functions_p.html
index 56b69c66..211f7521 100644
--- a/docs/html/functions_p.html
+++ b/docs/html/functions_p.html
@@ -102,19 +102,22 @@ $(function(){initNavTree('functions_p.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
 
 <h3><a id="index_p" name="index_p"></a>- p -</h3><ul>
+<li>pack_isotope_id()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ac73e9476c89ec7066999b0986bc0d9c1">gridfire::rates::weak::WeakRateInterpolator</a></li>
 <li>parse()&#160;:&#160;<a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf">gridfire::io::NetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8">gridfire::io::SimpleReactionListFileParser</a>, <a class="el" href="class_py_network_file_parser.html#afe09d1e5b07110e62cf4c6ec713cff54">PyNetworkFileParser</a></li>
-<li>partitionByTimescale()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ad4d29ee55f89384807616d1068797067">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>partitionNetwork()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>peName()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97">gridfire::reaction::Reaction</a></li>
+<li>partitionByTimescale()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>partitionNetwork()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c327a40d7c667043826002975baa2b4">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>peName()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#af775f97f4d5e144e33bc6e0ba58a5851">gridfire::reaction::ReaclibReaction</a></li>
 <li>populateReactionIDMap()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567">gridfire::GraphEngine</a></li>
 <li>populateSpeciesToIndexMap()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391">gridfire::GraphEngine</a></li>
 <li>precomputeNetwork()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd">gridfire::GraphEngine</a></li>
 <li>primedComposition&#160;:&#160;<a class="el" href="structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb">gridfire::PrimingReport</a></li>
 <li>primeEngine()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878">PyDynamicEngine</a></li>
 <li>product_powers&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3ce63aa3ad88568f4eb0d3ca2414209f">gridfire::GraphEngine::PrecomputedReaction</a></li>
-<li>product_species()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c">gridfire::reaction::Reaction</a></li>
-<li>products()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02">gridfire::reaction::Reaction</a></li>
+<li>product_species()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a5c60feacb0ac48b35323d9f688315316">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#ac2306d841bad605b7c9ae104397cec0f">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a67c8fa4d5929c7a8cbca9b3d9dd2b704">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0d16572ae2b664374d32ee6c4e22123a">gridfire::reaction::Reaction</a></li>
+<li>products()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aed0ea28ed3ba96a9f86aa9db947ec01c">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#ac2918935929030e8d218dc8d107a78f9">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a5f563b99bb550d5bafa2a989502de019">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a3d7451045d8df41ea98b5e419e0e5ab0">gridfire::reaction::Reaction</a></li>
 <li>products_str&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#af1b1d3b0308d965ef0697b247fcf9082">gridfire::reaclib::ReactionRecord</a></li>
+<li>protonMassG&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abdb3124f6ef5ea294f402d30717fa208">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>protonMassMeV&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8a780d3937e60794f007ec65fe866a56">gridfire::rates::weak::WeakReaction::constants</a></li>
 <li>PyDynamicNetworkSolverStrategy()&#160;:&#160;<a class="el" href="class_py_dynamic_network_solver_strategy.html#a4a3fce2a9853e7192354834bf2b36159">PyDynamicNetworkSolverStrategy</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_q.html b/docs/html/functions_q.html
index 5e56cb09..03e64581 100644
--- a/docs/html/functions_q.html
+++ b/docs/html/functions_q.html
@@ -104,7 +104,8 @@ $(function(){initNavTree('functions_q.html',''); initResizable(true); });
 <h3><a id="index_q" name="index_q"></a>- q -</h3><ul>
 <li>QSECacheKey()&#160;:&#160;<a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#a3078528fc69b8e687448d3108a216c03">gridfire::QSECacheKey</a></li>
 <li>QSEPartition&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>qValue&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#aeeb8a1e078a27420e398663825cce644">gridfire::reaclib::ReactionRecord</a>, <a class="el" href="classgridfire_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8">gridfire::reaction::Reaction</a></li>
+<li>queryValue&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a3eb0be2063f7333994a026a569ae5568">gridfire::rates::weak::BoundsErrorInfo</a></li>
+<li>qValue()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#afedb724bf9f1c8fc91d853f2bedb10cb">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#aeeb8a1e078a27420e398663825cce644">gridfire::reaclib::ReactionRecord</a>, <a class="el" href="classgridfire_1_1_reaction.html#a11c714febaf818f1d4d6c19a064d707e">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae47931948f12816eb890c0db4fff4d68">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c">gridfire::reaction::Reaction</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_r.html b/docs/html/functions_r.html
index 5811ad1a..643085ae 100644
--- a/docs/html/functions_r.html
+++ b/docs/html/functions_r.html
@@ -102,27 +102,31 @@ $(function(){initNavTree('functions_r.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
 
 <h3><a id="index_r" name="index_r"></a>- r -</h3><ul>
-<li>rateCoefficients()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e">gridfire::reaction::Reaction</a></li>
+<li>rateCoefficients()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#adfed51cf788a7ed4770cbd5945ddab2f">gridfire::reaction::ReaclibReaction</a></li>
 <li>RauscherThielemannPartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
+<li>ReaclibReaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a264112a230817a6080c770686e5bcc01">gridfire::reaction::ReaclibReaction</a></li>
 <li>reactant_powers&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275">gridfire::GraphEngine::PrecomputedReaction</a></li>
-<li>reactant_species()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923">gridfire::reaction::Reaction</a></li>
-<li>reactants()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b">gridfire::reaction::Reaction</a></li>
+<li>reactant_species()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aae06ff559026e3ce242a42cdd888c5a0">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad85ca288289b25d482cbb8e3ff270028">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a4be8440aa7e79eab1d44b5d83bcdab79">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a82c14096308cdc9126ab6d9667febcd2">gridfire::reaction::Reaction</a></li>
+<li>reactants()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1362d46630f30203027093e35883d1b1">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad095aba46860fec0e68386bf04f7f142">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a0c533797f18c2fe4945f1afb3fb06d5d">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ac7b08c61cdc97268b9442afec4d08dad">gridfire::reaction::Reaction</a></li>
 <li>reactants_str&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#a67afc513db8dbcc43d79733e22ca8d39">gridfire::reaclib::ReactionRecord</a></li>
-<li>Reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c">gridfire::reaction::Reaction</a></li>
 <li>reaction_index&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497">gridfire::GraphEngine::PrecomputedReaction</a></li>
-<li>reactionPtr&#160;:&#160;<a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a3bb21f20df8115d37108cf3c3be3bc6f">gridfire::AdaptiveEngineView::ReactionFlow</a></li>
+<li>reactionPtr&#160;:&#160;<a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#afc894db76a799be17be91130ff3ae6d9">gridfire::AdaptiveEngineView::ReactionFlow</a></li>
+<li>ReactionSet()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de">gridfire::ReactionSet</a></li>
 <li>rebuild()&#160;:&#160;<a class="el" href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490">gridfire::GraphEngine</a>, <a class="el" href="class_py_dynamic_engine.html#a3d30a9116825ab2c5c209bc2712126bc">PyDynamicEngine</a></li>
-<li>recordADTape()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889">gridfire::GraphEngine</a></li>
-<li>remove_reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a89c4c5af12aef7fbfc24316c88237e22">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>rescueEdgeSpeciesDestructionChannel()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f">gridfire::AdaptiveEngineView</a></li>
-<li>RescueSet&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a4ff60b5214ec0bdaf683feb6615573a5">gridfire::AdaptiveEngineView</a></li>
+<li>recordADTape()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#ab29ef3225c8fcda012b10765df064b63">gridfire::GraphEngine</a></li>
+<li>recordEpsADTape()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a16b8cd1b0e19b4d4519596a4e22eaf5c">gridfire::GraphEngine</a></li>
+<li>remove_reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd">gridfire::ReactionSet</a></li>
+<li>rescueEdgeSpeciesDestructionChannel()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a0439f464865b4c01bad0f6be6055c3fc">gridfire::AdaptiveEngineView</a></li>
+<li>RescueSet&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac674338ddcbae4c33dd84b0441631806">gridfire::AdaptiveEngineView</a></li>
 <li>reserveJacobianMatrix()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5">gridfire::GraphEngine</a></li>
-<li>rev_sparse_jac()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4">gridfire::GraphEngine::AtomicReverseRate</a></li>
-<li>reverse()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e">gridfire::GraphEngine::AtomicReverseRate</a>, <a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd">gridfire::reaclib::ReactionRecord</a></li>
+<li>reset()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a2436d8643911ade907e03fb29531ceaa">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#abf218d255bde157540b51cd6a54f6eb1">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#afe337517b77e5433d92ded3a64565141">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#ab42043e55c81bac5d3f981bc139579de">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a9b782cbf033ed2023da6b2d55dcefc4e">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#af4034fa431e6c88fd05c50cce31b2fa0">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a0fe6af73b11b820561bd4e5552890d4e">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
+<li>rev_sparse_jac()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4">gridfire::GraphEngine::AtomicReverseRate</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae9d61bdda761da89733408c232d7220e">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></li>
+<li>reverse()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e">gridfire::GraphEngine::AtomicReverseRate</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#aad13654ea15547c2c95035c3b7937d58">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a>, <a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd">gridfire::reaclib::ReactionRecord</a></li>
 <li>reverse_symmetry_factor&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6bcfe2230dd54b088180d34389266b07">gridfire::GraphEngine::PrecomputedReaction</a></li>
-<li>rho&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ad565c013b373f312f0f5157f11d02cef">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
+<li>rho&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#afdc510f8160693806737c4ab517058b8">gridfire::solver::CVODESolverStrategy::CVODEUserData</a>, <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a25afbc9f8a907304992e144dfa3529">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
 <li>rho_tol&#160;:&#160;<a class="el" href="structgridfire_1_1_q_s_e_cache_config.html#a57b7ca68463aa9b78007e5cf35ebf7ce">gridfire::QSECacheConfig</a></li>
-<li>RHSManager()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a4ba187f1a0deca0a82ac3c9a14883855">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
+<li>rhoYe_axis&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a30362f5bb497ae74cf6a10fd701273a0">gridfire::rates::weak::IsotopeGrid</a></li>
+<li>RowDataTable&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#afd3e0e1c5edaf12609b5fc81c379e3e5">gridfire::rates::weak::WeakRateInterpolator</a></li>
 <li>rpName&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#a523b7cfb0a6d8ddccd785aef2f425ad1">gridfire::reaclib::ReactionRecord</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_rela.html b/docs/html/functions_rela.html
index 1cb1862d..b0ea3d79 100644
--- a/docs/html/functions_rela.html
+++ b/docs/html/functions_rela.html
@@ -100,7 +100,7 @@ $(function(){initNavTree('functions_rela.html',''); initResizable(true); });
 
 <div class="contents">
 <div class="textblock">Here is a list of all related symbols with links to the classes they belong to:</div><ul>
-<li>operator&lt;&lt;&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7">gridfire::expectations::EngineError</a>, <a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903">gridfire::expectations::EngineIndexError</a>, <a class="el" href="structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b">gridfire::NetOut</a>, <a class="el" href="structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736">gridfire::PrimingReport</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#a10cbea11653524dae2f7eafb5c22c90f">gridfire::reaction::LogicalReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8">gridfire::Reaction</a>, <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f">gridfire::reaction::RateCoefficientSet</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a47265467dbf2c324ce3e4c85ebbaa6a7">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
+<li>operator&lt;&lt;&#160;:&#160;<a class="el" href="structgridfire_1_1_energy_derivatives.html#aa974abdff7fe09c9aea3fcf4ae13b652">gridfire::EnergyDerivatives</a>, <a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7">gridfire::expectations::EngineError</a>, <a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903">gridfire::expectations::EngineIndexError</a>, <a class="el" href="structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b">gridfire::NetOut</a>, <a class="el" href="structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736">gridfire::PrimingReport</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a5a2525ca7e7b2c812b1f67b3b0114aaf">gridfire::rates::weak::WeakReactionEntry</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a495ca800cc1dd224ce2a821a825afafd">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8">gridfire::Reaction</a>, <a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f">gridfire::reaction::RateCoefficientSet</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae24ad1e38daab536aec6ac72c67e8615">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20">gridfire::ReactionSet</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_s.html b/docs/html/functions_s.html
index 54a06c8d..41e12065 100644
--- a/docs/html/functions_s.html
+++ b/docs/html/functions_s.html
@@ -102,28 +102,32 @@ $(function(){initNavTree('functions_s.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
 
 <h3><a id="index_s" name="index_s"></a>- s -</h3><ul>
-<li>seed_indices&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
+<li>seed_species&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af2d7e09d940e0fb3ca24a4bc8ec01031">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
 <li>selectPartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b">gridfire::partition::CompositePartitionFunction</a></li>
-<li>set_callback()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a6bb0738eef5669b3ad83a3c65a0d1e96">gridfire::solver::DirectNetworkSolver</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a4d97ee85933d5e5f90d4194bb021a1dc">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>, <a class="el" href="class_py_dynamic_network_solver_strategy.html#a112a7babc03858a69d6994a7155370d3">PyDynamicNetworkSolverStrategy</a></li>
+<li>set_callback()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a77638ef3d2279009e5a57bbd3f0eb63b">gridfire::solver::CVODESolverStrategy</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a4d97ee85933d5e5f90d4194bb021a1dc">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>, <a class="el" href="class_py_dynamic_network_solver_strategy.html#a112a7babc03858a69d6994a7155370d3">PyDynamicNetworkSolverStrategy</a></li>
+<li>set_stdout_logging_enabled()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a46dacb6eb075f2aadac0e56972deeaa3">gridfire::solver::CVODESolverStrategy</a></li>
 <li>setFormat()&#160;:&#160;<a class="el" href="classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4">gridfire::Network</a></li>
-<li>setNetworkReactions()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#acb5fa7f03cd89b8c1b6b9ffdf3abb12e">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6">PyDynamicEngine</a></li>
+<li>setNetworkReactions()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#adedc8547568d643473bdfcc86040b488">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a49025489901e22a20cdf99b455ff2ff0">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a52288e2629609c8438a3c9bc3f910016">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#af99f5e4871808188d00379c1c35868fe">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#af469cba3be850d53f659ec173f0eb4e4">PyDynamicEngine</a></li>
 <li>setPrecomputation()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1">gridfire::GraphEngine</a></li>
 <li>setScreeningModel()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac">PyDynamicEngine</a></li>
 <li>setStiff()&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#aefed972081514c29cdaaa1efd857ad8d">gridfire::approx8::Approx8Network</a>, <a class="el" href="classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe">gridfire::Network</a></li>
 <li>setUseReverseReactions()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197">gridfire::GraphEngine</a></li>
 <li>SimpleReactionListFileParser()&#160;:&#160;<a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993">gridfire::io::SimpleReactionListFileParser</a></li>
-<li>size()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#afa41050855b842c63db16c94d2e9b897">gridfire::reaction::LogicalReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>solveQSEAbundances()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c5fcb8e3396d74359fd601554c9ffa9">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>sourceLabel()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0">gridfire::Reaction</a></li>
-<li>sources()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#add094eda0e71126f8443698d7f3317f4">gridfire::reaction::LogicalReaction</a></li>
-<li>species_indices&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
+<li>SimulationTimeTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a235f84a37370a1ca2226fb881b4051c7">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></li>
+<li>size()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a4c58951d9f7ab252717c226b0da80a9d">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf">gridfire::ReactionSet</a></li>
+<li>solveQSEAbundances()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a40ce2c18063cd56cffd58419b9ae96bf">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>solver_instance&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ad7f3eb9caae25ef25357c41c23d6b392">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></li>
+<li>sourceLabel()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a96d4ab87de02e9b0be3c248e2e955b4b">gridfire::reaction::ReaclibReaction</a></li>
+<li>sources()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad4979f437dc787a5475c3a029804ed99">gridfire::reaction::LogicalReaclibReaction</a></li>
+<li>speedOfLight&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a016c3e02f622e21073f9110707177b76">gridfire::rates::weak::WeakReaction::constants</a></li>
 <li>StaleEngineError()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50">gridfire::exceptions::StaleEngineError</a>, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10">gridfire::expectations::StaleEngineError</a></li>
 <li>StaleEngineTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d">gridfire::exceptions::StaleEngineTrigger</a></li>
 <li>staleType&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590">gridfire::expectations::StaleEngineError</a></li>
-<li>state&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adab4b53a94b935f89f799bd5a67847a2">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
+<li>state&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#aaae3c42b9172be4d501f022e67f5a6f6">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
 <li>status&#160;:&#160;<a class="el" href="structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d">gridfire::PrimingReport</a></li>
+<li>StepDerivatives()&#160;:&#160;<a class="el" href="structgridfire_1_1_step_derivatives.html#a26deeb236e77eddb0119ad368a5d8f1c">gridfire::StepDerivatives&lt; T &gt;</a></li>
 <li>stoichiometric_coefficients&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c">gridfire::GraphEngine::PrecomputedReaction</a></li>
-<li>stoichiometry()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac">gridfire::Reaction</a></li>
+<li>stoichiometry()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a8bf7dc26d9f1375625df99bceba08a44">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a57b2695d152360a6ba08776cc760e3a1">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ad49f4cad024db72c966d949c75f1ce4d">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a55b7f61d9bde45f2ca485c1b07a05950">gridfire::Reaction</a></li>
 <li>success&#160;:&#160;<a class="el" href="structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3">gridfire::PrimingReport</a></li>
 <li>supports()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="class_py_partition_function.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8">PyPartitionFunction</a></li>
 <li>symmetry_factor&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e">gridfire::GraphEngine::PrecomputedReaction</a></li>
diff --git a/docs/html/functions_t.html b/docs/html/functions_t.html
index 9de8af69..fbc162cc 100644
--- a/docs/html/functions_t.html
+++ b/docs/html/functions_t.html
@@ -102,18 +102,21 @@ $(function(){initNavTree('functions_t.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
 
 <h3><a id="index_t" name="index_t"></a>- t -</h3><ul>
-<li>t&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ad49305586fdc676f96161e91c6b863dd">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
-<li>T9&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a838fdd3dd8beac8ca7e735921230ea2d">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
+<li>t&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a0b39f0d207181840efacb64417b492ae">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
+<li>T9&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a549f4c9266722314f61d668d8507145c">gridfire::rates::weak::WeakReactionEntry</a>, <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a0b27605ac3211a1805d7910c899bbcce">gridfire::solver::CVODESolverStrategy::CVODEUserData</a>, <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a25743a21ed801ed4288309f35dc9a289">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
+<li>t9&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a2344c046a615bc6ff07327d6bcfe074b">gridfire::rates::weak::RateDataRow</a></li>
+<li>t9_axis&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a99da523669d85aa0a628d35a077d541c">gridfire::rates::weak::IsotopeGrid</a></li>
 <li>T9_high&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a750aa8cd8aa8b8da6d1f0db1cc66233d">gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints</a></li>
 <li>T9_low&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a48e170f77812fdbc06cff18267b241ca">gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints</a></li>
 <li>T9_tol&#160;:&#160;<a class="el" href="structgridfire_1_1_q_s_e_cache_config.html#af4dca2b24aa364fbbf6e99eb26774f40">gridfire::QSECacheConfig</a></li>
 <li>temperature()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9">gridfire::exceptions::StaleEngineTrigger</a>, <a class="el" href="structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be">gridfire::NetIn</a></li>
-<li>TemplatedReactionSet()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a54c8cd7c34564277fe28eefc623f666e">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>TimestepCallback&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a171bd0c8c292da79ed41f6653fdd47df">gridfire::solver::DirectNetworkSolver</a></li>
-<li>TimestepContext()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#aea1385260976dff133404db5b453ba98">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
+<li>TimestepCallback&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a89c537c2f34ba3e202374304b7e5990a">gridfire::solver::CVODESolverStrategy</a></li>
+<li>TimestepCollapseTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a171e6dee7f7d8275b3e8875eaeb0850d">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
+<li>TimestepContext()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a406b36ce5f192c855eb3c8dcf0fde0bd">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
 <li>tMax&#160;:&#160;<a class="el" href="structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1">gridfire::NetIn</a></li>
+<li>toString()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a165b68f0ebb30cda5ffaafa7c0f27617">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
 <li>totalSteps()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408">gridfire::exceptions::StaleEngineTrigger</a></li>
-<li>type&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897">gridfire::expectations::EngineError</a>, <a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#ab0c67985a972707eac0ebc64417dfb97">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3aa478acf12e09b6dd268f744071b2a0">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="class_py_partition_function.html#a07f4d0ff83822dd2800897161d2a3717">PyPartitionFunction</a></li>
+<li>type&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897">gridfire::expectations::EngineError</a>, <a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#ab0c67985a972707eac0ebc64417dfb97">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3aa478acf12e09b6dd268f744071b2a0">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a086720ca534bc4c63d9341995e2f87bd">gridfire::rates::weak::InterpolationError</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aade329265a26bdc005c0793ba7a36ab2">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#ad0bb77849bda4934472675e196af87c8">gridfire::rates::weak::WeakReactionEntry</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#acbfa2d4e23dff6641be21cc1e754be15">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a3c0fbdd07f9a837bd031c5bdc58e0e8f">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a186856dc2ce85d8cc4db43c7164b6afa">gridfire::Reaction</a>, <a class="el" href="class_py_partition_function.html#a07f4d0ff83822dd2800897161d2a3717">PyPartitionFunction</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_type.html b/docs/html/functions_type.html
index 2b92a161..7897ecec 100644
--- a/docs/html/functions_type.html
+++ b/docs/html/functions_type.html
@@ -107,8 +107,9 @@ $(function(){initNavTree('functions_type.html',''); initResizable(true); });
 <li>LogManager&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de">gridfire::io::SimpleReactionListFileParser</a></li>
 <li>OutputType&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
 <li>QSEPartition&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>RescueSet&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a4ff60b5214ec0bdaf683feb6615573a5">gridfire::AdaptiveEngineView</a></li>
-<li>TimestepCallback&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a171bd0c8c292da79ed41f6653fdd47df">gridfire::solver::DirectNetworkSolver</a></li>
+<li>RescueSet&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac674338ddcbae4c33dd84b0441631806">gridfire::AdaptiveEngineView</a></li>
+<li>RowDataTable&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#afd3e0e1c5edaf12609b5fc81c379e3e5">gridfire::rates::weak::WeakRateInterpolator</a></li>
+<li>TimestepCallback&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a89c537c2f34ba3e202374304b7e5990a">gridfire::solver::CVODESolverStrategy</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_u.html b/docs/html/functions_u.html
index e5327917..70a49117 100644
--- a/docs/html/functions_u.html
+++ b/docs/html/functions_u.html
@@ -103,10 +103,11 @@ $(function(){initNavTree('functions_u.html',''); initResizable(true); });
 
 <h3><a id="index_u" name="index_u"></a>- u -</h3><ul>
 <li>u&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html#a3597bc632a5dd50aaa0044d8c18ca423">gridfire::GraphEngine::constants</a></li>
+<li>u_to_MeV&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab7d46e02bb7264ff3aada6b3997b2ab1">gridfire::rates::weak::WeakReaction::constants</a></li>
 <li>UnableToSetNetworkReactionsError()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#acb3183c3dea755a8a26b00d638183c30">gridfire::exceptions::UnableToSetNetworkReactionsError</a></li>
 <li>unique_product_indices&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a9974f944a2cf5179baabebe09d60cf18">gridfire::GraphEngine::PrecomputedReaction</a></li>
 <li>unique_reactant_indices&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a510e380116e2e6d9158cf00fedac2666">gridfire::GraphEngine::PrecomputedReaction</a></li>
-<li>update()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8">PyDynamicEngine</a></li>
+<li>update()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a62f7dbbcf0554caa68e3d778580b3c1d">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0dd783afab7ef6005f0241f9de7b31f6">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a846432abf33c7602af0fbb5475c0ad32">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a775dac97d109c5fcd5c0287ca98f308c">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a179cb09a91d5c638d7a347137b208767">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a468bf58f66417493501c59d7a8aabc98">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#af6bff6a484e8729445c26620b489665d">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8">PyDynamicEngine</a></li>
 <li>upperIndex&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#aa99e1fa2fd4937592c066b0df16f377f">gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_v.html b/docs/html/functions_v.html
index f43ecdc3..ed69ec42 100644
--- a/docs/html/functions_v.html
+++ b/docs/html/functions_v.html
@@ -103,10 +103,11 @@ $(function(){initNavTree('functions_v.html',''); initResizable(true); });
 
 <h3><a id="index_v" name="index_v"></a>- v -</h3><ul>
 <li>validateConservation()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be">gridfire::GraphEngine</a></li>
-<li>validateGroupsWithFluxAnalysis()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aa55ed182301d216264daae3e6dfd8917">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>validateGroupsWithFluxAnalysis()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ad94c6fa2281d9104471631c6b90f411e">gridfire::MultiscalePartitioningEngineView</a></li>
 <li>validateNetworkState()&#160;:&#160;<a class="el" href="classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0">gridfire::DefinedEngineView</a></li>
 <li>validateState()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40">gridfire::AdaptiveEngineView</a></li>
-<li>values()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6d13bb5294f5dae7e2eb1d26720f944e">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
+<li>value&#160;:&#160;<a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html#a372af12d705b623075c41872f3ec96e1">gridfire::trigger::TriggerResult</a></li>
+<li>values()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6f5611ca669567534df1bd793e90d2e3">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
 <li>ValuesAtCompileTime&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a29d2722f9dbe03584086bc1ab8e102c0">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_vars.html b/docs/html/functions_vars.html
index a282883c..140ecfe2 100644
--- a/docs/html/functions_vars.html
+++ b/docs/html/functions_vars.html
@@ -102,6 +102,7 @@ $(function(){initNavTree('functions_vars.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all variables with links to the classes they belong to:</div>
 
 <h3><a id="index_a" name="index_a"></a>- a -</h3><ul>
+<li>A&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#aee9ee73218397780a2a7708c29779c73">gridfire::rates::weak::RateDataRow</a></li>
 <li>a&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a677505655a1c6922dfa9b32b70d7e815">gridfire::partition::record::RauscherThielemannPartitionDataRecord</a></li>
 <li>a0&#160;:&#160;<a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2fa6b65e300dcd181222b743c2b3d6ed">gridfire::reaction::RateCoefficientSet</a></li>
 <li>a1&#160;:&#160;<a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ace9dbd928e179784e47eaa108ce8d721">gridfire::reaction::RateCoefficientSet</a></li>
@@ -112,7 +113,11 @@ $(function(){initNavTree('functions_vars.html',''); initResizable(true); });
 <li>a6&#160;:&#160;<a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html#adf8e6ed7f91cb9e15d1469a808b1877a">gridfire::reaction::RateCoefficientSet</a></li>
 <li>affected_species_indices&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3e2e67e532970738d20491ea56b170f3">gridfire::GraphEngine::PrecomputedReaction</a></li>
 <li>aIon&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#a296e54c1b22f0c5d4d07a13577c6e069">gridfire::approx8::Approx8Net</a></li>
-<li>algebraic_indices&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ab11be6e7afeef1ac9e4314ad8345e0b0">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
+<li>algebraic_species&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#aff54b71dd17051bc991f747a328c7d8e">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
+<li>amu&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abe06f72b5b646cb3f1462b56d94a1de4">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>axis&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#afb2af3df6ec5ea439b5ea55571975391">gridfire::rates::weak::BoundsErrorInfo</a></li>
+<li>axisMaxValue&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a6371b8f8c45a9b069b19dd968ff81b28">gridfire::rates::weak::BoundsErrorInfo</a></li>
+<li>axisMinValue&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a07dfb669f73b029a71eb59cbbed69f42">gridfire::rates::weak::BoundsErrorInfo</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_vars.js b/docs/html/functions_vars.js
index 34a19ccf..75869ccd 100644
--- a/docs/html/functions_vars.js
+++ b/docs/html/functions_vars.js
@@ -19,6 +19,7 @@ var functions_vars =
     [ "s", "functions_vars_s.html", null ],
     [ "t", "functions_vars_t.html", null ],
     [ "u", "functions_vars_u.html", null ],
+    [ "v", "functions_vars_v.html", null ],
     [ "y", "functions_vars_y.html", null ],
     [ "z", "functions_vars_z.html", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/functions_vars_b.html b/docs/html/functions_vars_b.html
index 95c37f84..ce416f38 100644
--- a/docs/html/functions_vars_b.html
+++ b/docs/html/functions_vars_b.html
@@ -103,6 +103,7 @@ $(function(){initNavTree('functions_vars_b.html',''); initResizable(true); });
 
 <h3><a id="index_b" name="index_b"></a>- b -</h3><ul>
 <li>bound&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a5f673ab0425f06f3639cc9b5200ee3af">gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope</a></li>
+<li>boundsErrorInfo&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a1541a5280bd1b3f90bc62d7c0e1f80a1">gridfire::rates::weak::InterpolationError</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_vars_c.html b/docs/html/functions_vars_c.html
index 21e7007f..0b29ca3f 100644
--- a/docs/html/functions_vars_c.html
+++ b/docs/html/functions_vars_c.html
@@ -102,9 +102,9 @@ $(function(){initNavTree('functions_vars_c.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all variables with links to the classes they belong to:</div>
 
 <h3><a id="index_c" name="index_c"></a>- c -</h3><ul>
-<li>c&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306">gridfire::GraphEngine::constants</a></li>
-<li>cached_result&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adc814e5288f42c8eaf21c628858881a0">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
-<li>cached_time&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#afaebf35ef65567a7c824d5c14d479bb3">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
+<li>c&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306">gridfire::GraphEngine::constants</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab176a60ea64181d84be3bb6496ad0b0e">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>captured_exception&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a3e089139de2ba47e96dfe22c14d24e9e">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></li>
+<li>causes&#160;:&#160;<a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html#a7cf4d21d3cd3e53b62736932b44072cd">gridfire::trigger::TriggerResult</a></li>
 <li>chapter&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc">gridfire::reaclib::ReactionRecord</a></li>
 <li>coeffs&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0">gridfire::reaclib::ReactionRecord</a></li>
 <li>composition&#160;:&#160;<a class="el" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">gridfire::NetIn</a>, <a class="el" href="structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a">gridfire::NetOut</a></li>
diff --git a/docs/html/functions_vars_d.html b/docs/html/functions_vars_d.html
index 914e83e2..84d0c4a4 100644
--- a/docs/html/functions_vars_d.html
+++ b/docs/html/functions_vars_d.html
@@ -102,11 +102,20 @@ $(function(){initNavTree('functions_vars_d.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all variables with links to the classes they belong to:</div>
 
 <h3><a id="index_d" name="index_d"></a>- d -</h3><ul>
-<li>data&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070">gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope</a></li>
+<li>d_log_antineutrino_loss_bd&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a87894b5fdb0323c41f8e1e179ffefd1e">gridfire::rates::weak::WeakRateDerivatives</a></li>
+<li>d_log_beta_minus&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a54ba76b67d037954af1cbd6052becc61">gridfire::rates::weak::WeakRateDerivatives</a></li>
+<li>d_log_beta_plus&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#ab79353551bc5f832c986d24384d8a53a">gridfire::rates::weak::WeakRateDerivatives</a></li>
+<li>d_log_electron_capture&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a5e15e3d4d03288bd6f5dfc7054120514">gridfire::rates::weak::WeakRateDerivatives</a></li>
+<li>d_log_neutrino_loss_ec&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a415f5ff7ee18cc241eab5fbf6a0cdc17">gridfire::rates::weak::WeakRateDerivatives</a></li>
+<li>d_log_positron_capture&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a3cf82898078fcc9aa69344b4d2cf8783">gridfire::rates::weak::WeakRateDerivatives</a></li>
+<li>data&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070">gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#ad0df5ef84e3a78d881838a3bb014db83">gridfire::rates::weak::IsotopeGrid</a></li>
 <li>density&#160;:&#160;<a class="el" href="structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577">gridfire::NetIn</a></li>
-<li>dt&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a6a293628e61f241b9d335cd223da5f7c">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
+<li>dEps_dRho&#160;:&#160;<a class="el" href="structgridfire_1_1_energy_derivatives.html#adc09db042b1fdee7468c807491245046">gridfire::EnergyDerivatives</a>, <a class="el" href="structgridfire_1_1_net_out.html#ad0bde670fb87bcab4de413e8284d624e">gridfire::NetOut</a></li>
+<li>dEps_dT&#160;:&#160;<a class="el" href="structgridfire_1_1_energy_derivatives.html#a70ae455c021a950fda7bda3022456542">gridfire::EnergyDerivatives</a>, <a class="el" href="structgridfire_1_1_net_out.html#a210c0c395bc012c8ce6bef8cc6b683d6">gridfire::NetOut</a></li>
+<li>description&#160;:&#160;<a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html#aaf99ffdeb73f5e792e61c4cca68aa157">gridfire::trigger::TriggerResult</a></li>
+<li>dt&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a6442d15673e6385bb6fdd11e1179c487">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
 <li>dt0&#160;:&#160;<a class="el" href="structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a">gridfire::NetIn</a></li>
-<li>dydt&#160;:&#160;<a class="el" href="structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d">gridfire::StepDerivatives&lt; T &gt;</a></li>
+<li>dydt&#160;:&#160;<a class="el" href="structgridfire_1_1_step_derivatives.html#a1ae99ac1684d8df519f8d6af413d2cb1">gridfire::StepDerivatives&lt; T &gt;</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_vars_e.html b/docs/html/functions_vars_e.html
index eca44211..d9673cb0 100644
--- a/docs/html/functions_vars_e.html
+++ b/docs/html/functions_vars_e.html
@@ -102,8 +102,11 @@ $(function(){initNavTree('functions_vars_e.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all variables with links to the classes they belong to:</div>
 
 <h3><a id="index_e" name="index_e"></a>- e -</h3><ul>
-<li>energy&#160;:&#160;<a class="el" href="structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b">gridfire::NetIn</a>, <a class="el" href="structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6">gridfire::NetOut</a></li>
-<li>engine&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a53985d354dcaeda96dc39828c6c9d9d1">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
+<li>electronMassG&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8998f5acb979463eeabb14da50fb6856">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>electronMassMeV&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a24d6517e15c177fb8ca72f08f8eaf509">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>energy&#160;:&#160;<a class="el" href="structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b">gridfire::NetIn</a>, <a class="el" href="structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6">gridfire::NetOut</a>, <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a1fb4ca773aaad8d1d958a3a0e82d8edd">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></li>
+<li>engine&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ac44d6bd0f4952d8bfdf487a09264872b">gridfire::solver::CVODESolverStrategy::CVODEUserData</a>, <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#af8c233f893bf740e81c5254d84534067">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
+<li>eVgRelation&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#af834029caff08f9d5f7ff3a817ade469">gridfire::rates::weak::WeakReaction::constants</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_vars_l.html b/docs/html/functions_vars_l.html
index ad4c5842..1972704a 100644
--- a/docs/html/functions_vars_l.html
+++ b/docs/html/functions_vars_l.html
@@ -103,8 +103,17 @@ $(function(){initNavTree('functions_vars_l.html',''); initResizable(true); });
 
 <h3><a id="index_l" name="index_l"></a>- l -</h3><ul>
 <li>label&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#a2165deb1c0a54a5086b496cf34604fa5">gridfire::reaclib::ReactionRecord</a></li>
-<li>last_observed_time&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a3e4d242a2f5f6726b980119ed80a9901">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
-<li>last_step_time&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a349187ed1b13c91ef6f9d930db58d97b">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
+<li>last_step_time&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a92187c15b7bcb90adebecc87e1436a">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
+<li>log_antineutrino_loss_bd&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a9d4db2970fc7f525824f6666198b3d56">gridfire::rates::weak::RateDataRow</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9134b85837be88ece72c20df9edce50d">gridfire::rates::weak::WeakRatePayload</a></li>
+<li>log_beta_minus&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ab41dace2493e036460736d8124a3475c">gridfire::rates::weak::RateDataRow</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aa2e81d295afba465427e46b36e1438e4">gridfire::rates::weak::WeakRatePayload</a></li>
+<li>log_beta_plus&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a359555f2b05e4b30bf810e12456df43b">gridfire::rates::weak::RateDataRow</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9d71d093fbb35cd8a451ea12cde28771">gridfire::rates::weak::WeakRatePayload</a></li>
+<li>log_electron_capture&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a075a70baa4ac5859fb01d493e08debdd">gridfire::rates::weak::RateDataRow</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aeb0494f46a0c6b9e29ed4cc15f07364b">gridfire::rates::weak::WeakRatePayload</a></li>
+<li>log_neutrino_loss&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#aa603395b65c8639f8d93f73b7d9bd61e">gridfire::rates::weak::WeakReactionEntry</a></li>
+<li>log_neutrino_loss_ec&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#abd2d7fc00f582316eae824ccafef9b4b">gridfire::rates::weak::RateDataRow</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a6bbeb82cc27fd59ceafa320c1515106a">gridfire::rates::weak::WeakRatePayload</a></li>
+<li>log_positron_capture&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#afc3f5d3e5c3ec52134619fd462922f85">gridfire::rates::weak::RateDataRow</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#abe1b2dd11ec550311a58555f3a945cbe">gridfire::rates::weak::WeakRatePayload</a></li>
+<li>log_rate&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a90b6e47918fa750c28917ba6136c7880">gridfire::rates::weak::WeakReactionEntry</a></li>
+<li>log_rhoYe&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a17dde21438cabec9ae23a0d318c41a7a">gridfire::rates::weak::WeakReactionEntry</a></li>
+<li>log_rhoye&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ad7908a8b8a1db5014f23a7b3855156b0">gridfire::rates::weak::RateDataRow</a></li>
 <li>lowerIndex&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a2da59e4f6e2ba3eff581bacabbf387de">gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_vars_m.html b/docs/html/functions_vars_m.html
index 0b65241c..ba419717 100644
--- a/docs/html/functions_vars_m.html
+++ b/docs/html/functions_vars_m.html
@@ -102,98 +102,139 @@ $(function(){initNavTree('functions_vars_m.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all variables with links to the classes they belong to:</div>
 
 <h3><a id="index_m" name="index_m"></a>- m -</h3><ul>
+<li>m_A&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a99be74b126d50c15d21c0724d933af87">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a27f1fd8c8a93576f83a4f3320469c83a">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a0d7818e59a8d86e86053bcb6d5d7d2b8">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a6da04b5b15371f7087be03bb337dbdd6">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>m_a&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a0beb567afdecd85e336b493ff85326bd">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></li>
 <li>m_activeReactionIndices&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>m_activeReactions&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965">gridfire::DefinedEngineView</a></li>
+<li>m_activeReactions&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ab5ab06941bf6d97007d0a76658bf2aa6">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a824fe65ae22fa856051f2652764a0bb6">gridfire::DefinedEngineView</a></li>
 <li>m_activeSpecies&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae">gridfire::DefinedEngineView</a></li>
 <li>m_activeSpeciesIndices&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>m_algebraic_abundances&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3af2b37ce21829d9554d702cad074470">gridfire::MultiscalePartitioningEngineView</a></li>
 <li>m_algebraic_species&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>m_algebraic_species_indices&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a53862719dd73f98bc69eecde090cf655">gridfire::MultiscalePartitioningEngineView</a></li>
+<li>m_atomic&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a4f2bf61b35566e439ac8a48da265d215">gridfire::rates::weak::WeakReaction</a></li>
 <li>m_atomicReverseRates&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6">gridfire::GraphEngine</a></li>
+<li>m_B&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#af8ee88421d0dfd92de6df96d686ece38">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a30dec370b61a5f0562956394b89e8f89">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></li>
 <li>m_baseEngine&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93">gridfire::MultiscalePartitioningEngineView</a></li>
 <li>m_cacheConfig&#160;:&#160;<a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#a711acccecadd93495fd08c81838be2d8">gridfire::QSECacheKey</a></li>
-<li>m_cached_result&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
-<li>m_cached_time&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a17b83f2478395c934c4ec2c964e9d35e">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
 <li>m_cacheStats&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>m_callback&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a44fbc45faa9e4b6864ac6b81282941b5">gridfire::solver::DirectNetworkSolver</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a70d801db98fe8e2e4e6010f37da29905">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
-<li>m_chapter&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b">gridfire::reaction::Reaction</a></li>
-<li>m_config&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874">gridfire::io::SimpleReactionListFileParser</a>, <a class="el" href="classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09">gridfire::Network</a>, <a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a2cc12e737a753a42b72a45be3fbfa8ab">gridfire::solver::DirectNetworkSolver</a></li>
-<li>m_constants&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410">gridfire::Network</a></li>
+<li>m_callback&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50c7b4e1ff2c88ce424c745478414e30">gridfire::solver::CVODESolverStrategy</a></li>
+<li>m_chapter&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#adbcb383bac0f47c66251ee1b7c5f539d">gridfire::reaction::ReaclibReaction</a></li>
+<li>m_config&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874">gridfire::io::SimpleReactionListFileParser</a>, <a class="el" href="classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09">gridfire::Network</a>, <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a202fe9e6499aac5f6813e036ee4ed2d5">gridfire::solver::CVODESolverStrategy</a></li>
+<li>m_constants&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410">gridfire::Network</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2f0ee4c0d52db0f58781f90dd39dc0f7">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_constraints&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50d8f309ca897fa83b16db0a1701b339">gridfire::solver::CVODESolverStrategy</a></li>
+<li>m_counter&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a80d6f82095c3b5fdbc46776e183cdb1f">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>m_cvode_mem&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab5a8fa55e36685cac50c1dbdd8dbfa57">gridfire::solver::CVODESolverStrategy</a></li>
+<li>m_data&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_column.html#aaa99c4d00c3b79e37f2e73e7c6854758">gridfire::utils::Column&lt; T &gt;</a></li>
 <li>m_depth&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01">gridfire::GraphEngine</a></li>
 <li>m_dt0&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a6ed8022834e9541b3e547dd867648b0f">gridfire::approx8::Approx8Network</a></li>
 <li>m_dynamic_species&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>m_dynamic_species_indices&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a38b4f0373c3bd81503889650c0bb69bb">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>m_engine&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d">gridfire::GraphEngine::AtomicReverseRate</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a035962dfdfc13d255def98befefcccd9">gridfire::solver::DirectNetworkSolver::RHSManager</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></li>
+<li>m_engine&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d">gridfire::GraphEngine::AtomicReverseRate</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></li>
 <li>m_eps_nuc&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a24207163a7ea2dde675b458f9df37a99">gridfire::exceptions::StaleEngineTrigger::state</a></li>
+<li>m_epsADFun&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a1d5f6a3f217af7f4d0f95bdf7916b774">gridfire::GraphEngine</a></li>
 <li>m_fileName&#160;:&#160;<a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b">gridfire::FileDefinedEngineView</a></li>
 <li>m_filename&#160;:&#160;<a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099">gridfire::io::MESANetworkFileParser</a></li>
 <li>m_format&#160;:&#160;<a class="el" href="classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18">gridfire::Network</a></li>
 <li>m_full_jacobian_sparsity_pattern&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06">gridfire::GraphEngine</a></li>
 <li>m_ground_state_spin&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245">gridfire::partition::GroundStatePartitionFunction</a></li>
 <li>m_hash&#160;:&#160;<a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#ab860b40d4ccb3c16a962d96bc767ff05">gridfire::QSECacheKey</a></li>
+<li>m_header&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_column.html#aaddf58469be3e3fd3bee0f4f660fe9e0">gridfire::utils::Column&lt; T &gt;</a></li>
 <li>m_hit&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a0c3bd8d5918e344657227a09cd7e39a5">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
-<li>m_id&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5fda3af5ea9ae0ecfb60a61a9e07f5b4">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
+<li>m_hits&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a43e6a9c01b163ab92a0b413bfba52ef5">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a021c30d6db015bb88a70af348a5dd336">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a86404f57e0e0683fc56e0e49321e5e3b">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a35d519d5266c68b696b779b275574ebf">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0d3b7c1d1057f442417c2f8c2a7177c5">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a2b1b4a9ef137e76d39e7a7dcb6cf725d">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aff23db33140aa6a5a2ad36eda77b833d">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
+<li>m_id&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a79877bd387bd891e602adff3f99cb4c5">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ca86e0f8f95ffb6d87ca295e44f14c5">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111">gridfire::ReactionSet</a></li>
 <li>m_index&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e">gridfire::expectations::EngineIndexError</a></li>
+<li>m_indexToSpeciesMap&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a8ff064c9996772281984f88ee492d04a">gridfire::GraphEngine</a></li>
+<li>m_initial_comp&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ac5bf1e4b4ac8435af5739ce970b373d7">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
+<li>m_interpolator&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a874efa5a57427c8afecd0375094da6e9">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#adf203cbae7d7afcd274020b5210b426b">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_interval&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab6215873390f6bedab5c9f83b990b5e0">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></li>
 <li>m_isStale&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382">gridfire::DefinedEngineView</a></li>
+<li>m_J&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afd1053d0827512b6831ee15f14488c20">gridfire::solver::CVODESolverStrategy</a></li>
 <li>m_jac_work&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891">gridfire::GraphEngine</a></li>
 <li>m_jacobianMatrix&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910">gridfire::GraphEngine</a></li>
-<li>m_last_observed_time&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a49268e65b89444c3caf1e69323ce545b">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
-<li>m_last_step_time&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a69d773a1cfe4804876dbf23de1f212c9">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
-<li>m_logger&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66">gridfire::io::SimpleReactionListFileParser</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5">gridfire::Network</a>, <a class="el" href="classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d">gridfire::NetworkPrimingEngineView</a>, <a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac6fcc5b08938b73ff6dac680e5bf28d9">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f">gridfire::screening::WeakScreeningModel</a>, <a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079">gridfire::solver::DirectNetworkSolver</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a6cc605a83b5ac5ae048d1044be284ada">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
+<li>m_last_trigger_time&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a51ac3899010c2790fc98801ffba9407e">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></li>
+<li>m_last_trigger_time_delta&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab93cb25bbebb159a8608a737bd972abd">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></li>
+<li>m_logger&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66">gridfire::io::SimpleReactionListFileParser</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5">gridfire::Network</a>, <a class="el" href="classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d">gridfire::NetworkPrimingEngineView</a>, <a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#abab0ed78925789856ebb119d60c6a53d">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb">gridfire::ReactionSet</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f">gridfire::screening::WeakScreeningModel</a>, <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5867eb99b00815b8b4f710cb48904dbe">gridfire::solver::CVODESolverStrategy</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#afbd9258d65370bbc965e799c82f0e1c0">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a16e9b87a8abb05bb6b5410903eb49e91">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#abe902b2a42a6451f64497e075b0e0b25">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
 <li>m_logManager&#160;:&#160;<a class="el" href="classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16">gridfire::Network</a></li>
+<li>m_LS&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af4a2f003a4c4c06b4b72840f2d445f81">gridfire::solver::CVODESolverStrategy</a></li>
 <li>m_message&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a77c9a660a2748c2e3a1c7e94edad1cf0">gridfire::exceptions::FailedToPartitionEngineError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html#a581527fc03fdd84a8309c147259ec09d">gridfire::exceptions::NetworkResizedError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb">gridfire::exceptions::StaleEngineError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047">gridfire::exceptions::UnableToSetNetworkReactionsError</a>, <a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc">gridfire::expectations::EngineError</a></li>
 <li>m_miss&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a73ca615753553f4a85160bd9f166da5b">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
-<li>m_networkSpecies&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc">gridfire::GraphEngine</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a0eed45bfe5296e4ca9f87b5b53841931">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
+<li>m_misses&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a1714656e907edfcba2d354ff5d7c9ceb">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0a5c2c5aedc779c1535d3839c6a6596e">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#aa1253080cd57cdf0be6780773ce6c73c">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a14b1884a9014df33a1ec90dd3433c0b9">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a00ede9fff51a8318913fd2ed504c1007">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a021c760717efef3fc3b415dee6d4840b">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
+<li>m_N&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a652ba8d1ac36b9713f426eedf2b1ead0">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>m_networkSpecies&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc">gridfire::GraphEngine</a></li>
 <li>m_networkSpeciesMap&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827">gridfire::GraphEngine</a></li>
-<li>m_num_steps&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
+<li>m_num_steps&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab7495898e893640670f49308a105658f">gridfire::solver::CVODESolverStrategy</a></li>
 <li>m_operatorHits&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac18229250c4c160aada96e19325faa29">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
 <li>m_operatorMisses&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
 <li>m_parser&#160;:&#160;<a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500">gridfire::FileDefinedEngineView</a></li>
 <li>m_partitionData&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a50ce19df4c12e22bbcb61422248a4038">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
 <li>m_partitionFunction&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e">gridfire::GraphEngine</a></li>
 <li>m_partitionFunctions&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8">gridfire::partition::CompositePartitionFunction</a></li>
-<li>m_peName&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248">gridfire::reaction::Reaction</a></li>
+<li>m_peName&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a51f658789f34f96e0e6bd42cef5cbfe4">gridfire::reaction::ReaclibReaction</a></li>
 <li>m_precomputedReactions&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3">gridfire::GraphEngine</a></li>
 <li>m_primingSpecies&#160;:&#160;<a class="el" href="classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5">gridfire::NetworkPrimingEngineView</a></li>
-<li>m_products&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e">gridfire::reaction::Reaction</a></li>
+<li>m_product&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aee395d13ed3a515d5c1d69bedffca5de">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_product_a&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2567545c89eb847a15909b02fa0f383e">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_product_z&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ab1be1d3010ff539b8a911506734fd9cf">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_products&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ac350a26bdf19d7c1d20db55a226e6063">gridfire::reaction::ReaclibReaction</a></li>
 <li>m_qse_abundance_cache&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e">gridfire::MultiscalePartitioningEngineView</a></li>
 <li>m_qse_groups&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6">gridfire::MultiscalePartitioningEngineView</a></li>
-<li>m_qse_solve_indices&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4eb11e99dc2a7e038d815bf7c6bd0be8">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
-<li>m_qValue&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b">gridfire::reaction::Reaction</a></li>
-<li>m_rateCoefficients&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72">gridfire::reaction::Reaction</a></li>
-<li>m_rates&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#a81f75f0085f8a5a45169f0b7240c809d">gridfire::reaction::LogicalReaction</a></li>
-<li>m_reactants&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11">gridfire::reaction::Reaction</a></li>
+<li>m_qse_solve_species&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4804c6481c2706b04f48c1bbfd9fd5f8">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
+<li>m_qse_solve_species_index_map&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a23e6ba8dfe37b7f167837296a6654684">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
+<li>m_qValue&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a498c202a259cbc315997ec68a2cb8a59">gridfire::reaction::ReaclibReaction</a></li>
+<li>m_rate_table&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a7a01f956eccd3a0a90dd08984ca3f009">gridfire::rates::weak::WeakRateInterpolator</a></li>
+<li>m_rateCoefficients&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ea3de0412395b7b617c4b71cbc2ab68">gridfire::reaction::ReaclibReaction</a></li>
+<li>m_rates&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#afe1b95bf9d81f7521b9f19bbd1305d01">gridfire::reaction::LogicalReaclibReaction</a></li>
+<li>m_reactant&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aeaceef054714e2a9667986406107ba3a">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_reactant_a&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a37dfb1d460e78e81a6def62e7217e6f8">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_reactant_z&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a3d1b52076e102d07acb7200a7ee99165">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_reactants&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7cf403bc519ce39a1af886432a653826">gridfire::reaction::ReaclibReaction</a></li>
 <li>m_reaction&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a98ed8b450f7868f55e8362a848a4710d">gridfire::GraphEngine::AtomicReverseRate</a></li>
 <li>m_reactionIDMap&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3">gridfire::GraphEngine</a></li>
 <li>m_reactionIndexMap&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd">gridfire::DefinedEngineView</a></li>
-<li>m_reactionNameMap&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a3a4c2448865580001fd3c797b9f56979">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>m_reactions&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#acb7c4f5108b0efeae48ad15598e808c3">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5962968fe478c79250e9d88d80a87600">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
-<li>m_reverse&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9">gridfire::reaction::Reaction</a></li>
-<li>m_rho&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44">gridfire::exceptions::StaleEngineTrigger::state</a>, <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63">gridfire::QSECacheKey</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
+<li>m_reactionNameMap&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44">gridfire::ReactionSet</a></li>
+<li>m_reactions&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#ad3b97595871d1f62ee7f4726b601ebef">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe">gridfire::ReactionSet</a></li>
+<li>m_relative&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa4162916f562b4d7ea0205d6f3e6f917">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
+<li>m_resets&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#ae3ff88ddb15d04e798fc03c6c941e312">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a87b6e54f3a0536d20709d7e746ec575d">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#adb9c36fa46a30c28e68c59a7d3bd825d">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#adc6f560d9199455ba98d85eadfe02847">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#acd55d04da377c8bf4af3ea2fcf2f1918">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a3004a10bb89ecd7b2ba6103c9f5d4b96">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad4cc7113574f71905bc93cc40024b4bd">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
+<li>m_reverse&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#af52b42d940f6a09dba5d28898d2b0b1f">gridfire::reaction::ReaclibReaction</a></li>
+<li>m_rho&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44">gridfire::exceptions::StaleEngineTrigger::state</a>, <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63">gridfire::QSECacheKey</a></li>
 <li>m_rhsADFun&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876">gridfire::GraphEngine</a></li>
 <li>m_screeningModel&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210">gridfire::GraphEngine</a></li>
 <li>m_screeningType&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80">gridfire::GraphEngine</a></li>
-<li>m_sourceLabel&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6">gridfire::reaction::Reaction</a></li>
-<li>m_sources&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#a7fe91d24e20ebc76d612f6ad742f476f">gridfire::reaction::LogicalReaction</a></li>
+<li>m_sourceLabel&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7e79437a68947e176b8dd7dcbe27baab">gridfire::reaction::ReaclibReaction</a></li>
+<li>m_sources&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a8c6f12a01c6d1fdeba1f0cc73128731e">gridfire::reaction::LogicalReaclibReaction</a></li>
 <li>m_species_cache&#160;:&#160;<a class="el" href="class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03">PyDynamicEngine</a>, <a class="el" href="class_py_engine.html#a73caaa7606e2cdfd1aa82729a78ebb73">PyEngine</a></li>
 <li>m_speciesIndexMap&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e">gridfire::DefinedEngineView</a></li>
 <li>m_speciesToIndexMap&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7">gridfire::GraphEngine</a></li>
 <li>m_state&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a7f9fa2e34da3772714723ef7d5083be5">gridfire::exceptions::StaleEngineTrigger</a></li>
+<li>m_stdout_logging_enabled&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af3e470b5a6f982c107785c64b169a992">gridfire::solver::CVODESolverStrategy</a></li>
 <li>m_stiff&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a697cb49bebc8d0659eb791500c451c67">gridfire::approx8::Approx8Network</a>, <a class="el" href="classgridfire_1_1_network.html#aefe364ae5af783e19e7b93bfd475566e">gridfire::Network</a></li>
 <li>m_stoichiometryMatrix&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24">gridfire::GraphEngine</a></li>
+<li>m_sun_ctx&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ac57a4f62d95d769c379470e680e6882d">gridfire::solver::CVODESolverStrategy</a></li>
 <li>m_t&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a352cd33629e63286808df617d36cb70b">gridfire::exceptions::StaleEngineTrigger::state</a></li>
-<li>m_T9&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963">gridfire::exceptions::StaleEngineTrigger::state</a>, <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7">gridfire::QSECacheKey</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
+<li>m_T9&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963">gridfire::exceptions::StaleEngineTrigger::state</a>, <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7">gridfire::QSECacheKey</a></li>
+<li>m_threshold&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#aeac341c1e854d561a29aa39ad306d5d7">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ab7d86e5c89a848cf238141393fe3a8de">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
+<li>m_timestep_window&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ae18e08a0bd72b68605d64e4d84355f79">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
 <li>m_tMax&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a6fadf388f07c160f1887a3cb72eaa869">gridfire::approx8::Approx8Network</a></li>
 <li>m_total_steps&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#ac1cddf0f2955d4282afcf4a90a2de9c0">gridfire::exceptions::StaleEngineTrigger::state</a></li>
+<li>m_type&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae78d2a9b20c22a6ad624f4d968cbf639">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a92c3590161c63c6ed4e7650d2b7beee3">gridfire::rates::weak::WeakReaction</a></li>
+<li>m_updates&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a7f88c1139e1b05baed44614104d601b4">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#ab0a33f49be02d34b27f75edf75dbc06d">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#ae4830ed152643770b0888b040475b000">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#af595a5daab0f5b3ffc450c6de6737517">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a4885bdcc719a0f8c8394905893739b96">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab80799eb7c80b3b20c1a7e7f9e1f5030">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a25f6ac369c590a8370270bdc70545171">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
 <li>m_usePrecomputation&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de">gridfire::GraphEngine</a></li>
 <li>m_useReverseReactions&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc">gridfire::GraphEngine</a></li>
 <li>m_view&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
-<li>m_Y&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf">gridfire::exceptions::StaleEngineTrigger::state</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a">gridfire::QSECacheKey</a></li>
+<li>m_weak_network&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a8169adef9b4b3c7552c7a8fdc945cf6f">gridfire::rates::weak::WeakReactionMap</a></li>
+<li>m_weakRateInterpolator&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a9ac5893030802b0b846552949e866340">gridfire::GraphEngine</a></li>
+<li>m_windowSize&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa03c13813065f720cf698c240f07d559">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
+<li>m_Y&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf">gridfire::exceptions::StaleEngineTrigger::state</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a">gridfire::QSECacheKey</a>, <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aae19c1ec467051404a7bf1d4c7066c22">gridfire::solver::CVODESolverStrategy</a></li>
 <li>m_y&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#abf9f13ff532917ddac4a7d987698836d">gridfire::approx8::Approx8Network</a></li>
-<li>m_Y_full_initial&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3bc901d2d8234d1f61e94d0fe0777f7d">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
 <li>m_Y_scale&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
+<li>m_YErr&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a0717afcde6fdb71b12490bbcadb5fdb4">gridfire::solver::CVODESolverStrategy</a></li>
+<li>m_z&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a292dfe5fdfd3b90a36906f5f609a4c1c">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></li>
 <li>massFractionChanges&#160;:&#160;<a class="el" href="structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7">gridfire::PrimingReport</a></li>
 <li>mean_timescale&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
+<li>MeV2Erg&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ae527298ffcdeb0b7b4089eeed4ddb58d">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>MeVgRelation&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab60f42677de82f3aab77d2af846c2ffd">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>MeVPerGraph&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a57273916131b68d1aed6e16d85667427">gridfire::rates::weak::WeakReaction::constants</a></li>
 <li>mIon&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#a928b7810cb2993d59d40aa73c2faef18">gridfire::approx8::Approx8Net</a></li>
+<li>mu_e&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ac08d42071950006ccf3c438253ef9ee9">gridfire::rates::weak::RateDataRow</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a4a1cbc93d5e197a69a5a29a8cabc6498">gridfire::rates::weak::WeakReactionEntry</a></li>
+<li>mue_axis&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a82cc218ce48dcb835d07422dad927a5a">gridfire::rates::weak::IsotopeGrid</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_vars_n.html b/docs/html/functions_vars_n.html
index 015d1556..f4587daf 100644
--- a/docs/html/functions_vars_n.html
+++ b/docs/html/functions_vars_n.html
@@ -103,11 +103,14 @@ $(function(){initNavTree('functions_vars_n.html',''); initResizable(true); });
 
 <h3><a id="index_n" name="index_n"></a>- n -</h3><ul>
 <li>Na&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html#a5ccc874d6704615e0ce54c14dc67699d">gridfire::GraphEngine::constants</a></li>
-<li>networkSpecies&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#afee439e7b59805a6b4dcffffa2b0e6e3">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
+<li>name&#160;:&#160;<a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html#a1f27dd6d5cca43956812ec78cfb7be2d">gridfire::trigger::TriggerResult</a></li>
+<li>networkSpecies&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a41a5bc46358cb59373f62c791e1bc29c">gridfire::solver::CVODESolverStrategy::CVODEUserData</a>, <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a75d7e32c9df3d8a047069fe2d64cd089">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
+<li>neutronMassG&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a2d6c6d4eb9b54c050c266298611c1e44">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>neutronMassMeV&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a0629ea0e5d51166e400696a358b0045e">gridfire::rates::weak::WeakReaction::constants</a></li>
 <li>nIso&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#a31928b4041479da6515a90569322fc02">gridfire::approx8::Approx8Net</a></li>
 <li>normalized_g_values&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aea71e9198606e0ba393321178f988fcc">gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData</a>, <a class="el" href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a64c1cef58c1bdeab1fcc7f9a30a71609">gridfire::partition::record::RauscherThielemannPartitionDataRecord</a></li>
 <li>nuclearEnergyGenerationRate&#160;:&#160;<a class="el" href="structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008">gridfire::StepDerivatives&lt; T &gt;</a></li>
-<li>num_steps&#160;:&#160;<a class="el" href="structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6">gridfire::NetOut</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a85eab3fb76bcef5044b2be6cc60a46df">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
+<li>num_steps&#160;:&#160;<a class="el" href="structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6">gridfire::NetOut</a>, <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a51e86d2721053055d8479662b864e367">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
 <li>nVar&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#a7218aa9b3dbe7c6eca52119e115692db">gridfire::approx8::Approx8Net</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_vars_p.html b/docs/html/functions_vars_p.html
index 1c346c33..1d7dd8bc 100644
--- a/docs/html/functions_vars_p.html
+++ b/docs/html/functions_vars_p.html
@@ -105,6 +105,8 @@ $(function(){initNavTree('functions_vars_p.html',''); initResizable(true); });
 <li>primedComposition&#160;:&#160;<a class="el" href="structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb">gridfire::PrimingReport</a></li>
 <li>product_powers&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3ce63aa3ad88568f4eb0d3ca2414209f">gridfire::GraphEngine::PrecomputedReaction</a></li>
 <li>products_str&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#af1b1d3b0308d965ef0697b247fcf9082">gridfire::reaclib::ReactionRecord</a></li>
+<li>protonMassG&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abdb3124f6ef5ea294f402d30717fa208">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>protonMassMeV&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8a780d3937e60794f007ec65fe866a56">gridfire::rates::weak::WeakReaction::constants</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_vars_q.html b/docs/html/functions_vars_q.html
index 674f4cfa..40d2468d 100644
--- a/docs/html/functions_vars_q.html
+++ b/docs/html/functions_vars_q.html
@@ -102,6 +102,7 @@ $(function(){initNavTree('functions_vars_q.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all variables with links to the classes they belong to:</div>
 
 <h3><a id="index_q" name="index_q"></a>- q -</h3><ul>
+<li>queryValue&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a3eb0be2063f7333994a026a569ae5568">gridfire::rates::weak::BoundsErrorInfo</a></li>
 <li>qValue&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#aeeb8a1e078a27420e398663825cce644">gridfire::reaclib::ReactionRecord</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_vars_r.html b/docs/html/functions_vars_r.html
index 43890902..7854c4ea 100644
--- a/docs/html/functions_vars_r.html
+++ b/docs/html/functions_vars_r.html
@@ -105,11 +105,12 @@ $(function(){initNavTree('functions_vars_r.html',''); initResizable(true); });
 <li>reactant_powers&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275">gridfire::GraphEngine::PrecomputedReaction</a></li>
 <li>reactants_str&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#a67afc513db8dbcc43d79733e22ca8d39">gridfire::reaclib::ReactionRecord</a></li>
 <li>reaction_index&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497">gridfire::GraphEngine::PrecomputedReaction</a></li>
-<li>reactionPtr&#160;:&#160;<a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a3bb21f20df8115d37108cf3c3be3bc6f">gridfire::AdaptiveEngineView::ReactionFlow</a></li>
+<li>reactionPtr&#160;:&#160;<a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#afc894db76a799be17be91130ff3ae6d9">gridfire::AdaptiveEngineView::ReactionFlow</a></li>
 <li>reverse&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd">gridfire::reaclib::ReactionRecord</a></li>
 <li>reverse_symmetry_factor&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6bcfe2230dd54b088180d34389266b07">gridfire::GraphEngine::PrecomputedReaction</a></li>
-<li>rho&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ad565c013b373f312f0f5157f11d02cef">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
+<li>rho&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#afdc510f8160693806737c4ab517058b8">gridfire::solver::CVODESolverStrategy::CVODEUserData</a>, <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a25afbc9f8a907304992e144dfa3529">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
 <li>rho_tol&#160;:&#160;<a class="el" href="structgridfire_1_1_q_s_e_cache_config.html#a57b7ca68463aa9b78007e5cf35ebf7ce">gridfire::QSECacheConfig</a></li>
+<li>rhoYe_axis&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a30362f5bb497ae74cf6a10fd701273a0">gridfire::rates::weak::IsotopeGrid</a></li>
 <li>rpName&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#a523b7cfb0a6d8ddccd785aef2f425ad1">gridfire::reaclib::ReactionRecord</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_vars_s.html b/docs/html/functions_vars_s.html
index d03e2cf1..a570844b 100644
--- a/docs/html/functions_vars_s.html
+++ b/docs/html/functions_vars_s.html
@@ -102,10 +102,11 @@ $(function(){initNavTree('functions_vars_s.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all variables with links to the classes they belong to:</div>
 
 <h3><a id="index_s" name="index_s"></a>- s -</h3><ul>
-<li>seed_indices&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
-<li>species_indices&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
+<li>seed_species&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af2d7e09d940e0fb3ca24a4bc8ec01031">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
+<li>solver_instance&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ad7f3eb9caae25ef25357c41c23d6b392">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></li>
+<li>speedOfLight&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a016c3e02f622e21073f9110707177b76">gridfire::rates::weak::WeakReaction::constants</a></li>
 <li>staleType&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590">gridfire::expectations::StaleEngineError</a></li>
-<li>state&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adab4b53a94b935f89f799bd5a67847a2">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
+<li>state&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#aaae3c42b9172be4d501f022e67f5a6f6">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
 <li>status&#160;:&#160;<a class="el" href="structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d">gridfire::PrimingReport</a></li>
 <li>stoichiometric_coefficients&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c">gridfire::GraphEngine::PrecomputedReaction</a></li>
 <li>success&#160;:&#160;<a class="el" href="structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3">gridfire::PrimingReport</a></li>
diff --git a/docs/html/functions_vars_t.html b/docs/html/functions_vars_t.html
index 61c84285..b5791bc5 100644
--- a/docs/html/functions_vars_t.html
+++ b/docs/html/functions_vars_t.html
@@ -102,14 +102,16 @@ $(function(){initNavTree('functions_vars_t.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all variables with links to the classes they belong to:</div>
 
 <h3><a id="index_t" name="index_t"></a>- t -</h3><ul>
-<li>t&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ad49305586fdc676f96161e91c6b863dd">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
-<li>T9&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a838fdd3dd8beac8ca7e735921230ea2d">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
+<li>t&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a0b39f0d207181840efacb64417b492ae">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
+<li>T9&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a549f4c9266722314f61d668d8507145c">gridfire::rates::weak::WeakReactionEntry</a>, <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a0b27605ac3211a1805d7910c899bbcce">gridfire::solver::CVODESolverStrategy::CVODEUserData</a>, <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a25743a21ed801ed4288309f35dc9a289">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
+<li>t9&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a2344c046a615bc6ff07327d6bcfe074b">gridfire::rates::weak::RateDataRow</a></li>
+<li>t9_axis&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a99da523669d85aa0a628d35a077d541c">gridfire::rates::weak::IsotopeGrid</a></li>
 <li>T9_high&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a750aa8cd8aa8b8da6d1f0db1cc66233d">gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints</a></li>
 <li>T9_low&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a48e170f77812fdbc06cff18267b241ca">gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints</a></li>
 <li>T9_tol&#160;:&#160;<a class="el" href="structgridfire_1_1_q_s_e_cache_config.html#af4dca2b24aa364fbbf6e99eb26774f40">gridfire::QSECacheConfig</a></li>
 <li>temperature&#160;:&#160;<a class="el" href="structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be">gridfire::NetIn</a></li>
 <li>tMax&#160;:&#160;<a class="el" href="structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1">gridfire::NetIn</a></li>
-<li>type&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897">gridfire::expectations::EngineError</a></li>
+<li>type&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897">gridfire::expectations::EngineError</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a086720ca534bc4c63d9341995e2f87bd">gridfire::rates::weak::InterpolationError</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#ad0bb77849bda4934472675e196af87c8">gridfire::rates::weak::WeakReactionEntry</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_vars_u.html b/docs/html/functions_vars_u.html
index 5c922f42..30030da5 100644
--- a/docs/html/functions_vars_u.html
+++ b/docs/html/functions_vars_u.html
@@ -103,6 +103,7 @@ $(function(){initNavTree('functions_vars_u.html',''); initResizable(true); });
 
 <h3><a id="index_u" name="index_u"></a>- u -</h3><ul>
 <li>u&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html#a3597bc632a5dd50aaa0044d8c18ca423">gridfire::GraphEngine::constants</a></li>
+<li>u_to_MeV&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab7d46e02bb7264ff3aada6b3997b2ab1">gridfire::rates::weak::WeakReaction::constants</a></li>
 <li>unique_product_indices&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a9974f944a2cf5179baabebe09d60cf18">gridfire::GraphEngine::PrecomputedReaction</a></li>
 <li>unique_reactant_indices&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a510e380116e2e6d9158cf00fedac2666">gridfire::GraphEngine::PrecomputedReaction</a></li>
 <li>upperIndex&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#aa99e1fa2fd4937592c066b0df16f377f">gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope</a></li>
diff --git a/docs/html/functions_vars_v.html b/docs/html/functions_vars_v.html
new file mode 100644
index 00000000..29ce734f
--- /dev/null
+++ b/docs/html/functions_vars_v.html
@@ -0,0 +1,116 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Class Members - Variables</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('functions_vars_v.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all variables with links to the classes they belong to:</div>
+
+<h3><a id="index_v" name="index_v"></a>- v -</h3><ul>
+<li>value&#160;:&#160;<a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html#a372af12d705b623075c41872f3ec96e1">gridfire::trigger::TriggerResult</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/functions_vars_z.html b/docs/html/functions_vars_z.html
index 25f40969..9e0fce0e 100644
--- a/docs/html/functions_vars_z.html
+++ b/docs/html/functions_vars_z.html
@@ -102,6 +102,7 @@ $(function(){initNavTree('functions_vars_z.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all variables with links to the classes they belong to:</div>
 
 <h3><a id="index_z" name="index_z"></a>- z -</h3><ul>
+<li>Z&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a318b62e183dcb49c04260832454fa721">gridfire::rates::weak::RateDataRow</a></li>
 <li>z&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#abb1416e2d8d4d27264c9eece547006b6">gridfire::partition::record::RauscherThielemannPartitionDataRecord</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_w.html b/docs/html/functions_w.html
index 8890bf0b..4afee8d9 100644
--- a/docs/html/functions_w.html
+++ b/docs/html/functions_w.html
@@ -102,7 +102,11 @@ $(function(){initNavTree('functions_w.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
 
 <h3><a id="index_w" name="index_w"></a>- w -</h3><ul>
+<li>WeakRateInterpolator()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a1efafe82d25d36b93a60a6fccbd5ca3d">gridfire::rates::weak::WeakRateInterpolator</a></li>
+<li>WeakReaction()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a222c0662bf5323037c9fdddfb929d4f7">gridfire::rates::weak::WeakReaction</a></li>
+<li>WeakReactionMap()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#aecc8c1b92d63da87827879ad5330c11e">gridfire::rates::weak::WeakReactionMap</a></li>
 <li>what()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#afe87ef508f5b20ca99ec70510747caff">gridfire::exceptions::FailedToPartitionEngineError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1">gridfire::exceptions::NetworkResizedError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4">gridfire::exceptions::StaleEngineError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aac4899d001338688def2b809b55bb2ba">gridfire::exceptions::StaleEngineTrigger</a>, <a class="el" href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69">gridfire::exceptions::UnableToSetNetworkReactionsError</a></li>
+<li>why()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a01033721e8f5d90483d65c904399cf96">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a3bf0d69122f801deca4b62db47262d9b">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#abfb3eb7befba646ce9f11f36a63750ae">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a7bca0da16353f4b04a2f40fb29c07922">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3af973e466ba62ebf1e41c608355e327">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a9dfab0b765d3a4c362cecd860d59f58a">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a22d8bc7aacbc388108225c26158e918c">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/functions_z.html b/docs/html/functions_z.html
index 0a1bb76d..400dd400 100644
--- a/docs/html/functions_z.html
+++ b/docs/html/functions_z.html
@@ -102,6 +102,7 @@ $(function(){initNavTree('functions_z.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
 
 <h3><a id="index_z" name="index_z"></a>- z -</h3><ul>
+<li>Z&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a318b62e183dcb49c04260832454fa721">gridfire::rates::weak::RateDataRow</a></li>
 <li>z&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#abb1416e2d8d4d27264c9eece547006b6">gridfire::partition::record::RauscherThielemannPartitionDataRecord</a></li>
 </ul>
 </div><!-- contents -->
diff --git a/docs/html/functions_~.html b/docs/html/functions_~.html
index 095508f5..31056f5e 100644
--- a/docs/html/functions_~.html
+++ b/docs/html/functions_~.html
@@ -102,16 +102,26 @@ $(function(){initNavTree('functions_~.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
 
 <h3><a id="index__7E" name="index__7E"></a>- ~ -</h3><ul>
+<li>~AndTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a2ee18348ca65cc1aa56eb41292a39bc5">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>~ColumnBase()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_column_base.html#a704c1fc03271c14fc9f3da43612a1589">gridfire::utils::ColumnBase</a></li>
+<li>~CVODESolverStrategy()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aca2d01a907c3bb828f9f99ad05506578">gridfire::solver::CVODESolverStrategy</a></li>
 <li>~Engine()&#160;:&#160;<a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">gridfire::Engine</a></li>
 <li>~EngineError()&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897">gridfire::expectations::EngineError</a></li>
 <li>~EngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74">gridfire::EngineView&lt; EngineT &gt;</a></li>
+<li>~EveryNthTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae28e54330d575d9d1d3d8ebc6e7a6f75">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></li>
 <li>~Network()&#160;:&#160;<a class="el" href="classgridfire_1_1_network.html#ab8d83289b62dda9b4e02f25311f85b79">gridfire::Network</a></li>
 <li>~NetworkFileParser()&#160;:&#160;<a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3">gridfire::io::NetworkFileParser</a></li>
 <li>~NetworkSolverStrategy()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></li>
+<li>~NotTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#afa4173490171d1251cc1757b92841755">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>~OrTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#afe30f95de39c1375557d032b8a8111f9">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></li>
 <li>~PartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a197a0663dcfb4ab4be3b0e14b98391db">gridfire::partition::PartitionFunction</a></li>
+<li>~ReaclibReaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae2b9b41a598c5f0dcd050b32985ea44e">gridfire::reaction::ReaclibReaction</a></li>
 <li>~Reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a">gridfire::Reaction</a></li>
 <li>~ScreeningModel()&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7">gridfire::screening::ScreeningModel</a></li>
 <li>~SolverContextBase()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_solver_context_base.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8">gridfire::solver::SolverContextBase</a></li>
+<li>~SolverPluginInterface()&#160;:&#160;<a class="el" href="class_solver_plugin_interface.html#a5611d046cd2fd4d4200785725854e39b">SolverPluginInterface</a></li>
+<li>~Trigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
+<li>~WeakReactionMap()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a73cc5a9d4a236091bbb40f22ed66b2f1">gridfire::rates::weak::WeakReactionMap</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/globals.html b/docs/html/globals.html
index 7c14b32b..8cb70cb2 100644
--- a/docs/html/globals.html
+++ b/docs/html/globals.html
@@ -102,14 +102,19 @@ $(function(){initNavTree('globals.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all file members with links to the files they belong to:</div>
 
 <h3><a id="index_a" name="index_a"></a>- a -</h3><ul>
-<li>abs_stype_register_dynamic_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#a4066aaf2dca39ee1ed37ad53169f1cdf">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a4066aaf2dca39ee1ed37ad53169f1cdf">bindings.h</a></li>
-<li>abs_stype_register_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#a01ff627d4ef6a21b3323cd383dd29841">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a01ff627d4ef6a21b3323cd383dd29841">bindings.h</a></li>
+<li>abs_stype_register_dynamic_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#a7ba5eb780fc02dab2b7be388ffa084f8">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a7ba5eb780fc02dab2b7be388ffa084f8">bindings.h</a></li>
+<li>abs_stype_register_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#aef9864cec8e0891ee46c8a0d76de2c93">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#aef9864cec8e0891ee46c8a0d76de2c93">bindings.h</a></li>
 <li>ADDouble&#160;:&#160;<a class="el" href="py__screening_8cpp.html#a4c5a7b887f31226ce0b82409f819833b">py_screening.cpp</a></li>
 </ul>
 
 
 <h3><a id="index_c" name="index_c"></a>- c -</h3><ul>
-<li>con_stype_register_graph_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#a61b016667b7477d898be2a2a5bc7cab8">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a61b016667b7477d898be2a2a5bc7cab8">bindings.h</a></li>
+<li>con_stype_register_graph_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#a73d427751e6a64952d52e7c2cc84d065">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a73d427751e6a64952d52e7c2cc84d065">bindings.h</a></li>
+</ul>
+
+
+<h3><a id="index_g" name="index_g"></a>- g -</h3><ul>
+<li>GRIDFIRE_WEAK_REACTION_LIB_SENTINEL&#160;:&#160;<a class="el" href="weak_8h.html#a56d76d6c9aef1e09f707c836a157ff27">weak.h</a></li>
 </ul>
 
 
@@ -123,22 +128,22 @@ $(function(){initNavTree('globals.html',''); initResizable(true); });
 <li>rauscher_thielemann_partition_data_len&#160;:&#160;<a class="el" href="rauscher__thielemann__partition__data_8h.html#a5240736f3bdb43cf2cd63464c5835df1">rauscher_thielemann_partition_data.h</a></li>
 <li>raw_reactions_data&#160;:&#160;<a class="el" href="reactions__data_8h.html#aeb44e2b3b67960dfd83ecd7136c7d38b">reactions_data.h</a></li>
 <li>raw_reactions_data_len&#160;:&#160;<a class="el" href="reactions__data_8h.html#a32dea82d95667c3df395d58fb469ce2a">reactions_data.h</a></li>
-<li>register_base_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#a884aac3c3f2e8c62843c69329052d642">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a884aac3c3f2e8c62843c69329052d642">bindings.h</a></li>
-<li>register_composite_partition_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#afded1a99d32cbf8745a42e0a81891e18">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#afded1a99d32cbf8745a42e0a81891e18">bindings.h</a></li>
+<li>register_base_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#a766b8bf2c08f2e81486752261ec89642">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a766b8bf2c08f2e81486752261ec89642">bindings.h</a></li>
+<li>register_composite_partition_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#a9d0d58ff2233e31a4ad88cc418b5ca64">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#a9d0d58ff2233e31a4ad88cc418b5ca64">bindings.h</a></li>
 <li>register_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a73a2ec4150b3954550f16b97102ec993">bindings.h</a></li>
-<li>register_engine_view_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#a74a027923ac27f235cf565f8d2a355bd">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a74a027923ac27f235cf565f8d2a355bd">bindings.h</a></li>
-<li>register_exception_bindings()&#160;:&#160;<a class="el" href="exceptions_2bindings_8cpp.html#a15a0d54e4fe015a87d9f7a63284c2958">bindings.cpp</a>, <a class="el" href="exceptions_2bindings_8h.html#a01725278af607be0d8f5a2d892a5ef73">bindings.h</a></li>
-<li>register_expectation_bindings()&#160;:&#160;<a class="el" href="expectations_2bindings_8cpp.html#ac6720822f6ad76636adbc1ae6febc2c2">bindings.cpp</a>, <a class="el" href="expectations_2bindings_8h.html#a12e0304a6d29af179118a29c8ea93dc0">bindings.h</a></li>
-<li>register_ground_state_partition_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#ac36d0a5e8cb0122888fd218a143c7630">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#ac36d0a5e8cb0122888fd218a143c7630">bindings.h</a></li>
-<li>register_io_bindings()&#160;:&#160;<a class="el" href="io_2bindings_8cpp.html#a7f552627cbe94906e0ee98b121e77862">bindings.cpp</a>, <a class="el" href="io_2bindings_8h.html#a1d91b8298302b9f5401bf06c22651df4">bindings.h</a></li>
+<li>register_engine_view_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#ac12de48f4164b679dd7afb03c83ec4bf">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#ac12de48f4164b679dd7afb03c83ec4bf">bindings.h</a></li>
+<li>register_exception_bindings()&#160;:&#160;<a class="el" href="exceptions_2bindings_8cpp.html#a5566602745756f64f21905217b6d21fd">bindings.cpp</a>, <a class="el" href="exceptions_2bindings_8h.html#a2a0ce1da699ce25f3afdce57cde65471">bindings.h</a></li>
+<li>register_expectation_bindings()&#160;:&#160;<a class="el" href="expectations_2bindings_8cpp.html#ad8b382f2ef7888e5b49bcc117439d843">bindings.cpp</a>, <a class="el" href="expectations_2bindings_8h.html#ac4570540d44fb7e3136f63448fc2c22c">bindings.h</a></li>
+<li>register_ground_state_partition_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#ac0a1def5c77c5554187c9d4f26fce77e">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#ac0a1def5c77c5554187c9d4f26fce77e">bindings.h</a></li>
+<li>register_io_bindings()&#160;:&#160;<a class="el" href="io_2bindings_8cpp.html#a3f76dbefdeeb3b49828ce36586899695">bindings.cpp</a>, <a class="el" href="io_2bindings_8h.html#aba28f9bd688764ab1905af9d40d4b428">bindings.h</a></li>
 <li>register_partition_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#a2806baaec82e0e6d66b80348584e08fd">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#a2806baaec82e0e6d66b80348584e08fd">bindings.h</a></li>
 <li>register_partition_types_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#a4c0db94b56a3b02482ac4fd654680cca">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#a4c0db94b56a3b02482ac4fd654680cca">bindings.h</a></li>
-<li>register_rauscher_thielemann_partition_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#a4e56b30b36165067cf413787a55b9ecb">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#a4e56b30b36165067cf413787a55b9ecb">bindings.h</a></li>
-<li>register_rauscher_thielemann_partition_data_record_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#ae405682b0e35624397583048f4d40f75">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#ae405682b0e35624397583048f4d40f75">bindings.h</a></li>
+<li>register_rauscher_thielemann_partition_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#ae1665331725ff38c39d7d3eec551ec97">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#ae1665331725ff38c39d7d3eec551ec97">bindings.h</a></li>
+<li>register_rauscher_thielemann_partition_data_record_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#a294e2893e79c41c10f914467d4858c1a">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#a294e2893e79c41c10f914467d4858c1a">bindings.h</a></li>
 <li>register_reaction_bindings()&#160;:&#160;<a class="el" href="reaction_2bindings_8cpp.html#ae174b115814ec42920a799881cef1efa">bindings.cpp</a>, <a class="el" href="reaction_2bindings_8h.html#a221d509fd54278898e2cbb73663f53d0">bindings.h</a></li>
 <li>register_screening_bindings()&#160;:&#160;<a class="el" href="screening_2bindings_8cpp.html#a4fcef69d9382bfbc315cb061038627f4">bindings.cpp</a>, <a class="el" href="screening_2bindings_8h.html#a9e1a938ffee0a1b9d913fa4968865b1b">bindings.h</a></li>
 <li>register_solver_bindings()&#160;:&#160;<a class="el" href="solver_2bindings_8cpp.html#a722d28831d82cd075081fcf4b403479d">bindings.cpp</a>, <a class="el" href="solver_2bindings_8h.html#a7ff40d9e08fcb5028e914045447d46d3">bindings.h</a></li>
-<li>register_type_bindings()&#160;:&#160;<a class="el" href="types_2bindings_8cpp.html#a37d2e0b6a2605d063eec5e2a64e9bcc5">bindings.cpp</a>, <a class="el" href="types_2bindings_8h.html#a37d2e0b6a2605d063eec5e2a64e9bcc5">bindings.h</a></li>
+<li>register_type_bindings()&#160;:&#160;<a class="el" href="types_2bindings_8cpp.html#aa0589677938fad59ffce3f6981f53ff0">bindings.cpp</a>, <a class="el" href="types_2bindings_8h.html#aa0589677938fad59ffce3f6981f53ff0">bindings.h</a></li>
 <li>register_utils_bindings()&#160;:&#160;<a class="el" href="utils_2bindings_8cpp.html#a7af842f50ca4a721518e716d0229697c">bindings.cpp</a>, <a class="el" href="utils_2bindings_8h.html#a9eefca377142320755a869fafc6311c7">bindings.h</a></li>
 </ul>
 
diff --git a/docs/html/globals_defs.html b/docs/html/globals_defs.html
new file mode 100644
index 00000000..3b32f438
--- /dev/null
+++ b/docs/html/globals_defs.html
@@ -0,0 +1,114 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: File Members</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('globals_defs.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="contents">
+<div class="textblock">Here is a list of all macros with links to the files they belong to:</div><ul>
+<li>GRIDFIRE_WEAK_REACTION_LIB_SENTINEL&#160;:&#160;<a class="el" href="weak_8h.html#a56d76d6c9aef1e09f707c836a157ff27">weak.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/globals_func.html b/docs/html/globals_func.html
index ce7ba516..52d6a031 100644
--- a/docs/html/globals_func.html
+++ b/docs/html/globals_func.html
@@ -102,13 +102,13 @@ $(function(){initNavTree('globals_func.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the files they belong to:</div>
 
 <h3><a id="index_a" name="index_a"></a>- a -</h3><ul>
-<li>abs_stype_register_dynamic_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#a4066aaf2dca39ee1ed37ad53169f1cdf">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a4066aaf2dca39ee1ed37ad53169f1cdf">bindings.h</a></li>
-<li>abs_stype_register_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#a01ff627d4ef6a21b3323cd383dd29841">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a01ff627d4ef6a21b3323cd383dd29841">bindings.h</a></li>
+<li>abs_stype_register_dynamic_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#a7ba5eb780fc02dab2b7be388ffa084f8">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a7ba5eb780fc02dab2b7be388ffa084f8">bindings.h</a></li>
+<li>abs_stype_register_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#aef9864cec8e0891ee46c8a0d76de2c93">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#aef9864cec8e0891ee46c8a0d76de2c93">bindings.h</a></li>
 </ul>
 
 
 <h3><a id="index_c" name="index_c"></a>- c -</h3><ul>
-<li>con_stype_register_graph_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#a61b016667b7477d898be2a2a5bc7cab8">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a61b016667b7477d898be2a2a5bc7cab8">bindings.h</a></li>
+<li>con_stype_register_graph_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#a73d427751e6a64952d52e7c2cc84d065">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a73d427751e6a64952d52e7c2cc84d065">bindings.h</a></li>
 </ul>
 
 
@@ -118,22 +118,22 @@ $(function(){initNavTree('globals_func.html',''); initResizable(true); });
 
 
 <h3><a id="index_r" name="index_r"></a>- r -</h3><ul>
-<li>register_base_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#a884aac3c3f2e8c62843c69329052d642">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a884aac3c3f2e8c62843c69329052d642">bindings.h</a></li>
-<li>register_composite_partition_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#afded1a99d32cbf8745a42e0a81891e18">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#afded1a99d32cbf8745a42e0a81891e18">bindings.h</a></li>
+<li>register_base_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#a766b8bf2c08f2e81486752261ec89642">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a766b8bf2c08f2e81486752261ec89642">bindings.h</a></li>
+<li>register_composite_partition_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#a9d0d58ff2233e31a4ad88cc418b5ca64">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#a9d0d58ff2233e31a4ad88cc418b5ca64">bindings.h</a></li>
 <li>register_engine_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a73a2ec4150b3954550f16b97102ec993">bindings.h</a></li>
-<li>register_engine_view_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#a74a027923ac27f235cf565f8d2a355bd">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#a74a027923ac27f235cf565f8d2a355bd">bindings.h</a></li>
-<li>register_exception_bindings()&#160;:&#160;<a class="el" href="exceptions_2bindings_8cpp.html#a15a0d54e4fe015a87d9f7a63284c2958">bindings.cpp</a>, <a class="el" href="exceptions_2bindings_8h.html#a01725278af607be0d8f5a2d892a5ef73">bindings.h</a></li>
-<li>register_expectation_bindings()&#160;:&#160;<a class="el" href="expectations_2bindings_8cpp.html#ac6720822f6ad76636adbc1ae6febc2c2">bindings.cpp</a>, <a class="el" href="expectations_2bindings_8h.html#a12e0304a6d29af179118a29c8ea93dc0">bindings.h</a></li>
-<li>register_ground_state_partition_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#ac36d0a5e8cb0122888fd218a143c7630">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#ac36d0a5e8cb0122888fd218a143c7630">bindings.h</a></li>
-<li>register_io_bindings()&#160;:&#160;<a class="el" href="io_2bindings_8cpp.html#a7f552627cbe94906e0ee98b121e77862">bindings.cpp</a>, <a class="el" href="io_2bindings_8h.html#a1d91b8298302b9f5401bf06c22651df4">bindings.h</a></li>
+<li>register_engine_view_bindings()&#160;:&#160;<a class="el" href="engine_2bindings_8cpp.html#ac12de48f4164b679dd7afb03c83ec4bf">bindings.cpp</a>, <a class="el" href="engine_2bindings_8h.html#ac12de48f4164b679dd7afb03c83ec4bf">bindings.h</a></li>
+<li>register_exception_bindings()&#160;:&#160;<a class="el" href="exceptions_2bindings_8cpp.html#a5566602745756f64f21905217b6d21fd">bindings.cpp</a>, <a class="el" href="exceptions_2bindings_8h.html#a2a0ce1da699ce25f3afdce57cde65471">bindings.h</a></li>
+<li>register_expectation_bindings()&#160;:&#160;<a class="el" href="expectations_2bindings_8cpp.html#ad8b382f2ef7888e5b49bcc117439d843">bindings.cpp</a>, <a class="el" href="expectations_2bindings_8h.html#ac4570540d44fb7e3136f63448fc2c22c">bindings.h</a></li>
+<li>register_ground_state_partition_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#ac0a1def5c77c5554187c9d4f26fce77e">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#ac0a1def5c77c5554187c9d4f26fce77e">bindings.h</a></li>
+<li>register_io_bindings()&#160;:&#160;<a class="el" href="io_2bindings_8cpp.html#a3f76dbefdeeb3b49828ce36586899695">bindings.cpp</a>, <a class="el" href="io_2bindings_8h.html#aba28f9bd688764ab1905af9d40d4b428">bindings.h</a></li>
 <li>register_partition_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#a2806baaec82e0e6d66b80348584e08fd">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#a2806baaec82e0e6d66b80348584e08fd">bindings.h</a></li>
 <li>register_partition_types_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#a4c0db94b56a3b02482ac4fd654680cca">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#a4c0db94b56a3b02482ac4fd654680cca">bindings.h</a></li>
-<li>register_rauscher_thielemann_partition_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#a4e56b30b36165067cf413787a55b9ecb">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#a4e56b30b36165067cf413787a55b9ecb">bindings.h</a></li>
-<li>register_rauscher_thielemann_partition_data_record_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#ae405682b0e35624397583048f4d40f75">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#ae405682b0e35624397583048f4d40f75">bindings.h</a></li>
+<li>register_rauscher_thielemann_partition_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#ae1665331725ff38c39d7d3eec551ec97">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#ae1665331725ff38c39d7d3eec551ec97">bindings.h</a></li>
+<li>register_rauscher_thielemann_partition_data_record_bindings()&#160;:&#160;<a class="el" href="partition_2bindings_8cpp.html#a294e2893e79c41c10f914467d4858c1a">bindings.cpp</a>, <a class="el" href="partition_2bindings_8h.html#a294e2893e79c41c10f914467d4858c1a">bindings.h</a></li>
 <li>register_reaction_bindings()&#160;:&#160;<a class="el" href="reaction_2bindings_8cpp.html#ae174b115814ec42920a799881cef1efa">bindings.cpp</a>, <a class="el" href="reaction_2bindings_8h.html#a221d509fd54278898e2cbb73663f53d0">bindings.h</a></li>
 <li>register_screening_bindings()&#160;:&#160;<a class="el" href="screening_2bindings_8cpp.html#a4fcef69d9382bfbc315cb061038627f4">bindings.cpp</a>, <a class="el" href="screening_2bindings_8h.html#a9e1a938ffee0a1b9d913fa4968865b1b">bindings.h</a></li>
 <li>register_solver_bindings()&#160;:&#160;<a class="el" href="solver_2bindings_8cpp.html#a722d28831d82cd075081fcf4b403479d">bindings.cpp</a>, <a class="el" href="solver_2bindings_8h.html#a7ff40d9e08fcb5028e914045447d46d3">bindings.h</a></li>
-<li>register_type_bindings()&#160;:&#160;<a class="el" href="types_2bindings_8cpp.html#a37d2e0b6a2605d063eec5e2a64e9bcc5">bindings.cpp</a>, <a class="el" href="types_2bindings_8h.html#a37d2e0b6a2605d063eec5e2a64e9bcc5">bindings.h</a></li>
+<li>register_type_bindings()&#160;:&#160;<a class="el" href="types_2bindings_8cpp.html#aa0589677938fad59ffce3f6981f53ff0">bindings.cpp</a>, <a class="el" href="types_2bindings_8h.html#aa0589677938fad59ffce3f6981f53ff0">bindings.h</a></li>
 <li>register_utils_bindings()&#160;:&#160;<a class="el" href="utils_2bindings_8cpp.html#a7af842f50ca4a721518e716d0229697c">bindings.cpp</a>, <a class="el" href="utils_2bindings_8h.html#a9eefca377142320755a869fafc6311c7">bindings.h</a></li>
 </ul>
 
diff --git a/docs/html/hierarchy.html b/docs/html/hierarchy.html
index b303fb4b..96a8d982 100644
--- a/docs/html/hierarchy.html
+++ b/docs/html/hierarchy.html
@@ -107,88 +107,118 @@ $(function(){initNavTree('hierarchy.html',''); initResizable(true); });
 <tr id="row_0_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html" target="_self">gridfire::approx8::Approx8Net</a></td><td class="desc">Contains constants and arrays related to the nuclear network </td></tr>
 <tr id="row_1_" class="odd"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_1_" class="arrow" onclick="dynsection.toggleFolder('1_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><b>CppAD::atomic_base</b></td><td class="desc"></td></tr>
 <tr id="row_1_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html" target="_self">gridfire::GraphEngine::AtomicReverseRate</a></td><td class="desc"></td></tr>
-<tr id="row_2_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html" target="_self">gridfire::MultiscalePartitioningEngineView::CacheStats</a></td><td class="desc">Struct for tracking cache statistics </td></tr>
-<tr id="row_3_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html" target="_self">gridfire::GraphEngine::constants</a></td><td class="desc"></td></tr>
-<tr id="row_4_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html" target="_self">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="desc">Functor for solving QSE abundances using Eigen's nonlinear optimization </td></tr>
-<tr id="row_5_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_5_" class="arrow" onclick="dynsection.toggleFolder('5_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_engine.html" target="_self">gridfire::Engine</a></td><td class="desc">Abstract base class for a reaction network engine </td></tr>
-<tr id="row_5_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_engine.html" target="_self">PyEngine</a></td><td class="desc"></td></tr>
-<tr id="row_5_1_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_5_1_" class="arrow" onclick="dynsection.toggleFolder('5_1_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_dynamic_engine.html" target="_self">gridfire::DynamicEngine</a></td><td class="desc">Abstract class for engines supporting Jacobian and stoichiometry operations </td></tr>
-<tr id="row_5_1_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_dynamic_engine.html" target="_self">PyDynamicEngine</a></td><td class="desc"></td></tr>
-<tr id="row_5_1_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_adaptive_engine_view.html" target="_self">gridfire::AdaptiveEngineView</a></td><td class="desc">An engine view that dynamically adapts the reaction network based on runtime conditions </td></tr>
-<tr id="row_5_1_2_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_5_1_2_" class="arrow" onclick="dynsection.toggleFolder('5_1_2_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_defined_engine_view.html" target="_self">gridfire::DefinedEngineView</a></td><td class="desc"></td></tr>
-<tr id="row_5_1_2_0_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_file_defined_engine_view.html" target="_self">gridfire::FileDefinedEngineView</a></td><td class="desc"></td></tr>
-<tr id="row_5_1_2_1_" class="odd"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_network_priming_engine_view.html" target="_self">gridfire::NetworkPrimingEngineView</a></td><td class="desc">Provides a view of a <a class="el" href="classgridfire_1_1_dynamic_engine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> filtered to reactions involving a specified priming species </td></tr>
-<tr id="row_5_1_3_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_graph_engine.html" target="_self">gridfire::GraphEngine</a></td><td class="desc">A reaction network engine that uses a graph-based representation </td></tr>
-<tr id="row_5_1_4_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html" target="_self">gridfire::MultiscalePartitioningEngineView</a></td><td class="desc">An engine view that partitions the reaction network into multiple groups based on timescales </td></tr>
-<tr id="row_6_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_6_" class="arrow" onclick="dynsection.toggleFolder('6_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html" target="_self">gridfire::expectations::EngineError</a></td><td class="desc"></td></tr>
-<tr id="row_6_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html" target="_self">gridfire::expectations::EngineIndexError</a></td><td class="desc"></td></tr>
-<tr id="row_6_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html" target="_self">gridfire::expectations::StaleEngineError</a></td><td class="desc"></td></tr>
-<tr id="row_7_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_engine_view.html" target="_self">gridfire::EngineView&lt; EngineT &gt;</a></td><td class="desc">Abstract base class for a "view" of a reaction network engine </td></tr>
-<tr id="row_8_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_8_" class="arrow" onclick="dynsection.toggleFolder('8_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_engine_view.html" target="_self">gridfire::EngineView&lt; DynamicEngine &gt;</a></td><td class="desc"></td></tr>
-<tr id="row_8_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_adaptive_engine_view.html" target="_self">gridfire::AdaptiveEngineView</a></td><td class="desc">An engine view that dynamically adapts the reaction network based on runtime conditions </td></tr>
-<tr id="row_8_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_defined_engine_view.html" target="_self">gridfire::DefinedEngineView</a></td><td class="desc"></td></tr>
-<tr id="row_8_2_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html" target="_self">gridfire::MultiscalePartitioningEngineView</a></td><td class="desc">An engine view that partitions the reaction network into multiple groups based on timescales </td></tr>
-<tr id="row_9_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_9_" class="arrow" onclick="dynsection.toggleFolder('9_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_engine_view.html" target="_self">gridfire::EngineView&lt; gridfire::DynamicEngine &gt;</a></td><td class="desc"></td></tr>
-<tr id="row_9_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_dynamic_engine_view.html" target="_self">PyDynamicEngineView</a></td><td class="desc"></td></tr>
-<tr id="row_10_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_10_" class="arrow" onclick="dynsection.toggleFolder('10_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_engine_view.html" target="_self">gridfire::EngineView&lt; gridfire::Engine &gt;</a></td><td class="desc"></td></tr>
-<tr id="row_10_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_engine_view.html" target="_self">PyEngineView</a></td><td class="desc"></td></tr>
-<tr id="row_11_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_11_" class="arrow" onclick="dynsection.toggleFolder('11_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><b>std::exception</b></td><td class="desc">STL class </td></tr>
-<tr id="row_11_0_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_11_0_" class="arrow" onclick="dynsection.toggleFolder('11_0_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_engine_error.html" target="_self">gridfire::exceptions::EngineError</a></td><td class="desc"></td></tr>
-<tr id="row_11_0_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html" target="_self">gridfire::exceptions::FailedToPartitionEngineError</a></td><td class="desc"></td></tr>
-<tr id="row_11_0_1_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html" target="_self">gridfire::exceptions::NetworkResizedError</a></td><td class="desc"></td></tr>
-<tr id="row_11_0_2_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_error.html" target="_self">gridfire::exceptions::StaleEngineError</a></td><td class="desc"></td></tr>
-<tr id="row_11_0_3_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html" target="_self">gridfire::exceptions::StaleEngineTrigger</a></td><td class="desc"></td></tr>
-<tr id="row_11_0_4_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html" target="_self">gridfire::exceptions::UnableToSetNetworkReactionsError</a></td><td class="desc"></td></tr>
-<tr id="row_12_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html" target="_self">std::hash&lt; gridfire::QSECacheKey &gt;</a></td><td class="desc"></td></tr>
-<tr id="row_13_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html" target="_self">std::hash&lt; gridfire::reaction::LogicalReactionSet &gt;</a></td><td class="desc"></td></tr>
-<tr id="row_14_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html" target="_self">std::hash&lt; gridfire::reaction::Reaction &gt;</a></td><td class="desc"></td></tr>
-<tr id="row_15_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html" target="_self">std::hash&lt; gridfire::reaction::ReactionSet &gt;</a></td><td class="desc"></td></tr>
-<tr id="row_16_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html" target="_self">gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope</a></td><td class="desc"></td></tr>
-<tr id="row_17_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html" target="_self">gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints</a></td><td class="desc"></td></tr>
-<tr id="row_18_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html" target="_self">gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData</a></td><td class="desc"></td></tr>
-<tr id="row_19_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1approx8_1_1_jacobian.html" target="_self">gridfire::approx8::Jacobian</a></td><td class="desc">Functor to calculate the <a class="el" href="structgridfire_1_1approx8_1_1_jacobian.html" title="Functor to calculate the Jacobian matrix for implicit solvers.">Jacobian</a> matrix for implicit solvers </td></tr>
-<tr id="row_20_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html" target="_self">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a></td><td class="desc">Functor for calculating the Jacobian matrix </td></tr>
-<tr id="row_21_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_net_in.html" target="_self">gridfire::NetIn</a></td><td class="desc"></td></tr>
-<tr id="row_22_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_net_out.html" target="_self">gridfire::NetOut</a></td><td class="desc"></td></tr>
-<tr id="row_23_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_23_" class="arrow" onclick="dynsection.toggleFolder('23_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_network.html" target="_self">gridfire::Network</a></td><td class="desc"></td></tr>
-<tr id="row_23_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html" target="_self">gridfire::approx8::Approx8Network</a></td><td class="desc">Class for the Approx8 nuclear reaction network </td></tr>
-<tr id="row_24_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_24_" class="arrow" onclick="dynsection.toggleFolder('24_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html" target="_self">gridfire::io::NetworkFileParser</a></td><td class="desc">An abstract base class for network file parsers </td></tr>
-<tr id="row_24_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_network_file_parser.html" target="_self">PyNetworkFileParser</a></td><td class="desc"></td></tr>
-<tr id="row_24_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html" target="_self">gridfire::io::MESANetworkFileParser</a></td><td class="desc">A parser for MESA-format network files </td></tr>
-<tr id="row_24_2_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html" target="_self">gridfire::io::SimpleReactionListFileParser</a></td><td class="desc">A parser for simple text files containing a list of reactions </td></tr>
-<tr id="row_25_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html" target="_self">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td><td class="desc">Abstract base class for network solver strategies </td></tr>
-<tr id="row_26_" class="odd"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_26_" class="arrow" onclick="dynsection.toggleFolder('26_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html" target="_self">gridfire::solver::NetworkSolverStrategy&lt; DynamicEngine &gt;</a></td><td class="desc"></td></tr>
-<tr id="row_26_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_dynamic_network_solver_strategy.html" target="_self">PyDynamicNetworkSolverStrategy</a></td><td class="desc"></td></tr>
-<tr id="row_26_1_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html" target="_self">gridfire::solver::DirectNetworkSolver</a></td><td class="desc">A network solver that directly integrates the reaction network ODEs </td></tr>
-<tr id="row_27_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1approx8_1_1_o_d_e.html" target="_self">gridfire::approx8::ODE</a></td><td class="desc">Functor to calculate the derivatives for the <a class="el" href="structgridfire_1_1approx8_1_1_o_d_e.html" title="Functor to calculate the derivatives for the ODE solver.">ODE</a> solver </td></tr>
-<tr id="row_28_" class="odd"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_28_" class="arrow" onclick="dynsection.toggleFolder('28_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1partition_1_1_partition_function.html" target="_self">gridfire::partition::PartitionFunction</a></td><td class="desc">Abstract interface for evaluating nuclear partition functions </td></tr>
-<tr id="row_28_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_partition_function.html" target="_self">PyPartitionFunction</a></td><td class="desc"></td></tr>
-<tr id="row_28_1_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html" target="_self">gridfire::partition::CompositePartitionFunction</a></td><td class="desc">Combines multiple <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html" title="Abstract interface for evaluating nuclear partition functions.">PartitionFunction</a> instances into a single composite strategy </td></tr>
-<tr id="row_28_2_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html" target="_self">gridfire::partition::GroundStatePartitionFunction</a></td><td class="desc">Partition function implementation for nuclear ground states </td></tr>
-<tr id="row_28_3_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html" target="_self">gridfire::partition::RauscherThielemannPartitionFunction</a></td><td class="desc">Partition function using Rauscher-Thielemann tabulated normalized G-values </td></tr>
-<tr id="row_29_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html" target="_self">gridfire::GraphEngine::PrecomputedReaction</a></td><td class="desc"></td></tr>
-<tr id="row_30_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_priming_report.html" target="_self">gridfire::PrimingReport</a></td><td class="desc">Captures the result of a network priming operation </td></tr>
-<tr id="row_31_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_q_s_e_cache_config.html" target="_self">gridfire::QSECacheConfig</a></td><td class="desc">Configuration struct for the QSE cache </td></tr>
-<tr id="row_32_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_q_s_e_cache_key.html" target="_self">gridfire::QSECacheKey</a></td><td class="desc">Key struct for the QSE abundance cache </td></tr>
-<tr id="row_33_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html" target="_self">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="desc">Struct representing a QSE group </td></tr>
-<tr id="row_34_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html" target="_self">gridfire::reaction::RateCoefficientSet</a></td><td class="desc">Holds the seven coefficients for the REACLIB rate equation </td></tr>
-<tr id="row_35_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html" target="_self">gridfire::partition::record::RauscherThielemannPartitionDataRecord</a></td><td class="desc">Packed binary record of Rauscher-Thielemann partition function data for an isotope </td></tr>
-<tr id="row_36_" class="odd"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_36_" class="arrow" onclick="dynsection.toggleFolder('36_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_reaction.html" target="_self">gridfire::Reaction</a></td><td class="desc">Represents a single nuclear reaction from a specific data source </td></tr>
-<tr id="row_36_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html" target="_self">gridfire::reaction::LogicalReaction</a></td><td class="desc">Represents a "logical" reaction that aggregates rates from multiple sources </td></tr>
-<tr id="row_37_" class="odd"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_37_" class="arrow" onclick="dynsection.toggleFolder('37_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" target="_self">gridfire::reaction::Reaction</a></td><td class="desc">Represents a single nuclear reaction from a specific data source </td></tr>
-<tr id="row_37_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html" target="_self">gridfire::reaction::LogicalReaction</a></td><td class="desc">Represents a "logical" reaction that aggregates rates from multiple sources </td></tr>
-<tr id="row_38_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html" target="_self">gridfire::AdaptiveEngineView::ReactionFlow</a></td><td class="desc">A struct to hold a reaction and its flow rate </td></tr>
-<tr id="row_39_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html" target="_self">gridfire::reaclib::ReactionRecord</a></td><td class="desc"></td></tr>
-<tr id="row_40_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html" target="_self">gridfire::solver::DirectNetworkSolver::RHSManager</a></td><td class="desc">Functor for calculating the right-hand side of the ODEs </td></tr>
-<tr id="row_41_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_41_" class="arrow" onclick="dynsection.toggleFolder('41_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html" target="_self">gridfire::screening::ScreeningModel</a></td><td class="desc">An abstract base class for plasma screening models </td></tr>
-<tr id="row_41_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_screening.html" target="_self">PyScreening</a></td><td class="desc"></td></tr>
-<tr id="row_41_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html" target="_self">gridfire::screening::BareScreeningModel</a></td><td class="desc">A screening model that applies no screening effect </td></tr>
-<tr id="row_41_2_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html" target="_self">gridfire::screening::WeakScreeningModel</a></td><td class="desc">Implements the weak screening model based on the Debye-Hückel approximation </td></tr>
-<tr id="row_42_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_42_" class="arrow" onclick="dynsection.toggleFolder('42_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1solver_1_1_solver_context_base.html" target="_self">gridfire::solver::SolverContextBase</a></td><td class="desc">Base class for solver callback contexts </td></tr>
-<tr id="row_42_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html" target="_self">gridfire::solver::DirectNetworkSolver::TimestepContext</a></td><td class="desc">Context for the timestep callback function for the <a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html" title="A network solver that directly integrates the reaction network ODEs.">DirectNetworkSolver</a> </td></tr>
-<tr id="row_43_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html" target="_self">gridfire::exceptions::StaleEngineTrigger::state</a></td><td class="desc"></td></tr>
-<tr id="row_44_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_step_derivatives.html" target="_self">gridfire::StepDerivatives&lt; T &gt;</a></td><td class="desc">Structure holding derivatives and energy generation for a network step </td></tr>
-<tr id="row_45_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html" target="_self">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html" target="_self">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="desc">CppAD atomic that wraps weak-rate interpolation for AD evaluation </td></tr>
+<tr id="row_2_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html" target="_self">gridfire::rates::weak::BoundsErrorInfo</a></td><td class="desc">Detailed bounds information for a BOUNDS_ERROR </td></tr>
+<tr id="row_3_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html" target="_self">gridfire::MultiscalePartitioningEngineView::CacheStats</a></td><td class="desc">Struct for tracking cache statistics </td></tr>
+<tr id="row_4_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_4_" class="arrow" onclick="dynsection.toggleFolder('4_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1utils_1_1_column_base.html" target="_self">gridfire::utils::ColumnBase</a></td><td class="desc"></td></tr>
+<tr id="row_4_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1utils_1_1_column.html" target="_self">gridfire::utils::Column&lt; T &gt;</a></td><td class="desc"></td></tr>
+<tr id="row_5_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html" target="_self">gridfire::GraphEngine::constants</a></td><td class="desc"></td></tr>
+<tr id="row_6_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html" target="_self">gridfire::rates::weak::WeakReaction::constants</a></td><td class="desc"></td></tr>
+<tr id="row_7_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html" target="_self">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td><td class="desc">A helper struct to pass C++ context to C-style CVODE callbacks </td></tr>
+<tr id="row_8_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html" target="_self">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="desc">Functor for solving QSE abundances using Eigen's nonlinear optimization </td></tr>
+<tr id="row_9_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_energy_derivatives.html" target="_self">gridfire::EnergyDerivatives</a></td><td class="desc"></td></tr>
+<tr id="row_10_" class="odd"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_10_" class="arrow" onclick="dynsection.toggleFolder('10_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_engine.html" target="_self">gridfire::Engine</a></td><td class="desc">Abstract base class for a reaction network engine </td></tr>
+<tr id="row_10_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_engine.html" target="_self">PyEngine</a></td><td class="desc"></td></tr>
+<tr id="row_10_1_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_10_1_" class="arrow" onclick="dynsection.toggleFolder('10_1_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_dynamic_engine.html" target="_self">gridfire::DynamicEngine</a></td><td class="desc">Abstract class for engines supporting Jacobian and stoichiometry operations </td></tr>
+<tr id="row_10_1_0_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_dynamic_engine.html" target="_self">PyDynamicEngine</a></td><td class="desc"></td></tr>
+<tr id="row_10_1_1_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_adaptive_engine_view.html" target="_self">gridfire::AdaptiveEngineView</a></td><td class="desc">An engine view that dynamically adapts the reaction network based on runtime conditions </td></tr>
+<tr id="row_10_1_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_10_1_2_" class="arrow" onclick="dynsection.toggleFolder('10_1_2_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_defined_engine_view.html" target="_self">gridfire::DefinedEngineView</a></td><td class="desc"></td></tr>
+<tr id="row_10_1_2_0_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_file_defined_engine_view.html" target="_self">gridfire::FileDefinedEngineView</a></td><td class="desc"></td></tr>
+<tr id="row_10_1_2_1_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_network_priming_engine_view.html" target="_self">gridfire::NetworkPrimingEngineView</a></td><td class="desc">Provides a view of a <a class="el" href="classgridfire_1_1_dynamic_engine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> filtered to reactions involving a specified priming species </td></tr>
+<tr id="row_10_1_3_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_graph_engine.html" target="_self">gridfire::GraphEngine</a></td><td class="desc">A reaction network engine that uses a graph-based representation </td></tr>
+<tr id="row_10_1_4_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html" target="_self">gridfire::MultiscalePartitioningEngineView</a></td><td class="desc">An engine view that partitions the reaction network into multiple groups based on timescales </td></tr>
+<tr id="row_11_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_11_" class="arrow" onclick="dynsection.toggleFolder('11_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html" target="_self">gridfire::expectations::EngineError</a></td><td class="desc"></td></tr>
+<tr id="row_11_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html" target="_self">gridfire::expectations::EngineIndexError</a></td><td class="desc"></td></tr>
+<tr id="row_11_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html" target="_self">gridfire::expectations::StaleEngineError</a></td><td class="desc"></td></tr>
+<tr id="row_12_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_engine_view.html" target="_self">gridfire::EngineView&lt; EngineT &gt;</a></td><td class="desc">Abstract base class for a "view" of a reaction network engine </td></tr>
+<tr id="row_13_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_13_" class="arrow" onclick="dynsection.toggleFolder('13_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_engine_view.html" target="_self">gridfire::EngineView&lt; DynamicEngine &gt;</a></td><td class="desc"></td></tr>
+<tr id="row_13_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_adaptive_engine_view.html" target="_self">gridfire::AdaptiveEngineView</a></td><td class="desc">An engine view that dynamically adapts the reaction network based on runtime conditions </td></tr>
+<tr id="row_13_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_defined_engine_view.html" target="_self">gridfire::DefinedEngineView</a></td><td class="desc"></td></tr>
+<tr id="row_13_2_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html" target="_self">gridfire::MultiscalePartitioningEngineView</a></td><td class="desc">An engine view that partitions the reaction network into multiple groups based on timescales </td></tr>
+<tr id="row_14_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_14_" class="arrow" onclick="dynsection.toggleFolder('14_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_engine_view.html" target="_self">gridfire::EngineView&lt; gridfire::DynamicEngine &gt;</a></td><td class="desc"></td></tr>
+<tr id="row_14_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_dynamic_engine_view.html" target="_self">PyDynamicEngineView</a></td><td class="desc"></td></tr>
+<tr id="row_15_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_15_" class="arrow" onclick="dynsection.toggleFolder('15_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_engine_view.html" target="_self">gridfire::EngineView&lt; gridfire::Engine &gt;</a></td><td class="desc"></td></tr>
+<tr id="row_15_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_engine_view.html" target="_self">PyEngineView</a></td><td class="desc"></td></tr>
+<tr id="row_16_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_16_" class="arrow" onclick="dynsection.toggleFolder('16_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><b>std::exception</b></td><td class="desc">STL class </td></tr>
+<tr id="row_16_0_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_16_0_" class="arrow" onclick="dynsection.toggleFolder('16_0_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_engine_error.html" target="_self">gridfire::exceptions::EngineError</a></td><td class="desc"></td></tr>
+<tr id="row_16_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html" target="_self">gridfire::exceptions::FailedToPartitionEngineError</a></td><td class="desc"></td></tr>
+<tr id="row_16_0_1_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html" target="_self">gridfire::exceptions::NetworkResizedError</a></td><td class="desc"></td></tr>
+<tr id="row_16_0_2_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_error.html" target="_self">gridfire::exceptions::StaleEngineError</a></td><td class="desc"></td></tr>
+<tr id="row_16_0_3_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html" target="_self">gridfire::exceptions::StaleEngineTrigger</a></td><td class="desc"></td></tr>
+<tr id="row_16_0_4_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html" target="_self">gridfire::exceptions::UnableToSetNetworkReactionsError</a></td><td class="desc"></td></tr>
+<tr id="row_17_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html" target="_self">std::hash&lt; gridfire::QSECacheKey &gt;</a></td><td class="desc"></td></tr>
+<tr id="row_18_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html" target="_self">std::hash&lt; gridfire::reaction::Reaction &gt;</a></td><td class="desc"></td></tr>
+<tr id="row_19_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html" target="_self">std::hash&lt; gridfire::reaction::ReactionSet &gt;</a></td><td class="desc"></td></tr>
+<tr id="row_20_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html" target="_self">gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope</a></td><td class="desc"></td></tr>
+<tr id="row_21_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html" target="_self">gridfire::rates::weak::InterpolationError</a></td><td class="desc">Interpolation error with optional per-axis bounds details </td></tr>
+<tr id="row_22_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html" target="_self">gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints</a></td><td class="desc"></td></tr>
+<tr id="row_23_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html" target="_self">gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData</a></td><td class="desc"></td></tr>
+<tr id="row_24_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html" target="_self">gridfire::rates::weak::IsotopeGrid</a></td><td class="desc">Regular 3D grid and payloads for a single isotope (A,Z) </td></tr>
+<tr id="row_25_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1approx8_1_1_jacobian.html" target="_self">gridfire::approx8::Jacobian</a></td><td class="desc">Functor to calculate the <a class="el" href="structgridfire_1_1approx8_1_1_jacobian.html" title="Functor to calculate the Jacobian matrix for implicit solvers.">Jacobian</a> matrix for implicit solvers </td></tr>
+<tr id="row_26_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_net_in.html" target="_self">gridfire::NetIn</a></td><td class="desc"></td></tr>
+<tr id="row_27_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_net_out.html" target="_self">gridfire::NetOut</a></td><td class="desc"></td></tr>
+<tr id="row_28_" class="odd"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_28_" class="arrow" onclick="dynsection.toggleFolder('28_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_network.html" target="_self">gridfire::Network</a></td><td class="desc"></td></tr>
+<tr id="row_28_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html" target="_self">gridfire::approx8::Approx8Network</a></td><td class="desc">Class for the Approx8 nuclear reaction network </td></tr>
+<tr id="row_29_" class="odd"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_29_" class="arrow" onclick="dynsection.toggleFolder('29_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html" target="_self">gridfire::io::NetworkFileParser</a></td><td class="desc">An abstract base class for network file parsers </td></tr>
+<tr id="row_29_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_network_file_parser.html" target="_self">PyNetworkFileParser</a></td><td class="desc"></td></tr>
+<tr id="row_29_1_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html" target="_self">gridfire::io::MESANetworkFileParser</a></td><td class="desc">A parser for MESA-format network files </td></tr>
+<tr id="row_29_2_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html" target="_self">gridfire::io::SimpleReactionListFileParser</a></td><td class="desc">A parser for simple text files containing a list of reactions </td></tr>
+<tr id="row_30_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html" target="_self">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td><td class="desc">Abstract base class for network solver strategies </td></tr>
+<tr id="row_31_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_31_" class="arrow" onclick="dynsection.toggleFolder('31_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html" target="_self">gridfire::solver::NetworkSolverStrategy&lt; DynamicEngine &gt;</a></td><td class="desc"></td></tr>
+<tr id="row_31_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_dynamic_network_solver_strategy.html" target="_self">PyDynamicNetworkSolverStrategy</a></td><td class="desc"></td></tr>
+<tr id="row_31_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html" target="_self">gridfire::solver::CVODESolverStrategy</a></td><td class="desc">Stiff ODE integrator backed by SUNDIALS CVODE (BDF) for network + energy </td></tr>
+<tr id="row_32_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1approx8_1_1_o_d_e.html" target="_self">gridfire::approx8::ODE</a></td><td class="desc">Functor to calculate the derivatives for the <a class="el" href="structgridfire_1_1approx8_1_1_o_d_e.html" title="Functor to calculate the derivatives for the ODE solver.">ODE</a> solver </td></tr>
+<tr id="row_33_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_33_" class="arrow" onclick="dynsection.toggleFolder('33_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1partition_1_1_partition_function.html" target="_self">gridfire::partition::PartitionFunction</a></td><td class="desc">Abstract interface for evaluating nuclear partition functions </td></tr>
+<tr id="row_33_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_partition_function.html" target="_self">PyPartitionFunction</a></td><td class="desc"></td></tr>
+<tr id="row_33_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html" target="_self">gridfire::partition::CompositePartitionFunction</a></td><td class="desc">Combines multiple <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html" title="Abstract interface for evaluating nuclear partition functions.">PartitionFunction</a> instances into a single composite strategy </td></tr>
+<tr id="row_33_2_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html" target="_self">gridfire::partition::GroundStatePartitionFunction</a></td><td class="desc">Partition function implementation for nuclear ground states </td></tr>
+<tr id="row_33_3_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html" target="_self">gridfire::partition::RauscherThielemannPartitionFunction</a></td><td class="desc">Partition function using Rauscher-Thielemann tabulated normalized G-values </td></tr>
+<tr id="row_34_" class="odd"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_34_" class="arrow" onclick="dynsection.toggleFolder('34_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><b>fourdst::plugin::PluginBase</b></td><td class="desc"></td></tr>
+<tr id="row_34_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_solver_plugin_interface.html" target="_self">SolverPluginInterface</a></td><td class="desc"></td></tr>
+<tr id="row_35_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html" target="_self">gridfire::GraphEngine::PrecomputedReaction</a></td><td class="desc"></td></tr>
+<tr id="row_36_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_priming_report.html" target="_self">gridfire::PrimingReport</a></td><td class="desc">Captures the result of a network priming operation </td></tr>
+<tr id="row_37_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_q_s_e_cache_config.html" target="_self">gridfire::QSECacheConfig</a></td><td class="desc">Configuration struct for the QSE cache </td></tr>
+<tr id="row_38_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_q_s_e_cache_key.html" target="_self">gridfire::QSECacheKey</a></td><td class="desc">Key struct for the QSE abundance cache </td></tr>
+<tr id="row_39_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html" target="_self">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="desc">Struct representing a QSE group </td></tr>
+<tr id="row_40_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html" target="_self">gridfire::reaction::RateCoefficientSet</a></td><td class="desc">Holds the seven coefficients for the REACLIB rate equation </td></tr>
+<tr id="row_41_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html" target="_self">gridfire::rates::weak::RateDataRow</a></td><td class="desc">One row of the unified weak-rate data table for a specific isotope and state </td></tr>
+<tr id="row_42_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html" target="_self">gridfire::partition::record::RauscherThielemannPartitionDataRecord</a></td><td class="desc">Packed binary record of Rauscher-Thielemann partition function data for an isotope </td></tr>
+<tr id="row_43_" class="odd"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_43_" class="arrow" onclick="dynsection.toggleFolder('43_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_reaction.html" target="_self">gridfire::Reaction</a></td><td class="desc">Represents a single nuclear reaction from a specific data source </td></tr>
+<tr id="row_43_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html" target="_self">gridfire::rates::weak::WeakReaction</a></td><td class="desc">Concrete <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> representing a single weak process (beta±, e−/e+ capture) </td></tr>
+<tr id="row_43_1_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_43_1_" class="arrow" onclick="dynsection.toggleFolder('43_1_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html" target="_self">gridfire::reaction::ReaclibReaction</a></td><td class="desc"></td></tr>
+<tr id="row_43_1_0_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html" target="_self">gridfire::reaction::LogicalReaclibReaction</a></td><td class="desc">Represents a "logical" reaction that aggregates rates from multiple sources </td></tr>
+<tr id="row_44_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_44_" class="arrow" onclick="dynsection.toggleFolder('44_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" target="_self">gridfire::reaction::Reaction</a></td><td class="desc">Represents a single nuclear reaction from a specific data source </td></tr>
+<tr id="row_44_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html" target="_self">gridfire::rates::weak::WeakReaction</a></td><td class="desc">Concrete <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> representing a single weak process (beta±, e−/e+ capture) </td></tr>
+<tr id="row_44_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html" target="_self">gridfire::reaction::ReaclibReaction</a></td><td class="desc"></td></tr>
+<tr id="row_45_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html" target="_self">gridfire::AdaptiveEngineView::ReactionFlow</a></td><td class="desc">A struct to hold a reaction and its flow rate </td></tr>
+<tr id="row_46_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html" target="_self">gridfire::reaclib::ReactionRecord</a></td><td class="desc"></td></tr>
+<tr id="row_47_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html" target="_self">gridfire::reaction::ReactionSet</a></td><td class="desc"></td></tr>
+<tr id="row_48_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1_reaction_set.html" target="_self">gridfire::ReactionSet</a></td><td class="desc"></td></tr>
+<tr id="row_49_" class="odd"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_49_" class="arrow" onclick="dynsection.toggleFolder('49_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html" target="_self">gridfire::screening::ScreeningModel</a></td><td class="desc">An abstract base class for plasma screening models </td></tr>
+<tr id="row_49_0_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_screening.html" target="_self">PyScreening</a></td><td class="desc"></td></tr>
+<tr id="row_49_1_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html" target="_self">gridfire::screening::BareScreeningModel</a></td><td class="desc">A screening model that applies no screening effect </td></tr>
+<tr id="row_49_2_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html" target="_self">gridfire::screening::IntermediateScreeningModel</a></td><td class="desc"></td></tr>
+<tr id="row_49_3_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html" target="_self">gridfire::screening::WeakScreeningModel</a></td><td class="desc">Implements the weak screening model based on the Debye-Hückel approximation </td></tr>
+<tr id="row_50_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_50_" class="arrow" onclick="dynsection.toggleFolder('50_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1solver_1_1_solver_context_base.html" target="_self">gridfire::solver::SolverContextBase</a></td><td class="desc">Base class for solver callback contexts </td></tr>
+<tr id="row_50_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html" target="_self">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="desc">Immutable view of the current integration state passed to callbacks </td></tr>
+<tr id="row_51_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html" target="_self">gridfire::exceptions::StaleEngineTrigger::state</a></td><td class="desc"></td></tr>
+<tr id="row_52_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1_step_derivatives.html" target="_self">gridfire::StepDerivatives&lt; T &gt;</a></td><td class="desc">Structure holding derivatives and energy generation for a network step </td></tr>
+<tr id="row_53_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_53_" class="arrow" onclick="dynsection.toggleFolder('53_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html" target="_self">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="desc">Generic trigger interface for signaling events/conditions during integration </td></tr>
+<tr id="row_53_0_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_53_0_" class="arrow" onclick="dynsection.toggleFolder('53_0_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1_logical_trigger.html" target="_self">gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt;</a></td><td class="desc"></td></tr>
+<tr id="row_53_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html" target="_self">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="desc">Logical conjunction of two triggers with short-circuit evaluation </td></tr>
+<tr id="row_53_0_1_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html" target="_self">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="desc">Pass-through trigger that fires every Nth time its child trigger is true </td></tr>
+<tr id="row_53_0_2_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html" target="_self">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="desc">Logical negation of a trigger </td></tr>
+<tr id="row_53_0_3_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html" target="_self">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="desc">Logical disjunction of two triggers with short-circuit evaluation </td></tr>
+<tr id="row_54_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_54_" class="arrow" onclick="dynsection.toggleFolder('54_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html" target="_self">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a></td><td class="desc"></td></tr>
+<tr id="row_54_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html" target="_self">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="desc">Triggers when any off-diagonal Jacobian entry magnitude exceeds a threshold </td></tr>
+<tr id="row_54_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html" target="_self">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="desc">Triggers when the current simulation time advances by at least a fixed interval </td></tr>
+<tr id="row_54_2_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html" target="_self">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="desc">Triggers when the timestep deviates from its recent average beyond a threshold </td></tr>
+<tr id="row_55_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html" target="_self">gridfire::trigger::TriggerResult</a></td><td class="desc"></td></tr>
+<tr id="row_56_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html" target="_self">gridfire::rates::weak::WeakRateDerivatives</a></td><td class="desc">Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye), mu_e) </td></tr>
+<tr id="row_57_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html" target="_self">gridfire::rates::weak::WeakRateInterpolator</a></td><td class="desc">3D table interpolator for tabulated weak reaction data by isotope </td></tr>
+<tr id="row_58_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html" target="_self">gridfire::rates::weak::WeakRatePayload</a></td><td class="desc">Interpolated weak-rate payload at a single state </td></tr>
+<tr id="row_59_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html" target="_self">gridfire::rates::weak::WeakReactionEntry</a></td><td class="desc">A single weak-reaction data point (type, state, and log values) </td></tr>
+<tr id="row_60_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html" target="_self">gridfire::rates::weak::WeakReactionMap</a></td><td class="desc">Index of available weak reactions keyed by species </td></tr>
 </table>
 </div><!-- directory -->
 </div><!-- contents -->
diff --git a/docs/html/hierarchy.js b/docs/html/hierarchy.js
index 880f45b6..46263b0e 100644
--- a/docs/html/hierarchy.js
+++ b/docs/html/hierarchy.js
@@ -2,11 +2,19 @@ var hierarchy =
 [
     [ "gridfire::approx8::Approx8Net", "structgridfire_1_1approx8_1_1_approx8_net.html", null ],
     [ "CppAD::atomic_base", null, [
-      [ "gridfire::GraphEngine::AtomicReverseRate", "classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html", null ]
+      [ "gridfire::GraphEngine::AtomicReverseRate", "classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html", null ],
+      [ "gridfire::rates::weak::WeakReaction::AtomicWeakRate", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html", null ]
     ] ],
+    [ "gridfire::rates::weak::BoundsErrorInfo", "structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html", null ],
     [ "gridfire::MultiscalePartitioningEngineView::CacheStats", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html", null ],
+    [ "gridfire::utils::ColumnBase", "classgridfire_1_1utils_1_1_column_base.html", [
+      [ "gridfire::utils::Column< T >", "classgridfire_1_1utils_1_1_column.html", null ]
+    ] ],
     [ "gridfire::GraphEngine::constants", "structgridfire_1_1_graph_engine_1_1constants.html", null ],
+    [ "gridfire::rates::weak::WeakReaction::constants", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html", null ],
+    [ "gridfire::solver::CVODESolverStrategy::CVODEUserData", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html", null ],
     [ "gridfire::MultiscalePartitioningEngineView::EigenFunctor", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html", null ],
+    [ "gridfire::EnergyDerivatives", "structgridfire_1_1_energy_derivatives.html", null ],
     [ "gridfire::Engine", "classgridfire_1_1_engine.html", [
       [ "PyEngine", "class_py_engine.html", null ],
       [ "gridfire::DynamicEngine", "classgridfire_1_1_dynamic_engine.html", [
@@ -46,14 +54,14 @@ var hierarchy =
       ] ]
     ] ],
     [ "std::hash< gridfire::QSECacheKey >", "structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html", null ],
-    [ "std::hash< gridfire::reaction::LogicalReactionSet >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html", null ],
     [ "std::hash< gridfire::reaction::Reaction >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html", null ],
     [ "std::hash< gridfire::reaction::ReactionSet >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html", null ],
     [ "gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope", "structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html", null ],
+    [ "gridfire::rates::weak::InterpolationError", "structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html", null ],
     [ "gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints", "structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html", null ],
     [ "gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData", "structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html", null ],
+    [ "gridfire::rates::weak::IsotopeGrid", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html", null ],
     [ "gridfire::approx8::Jacobian", "structgridfire_1_1approx8_1_1_jacobian.html", null ],
-    [ "gridfire::solver::DirectNetworkSolver::JacobianFunctor", "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html", null ],
     [ "gridfire::NetIn", "structgridfire_1_1_net_in.html", null ],
     [ "gridfire::NetOut", "structgridfire_1_1_net_out.html", null ],
     [ "gridfire::Network", "classgridfire_1_1_network.html", [
@@ -67,7 +75,7 @@ var hierarchy =
     [ "gridfire::solver::NetworkSolverStrategy< EngineT >", "classgridfire_1_1solver_1_1_network_solver_strategy.html", null ],
     [ "gridfire::solver::NetworkSolverStrategy< DynamicEngine >", "classgridfire_1_1solver_1_1_network_solver_strategy.html", [
       [ "PyDynamicNetworkSolverStrategy", "class_py_dynamic_network_solver_strategy.html", null ],
-      [ "gridfire::solver::DirectNetworkSolver", "classgridfire_1_1solver_1_1_direct_network_solver.html", null ]
+      [ "gridfire::solver::CVODESolverStrategy", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html", null ]
     ] ],
     [ "gridfire::approx8::ODE", "structgridfire_1_1approx8_1_1_o_d_e.html", null ],
     [ "gridfire::partition::PartitionFunction", "classgridfire_1_1partition_1_1_partition_function.html", [
@@ -76,31 +84,59 @@ var hierarchy =
       [ "gridfire::partition::GroundStatePartitionFunction", "classgridfire_1_1partition_1_1_ground_state_partition_function.html", null ],
       [ "gridfire::partition::RauscherThielemannPartitionFunction", "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html", null ]
     ] ],
+    [ "fourdst::plugin::PluginBase", null, [
+      [ "SolverPluginInterface", "class_solver_plugin_interface.html", null ]
+    ] ],
     [ "gridfire::GraphEngine::PrecomputedReaction", "structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html", null ],
     [ "gridfire::PrimingReport", "structgridfire_1_1_priming_report.html", null ],
     [ "gridfire::QSECacheConfig", "structgridfire_1_1_q_s_e_cache_config.html", null ],
     [ "gridfire::QSECacheKey", "structgridfire_1_1_q_s_e_cache_key.html", null ],
     [ "gridfire::MultiscalePartitioningEngineView::QSEGroup", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html", null ],
     [ "gridfire::reaction::RateCoefficientSet", "structgridfire_1_1reaction_1_1_rate_coefficient_set.html", null ],
+    [ "gridfire::rates::weak::RateDataRow", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html", null ],
     [ "gridfire::partition::record::RauscherThielemannPartitionDataRecord", "structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html", null ],
     [ "gridfire::Reaction", "classgridfire_1_1_reaction.html", [
-      [ "gridfire::reaction::LogicalReaction", "classgridfire_1_1reaction_1_1_logical_reaction.html", null ]
+      [ "gridfire::rates::weak::WeakReaction", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html", null ],
+      [ "gridfire::reaction::ReaclibReaction", "classgridfire_1_1reaction_1_1_reaclib_reaction.html", [
+        [ "gridfire::reaction::LogicalReaclibReaction", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html", null ]
+      ] ]
     ] ],
     [ "gridfire::reaction::Reaction", "classgridfire_1_1reaction_1_1_reaction.html", [
-      [ "gridfire::reaction::LogicalReaction", "classgridfire_1_1reaction_1_1_logical_reaction.html", null ]
+      [ "gridfire::rates::weak::WeakReaction", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html", null ],
+      [ "gridfire::reaction::ReaclibReaction", "classgridfire_1_1reaction_1_1_reaclib_reaction.html", null ]
     ] ],
     [ "gridfire::AdaptiveEngineView::ReactionFlow", "structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html", null ],
     [ "gridfire::reaclib::ReactionRecord", "structgridfire_1_1reaclib_1_1_reaction_record.html", null ],
-    [ "gridfire::solver::DirectNetworkSolver::RHSManager", "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html", null ],
+    [ "gridfire::reaction::ReactionSet", "classgridfire_1_1reaction_1_1_reaction_set.html", null ],
+    [ "gridfire::ReactionSet", "classgridfire_1_1_reaction_set.html", null ],
     [ "gridfire::screening::ScreeningModel", "classgridfire_1_1screening_1_1_screening_model.html", [
       [ "PyScreening", "class_py_screening.html", null ],
       [ "gridfire::screening::BareScreeningModel", "classgridfire_1_1screening_1_1_bare_screening_model.html", null ],
+      [ "gridfire::screening::IntermediateScreeningModel", "classgridfire_1_1screening_1_1_intermediate_screening_model.html", null ],
       [ "gridfire::screening::WeakScreeningModel", "classgridfire_1_1screening_1_1_weak_screening_model.html", null ]
     ] ],
     [ "gridfire::solver::SolverContextBase", "structgridfire_1_1solver_1_1_solver_context_base.html", [
-      [ "gridfire::solver::DirectNetworkSolver::TimestepContext", "structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html", null ]
+      [ "gridfire::solver::CVODESolverStrategy::TimestepContext", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html", null ]
     ] ],
     [ "gridfire::exceptions::StaleEngineTrigger::state", "structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html", null ],
     [ "gridfire::StepDerivatives< T >", "structgridfire_1_1_step_derivatives.html", null ],
-    [ "gridfire::reaction::TemplatedReactionSet< ReactionT >", "classgridfire_1_1reaction_1_1_templated_reaction_set.html", null ]
+    [ "gridfire::trigger::Trigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_trigger.html", [
+      [ "gridfire::trigger::LogicalTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_logical_trigger.html", [
+        [ "gridfire::trigger::AndTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_and_trigger.html", null ],
+        [ "gridfire::trigger::EveryNthTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_every_nth_trigger.html", null ],
+        [ "gridfire::trigger::NotTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_not_trigger.html", null ],
+        [ "gridfire::trigger::OrTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_or_trigger.html", null ]
+      ] ]
+    ] ],
+    [ "gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >", "classgridfire_1_1trigger_1_1_trigger.html", [
+      [ "gridfire::trigger::solver::CVODE::OffDiagonalTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html", null ],
+      [ "gridfire::trigger::solver::CVODE::SimulationTimeTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html", null ],
+      [ "gridfire::trigger::solver::CVODE::TimestepCollapseTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html", null ]
+    ] ],
+    [ "gridfire::trigger::TriggerResult", "structgridfire_1_1trigger_1_1_trigger_result.html", null ],
+    [ "gridfire::rates::weak::WeakRateDerivatives", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html", null ],
+    [ "gridfire::rates::weak::WeakRateInterpolator", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html", null ],
+    [ "gridfire::rates::weak::WeakRatePayload", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html", null ],
+    [ "gridfire::rates::weak::WeakReactionEntry", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html", null ],
+    [ "gridfire::rates::weak::WeakReactionMap", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/index.html b/docs/html/index.html
index 87ad08cc..444ade39 100644
--- a/docs/html/index.html
+++ b/docs/html/index.html
@@ -444,7 +444,7 @@ GraphEngine Initialization</h3>
 <div class="line">    fourdst::composition::Composition comp;</div>
 <div class="line">    <a class="code hl_class" href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a> engine(comp);</div>
 <div class="line">}</div>
-<div class="ttc" id="aclassgridfire_1_1_graph_engine_html"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></div><div class="ttdoc">A reaction network engine that uses a graph-based representation.</div><div class="ttdef"><b>Definition</b> engine_graph.h:100</div></div>
+<div class="ttc" id="aclassgridfire_1_1_graph_engine_html"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html">gridfire::GraphEngine</a></div><div class="ttdoc">A reaction network engine that uses a graph-based representation.</div><div class="ttdef"><b>Definition</b> engine_graph.h:97</div></div>
 <div class="ttc" id="aengine__graph_8h_html"><div class="ttname"><a href="engine__graph_8h.html">engine_graph.h</a></div></div>
 </div><!-- fragment --><h3><a class="anchor" id="autotoc_md48"></a>
 Adaptive Network View</h3>
@@ -457,7 +457,7 @@ Adaptive Network View</h3>
 <div class="line">    <span class="comment">// Dynamically adapt network topology based on reaction flows</span></div>
 <div class="line">    <a class="code hl_class" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a> adaptiveView(baseEngine);</div>
 <div class="line">}</div>
-<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></div><div class="ttdoc">An engine view that dynamically adapts the reaction network based on runtime conditions.</div><div class="ttdef"><b>Definition</b> engine_adaptive.h:50</div></div>
+<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></div><div class="ttdoc">An engine view that dynamically adapts the reaction network based on runtime conditions.</div><div class="ttdef"><b>Definition</b> engine_adaptive.h:49</div></div>
 <div class="ttc" id="aengine__adaptive_8h_html"><div class="ttname"><a href="engine__adaptive_8h.html">engine_adaptive.h</a></div></div>
 </div><!-- fragment --><h3><a class="anchor" id="autotoc_md49"></a>
 Composition Initialization</h3>
@@ -524,7 +524,7 @@ Common Workflow Example</h3>
 <div class="line">    NetOut output = solver.evaluate(input);</div>
 <div class="line">    std::cout &lt;&lt; <span class="stringliteral">&quot;Final results are: &quot;</span> &lt;&lt; output &lt;&lt; std::endl;</div>
 <div class="line">}</div>
-<div class="ttc" id="aclassgridfire_1_1_multiscale_partitioning_engine_view_html"><div class="ttname"><a href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></div><div class="ttdoc">An engine view that partitions the reaction network into multiple groups based on timescales.</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:182</div></div>
+<div class="ttc" id="aclassgridfire_1_1_multiscale_partitioning_engine_view_html"><div class="ttname"><a href="classgridfire_1_1_multiscale_partitioning_engine_view.html">gridfire::MultiscalePartitioningEngineView</a></div><div class="ttdoc">An engine view that partitions the reaction network into multiple groups based on timescales.</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:180</div></div>
 <div class="ttc" id="aengine_8h_html"><div class="ttname"><a href="engine_8h.html">engine.h</a></div><div class="ttdoc">Core header for the GridFire reaction network engine module.</div></div>
 <div class="ttc" id="asolver_8h_html"><div class="ttname"><a href="solver_8h.html">solver.h</a></div></div>
 </div><!-- fragment --><h4><a class="anchor" id="autotoc_md51"></a>
@@ -546,11 +546,11 @@ Callback Example</h3>
 <div class="line"> </div>
 <div class="line"><span class="preprocessor">#include &lt;iostream&gt;</span></div>
 <div class="line"> </div>
-<div class="line"><span class="keywordtype">void</span> callback(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html">gridfire::solver::DirectNetworkSolver::TimestepContext</a>&amp; context) {</div>
-<div class="line">    <span class="keywordtype">int</span> H1Index = context.<a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a53985d354dcaeda96dc39828c6c9d9d1">engine</a>.<a class="code hl_function" href="classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9">getSpeciesIndex</a>(fourdst::atomic::H_1);</div>
-<div class="line">    <span class="keywordtype">int</span> He4Index = context.<a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a53985d354dcaeda96dc39828c6c9d9d1">engine</a>.<a class="code hl_function" href="classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9">getSpeciesIndex</a>(fourdst::atomic::He_4);</div>
+<div class="line"><span class="keywordtype">void</span> callback(<span class="keyword">const</span> gridfire::solver::DirectNetworkSolver::TimestepContext&amp; context) {</div>
+<div class="line">    <span class="keywordtype">int</span> H1Index = context.engine.getSpeciesIndex(fourdst::atomic::H_1);</div>
+<div class="line">    <span class="keywordtype">int</span> He4Index = context.engine.getSpeciesIndex(fourdst::atomic::He_4);</div>
 <div class="line"> </div>
-<div class="line">    std::cout &lt;&lt; context.<a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ad49305586fdc676f96161e91c6b863dd">t</a> &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; context.<a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adab4b53a94b935f89f799bd5a67847a2">state</a>(H1Index) &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; context.<a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adab4b53a94b935f89f799bd5a67847a2">state</a>(He4Index) &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div>
+<div class="line">    std::cout &lt;&lt; context.t &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; context.state(H1Index) &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; context.state(He4Index) &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div>
 <div class="line">}</div>
 <div class="line"> </div>
 <div class="line"><span class="keywordtype">int</span> main(){</div>
@@ -591,11 +591,6 @@ Callback Example</h3>
 <div class="line">    NetOut output = solver.evaluate(input);</div>
 <div class="line">    std::cout &lt;&lt; <span class="stringliteral">&quot;Final results are: &quot;</span> &lt;&lt; output &lt;&lt; std::endl;</div>
 <div class="line">}</div>
-<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html_ad3d56a8b9161b9cc7f4da51f6bf7e8c9"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9">gridfire::DynamicEngine::getSpeciesIndex</a></div><div class="ttdeci">virtual int getSpeciesIndex(const fourdst::atomic::Species &amp;species) const =0</div><div class="ttdoc">Get the index of a species in the network.</div></div>
-<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context_html"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html">gridfire::solver::DirectNetworkSolver::TimestepContext</a></div><div class="ttdoc">Context for the timestep callback function for the DirectNetworkSolver.</div><div class="ttdef"><b>Definition</b> solver.h:155</div></div>
-<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context_html_a53985d354dcaeda96dc39828c6c9d9d1"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a53985d354dcaeda96dc39828c6c9d9d1">gridfire::solver::DirectNetworkSolver::TimestepContext::engine</a></div><div class="ttdeci">const DynamicEngine &amp; engine</div><div class="ttdoc">Reference to the dynamic engine.</div><div class="ttdef"><b>Definition</b> solver.h:166</div></div>
-<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context_html_ad49305586fdc676f96161e91c6b863dd"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ad49305586fdc676f96161e91c6b863dd">gridfire::solver::DirectNetworkSolver::TimestepContext::t</a></div><div class="ttdeci">const double t</div><div class="ttdoc">Current time.</div><div class="ttdef"><b>Definition</b> solver.h:156</div></div>
-<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context_html_adab4b53a94b935f89f799bd5a67847a2"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adab4b53a94b935f89f799bd5a67847a2">gridfire::solver::DirectNetworkSolver::TimestepContext::state</a></div><div class="ttdeci">const boost::numeric::ublas::vector&lt; double &gt; &amp; state</div><div class="ttdoc">Current state of the system.</div><div class="ttdef"><b>Definition</b> solver.h:157</div></div>
 </div><!-- fragment --><p>&gt;<b>Note:</b> A fully detailed list of all available information in the TimestepContext struct is available in the API documentation.</p>
 <p>&gt;<b>Note:</b> The order of species in the boost state vector (<code>ctx.state</code>) is <b>not guaranteed</b> to be any particular order run over run. Therefore, in order to reliably extract </p><blockquote class="doxtable">
 <p>values from it, you <b>must</b> use the <code>getSpeciesIndex</code> method of the engine to get the index of the species you are interested in (these will always be in the same order). </p>
@@ -648,7 +643,7 @@ Common Workflow Example</h3>
 <div class="line">results = solver.evaluate(netIn)</div>
 <div class="line"> </div>
 <div class="line">print(f<span class="stringliteral">&quot;Final H-1 mass fraction {results.composition.getMassFraction(&quot;</span>H-1<span class="stringliteral">&quot;)}&quot;</span>)</div>
-<div class="ttc" id="anamespacegridfire_1_1solver_html"><div class="ttname"><a href="namespacegridfire_1_1solver.html">gridfire::solver</a></div><div class="ttdef"><b>Definition</b> solver.h:18</div></div>
+<div class="ttc" id="anamespacegridfire_1_1solver_html"><div class="ttname"><a href="namespacegridfire_1_1solver.html">gridfire::solver</a></div><div class="ttdef"><b>Definition</b> solver.h:12</div></div>
 </div><!-- fragment --><h3><a class="anchor" id="autotoc_md56"></a>
 Python callbacks</h3>
 <p>Just like in C++, python users can register callbacks to be called at the end of each successful timestep. Note that these may slow down code significantly as the interpreter needs to jump up into the slower python code therefore these should likely only be used for debugging purposes.</p>
diff --git a/docs/html/io_2bindings_8cpp.html b/docs/html/io_2bindings_8cpp.html
index 8c80c725..25e05e17 100644
--- a/docs/html/io_2bindings_8cpp.html
+++ b/docs/html/io_2bindings_8cpp.html
@@ -105,9 +105,7 @@ $(function(){initNavTree('io_2bindings_8cpp.html',''); initResizable(true); });
 </div><!--header-->
 <div class="contents">
 <div class="textblock"><code>#include &lt;pybind11/pybind11.h&gt;</code><br />
-<code>#include &lt;pybind11/stl.h&gt;</code><br />
 <code>#include &lt;pybind11/stl_bind.h&gt;</code><br />
-<code>#include &lt;string_view&gt;</code><br />
 <code>#include &lt;vector&gt;</code><br />
 <code>#include &quot;<a class="el" href="io_2bindings_8h.html">bindings.h</a>&quot;</code><br />
 <code>#include &quot;<a class="el" href="io_8h.html">gridfire/io/io.h</a>&quot;</code><br />
@@ -115,21 +113,21 @@ $(function(){initNavTree('io_2bindings_8cpp.html',''); initResizable(true); });
 </div><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:a7f552627cbe94906e0ee98b121e77862" id="r_a7f552627cbe94906e0ee98b121e77862"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7f552627cbe94906e0ee98b121e77862">register_io_bindings</a> (py::module &amp;m)</td></tr>
-<tr class="separator:a7f552627cbe94906e0ee98b121e77862"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3f76dbefdeeb3b49828ce36586899695" id="r_a3f76dbefdeeb3b49828ce36586899695"><td class="memItemLeft" align="right" valign="top">auto&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3f76dbefdeeb3b49828ce36586899695">register_io_bindings</a> (const py::module &amp;m) -&gt; void</td></tr>
+<tr class="separator:a3f76dbefdeeb3b49828ce36586899695"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Function Documentation</h2>
-<a id="a7f552627cbe94906e0ee98b121e77862" name="a7f552627cbe94906e0ee98b121e77862"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7f552627cbe94906e0ee98b121e77862">&#9670;&#160;</a></span>register_io_bindings()</h2>
+<a id="a3f76dbefdeeb3b49828ce36586899695" name="a3f76dbefdeeb3b49828ce36586899695"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3f76dbefdeeb3b49828ce36586899695">&#9670;&#160;</a></span>register_io_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
       <table class="memname">
         <tr>
-          <td class="memname">void register_io_bindings </td>
+          <td class="memname">auto register_io_bindings </td>
           <td>(</td>
-          <td class="paramtype">py::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
-          <td></td>
+          <td class="paramtype">const py::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td> -&gt; void </td>
         </tr>
       </table>
 </div><div class="memdoc">
diff --git a/docs/html/io_2bindings_8cpp.js b/docs/html/io_2bindings_8cpp.js
index dbf5680c..a47be276 100644
--- a/docs/html/io_2bindings_8cpp.js
+++ b/docs/html/io_2bindings_8cpp.js
@@ -1,4 +1,4 @@
 var io_2bindings_8cpp =
 [
-    [ "register_io_bindings", "io_2bindings_8cpp.html#a7f552627cbe94906e0ee98b121e77862", null ]
+    [ "register_io_bindings", "io_2bindings_8cpp.html#a3f76dbefdeeb3b49828ce36586899695", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/io_2bindings_8h.html b/docs/html/io_2bindings_8h.html
index 0c5ee4c1..1ca8c293 100644
--- a/docs/html/io_2bindings_8h.html
+++ b/docs/html/io_2bindings_8h.html
@@ -108,12 +108,12 @@ $(function(){initNavTree('io_2bindings_8h.html',''); initResizable(true); });
 </div><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:a1d91b8298302b9f5401bf06c22651df4" id="r_a1d91b8298302b9f5401bf06c22651df4"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1d91b8298302b9f5401bf06c22651df4">register_io_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:a1d91b8298302b9f5401bf06c22651df4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aba28f9bd688764ab1905af9d40d4b428" id="r_aba28f9bd688764ab1905af9d40d4b428"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aba28f9bd688764ab1905af9d40d4b428">register_io_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:aba28f9bd688764ab1905af9d40d4b428"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Function Documentation</h2>
-<a id="a1d91b8298302b9f5401bf06c22651df4" name="a1d91b8298302b9f5401bf06c22651df4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1d91b8298302b9f5401bf06c22651df4">&#9670;&#160;</a></span>register_io_bindings()</h2>
+<a id="aba28f9bd688764ab1905af9d40d4b428" name="aba28f9bd688764ab1905af9d40d4b428"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aba28f9bd688764ab1905af9d40d4b428">&#9670;&#160;</a></span>register_io_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -121,7 +121,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_io_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
diff --git a/docs/html/io_2bindings_8h.js b/docs/html/io_2bindings_8h.js
index 48def88e..a6ebc974 100644
--- a/docs/html/io_2bindings_8h.js
+++ b/docs/html/io_2bindings_8h.js
@@ -1,4 +1,4 @@
 var io_2bindings_8h =
 [
-    [ "register_io_bindings", "io_2bindings_8h.html#a1d91b8298302b9f5401bf06c22651df4", null ]
+    [ "register_io_bindings", "io_2bindings_8h.html#aba28f9bd688764ab1905af9d40d4b428", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/logging_8cpp.html b/docs/html/logging_8cpp.html
index e30066d9..964f1b1f 100644
--- a/docs/html/logging_8cpp.html
+++ b/docs/html/logging_8cpp.html
@@ -110,7 +110,6 @@ $(function(){initNavTree('logging_8cpp.html',''); initResizable(true); });
 <code>#include &lt;ranges&gt;</code><br />
 <code>#include &lt;string_view&gt;</code><br />
 <code>#include &lt;string&gt;</code><br />
-<code>#include &lt;iostream&gt;</code><br />
 <code>#include &lt;vector&gt;</code><br />
 </div></div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/logging_8h.html b/docs/html/logging_8h.html
index 97c6f351..36586924 100644
--- a/docs/html/logging_8h.html
+++ b/docs/html/logging_8h.html
@@ -118,9 +118,9 @@ Namespaces</h2></td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:af56693a70d9e2b40c8ae2c3bcd4b26c8" id="r_af56693a70d9e2b40c8ae2c3bcd4b26c8"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1utils.html#af56693a70d9e2b40c8ae2c3bcd4b26c8">gridfire::utils::formatNuclearTimescaleLogString</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho)</td></tr>
-<tr class="memdesc:af56693a70d9e2b40c8ae2c3bcd4b26c8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Formats a map of nuclear species timescales into a human-readable string.  <br /></td></tr>
-<tr class="separator:af56693a70d9e2b40c8ae2c3bcd4b26c8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a05fda32d3fc4ab10060b8c4c251c2f3d" id="r_a05fda32d3fc4ab10060b8c4c251c2f3d"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1utils.html#a05fda32d3fc4ab10060b8c4c251c2f3d">gridfire::utils::formatNuclearTimescaleLogString</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const fourdst::composition::Composition &amp;composition, double T9, double rho)</td></tr>
+<tr class="memdesc:a05fda32d3fc4ab10060b8c4c251c2f3d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Formats a map of nuclear species timescales into a human-readable string.  <br /></td></tr>
+<tr class="separator:a05fda32d3fc4ab10060b8c4c251c2f3d"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/logging_8h.js b/docs/html/logging_8h.js
index c16182d6..60b29f37 100644
--- a/docs/html/logging_8h.js
+++ b/docs/html/logging_8h.js
@@ -1,4 +1,4 @@
 var logging_8h =
 [
-    [ "gridfire::utils::formatNuclearTimescaleLogString", "namespacegridfire_1_1utils.html#af56693a70d9e2b40c8ae2c3bcd4b26c8", null ]
+    [ "gridfire::utils::formatNuclearTimescaleLogString", "namespacegridfire_1_1utils.html#a05fda32d3fc4ab10060b8c4c251c2f3d", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/md_docs_2static_2usage.html b/docs/html/md_docs_2static_2usage.html
index 47eb8f0f..28c94c1d 100644
--- a/docs/html/md_docs_2static_2usage.html
+++ b/docs/html/md_docs_2static_2usage.html
@@ -207,7 +207,7 @@ $(function(){initNavTree('md_docs_2static_2usage.html',''); initResizable(true);
 <div class="line"> </div>
 <div class="line"><span class="comment"># 8. Final result:</span></div>
 <div class="line">print(f<span class="stringliteral">&quot;Final H-1 fraction: {netOut.composition.getMassFraction(&#39;H-1&#39;)}&quot;</span>)</div>
-<div class="ttc" id="anamespacegridfire_1_1solver_html"><div class="ttname"><a href="namespacegridfire_1_1solver.html">gridfire::solver</a></div><div class="ttdef"><b>Definition</b> solver.h:18</div></div>
+<div class="ttc" id="anamespacegridfire_1_1solver_html"><div class="ttname"><a href="namespacegridfire_1_1solver.html">gridfire::solver</a></div><div class="ttdef"><b>Definition</b> solver.h:12</div></div>
 </div><!-- fragment --><p><b>Why these choices?</b> <br  />
 </p><ul>
 <li><b>buildDepth=2</b>: In Emily’s preliminary tests, depth=2 captures key reaction loops without the overhead of a full network. <br  />
diff --git a/docs/html/menudata.js b/docs/html/menudata.js
index 2b8393a0..f5dd9e24 100644
--- a/docs/html/menudata.js
+++ b/docs/html/menudata.js
@@ -38,7 +38,6 @@ var menudata={children:[
 {text:"g",url:"namespacemembers.html#index_g"},
 {text:"h",url:"namespacemembers.html#index_h"},
 {text:"i",url:"namespacemembers.html#index_i"},
-{text:"l",url:"namespacemembers.html#index_l"},
 {text:"m",url:"namespacemembers.html#index_m"},
 {text:"n",url:"namespacemembers.html#index_n"},
 {text:"o",url:"namespacemembers.html#index_o"},
@@ -47,7 +46,8 @@ var menudata={children:[
 {text:"s",url:"namespacemembers.html#index_s"},
 {text:"t",url:"namespacemembers.html#index_t"},
 {text:"u",url:"namespacemembers.html#index_u"},
-{text:"v",url:"namespacemembers.html#index_v"}]},
+{text:"v",url:"namespacemembers.html#index_v"},
+{text:"w",url:"namespacemembers.html#index_w"}]},
 {text:"Functions",url:"namespacemembers_func.html",children:[
 {text:"b",url:"namespacemembers_func.html#index_b"},
 {text:"c",url:"namespacemembers_func.html#index_c"},
@@ -56,12 +56,14 @@ var menudata={children:[
 {text:"g",url:"namespacemembers_func.html#index_g"},
 {text:"h",url:"namespacemembers_func.html#index_h"},
 {text:"i",url:"namespacemembers_func.html#index_i"},
+{text:"m",url:"namespacemembers_func.html#index_m"},
 {text:"n",url:"namespacemembers_func.html#index_n"},
 {text:"o",url:"namespacemembers_func.html#index_o"},
 {text:"p",url:"namespacemembers_func.html#index_p"},
 {text:"r",url:"namespacemembers_func.html#index_r"},
 {text:"s",url:"namespacemembers_func.html#index_s"},
-{text:"t",url:"namespacemembers_func.html#index_t"}]},
+{text:"t",url:"namespacemembers_func.html#index_t"},
+{text:"w",url:"namespacemembers_func.html#index_w"}]},
 {text:"Variables",url:"namespacemembers_vars.html"},
 {text:"Typedefs",url:"namespacemembers_type.html"},
 {text:"Enumerations",url:"namespacemembers_enum.html"},
@@ -109,7 +111,6 @@ var menudata={children:[
 {text:"g",url:"functions_func_g.html#index_g"},
 {text:"h",url:"functions_func_h.html#index_h"},
 {text:"i",url:"functions_func_i.html#index_i"},
-{text:"j",url:"functions_func_j.html#index_j"},
 {text:"l",url:"functions_func_l.html#index_l"},
 {text:"m",url:"functions_func_m.html#index_m"},
 {text:"n",url:"functions_func_n.html#index_n"},
@@ -143,6 +144,7 @@ var menudata={children:[
 {text:"s",url:"functions_vars_s.html#index_s"},
 {text:"t",url:"functions_vars_t.html#index_t"},
 {text:"u",url:"functions_vars_u.html#index_u"},
+{text:"v",url:"functions_vars_v.html#index_v"},
 {text:"y",url:"functions_vars_y.html#index_y"},
 {text:"z",url:"functions_vars_z.html#index_z"}]},
 {text:"Typedefs",url:"functions_type.html"},
@@ -155,6 +157,7 @@ var menudata={children:[
 {text:"All",url:"globals.html",children:[
 {text:"a",url:"globals.html#index_a"},
 {text:"c",url:"globals.html#index_c"},
+{text:"g",url:"globals.html#index_g"},
 {text:"p",url:"globals.html#index_p"},
 {text:"r",url:"globals.html#index_r"},
 {text:"t",url:"globals.html#index_t"}]},
@@ -165,5 +168,6 @@ var menudata={children:[
 {text:"r",url:"globals_func.html#index_r"},
 {text:"t",url:"globals_func.html#index_t"}]},
 {text:"Variables",url:"globals_vars.html"},
-{text:"Typedefs",url:"globals_type.html"}]}]},
+{text:"Typedefs",url:"globals_type.html"},
+{text:"Macros",url:"globals_defs.html"}]}]},
 {text:"Examples",url:"examples.html"}]}
diff --git a/docs/html/namespacegridfire.html b/docs/html/namespacegridfire.html
index 3e3f1da1..4d44ff3f 100644
--- a/docs/html/namespacegridfire.html
+++ b/docs/html/namespacegridfire.html
@@ -115,6 +115,8 @@ $(function(){initNavTree('namespacegridfire.html',''); initResizable(true); });
 Namespaces</h2></td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1approx8.html">approx8</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1diagnostics.html">diagnostics</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1exceptions.html">exceptions</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1expectations.html">expectations</a></td></tr>
@@ -123,6 +125,8 @@ Namespaces</h2></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1partition.html">partition</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates.html">rates</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaclib.html">reaclib</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaction.html">reaction</a></td></tr>
@@ -131,6 +135,8 @@ Namespaces</h2></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1solver.html">solver</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1utils.html">utils</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
@@ -144,6 +150,8 @@ Classes</h2></td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a></td></tr>
 <tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Abstract class for engines supporting Jacobian and stoichiometry operations.  <a href="classgridfire_1_1_dynamic_engine.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_engine.html">Engine</a></td></tr>
 <tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Abstract base class for a reaction network engine.  <a href="classgridfire_1_1_engine.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -179,6 +187,8 @@ Classes</h2></td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_reaction.html">Reaction</a></td></tr>
 <tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Represents a single nuclear reaction from a specific data source.  <a href="classgridfire_1_1_reaction.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_reaction_set.html">ReactionSet</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a></td></tr>
 <tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structure holding derivatives and energy generation for a network step.  <a href="structgridfire_1_1_step_derivatives.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -202,12 +212,6 @@ Typedefs</h2></td></tr>
 <tr class="memitem:a3b1f70dc7ff5b501809330a97079e4f6" id="r_a3b1f70dc7ff5b501809330a97079e4f6"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a> = std::variant&lt;<a class="el" href="#a0210bd2e07538932135a56b62b8ddb57">NetworkBuildDepth</a>, int&gt;</td></tr>
 <tr class="memdesc:a3b1f70dc7ff5b501809330a97079e4f6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Variant specifying either a predefined <a class="el" href="#a0210bd2e07538932135a56b62b8ddb57" title="Specifies supported depths for building the reaction network.">NetworkBuildDepth</a> or a custom integer depth.  <br /></td></tr>
 <tr class="separator:a3b1f70dc7ff5b501809330a97079e4f6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa86f08712565f278adacc7cd2361eb31" id="r_aa86f08712565f278adacc7cd2361eb31"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa86f08712565f278adacc7cd2361eb31">LogicalReactionSet</a></td></tr>
-<tr class="memdesc:aa86f08712565f278adacc7cd2361eb31"><td class="mdescLeft">&#160;</td><td class="mdescRight">A set of logical reactions.  <br /></td></tr>
-<tr class="separator:aa86f08712565f278adacc7cd2361eb31"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad838ce3fb6cc02c3fd90b924a0dd91b1" id="r_ad838ce3fb6cc02c3fd90b924a0dd91b1"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad838ce3fb6cc02c3fd90b924a0dd91b1">ReactionSet</a></td></tr>
-<tr class="memdesc:ad838ce3fb6cc02c3fd90b924a0dd91b1"><td class="mdescLeft">&#160;</td><td class="mdescRight">A set of reactions, typically from a single source like REACLIB.  <br /></td></tr>
-<tr class="separator:ad838ce3fb6cc02c3fd90b924a0dd91b1"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="enum-members" name="enum-members"></a>
 Enumerations</h2></td></tr>
@@ -244,22 +248,26 @@ Enumerations</h2></td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:aedddb89e400a6111f69bfe0c3fd4214e" id="r_aedddb89e400a6111f69bfe0c3fd4214e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aedddb89e400a6111f69bfe0c3fd4214e">build_reaclib_nuclear_network</a> (const fourdst::composition::Composition &amp;composition, <a class="el" href="#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a> maxLayers=<a class="el" href="#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a>, bool reverse=false)</td></tr>
-<tr class="memdesc:aedddb89e400a6111f69bfe0c3fd4214e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Builds a nuclear reaction network from the Reaclib library based on an initial composition.  <br /></td></tr>
-<tr class="separator:aedddb89e400a6111f69bfe0c3fd4214e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acd0bfdfbce4e84af102d62ff8a797c9f" id="r_acd0bfdfbce4e84af102d62ff8a797c9f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_priming_report.html">PrimingReport</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#acd0bfdfbce4e84af102d62ff8a797c9f">primeNetwork</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;, <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine)</td></tr>
-<tr class="memdesc:acd0bfdfbce4e84af102d62ff8a797c9f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Primes absent species in the network to their equilibrium abundances.  <br /></td></tr>
-<tr class="separator:acd0bfdfbce4e84af102d62ff8a797c9f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8f26d5f5fabb42e88261e42bc060cea2" id="r_a8f26d5f5fabb42e88261e42bc060cea2"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8f26d5f5fabb42e88261e42bc060cea2">calculateDestructionRateConstant</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const fourdst::atomic::Species &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho)</td></tr>
-<tr class="memdesc:a8f26d5f5fabb42e88261e42bc060cea2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes the destruction rate constant for a specific species.  <br /></td></tr>
-<tr class="separator:a8f26d5f5fabb42e88261e42bc060cea2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7c4b6104d5dfc5afddda36f726c5d07d" id="r_a7c4b6104d5dfc5afddda36f726c5d07d"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7c4b6104d5dfc5afddda36f726c5d07d">calculateCreationRate</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const fourdst::atomic::Species &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho)</td></tr>
-<tr class="memdesc:a7c4b6104d5dfc5afddda36f726c5d07d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes the creation rate for a specific species.  <br /></td></tr>
-<tr class="separator:a7c4b6104d5dfc5afddda36f726c5d07d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a745c6568723947f8e1ff874c9d3f4733" id="r_a745c6568723947f8e1ff874c9d3f4733"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">LogicalReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a745c6568723947f8e1ff874c9d3f4733">build_reaclib_nuclear_network</a> (const Composition &amp;composition, <a class="el" href="#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a> maxLayers, bool reverse)</td></tr>
-<tr class="separator:a745c6568723947f8e1ff874c9d3f4733"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aefc63ddbfe97dcb4178c94dfd1c4b256" id="r_aefc63ddbfe97dcb4178c94dfd1c4b256"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aefc63ddbfe97dcb4178c94dfd1c4b256">findDominantCreationChannel</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const Species &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho)</td></tr>
-<tr class="separator:aefc63ddbfe97dcb4178c94dfd1c4b256"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a384323338f13166d87c7ac047434bd38" id="r_a384323338f13166d87c7ac047434bd38"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a384323338f13166d87c7ac047434bd38">build_reaclib_nuclear_network</a> (const fourdst::composition::Composition &amp;composition, const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">rates::weak::WeakRateInterpolator</a> &amp;weakInterpolator, <a class="el" href="#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a> maxLayers=<a class="el" href="#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a>, bool reverse=false)</td></tr>
+<tr class="memdesc:a384323338f13166d87c7ac047434bd38"><td class="mdescLeft">&#160;</td><td class="mdescRight">Builds a nuclear reaction network from the Reaclib library based on an initial composition.  <br /></td></tr>
+<tr class="separator:a384323338f13166d87c7ac047434bd38"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3cd451f4b7a7bc7c2d7007ebb343e9ac" id="r_a3cd451f4b7a7bc7c2d7007ebb343e9ac"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_priming_report.html">PrimingReport</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3cd451f4b7a7bc7c2d7007ebb343e9ac">primeNetwork</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn, <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine)</td></tr>
+<tr class="memdesc:a3cd451f4b7a7bc7c2d7007ebb343e9ac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Primes absent species in the network to their equilibrium abundances.  <br /></td></tr>
+<tr class="separator:a3cd451f4b7a7bc7c2d7007ebb343e9ac"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab6e14208fad69f4031411a9346c12397" id="r_ab6e14208fad69f4031411a9346c12397"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab6e14208fad69f4031411a9346c12397">calculateDestructionRateConstant</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const fourdst::atomic::Species &amp;species, const fourdst::composition::Composition &amp;composition, double T9, double rho)</td></tr>
+<tr class="memdesc:ab6e14208fad69f4031411a9346c12397"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes the destruction rate constant for a specific species.  <br /></td></tr>
+<tr class="separator:ab6e14208fad69f4031411a9346c12397"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8995b949592d59850e45a3fd27306369" id="r_a8995b949592d59850e45a3fd27306369"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8995b949592d59850e45a3fd27306369">calculateCreationRate</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const fourdst::atomic::Species &amp;species, const fourdst::composition::Composition &amp;composition, double T9, double rho)</td></tr>
+<tr class="memdesc:a8995b949592d59850e45a3fd27306369"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes the creation rate for a specific species.  <br /></td></tr>
+<tr class="separator:a8995b949592d59850e45a3fd27306369"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a58a036e8883e75a8abd3e18798563f71" id="r_a58a036e8883e75a8abd3e18798563f71"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a58a036e8883e75a8abd3e18798563f71">build_nuclear_network</a> (const Composition &amp;composition, const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">rates::weak::WeakRateInterpolator</a> &amp;weak_interpolator, <a class="el" href="#a3b1f70dc7ff5b501809330a97079e4f6">BuildDepthType</a> maxLayers, bool reverse_reaclib)</td></tr>
+<tr class="separator:a58a036e8883e75a8abd3e18798563f71"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f" id="r_a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f">findDominantCreationChannel</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const Species &amp;species, const fourdst::composition::Composition &amp;comp, const double T9, const double rho)</td></tr>
+<tr class="separator:a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a023dc09e48b62e3f93f9a8b70cb2c63f" id="r_a023dc09e48b62e3f93f9a8b70cb2c63f"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a023dc09e48b62e3f93f9a8b70cb2c63f">calculateDestructionRateConstant</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const Species &amp;species, const Composition &amp;comp, const double T9, const double rho)</td></tr>
+<tr class="separator:a023dc09e48b62e3f93f9a8b70cb2c63f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a553717597efebcea94232a4a1d80e31d" id="r_a553717597efebcea94232a4a1d80e31d"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a553717597efebcea94232a4a1d80e31d">calculateCreationRate</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const Species &amp;species, const Composition &amp;comp, const double T9, const double rho)</td></tr>
+<tr class="separator:a553717597efebcea94232a4a1d80e31d"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a8b245f261cd8d1711ae8d593b054cf98" id="r_a8b245f261cd8d1711ae8d593b054cf98"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8b245f261cd8d1711ae8d593b054cf98">trim_whitespace</a> (const std::string &amp;str)</td></tr>
 <tr class="separator:a8b245f261cd8d1711ae8d593b054cf98"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
@@ -279,8 +287,6 @@ Variables</h2></td></tr>
 <tr class="separator:a02be158966bf82a91b159b7a962c3fa5"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a4e9cabad30b57d636c2f0d73d8cc6bb4" id="r_a4e9cabad30b57d636c2f0d73d8cc6bb4"><td class="memItemLeft" align="right" valign="top">static std::unordered_map&lt; <a class="el" href="#a3f3d6b3f9742b70e62049ccefbb60f37">NetworkFormat</a>, std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4e9cabad30b57d636c2f0d73d8cc6bb4">FormatStringLookup</a></td></tr>
 <tr class="separator:a4e9cabad30b57d636c2f0d73d8cc6bb4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8b632637f62614f509cde0e404a79054" id="r_a8b632637f62614f509cde0e404a79054"><td class="memItemLeft" align="right" valign="top">static int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8b632637f62614f509cde0e404a79054">s_operator_parens_called</a> = 0</td></tr>
-<tr class="separator:a8b632637f62614f509cde0e404a79054"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Typedef Documentation</h2>
 <a id="a1121d0b2d005195333412559fa29d3cc" name="a1121d0b2d005195333412559fa29d3cc"></a>
@@ -316,38 +322,6 @@ Variables</h2></td></tr>
 <dl class="section pre"><dt>Precondition</dt><dd>If using the integer alternative, the value must be &gt;= 0 or -1 to indicate a full build. </dd></dl>
 <dl class="section post"><dt>Postcondition</dt><dd>The network builder will interpret and apply the specified depth to control reaction expansion. </dd></dl>
 
-</div>
-</div>
-<a id="aa86f08712565f278adacc7cd2361eb31" name="aa86f08712565f278adacc7cd2361eb31"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa86f08712565f278adacc7cd2361eb31">&#9670;&#160;</a></span>LogicalReactionSet</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">using <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>A set of logical reactions. </p>
-
-</div>
-</div>
-<a id="ad838ce3fb6cc02c3fd90b924a0dd91b1" name="ad838ce3fb6cc02c3fd90b924a0dd91b1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad838ce3fb6cc02c3fd90b924a0dd91b1">&#9670;&#160;</a></span>ReactionSet</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">using <a class="el" href="namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1">gridfire::reaction::ReactionSet</a></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>A set of reactions, typically from a single source like REACLIB. </p>
-
 </div>
 </div>
 <a id="a898dfe22579e649935645cbd6f073178" name="a898dfe22579e649935645cbd6f073178"></a>
@@ -471,17 +445,22 @@ Variables</h2></td></tr>
 </div>
 </div>
 <h2 class="groupheader">Function Documentation</h2>
-<a id="a745c6568723947f8e1ff874c9d3f4733" name="a745c6568723947f8e1ff874c9d3f4733"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a745c6568723947f8e1ff874c9d3f4733">&#9670;&#160;</a></span>build_reaclib_nuclear_network() <span class="overload">[1/2]</span></h2>
+<a id="a58a036e8883e75a8abd3e18798563f71" name="a58a036e8883e75a8abd3e18798563f71"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a58a036e8883e75a8abd3e18798563f71">&#9670;&#160;</a></span>build_nuclear_network()</h2>
 
 <div class="memitem">
 <div class="memproto">
       <table class="memname">
         <tr>
-          <td class="memname"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">LogicalReactionSet</a> gridfire::build_reaclib_nuclear_network </td>
+          <td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> gridfire::build_nuclear_network </td>
           <td>(</td>
           <td class="paramtype">const Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>composition</em></span>, </td>
         </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">rates::weak::WeakRateInterpolator</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>weak_interpolator</em></span>, </td>
+        </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
@@ -490,24 +469,29 @@ Variables</h2></td></tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">bool</td>          <td class="paramname"><span class="paramname"><em>reverse</em></span>&#160;)</td>
+          <td class="paramtype">bool</td>          <td class="paramname"><span class="paramname"><em>reverse_reaclib</em></span>&#160;)</td>
         </tr>
       </table>
 </div><div class="memdoc">
 
 </div>
 </div>
-<a id="aedddb89e400a6111f69bfe0c3fd4214e" name="aedddb89e400a6111f69bfe0c3fd4214e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aedddb89e400a6111f69bfe0c3fd4214e">&#9670;&#160;</a></span>build_reaclib_nuclear_network() <span class="overload">[2/2]</span></h2>
+<a id="a384323338f13166d87c7ac047434bd38" name="a384323338f13166d87c7ac047434bd38"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a384323338f13166d87c7ac047434bd38">&#9670;&#160;</a></span>build_reaclib_nuclear_network()</h2>
 
 <div class="memitem">
 <div class="memproto">
       <table class="memname">
         <tr>
-          <td class="memname"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> gridfire::build_reaclib_nuclear_network </td>
+          <td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> gridfire::build_reaclib_nuclear_network </td>
           <td>(</td>
           <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>composition</em></span>, </td>
         </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">rates::weak::WeakRateInterpolator</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>weakInterpolator</em></span>, </td>
+        </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
@@ -527,6 +511,7 @@ Variables</h2></td></tr>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
     <tr><td class="paramname">composition</td><td>Mapping of isotopic species to their mass fractions; species with positive mass fraction seed the network. </td></tr>
+    <tr><td class="paramname">weakInterpolator</td><td></td></tr>
     <tr><td class="paramname">maxLayers</td><td>Variant specifying either a predefined <a class="el" href="#a0210bd2e07538932135a56b62b8ddb57" title="Specifies supported depths for building the reaction network.">NetworkBuildDepth</a> or a custom integer depth; negative depth (Full) collects all reactions, zero is invalid. </td></tr>
     <tr><td class="paramname">reverse</td><td>If true, collects reverse reactions (decays or back-reactions); if false, uses forward reactions. </td></tr>
   </table>
@@ -536,7 +521,7 @@ Variables</h2></td></tr>
 <dd>
 Resolved integer depth from maxLayers must not be zero. </dd></dl>
 <dl class="section post"><dt>Postcondition</dt><dd>Returned network includes only reactions satisfying the depth and reverse criteria. </dd></dl>
-<dl class="section return"><dt>Returns</dt><dd>A <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31" title="A set of logical reactions.">LogicalReactionSet</a> encapsulating the collected reactions for graph-based engines. </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>A LogicalReactionSet encapsulating the collected reactions for graph-based engines. </dd></dl>
 <dl class="exception"><dt>Exceptions</dt><dd>
   <table class="exception">
     <tr><td class="paramname">std::logic_error</td><td>If the resolved network depth is zero (no reactions can be collected). </td></tr>
@@ -546,8 +531,8 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
 
 </div>
 </div>
-<a id="a7c4b6104d5dfc5afddda36f726c5d07d" name="a7c4b6104d5dfc5afddda36f726c5d07d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7c4b6104d5dfc5afddda36f726c5d07d">&#9670;&#160;</a></span>calculateCreationRate()</h2>
+<a id="a8995b949592d59850e45a3fd27306369" name="a8995b949592d59850e45a3fd27306369"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8995b949592d59850e45a3fd27306369">&#9670;&#160;</a></span>calculateCreationRate() <span class="overload">[1/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -565,7 +550,7 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>composition</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -586,7 +571,7 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
   <table class="params">
     <tr><td class="paramname">engine</td><td><a class="el" href="classgridfire_1_1_engine.html" title="Abstract base class for a reaction network engine.">Engine</a> providing the current set of network reactions and flow calculations. </td></tr>
     <tr><td class="paramname">species</td><td>The atomic species whose creation rate is computed. </td></tr>
-    <tr><td class="paramname">Y</td><td>Vector of molar abundances for all species in the engine. </td></tr>
+    <tr><td class="paramname">composition</td><td>Composition object containing current abundances. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density of the medium. </td></tr>
   </table>
@@ -598,8 +583,44 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
 
 </div>
 </div>
-<a id="a8f26d5f5fabb42e88261e42bc060cea2" name="a8f26d5f5fabb42e88261e42bc060cea2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8f26d5f5fabb42e88261e42bc060cea2">&#9670;&#160;</a></span>calculateDestructionRateConstant()</h2>
+<a id="a553717597efebcea94232a4a1d80e31d" name="a553717597efebcea94232a4a1d80e31d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a553717597efebcea94232a4a1d80e31d">&#9670;&#160;</a></span>calculateCreationRate() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::calculateCreationRate </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>engine</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab6e14208fad69f4031411a9346c12397" name="ab6e14208fad69f4031411a9346c12397"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab6e14208fad69f4031411a9346c12397">&#9670;&#160;</a></span>calculateDestructionRateConstant() <span class="overload">[1/2]</span></h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -617,7 +638,7 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>composition</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -638,7 +659,7 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
   <table class="params">
     <tr><td class="paramname">engine</td><td><a class="el" href="classgridfire_1_1_engine.html" title="Abstract base class for a reaction network engine.">Engine</a> providing the current set of network reactions and flow calculations. </td></tr>
     <tr><td class="paramname">species</td><td>The atomic species whose destruction rate is computed. </td></tr>
-    <tr><td class="paramname">Y</td><td>Vector of molar abundances for all species in the engine. </td></tr>
+    <tr><td class="paramname">composition</td><td>Current composition providing abundances for all species. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density of the medium. </td></tr>
   </table>
@@ -650,8 +671,44 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
 
 </div>
 </div>
-<a id="aefc63ddbfe97dcb4178c94dfd1c4b256" name="aefc63ddbfe97dcb4178c94dfd1c4b256"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aefc63ddbfe97dcb4178c94dfd1c4b256">&#9670;&#160;</a></span>findDominantCreationChannel()</h2>
+<a id="a023dc09e48b62e3f93f9a8b70cb2c63f" name="a023dc09e48b62e3f93f9a8b70cb2c63f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a023dc09e48b62e3f93f9a8b70cb2c63f">&#9670;&#160;</a></span>calculateDestructionRateConstant() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::calculateDestructionRateConstant </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>engine</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const Species &amp;</td>          <td class="paramname"><span class="paramname"><em>species</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f" name="a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f">&#9670;&#160;</a></span>findDominantCreationChannel()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -669,7 +726,7 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -686,8 +743,8 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
 
 </div>
 </div>
-<a id="acd0bfdfbce4e84af102d62ff8a797c9f" name="acd0bfdfbce4e84af102d62ff8a797c9f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acd0bfdfbce4e84af102d62ff8a797c9f">&#9670;&#160;</a></span>primeNetwork()</h2>
+<a id="a3cd451f4b7a7bc7c2d7007ebb343e9ac" name="a3cd451f4b7a7bc7c2d7007ebb343e9ac"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3cd451f4b7a7bc7c2d7007ebb343e9ac">&#9670;&#160;</a></span>primeNetwork()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -706,6 +763,7 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
 </div><div class="memdoc">
 
 <p>Primes absent species in the network to their equilibrium abundances. </p>
+<p>Primes absent species in the network to their equilibrium abundances using a robust, two-stage approach.</p>
 <p>Executes a network priming algorithm that iteratively rebuilds the reaction network, calculates equilibrium mass fractions for species with zero initial abundance, and applies mass transfers based on reaction flows.</p>
 <p>Refer to <a class="el" href="priming_8cpp.html">priming.cpp</a> for implementation details on logging, algorithmic steps, and error handling.</p>
 <dl class="params"><dt>Parameters</dt><dd>
@@ -717,7 +775,21 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
 </dl>
 <dl class="section pre"><dt>Precondition</dt><dd>netIn.composition defines species and their mass fractions; engine is constructed with a valid network. </dd></dl>
 <dl class="section post"><dt>Postcondition</dt><dd>engine.networkReactions restored to its initial state; returned report contains primedComposition, massFractionChanges for each species, success flag, and status code. </dd></dl>
-<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1_priming_report.html" title="Captures the result of a network priming operation.">PrimingReport</a> encapsulating the results of the priming operation. </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1_priming_report.html" title="Captures the result of a network priming operation.">PrimingReport</a> encapsulating the results of the priming operation.</dd></dl>
+<p>This function implements a robust network priming algorithm that avoids the pitfalls of sequential, one-by-one priming. The previous, brittle method could allow an early priming reaction to consume all of a shared reactant, starving later reactions. This new, two-stage method ensures that all priming reactions are considered collectively, competing for the same limited pool of initial reactants in a physically consistent manner.</p>
+<p>The algorithm proceeds in three main stages:</p><ol type="1">
+<li><b>Calculation Stage:</b> It first loops through all species that need priming. For each one, it calculates its theoretical equilibrium mass fraction and identifies the dominant creation channel. Crucially, it <em>does not</em> modify any abundances at this stage. Instead, it stores these calculations as a list of "mass transfer requests".</li>
+<li><b>Collective Scaling Stage:</b> It then processes the full list of requests to determine the total "debit" required from each reactant. By comparing these total debits to the initially available mass of each reactant, it calculates a single, global <code>scalingFactor</code>. If any reactant is overdrawn, this factor will be less than 1.0, ensuring that no reactant's abundance can go negative.</li>
+<li><b>Application Stage:</b> Finally, it loops through the requests again, applying the mass transfers. Each calculated equilibrium mass fraction and corresponding reactant debit is multiplied by the global <code>scalingFactor</code> before being applied to the final composition. This ensures that if resources are limited, all primed species are scaled down proportionally.</li>
+</ol>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>Input network data containing initial composition, temperature, and density. </td></tr>
+    <tr><td class="paramname">engine</td><td><a class="el" href="classgridfire_1_1_dynamic_engine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> used to build and evaluate the reaction network. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1_priming_report.html" title="Captures the result of a network priming operation.">PrimingReport</a> encapsulating the results of the priming operation, including the new robustly primed composition. </dd></dl>
 
 </div>
 </div>
@@ -763,9 +835,9 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
 <div class="line">        {<a class="code hl_enumvalue" href="#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182">REACLIB</a>, <span class="stringliteral">&quot;REACLIB&quot;</span>},</div>
 <div class="line">        {<a class="code hl_enumvalue" href="#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2">UNKNOWN</a>, <span class="stringliteral">&quot;Unknown&quot;</span>}</div>
 <div class="line">    }</div>
-<div class="ttc" id="anamespacegridfire_html_a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea"><div class="ttname"><a href="#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea">gridfire::APPROX8</a></div><div class="ttdeci">@ APPROX8</div><div class="ttdoc">Approx8 nuclear reaction network format.</div><div class="ttdef"><b>Definition</b> network.h:42</div></div>
-<div class="ttc" id="anamespacegridfire_html_a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182"><div class="ttname"><a href="#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182">gridfire::REACLIB</a></div><div class="ttdeci">@ REACLIB</div><div class="ttdoc">General REACLIB nuclear reaction network format.</div><div class="ttdef"><b>Definition</b> network.h:43</div></div>
-<div class="ttc" id="anamespacegridfire_html_a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2"><div class="ttname"><a href="#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2">gridfire::UNKNOWN</a></div><div class="ttdeci">@ UNKNOWN</div><div class="ttdef"><b>Definition</b> network.h:44</div></div>
+<div class="ttc" id="anamespacegridfire_html_a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea"><div class="ttname"><a href="#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea">gridfire::APPROX8</a></div><div class="ttdeci">@ APPROX8</div><div class="ttdoc">Approx8 nuclear reaction network format.</div><div class="ttdef"><b>Definition</b> network.h:40</div></div>
+<div class="ttc" id="anamespacegridfire_html_a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182"><div class="ttname"><a href="#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182">gridfire::REACLIB</a></div><div class="ttdeci">@ REACLIB</div><div class="ttdoc">General REACLIB nuclear reaction network format.</div><div class="ttdef"><b>Definition</b> network.h:41</div></div>
+<div class="ttc" id="anamespacegridfire_html_a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2"><div class="ttname"><a href="#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2">gridfire::UNKNOWN</a></div><div class="ttdeci">@ UNKNOWN</div><div class="ttdef"><b>Definition</b> network.h:42</div></div>
 </div><!-- fragment -->
 </div>
 </div>
@@ -883,28 +955,6 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
 <p>Mapping from <a class="el" href="#a8bea3d74f35d640e693fa398e9b3e154" title="Enumerates outcome codes for a network priming operation.">PrimingReportStatus</a> codes to human-readable strings. </p>
 <p>Used when formatting or logging the priming status. No preconditions. The map contains entries for all <a class="el" href="#a8bea3d74f35d640e693fa398e9b3e154" title="Enumerates outcome codes for a network priming operation.">PrimingReportStatus</a> values. </p>
 
-</div>
-</div>
-<a id="a8b632637f62614f509cde0e404a79054" name="a8b632637f62614f509cde0e404a79054"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8b632637f62614f509cde0e404a79054">&#9670;&#160;</a></span>s_operator_parens_called</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">int gridfire::s_operator_parens_called = 0</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel static">static</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
 </div>
 </div>
 </div><!-- contents -->
diff --git a/docs/html/namespacegridfire.js b/docs/html/namespacegridfire.js
index 11e12427..7526b256 100644
--- a/docs/html/namespacegridfire.js
+++ b/docs/html/namespacegridfire.js
@@ -1,20 +1,26 @@
 var namespacegridfire =
 [
     [ "approx8", "namespacegridfire_1_1approx8.html", "namespacegridfire_1_1approx8" ],
+    [ "diagnostics", "namespacegridfire_1_1diagnostics.html", [
+      [ "inspect_jacobian_stiffness", "namespacegridfire_1_1diagnostics.html#a066ee899bd259062716f25abae3890b0", null ],
+      [ "inspect_species_balance", "namespacegridfire_1_1diagnostics.html#a11c0d538e7244bee168d7f9217442128", null ],
+      [ "report_limiting_species", "namespacegridfire_1_1diagnostics.html#a9d95a6c9c4a942d71ff4c8046fe4107a", null ]
+    ] ],
     [ "exceptions", "namespacegridfire_1_1exceptions.html", "namespacegridfire_1_1exceptions" ],
     [ "expectations", "namespacegridfire_1_1expectations.html", "namespacegridfire_1_1expectations" ],
     [ "io", "namespacegridfire_1_1io.html", "namespacegridfire_1_1io" ],
     [ "partition", "namespacegridfire_1_1partition.html", "namespacegridfire_1_1partition" ],
+    [ "rates", "namespacegridfire_1_1rates.html", "namespacegridfire_1_1rates" ],
     [ "reaclib", "namespacegridfire_1_1reaclib.html", "namespacegridfire_1_1reaclib" ],
     [ "reaction", "namespacegridfire_1_1reaction.html", "namespacegridfire_1_1reaction" ],
     [ "screening", "namespacegridfire_1_1screening.html", "namespacegridfire_1_1screening" ],
     [ "solver", "namespacegridfire_1_1solver.html", "namespacegridfire_1_1solver" ],
-    [ "utils", "namespacegridfire_1_1utils.html", [
-      [ "formatNuclearTimescaleLogString", "namespacegridfire_1_1utils.html#af56693a70d9e2b40c8ae2c3bcd4b26c8", null ]
-    ] ],
+    [ "trigger", "namespacegridfire_1_1trigger.html", "namespacegridfire_1_1trigger" ],
+    [ "utils", "namespacegridfire_1_1utils.html", "namespacegridfire_1_1utils" ],
     [ "AdaptiveEngineView", "classgridfire_1_1_adaptive_engine_view.html", "classgridfire_1_1_adaptive_engine_view" ],
     [ "DefinedEngineView", "classgridfire_1_1_defined_engine_view.html", "classgridfire_1_1_defined_engine_view" ],
     [ "DynamicEngine", "classgridfire_1_1_dynamic_engine.html", "classgridfire_1_1_dynamic_engine" ],
+    [ "EnergyDerivatives", "structgridfire_1_1_energy_derivatives.html", "structgridfire_1_1_energy_derivatives" ],
     [ "Engine", "classgridfire_1_1_engine.html", "classgridfire_1_1_engine" ],
     [ "EngineView", "classgridfire_1_1_engine_view.html", "classgridfire_1_1_engine_view" ],
     [ "FileDefinedEngineView", "classgridfire_1_1_file_defined_engine_view.html", "classgridfire_1_1_file_defined_engine_view" ],
@@ -28,13 +34,12 @@ var namespacegridfire =
     [ "QSECacheConfig", "structgridfire_1_1_q_s_e_cache_config.html", "structgridfire_1_1_q_s_e_cache_config" ],
     [ "QSECacheKey", "structgridfire_1_1_q_s_e_cache_key.html", "structgridfire_1_1_q_s_e_cache_key" ],
     [ "Reaction", "classgridfire_1_1_reaction.html", "classgridfire_1_1_reaction" ],
+    [ "ReactionSet", "classgridfire_1_1_reaction_set.html", "classgridfire_1_1_reaction_set" ],
     [ "StepDerivatives", "structgridfire_1_1_step_derivatives.html", "structgridfire_1_1_step_derivatives" ],
     [ "IsArithmeticOrAD", "conceptgridfire_1_1_is_arithmetic_or_a_d.html", null ],
     [ "EngineType", "conceptgridfire_1_1_engine_type.html", null ],
     [ "ADDouble", "namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc", null ],
     [ "BuildDepthType", "namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6", null ],
-    [ "LogicalReactionSet", "namespacegridfire.html#aa86f08712565f278adacc7cd2361eb31", null ],
-    [ "ReactionSet", "namespacegridfire.html#ad838ce3fb6cc02c3fd90b924a0dd91b1", null ],
     [ "SparsityPattern", "namespacegridfire.html#a898dfe22579e649935645cbd6f073178", null ],
     [ "NetworkBuildDepth", "namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57", [
       [ "Full", "namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75", null ],
@@ -58,17 +63,18 @@ var namespacegridfire =
       [ "FAILED_TO_FIND_PRIMING_REACTIONS", "namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931", null ],
       [ "BASE_NETWORK_TOO_SHALLOW", "namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e", null ]
     ] ],
-    [ "build_reaclib_nuclear_network", "namespacegridfire.html#a745c6568723947f8e1ff874c9d3f4733", null ],
-    [ "build_reaclib_nuclear_network", "namespacegridfire.html#aedddb89e400a6111f69bfe0c3fd4214e", null ],
-    [ "calculateCreationRate", "namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d", null ],
-    [ "calculateDestructionRateConstant", "namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2", null ],
-    [ "findDominantCreationChannel", "namespacegridfire.html#aefc63ddbfe97dcb4178c94dfd1c4b256", null ],
-    [ "primeNetwork", "namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f", null ],
+    [ "build_nuclear_network", "namespacegridfire.html#a58a036e8883e75a8abd3e18798563f71", null ],
+    [ "build_reaclib_nuclear_network", "namespacegridfire.html#a384323338f13166d87c7ac047434bd38", null ],
+    [ "calculateCreationRate", "namespacegridfire.html#a8995b949592d59850e45a3fd27306369", null ],
+    [ "calculateCreationRate", "namespacegridfire.html#a553717597efebcea94232a4a1d80e31d", null ],
+    [ "calculateDestructionRateConstant", "namespacegridfire.html#ab6e14208fad69f4031411a9346c12397", null ],
+    [ "calculateDestructionRateConstant", "namespacegridfire.html#a023dc09e48b62e3f93f9a8b70cb2c63f", null ],
+    [ "findDominantCreationChannel", "namespacegridfire.html#a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f", null ],
+    [ "primeNetwork", "namespacegridfire.html#a3cd451f4b7a7bc7c2d7007ebb343e9ac", null ],
     [ "trim_whitespace", "namespacegridfire.html#a8b245f261cd8d1711ae8d593b054cf98", null ],
     [ "FormatStringLookup", "namespacegridfire.html#a4e9cabad30b57d636c2f0d73d8cc6bb4", null ],
     [ "MIN_ABUNDANCE_THRESHOLD", "namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06", null ],
     [ "MIN_DENSITY_THRESHOLD", "namespacegridfire.html#ada3c137c014ecd8d06200fea2d1a9f50", null ],
     [ "MIN_JACOBIAN_THRESHOLD", "namespacegridfire.html#ae01b1738df1921db565bcbd68dd6cf64", null ],
-    [ "PrimingReportStatusStrings", "namespacegridfire.html#a02be158966bf82a91b159b7a962c3fa5", null ],
-    [ "s_operator_parens_called", "namespacegridfire.html#a8b632637f62614f509cde0e404a79054", null ]
+    [ "PrimingReportStatusStrings", "namespacegridfire.html#a02be158966bf82a91b159b7a962c3fa5", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/namespacegridfire_1_1diagnostics.html b/docs/html/namespacegridfire_1_1diagnostics.html
new file mode 100644
index 00000000..5227d22f
--- /dev/null
+++ b/docs/html/namespacegridfire_1_1diagnostics.html
@@ -0,0 +1,241 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::diagnostics Namespace Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('namespacegridfire_1_1diagnostics.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#func-members">Functions</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::diagnostics Namespace Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:a9d95a6c9c4a942d71ff4c8046fe4107a" id="r_a9d95a6c9c4a942d71ff4c8046fe4107a"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9d95a6c9c4a942d71ff4c8046fe4107a">report_limiting_species</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const std::vector&lt; double &gt; &amp;Y_full, const std::vector&lt; double &gt; &amp;E_full, const std::vector&lt; double &gt; &amp;dydt_full, double relTol, double absTol, size_t top_n=10)</td></tr>
+<tr class="separator:a9d95a6c9c4a942d71ff4c8046fe4107a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a11c0d538e7244bee168d7f9217442128" id="r_a11c0d538e7244bee168d7f9217442128"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a11c0d538e7244bee168d7f9217442128">inspect_species_balance</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const std::string &amp;species_name, const fourdst::composition::Composition &amp;comp, double T9, double rho)</td></tr>
+<tr class="separator:a11c0d538e7244bee168d7f9217442128"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a066ee899bd259062716f25abae3890b0" id="r_a066ee899bd259062716f25abae3890b0"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a066ee899bd259062716f25abae3890b0">inspect_jacobian_stiffness</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const fourdst::composition::Composition &amp;comp, double T9, double rho)</td></tr>
+<tr class="separator:a066ee899bd259062716f25abae3890b0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Function Documentation</h2>
+<a id="a066ee899bd259062716f25abae3890b0" name="a066ee899bd259062716f25abae3890b0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a066ee899bd259062716f25abae3890b0">&#9670;&#160;</a></span>inspect_jacobian_stiffness()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::diagnostics::inspect_jacobian_stiffness </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>engine</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a11c0d538e7244bee168d7f9217442128" name="a11c0d538e7244bee168d7f9217442128"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a11c0d538e7244bee168d7f9217442128">&#9670;&#160;</a></span>inspect_species_balance()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::diagnostics::inspect_species_balance </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>engine</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::string &amp;</td>          <td class="paramname"><span class="paramname"><em>species_name</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a9d95a6c9c4a942d71ff4c8046fe4107a" name="a9d95a6c9c4a942d71ff4c8046fe4107a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9d95a6c9c4a942d71ff4c8046fe4107a">&#9670;&#160;</a></span>report_limiting_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::diagnostics::report_limiting_species </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>engine</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_full</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>E_full</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>dydt_full</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>relTol</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>absTol</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t</td>          <td class="paramname"><span class="paramname"><em>top_n</em></span><span class="paramdefsep"> = </span><span class="paramdefval">10</span>&#160;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1diagnostics.html">diagnostics</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/namespacegridfire_1_1rates.html b/docs/html/namespacegridfire_1_1rates.html
new file mode 100644
index 00000000..2a7c14fe
--- /dev/null
+++ b/docs/html/namespacegridfire_1_1rates.html
@@ -0,0 +1,123 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::rates Namespace Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('namespacegridfire_1_1rates.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#namespaces">Namespaces</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates Namespace Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">weak</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates.html">rates</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/namespacegridfire_1_1rates.js b/docs/html/namespacegridfire_1_1rates.js
new file mode 100644
index 00000000..b971a2b4
--- /dev/null
+++ b/docs/html/namespacegridfire_1_1rates.js
@@ -0,0 +1,4 @@
+var namespacegridfire_1_1rates =
+[
+    [ "weak", "namespacegridfire_1_1rates_1_1weak.html", "namespacegridfire_1_1rates_1_1weak" ]
+];
\ No newline at end of file
diff --git a/docs/html/namespacegridfire_1_1rates_1_1weak.html b/docs/html/namespacegridfire_1_1rates_1_1weak.html
new file mode 100644
index 00000000..f6d3beb2
--- /dev/null
+++ b/docs/html/namespacegridfire_1_1rates_1_1weak.html
@@ -0,0 +1,456 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::rates::weak Namespace Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('namespacegridfire_1_1rates_1_1weak.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#enum-members">Enumerations</a> &#124;
+<a href="#func-members">Functions</a> &#124;
+<a href="#var-members">Variables</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak Namespace Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html">BoundsErrorInfo</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Detailed bounds information for a BOUNDS_ERROR.  <a href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html">InterpolationError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interpolation error with optional per-axis bounds details.  <a href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html">IsotopeGrid</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Regular 3D grid and payloads for a single isotope (A,Z).  <a href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">RateDataRow</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">One row of the unified weak-rate data table for a specific isotope and state.  <a href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html">WeakRateDerivatives</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye), mu_e).  <a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">WeakRateInterpolator</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">3D table interpolator for tabulated weak reaction data by isotope.  <a href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">WeakRatePayload</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interpolated weak-rate payload at a single state.  <a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">WeakReaction</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Concrete <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> representing a single weak process (beta±, e−/e+ capture).  <a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A single weak-reaction data point (type, state, and log values).  <a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html">WeakReactionMap</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Index of available weak reactions keyed by species.  <a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="enum-members" name="enum-members"></a>
+Enumerations</h2></td></tr>
+<tr class="memitem:ae834fb6f8cd1ac922967d5296a25bec7" id="r_ae834fb6f8cd1ac922967d5296a25bec7"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a> { <a class="el" href="#ae834fb6f8cd1ac922967d5296a25bec7a2f146a0cd66e2d010c8802852db26759">BETA_PLUS_DECAY</a>
+, <a class="el" href="#ae834fb6f8cd1ac922967d5296a25bec7a12122315f1a94a10826f77a8fd949a94">BETA_MINUS_DECAY</a>
+, <a class="el" href="#ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7">ELECTRON_CAPTURE</a>
+, <a class="el" href="#ae834fb6f8cd1ac922967d5296a25bec7ae0be5539e1cf1c424806baa62540aa9d">POSITRON_CAPTURE</a>
+ }</td></tr>
+<tr class="memdesc:ae834fb6f8cd1ac922967d5296a25bec7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Weak reaction channel identifiers.  <a href="#ae834fb6f8cd1ac922967d5296a25bec7">More...</a><br /></td></tr>
+<tr class="separator:ae834fb6f8cd1ac922967d5296a25bec7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aeddc9527afbf9755d4252f64ad5d70ca" id="r_aeddc9527afbf9755d4252f64ad5d70ca"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aeddc9527afbf9755d4252f64ad5d70ca">NeutrinoTypes</a> { <br />
+&#160;&#160;<a class="el" href="#aeddc9527afbf9755d4252f64ad5d70caa3fde0fbf2166dfb3dd60458c535699d8">ELECTRON_NEUTRINO</a>
+, <a class="el" href="#aeddc9527afbf9755d4252f64ad5d70caa8d99b7a21c927a7b8274caaf23290de6">ELECTRON_ANTINEUTRINO</a>
+, <a class="el" href="#aeddc9527afbf9755d4252f64ad5d70caaabd6fefb3f84f632c3968acfcd76d554">MUON_NEUTRINO</a>
+, <a class="el" href="#aeddc9527afbf9755d4252f64ad5d70caae6f2e17ddd61e72e331faf8700bbedef">MUON_ANTINEUTRINO</a>
+, <br />
+&#160;&#160;<a class="el" href="#aeddc9527afbf9755d4252f64ad5d70caa8c2cdafd7125a278e6e0da4c04e29d9e">TAU_NEUTRINO</a>
+, <a class="el" href="#aeddc9527afbf9755d4252f64ad5d70caa2712e9cfc69c4ee0c4ed136338acb6cc">TAU_ANTINEUTRINO</a>
+<br />
+ }</td></tr>
+<tr class="memdesc:aeddc9527afbf9755d4252f64ad5d70ca"><td class="mdescLeft">&#160;</td><td class="mdescRight">Enumeration of neutrino flavors (for potential extensions and tagging).  <a href="#aeddc9527afbf9755d4252f64ad5d70ca">More...</a><br /></td></tr>
+<tr class="separator:aeddc9527afbf9755d4252f64ad5d70ca"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a15ca7b1a1951c131fddb9eb011d59550" id="r_a15ca7b1a1951c131fddb9eb011d59550"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a15ca7b1a1951c131fddb9eb011d59550">WeakMapError</a> { <a class="el" href="#a15ca7b1a1951c131fddb9eb011d59550a3659baf2b06bba6c02bad8316d517761">SPECIES_NOT_FOUND</a>
+, <a class="el" href="#a15ca7b1a1951c131fddb9eb011d59550a9a10f345b0f755d461a8673a5e9ef6b4">UNKNOWN_ERROR</a>
+ }</td></tr>
+<tr class="memdesc:a15ca7b1a1951c131fddb9eb011d59550"><td class="mdescLeft">&#160;</td><td class="mdescRight">Lookup errors for WeakReactionMap queries.  <a href="#a15ca7b1a1951c131fddb9eb011d59550">More...</a><br /></td></tr>
+<tr class="separator:a15ca7b1a1951c131fddb9eb011d59550"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3fc4243d5c894779b986110c3a1ee1d4" id="r_a3fc4243d5c894779b986110c3a1ee1d4"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3fc4243d5c894779b986110c3a1ee1d4">InterpolationErrorType</a> { <a class="el" href="#a3fc4243d5c894779b986110c3a1ee1d4a1516ba0949425312ba92ea385c80dc7a">BOUNDS_ERROR</a>
+, <a class="el" href="#a3fc4243d5c894779b986110c3a1ee1d4acc038b1c5dbfcede2eaa525fe0e2379d">UNKNOWN_SPECIES_ERROR</a>
+, <a class="el" href="#a3fc4243d5c894779b986110c3a1ee1d4a9a10f345b0f755d461a8673a5e9ef6b4">UNKNOWN_ERROR</a>
+ }</td></tr>
+<tr class="memdesc:a3fc4243d5c894779b986110c3a1ee1d4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Error categories for interpolation attempts.  <a href="#a3fc4243d5c894779b986110c3a1ee1d4">More...</a><br /></td></tr>
+<tr class="separator:a3fc4243d5c894779b986110c3a1ee1d4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5e6ecdf02b9748cf1b0a15a5cc1b34ae" id="r_a5e6ecdf02b9748cf1b0a15a5cc1b34ae"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">TableAxes</a> { <a class="el" href="#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755">T9</a>
+, <a class="el" href="#a5e6ecdf02b9748cf1b0a15a5cc1b34aea1448b5920e7c95f07cbc08d3ba5b9746">LOG_RHOYE</a>
+, <a class="el" href="#a5e6ecdf02b9748cf1b0a15a5cc1b34aea5257ed2407fcbb45ab05897fdea80c2b">MUE</a>
+ }</td></tr>
+<tr class="memdesc:a5e6ecdf02b9748cf1b0a15a5cc1b34ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Axes of the interpolation table.  <a href="#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">More...</a><br /></td></tr>
+<tr class="separator:a5e6ecdf02b9748cf1b0a15a5cc1b34ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:a81f6133710abef28d9d2b030fdbaaeef" id="r_a81f6133710abef28d9d2b030fdbaaeef"><td class="memItemLeft" align="right" valign="top">constexpr std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a81f6133710abef28d9d2b030fdbaaeef">weak_reaction_type_name</a> (const <a class="el" href="#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a> t) noexcept</td></tr>
+<tr class="memdesc:a81f6133710abef28d9d2b030fdbaaeef"><td class="mdescLeft">&#160;</td><td class="mdescRight">Abbreviated channel name used in printing and IDs.  <br /></td></tr>
+<tr class="separator:a81f6133710abef28d9d2b030fdbaaeef"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="var-members" name="var-members"></a>
+Variables</h2></td></tr>
+<tr class="memitem:ac48364695089056d9a9b10689c4338e7" id="r_ac48364695089056d9a9b10689c4338e7"><td class="memItemLeft" align="right" valign="top">static constexpr std::array&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">RateDataRow</a>, 77400 &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac48364695089056d9a9b10689c4338e7">UNIFIED_WEAK_DATA</a></td></tr>
+<tr class="separator:ac48364695089056d9a9b10689c4338e7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7a262a98e1956c33645bad4eb4e40c7a" id="r_a7a262a98e1956c33645bad4eb4e40c7a"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; <a class="el" href="#a3fc4243d5c894779b986110c3a1ee1d4">InterpolationErrorType</a>, std::string_view &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7a262a98e1956c33645bad4eb4e40c7a">InterpolationErrorTypeMap</a></td></tr>
+<tr class="memdesc:a7a262a98e1956c33645bad4eb4e40c7a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable names for <a class="el" href="#a3fc4243d5c894779b986110c3a1ee1d4" title="Error categories for interpolation attempts.">InterpolationErrorType</a>.  <br /></td></tr>
+<tr class="separator:a7a262a98e1956c33645bad4eb4e40c7a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Enumeration Type Documentation</h2>
+<a id="a3fc4243d5c894779b986110c3a1ee1d4" name="a3fc4243d5c894779b986110c3a1ee1d4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3fc4243d5c894779b986110c3a1ee1d4">&#9670;&#160;</a></span>InterpolationErrorType</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">enum class <a class="el" href="#a3fc4243d5c894779b986110c3a1ee1d4">gridfire::rates::weak::InterpolationErrorType</a></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel strong">strong</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Error categories for interpolation attempts. </p>
+<table class="fieldtable">
+<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="a3fc4243d5c894779b986110c3a1ee1d4a1516ba0949425312ba92ea385c80dc7a" name="a3fc4243d5c894779b986110c3a1ee1d4a1516ba0949425312ba92ea385c80dc7a"></a>BOUNDS_ERROR&#160;</td><td class="fielddoc"><p>Query outside the per-axis min/max of the table. </p>
+</td></tr>
+<tr><td class="fieldname"><a id="a3fc4243d5c894779b986110c3a1ee1d4acc038b1c5dbfcede2eaa525fe0e2379d" name="a3fc4243d5c894779b986110c3a1ee1d4acc038b1c5dbfcede2eaa525fe0e2379d"></a>UNKNOWN_SPECIES_ERROR&#160;</td><td class="fielddoc"><p>Requested (A,Z) not present in the tables. </p>
+</td></tr>
+<tr><td class="fieldname"><a id="a3fc4243d5c894779b986110c3a1ee1d4a9a10f345b0f755d461a8673a5e9ef6b4" name="a3fc4243d5c894779b986110c3a1ee1d4a9a10f345b0f755d461a8673a5e9ef6b4"></a>UNKNOWN_ERROR&#160;</td><td class="fielddoc"></td></tr>
+</table>
+
+</div>
+</div>
+<a id="aeddc9527afbf9755d4252f64ad5d70ca" name="aeddc9527afbf9755d4252f64ad5d70ca"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aeddc9527afbf9755d4252f64ad5d70ca">&#9670;&#160;</a></span>NeutrinoTypes</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">enum class <a class="el" href="#aeddc9527afbf9755d4252f64ad5d70ca">gridfire::rates::weak::NeutrinoTypes</a></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel strong">strong</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Enumeration of neutrino flavors (for potential extensions and tagging). </p>
+<table class="fieldtable">
+<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="aeddc9527afbf9755d4252f64ad5d70caa3fde0fbf2166dfb3dd60458c535699d8" name="aeddc9527afbf9755d4252f64ad5d70caa3fde0fbf2166dfb3dd60458c535699d8"></a>ELECTRON_NEUTRINO&#160;</td><td class="fielddoc"></td></tr>
+<tr><td class="fieldname"><a id="aeddc9527afbf9755d4252f64ad5d70caa8d99b7a21c927a7b8274caaf23290de6" name="aeddc9527afbf9755d4252f64ad5d70caa8d99b7a21c927a7b8274caaf23290de6"></a>ELECTRON_ANTINEUTRINO&#160;</td><td class="fielddoc"></td></tr>
+<tr><td class="fieldname"><a id="aeddc9527afbf9755d4252f64ad5d70caaabd6fefb3f84f632c3968acfcd76d554" name="aeddc9527afbf9755d4252f64ad5d70caaabd6fefb3f84f632c3968acfcd76d554"></a>MUON_NEUTRINO&#160;</td><td class="fielddoc"></td></tr>
+<tr><td class="fieldname"><a id="aeddc9527afbf9755d4252f64ad5d70caae6f2e17ddd61e72e331faf8700bbedef" name="aeddc9527afbf9755d4252f64ad5d70caae6f2e17ddd61e72e331faf8700bbedef"></a>MUON_ANTINEUTRINO&#160;</td><td class="fielddoc"></td></tr>
+<tr><td class="fieldname"><a id="aeddc9527afbf9755d4252f64ad5d70caa8c2cdafd7125a278e6e0da4c04e29d9e" name="aeddc9527afbf9755d4252f64ad5d70caa8c2cdafd7125a278e6e0da4c04e29d9e"></a>TAU_NEUTRINO&#160;</td><td class="fielddoc"></td></tr>
+<tr><td class="fieldname"><a id="aeddc9527afbf9755d4252f64ad5d70caa2712e9cfc69c4ee0c4ed136338acb6cc" name="aeddc9527afbf9755d4252f64ad5d70caa2712e9cfc69c4ee0c4ed136338acb6cc"></a>TAU_ANTINEUTRINO&#160;</td><td class="fielddoc"></td></tr>
+</table>
+
+</div>
+</div>
+<a id="a5e6ecdf02b9748cf1b0a15a5cc1b34ae" name="a5e6ecdf02b9748cf1b0a15a5cc1b34ae"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">&#9670;&#160;</a></span>TableAxes</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">enum class <a class="el" href="#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">gridfire::rates::weak::TableAxes</a></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel strong">strong</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Axes of the interpolation table. </p>
+<table class="fieldtable">
+<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755" name="a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755"></a>T9&#160;</td><td class="fielddoc"><p>Temperature in GK. </p>
+</td></tr>
+<tr><td class="fieldname"><a id="a5e6ecdf02b9748cf1b0a15a5cc1b34aea1448b5920e7c95f07cbc08d3ba5b9746" name="a5e6ecdf02b9748cf1b0a15a5cc1b34aea1448b5920e7c95f07cbc08d3ba5b9746"></a>LOG_RHOYE&#160;</td><td class="fielddoc"><p>log10(rho*Ye). </p>
+</td></tr>
+<tr><td class="fieldname"><a id="a5e6ecdf02b9748cf1b0a15a5cc1b34aea5257ed2407fcbb45ab05897fdea80c2b" name="a5e6ecdf02b9748cf1b0a15a5cc1b34aea5257ed2407fcbb45ab05897fdea80c2b"></a>MUE&#160;</td><td class="fielddoc"><p>Electron chemical potential (MeV). </p>
+</td></tr>
+</table>
+
+</div>
+</div>
+<a id="a15ca7b1a1951c131fddb9eb011d59550" name="a15ca7b1a1951c131fddb9eb011d59550"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a15ca7b1a1951c131fddb9eb011d59550">&#9670;&#160;</a></span>WeakMapError</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">enum class <a class="el" href="#a15ca7b1a1951c131fddb9eb011d59550">gridfire::rates::weak::WeakMapError</a></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel strong">strong</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Lookup errors for <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html" title="Index of available weak reactions keyed by species.">WeakReactionMap</a> queries. </p>
+<table class="fieldtable">
+<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="a15ca7b1a1951c131fddb9eb011d59550a3659baf2b06bba6c02bad8316d517761" name="a15ca7b1a1951c131fddb9eb011d59550a3659baf2b06bba6c02bad8316d517761"></a>SPECIES_NOT_FOUND&#160;</td><td class="fielddoc"><p>No entries for the requested Species. </p>
+</td></tr>
+<tr><td class="fieldname"><a id="a15ca7b1a1951c131fddb9eb011d59550a9a10f345b0f755d461a8673a5e9ef6b4" name="a15ca7b1a1951c131fddb9eb011d59550a9a10f345b0f755d461a8673a5e9ef6b4"></a>UNKNOWN_ERROR&#160;</td><td class="fielddoc"></td></tr>
+</table>
+
+</div>
+</div>
+<a id="ae834fb6f8cd1ac922967d5296a25bec7" name="ae834fb6f8cd1ac922967d5296a25bec7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae834fb6f8cd1ac922967d5296a25bec7">&#9670;&#160;</a></span>WeakReactionType</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">enum class <a class="el" href="#ae834fb6f8cd1ac922967d5296a25bec7">gridfire::rates::weak::WeakReactionType</a></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel strong">strong</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Weak reaction channel identifiers. </p>
+<table class="fieldtable">
+<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="ae834fb6f8cd1ac922967d5296a25bec7a2f146a0cd66e2d010c8802852db26759" name="ae834fb6f8cd1ac922967d5296a25bec7a2f146a0cd66e2d010c8802852db26759"></a>BETA_PLUS_DECAY&#160;</td><td class="fielddoc"><p>β+ decay: Z -&gt; Z-1 + e+ + ν_e </p>
+</td></tr>
+<tr><td class="fieldname"><a id="ae834fb6f8cd1ac922967d5296a25bec7a12122315f1a94a10826f77a8fd949a94" name="ae834fb6f8cd1ac922967d5296a25bec7a12122315f1a94a10826f77a8fd949a94"></a>BETA_MINUS_DECAY&#160;</td><td class="fielddoc"><p>β− decay: Z -&gt; Z+1 + e− + ν̄_e </p>
+</td></tr>
+<tr><td class="fieldname"><a id="ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7" name="ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7"></a>ELECTRON_CAPTURE&#160;</td><td class="fielddoc"><p>e− capture: (Z, e−) -&gt; Z-1 + ν_e </p>
+</td></tr>
+<tr><td class="fieldname"><a id="ae834fb6f8cd1ac922967d5296a25bec7ae0be5539e1cf1c424806baa62540aa9d" name="ae834fb6f8cd1ac922967d5296a25bec7ae0be5539e1cf1c424806baa62540aa9d"></a>POSITRON_CAPTURE&#160;</td><td class="fielddoc"><p>e+ capture: (Z, e+) -&gt; Z+1 + ν̄_e </p>
+</td></tr>
+</table>
+
+</div>
+</div>
+<h2 class="groupheader">Function Documentation</h2>
+<a id="a81f6133710abef28d9d2b030fdbaaeef" name="a81f6133710abef28d9d2b030fdbaaeef"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a81f6133710abef28d9d2b030fdbaaeef">&#9670;&#160;</a></span>weak_reaction_type_name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string_view gridfire::rates::weak::weak_reaction_type_name </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a></td>          <td class="paramname"><span class="paramname"><em>t</em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel constexpr">constexpr</span><span class="mlabel noexcept">noexcept</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Abbreviated channel name used in printing and IDs. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">t</td><td>Channel enum. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Short name: bp, bm, ec, or pc. </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Variable Documentation</h2>
+<a id="a7a262a98e1956c33645bad4eb4e40c7a" name="a7a262a98e1956c33645bad4eb4e40c7a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7a262a98e1956c33645bad4eb4e40c7a">&#9670;&#160;</a></span>InterpolationErrorTypeMap</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;<a class="el" href="#a3fc4243d5c894779b986110c3a1ee1d4">InterpolationErrorType</a>, std::string_view&gt; gridfire::rates::weak::InterpolationErrorTypeMap</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<b>Initial value:</b><div class="fragment"><div class="line">= {</div>
+<div class="line">        {<a class="code hl_enumvalue" href="#a3fc4243d5c894779b986110c3a1ee1d4a1516ba0949425312ba92ea385c80dc7a">InterpolationErrorType::BOUNDS_ERROR</a>, <span class="stringliteral">&quot;Bounds Error&quot;</span>},</div>
+<div class="line">        {<a class="code hl_enumvalue" href="#a3fc4243d5c894779b986110c3a1ee1d4acc038b1c5dbfcede2eaa525fe0e2379d">InterpolationErrorType::UNKNOWN_SPECIES_ERROR</a>, <span class="stringliteral">&quot;Unknown Species Error&quot;</span>},</div>
+<div class="line">        {<a class="code hl_enumvalue" href="#a3fc4243d5c894779b986110c3a1ee1d4a9a10f345b0f755d461a8673a5e9ef6b4">InterpolationErrorType::UNKNOWN_ERROR</a>, <span class="stringliteral">&quot;Unknown Error&quot;</span>}</div>
+<div class="line">    }</div>
+<div class="ttc" id="anamespacegridfire_1_1rates_1_1weak_html_a3fc4243d5c894779b986110c3a1ee1d4a1516ba0949425312ba92ea385c80dc7a"><div class="ttname"><a href="#a3fc4243d5c894779b986110c3a1ee1d4a1516ba0949425312ba92ea385c80dc7a">gridfire::rates::weak::InterpolationErrorType::BOUNDS_ERROR</a></div><div class="ttdeci">@ BOUNDS_ERROR</div><div class="ttdoc">Query outside the per-axis min/max of the table.</div><div class="ttdef"><b>Definition</b> weak_types.h:114</div></div>
+<div class="ttc" id="anamespacegridfire_1_1rates_1_1weak_html_a3fc4243d5c894779b986110c3a1ee1d4a9a10f345b0f755d461a8673a5e9ef6b4"><div class="ttname"><a href="#a3fc4243d5c894779b986110c3a1ee1d4a9a10f345b0f755d461a8673a5e9ef6b4">gridfire::rates::weak::InterpolationErrorType::UNKNOWN_ERROR</a></div><div class="ttdeci">@ UNKNOWN_ERROR</div><div class="ttdef"><b>Definition</b> weak_types.h:116</div></div>
+<div class="ttc" id="anamespacegridfire_1_1rates_1_1weak_html_a3fc4243d5c894779b986110c3a1ee1d4acc038b1c5dbfcede2eaa525fe0e2379d"><div class="ttname"><a href="#a3fc4243d5c894779b986110c3a1ee1d4acc038b1c5dbfcede2eaa525fe0e2379d">gridfire::rates::weak::InterpolationErrorType::UNKNOWN_SPECIES_ERROR</a></div><div class="ttdeci">@ UNKNOWN_SPECIES_ERROR</div><div class="ttdoc">Requested (A,Z) not present in the tables.</div><div class="ttdef"><b>Definition</b> weak_types.h:115</div></div>
+</div><!-- fragment -->
+<p>Human-readable names for <a class="el" href="#a3fc4243d5c894779b986110c3a1ee1d4" title="Error categories for interpolation attempts.">InterpolationErrorType</a>. </p>
+
+</div>
+</div>
+<a id="ac48364695089056d9a9b10689c4338e7" name="ac48364695089056d9a9b10689c4338e7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac48364695089056d9a9b10689c4338e7">&#9670;&#160;</a></span>UNIFIED_WEAK_DATA</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::array&lt;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">RateDataRow</a>, 77400&gt; gridfire::rates::weak::UNIFIED_WEAK_DATA</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel static">static</span><span class="mlabel constexpr">constexpr</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates.html">rates</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">weak</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/namespacegridfire_1_1rates_1_1weak.js b/docs/html/namespacegridfire_1_1rates_1_1weak.js
new file mode 100644
index 00000000..16d815f8
--- /dev/null
+++ b/docs/html/namespacegridfire_1_1rates_1_1weak.js
@@ -0,0 +1,44 @@
+var namespacegridfire_1_1rates_1_1weak =
+[
+    [ "BoundsErrorInfo", "structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html", "structgridfire_1_1rates_1_1weak_1_1_bounds_error_info" ],
+    [ "InterpolationError", "structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html", "structgridfire_1_1rates_1_1weak_1_1_interpolation_error" ],
+    [ "IsotopeGrid", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid" ],
+    [ "RateDataRow", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row" ],
+    [ "WeakRateDerivatives", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives" ],
+    [ "WeakRateInterpolator", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator" ],
+    [ "WeakRatePayload", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload" ],
+    [ "WeakReaction", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction" ],
+    [ "WeakReactionEntry", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry" ],
+    [ "WeakReactionMap", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map" ],
+    [ "InterpolationErrorType", "namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4", [
+      [ "BOUNDS_ERROR", "namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4a1516ba0949425312ba92ea385c80dc7a", null ],
+      [ "UNKNOWN_SPECIES_ERROR", "namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4acc038b1c5dbfcede2eaa525fe0e2379d", null ],
+      [ "UNKNOWN_ERROR", "namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4a9a10f345b0f755d461a8673a5e9ef6b4", null ]
+    ] ],
+    [ "NeutrinoTypes", "namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70ca", [
+      [ "ELECTRON_NEUTRINO", "namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa3fde0fbf2166dfb3dd60458c535699d8", null ],
+      [ "ELECTRON_ANTINEUTRINO", "namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa8d99b7a21c927a7b8274caaf23290de6", null ],
+      [ "MUON_NEUTRINO", "namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caaabd6fefb3f84f632c3968acfcd76d554", null ],
+      [ "MUON_ANTINEUTRINO", "namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caae6f2e17ddd61e72e331faf8700bbedef", null ],
+      [ "TAU_NEUTRINO", "namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa8c2cdafd7125a278e6e0da4c04e29d9e", null ],
+      [ "TAU_ANTINEUTRINO", "namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa2712e9cfc69c4ee0c4ed136338acb6cc", null ]
+    ] ],
+    [ "TableAxes", "namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae", [
+      [ "T9", "namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755", null ],
+      [ "LOG_RHOYE", "namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea1448b5920e7c95f07cbc08d3ba5b9746", null ],
+      [ "MUE", "namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea5257ed2407fcbb45ab05897fdea80c2b", null ]
+    ] ],
+    [ "WeakMapError", "namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550", [
+      [ "SPECIES_NOT_FOUND", "namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550a3659baf2b06bba6c02bad8316d517761", null ],
+      [ "UNKNOWN_ERROR", "namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550a9a10f345b0f755d461a8673a5e9ef6b4", null ]
+    ] ],
+    [ "WeakReactionType", "namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7", [
+      [ "BETA_PLUS_DECAY", "namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a2f146a0cd66e2d010c8802852db26759", null ],
+      [ "BETA_MINUS_DECAY", "namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a12122315f1a94a10826f77a8fd949a94", null ],
+      [ "ELECTRON_CAPTURE", "namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7", null ],
+      [ "POSITRON_CAPTURE", "namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7ae0be5539e1cf1c424806baa62540aa9d", null ]
+    ] ],
+    [ "weak_reaction_type_name", "namespacegridfire_1_1rates_1_1weak.html#a81f6133710abef28d9d2b030fdbaaeef", null ],
+    [ "InterpolationErrorTypeMap", "namespacegridfire_1_1rates_1_1weak.html#a7a262a98e1956c33645bad4eb4e40c7a", null ],
+    [ "UNIFIED_WEAK_DATA", "namespacegridfire_1_1rates_1_1weak.html#ac48364695089056d9a9b10689c4338e7", null ]
+];
\ No newline at end of file
diff --git a/docs/html/namespacegridfire_1_1reaclib.html b/docs/html/namespacegridfire_1_1reaclib.html
index 22b12958..906ed2c8 100644
--- a/docs/html/namespacegridfire_1_1reaclib.html
+++ b/docs/html/namespacegridfire_1_1reaclib.html
@@ -114,9 +114,9 @@ Classes</h2></td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:a91c7971c9d0a2971b9a6fa4d841c761d" id="r_a91c7971c9d0a2971b9a6fa4d841c761d"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a91c7971c9d0a2971b9a6fa4d841c761d">get_all_reactions</a> ()</td></tr>
-<tr class="memdesc:a91c7971c9d0a2971b9a6fa4d841c761d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Provides global access to the fully initialized REACLIB reaction set.  <br /></td></tr>
-<tr class="separator:a91c7971c9d0a2971b9a6fa4d841c761d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5f2326f2f76cb1895d6cf5daed9b030b" id="r_a5f2326f2f76cb1895d6cf5daed9b030b"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5f2326f2f76cb1895d6cf5daed9b030b">get_all_reaclib_reactions</a> ()</td></tr>
+<tr class="memdesc:a5f2326f2f76cb1895d6cf5daed9b030b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Provides global access to the fully initialized REACLIB reaction set.  <br /></td></tr>
+<tr class="separator:a5f2326f2f76cb1895d6cf5daed9b030b"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a6bb94d5adc7bb9db5a67f770f7453e63" id="r_a6bb94d5adc7bb9db5a67f770f7453e63"><td class="memItemLeft" align="right" valign="top">std::ostream &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6bb94d5adc7bb9db5a67f770f7453e63">operator&lt;&lt;</a> (std::ostream &amp;os, const <a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html">ReactionRecord</a> &amp;r)</td></tr>
 <tr class="separator:a6bb94d5adc7bb9db5a67f770f7453e63"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:afc0deac6cbef076e8884e66fd3ab66e0" id="r_afc0deac6cbef076e8884e66fd3ab66e0"><td class="memItemLeft" align="right" valign="top">static std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afc0deac6cbef076e8884e66fd3ab66e0">parseSpeciesString</a> (const std::string_view str)</td></tr>
@@ -128,18 +128,18 @@ Functions</h2></td></tr>
 Variables</h2></td></tr>
 <tr class="memitem:af6ff0dfe7ffe34c73ba9acbab5ef8a66" id="r_af6ff0dfe7ffe34c73ba9acbab5ef8a66"><td class="memItemLeft" align="right" valign="top">static bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af6ff0dfe7ffe34c73ba9acbab5ef8a66">s_initialized</a> = false</td></tr>
 <tr class="separator:af6ff0dfe7ffe34c73ba9acbab5ef8a66"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5dba5efc372d2a9e9e846dfd6563f3c0" id="r_a5dba5efc372d2a9e9e846dfd6563f3c0"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5dba5efc372d2a9e9e846dfd6563f3c0">s_all_reaclib_reactions_ptr</a> = nullptr</td></tr>
-<tr class="separator:a5dba5efc372d2a9e9e846dfd6563f3c0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1f75b17a44c23261a221f7558b1a63d9" id="r_a1f75b17a44c23261a221f7558b1a63d9"><td class="memItemLeft" align="right" valign="top">static std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1f75b17a44c23261a221f7558b1a63d9">s_all_reaclib_reactions_ptr</a> = nullptr</td></tr>
+<tr class="separator:a1f75b17a44c23261a221f7558b1a63d9"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Function Documentation</h2>
-<a id="a91c7971c9d0a2971b9a6fa4d841c761d" name="a91c7971c9d0a2971b9a6fa4d841c761d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a91c7971c9d0a2971b9a6fa4d841c761d">&#9670;&#160;</a></span>get_all_reactions()</h2>
+<a id="a5f2326f2f76cb1895d6cf5daed9b030b" name="a5f2326f2f76cb1895d6cf5daed9b030b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5f2326f2f76cb1895d6cf5daed9b030b">&#9670;&#160;</a></span>get_all_reaclib_reactions()</h2>
 
 <div class="memitem">
 <div class="memproto">
       <table class="memname">
         <tr>
-          <td class="memname">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp; gridfire::reaclib::get_all_reactions </td>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp; gridfire::reaclib::get_all_reaclib_reactions </td>
           <td>(</td>
           <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
           <td></td>
@@ -225,8 +225,8 @@ Variables</h2></td></tr>
 </div>
 </div>
 <h2 class="groupheader">Variable Documentation</h2>
-<a id="a5dba5efc372d2a9e9e846dfd6563f3c0" name="a5dba5efc372d2a9e9e846dfd6563f3c0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5dba5efc372d2a9e9e846dfd6563f3c0">&#9670;&#160;</a></span>s_all_reaclib_reactions_ptr</h2>
+<a id="a1f75b17a44c23261a221f7558b1a63d9" name="a1f75b17a44c23261a221f7558b1a63d9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1f75b17a44c23261a221f7558b1a63d9">&#9670;&#160;</a></span>s_all_reaclib_reactions_ptr</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -235,7 +235,7 @@ Variables</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a>* gridfire::reaclib::s_all_reaclib_reactions_ptr = nullptr</td>
+          <td class="memname">std::unique_ptr&lt;<a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a>&gt; gridfire::reaclib::s_all_reaclib_reactions_ptr = nullptr</td>
         </tr>
       </table>
   </td>
diff --git a/docs/html/namespacegridfire_1_1reaclib.js b/docs/html/namespacegridfire_1_1reaclib.js
index e7b9c0b4..b4dc35e9 100644
--- a/docs/html/namespacegridfire_1_1reaclib.js
+++ b/docs/html/namespacegridfire_1_1reaclib.js
@@ -1,10 +1,10 @@
 var namespacegridfire_1_1reaclib =
 [
     [ "ReactionRecord", "structgridfire_1_1reaclib_1_1_reaction_record.html", "structgridfire_1_1reaclib_1_1_reaction_record" ],
-    [ "get_all_reactions", "namespacegridfire_1_1reaclib.html#a91c7971c9d0a2971b9a6fa4d841c761d", null ],
+    [ "get_all_reaclib_reactions", "namespacegridfire_1_1reaclib.html#a5f2326f2f76cb1895d6cf5daed9b030b", null ],
     [ "initializeAllReaclibReactions", "namespacegridfire_1_1reaclib.html#a02ff11b88be94392151873e06a30b276", null ],
     [ "operator<<", "namespacegridfire_1_1reaclib.html#a6bb94d5adc7bb9db5a67f770f7453e63", null ],
     [ "parseSpeciesString", "namespacegridfire_1_1reaclib.html#afc0deac6cbef076e8884e66fd3ab66e0", null ],
-    [ "s_all_reaclib_reactions_ptr", "namespacegridfire_1_1reaclib.html#a5dba5efc372d2a9e9e846dfd6563f3c0", null ],
+    [ "s_all_reaclib_reactions_ptr", "namespacegridfire_1_1reaclib.html#a1f75b17a44c23261a221f7558b1a63d9", null ],
     [ "s_initialized", "namespacegridfire_1_1reaclib.html#af6ff0dfe7ffe34c73ba9acbab5ef8a66", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/namespacegridfire_1_1reaction.html b/docs/html/namespacegridfire_1_1reaction.html
index 14040521..bf74273f 100644
--- a/docs/html/namespacegridfire_1_1reaction.html
+++ b/docs/html/namespacegridfire_1_1reaction.html
@@ -101,7 +101,7 @@ $(function(){initNavTree('namespacegridfire_1_1reaction.html',''); initResizable
 <div class="header">
   <div class="summary">
 <a href="#nested-classes">Classes</a> &#124;
-<a href="#typedef-members">Typedefs</a> &#124;
+<a href="#enum-members">Enumerations</a> &#124;
 <a href="#func-members">Functions</a>  </div>
   <div class="headertitle"><div class="title">gridfire::reaction Namespace Reference</div></div>
 </div><!--header-->
@@ -109,76 +109,72 @@ $(function(){initNavTree('namespacegridfire_1_1reaction.html',''); initResizable
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
 Classes</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html">LogicalReaction</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Represents a "logical" reaction that aggregates rates from multiple sources.  <a href="classgridfire_1_1reaction_1_1_logical_reaction.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">LogicalReaclibReaction</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Represents a "logical" reaction that aggregates rates from multiple sources.  <a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a></td></tr>
 <tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Holds the seven coefficients for the REACLIB rate equation.  <a href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a></td></tr>
 <tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Represents a single nuclear reaction from a specific data source.  <a href="classgridfire_1_1reaction_1_1_reaction.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html">TemplatedReactionSet</a></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="typedef-members" name="typedef-members"></a>
-Typedefs</h2></td></tr>
-<tr class="memitem:ad838ce3fb6cc02c3fd90b924a0dd91b1" id="r_ad838ce3fb6cc02c3fd90b924a0dd91b1"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad838ce3fb6cc02c3fd90b924a0dd91b1">ReactionSet</a> = <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html">TemplatedReactionSet</a>&lt;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a>&gt;</td></tr>
-<tr class="memdesc:ad838ce3fb6cc02c3fd90b924a0dd91b1"><td class="mdescLeft">&#160;</td><td class="mdescRight">A set of reactions, typically from a single source like REACLIB.  <br /></td></tr>
-<tr class="separator:ad838ce3fb6cc02c3fd90b924a0dd91b1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa86f08712565f278adacc7cd2361eb31" id="r_aa86f08712565f278adacc7cd2361eb31"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa86f08712565f278adacc7cd2361eb31">LogicalReactionSet</a> = <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html">TemplatedReactionSet</a>&lt;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html">LogicalReaction</a>&gt;</td></tr>
-<tr class="memdesc:aa86f08712565f278adacc7cd2361eb31"><td class="mdescLeft">&#160;</td><td class="mdescRight">A set of logical reactions.  <br /></td></tr>
-<tr class="separator:aa86f08712565f278adacc7cd2361eb31"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="enum-members" name="enum-members"></a>
+Enumerations</h2></td></tr>
+<tr class="memitem:a026997f11e811fa7754ac9121c4ba74e" id="r_a026997f11e811fa7754ac9121c4ba74e"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a> { <a class="el" href="#a026997f11e811fa7754ac9121c4ba74ea32c7d8943bec86a6d7d5e03598670ca8">WEAK</a>
+, <a class="el" href="#a026997f11e811fa7754ac9121c4ba74eaf9885ed04411bef7b70f78b643c6a220">REACLIB</a>
+, <a class="el" href="#a026997f11e811fa7754ac9121c4ba74ea32b0fb6c82a2ec42865b2c823216baa9">LOGICAL_REACLIB</a>
+ }</td></tr>
+<tr class="separator:a026997f11e811fa7754ac9121c4ba74e"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:abfcfafc0cda0c3ed56930a12e7ead67f" id="r_abfcfafc0cda0c3ed56930a12e7ead67f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="#aa86f08712565f278adacc7cd2361eb31">LogicalReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abfcfafc0cda0c3ed56930a12e7ead67f">packReactionSetToLogicalReactionSet</a> (const <a class="el" href="#ad838ce3fb6cc02c3fd90b924a0dd91b1">ReactionSet</a> &amp;reactionSet)</td></tr>
-<tr class="separator:abfcfafc0cda0c3ed56930a12e7ead67f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af34403cccdb4a091e979f0f895be2f8c" id="r_af34403cccdb4a091e979f0f895be2f8c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af34403cccdb4a091e979f0f895be2f8c">packReactionSet</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;reactionSet)</td></tr>
+<tr class="separator:af34403cccdb4a091e979f0f895be2f8c"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
-<h2 class="groupheader">Typedef Documentation</h2>
-<a id="aa86f08712565f278adacc7cd2361eb31" name="aa86f08712565f278adacc7cd2361eb31"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa86f08712565f278adacc7cd2361eb31">&#9670;&#160;</a></span>LogicalReactionSet</h2>
+<h2 class="groupheader">Enumeration Type Documentation</h2>
+<a id="a026997f11e811fa7754ac9121c4ba74e" name="a026997f11e811fa7754ac9121c4ba74e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a026997f11e811fa7754ac9121c4ba74e">&#9670;&#160;</a></span>ReactionType</h2>
 
 <div class="memitem">
 <div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">using <a class="el" href="#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a> = <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html">TemplatedReactionSet</a>&lt;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html">LogicalReaction</a>&gt;</td>
+          <td class="memname">enum class <a class="el" href="#a026997f11e811fa7754ac9121c4ba74e">gridfire::reaction::ReactionType</a></td>
         </tr>
       </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel strong">strong</span></span>  </td>
+  </tr>
+</table>
 </div><div class="memdoc">
-
-<p>A set of logical reactions. </p>
-
-</div>
-</div>
-<a id="ad838ce3fb6cc02c3fd90b924a0dd91b1" name="ad838ce3fb6cc02c3fd90b924a0dd91b1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad838ce3fb6cc02c3fd90b924a0dd91b1">&#9670;&#160;</a></span>ReactionSet</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">using <a class="el" href="#ad838ce3fb6cc02c3fd90b924a0dd91b1">gridfire::reaction::ReactionSet</a> = <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html">TemplatedReactionSet</a>&lt;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a>&gt;</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>A set of reactions, typically from a single source like REACLIB. </p>
+<table class="fieldtable">
+<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="a026997f11e811fa7754ac9121c4ba74ea32c7d8943bec86a6d7d5e03598670ca8" name="a026997f11e811fa7754ac9121c4ba74ea32c7d8943bec86a6d7d5e03598670ca8"></a>WEAK&#160;</td><td class="fielddoc"></td></tr>
+<tr><td class="fieldname"><a id="a026997f11e811fa7754ac9121c4ba74eaf9885ed04411bef7b70f78b643c6a220" name="a026997f11e811fa7754ac9121c4ba74eaf9885ed04411bef7b70f78b643c6a220"></a>REACLIB&#160;</td><td class="fielddoc"></td></tr>
+<tr><td class="fieldname"><a id="a026997f11e811fa7754ac9121c4ba74ea32b0fb6c82a2ec42865b2c823216baa9" name="a026997f11e811fa7754ac9121c4ba74ea32b0fb6c82a2ec42865b2c823216baa9"></a>LOGICAL_REACLIB&#160;</td><td class="fielddoc"></td></tr>
+</table>
 
 </div>
 </div>
 <h2 class="groupheader">Function Documentation</h2>
-<a id="abfcfafc0cda0c3ed56930a12e7ead67f" name="abfcfafc0cda0c3ed56930a12e7ead67f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abfcfafc0cda0c3ed56930a12e7ead67f">&#9670;&#160;</a></span>packReactionSetToLogicalReactionSet()</h2>
+<a id="af34403cccdb4a091e979f0f895be2f8c" name="af34403cccdb4a091e979f0f895be2f8c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af34403cccdb4a091e979f0f895be2f8c">&#9670;&#160;</a></span>packReactionSet()</h2>
 
 <div class="memitem">
 <div class="memproto">
       <table class="memname">
         <tr>
-          <td class="memname"><a class="el" href="#aa86f08712565f278adacc7cd2361eb31">LogicalReactionSet</a> gridfire::reaction::packReactionSetToLogicalReactionSet </td>
+          <td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> gridfire::reaction::packReactionSet </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="#ad838ce3fb6cc02c3fd90b924a0dd91b1">ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactionSet</em></span></td><td>)</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactionSet</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
diff --git a/docs/html/namespacegridfire_1_1reaction.js b/docs/html/namespacegridfire_1_1reaction.js
index cb6436cd..9fda34e4 100644
--- a/docs/html/namespacegridfire_1_1reaction.js
+++ b/docs/html/namespacegridfire_1_1reaction.js
@@ -1,10 +1,14 @@
 var namespacegridfire_1_1reaction =
 [
-    [ "LogicalReaction", "classgridfire_1_1reaction_1_1_logical_reaction.html", "classgridfire_1_1reaction_1_1_logical_reaction" ],
+    [ "LogicalReaclibReaction", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction" ],
     [ "RateCoefficientSet", "structgridfire_1_1reaction_1_1_rate_coefficient_set.html", "structgridfire_1_1reaction_1_1_rate_coefficient_set" ],
+    [ "ReaclibReaction", "classgridfire_1_1reaction_1_1_reaclib_reaction.html", "classgridfire_1_1reaction_1_1_reaclib_reaction" ],
     [ "Reaction", "classgridfire_1_1reaction_1_1_reaction.html", "classgridfire_1_1reaction_1_1_reaction" ],
-    [ "TemplatedReactionSet", "classgridfire_1_1reaction_1_1_templated_reaction_set.html", "classgridfire_1_1reaction_1_1_templated_reaction_set" ],
-    [ "LogicalReactionSet", "namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31", null ],
-    [ "ReactionSet", "namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1", null ],
-    [ "packReactionSetToLogicalReactionSet", "namespacegridfire_1_1reaction.html#abfcfafc0cda0c3ed56930a12e7ead67f", null ]
+    [ "ReactionSet", "classgridfire_1_1reaction_1_1_reaction_set.html", "classgridfire_1_1reaction_1_1_reaction_set" ],
+    [ "ReactionType", "namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e", [
+      [ "WEAK", "namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74ea32c7d8943bec86a6d7d5e03598670ca8", null ],
+      [ "REACLIB", "namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74eaf9885ed04411bef7b70f78b643c6a220", null ],
+      [ "LOGICAL_REACLIB", "namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74ea32b0fb6c82a2ec42865b2c823216baa9", null ]
+    ] ],
+    [ "packReactionSet", "namespacegridfire_1_1reaction.html#af34403cccdb4a091e979f0f895be2f8c", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/namespacegridfire_1_1screening.html b/docs/html/namespacegridfire_1_1screening.html
index e910fb71..81edac8f 100644
--- a/docs/html/namespacegridfire_1_1screening.html
+++ b/docs/html/namespacegridfire_1_1screening.html
@@ -113,6 +113,8 @@ Classes</h2></td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">BareScreeningModel</a></td></tr>
 <tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A screening model that applies no screening effect.  <a href="classgridfire_1_1screening_1_1_bare_screening_model.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html">IntermediateScreeningModel</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">ScreeningModel</a></td></tr>
 <tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">An abstract base class for plasma screening models.  <a href="classgridfire_1_1screening_1_1_screening_model.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
diff --git a/docs/html/namespacegridfire_1_1screening.js b/docs/html/namespacegridfire_1_1screening.js
index 1664267f..9d6ee93e 100644
--- a/docs/html/namespacegridfire_1_1screening.js
+++ b/docs/html/namespacegridfire_1_1screening.js
@@ -1,6 +1,7 @@
 var namespacegridfire_1_1screening =
 [
     [ "BareScreeningModel", "classgridfire_1_1screening_1_1_bare_screening_model.html", "classgridfire_1_1screening_1_1_bare_screening_model" ],
+    [ "IntermediateScreeningModel", "classgridfire_1_1screening_1_1_intermediate_screening_model.html", "classgridfire_1_1screening_1_1_intermediate_screening_model" ],
     [ "ScreeningModel", "classgridfire_1_1screening_1_1_screening_model.html", "classgridfire_1_1screening_1_1_screening_model" ],
     [ "WeakScreeningModel", "classgridfire_1_1screening_1_1_weak_screening_model.html", "classgridfire_1_1screening_1_1_weak_screening_model" ],
     [ "ADDouble", "namespacegridfire_1_1screening.html#ae7dd1a7ccb7bf3c05084094ab008d8a3", null ],
diff --git a/docs/html/namespacegridfire_1_1solver.html b/docs/html/namespacegridfire_1_1solver.html
index 95b8d73f..87a63e21 100644
--- a/docs/html/namespacegridfire_1_1solver.html
+++ b/docs/html/namespacegridfire_1_1solver.html
@@ -108,8 +108,8 @@ $(function(){initNavTree('namespacegridfire_1_1solver.html',''); initResizable(t
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
 Classes</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html">DirectNetworkSolver</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A network solver that directly integrates the reaction network ODEs.  <a href="classgridfire_1_1solver_1_1_direct_network_solver.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stiff ODE integrator backed by SUNDIALS CVODE (BDF) for network + energy.  <a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">NetworkSolverStrategy</a></td></tr>
 <tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Abstract base class for network solver strategies.  <a href="classgridfire_1_1solver_1_1_network_solver_strategy.html#details">More...</a><br /></td></tr>
diff --git a/docs/html/namespacegridfire_1_1solver.js b/docs/html/namespacegridfire_1_1solver.js
index 73b9f048..a0e531e6 100644
--- a/docs/html/namespacegridfire_1_1solver.js
+++ b/docs/html/namespacegridfire_1_1solver.js
@@ -1,6 +1,6 @@
 var namespacegridfire_1_1solver =
 [
-    [ "DirectNetworkSolver", "classgridfire_1_1solver_1_1_direct_network_solver.html", "classgridfire_1_1solver_1_1_direct_network_solver" ],
+    [ "CVODESolverStrategy", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy" ],
     [ "NetworkSolverStrategy", "classgridfire_1_1solver_1_1_network_solver_strategy.html", "classgridfire_1_1solver_1_1_network_solver_strategy" ],
     [ "SolverContextBase", "structgridfire_1_1solver_1_1_solver_context_base.html", "structgridfire_1_1solver_1_1_solver_context_base" ],
     [ "DynamicNetworkSolverStrategy", "namespacegridfire_1_1solver.html#a8118d08bc25e439754b43a3f5ecc1db3", null ]
diff --git a/docs/html/namespacegridfire_1_1trigger.html b/docs/html/namespacegridfire_1_1trigger.html
new file mode 100644
index 00000000..82fc648e
--- /dev/null
+++ b/docs/html/namespacegridfire_1_1trigger.html
@@ -0,0 +1,200 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::trigger Namespace Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('namespacegridfire_1_1trigger.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#namespaces">Namespaces</a> &#124;
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#func-members">Functions</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger Namespace Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger_1_1solver.html">solver</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">AndTrigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logical conjunction of two triggers with short-circuit evaluation.  <a href="classgridfire_1_1trigger_1_1_and_trigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">EveryNthTrigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pass-through trigger that fires every Nth time its child trigger is true.  <a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_logical_trigger.html">LogicalTrigger</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">NotTrigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logical negation of a trigger.  <a href="classgridfire_1_1trigger_1_1_not_trigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">OrTrigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logical disjunction of two triggers with short-circuit evaluation.  <a href="classgridfire_1_1trigger_1_1_or_trigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generic trigger interface for signaling events/conditions during integration.  <a href="classgridfire_1_1trigger_1_1_trigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:a5e0fe21f3356426f26b109cdeb1edcd9" id="r_a5e0fe21f3356426f26b109cdeb1edcd9"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5e0fe21f3356426f26b109cdeb1edcd9">printWhy</a> (const <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> &amp;result, const int indent=0)</td></tr>
+<tr class="memdesc:a5e0fe21f3356426f26b109cdeb1edcd9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pretty-print a <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> explanation tree to std::cout.  <br /></td></tr>
+<tr class="separator:a5e0fe21f3356426f26b109cdeb1edcd9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Function Documentation</h2>
+<a id="a5e0fe21f3356426f26b109cdeb1edcd9" name="a5e0fe21f3356426f26b109cdeb1edcd9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5e0fe21f3356426f26b109cdeb1edcd9">&#9670;&#160;</a></span>printWhy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::printWhy </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>result</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>indent</em></span><span class="paramdefsep"> = </span><span class="paramdefval">0</span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Pretty-print a <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> explanation tree to std::cout. </p>
+<p>Prints one line per node prefixed with Unicode bullets and indentation to visualize the explanation hierarchy. Each line shows [TRUE|FALSE], the node name, and description.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">result</td><td>Root <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> to print. </td></tr>
+    <tr><td class="paramname">indent</td><td>Current indentation level (number of two-space indents); callers typically omit this parameter and let recursion handle it.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">using </span><a class="code hl_struct" href="structgridfire_1_1trigger_1_1_trigger_result.html">gridfire::trigger::TriggerResult</a>;</div>
+<div class="line"><a class="code hl_struct" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> leaf{<span class="stringliteral">&quot;A&gt;5&quot;</span>, <span class="stringliteral">&quot;Threshold passed&quot;</span>, <span class="keyword">true</span>, {}};</div>
+<div class="line">TriggerResult root{<span class="stringliteral">&quot;AND&quot;</span>, <span class="stringliteral">&quot;Both conditions true&quot;</span>, <span class="keyword">true</span>, {leaf}};</div>
+<div class="line"><a class="code hl_function" href="#a5e0fe21f3356426f26b109cdeb1edcd9">gridfire::trigger::printWhy</a>(root);</div>
+<div class="ttc" id="anamespacegridfire_1_1trigger_html_a5e0fe21f3356426f26b109cdeb1edcd9"><div class="ttname"><a href="#a5e0fe21f3356426f26b109cdeb1edcd9">gridfire::trigger::printWhy</a></div><div class="ttdeci">void printWhy(const TriggerResult &amp;result, const int indent=0)</div><div class="ttdoc">Pretty-print a TriggerResult explanation tree to std::cout.</div><div class="ttdef"><b>Definition</b> trigger_pprint.h:26</div></div>
+<div class="ttc" id="astructgridfire_1_1trigger_1_1_trigger_result_html"><div class="ttname"><a href="structgridfire_1_1trigger_1_1_trigger_result.html">gridfire::trigger::TriggerResult</a></div><div class="ttdef"><b>Definition</b> trigger_result.h:23</div></div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/namespacegridfire_1_1trigger.js b/docs/html/namespacegridfire_1_1trigger.js
new file mode 100644
index 00000000..e5dcc177
--- /dev/null
+++ b/docs/html/namespacegridfire_1_1trigger.js
@@ -0,0 +1,12 @@
+var namespacegridfire_1_1trigger =
+[
+    [ "solver", "namespacegridfire_1_1trigger_1_1solver.html", "namespacegridfire_1_1trigger_1_1solver" ],
+    [ "AndTrigger", "classgridfire_1_1trigger_1_1_and_trigger.html", "classgridfire_1_1trigger_1_1_and_trigger" ],
+    [ "EveryNthTrigger", "classgridfire_1_1trigger_1_1_every_nth_trigger.html", "classgridfire_1_1trigger_1_1_every_nth_trigger" ],
+    [ "LogicalTrigger", "classgridfire_1_1trigger_1_1_logical_trigger.html", null ],
+    [ "NotTrigger", "classgridfire_1_1trigger_1_1_not_trigger.html", "classgridfire_1_1trigger_1_1_not_trigger" ],
+    [ "OrTrigger", "classgridfire_1_1trigger_1_1_or_trigger.html", "classgridfire_1_1trigger_1_1_or_trigger" ],
+    [ "Trigger", "classgridfire_1_1trigger_1_1_trigger.html", "classgridfire_1_1trigger_1_1_trigger" ],
+    [ "TriggerResult", "structgridfire_1_1trigger_1_1_trigger_result.html", "structgridfire_1_1trigger_1_1_trigger_result" ],
+    [ "printWhy", "namespacegridfire_1_1trigger.html#a5e0fe21f3356426f26b109cdeb1edcd9", null ]
+];
\ No newline at end of file
diff --git a/docs/html/namespacegridfire_1_1trigger_1_1solver.html b/docs/html/namespacegridfire_1_1trigger_1_1solver.html
new file mode 100644
index 00000000..0e4d0609
--- /dev/null
+++ b/docs/html/namespacegridfire_1_1trigger_1_1solver.html
@@ -0,0 +1,123 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::trigger::solver Namespace Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('namespacegridfire_1_1trigger_1_1solver.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#namespaces">Namespaces</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::solver Namespace Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">CVODE</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger_1_1solver.html">solver</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/namespacegridfire_1_1trigger_1_1solver.js b/docs/html/namespacegridfire_1_1trigger_1_1solver.js
new file mode 100644
index 00000000..8ae86c9c
--- /dev/null
+++ b/docs/html/namespacegridfire_1_1trigger_1_1solver.js
@@ -0,0 +1,4 @@
+var namespacegridfire_1_1trigger_1_1solver =
+[
+    [ "CVODE", "namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html", "namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e" ]
+];
\ No newline at end of file
diff --git a/docs/html/namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html b/docs/html/namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html
new file mode 100644
index 00000000..1e7592f2
--- /dev/null
+++ b/docs/html/namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html
@@ -0,0 +1,193 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::trigger::solver::CVODE Namespace Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#func-members">Functions</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::solver::CVODE Namespace Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">OffDiagonalTrigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Triggers when any off-diagonal Jacobian entry magnitude exceeds a threshold.  <a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">SimulationTimeTrigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Triggers when the current simulation time advances by at least a fixed interval.  <a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">TimestepCollapseTrigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Triggers when the timestep deviates from its recent average beyond a threshold.  <a href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:a26555ea09be620dabc5f9644be8f9908" id="r_a26555ea09be620dabc5f9644be8f9908"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a26555ea09be620dabc5f9644be8f9908">makeEnginePartitioningTrigger</a> (const double simulationTimeInterval, const double offDiagonalThreshold, const double timestepGrowthThreshold, const bool timestepGrowthRelative, const size_t timestepGrowthWindowSize)</td></tr>
+<tr class="memdesc:a26555ea09be620dabc5f9644be8f9908"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compose a trigger suitable for deciding engine re-partitioning during <a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">CVODE</a> solves.  <br /></td></tr>
+<tr class="separator:a26555ea09be620dabc5f9644be8f9908"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Function Documentation</h2>
+<a id="a26555ea09be620dabc5f9644be8f9908" name="a26555ea09be620dabc5f9644be8f9908"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a26555ea09be620dabc5f9644be8f9908">&#9670;&#160;</a></span>makeEnginePartitioningTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a>&lt; <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &gt; &gt; gridfire::trigger::solver::CVODE::makeEnginePartitioningTrigger </td>
+          <td>(</td>
+          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>simulationTimeInterval</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>offDiagonalThreshold</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>timestepGrowthThreshold</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const bool</td>          <td class="paramname"><span class="paramname"><em>timestepGrowthRelative</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const size_t</td>          <td class="paramname"><span class="paramname"><em>timestepGrowthWindowSize</em></span>&#160;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Compose a trigger suitable for deciding engine re-partitioning during <a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">CVODE</a> solves. </p>
+<p>Policy (as of implementation):</p><ul>
+<li>OR of the following three conditions: 1) Every 1000th firing of SimulationTimeTrigger(simulationTimeInterval) 2) OffDiagonalTrigger(offDiagonalThreshold) 3) Every 10th firing of TimestepCollapseTrigger(timestepGrowthThreshold,
+      timestepGrowthRelative, timestepGrowthWindowSize)</li>
+</ul>
+<p>See <a class="el" href="engine__partitioning__trigger_8cpp.html">engine_partitioning_trigger.cpp</a> for construction details using <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html" title="Logical disjunction of two triggers with short-circuit evaluation.">OrTrigger</a> and <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html" title="Pass-through trigger that fires every Nth time its child trigger is true.">EveryNthTrigger</a> from <a class="el" href="trigger__logical_8h.html" title="Combinators for composing triggers with boolean logic (AND/OR/NOT/EveryNth).">trigger_logical.h</a>.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">simulationTimeInterval</td><td>Interval used by <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html" title="Triggers when the current simulation time advances by at least a fixed interval.">SimulationTimeTrigger</a> (&gt; 0). </td></tr>
+    <tr><td class="paramname">offDiagonalThreshold</td><td>Off-diagonal Jacobian magnitude threshold (&gt;= 0). </td></tr>
+    <tr><td class="paramname">timestepGrowthThreshold</td><td>Threshold for timestep deviation (&gt;= 0, and &lt;= 1 when relative). </td></tr>
+    <tr><td class="paramname">timestepGrowthRelative</td><td>Whether deviation is measured relatively. </td></tr>
+    <tr><td class="paramname">timestepGrowthWindowSize</td><td>Window size for timestep averaging (&gt;= 1 recommended). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A unique_ptr to a composed <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html" title="Generic trigger interface for signaling events/conditions during integration.">Trigger&lt;TimestepContext&gt;</a> implementing the policy above.</dd></dl>
+<dl class="section note"><dt>Note</dt><dd>The exact policy is subject to change; this function centralizes that decision. </dd></dl>
+
+</div>
+</div>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger_1_1solver.html">solver</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">CVODE</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.js b/docs/html/namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.js
new file mode 100644
index 00000000..16cbe012
--- /dev/null
+++ b/docs/html/namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.js
@@ -0,0 +1,7 @@
+var namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e =
+[
+    [ "OffDiagonalTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger" ],
+    [ "SimulationTimeTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger" ],
+    [ "TimestepCollapseTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger" ],
+    [ "makeEnginePartitioningTrigger", "namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html#a26555ea09be620dabc5f9644be8f9908", null ]
+];
\ No newline at end of file
diff --git a/docs/html/namespacegridfire_1_1utils.html b/docs/html/namespacegridfire_1_1utils.html
index 1da5ecf5..2bfdf883 100644
--- a/docs/html/namespacegridfire_1_1utils.html
+++ b/docs/html/namespacegridfire_1_1utils.html
@@ -100,20 +100,59 @@ $(function(){initNavTree('namespacegridfire_1_1utils.html',''); initResizable(tr
 
 <div class="header">
   <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
 <a href="#func-members">Functions</a>  </div>
   <div class="headertitle"><div class="title">gridfire::utils Namespace Reference</div></div>
 </div><!--header-->
 <div class="contents">
 <table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1utils_1_1_column.html">Column</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1utils_1_1_column_base.html">ColumnBase</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:af56693a70d9e2b40c8ae2c3bcd4b26c8" id="r_af56693a70d9e2b40c8ae2c3bcd4b26c8"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af56693a70d9e2b40c8ae2c3bcd4b26c8">formatNuclearTimescaleLogString</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho)</td></tr>
-<tr class="memdesc:af56693a70d9e2b40c8ae2c3bcd4b26c8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Formats a map of nuclear species timescales into a human-readable string.  <br /></td></tr>
-<tr class="separator:af56693a70d9e2b40c8ae2c3bcd4b26c8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a05fda32d3fc4ab10060b8c4c251c2f3d" id="r_a05fda32d3fc4ab10060b8c4c251c2f3d"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a05fda32d3fc4ab10060b8c4c251c2f3d">formatNuclearTimescaleLogString</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const fourdst::composition::Composition &amp;composition, double T9, double rho)</td></tr>
+<tr class="memdesc:a05fda32d3fc4ab10060b8c4c251c2f3d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Formats a map of nuclear species timescales into a human-readable string.  <br /></td></tr>
+<tr class="separator:a05fda32d3fc4ab10060b8c4c251c2f3d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6451ba6762273b91a8281043cfaa5d2a" id="r_a6451ba6762273b91a8281043cfaa5d2a"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6451ba6762273b91a8281043cfaa5d2a">format_table</a> (const std::string &amp;tableName, const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1utils_1_1_column_base.html">ColumnBase</a> &gt; &gt; &amp;columns)</td></tr>
+<tr class="separator:a6451ba6762273b91a8281043cfaa5d2a"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Function Documentation</h2>
-<a id="af56693a70d9e2b40c8ae2c3bcd4b26c8" name="af56693a70d9e2b40c8ae2c3bcd4b26c8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af56693a70d9e2b40c8ae2c3bcd4b26c8">&#9670;&#160;</a></span>formatNuclearTimescaleLogString()</h2>
+<a id="a6451ba6762273b91a8281043cfaa5d2a" name="a6451ba6762273b91a8281043cfaa5d2a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6451ba6762273b91a8281043cfaa5d2a">&#9670;&#160;</a></span>format_table()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::utils::format_table </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;</td>          <td class="paramname"><span class="paramname"><em>tableName</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1utils_1_1_column_base.html">ColumnBase</a> &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>columns</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a05fda32d3fc4ab10060b8c4c251c2f3d" name="a05fda32d3fc4ab10060b8c4c251c2f3d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a05fda32d3fc4ab10060b8c4c251c2f3d">&#9670;&#160;</a></span>formatNuclearTimescaleLogString()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -126,17 +165,17 @@ Functions</h2></td></tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>composition</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;)</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;)</td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -168,7 +207,7 @@ Functions</h2></td></tr>
 <li>The final string, including header and footer lines, is returned.</li>
 </ol>
 <p><b>Usage</b> </p><div class="fragment"><div class="line"><span class="comment">// Assume &#39;my_engine&#39; is a valid DynamicEngine object and Y, T9, rho are initialized.</span></div>
-<div class="line">std::string log_output = <a class="code hl_function" href="#af56693a70d9e2b40c8ae2c3bcd4b26c8">gridfire::utils::formatNuclearTimescaleLogString</a>(my_engine, Y, T9, rho);</div>
+<div class="line">std::string log_output = <a class="code hl_function" href="#a05fda32d3fc4ab10060b8c4c251c2f3d">gridfire::utils::formatNuclearTimescaleLogString</a>(my_engine, Y, T9, rho);</div>
 <div class="line">std::cout &lt;&lt; log_output;</div>
 <div class="line"> </div>
 <div class="line"><span class="comment">// Example Output:</span></div>
@@ -179,7 +218,7 @@ Functions</h2></td></tr>
 <div class="line"><span class="comment">// he4          inf</span></div>
 <div class="line"><span class="comment">// c12          8.765e-02</span></div>
 <div class="line"><span class="comment">// ==========================</span></div>
-<div class="ttc" id="anamespacegridfire_1_1utils_html_af56693a70d9e2b40c8ae2c3bcd4b26c8"><div class="ttname"><a href="#af56693a70d9e2b40c8ae2c3bcd4b26c8">gridfire::utils::formatNuclearTimescaleLogString</a></div><div class="ttdeci">std::string formatNuclearTimescaleLogString(const DynamicEngine &amp;engine, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho)</div><div class="ttdoc">Formats a map of nuclear species timescales into a human-readable string.</div><div class="ttdef"><b>Definition</b> logging.cpp:13</div></div>
+<div class="ttc" id="anamespacegridfire_1_1utils_html_a05fda32d3fc4ab10060b8c4c251c2f3d"><div class="ttname"><a href="#a05fda32d3fc4ab10060b8c4c251c2f3d">gridfire::utils::formatNuclearTimescaleLogString</a></div><div class="ttdeci">std::string formatNuclearTimescaleLogString(const DynamicEngine &amp;engine, const fourdst::composition::Composition &amp;composition, double T9, double rho)</div><div class="ttdoc">Formats a map of nuclear species timescales into a human-readable string.</div><div class="ttdef"><b>Definition</b> logging.cpp:12</div></div>
 </div><!-- fragment --> 
 </div>
 </div>
diff --git a/docs/html/namespacegridfire_1_1utils.js b/docs/html/namespacegridfire_1_1utils.js
new file mode 100644
index 00000000..900f8335
--- /dev/null
+++ b/docs/html/namespacegridfire_1_1utils.js
@@ -0,0 +1,7 @@
+var namespacegridfire_1_1utils =
+[
+    [ "Column", "classgridfire_1_1utils_1_1_column.html", "classgridfire_1_1utils_1_1_column" ],
+    [ "ColumnBase", "classgridfire_1_1utils_1_1_column_base.html", "classgridfire_1_1utils_1_1_column_base" ],
+    [ "format_table", "namespacegridfire_1_1utils.html#a6451ba6762273b91a8281043cfaa5d2a", null ],
+    [ "formatNuclearTimescaleLogString", "namespacegridfire_1_1utils.html#a05fda32d3fc4ab10060b8c4c251c2f3d", null ]
+];
\ No newline at end of file
diff --git a/docs/html/namespacemembers.html b/docs/html/namespacemembers.html
index 00126c2a..a6e61f70 100644
--- a/docs/html/namespacemembers.html
+++ b/docs/html/namespacemembers.html
@@ -110,7 +110,8 @@ $(function(){initNavTree('namespacemembers.html',''); initResizable(true); });
 <h3><a id="index_b" name="index_b"></a>- b -</h3><ul>
 <li>BasePartitionType&#160;:&#160;<a class="el" href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728c">gridfire::partition</a></li>
 <li>basePartitionTypeToString&#160;:&#160;<a class="el" href="namespacegridfire_1_1partition.html#a97237521bc760f7521346f8db472dc8e">gridfire::partition</a></li>
-<li>build_reaclib_nuclear_network()&#160;:&#160;<a class="el" href="namespacegridfire.html#aedddb89e400a6111f69bfe0c3fd4214e">gridfire</a></li>
+<li>build_nuclear_network()&#160;:&#160;<a class="el" href="namespacegridfire.html#a58a036e8883e75a8abd3e18798563f71">gridfire</a></li>
+<li>build_reaclib_nuclear_network()&#160;:&#160;<a class="el" href="namespacegridfire.html#a384323338f13166d87c7ac047434bd38">gridfire</a></li>
 <li>BuildDepthType&#160;:&#160;<a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">gridfire</a></li>
 </ul>
 
@@ -120,8 +121,8 @@ $(function(){initNavTree('namespacemembers.html',''); initResizable(true); });
 <li>c12c12_rate()&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#a70eb18e9706ac28a308dcb4fcec7421f">gridfire::approx8</a></li>
 <li>c12o16_rate()&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#a8c30b7e6099c5fc2aa94f9c68fd075dc">gridfire::approx8</a></li>
 <li>c12p_rate()&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#a890ad24c2cdb15fb76a3ff8a7b8d77db">gridfire::approx8</a></li>
-<li>calculateCreationRate()&#160;:&#160;<a class="el" href="namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d">gridfire</a></li>
-<li>calculateDestructionRateConstant()&#160;:&#160;<a class="el" href="namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2">gridfire</a></li>
+<li>calculateCreationRate()&#160;:&#160;<a class="el" href="namespacegridfire.html#a8995b949592d59850e45a3fd27306369">gridfire</a></li>
+<li>calculateDestructionRateConstant()&#160;:&#160;<a class="el" href="namespacegridfire.html#ab6e14208fad69f4031411a9346c12397">gridfire</a></li>
 </ul>
 
 
@@ -137,14 +138,15 @@ $(function(){initNavTree('namespacemembers.html',''); initResizable(true); });
 
 
 <h3><a id="index_f" name="index_f"></a>- f -</h3><ul>
-<li>findDominantCreationChannel()&#160;:&#160;<a class="el" href="namespacegridfire.html#aefc63ddbfe97dcb4178c94dfd1c4b256">gridfire</a></li>
-<li>formatNuclearTimescaleLogString()&#160;:&#160;<a class="el" href="namespacegridfire_1_1utils.html#af56693a70d9e2b40c8ae2c3bcd4b26c8">gridfire::utils</a></li>
+<li>findDominantCreationChannel()&#160;:&#160;<a class="el" href="namespacegridfire.html#a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f">gridfire</a></li>
+<li>format_table()&#160;:&#160;<a class="el" href="namespacegridfire_1_1utils.html#a6451ba6762273b91a8281043cfaa5d2a">gridfire::utils</a></li>
+<li>formatNuclearTimescaleLogString()&#160;:&#160;<a class="el" href="namespacegridfire_1_1utils.html#a05fda32d3fc4ab10060b8c4c251c2f3d">gridfire::utils</a></li>
 <li>FormatStringLookup&#160;:&#160;<a class="el" href="namespacegridfire.html#a4e9cabad30b57d636c2f0d73d8cc6bb4">gridfire</a></li>
 </ul>
 
 
 <h3><a id="index_g" name="index_g"></a>- g -</h3><ul>
-<li>get_all_reactions()&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaclib.html#a91c7971c9d0a2971b9a6fa4d841c761d">gridfire::reaclib</a></li>
+<li>get_all_reaclib_reactions()&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaclib.html#a5f2326f2f76cb1895d6cf5daed9b030b">gridfire::reaclib</a></li>
 <li>get_T9_array()&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#a20f9c48e60a5abf0b6868d1d05080222">gridfire::approx8</a></li>
 <li>GroundState&#160;:&#160;<a class="el" href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335">gridfire::partition</a></li>
 </ul>
@@ -158,15 +160,15 @@ $(function(){initNavTree('namespacemembers.html',''); initResizable(true); });
 
 <h3><a id="index_i" name="index_i"></a>- i -</h3><ul>
 <li>initializeAllReaclibReactions()&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaclib.html#a02ff11b88be94392151873e06a30b276">gridfire::reaclib</a></li>
-</ul>
-
-
-<h3><a id="index_l" name="index_l"></a>- l -</h3><ul>
-<li>LogicalReactionSet&#160;:&#160;<a class="el" href="namespacegridfire.html#aa86f08712565f278adacc7cd2361eb31">gridfire</a>, <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction</a></li>
+<li>inspect_jacobian_stiffness()&#160;:&#160;<a class="el" href="namespacegridfire_1_1diagnostics.html#a066ee899bd259062716f25abae3890b0">gridfire::diagnostics</a></li>
+<li>inspect_species_balance()&#160;:&#160;<a class="el" href="namespacegridfire_1_1diagnostics.html#a11c0d538e7244bee168d7f9217442128">gridfire::diagnostics</a></li>
+<li>InterpolationErrorType&#160;:&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4">gridfire::rates::weak</a></li>
+<li>InterpolationErrorTypeMap&#160;:&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a7a262a98e1956c33645bad4eb4e40c7a">gridfire::rates::weak</a></li>
 </ul>
 
 
 <h3><a id="index_m" name="index_m"></a>- m -</h3><ul>
+<li>makeEnginePartitioningTrigger()&#160;:&#160;<a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html#a26555ea09be620dabc5f9644be8f9908">gridfire::trigger::solver::CVODE</a></li>
 <li>matrix_type&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#a275aecf94e3145c2ff3d1756deda54ce">gridfire::approx8</a></li>
 <li>MIN_ABUNDANCE_THRESHOLD&#160;:&#160;<a class="el" href="namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06">gridfire</a></li>
 <li>MIN_DENSITY_THRESHOLD&#160;:&#160;<a class="el" href="namespacegridfire.html#ada3c137c014ecd8d06200fea2d1a9f50">gridfire</a></li>
@@ -183,6 +185,7 @@ $(function(){initNavTree('namespacemembers.html',''); initResizable(true); });
 <li>ne20a_rate()&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#ad7a6f894fa4bdeebb4cae0eba3b2c210">gridfire::approx8</a></li>
 <li>NetworkBuildDepth&#160;:&#160;<a class="el" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57">gridfire</a></li>
 <li>NetworkFormat&#160;:&#160;<a class="el" href="namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37">gridfire</a></li>
+<li>NeutrinoTypes&#160;:&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70ca">gridfire::rates::weak</a></li>
 </ul>
 
 
@@ -194,13 +197,14 @@ $(function(){initNavTree('namespacemembers.html',''); initResizable(true); });
 
 
 <h3><a id="index_p" name="index_p"></a>- p -</h3><ul>
-<li>packReactionSetToLogicalReactionSet()&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaction.html#abfcfafc0cda0c3ed56930a12e7ead67f">gridfire::reaction</a></li>
+<li>packReactionSet()&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaction.html#af34403cccdb4a091e979f0f895be2f8c">gridfire::reaction</a></li>
 <li>ParsedNetworkData&#160;:&#160;<a class="el" href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">gridfire::io</a></li>
 <li>parseSpeciesString()&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaclib.html#afc0deac6cbef076e8884e66fd3ab66e0">gridfire::reaclib</a></li>
 <li>pp_rate()&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#a16739298c01e56967ce784a9a957439f">gridfire::approx8</a></li>
-<li>primeNetwork()&#160;:&#160;<a class="el" href="namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f">gridfire</a></li>
+<li>primeNetwork()&#160;:&#160;<a class="el" href="namespacegridfire.html#a3cd451f4b7a7bc7c2d7007ebb343e9ac">gridfire</a></li>
 <li>PrimingReportStatus&#160;:&#160;<a class="el" href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154">gridfire</a></li>
 <li>PrimingReportStatusStrings&#160;:&#160;<a class="el" href="namespacegridfire.html#a02be158966bf82a91b159b7a962c3fa5">gridfire</a></li>
+<li>printWhy()&#160;:&#160;<a class="el" href="namespacegridfire_1_1trigger.html#a5e0fe21f3356426f26b109cdeb1edcd9">gridfire::trigger</a></li>
 </ul>
 
 
@@ -208,15 +212,15 @@ $(function(){initNavTree('namespacemembers.html',''); initResizable(true); });
 <li>rate_fit()&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#aed8175751b4920a53922f87f8c0e63c4">gridfire::approx8</a></li>
 <li>RauscherThielemann&#160;:&#160;<a class="el" href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728ca4ca5b5dcd7343b06b860f05f3bc454b1">gridfire::partition</a></li>
 <li>REACLIB&#160;:&#160;<a class="el" href="namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182">gridfire</a></li>
-<li>ReactionSet&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1">gridfire::reaction</a>, <a class="el" href="namespacegridfire.html#ad838ce3fb6cc02c3fd90b924a0dd91b1">gridfire</a></li>
+<li>ReactionType&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">gridfire::reaction</a></li>
+<li>report_limiting_species()&#160;:&#160;<a class="el" href="namespacegridfire_1_1diagnostics.html#a9d95a6c9c4a942d71ff4c8046fe4107a">gridfire::diagnostics</a></li>
 <li>RT_TEMPERATURE_GRID_T9&#160;:&#160;<a class="el" href="namespacegridfire_1_1partition.html#a1e08a3c20c55bc6fa4a4ecdf7ea57b8f">gridfire::partition</a></li>
 </ul>
 
 
 <h3><a id="index_s" name="index_s"></a>- s -</h3><ul>
-<li>s_all_reaclib_reactions_ptr&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaclib.html#a5dba5efc372d2a9e9e846dfd6563f3c0">gridfire::reaclib</a></li>
+<li>s_all_reaclib_reactions_ptr&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaclib.html#a1f75b17a44c23261a221f7558b1a63d9">gridfire::reaclib</a></li>
 <li>s_initialized&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaclib.html#af6ff0dfe7ffe34c73ba9acbab5ef8a66">gridfire::reaclib</a></li>
-<li>s_operator_parens_called&#160;:&#160;<a class="el" href="namespacegridfire.html#a8b632637f62614f509cde0e404a79054">gridfire</a></li>
 <li>ScreeningType&#160;:&#160;<a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening</a></li>
 <li>selectScreeningModel()&#160;:&#160;<a class="el" href="namespacegridfire_1_1screening.html#a6ca8556d27ac373e176f5b23437c416e">gridfire::screening</a></li>
 <li>SparsityPattern&#160;:&#160;<a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">gridfire</a></li>
@@ -227,12 +231,14 @@ $(function(){initNavTree('namespacemembers.html',''); initResizable(true); });
 
 
 <h3><a id="index_t" name="index_t"></a>- t -</h3><ul>
+<li>TableAxes&#160;:&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">gridfire::rates::weak</a></li>
 <li>trim_whitespace()&#160;:&#160;<a class="el" href="namespacegridfire.html#a8b245f261cd8d1711ae8d593b054cf98">gridfire</a></li>
 <li>triple_alpha_rate()&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#a2715e1a6421717991814892046b896e3">gridfire::approx8</a></li>
 </ul>
 
 
 <h3><a id="index_u" name="index_u"></a>- u -</h3><ul>
+<li>UNIFIED_WEAK_DATA&#160;:&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ac48364695089056d9a9b10689c4338e7">gridfire::rates::weak</a></li>
 <li>UNKNOWN&#160;:&#160;<a class="el" href="namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2">gridfire</a></li>
 </ul>
 
@@ -241,6 +247,13 @@ $(function(){initNavTree('namespacemembers.html',''); initResizable(true); });
 <li>vec7&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#aaa49cb0c9ad4b0b9dd0f9b5e192ca12a">gridfire::approx8</a></li>
 <li>vector_type&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#aa04f907d4ef6a1b6b2a9a28d4bb53882">gridfire::approx8</a></li>
 </ul>
+
+
+<h3><a id="index_w" name="index_w"></a>- w -</h3><ul>
+<li>weak_reaction_type_name()&#160;:&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a81f6133710abef28d9d2b030fdbaaeef">gridfire::rates::weak</a></li>
+<li>WeakMapError&#160;:&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550">gridfire::rates::weak</a></li>
+<li>WeakReactionType&#160;:&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">gridfire::rates::weak</a></li>
+</ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/namespacemembers_enum.html b/docs/html/namespacemembers_enum.html
index da31a28d..dfe99e3e 100644
--- a/docs/html/namespacemembers_enum.html
+++ b/docs/html/namespacemembers_enum.html
@@ -102,11 +102,17 @@ $(function(){initNavTree('namespacemembers_enum.html',''); initResizable(true);
 <div class="textblock">Here is a list of all namespace enums with links to the namespace documentation for each enum:</div><ul>
 <li>BasePartitionType&#160;:&#160;<a class="el" href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728c">gridfire::partition</a></li>
 <li>EngineErrorTypes&#160;:&#160;<a class="el" href="namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87c">gridfire::expectations</a></li>
+<li>InterpolationErrorType&#160;:&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4">gridfire::rates::weak</a></li>
 <li>NetworkBuildDepth&#160;:&#160;<a class="el" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57">gridfire</a></li>
 <li>NetworkFormat&#160;:&#160;<a class="el" href="namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37">gridfire</a></li>
+<li>NeutrinoTypes&#160;:&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70ca">gridfire::rates::weak</a></li>
 <li>PrimingReportStatus&#160;:&#160;<a class="el" href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154">gridfire</a></li>
+<li>ReactionType&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">gridfire::reaction</a></li>
 <li>ScreeningType&#160;:&#160;<a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening</a></li>
 <li>StaleEngineErrorTypes&#160;:&#160;<a class="el" href="namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7">gridfire::expectations</a></li>
+<li>TableAxes&#160;:&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">gridfire::rates::weak</a></li>
+<li>WeakMapError&#160;:&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550">gridfire::rates::weak</a></li>
+<li>WeakReactionType&#160;:&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">gridfire::rates::weak</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/namespacemembers_func.html b/docs/html/namespacemembers_func.html
index 0a242dba..e9957a5f 100644
--- a/docs/html/namespacemembers_func.html
+++ b/docs/html/namespacemembers_func.html
@@ -102,7 +102,8 @@ $(function(){initNavTree('namespacemembers_func.html',''); initResizable(true);
 <div class="textblock">Here is a list of all namespace functions with links to the namespace documentation for each function:</div>
 
 <h3><a id="index_b" name="index_b"></a>- b -</h3><ul>
-<li>build_reaclib_nuclear_network()&#160;:&#160;<a class="el" href="namespacegridfire.html#aedddb89e400a6111f69bfe0c3fd4214e">gridfire</a></li>
+<li>build_nuclear_network()&#160;:&#160;<a class="el" href="namespacegridfire.html#a58a036e8883e75a8abd3e18798563f71">gridfire</a></li>
+<li>build_reaclib_nuclear_network()&#160;:&#160;<a class="el" href="namespacegridfire.html#a384323338f13166d87c7ac047434bd38">gridfire</a></li>
 </ul>
 
 
@@ -111,8 +112,8 @@ $(function(){initNavTree('namespacemembers_func.html',''); initResizable(true);
 <li>c12c12_rate()&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#a70eb18e9706ac28a308dcb4fcec7421f">gridfire::approx8</a></li>
 <li>c12o16_rate()&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#a8c30b7e6099c5fc2aa94f9c68fd075dc">gridfire::approx8</a></li>
 <li>c12p_rate()&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#a890ad24c2cdb15fb76a3ff8a7b8d77db">gridfire::approx8</a></li>
-<li>calculateCreationRate()&#160;:&#160;<a class="el" href="namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d">gridfire</a></li>
-<li>calculateDestructionRateConstant()&#160;:&#160;<a class="el" href="namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2">gridfire</a></li>
+<li>calculateCreationRate()&#160;:&#160;<a class="el" href="namespacegridfire.html#a8995b949592d59850e45a3fd27306369">gridfire</a></li>
+<li>calculateDestructionRateConstant()&#160;:&#160;<a class="el" href="namespacegridfire.html#ab6e14208fad69f4031411a9346c12397">gridfire</a></li>
 </ul>
 
 
@@ -122,13 +123,14 @@ $(function(){initNavTree('namespacemembers_func.html',''); initResizable(true);
 
 
 <h3><a id="index_f" name="index_f"></a>- f -</h3><ul>
-<li>findDominantCreationChannel()&#160;:&#160;<a class="el" href="namespacegridfire.html#aefc63ddbfe97dcb4178c94dfd1c4b256">gridfire</a></li>
-<li>formatNuclearTimescaleLogString()&#160;:&#160;<a class="el" href="namespacegridfire_1_1utils.html#af56693a70d9e2b40c8ae2c3bcd4b26c8">gridfire::utils</a></li>
+<li>findDominantCreationChannel()&#160;:&#160;<a class="el" href="namespacegridfire.html#a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f">gridfire</a></li>
+<li>format_table()&#160;:&#160;<a class="el" href="namespacegridfire_1_1utils.html#a6451ba6762273b91a8281043cfaa5d2a">gridfire::utils</a></li>
+<li>formatNuclearTimescaleLogString()&#160;:&#160;<a class="el" href="namespacegridfire_1_1utils.html#a05fda32d3fc4ab10060b8c4c251c2f3d">gridfire::utils</a></li>
 </ul>
 
 
 <h3><a id="index_g" name="index_g"></a>- g -</h3><ul>
-<li>get_all_reactions()&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaclib.html#a91c7971c9d0a2971b9a6fa4d841c761d">gridfire::reaclib</a></li>
+<li>get_all_reaclib_reactions()&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaclib.html#a5f2326f2f76cb1895d6cf5daed9b030b">gridfire::reaclib</a></li>
 <li>get_T9_array()&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#a20f9c48e60a5abf0b6868d1d05080222">gridfire::approx8</a></li>
 </ul>
 
@@ -141,6 +143,13 @@ $(function(){initNavTree('namespacemembers_func.html',''); initResizable(true);
 
 <h3><a id="index_i" name="index_i"></a>- i -</h3><ul>
 <li>initializeAllReaclibReactions()&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaclib.html#a02ff11b88be94392151873e06a30b276">gridfire::reaclib</a></li>
+<li>inspect_jacobian_stiffness()&#160;:&#160;<a class="el" href="namespacegridfire_1_1diagnostics.html#a066ee899bd259062716f25abae3890b0">gridfire::diagnostics</a></li>
+<li>inspect_species_balance()&#160;:&#160;<a class="el" href="namespacegridfire_1_1diagnostics.html#a11c0d538e7244bee168d7f9217442128">gridfire::diagnostics</a></li>
+</ul>
+
+
+<h3><a id="index_m" name="index_m"></a>- m -</h3><ul>
+<li>makeEnginePartitioningTrigger()&#160;:&#160;<a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html#a26555ea09be620dabc5f9644be8f9908">gridfire::trigger::solver::CVODE</a></li>
 </ul>
 
 
@@ -162,15 +171,17 @@ $(function(){initNavTree('namespacemembers_func.html',''); initResizable(true);
 
 
 <h3><a id="index_p" name="index_p"></a>- p -</h3><ul>
-<li>packReactionSetToLogicalReactionSet()&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaction.html#abfcfafc0cda0c3ed56930a12e7ead67f">gridfire::reaction</a></li>
+<li>packReactionSet()&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaction.html#af34403cccdb4a091e979f0f895be2f8c">gridfire::reaction</a></li>
 <li>parseSpeciesString()&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaclib.html#afc0deac6cbef076e8884e66fd3ab66e0">gridfire::reaclib</a></li>
 <li>pp_rate()&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#a16739298c01e56967ce784a9a957439f">gridfire::approx8</a></li>
-<li>primeNetwork()&#160;:&#160;<a class="el" href="namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f">gridfire</a></li>
+<li>primeNetwork()&#160;:&#160;<a class="el" href="namespacegridfire.html#a3cd451f4b7a7bc7c2d7007ebb343e9ac">gridfire</a></li>
+<li>printWhy()&#160;:&#160;<a class="el" href="namespacegridfire_1_1trigger.html#a5e0fe21f3356426f26b109cdeb1edcd9">gridfire::trigger</a></li>
 </ul>
 
 
 <h3><a id="index_r" name="index_r"></a>- r -</h3><ul>
 <li>rate_fit()&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#aed8175751b4920a53922f87f8c0e63c4">gridfire::approx8</a></li>
+<li>report_limiting_species()&#160;:&#160;<a class="el" href="namespacegridfire_1_1diagnostics.html#a9d95a6c9c4a942d71ff4c8046fe4107a">gridfire::diagnostics</a></li>
 </ul>
 
 
@@ -184,6 +195,11 @@ $(function(){initNavTree('namespacemembers_func.html',''); initResizable(true);
 <li>trim_whitespace()&#160;:&#160;<a class="el" href="namespacegridfire.html#a8b245f261cd8d1711ae8d593b054cf98">gridfire</a></li>
 <li>triple_alpha_rate()&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#a2715e1a6421717991814892046b896e3">gridfire::approx8</a></li>
 </ul>
+
+
+<h3><a id="index_w" name="index_w"></a>- w -</h3><ul>
+<li>weak_reaction_type_name()&#160;:&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a81f6133710abef28d9d2b030fdbaaeef">gridfire::rates::weak</a></li>
+</ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/namespacemembers_type.html b/docs/html/namespacemembers_type.html
index ba34a5db..565c737a 100644
--- a/docs/html/namespacemembers_type.html
+++ b/docs/html/namespacemembers_type.html
@@ -103,10 +103,8 @@ $(function(){initNavTree('namespacemembers_type.html',''); initResizable(true);
 <li>ADDouble&#160;:&#160;<a class="el" href="namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc">gridfire</a>, <a class="el" href="namespacegridfire_1_1screening.html#ae7dd1a7ccb7bf3c05084094ab008d8a3">gridfire::screening</a></li>
 <li>BuildDepthType&#160;:&#160;<a class="el" href="namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6">gridfire</a></li>
 <li>DynamicNetworkSolverStrategy&#160;:&#160;<a class="el" href="namespacegridfire_1_1solver.html#a8118d08bc25e439754b43a3f5ecc1db3">gridfire::solver</a></li>
-<li>LogicalReactionSet&#160;:&#160;<a class="el" href="namespacegridfire.html#aa86f08712565f278adacc7cd2361eb31">gridfire</a>, <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction</a></li>
 <li>matrix_type&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#a275aecf94e3145c2ff3d1756deda54ce">gridfire::approx8</a></li>
 <li>ParsedNetworkData&#160;:&#160;<a class="el" href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">gridfire::io</a></li>
-<li>ReactionSet&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1">gridfire::reaction</a>, <a class="el" href="namespacegridfire.html#ad838ce3fb6cc02c3fd90b924a0dd91b1">gridfire</a></li>
 <li>SparsityPattern&#160;:&#160;<a class="el" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">gridfire</a></li>
 <li>vec7&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#aaa49cb0c9ad4b0b9dd0f9b5e192ca12a">gridfire::approx8</a></li>
 <li>vector_type&#160;:&#160;<a class="el" href="namespacegridfire_1_1approx8.html#aa04f907d4ef6a1b6b2a9a28d4bb53882">gridfire::approx8</a></li>
diff --git a/docs/html/namespacemembers_vars.html b/docs/html/namespacemembers_vars.html
index 714fc9e5..98d36d09 100644
--- a/docs/html/namespacemembers_vars.html
+++ b/docs/html/namespacemembers_vars.html
@@ -102,15 +102,16 @@ $(function(){initNavTree('namespacemembers_vars.html',''); initResizable(true);
 <div class="textblock">Here is a list of all namespace variables with links to the namespace documentation for each variable:</div><ul>
 <li>basePartitionTypeToString&#160;:&#160;<a class="el" href="namespacegridfire_1_1partition.html#a97237521bc760f7521346f8db472dc8e">gridfire::partition</a></li>
 <li>FormatStringLookup&#160;:&#160;<a class="el" href="namespacegridfire.html#a4e9cabad30b57d636c2f0d73d8cc6bb4">gridfire</a></li>
+<li>InterpolationErrorTypeMap&#160;:&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a7a262a98e1956c33645bad4eb4e40c7a">gridfire::rates::weak</a></li>
 <li>MIN_ABUNDANCE_THRESHOLD&#160;:&#160;<a class="el" href="namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06">gridfire</a></li>
 <li>MIN_DENSITY_THRESHOLD&#160;:&#160;<a class="el" href="namespacegridfire.html#ada3c137c014ecd8d06200fea2d1a9f50">gridfire</a></li>
 <li>MIN_JACOBIAN_THRESHOLD&#160;:&#160;<a class="el" href="namespacegridfire.html#ae01b1738df1921db565bcbd68dd6cf64">gridfire</a></li>
 <li>PrimingReportStatusStrings&#160;:&#160;<a class="el" href="namespacegridfire.html#a02be158966bf82a91b159b7a962c3fa5">gridfire</a></li>
 <li>RT_TEMPERATURE_GRID_T9&#160;:&#160;<a class="el" href="namespacegridfire_1_1partition.html#a1e08a3c20c55bc6fa4a4ecdf7ea57b8f">gridfire::partition</a></li>
-<li>s_all_reaclib_reactions_ptr&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaclib.html#a5dba5efc372d2a9e9e846dfd6563f3c0">gridfire::reaclib</a></li>
+<li>s_all_reaclib_reactions_ptr&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaclib.html#a1f75b17a44c23261a221f7558b1a63d9">gridfire::reaclib</a></li>
 <li>s_initialized&#160;:&#160;<a class="el" href="namespacegridfire_1_1reaclib.html#af6ff0dfe7ffe34c73ba9acbab5ef8a66">gridfire::reaclib</a></li>
-<li>s_operator_parens_called&#160;:&#160;<a class="el" href="namespacegridfire.html#a8b632637f62614f509cde0e404a79054">gridfire</a></li>
 <li>stringToBasePartitionType&#160;:&#160;<a class="el" href="namespacegridfire_1_1partition.html#a84de6308486d35ce8bc1a9dea52dfa4a">gridfire::partition</a></li>
+<li>UNIFIED_WEAK_DATA&#160;:&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ac48364695089056d9a9b10689c4338e7">gridfire::rates::weak</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/namespaces.html b/docs/html/namespaces.html
index 94f10212..cfe01710 100644
--- a/docs/html/namespaces.html
+++ b/docs/html/namespaces.html
@@ -103,19 +103,25 @@ $(function(){initNavTree('namespaces.html',''); initResizable(true); });
 </div><!--header-->
 <div class="contents">
 <div class="textblock">Here is a list of all namespaces with brief descriptions:</div><div class="directory">
-<div class="levels">[detail level <span onclick="javascript:dynsection.toggleLevel(1);">1</span><span onclick="javascript:dynsection.toggleLevel(2);">2</span><span onclick="javascript:dynsection.toggleLevel(3);">3</span>]</div><table class="directory">
+<div class="levels">[detail level <span onclick="javascript:dynsection.toggleLevel(1);">1</span><span onclick="javascript:dynsection.toggleLevel(2);">2</span><span onclick="javascript:dynsection.toggleLevel(3);">3</span><span onclick="javascript:dynsection.toggleLevel(4);">4</span>]</div><table class="directory">
 <tr id="row_0_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_0_" class="arrow" onclick="dynsection.toggleFolder('0_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire.html" target="_self">gridfire</a></td><td class="desc"></td></tr>
 <tr id="row_0_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1approx8.html" target="_self">approx8</a></td><td class="desc"></td></tr>
-<tr id="row_0_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1exceptions.html" target="_self">exceptions</a></td><td class="desc"></td></tr>
-<tr id="row_0_2_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1expectations.html" target="_self">expectations</a></td><td class="desc"></td></tr>
-<tr id="row_0_3_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1io.html" target="_self">io</a></td><td class="desc"></td></tr>
-<tr id="row_0_4_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_4_" class="arrow" onclick="dynsection.toggleFolder('0_4_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1partition.html" target="_self">partition</a></td><td class="desc"></td></tr>
-<tr id="row_0_4_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1partition_1_1record.html" target="_self">record</a></td><td class="desc"></td></tr>
-<tr id="row_0_5_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1reaclib.html" target="_self">reaclib</a></td><td class="desc"></td></tr>
-<tr id="row_0_6_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1reaction.html" target="_self">reaction</a></td><td class="desc"></td></tr>
-<tr id="row_0_7_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1screening.html" target="_self">screening</a></td><td class="desc"></td></tr>
-<tr id="row_0_8_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1solver.html" target="_self">solver</a></td><td class="desc"></td></tr>
-<tr id="row_0_9_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1utils.html" target="_self">utils</a></td><td class="desc"></td></tr>
+<tr id="row_0_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1diagnostics.html" target="_self">diagnostics</a></td><td class="desc"></td></tr>
+<tr id="row_0_2_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1exceptions.html" target="_self">exceptions</a></td><td class="desc"></td></tr>
+<tr id="row_0_3_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1expectations.html" target="_self">expectations</a></td><td class="desc"></td></tr>
+<tr id="row_0_4_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1io.html" target="_self">io</a></td><td class="desc"></td></tr>
+<tr id="row_0_5_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_5_" class="arrow" onclick="dynsection.toggleFolder('0_5_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1partition.html" target="_self">partition</a></td><td class="desc"></td></tr>
+<tr id="row_0_5_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1partition_1_1record.html" target="_self">record</a></td><td class="desc"></td></tr>
+<tr id="row_0_6_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_6_" class="arrow" onclick="dynsection.toggleFolder('0_6_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1rates.html" target="_self">rates</a></td><td class="desc"></td></tr>
+<tr id="row_0_6_0_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1rates_1_1weak.html" target="_self">weak</a></td><td class="desc"></td></tr>
+<tr id="row_0_7_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1reaclib.html" target="_self">reaclib</a></td><td class="desc"></td></tr>
+<tr id="row_0_8_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1reaction.html" target="_self">reaction</a></td><td class="desc"></td></tr>
+<tr id="row_0_9_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1screening.html" target="_self">screening</a></td><td class="desc"></td></tr>
+<tr id="row_0_10_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1solver.html" target="_self">solver</a></td><td class="desc"></td></tr>
+<tr id="row_0_11_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_11_" class="arrow" onclick="dynsection.toggleFolder('0_11_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1trigger.html" target="_self">trigger</a></td><td class="desc"></td></tr>
+<tr id="row_0_11_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_11_0_" class="arrow" onclick="dynsection.toggleFolder('0_11_0_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1trigger_1_1solver.html" target="_self">solver</a></td><td class="desc"></td></tr>
+<tr id="row_0_11_0_0_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html" target="_self">CVODE</a></td><td class="desc"></td></tr>
+<tr id="row_0_12_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1utils.html" target="_self">utils</a></td><td class="desc"></td></tr>
 <tr id="row_1_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacestd.html" target="_self">std</a></td><td class="desc">STL namespace </td></tr>
 </table>
 </div><!-- directory -->
diff --git a/docs/html/namespacestd.html b/docs/html/namespacestd.html
index 84678e61..63f8c1a9 100644
--- a/docs/html/namespacestd.html
+++ b/docs/html/namespacestd.html
@@ -205,8 +205,6 @@ Classes</h2></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html">hash&lt; gridfire::QSECacheKey &gt;</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html">hash&lt; gridfire::reaction::LogicalReactionSet &gt;</a></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html">hash&lt; gridfire::reaction::Reaction &gt;</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html">hash&lt; gridfire::reaction::ReactionSet &gt;</a></td></tr>
diff --git a/docs/html/namespacestd.js b/docs/html/namespacestd.js
index abaf5734..6f9dd718 100644
--- a/docs/html/namespacestd.js
+++ b/docs/html/namespacestd.js
@@ -1,7 +1,6 @@
 var namespacestd =
 [
     [ "hash< gridfire::QSECacheKey >", "structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html", "structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4" ],
-    [ "hash< gridfire::reaction::LogicalReactionSet >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4" ],
     [ "hash< gridfire::reaction::Reaction >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4" ],
     [ "hash< gridfire::reaction::ReactionSet >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4" ]
 ];
\ No newline at end of file
diff --git a/docs/html/navtreedata.js b/docs/html/navtreedata.js
index b1349aa8..069db6d0 100644
--- a/docs/html/navtreedata.js
+++ b/docs/html/navtreedata.js
@@ -143,7 +143,8 @@ var NAVTREE =
         [ "All", "globals.html", null ],
         [ "Functions", "globals_func.html", null ],
         [ "Variables", "globals_vars.html", null ],
-        [ "Typedefs", "globals_type.html", null ]
+        [ "Typedefs", "globals_type.html", null ],
+        [ "Macros", "globals_defs.html", null ]
       ] ]
     ] ],
     [ "Examples", "examples.html", "examples" ]
@@ -153,13 +154,16 @@ var NAVTREE =
 var NAVTREEINDEX =
 [
 "_2_users_2tboudreaux_2_programming_24_d_s_t_a_r_2_grid_fire_2src_2include_2gridfire_2engine_2engine_approx8_8h-example.html",
-"classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f",
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044",
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937",
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5962968fe478c79250e9d88d80a87600",
-"functions_vars_f.html",
-"rauscher__thielemann__partition__data_8h.html#a5240736f3bdb43cf2cd63464c5835df1",
-"structgridfire_1_1approx8_1_1_approx8_net.html#a95b9a07e29285884e6de523f8132f653"
+"classgridfire_1_1_dynamic_engine.html#a8f66fb76c9f983ee93bf8b95cdc85596",
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a40ce2c18063cd56cffd58419b9ae96bf",
+"classgridfire_1_1exceptions_1_1_stale_engine_error.html",
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aefc75b3149bee2da878177279ad375da",
+"classgridfire_1_1reaction_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987",
+"classgridfire_1_1trigger_1_1_or_trigger.html#a6da04b5b15371f7087be03bb337dbdd6",
+"engine_2bindings_8h.html#a73a2ec4150b3954550f16b97102ec993",
+"namespacegridfire_1_1approx8.html#aa04f907d4ef6a1b6b2a9a28d4bb53882",
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77",
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#acf5c38826050594aee98d746d0ba40b2"
 ];
 
 var SYNCONMSG = 'click to disable panel synchronization';
diff --git a/docs/html/navtreeindex0.js b/docs/html/navtreeindex0.js
index 23a7136d..30738312 100644
--- a/docs/html/navtreeindex0.js
+++ b/docs/html/navtreeindex0.js
@@ -1,33 +1,35 @@
 var NAVTREEINDEX0 =
 {
 "_2_users_2tboudreaux_2_programming_24_d_s_t_a_r_2_grid_fire_2src_2include_2gridfire_2engine_2engine_approx8_8h-example.html":[9,0],
+"_c_v_o_d_e__solver__strategy_8cpp.html":[8,0,1,1,5,0,1],
+"_c_v_o_d_e__solver__strategy_8h.html":[8,0,1,0,0,8,0,1],
 "annotated.html":[7,0],
 "bindings_8cpp.html":[8,0,1,2,10],
 "bindings_8cpp.html#aa8955e3a8d1ea2d94e8a2c941a12c03f":[8,0,1,2,10,0],
-"building_8h.html":[8,0,1,0,0,0,1,0],
+"building_8h.html":[8,0,1,0,0,0,2,0],
 "class_py_dynamic_engine.html":[7,0,2],
 "class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3":[7,0,2,10],
 "class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22":[7,0,2,12],
 "class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159":[7,0,2,6],
+"class_py_dynamic_engine.html#a1d5143640666631501cf229bc491516e":[7,0,2,7],
 "class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9":[7,0,2,4],
 "class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03":[7,0,2,21],
-"class_py_dynamic_engine.html#a2ee1d745c1c21b9fcb652c96c42f1091":[7,0,2,11],
 "class_py_dynamic_engine.html#a3d30a9116825ab2c5c209bc2712126bc":[7,0,2,17],
 "class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14":[7,0,2,14],
-"class_py_dynamic_engine.html#a5988cfba247631ba6c00795cafda9a38":[7,0,2,7],
 "class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a":[7,0,2,1],
 "class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d":[7,0,2,2],
 "class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac":[7,0,2,15],
 "class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a":[7,0,2,0],
+"class_py_dynamic_engine.html#a95d10a7b240d543a1bc6c67ddf2dc8e0":[7,0,2,11],
 "class_py_dynamic_engine.html#aa0f1fd3f0c0185395193d1b6897d64c5":[7,0,2,3],
 "class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83":[7,0,2,13],
 "class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5":[7,0,2,9],
 "class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878":[7,0,2,16],
 "class_py_dynamic_engine.html#adba68716d832b6100e08d32fbc36f13c":[7,0,2,5],
+"class_py_dynamic_engine.html#af469cba3be850d53f659ec173f0eb4e4":[7,0,2,18],
 "class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8":[7,0,2,20],
 "class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac":[7,0,2,19],
 "class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d":[7,0,2,8],
-"class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6":[7,0,2,18],
 "class_py_dynamic_engine_view.html":[7,0,3],
 "class_py_dynamic_engine_view.html#a51680b135cfc3eea40daf9ef5aa903e0":[7,0,3,0],
 "class_py_dynamic_network_solver_strategy.html":[7,0,4],
@@ -50,204 +52,202 @@ var NAVTREEINDEX0 =
 "class_py_partition_function.html#a83aca0bc261734b7d3df8269f730c69b":[7,0,8,1],
 "class_py_partition_function.html#af918b357e38fb82499ad53584557c43d":[7,0,8,0],
 "class_py_screening.html":[7,0,9],
-"class_py_screening.html#a2b8756c197eb89e77cb6dd231c979315":[7,0,9,1],
-"class_py_screening.html#a5539d59311c778cf7f0006acc8f84ade":[7,0,9,0],
+"class_py_screening.html#a68a126de903e1a87a1d7d1cfec8add0f":[7,0,9,0],
+"class_py_screening.html#aa67b5f0528006d9c742033b8c5ab3a05":[7,0,9,1],
+"class_solver_plugin_interface.html":[7,0,10],
+"class_solver_plugin_interface.html#a493a30c0ae4b2e1a89b7d03c02c0041c":[7,0,10,1],
+"class_solver_plugin_interface.html#a5611d046cd2fd4d4200785725854e39b":[7,0,10,0],
 "classes.html":[7,1],
-"classgridfire_1_1_adaptive_engine_view.html":[5,0,0,10],
-"classgridfire_1_1_adaptive_engine_view.html":[7,0,0,9],
-"classgridfire_1_1_adaptive_engine_view.html#a03fc187d3d306b9058103b9522cbbaeb":[5,0,0,10,13],
-"classgridfire_1_1_adaptive_engine_view.html#a03fc187d3d306b9058103b9522cbbaeb":[7,0,0,9,13],
-"classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31":[5,0,0,10,6],
-"classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31":[7,0,0,9,6],
-"classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f":[5,0,0,10,19],
-"classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f":[7,0,0,9,19],
-"classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b":[5,0,0,10,12],
-"classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b":[7,0,0,9,12],
-"classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c":[5,0,0,10,17],
-"classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c":[7,0,0,9,17],
-"classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30":[5,0,0,10,39],
-"classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30":[7,0,0,9,39],
-"classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800":[5,0,0,10,36],
-"classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800":[7,0,0,9,36],
-"classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de":[5,0,0,10,42],
-"classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de":[7,0,0,9,42],
-"classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111":[5,0,0,10,14],
-"classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111":[7,0,0,9,14],
-"classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8":[5,0,0,10,27],
-"classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8":[7,0,0,9,27],
-"classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd":[5,0,0,10,34],
-"classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd":[7,0,0,9,34],
-"classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44":[5,0,0,10,28],
-"classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44":[7,0,0,9,28],
-"classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08":[5,0,0,10,10],
-"classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08":[7,0,0,9,10],
-"classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58":[5,0,0,10,16],
-"classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58":[7,0,0,9,16],
-"classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8":[5,0,0,10,38],
-"classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8":[7,0,0,9,38],
-"classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9":[5,0,0,10,22],
-"classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9":[7,0,0,9,22],
-"classgridfire_1_1_adaptive_engine_view.html#a4ff60b5214ec0bdaf683feb6615573a5":[5,0,0,10,3],
-"classgridfire_1_1_adaptive_engine_view.html#a4ff60b5214ec0bdaf683feb6615573a5":[7,0,0,9,3],
-"classgridfire_1_1_adaptive_engine_view.html#a522e78bce9ff062939572248d57f8cea":[5,0,0,10,20],
-"classgridfire_1_1_adaptive_engine_view.html#a522e78bce9ff062939572248d57f8cea":[7,0,0,9,20],
-"classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103":[5,0,0,10,2],
-"classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103":[7,0,0,9,2],
-"classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093":[5,0,0,10,43],
-"classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093":[7,0,0,9,43],
-"classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e":[5,0,0,10,40],
-"classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e":[7,0,0,9,40],
-"classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9":[5,0,0,10,23],
-"classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9":[7,0,0,9,23],
-"classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1":[5,0,0,10,25],
-"classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1":[7,0,0,9,25],
-"classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3":[5,0,0,10,30],
-"classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3":[7,0,0,9,30],
-"classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672":[5,0,0,10,32],
-"classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672":[7,0,0,9,32],
-"classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019":[5,0,0,10,29],
-"classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019":[7,0,0,9,29],
-"classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f":[5,0,0,10,31],
-"classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f":[7,0,0,9,31],
-"classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c":[5,0,0,10,8],
-"classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c":[7,0,0,9,8],
-"classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d":[5,0,0,10,9],
-"classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d":[7,0,0,9,9],
-"classgridfire_1_1_adaptive_engine_view.html#a9055feb245524a5a9549ace935f059ff":[5,0,0,10,21],
-"classgridfire_1_1_adaptive_engine_view.html#a9055feb245524a5a9549ace935f059ff":[7,0,0,9,21],
-"classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101":[5,0,0,10,26],
-"classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101":[7,0,0,9,26],
-"classgridfire_1_1_adaptive_engine_view.html#aa79fb382c98461b02a2c30668491e6c5":[5,0,0,10,11],
-"classgridfire_1_1_adaptive_engine_view.html#aa79fb382c98461b02a2c30668491e6c5":[7,0,0,9,11],
-"classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b":[5,0,0,10,33],
-"classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b":[7,0,0,9,33],
-"classgridfire_1_1_adaptive_engine_view.html#abdbaf4b87629efe43ac1255dad424c0c":[5,0,0,10,5],
-"classgridfire_1_1_adaptive_engine_view.html#abdbaf4b87629efe43ac1255dad424c0c":[7,0,0,9,5],
-"classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193":[5,0,0,10,41],
-"classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193":[7,0,0,9,41],
-"classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1":[5,0,0,10,18],
-"classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1":[7,0,0,9,18],
-"classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88":[5,0,0,10,24],
-"classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88":[7,0,0,9,24],
-"classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455":[5,0,0,10,4],
-"classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455":[7,0,0,9,4],
-"classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40":[5,0,0,10,35],
-"classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40":[7,0,0,9,35],
-"classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c":[5,0,0,10,15],
-"classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c":[7,0,0,9,15],
-"classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940":[5,0,0,10,37],
-"classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940":[7,0,0,9,37],
-"classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5":[5,0,0,10,7],
-"classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5":[7,0,0,9,7],
-"classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3":[5,0,0,10,1],
-"classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3":[7,0,0,9,1],
-"classgridfire_1_1_defined_engine_view.html":[5,0,0,11],
-"classgridfire_1_1_defined_engine_view.html":[7,0,0,10],
-"classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460":[5,0,0,11,23],
-"classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460":[7,0,0,10,23],
-"classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032":[5,0,0,11,1],
-"classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032":[7,0,0,10,1],
-"classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211":[5,0,0,11,11],
-"classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211":[7,0,0,10,11],
-"classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382":[5,0,0,11,31],
-"classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382":[7,0,0,10,31],
-"classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b":[5,0,0,11,9],
-"classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b":[7,0,0,10,9],
-"classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873":[5,0,0,11,18],
-"classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873":[7,0,0,10,18],
-"classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965":[5,0,0,11,28],
-"classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965":[7,0,0,10,28],
-"classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c":[5,0,0,11,12],
-"classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c":[7,0,0,10,12],
-"classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491":[5,0,0,11,13],
-"classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491":[7,0,0,10,13],
-"classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d":[5,0,0,11,2],
-"classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d":[7,0,0,10,2],
-"classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3":[5,0,0,11,32],
-"classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3":[7,0,0,10,32],
-"classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0":[5,0,0,11,27],
-"classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0":[7,0,0,10,27],
-"classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843":[5,0,0,11,20],
-"classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843":[7,0,0,10,20],
-"classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae":[5,0,0,11,29],
-"classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae":[7,0,0,10,29],
-"classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484":[5,0,0,11,8],
-"classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484":[7,0,0,10,8],
-"classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195":[5,0,0,11,30],
-"classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195":[7,0,0,10,30],
-"classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2":[5,0,0,11,19],
-"classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2":[7,0,0,10,19],
-"classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87":[5,0,0,11,17],
-"classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87":[7,0,0,10,17],
-"classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d":[5,0,0,11,24],
-"classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d":[7,0,0,10,24],
-"classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92":[5,0,0,11,0],
-"classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92":[7,0,0,10,0],
-"classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985":[5,0,0,11,5],
-"classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985":[7,0,0,10,5],
-"classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1":[5,0,0,11,21],
-"classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1":[7,0,0,10,21],
-"classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68":[5,0,0,11,4],
-"classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68":[7,0,0,10,4],
-"classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258":[5,0,0,11,25],
-"classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258":[7,0,0,10,25],
-"classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3":[5,0,0,11,14],
-"classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3":[7,0,0,10,14],
-"classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72":[5,0,0,11,15],
-"classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72":[7,0,0,10,15],
-"classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e":[5,0,0,11,34],
-"classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e":[7,0,0,10,34],
-"classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6":[5,0,0,11,7],
-"classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6":[7,0,0,10,7],
-"classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae":[5,0,0,11,6],
-"classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae":[7,0,0,10,6],
-"classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e":[5,0,0,11,3],
-"classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e":[7,0,0,10,3],
-"classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d":[5,0,0,11,10],
-"classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d":[7,0,0,10,10],
-"classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae":[5,0,0,11,26],
-"classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae":[7,0,0,10,26],
-"classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a":[5,0,0,11,22],
-"classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a":[7,0,0,10,22],
-"classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2":[5,0,0,11,16],
-"classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2":[7,0,0,10,16],
-"classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd":[5,0,0,11,33],
-"classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd":[7,0,0,10,33],
-"classgridfire_1_1_dynamic_engine.html":[5,0,0,12],
-"classgridfire_1_1_dynamic_engine.html":[7,0,0,11],
-"classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9":[5,0,0,12,4],
-"classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9":[7,0,0,11,4],
-"classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07":[5,0,0,12,5],
-"classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07":[7,0,0,11,5],
-"classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e":[5,0,0,12,14],
-"classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e":[7,0,0,11,14],
-"classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d":[5,0,0,12,1],
-"classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d":[7,0,0,11,1],
-"classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd":[5,0,0,12,17],
-"classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd":[7,0,0,11,17],
-"classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf":[5,0,0,12,15],
-"classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf":[7,0,0,11,15],
-"classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a":[5,0,0,12,13],
-"classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a":[7,0,0,11,13],
-"classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785":[5,0,0,12,0],
-"classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785":[7,0,0,11,0],
-"classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813":[5,0,0,12,10],
-"classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813":[7,0,0,11,10],
-"classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6":[5,0,0,12,8],
-"classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6":[7,0,0,11,8],
-"classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0":[5,0,0,12,7],
-"classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0":[7,0,0,11,7],
-"classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7":[5,0,0,12,2],
-"classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7":[7,0,0,11,2],
-"classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398":[5,0,0,12,12],
-"classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398":[7,0,0,11,12],
-"classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a":[5,0,0,12,18],
-"classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a":[7,0,0,11,18],
-"classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037":[5,0,0,12,6],
-"classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037":[7,0,0,11,6],
-"classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9":[5,0,0,12,9],
-"classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9":[7,0,0,11,9],
-"classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f":[5,0,0,12,3],
-"classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f":[7,0,0,11,3],
-"classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f":[5,0,0,12,11]
+"classgridfire_1_1_adaptive_engine_view.html":[5,0,0,13],
+"classgridfire_1_1_adaptive_engine_view.html":[7,0,0,12],
+"classgridfire_1_1_adaptive_engine_view.html#a0439f464865b4c01bad0f6be6055c3fc":[5,0,0,13,32],
+"classgridfire_1_1_adaptive_engine_view.html#a0439f464865b4c01bad0f6be6055c3fc":[7,0,0,12,32],
+"classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f":[5,0,0,13,20],
+"classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f":[7,0,0,12,20],
+"classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b":[5,0,0,13,13],
+"classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b":[7,0,0,12,13],
+"classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30":[5,0,0,13,40],
+"classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30":[7,0,0,12,40],
+"classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de":[5,0,0,13,43],
+"classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de":[7,0,0,12,43],
+"classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111":[5,0,0,13,15],
+"classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111":[7,0,0,12,15],
+"classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8":[5,0,0,13,28],
+"classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8":[7,0,0,12,28],
+"classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd":[5,0,0,13,35],
+"classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd":[7,0,0,12,35],
+"classgridfire_1_1_adaptive_engine_view.html#a3247c1e6a76de5622223ee7b5ca3452a":[5,0,0,13,18],
+"classgridfire_1_1_adaptive_engine_view.html#a3247c1e6a76de5622223ee7b5ca3452a":[7,0,0,12,18],
+"classgridfire_1_1_adaptive_engine_view.html#a3c1e27b45051c4ba481a2b87513982ed":[5,0,0,13,7],
+"classgridfire_1_1_adaptive_engine_view.html#a3c1e27b45051c4ba481a2b87513982ed":[7,0,0,12,7],
+"classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44":[5,0,0,13,29],
+"classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44":[7,0,0,12,29],
+"classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8":[5,0,0,13,39],
+"classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8":[7,0,0,12,39],
+"classgridfire_1_1_adaptive_engine_view.html#a57a218c5a145f589531777c8615b7408":[5,0,0,13,23],
+"classgridfire_1_1_adaptive_engine_view.html#a57a218c5a145f589531777c8615b7408":[7,0,0,12,23],
+"classgridfire_1_1_adaptive_engine_view.html#a5d1b50afd2fba6af75e976a4f9c9dcbc":[5,0,0,13,6],
+"classgridfire_1_1_adaptive_engine_view.html#a5d1b50afd2fba6af75e976a4f9c9dcbc":[7,0,0,12,6],
+"classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103":[5,0,0,13,2],
+"classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103":[7,0,0,12,2],
+"classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093":[5,0,0,13,44],
+"classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093":[7,0,0,12,44],
+"classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e":[5,0,0,13,41],
+"classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e":[7,0,0,12,41],
+"classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1":[5,0,0,13,26],
+"classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1":[7,0,0,12,26],
+"classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3":[5,0,0,13,31],
+"classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3":[7,0,0,12,31],
+"classgridfire_1_1_adaptive_engine_view.html#a7b8b3a786b973e4383e721358e61b7ed":[5,0,0,13,12],
+"classgridfire_1_1_adaptive_engine_view.html#a7b8b3a786b973e4383e721358e61b7ed":[7,0,0,12,12],
+"classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019":[5,0,0,13,30],
+"classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019":[7,0,0,12,30],
+"classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c":[5,0,0,13,9],
+"classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c":[7,0,0,12,9],
+"classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d":[5,0,0,13,10],
+"classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d":[7,0,0,12,10],
+"classgridfire_1_1_adaptive_engine_view.html#a8da7664cf483cba7f979f855a74c3559":[5,0,0,13,14],
+"classgridfire_1_1_adaptive_engine_view.html#a8da7664cf483cba7f979f855a74c3559":[7,0,0,12,14],
+"classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101":[5,0,0,13,27],
+"classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101":[7,0,0,12,27],
+"classgridfire_1_1_adaptive_engine_view.html#a95fbfb7f2bdbf80195f1ea0aff8d62fb":[5,0,0,13,11],
+"classgridfire_1_1_adaptive_engine_view.html#a95fbfb7f2bdbf80195f1ea0aff8d62fb":[7,0,0,12,11],
+"classgridfire_1_1_adaptive_engine_view.html#aa861db5f6fc4e85fb51f524e4e1367c6":[5,0,0,13,21],
+"classgridfire_1_1_adaptive_engine_view.html#aa861db5f6fc4e85fb51f524e4e1367c6":[7,0,0,12,21],
+"classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b":[5,0,0,13,34],
+"classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b":[7,0,0,12,34],
+"classgridfire_1_1_adaptive_engine_view.html#ab5397d217039f096acededd4d2779780":[5,0,0,13,5],
+"classgridfire_1_1_adaptive_engine_view.html#ab5397d217039f096acededd4d2779780":[7,0,0,12,5],
+"classgridfire_1_1_adaptive_engine_view.html#ab5ab06941bf6d97007d0a76658bf2aa6":[5,0,0,13,37],
+"classgridfire_1_1_adaptive_engine_view.html#ab5ab06941bf6d97007d0a76658bf2aa6":[7,0,0,12,37],
+"classgridfire_1_1_adaptive_engine_view.html#abb811382522c31f6456787edd4f59ace":[5,0,0,13,22],
+"classgridfire_1_1_adaptive_engine_view.html#abb811382522c31f6456787edd4f59ace":[7,0,0,12,22],
+"classgridfire_1_1_adaptive_engine_view.html#abe2ca6426e10cc6a10090eecf7098dbe":[5,0,0,13,24],
+"classgridfire_1_1_adaptive_engine_view.html#abe2ca6426e10cc6a10090eecf7098dbe":[7,0,0,12,24],
+"classgridfire_1_1_adaptive_engine_view.html#ac5545d546166de94514871d7ad7b8669":[5,0,0,13,8],
+"classgridfire_1_1_adaptive_engine_view.html#ac5545d546166de94514871d7ad7b8669":[7,0,0,12,8],
+"classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193":[5,0,0,13,42],
+"classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193":[7,0,0,12,42],
+"classgridfire_1_1_adaptive_engine_view.html#ac674338ddcbae4c33dd84b0441631806":[5,0,0,13,3],
+"classgridfire_1_1_adaptive_engine_view.html#ac674338ddcbae4c33dd84b0441631806":[7,0,0,12,3],
+"classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1":[5,0,0,13,19],
+"classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1":[7,0,0,12,19],
+"classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88":[5,0,0,13,25],
+"classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88":[7,0,0,12,25],
+"classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455":[5,0,0,13,4],
+"classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455":[7,0,0,12,4],
+"classgridfire_1_1_adaptive_engine_view.html#adedc8547568d643473bdfcc86040b488":[5,0,0,13,33],
+"classgridfire_1_1_adaptive_engine_view.html#adedc8547568d643473bdfcc86040b488":[7,0,0,12,33],
+"classgridfire_1_1_adaptive_engine_view.html#adf3b8a5734983509ca02b7a1a480119f":[5,0,0,13,17],
+"classgridfire_1_1_adaptive_engine_view.html#adf3b8a5734983509ca02b7a1a480119f":[7,0,0,12,17],
+"classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40":[5,0,0,13,36],
+"classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40":[7,0,0,12,36],
+"classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c":[5,0,0,13,16],
+"classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c":[7,0,0,12,16],
+"classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940":[5,0,0,13,38],
+"classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940":[7,0,0,12,38],
+"classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3":[5,0,0,13,1],
+"classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3":[7,0,0,12,1],
+"classgridfire_1_1_defined_engine_view.html":[5,0,0,14],
+"classgridfire_1_1_defined_engine_view.html":[7,0,0,13],
+"classgridfire_1_1_defined_engine_view.html#a06aca977aafb4784fd167acb8c02dda2":[5,0,0,14,1],
+"classgridfire_1_1_defined_engine_view.html#a06aca977aafb4784fd167acb8c02dda2":[7,0,0,13,1],
+"classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460":[5,0,0,14,24],
+"classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460":[7,0,0,13,24],
+"classgridfire_1_1_defined_engine_view.html#a18f46d92ea7e04068ad9e7af4ed605a8":[5,0,0,14,16],
+"classgridfire_1_1_defined_engine_view.html#a18f46d92ea7e04068ad9e7af4ed605a8":[7,0,0,13,16],
+"classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211":[5,0,0,14,12],
+"classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211":[7,0,0,13,12],
+"classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382":[5,0,0,14,32],
+"classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382":[7,0,0,13,32],
+"classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873":[5,0,0,14,19],
+"classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873":[7,0,0,13,19],
+"classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c":[5,0,0,14,13],
+"classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c":[7,0,0,13,13],
+"classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3":[5,0,0,14,33],
+"classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3":[7,0,0,13,33],
+"classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0":[5,0,0,14,28],
+"classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0":[7,0,0,13,28],
+"classgridfire_1_1_defined_engine_view.html#a5f9db5a9287aa03b2fa4d516e9a576b6":[5,0,0,14,11],
+"classgridfire_1_1_defined_engine_view.html#a5f9db5a9287aa03b2fa4d516e9a576b6":[7,0,0,13,11],
+"classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843":[5,0,0,14,21],
+"classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843":[7,0,0,13,21],
+"classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae":[5,0,0,14,30],
+"classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae":[7,0,0,13,30],
+"classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9":[5,0,0,14,25],
+"classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9":[7,0,0,13,25],
+"classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484":[5,0,0,14,9],
+"classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484":[7,0,0,13,9],
+"classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195":[5,0,0,14,31],
+"classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195":[7,0,0,13,31],
+"classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2":[5,0,0,14,20],
+"classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2":[7,0,0,13,20],
+"classgridfire_1_1_defined_engine_view.html#a74298377d0432ae3d577be0e9e6052b3":[5,0,0,14,2],
+"classgridfire_1_1_defined_engine_view.html#a74298377d0432ae3d577be0e9e6052b3":[7,0,0,13,2],
+"classgridfire_1_1_defined_engine_view.html#a7bcf169ba1e12e3356d4bcc27c3fc554":[5,0,0,14,14],
+"classgridfire_1_1_defined_engine_view.html#a7bcf169ba1e12e3356d4bcc27c3fc554":[7,0,0,13,14],
+"classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87":[5,0,0,14,18],
+"classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87":[7,0,0,13,18],
+"classgridfire_1_1_defined_engine_view.html#a824fe65ae22fa856051f2652764a0bb6":[5,0,0,14,29],
+"classgridfire_1_1_defined_engine_view.html#a824fe65ae22fa856051f2652764a0bb6":[7,0,0,13,29],
+"classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92":[5,0,0,14,0],
+"classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92":[7,0,0,13,0],
+"classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985":[5,0,0,14,6],
+"classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985":[7,0,0,13,6],
+"classgridfire_1_1_defined_engine_view.html#aa49532266ff959ac66f501336f102ce8":[5,0,0,14,10],
+"classgridfire_1_1_defined_engine_view.html#aa49532266ff959ac66f501336f102ce8":[7,0,0,13,10],
+"classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1":[5,0,0,14,22],
+"classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1":[7,0,0,13,22],
+"classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68":[5,0,0,14,5],
+"classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68":[7,0,0,13,5],
+"classgridfire_1_1_defined_engine_view.html#ab80eadd713a40e9263e5231737e956d0":[5,0,0,14,7],
+"classgridfire_1_1_defined_engine_view.html#ab80eadd713a40e9263e5231737e956d0":[7,0,0,13,7],
+"classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258":[5,0,0,14,26],
+"classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258":[7,0,0,13,26],
+"classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e":[5,0,0,14,35],
+"classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e":[7,0,0,13,35],
+"classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6":[5,0,0,14,8],
+"classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6":[7,0,0,13,8],
+"classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e":[5,0,0,14,4],
+"classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e":[7,0,0,13,4],
+"classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae":[5,0,0,14,27],
+"classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae":[7,0,0,13,27],
+"classgridfire_1_1_defined_engine_view.html#af1843cfd2a95bfa46ab40d4c4de11ef9":[5,0,0,14,17],
+"classgridfire_1_1_defined_engine_view.html#af1843cfd2a95bfa46ab40d4c4de11ef9":[7,0,0,13,17],
+"classgridfire_1_1_defined_engine_view.html#af273b29d7700cdc34da6e2712fffc5c2":[5,0,0,14,3],
+"classgridfire_1_1_defined_engine_view.html#af273b29d7700cdc34da6e2712fffc5c2":[7,0,0,13,3],
+"classgridfire_1_1_defined_engine_view.html#af3b355ffcda6a8f2841184cc56e3761a":[5,0,0,14,15],
+"classgridfire_1_1_defined_engine_view.html#af3b355ffcda6a8f2841184cc56e3761a":[7,0,0,13,15],
+"classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a":[5,0,0,14,23],
+"classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a":[7,0,0,13,23],
+"classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd":[5,0,0,14,34],
+"classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd":[7,0,0,13,34],
+"classgridfire_1_1_dynamic_engine.html":[5,0,0,15],
+"classgridfire_1_1_dynamic_engine.html":[7,0,0,14],
+"classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9":[5,0,0,15,5],
+"classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9":[7,0,0,14,5],
+"classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd":[5,0,0,15,3],
+"classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd":[7,0,0,14,3],
+"classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e":[5,0,0,15,15],
+"classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e":[7,0,0,14,15],
+"classgridfire_1_1_dynamic_engine.html#a21d15531309456ee83f7675251e7a1bf":[5,0,0,15,2],
+"classgridfire_1_1_dynamic_engine.html#a21d15531309456ee83f7675251e7a1bf":[7,0,0,14,2],
+"classgridfire_1_1_dynamic_engine.html#a25c040d3078f6ff2ef38f733eb68f1fa":[5,0,0,15,9],
+"classgridfire_1_1_dynamic_engine.html#a25c040d3078f6ff2ef38f733eb68f1fa":[7,0,0,14,9],
+"classgridfire_1_1_dynamic_engine.html#a264bd5a8891c8c5f0dff32867effe547":[5,0,0,15,0],
+"classgridfire_1_1_dynamic_engine.html#a264bd5a8891c8c5f0dff32867effe547":[7,0,0,14,0],
+"classgridfire_1_1_dynamic_engine.html#a39cf5b738eea0a275bf8c0eb5789fab3":[5,0,0,15,1],
+"classgridfire_1_1_dynamic_engine.html#a39cf5b738eea0a275bf8c0eb5789fab3":[7,0,0,14,1],
+"classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd":[5,0,0,15,18],
+"classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd":[7,0,0,14,18],
+"classgridfire_1_1_dynamic_engine.html#a49025489901e22a20cdf99b455ff2ff0":[5,0,0,15,17],
+"classgridfire_1_1_dynamic_engine.html#a49025489901e22a20cdf99b455ff2ff0":[7,0,0,14,17],
+"classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf":[5,0,0,15,16],
+"classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf":[7,0,0,14,16],
+"classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a":[5,0,0,15,14],
+"classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a":[7,0,0,14,14],
+"classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0":[5,0,0,15,8],
+"classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0":[7,0,0,14,8],
+"classgridfire_1_1_dynamic_engine.html#a88dbf350dc0ea3e2b64d825f489e0d60":[5,0,0,15,6],
+"classgridfire_1_1_dynamic_engine.html#a88dbf350dc0ea3e2b64d825f489e0d60":[7,0,0,14,6]
 };
diff --git a/docs/html/navtreeindex1.js b/docs/html/navtreeindex1.js
index 8feb42ed..ad66521f 100644
--- a/docs/html/navtreeindex1.js
+++ b/docs/html/navtreeindex1.js
@@ -1,253 +1,253 @@
 var NAVTREEINDEX1 =
 {
-"classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f":[7,0,0,11,11],
-"classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f":[5,0,0,12,16],
-"classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f":[7,0,0,11,16],
-"classgridfire_1_1_engine.html":[5,0,0,13],
-"classgridfire_1_1_engine.html":[7,0,0,12],
-"classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3":[5,0,0,13,2],
-"classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3":[7,0,0,12,2],
-"classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037":[5,0,0,13,0],
-"classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037":[7,0,0,12,0],
-"classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb":[5,0,0,13,1],
-"classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb":[7,0,0,12,1],
-"classgridfire_1_1_engine_view.html":[5,0,0,14],
-"classgridfire_1_1_engine_view.html":[7,0,0,13],
-"classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74":[5,0,0,14,0],
-"classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74":[7,0,0,13,0],
-"classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6":[5,0,0,14,1],
-"classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6":[7,0,0,13,1],
-"classgridfire_1_1_file_defined_engine_view.html":[5,0,0,15],
-"classgridfire_1_1_file_defined_engine_view.html":[7,0,0,14],
-"classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500":[5,0,0,15,8],
-"classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500":[7,0,0,14,8],
-"classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b":[5,0,0,15,6],
-"classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b":[7,0,0,14,6],
-"classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187":[5,0,0,15,0],
-"classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187":[7,0,0,14,0],
-"classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362":[5,0,0,15,5],
-"classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362":[7,0,0,14,5],
-"classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd":[5,0,0,15,2],
-"classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd":[7,0,0,14,2],
-"classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432":[5,0,0,15,7],
-"classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432":[7,0,0,14,7],
-"classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08":[5,0,0,15,1],
-"classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08":[7,0,0,14,1],
-"classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718":[5,0,0,15,3],
-"classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718":[7,0,0,14,3],
-"classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f":[5,0,0,15,4],
-"classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f":[7,0,0,14,4],
-"classgridfire_1_1_graph_engine.html":[5,0,0,16],
-"classgridfire_1_1_graph_engine.html":[7,0,0,15],
-"classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f":[5,0,0,16,36],
-"classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f":[7,0,0,15,36],
-"classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755":[5,0,0,16,14],
-"classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755":[7,0,0,15,14],
-"classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28":[5,0,0,16,13],
-"classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28":[7,0,0,15,13],
-"classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767":[5,0,0,16,28],
-"classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767":[7,0,0,15,28],
-"classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e":[5,0,0,16,56],
-"classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e":[7,0,0,15,56],
-"classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4":[5,0,0,16,24],
-"classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4":[7,0,0,15,24],
-"classgridfire_1_1_graph_engine.html#a17774cd9ffcf1ba94019df766a0984a0":[5,0,0,16,12],
-"classgridfire_1_1_graph_engine.html#a17774cd9ffcf1ba94019df766a0984a0":[7,0,0,15,12],
-"classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de":[5,0,0,16,73],
-"classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de":[7,0,0,15,73],
-"classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06":[5,0,0,16,58],
-"classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06":[7,0,0,15,58],
-"classgridfire_1_1_graph_engine.html#a1e7e851dfa21d41c2dc533ba56fc4c7b":[5,0,0,16,5],
-"classgridfire_1_1_graph_engine.html#a1e7e851dfa21d41c2dc533ba56fc4c7b":[7,0,0,15,5],
-"classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891":[5,0,0,16,59],
-"classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891":[7,0,0,15,59],
-"classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567":[5,0,0,16,40],
-"classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567":[7,0,0,15,40],
-"classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f":[5,0,0,16,39],
-"classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f":[7,0,0,15,39],
-"classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746":[5,0,0,16,17],
-"classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746":[7,0,0,15,17],
-"classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876":[5,0,0,16,68],
-"classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876":[7,0,0,15,68],
-"classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910":[5,0,0,16,60],
-"classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910":[7,0,0,15,60],
-"classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c":[5,0,0,16,25],
-"classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c":[7,0,0,15,25],
-"classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827":[5,0,0,16,63],
-"classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827":[7,0,0,15,63],
-"classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc":[5,0,0,16,74],
-"classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc":[7,0,0,15,74],
-"classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e":[5,0,0,16,64],
-"classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e":[7,0,0,15,64],
-"classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0":[5,0,0,16,47],
-"classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0":[7,0,0,15,47],
-"classgridfire_1_1_graph_engine.html#a39d9838ed40bea71ee6c552bb5969026":[5,0,0,16,4],
-"classgridfire_1_1_graph_engine.html#a39d9838ed40bea71ee6c552bb5969026":[7,0,0,15,4],
-"classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18":[5,0,0,16,55],
-"classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18":[7,0,0,15,55],
-"classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197":[5,0,0,16,50],
-"classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197":[7,0,0,15,50],
-"classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391":[5,0,0,16,41],
-"classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391":[7,0,0,15,41],
-"classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53":[5,0,0,16,61],
-"classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53":[7,0,0,15,61],
-"classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80":[5,0,0,16,70],
-"classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80":[7,0,0,15,70],
-"classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6":[5,0,0,16,52],
-"classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6":[7,0,0,15,52],
-"classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3":[5,0,0,16,65],
-"classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3":[7,0,0,15,65],
-"classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3":[5,0,0,16,66],
-"classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3":[7,0,0,15,66],
-"classgridfire_1_1_graph_engine.html#a5e96b5a0b34c8932f0e14eabda57f1a4":[5,0,0,16,11],
-"classgridfire_1_1_graph_engine.html#a5e96b5a0b34c8932f0e14eabda57f1a4":[7,0,0,15,11],
-"classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581":[5,0,0,16,33],
-"classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581":[7,0,0,15,33],
-"classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a":[5,0,0,16,30],
-"classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a":[7,0,0,15,30],
-"classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152":[5,0,0,16,34],
-"classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152":[7,0,0,15,34],
-"classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1":[5,0,0,16,48],
-"classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1":[7,0,0,15,48],
-"classgridfire_1_1_graph_engine.html#a71a3d1181b90c3becdc5d9a3da05b9c9":[5,0,0,16,6],
-"classgridfire_1_1_graph_engine.html#a71a3d1181b90c3becdc5d9a3da05b9c9":[7,0,0,15,6],
-"classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01":[5,0,0,16,57],
-"classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01":[7,0,0,15,57],
-"classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6":[5,0,0,16,54],
-"classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6":[7,0,0,15,54],
-"classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95":[5,0,0,16,19],
-"classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95":[7,0,0,15,19],
-"classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9":[5,0,0,16,26],
-"classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9":[7,0,0,15,26],
-"classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5":[5,0,0,16,46],
-"classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5":[7,0,0,15,46],
-"classgridfire_1_1_graph_engine.html#a914f6abc61805cddaebcb8f3cf470dda":[5,0,0,16,32],
-"classgridfire_1_1_graph_engine.html#a914f6abc61805cddaebcb8f3cf470dda":[7,0,0,15,32],
-"classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f":[5,0,0,16,10],
-"classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f":[7,0,0,15,10],
-"classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd":[5,0,0,16,42],
-"classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd":[7,0,0,15,42],
-"classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc":[5,0,0,16,62],
-"classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc":[7,0,0,15,62],
-"classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889":[5,0,0,16,45],
-"classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889":[7,0,0,15,45],
-"classgridfire_1_1_graph_engine.html#a9687eef88c97eeb7f8680acb230f8ac1":[5,0,0,16,22],
-"classgridfire_1_1_graph_engine.html#a9687eef88c97eeb7f8680acb230f8ac1":[7,0,0,15,22],
-"classgridfire_1_1_graph_engine.html#a97f98706b51fbe0d167ed81ffe58c438":[5,0,0,16,9],
-"classgridfire_1_1_graph_engine.html#a97f98706b51fbe0d167ed81ffe58c438":[7,0,0,15,9],
-"classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c":[5,0,0,16,49],
-"classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c":[7,0,0,15,49],
-"classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b":[5,0,0,16,35],
-"classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b":[7,0,0,15,35],
-"classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081":[5,0,0,16,16],
-"classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081":[7,0,0,15,16],
-"classgridfire_1_1_graph_engine.html#aaf4d54e4b774ab8ec8eabec006579d31":[5,0,0,16,7],
-"classgridfire_1_1_graph_engine.html#aaf4d54e4b774ab8ec8eabec006579d31":[7,0,0,15,7],
-"classgridfire_1_1_graph_engine.html#acb7c4f5108b0efeae48ad15598e808c3":[5,0,0,16,67],
-"classgridfire_1_1_graph_engine.html#acb7c4f5108b0efeae48ad15598e808c3":[7,0,0,15,67],
-"classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f":[5,0,0,16,51],
-"classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f":[7,0,0,15,51],
-"classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be":[5,0,0,16,53],
-"classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be":[7,0,0,15,53],
-"classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119":[5,0,0,16,21],
-"classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119":[7,0,0,15,21],
-"classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24":[5,0,0,16,72],
-"classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24":[7,0,0,15,72],
-"classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da":[5,0,0,16,27],
-"classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da":[7,0,0,15,27],
-"classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7":[5,0,0,16,71],
-"classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7":[7,0,0,15,71],
-"classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490":[5,0,0,16,44],
-"classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490":[7,0,0,15,44],
-"classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929":[5,0,0,16,20],
-"classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929":[7,0,0,15,20],
-"classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44":[5,0,0,16,29],
-"classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44":[7,0,0,15,29],
-"classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0":[5,0,0,16,38],
-"classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0":[7,0,0,15,38],
-"classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e":[5,0,0,16,43],
-"classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e":[7,0,0,15,43],
-"classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38":[5,0,0,16,23],
-"classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38":[7,0,0,15,23],
-"classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa":[5,0,0,16,18],
-"classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa":[7,0,0,15,18],
-"classgridfire_1_1_graph_engine.html#aef8f6bde24d27345067b71084330c7da":[5,0,0,16,31],
-"classgridfire_1_1_graph_engine.html#aef8f6bde24d27345067b71084330c7da":[7,0,0,15,31],
-"classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5":[5,0,0,16,37],
-"classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5":[7,0,0,15,37],
-"classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210":[5,0,0,16,69],
-"classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210":[7,0,0,15,69],
-"classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7":[5,0,0,16,15],
-"classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7":[7,0,0,15,15],
-"classgridfire_1_1_graph_engine.html#af41df9ce979b6410e12642cb093916c9":[5,0,0,16,8],
-"classgridfire_1_1_graph_engine.html#af41df9ce979b6410e12642cb093916c9":[7,0,0,15,8],
-"classgridfire_1_1_graph_engine.html#afad967546b611d9c005268760feb75d5":[5,0,0,16,3],
-"classgridfire_1_1_graph_engine.html#afad967546b611d9c005268760feb75d5":[7,0,0,15,3],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html":[5,0,0,16,0],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html":[7,0,0,15,0],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf":[5,0,0,16,0,0],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf":[7,0,0,15,0,0],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e":[5,0,0,16,0,4],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e":[7,0,0,15,0,4],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d":[5,0,0,16,0,5],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d":[7,0,0,15,0,5],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4":[5,0,0,16,0,3],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4":[7,0,0,15,0,3],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a98ed8b450f7868f55e8362a848a4710d":[5,0,0,16,0,6],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a98ed8b450f7868f55e8362a848a4710d":[7,0,0,15,0,6],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0":[5,0,0,16,0,2],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0":[7,0,0,15,0,2],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4":[5,0,0,16,0,1],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4":[7,0,0,15,0,1],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html":[5,0,0,17],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html":[7,0,0,16],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93":[5,0,0,17,43],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93":[7,0,0,16,43],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235":[5,0,0,17,33],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235":[7,0,0,16,33],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f":[5,0,0,17,4],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f":[7,0,0,16,4],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f":[5,0,0,17,35],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f":[7,0,0,16,35],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc":[5,0,0,17,11],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc":[7,0,0,16,11],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6":[5,0,0,17,49],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6":[7,0,0,16,49],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888":[5,0,0,17,17],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888":[7,0,0,16,17],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1":[5,0,0,17,16],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1":[7,0,0,16,16],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681":[5,0,0,17,3],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681":[7,0,0,16,3],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a38b4f0373c3bd81503889650c0bb69bb":[5,0,0,17,46],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a38b4f0373c3bd81503889650c0bb69bb":[7,0,0,16,46],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c5fcb8e3396d74359fd601554c9ffa9":[5,0,0,17,36],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c5fcb8e3396d74359fd601554c9ffa9":[7,0,0,16,36],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e":[5,0,0,17,18],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e":[7,0,0,16,18],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb":[5,0,0,17,39],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb":[7,0,0,16,39],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8":[5,0,0,17,41],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8":[7,0,0,16,41],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d":[5,0,0,17,12],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d":[7,0,0,16,12],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a510b920dea726aef859ac1f6d051807e":[5,0,0,17,26],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a510b920dea726aef859ac1f6d051807e":[7,0,0,16,26],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a53862719dd73f98bc69eecde090cf655":[5,0,0,17,42],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a53862719dd73f98bc69eecde090cf655":[7,0,0,16,42],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a54ca8004fbd8d6d3ea6f67efeb5dbc8d":[5,0,0,17,27],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a54ca8004fbd8d6d3ea6f67efeb5dbc8d":[7,0,0,16,27],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a560612347bbd5b7b380e990624d01105":[5,0,0,17,25],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a560612347bbd5b7b380e990624d01105":[7,0,0,16,25],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8":[5,0,0,17,40],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8":[7,0,0,16,40],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80":[5,0,0,17,21],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80":[7,0,0,16,21],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8":[5,0,0,17,37],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8":[7,0,0,16,37],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e":[5,0,0,17,48],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e":[7,0,0,16,48],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb":[5,0,0,17,9],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb":[7,0,0,16,9],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044":[5,0,0,17,8]
+"classgridfire_1_1_dynamic_engine.html#a8f66fb76c9f983ee93bf8b95cdc85596":[5,0,0,15,10],
+"classgridfire_1_1_dynamic_engine.html#a8f66fb76c9f983ee93bf8b95cdc85596":[7,0,0,14,10],
+"classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398":[5,0,0,15,13],
+"classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398":[7,0,0,14,13],
+"classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a":[5,0,0,15,19],
+"classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a":[7,0,0,14,19],
+"classgridfire_1_1_dynamic_engine.html#ad19c8451b6f624e2938f771cc067d5c1":[5,0,0,15,12],
+"classgridfire_1_1_dynamic_engine.html#ad19c8451b6f624e2938f771cc067d5c1":[7,0,0,14,12],
+"classgridfire_1_1_dynamic_engine.html#ae7114f5ebc6667b5e5971c0450ed03d9":[5,0,0,15,11],
+"classgridfire_1_1_dynamic_engine.html#ae7114f5ebc6667b5e5971c0450ed03d9":[7,0,0,14,11],
+"classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f":[5,0,0,15,4],
+"classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f":[7,0,0,14,4],
+"classgridfire_1_1_dynamic_engine.html#af496e04f7be9a0a51ac65dc95f901ffe":[5,0,0,15,7],
+"classgridfire_1_1_dynamic_engine.html#af496e04f7be9a0a51ac65dc95f901ffe":[7,0,0,14,7],
+"classgridfire_1_1_engine.html":[5,0,0,17],
+"classgridfire_1_1_engine.html":[7,0,0,16],
+"classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3":[5,0,0,17,2],
+"classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3":[7,0,0,16,2],
+"classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037":[5,0,0,17,0],
+"classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037":[7,0,0,16,0],
+"classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740":[5,0,0,17,1],
+"classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740":[7,0,0,16,1],
+"classgridfire_1_1_engine_view.html":[5,0,0,18],
+"classgridfire_1_1_engine_view.html":[7,0,0,17],
+"classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74":[5,0,0,18,0],
+"classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74":[7,0,0,17,0],
+"classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6":[5,0,0,18,1],
+"classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6":[7,0,0,17,1],
+"classgridfire_1_1_file_defined_engine_view.html":[5,0,0,19],
+"classgridfire_1_1_file_defined_engine_view.html":[7,0,0,18],
+"classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500":[5,0,0,19,8],
+"classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500":[7,0,0,18,8],
+"classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b":[5,0,0,19,6],
+"classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b":[7,0,0,18,6],
+"classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187":[5,0,0,19,0],
+"classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187":[7,0,0,18,0],
+"classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362":[5,0,0,19,5],
+"classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362":[7,0,0,18,5],
+"classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd":[5,0,0,19,2],
+"classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd":[7,0,0,18,2],
+"classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432":[5,0,0,19,7],
+"classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432":[7,0,0,18,7],
+"classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08":[5,0,0,19,1],
+"classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08":[7,0,0,18,1],
+"classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718":[5,0,0,19,3],
+"classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718":[7,0,0,18,3],
+"classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f":[5,0,0,19,4],
+"classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f":[7,0,0,18,4],
+"classgridfire_1_1_graph_engine.html":[5,0,0,20],
+"classgridfire_1_1_graph_engine.html":[7,0,0,19],
+"classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f":[5,0,0,20,35],
+"classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f":[7,0,0,19,35],
+"classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755":[5,0,0,20,13],
+"classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755":[7,0,0,19,13],
+"classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767":[5,0,0,20,27],
+"classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767":[7,0,0,19,27],
+"classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e":[5,0,0,20,56],
+"classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e":[7,0,0,19,56],
+"classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4":[5,0,0,20,23],
+"classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4":[7,0,0,19,23],
+"classgridfire_1_1_graph_engine.html#a1675859971f0bd2db0650f8da54ed7eb":[5,0,0,20,9],
+"classgridfire_1_1_graph_engine.html#a1675859971f0bd2db0650f8da54ed7eb":[7,0,0,19,9],
+"classgridfire_1_1_graph_engine.html#a16b8cd1b0e19b4d4519596a4e22eaf5c":[5,0,0,20,45],
+"classgridfire_1_1_graph_engine.html#a16b8cd1b0e19b4d4519596a4e22eaf5c":[7,0,0,19,45],
+"classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de":[5,0,0,20,75],
+"classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de":[7,0,0,19,75],
+"classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06":[5,0,0,20,59],
+"classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06":[7,0,0,19,59],
+"classgridfire_1_1_graph_engine.html#a1d5f6a3f217af7f4d0f95bdf7916b774":[5,0,0,20,58],
+"classgridfire_1_1_graph_engine.html#a1d5f6a3f217af7f4d0f95bdf7916b774":[7,0,0,19,58],
+"classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891":[5,0,0,20,61],
+"classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891":[7,0,0,19,61],
+"classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567":[5,0,0,20,39],
+"classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567":[7,0,0,19,39],
+"classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f":[5,0,0,20,38],
+"classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f":[7,0,0,19,38],
+"classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746":[5,0,0,20,16],
+"classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746":[7,0,0,19,16],
+"classgridfire_1_1_graph_engine.html#a2bea809d2efb3a5e7cc065ec80baebce":[5,0,0,20,10],
+"classgridfire_1_1_graph_engine.html#a2bea809d2efb3a5e7cc065ec80baebce":[7,0,0,19,10],
+"classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876":[5,0,0,20,70],
+"classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876":[7,0,0,19,70],
+"classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910":[5,0,0,20,62],
+"classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910":[7,0,0,19,62],
+"classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827":[5,0,0,20,65],
+"classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827":[7,0,0,19,65],
+"classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc":[5,0,0,20,76],
+"classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc":[7,0,0,19,76],
+"classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e":[5,0,0,20,66],
+"classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e":[7,0,0,19,66],
+"classgridfire_1_1_graph_engine.html#a38aaafb1d9a6548bc8e8cb672417bbbe":[5,0,0,20,3],
+"classgridfire_1_1_graph_engine.html#a38aaafb1d9a6548bc8e8cb672417bbbe":[7,0,0,19,3],
+"classgridfire_1_1_graph_engine.html#a3a03fbd767f495ca667f23789b07c293":[5,0,0,20,4],
+"classgridfire_1_1_graph_engine.html#a3a03fbd767f495ca667f23789b07c293":[7,0,0,19,4],
+"classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18":[5,0,0,20,55],
+"classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18":[7,0,0,19,55],
+"classgridfire_1_1_graph_engine.html#a3b7f3ba85821165f58f168bc68f86b2d":[5,0,0,20,26],
+"classgridfire_1_1_graph_engine.html#a3b7f3ba85821165f58f168bc68f86b2d":[7,0,0,19,26],
+"classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197":[5,0,0,20,50],
+"classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197":[7,0,0,19,50],
+"classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391":[5,0,0,20,40],
+"classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391":[7,0,0,19,40],
+"classgridfire_1_1_graph_engine.html#a47df5a9c448dd1ce8654df819a6cc8ff":[5,0,0,20,30],
+"classgridfire_1_1_graph_engine.html#a47df5a9c448dd1ce8654df819a6cc8ff":[7,0,0,19,30],
+"classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53":[5,0,0,20,63],
+"classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53":[7,0,0,19,63],
+"classgridfire_1_1_graph_engine.html#a4e0bbc6448999e2ef06879270b7d3dec":[5,0,0,20,21],
+"classgridfire_1_1_graph_engine.html#a4e0bbc6448999e2ef06879270b7d3dec":[7,0,0,19,21],
+"classgridfire_1_1_graph_engine.html#a514cc6b5482d6a27902975da17b5e39e":[5,0,0,20,5],
+"classgridfire_1_1_graph_engine.html#a514cc6b5482d6a27902975da17b5e39e":[7,0,0,19,5],
+"classgridfire_1_1_graph_engine.html#a52288e2629609c8438a3c9bc3f910016":[5,0,0,20,47],
+"classgridfire_1_1_graph_engine.html#a52288e2629609c8438a3c9bc3f910016":[7,0,0,19,47],
+"classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80":[5,0,0,20,72],
+"classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80":[7,0,0,19,72],
+"classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6":[5,0,0,20,52],
+"classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6":[7,0,0,19,52],
+"classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3":[5,0,0,20,67],
+"classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3":[7,0,0,19,67],
+"classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3":[5,0,0,20,68],
+"classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3":[7,0,0,19,68],
+"classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a":[5,0,0,20,29],
+"classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a":[7,0,0,19,29],
+"classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1":[5,0,0,20,48],
+"classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1":[7,0,0,19,48],
+"classgridfire_1_1_graph_engine.html#a7acc98647427981a9602d251c9288012":[5,0,0,20,15],
+"classgridfire_1_1_graph_engine.html#a7acc98647427981a9602d251c9288012":[7,0,0,19,15],
+"classgridfire_1_1_graph_engine.html#a7dde968244f3c4934c7738445c709232":[5,0,0,20,32],
+"classgridfire_1_1_graph_engine.html#a7dde968244f3c4934c7738445c709232":[7,0,0,19,32],
+"classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01":[5,0,0,20,57],
+"classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01":[7,0,0,19,57],
+"classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6":[5,0,0,20,54],
+"classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6":[7,0,0,19,54],
+"classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95":[5,0,0,20,18],
+"classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95":[7,0,0,19,18],
+"classgridfire_1_1_graph_engine.html#a8873331f5ae40a3f640dedbbed685ed9":[5,0,0,20,6],
+"classgridfire_1_1_graph_engine.html#a8873331f5ae40a3f640dedbbed685ed9":[7,0,0,19,6],
+"classgridfire_1_1_graph_engine.html#a8ab5308629b8707922e5954776254aa6":[5,0,0,20,24],
+"classgridfire_1_1_graph_engine.html#a8ab5308629b8707922e5954776254aa6":[7,0,0,19,24],
+"classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9":[5,0,0,20,25],
+"classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9":[7,0,0,19,25],
+"classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5":[5,0,0,20,46],
+"classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5":[7,0,0,19,46],
+"classgridfire_1_1_graph_engine.html#a8ff064c9996772281984f88ee492d04a":[5,0,0,20,60],
+"classgridfire_1_1_graph_engine.html#a8ff064c9996772281984f88ee492d04a":[7,0,0,19,60],
+"classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd":[5,0,0,20,41],
+"classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd":[7,0,0,19,41],
+"classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc":[5,0,0,20,64],
+"classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc":[7,0,0,19,64],
+"classgridfire_1_1_graph_engine.html#a9340db538a507b96e186b60ba0450205":[5,0,0,20,14],
+"classgridfire_1_1_graph_engine.html#a9340db538a507b96e186b60ba0450205":[7,0,0,19,14],
+"classgridfire_1_1_graph_engine.html#a972d0705351167dc889a2f6c442e7a93":[5,0,0,20,11],
+"classgridfire_1_1_graph_engine.html#a972d0705351167dc889a2f6c442e7a93":[7,0,0,19,11],
+"classgridfire_1_1_graph_engine.html#a9ac5893030802b0b846552949e866340":[5,0,0,20,77],
+"classgridfire_1_1_graph_engine.html#a9ac5893030802b0b846552949e866340":[7,0,0,19,77],
+"classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c":[5,0,0,20,49],
+"classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c":[7,0,0,19,49],
+"classgridfire_1_1_graph_engine.html#a9e426e6c178dd80bd58090489d3b2be9":[5,0,0,20,31],
+"classgridfire_1_1_graph_engine.html#a9e426e6c178dd80bd58090489d3b2be9":[7,0,0,19,31],
+"classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b":[5,0,0,20,34],
+"classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b":[7,0,0,19,34],
+"classgridfire_1_1_graph_engine.html#ab29ef3225c8fcda012b10765df064b63":[5,0,0,20,44],
+"classgridfire_1_1_graph_engine.html#ab29ef3225c8fcda012b10765df064b63":[7,0,0,19,44],
+"classgridfire_1_1_graph_engine.html#accf01734524a706ad03c9b9898af54b3":[5,0,0,20,12],
+"classgridfire_1_1_graph_engine.html#accf01734524a706ad03c9b9898af54b3":[7,0,0,19,12],
+"classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f":[5,0,0,20,51],
+"classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f":[7,0,0,19,51],
+"classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be":[5,0,0,20,53],
+"classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be":[7,0,0,19,53],
+"classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24":[5,0,0,20,74],
+"classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24":[7,0,0,19,74],
+"classgridfire_1_1_graph_engine.html#ad3b97595871d1f62ee7f4726b601ebef":[5,0,0,20,69],
+"classgridfire_1_1_graph_engine.html#ad3b97595871d1f62ee7f4726b601ebef":[7,0,0,19,69],
+"classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7":[5,0,0,20,73],
+"classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7":[7,0,0,19,73],
+"classgridfire_1_1_graph_engine.html#ad90a2d770ebf098f0d6d5f5339961e95":[5,0,0,20,33],
+"classgridfire_1_1_graph_engine.html#ad90a2d770ebf098f0d6d5f5339961e95":[7,0,0,19,33],
+"classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490":[5,0,0,20,43],
+"classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490":[7,0,0,19,43],
+"classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929":[5,0,0,20,19],
+"classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929":[7,0,0,19,19],
+"classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44":[5,0,0,20,28],
+"classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44":[7,0,0,19,28],
+"classgridfire_1_1_graph_engine.html#ae0c9159cc3467fd85d1a5895f1786c47":[5,0,0,20,8],
+"classgridfire_1_1_graph_engine.html#ae0c9159cc3467fd85d1a5895f1786c47":[7,0,0,19,8],
+"classgridfire_1_1_graph_engine.html#ae11f6267077025ca342e2e263ad87e5e":[5,0,0,20,20],
+"classgridfire_1_1_graph_engine.html#ae11f6267077025ca342e2e263ad87e5e":[7,0,0,19,20],
+"classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0":[5,0,0,20,37],
+"classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0":[7,0,0,19,37],
+"classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e":[5,0,0,20,42],
+"classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e":[7,0,0,19,42],
+"classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38":[5,0,0,20,22],
+"classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38":[7,0,0,19,22],
+"classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa":[5,0,0,20,17],
+"classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa":[7,0,0,19,17],
+"classgridfire_1_1_graph_engine.html#aef12443d7980301d8bb89f4ba4890450":[5,0,0,20,7],
+"classgridfire_1_1_graph_engine.html#aef12443d7980301d8bb89f4ba4890450":[7,0,0,19,7],
+"classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5":[5,0,0,20,36],
+"classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5":[7,0,0,19,36],
+"classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210":[5,0,0,20,71],
+"classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210":[7,0,0,19,71],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html":[5,0,0,20,0],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html":[7,0,0,19,0],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf":[5,0,0,20,0,0],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf":[7,0,0,19,0,0],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e":[5,0,0,20,0,4],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e":[7,0,0,19,0,4],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d":[5,0,0,20,0,5],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d":[7,0,0,19,0,5],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4":[5,0,0,20,0,3],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4":[7,0,0,19,0,3],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a98ed8b450f7868f55e8362a848a4710d":[5,0,0,20,0,6],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a98ed8b450f7868f55e8362a848a4710d":[7,0,0,19,0,6],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0":[5,0,0,20,0,2],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0":[7,0,0,19,0,2],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4":[5,0,0,20,0,1],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4":[7,0,0,19,0,1],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html":[5,0,0,21],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html":[7,0,0,20],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93":[5,0,0,21,43],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93":[7,0,0,20,43],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235":[5,0,0,21,33],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235":[7,0,0,20,33],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a05e45017bbb772c586f483bd527004ee":[5,0,0,21,5],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a05e45017bbb772c586f483bd527004ee":[7,0,0,20,5],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f":[5,0,0,21,4],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f":[7,0,0,20,4],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f":[5,0,0,21,35],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f":[7,0,0,20,35],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a14b0c7ec882b2ad2370f7aa729b9f9":[5,0,0,21,23],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a14b0c7ec882b2ad2370f7aa729b9f9":[7,0,0,20,23],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc":[5,0,0,21,12],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc":[7,0,0,20,12],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6":[5,0,0,21,48],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6":[7,0,0,20,48],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888":[5,0,0,21,17],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888":[7,0,0,20,17],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1":[5,0,0,21,16],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1":[7,0,0,20,16],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a253e51d6dc7226a863a123683049af61":[5,0,0,21,20],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a253e51d6dc7226a863a123683049af61":[7,0,0,20,20],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a2f0c45d4e2b2f9de5d961088f3ab0a9a":[5,0,0,21,11],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a2f0c45d4e2b2f9de5d961088f3ab0a9a":[7,0,0,20,11],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681":[5,0,0,21,3],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681":[7,0,0,20,3],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3af2b37ce21829d9554d702cad074470":[5,0,0,21,41],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3af2b37ce21829d9554d702cad074470":[7,0,0,20,41],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c327a40d7c667043826002975baa2b4":[5,0,0,21,31],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c327a40d7c667043826002975baa2b4":[7,0,0,20,31],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e":[5,0,0,21,18],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e":[7,0,0,20,18]
 };
diff --git a/docs/html/navtreeindex10.js b/docs/html/navtreeindex10.js
new file mode 100644
index 00000000..71e35651
--- /dev/null
+++ b/docs/html/navtreeindex10.js
@@ -0,0 +1,253 @@
+var NAVTREEINDEX10 =
+{
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#acf5c38826050594aee98d746d0ba40b2":[5,0,0,5,0,0,1],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#acf5c38826050594aee98d746d0ba40b2":[7,0,0,4,0,0,1],
+"structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html":[5,0,0,6,0,0],
+"structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html":[7,0,0,5,0,0],
+"structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a07dfb669f73b029a71eb59cbbed69f42":[5,0,0,6,0,0,2],
+"structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a07dfb669f73b029a71eb59cbbed69f42":[7,0,0,5,0,0,2],
+"structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a3eb0be2063f7333994a026a569ae5568":[5,0,0,6,0,0,3],
+"structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a3eb0be2063f7333994a026a569ae5568":[7,0,0,5,0,0,3],
+"structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a6371b8f8c45a9b069b19dd968ff81b28":[5,0,0,6,0,0,1],
+"structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a6371b8f8c45a9b069b19dd968ff81b28":[7,0,0,5,0,0,1],
+"structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#afb2af3df6ec5ea439b5ea55571975391":[5,0,0,6,0,0,0],
+"structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#afb2af3df6ec5ea439b5ea55571975391":[7,0,0,5,0,0,0],
+"structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html":[5,0,0,6,0,1],
+"structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html":[7,0,0,5,0,1],
+"structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a086720ca534bc4c63d9341995e2f87bd":[5,0,0,6,0,1,1],
+"structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a086720ca534bc4c63d9341995e2f87bd":[7,0,0,5,0,1,1],
+"structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a1541a5280bd1b3f90bc62d7c0e1f80a1":[5,0,0,6,0,1,0],
+"structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a1541a5280bd1b3f90bc62d7c0e1f80a1":[7,0,0,5,0,1,0],
+"structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html":[5,0,0,6,0,2],
+"structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html":[7,0,0,5,0,2],
+"structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a30362f5bb497ae74cf6a10fd701273a0":[5,0,0,6,0,2,2],
+"structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a30362f5bb497ae74cf6a10fd701273a0":[7,0,0,5,0,2,2],
+"structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a82cc218ce48dcb835d07422dad927a5a":[5,0,0,6,0,2,1],
+"structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a82cc218ce48dcb835d07422dad927a5a":[7,0,0,5,0,2,1],
+"structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a99da523669d85aa0a628d35a077d541c":[5,0,0,6,0,2,3],
+"structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a99da523669d85aa0a628d35a077d541c":[7,0,0,5,0,2,3],
+"structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#ad0df5ef84e3a78d881838a3bb014db83":[5,0,0,6,0,2,0],
+"structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#ad0df5ef84e3a78d881838a3bb014db83":[7,0,0,5,0,2,0],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html":[5,0,0,6,0,3],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html":[7,0,0,5,0,3],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a075a70baa4ac5859fb01d493e08debdd":[5,0,0,6,0,3,4],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a075a70baa4ac5859fb01d493e08debdd":[7,0,0,5,0,3,4],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a2344c046a615bc6ff07327d6bcfe074b":[5,0,0,6,0,3,9],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a2344c046a615bc6ff07327d6bcfe074b":[7,0,0,5,0,3,9],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a318b62e183dcb49c04260832454fa721":[5,0,0,6,0,3,10],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a318b62e183dcb49c04260832454fa721":[7,0,0,5,0,3,10],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a359555f2b05e4b30bf810e12456df43b":[5,0,0,6,0,3,3],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a359555f2b05e4b30bf810e12456df43b":[7,0,0,5,0,3,3],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a9d4db2970fc7f525824f6666198b3d56":[5,0,0,6,0,3,1],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a9d4db2970fc7f525824f6666198b3d56":[7,0,0,5,0,3,1],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ab41dace2493e036460736d8124a3475c":[5,0,0,6,0,3,2],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ab41dace2493e036460736d8124a3475c":[7,0,0,5,0,3,2],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#abd2d7fc00f582316eae824ccafef9b4b":[5,0,0,6,0,3,5],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#abd2d7fc00f582316eae824ccafef9b4b":[7,0,0,5,0,3,5],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ac08d42071950006ccf3c438253ef9ee9":[5,0,0,6,0,3,8],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ac08d42071950006ccf3c438253ef9ee9":[7,0,0,5,0,3,8],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ad7908a8b8a1db5014f23a7b3855156b0":[5,0,0,6,0,3,7],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ad7908a8b8a1db5014f23a7b3855156b0":[7,0,0,5,0,3,7],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#aee9ee73218397780a2a7708c29779c73":[5,0,0,6,0,3,0],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#aee9ee73218397780a2a7708c29779c73":[7,0,0,5,0,3,0],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#afc3f5d3e5c3ec52134619fd462922f85":[5,0,0,6,0,3,6],
+"structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#afc3f5d3e5c3ec52134619fd462922f85":[7,0,0,5,0,3,6],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html":[5,0,0,6,0,4],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html":[7,0,0,5,0,4],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a3cf82898078fcc9aa69344b4d2cf8783":[5,0,0,6,0,4,5],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a3cf82898078fcc9aa69344b4d2cf8783":[7,0,0,5,0,4,5],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a415f5ff7ee18cc241eab5fbf6a0cdc17":[5,0,0,6,0,4,4],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a415f5ff7ee18cc241eab5fbf6a0cdc17":[7,0,0,5,0,4,4],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a54ba76b67d037954af1cbd6052becc61":[5,0,0,6,0,4,1],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a54ba76b67d037954af1cbd6052becc61":[7,0,0,5,0,4,1],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a5e15e3d4d03288bd6f5dfc7054120514":[5,0,0,6,0,4,3],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a5e15e3d4d03288bd6f5dfc7054120514":[7,0,0,5,0,4,3],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a87894b5fdb0323c41f8e1e179ffefd1e":[5,0,0,6,0,4,0],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a87894b5fdb0323c41f8e1e179ffefd1e":[7,0,0,5,0,4,0],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#ab79353551bc5f832c986d24384d8a53a":[5,0,0,6,0,4,2],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#ab79353551bc5f832c986d24384d8a53a":[7,0,0,5,0,4,2],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html":[5,0,0,6,0,6],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html":[7,0,0,5,0,6],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a6bbeb82cc27fd59ceafa320c1515106a":[5,0,0,6,0,6,4],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a6bbeb82cc27fd59ceafa320c1515106a":[7,0,0,5,0,6,4],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9134b85837be88ece72c20df9edce50d":[5,0,0,6,0,6,0],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9134b85837be88ece72c20df9edce50d":[7,0,0,5,0,6,0],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9d71d093fbb35cd8a451ea12cde28771":[5,0,0,6,0,6,2],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9d71d093fbb35cd8a451ea12cde28771":[7,0,0,5,0,6,2],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aa2e81d295afba465427e46b36e1438e4":[5,0,0,6,0,6,1],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aa2e81d295afba465427e46b36e1438e4":[7,0,0,5,0,6,1],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#abe1b2dd11ec550311a58555f3a945cbe":[5,0,0,6,0,6,5],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#abe1b2dd11ec550311a58555f3a945cbe":[7,0,0,5,0,6,5],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aeb0494f46a0c6b9e29ed4cc15f07364b":[5,0,0,6,0,6,3],
+"structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aeb0494f46a0c6b9e29ed4cc15f07364b":[7,0,0,5,0,6,3],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html":[5,0,0,6,0,7,1],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html":[7,0,0,5,0,7,1],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a016c3e02f622e21073f9110707177b76":[5,0,0,6,0,7,1,12],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a016c3e02f622e21073f9110707177b76":[7,0,0,5,0,7,1,12],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a0629ea0e5d51166e400696a358b0045e":[5,0,0,6,0,7,1,9],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a0629ea0e5d51166e400696a358b0045e":[7,0,0,5,0,7,1,9],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a24d6517e15c177fb8ca72f08f8eaf509":[5,0,0,6,0,7,1,3],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a24d6517e15c177fb8ca72f08f8eaf509":[7,0,0,5,0,7,1,3],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a2d6c6d4eb9b54c050c266298611c1e44":[5,0,0,6,0,7,1,8],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a2d6c6d4eb9b54c050c266298611c1e44":[7,0,0,5,0,7,1,8],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a57273916131b68d1aed6e16d85667427":[5,0,0,6,0,7,1,7],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a57273916131b68d1aed6e16d85667427":[7,0,0,5,0,7,1,7],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8998f5acb979463eeabb14da50fb6856":[5,0,0,6,0,7,1,2],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8998f5acb979463eeabb14da50fb6856":[7,0,0,5,0,7,1,2],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8a780d3937e60794f007ec65fe866a56":[5,0,0,6,0,7,1,11],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8a780d3937e60794f007ec65fe866a56":[7,0,0,5,0,7,1,11],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab176a60ea64181d84be3bb6496ad0b0e":[5,0,0,6,0,7,1,1],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab176a60ea64181d84be3bb6496ad0b0e":[7,0,0,5,0,7,1,1],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab60f42677de82f3aab77d2af846c2ffd":[5,0,0,6,0,7,1,6],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab60f42677de82f3aab77d2af846c2ffd":[7,0,0,5,0,7,1,6],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab7d46e02bb7264ff3aada6b3997b2ab1":[5,0,0,6,0,7,1,13],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab7d46e02bb7264ff3aada6b3997b2ab1":[7,0,0,5,0,7,1,13],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abdb3124f6ef5ea294f402d30717fa208":[5,0,0,6,0,7,1,10],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abdb3124f6ef5ea294f402d30717fa208":[7,0,0,5,0,7,1,10],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abe06f72b5b646cb3f1462b56d94a1de4":[5,0,0,6,0,7,1,0],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abe06f72b5b646cb3f1462b56d94a1de4":[7,0,0,5,0,7,1,0],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ae527298ffcdeb0b7b4089eeed4ddb58d":[5,0,0,6,0,7,1,5],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ae527298ffcdeb0b7b4089eeed4ddb58d":[7,0,0,5,0,7,1,5],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#af834029caff08f9d5f7ff3a817ade469":[5,0,0,6,0,7,1,4],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#af834029caff08f9d5f7ff3a817ade469":[7,0,0,5,0,7,1,4],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html":[5,0,0,6,0,8],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html":[7,0,0,5,0,8],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a17dde21438cabec9ae23a0d318c41a7a":[5,0,0,6,0,8,3],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a17dde21438cabec9ae23a0d318c41a7a":[7,0,0,5,0,8,3],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a4a1cbc93d5e197a69a5a29a8cabc6498":[5,0,0,6,0,8,4],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a4a1cbc93d5e197a69a5a29a8cabc6498":[7,0,0,5,0,8,4],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a549f4c9266722314f61d668d8507145c":[5,0,0,6,0,8,5],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a549f4c9266722314f61d668d8507145c":[7,0,0,5,0,8,5],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a5a2525ca7e7b2c812b1f67b3b0114aaf":[5,0,0,6,0,8,0],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a5a2525ca7e7b2c812b1f67b3b0114aaf":[7,0,0,5,0,8,0],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a90b6e47918fa750c28917ba6136c7880":[5,0,0,6,0,8,2],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a90b6e47918fa750c28917ba6136c7880":[7,0,0,5,0,8,2],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#aa603395b65c8639f8d93f73b7d9bd61e":[5,0,0,6,0,8,1],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#aa603395b65c8639f8d93f73b7d9bd61e":[7,0,0,5,0,8,1],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#ad0bb77849bda4934472675e196af87c8":[5,0,0,6,0,8,6],
+"structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#ad0bb77849bda4934472675e196af87c8":[7,0,0,5,0,8,6],
+"structgridfire_1_1reaclib_1_1_reaction_record.html":[5,0,0,7,0],
+"structgridfire_1_1reaclib_1_1_reaction_record.html":[7,0,0,6,0],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a2165deb1c0a54a5086b496cf34604fa5":[5,0,0,7,0,2],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a2165deb1c0a54a5086b496cf34604fa5":[7,0,0,6,0,2],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a523b7cfb0a6d8ddccd785aef2f425ad1":[5,0,0,7,0,7],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a523b7cfb0a6d8ddccd785aef2f425ad1":[7,0,0,6,0,7],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc":[5,0,0,7,0,0],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc":[7,0,0,6,0,0],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a67afc513db8dbcc43d79733e22ca8d39":[5,0,0,7,0,5],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a67afc513db8dbcc43d79733e22ca8d39":[7,0,0,6,0,5],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0":[5,0,0,7,0,1],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0":[7,0,0,6,0,1],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd":[5,0,0,7,0,6],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd":[7,0,0,6,0,6],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#aeeb8a1e078a27420e398663825cce644":[5,0,0,7,0,4],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#aeeb8a1e078a27420e398663825cce644":[7,0,0,6,0,4],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#af1b1d3b0308d965ef0697b247fcf9082":[5,0,0,7,0,3],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#af1b1d3b0308d965ef0697b247fcf9082":[7,0,0,6,0,3],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html":[5,0,0,8,1],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html":[7,0,0,7,1],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2a9316d19bc2e8bf0a7872eb6fe8a53f":[5,0,0,8,1,3],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2a9316d19bc2e8bf0a7872eb6fe8a53f":[7,0,0,7,1,3],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2fa6b65e300dcd181222b743c2b3d6ed":[5,0,0,8,1,1],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2fa6b65e300dcd181222b743c2b3d6ed":[7,0,0,7,1,1],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f":[5,0,0,8,1,0],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f":[7,0,0,7,1,0],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a3d047485ebb57d6c763adfe4aae493b1":[5,0,0,8,1,4],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a3d047485ebb57d6c763adfe4aae493b1":[7,0,0,7,1,4],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a8c79db4e649b4eb1d29c43ebe4e95458":[5,0,0,8,1,6],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a8c79db4e649b4eb1d29c43ebe4e95458":[7,0,0,7,1,6],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ace9dbd928e179784e47eaa108ce8d721":[5,0,0,8,1,2],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ace9dbd928e179784e47eaa108ce8d721":[7,0,0,7,1,2],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#adf8e6ed7f91cb9e15d1469a808b1877a":[5,0,0,8,1,7],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#adf8e6ed7f91cb9e15d1469a808b1877a":[7,0,0,7,1,7],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ae57b2eac71cb4ed9947f40c9cb8fc3ca":[5,0,0,8,1,5],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ae57b2eac71cb4ed9947f40c9cb8fc3ca":[7,0,0,7,1,5],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html":[5,0,0,10,0,0],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html":[7,0,0,9,0,0],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a0b27605ac3211a1805d7910c899bbcce":[5,0,0,10,0,0,6],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a0b27605ac3211a1805d7910c899bbcce":[7,0,0,9,0,0,6],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a1fb4ca773aaad8d1d958a3a0e82d8edd":[5,0,0,10,0,0,1],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a1fb4ca773aaad8d1d958a3a0e82d8edd":[7,0,0,9,0,0,1],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a3e089139de2ba47e96dfe22c14d24e9e":[5,0,0,10,0,0,0],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a3e089139de2ba47e96dfe22c14d24e9e":[7,0,0,9,0,0,0],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a41a5bc46358cb59373f62c791e1bc29c":[5,0,0,10,0,0,3],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a41a5bc46358cb59373f62c791e1bc29c":[7,0,0,9,0,0,3],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ac44d6bd0f4952d8bfdf487a09264872b":[5,0,0,10,0,0,2],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ac44d6bd0f4952d8bfdf487a09264872b":[7,0,0,9,0,0,2],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ad7f3eb9caae25ef25357c41c23d6b392":[5,0,0,10,0,0,5],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ad7f3eb9caae25ef25357c41c23d6b392":[7,0,0,9,0,0,5],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#afdc510f8160693806737c4ab517058b8":[5,0,0,10,0,0,4],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#afdc510f8160693806737c4ab517058b8":[7,0,0,9,0,0,4],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html":[5,0,0,10,0,1],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html":[7,0,0,9,0,1],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a0b39f0d207181840efacb64417b492ae":[5,0,0,10,0,1,9],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a0b39f0d207181840efacb64417b492ae":[7,0,0,9,0,1,9],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a25743a21ed801ed4288309f35dc9a289":[5,0,0,10,0,1,10],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a25743a21ed801ed4288309f35dc9a289":[7,0,0,9,0,1,10],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a406b36ce5f192c855eb3c8dcf0fde0bd":[5,0,0,10,0,1,0],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a406b36ce5f192c855eb3c8dcf0fde0bd":[7,0,0,9,0,1,0],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a25afbc9f8a907304992e144dfa3529":[5,0,0,10,0,1,7],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a25afbc9f8a907304992e144dfa3529":[7,0,0,9,0,1,7],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a92187c15b7bcb90adebecc87e1436a":[5,0,0,10,0,1,4],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a92187c15b7bcb90adebecc87e1436a":[7,0,0,9,0,1,4],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a51e86d2721053055d8479662b864e367":[5,0,0,10,0,1,6],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a51e86d2721053055d8479662b864e367":[7,0,0,9,0,1,6],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a6442d15673e6385bb6fdd11e1179c487":[5,0,0,10,0,1,2],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a6442d15673e6385bb6fdd11e1179c487":[7,0,0,9,0,1,2],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a75d7e32c9df3d8a047069fe2d64cd089":[5,0,0,10,0,1,5],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a75d7e32c9df3d8a047069fe2d64cd089":[7,0,0,9,0,1,5],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#aaae3c42b9172be4d501f022e67f5a6f6":[5,0,0,10,0,1,8],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#aaae3c42b9172be4d501f022e67f5a6f6":[7,0,0,9,0,1,8],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#ae3c6320ce7a8f41c9ae36c42d62b4204":[5,0,0,10,0,1,1],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#ae3c6320ce7a8f41c9ae36c42d62b4204":[7,0,0,9,0,1,1],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#af8c233f893bf740e81c5254d84534067":[5,0,0,10,0,1,3],
+"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#af8c233f893bf740e81c5254d84534067":[7,0,0,9,0,1,3],
+"structgridfire_1_1solver_1_1_solver_context_base.html":[5,0,0,10,2],
+"structgridfire_1_1solver_1_1_solver_context_base.html":[7,0,0,9,2],
+"structgridfire_1_1solver_1_1_solver_context_base.html#a9cbef3cabc8524e542613ee50d8860c6":[5,0,0,10,2,1],
+"structgridfire_1_1solver_1_1_solver_context_base.html#a9cbef3cabc8524e542613ee50d8860c6":[7,0,0,9,2,1],
+"structgridfire_1_1solver_1_1_solver_context_base.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8":[5,0,0,10,2,0],
+"structgridfire_1_1solver_1_1_solver_context_base.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8":[7,0,0,9,2,0],
+"structgridfire_1_1trigger_1_1_trigger_result.html":[5,0,0,11,7],
+"structgridfire_1_1trigger_1_1_trigger_result.html":[7,0,0,10,7],
+"structgridfire_1_1trigger_1_1_trigger_result.html#a1f27dd6d5cca43956812ec78cfb7be2d":[5,0,0,11,7,2],
+"structgridfire_1_1trigger_1_1_trigger_result.html#a1f27dd6d5cca43956812ec78cfb7be2d":[7,0,0,10,7,2],
+"structgridfire_1_1trigger_1_1_trigger_result.html#a372af12d705b623075c41872f3ec96e1":[5,0,0,11,7,3],
+"structgridfire_1_1trigger_1_1_trigger_result.html#a372af12d705b623075c41872f3ec96e1":[7,0,0,10,7,3],
+"structgridfire_1_1trigger_1_1_trigger_result.html#a7cf4d21d3cd3e53b62736932b44072cd":[5,0,0,11,7,0],
+"structgridfire_1_1trigger_1_1_trigger_result.html#a7cf4d21d3cd3e53b62736932b44072cd":[7,0,0,10,7,0],
+"structgridfire_1_1trigger_1_1_trigger_result.html#aaf99ffdeb73f5e792e61c4cca68aa157":[5,0,0,11,7,1],
+"structgridfire_1_1trigger_1_1_trigger_result.html#aaf99ffdeb73f5e792e61c4cca68aa157":[7,0,0,10,7,1],
+"structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html":[5,0,1,0],
+"structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html":[7,0,1,0],
+"structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3":[5,0,1,0,0],
+"structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3":[7,0,1,0,0],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html":[5,0,1,1],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html":[7,0,1,1],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9":[5,0,1,1,0],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9":[7,0,1,1,0],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html":[5,0,1,2],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html":[7,0,1,2],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921":[5,0,1,2,0],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921":[7,0,1,2,0],
+"table__format_8h.html":[8,0,1,0,0,10,1],
+"trigger__abstract_8h.html":[8,0,1,0,0,9,1],
+"trigger__logical_8h.html":[8,0,1,0,0,9,2],
+"trigger__pprint_8h.html":[8,0,1,0,0,9,0,0],
+"trigger__result_8h.html":[8,0,1,0,0,9,3],
+"types_2bindings_8cpp.html":[8,0,1,2,8,0],
+"types_2bindings_8cpp.html#aa0589677938fad59ffce3f6981f53ff0":[8,0,1,2,8,0,0],
+"types_2bindings_8h.html":[8,0,1,2,8,1],
+"types_2bindings_8h.html#aa0589677938fad59ffce3f6981f53ff0":[8,0,1,2,8,1,0],
+"utils_2bindings_8cpp.html":[8,0,1,2,9,0],
+"utils_2bindings_8cpp.html#a7af842f50ca4a721518e716d0229697c":[8,0,1,2,9,0,0],
+"utils_2bindings_8h.html":[8,0,1,2,9,1],
+"utils_2bindings_8h.html#a9eefca377142320755a869fafc6311c7":[8,0,1,2,9,1,0],
+"weak_8cpp.html":[8,0,1,1,3,0,0],
+"weak_8h.html":[8,0,1,0,0,6,0,0],
+"weak_8h.html#a56d76d6c9aef1e09f707c836a157ff27":[8,0,1,0,0,6,0,0,4],
+"weak__interpolator_8cpp.html":[8,0,1,1,3,0,1],
+"weak__interpolator_8h.html":[8,0,1,0,0,6,0,1],
+"weak__rate__library_8h.html":[8,0,1,0,0,6,0,2],
+"weak__types_8h.html":[8,0,1,0,0,6,0,3]
+};
diff --git a/docs/html/navtreeindex2.js b/docs/html/navtreeindex2.js
index edf8def6..79dc2dd5 100644
--- a/docs/html/navtreeindex2.js
+++ b/docs/html/navtreeindex2.js
@@ -1,170 +1,217 @@
 var NAVTREEINDEX2 =
 {
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044":[7,0,0,16,8],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82":[5,0,0,17,22],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82":[7,0,0,16,22],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c":[5,0,0,17,32],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c":[7,0,0,16,32],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a":[5,0,0,17,47],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a":[7,0,0,16,47],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a91d32b7197fcb27ee697d5bfde960f3f":[5,0,0,17,24],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a91d32b7197fcb27ee697d5bfde960f3f":[7,0,0,16,24],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7":[5,0,0,17,31],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7":[7,0,0,16,31],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa38c367ef3c74d012ccd10521cd5a727":[5,0,0,17,23],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa38c367ef3c74d012ccd10521cd5a727":[7,0,0,16,23],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa55ed182301d216264daae3e6dfd8917":[5,0,0,17,38],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa55ed182301d216264daae3e6dfd8917":[7,0,0,16,38],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a":[5,0,0,17,44],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a":[7,0,0,16,44],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0":[5,0,0,17,29],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0":[7,0,0,16,29],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aae0865e361dfeb23984d70409fdd9f39":[5,0,0,17,6],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aae0865e361dfeb23984d70409fdd9f39":[7,0,0,16,6],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a":[5,0,0,17,15],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a":[7,0,0,16,15],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ac206840057bac65b7f7738e6dfd1047a":[5,0,0,17,10],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ac206840057bac65b7f7738e6dfd1047a":[7,0,0,16,10],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ac961484383e86d9712a424728e068633":[5,0,0,17,19],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ac961484383e86d9712a424728e068633":[7,0,0,16,19],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#acb5fa7f03cd89b8c1b6b9ffdf3abb12e":[5,0,0,17,34],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#acb5fa7f03cd89b8c1b6b9ffdf3abb12e":[7,0,0,16,34],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#acdf5ad8765290ea2b78170235aea391d":[5,0,0,17,14],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#acdf5ad8765290ea2b78170235aea391d":[7,0,0,16,14],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18":[5,0,0,17,13],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18":[7,0,0,16,13],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ad4d29ee55f89384807616d1068797067":[5,0,0,17,30],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ad4d29ee55f89384807616d1068797067":[7,0,0,16,30],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ad751f2c1306895ee74a61f2071ca96eb":[5,0,0,17,20],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ad751f2c1306895ee74a61f2071ca96eb":[7,0,0,16,20],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ae3875c61dc916c0982ed122c2e272d94":[5,0,0,17,7],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ae3875c61dc916c0982ed122c2e272d94":[7,0,0,16,7],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46":[5,0,0,17,28],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46":[7,0,0,16,28],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f":[5,0,0,17,45],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f":[7,0,0,16,45],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#af13e764c118a6cc51847384e9c70e05b":[5,0,0,17,5],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#af13e764c118a6cc51847384e9c70e05b":[7,0,0,16,5],
-"classgridfire_1_1_network.html":[5,0,0,20],
-"classgridfire_1_1_network.html":[7,0,0,19],
-"classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16":[5,0,0,20,11],
-"classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16":[7,0,0,19,11],
-"classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55":[5,0,0,20,0],
-"classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55":[7,0,0,19,0],
-"classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118":[5,0,0,20,3],
-"classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118":[7,0,0,19,3],
-"classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18":[5,0,0,20,9],
-"classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18":[7,0,0,19,9],
-"classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4":[5,0,0,20,5],
-"classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4":[7,0,0,19,5],
-"classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe":[5,0,0,20,6],
-"classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe":[7,0,0,19,6],
-"classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5":[5,0,0,20,10],
-"classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5":[7,0,0,19,10],
-"classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09":[5,0,0,20,7],
-"classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09":[7,0,0,19,7],
-"classgridfire_1_1_network.html#ab8d83289b62dda9b4e02f25311f85b79":[5,0,0,20,1],
-"classgridfire_1_1_network.html#ab8d83289b62dda9b4e02f25311f85b79":[7,0,0,19,1],
-"classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410":[5,0,0,20,8],
-"classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410":[7,0,0,19,8],
-"classgridfire_1_1_network.html#ae93ad65deba79def4b77d420e7affa0b":[5,0,0,20,4],
-"classgridfire_1_1_network.html#ae93ad65deba79def4b77d420e7affa0b":[7,0,0,19,4],
-"classgridfire_1_1_network.html#aefe364ae5af783e19e7b93bfd475566e":[5,0,0,20,12],
-"classgridfire_1_1_network.html#aefe364ae5af783e19e7b93bfd475566e":[7,0,0,19,12],
-"classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c":[5,0,0,20,2],
-"classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c":[7,0,0,19,2],
-"classgridfire_1_1_network_priming_engine_view.html":[5,0,0,21],
-"classgridfire_1_1_network_priming_engine_view.html":[7,0,0,20],
-"classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d":[5,0,0,21,3],
-"classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d":[7,0,0,20,3],
-"classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f":[5,0,0,21,2],
-"classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f":[7,0,0,20,2],
-"classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6":[5,0,0,21,1],
-"classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6":[7,0,0,20,1],
-"classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177":[5,0,0,21,0],
-"classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177":[7,0,0,20,0],
-"classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5":[5,0,0,21,4],
-"classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5":[7,0,0,20,4],
-"classgridfire_1_1_reaction.html":[5,0,0,25],
-"classgridfire_1_1_reaction.html":[7,0,0,24],
-"classgridfire_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6":[5,0,0,25,38],
-"classgridfire_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6":[7,0,0,24,38],
-"classgridfire_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c":[5,0,0,25,19],
-"classgridfire_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c":[7,0,0,24,19],
-"classgridfire_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2":[5,0,0,25,9],
-"classgridfire_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2":[7,0,0,24,9],
-"classgridfire_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905":[5,0,0,25,13],
-"classgridfire_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905":[7,0,0,24,13],
-"classgridfire_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9":[5,0,0,25,37],
-"classgridfire_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9":[7,0,0,24,37],
-"classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b":[5,0,0,25,24],
-"classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b":[7,0,0,24,24],
-"classgridfire_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b":[5,0,0,25,29],
-"classgridfire_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b":[7,0,0,24,29],
-"classgridfire_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97":[5,0,0,25,15],
-"classgridfire_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97":[7,0,0,24,15],
-"classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8":[5,0,0,25,28],
-"classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8":[7,0,0,24,28],
-"classgridfire_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51":[5,0,0,25,16],
-"classgridfire_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51":[7,0,0,24,16],
-"classgridfire_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061":[5,0,0,25,3],
-"classgridfire_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061":[7,0,0,24,3],
-"classgridfire_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0":[5,0,0,25,25],
-"classgridfire_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0":[7,0,0,24,25],
-"classgridfire_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e":[5,0,0,25,33],
-"classgridfire_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e":[7,0,0,24,33],
-"classgridfire_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b":[5,0,0,25,34],
-"classgridfire_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b":[7,0,0,24,34],
-"classgridfire_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b":[5,0,0,25,30],
-"classgridfire_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b":[7,0,0,24,30],
-"classgridfire_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629":[5,0,0,25,7],
-"classgridfire_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629":[7,0,0,24,7],
-"classgridfire_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248":[5,0,0,25,32],
-"classgridfire_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248":[7,0,0,24,32],
-"classgridfire_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af":[5,0,0,25,6],
-"classgridfire_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af":[7,0,0,24,6],
-"classgridfire_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02":[5,0,0,25,20],
-"classgridfire_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02":[7,0,0,24,20],
-"classgridfire_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4":[5,0,0,25,31],
-"classgridfire_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4":[7,0,0,24,31],
-"classgridfire_1_1_reaction.html#a735192a42f72cd68f289493753e1a616":[5,0,0,25,4],
-"classgridfire_1_1_reaction.html#a735192a42f72cd68f289493753e1a616":[7,0,0,24,4],
-"classgridfire_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97":[5,0,0,25,18],
-"classgridfire_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97":[7,0,0,24,18],
-"classgridfire_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224":[5,0,0,25,2],
-"classgridfire_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224":[7,0,0,24,2],
-"classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c":[5,0,0,25,1],
-"classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c":[7,0,0,24,1],
-"classgridfire_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923":[5,0,0,25,23],
-"classgridfire_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923":[7,0,0,24,23],
-"classgridfire_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e":[5,0,0,25,22],
-"classgridfire_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e":[7,0,0,24,22],
-"classgridfire_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11":[5,0,0,25,36],
-"classgridfire_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11":[7,0,0,24,36],
-"classgridfire_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5":[5,0,0,25,11],
-"classgridfire_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5":[7,0,0,24,11],
-"classgridfire_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72":[5,0,0,25,35],
-"classgridfire_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72":[7,0,0,24,35],
-"classgridfire_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba":[5,0,0,25,14],
-"classgridfire_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba":[7,0,0,24,14],
-"classgridfire_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac":[5,0,0,25,27],
-"classgridfire_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac":[7,0,0,24,27],
-"classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a":[5,0,0,25,0],
-"classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a":[7,0,0,24,0],
-"classgridfire_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b":[5,0,0,25,8],
-"classgridfire_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b":[7,0,0,24,8],
-"classgridfire_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45":[5,0,0,25,10],
-"classgridfire_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45":[7,0,0,24,10],
-"classgridfire_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8":[5,0,0,25,21],
-"classgridfire_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8":[7,0,0,24,21],
-"classgridfire_1_1_reaction.html#ac426457cf0a54a15b206549422083bac":[5,0,0,25,17],
-"classgridfire_1_1_reaction.html#ac426457cf0a54a15b206549422083bac":[7,0,0,24,17],
-"classgridfire_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3":[5,0,0,25,26],
-"classgridfire_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3":[7,0,0,24,26],
-"classgridfire_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec":[5,0,0,25,5],
-"classgridfire_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec":[7,0,0,24,5],
-"classgridfire_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5":[5,0,0,25,12],
-"classgridfire_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5":[7,0,0,24,12],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a40ce2c18063cd56cffd58419b9ae96bf":[5,0,0,21,36],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a40ce2c18063cd56cffd58419b9ae96bf":[7,0,0,20,36],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb":[5,0,0,21,39],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb":[7,0,0,20,39],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8":[5,0,0,21,42],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8":[7,0,0,20,42],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8":[5,0,0,21,40],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8":[7,0,0,20,40],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a586da5402750151fee5db2666785b6e4":[5,0,0,21,19],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a586da5402750151fee5db2666785b6e4":[7,0,0,20,19],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a5c1ab19bc3394a5d29241ef02073c4cb":[5,0,0,21,9],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a5c1ab19bc3394a5d29241ef02073c4cb":[7,0,0,20,9],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a5d1c11f3c0883385833462dd088f6f89":[5,0,0,21,6],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a5d1c11f3c0883385833462dd088f6f89":[7,0,0,20,6],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80":[5,0,0,21,21],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80":[7,0,0,20,21],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8":[5,0,0,21,37],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8":[7,0,0,20,37],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e":[5,0,0,21,47],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e":[7,0,0,20,47],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a70f4a0c4123b7f78305f64eb11beeeeb":[5,0,0,21,27],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a70f4a0c4123b7f78305f64eb11beeeeb":[7,0,0,20,27],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7140384baaaa0bd05ca448a0d8fec471":[5,0,0,21,26],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7140384baaaa0bd05ca448a0d8fec471":[7,0,0,20,26],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6":[5,0,0,21,30],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6":[7,0,0,20,30],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82":[5,0,0,21,22],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82":[7,0,0,20,22],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a":[5,0,0,21,46],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a":[7,0,0,20,46],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a87687a960f263a4e1bc035e4d0a345db":[5,0,0,21,8],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a87687a960f263a4e1bc035e4d0a345db":[7,0,0,20,8],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a8db21995e6878f4043f3a5a45bf36d5e":[5,0,0,21,24],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a8db21995e6878f4043f3a5a45bf36d5e":[7,0,0,20,24],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7":[5,0,0,21,32],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7":[7,0,0,20,32],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a99f9116d5a18afcbf0e808ef111d1be8":[5,0,0,21,7],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a99f9116d5a18afcbf0e808ef111d1be8":[7,0,0,20,7],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a":[5,0,0,21,44],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a":[7,0,0,20,44],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aaabaae8e33ca8a05a2aa1f374e792795":[5,0,0,21,10],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aaabaae8e33ca8a05a2aa1f374e792795":[7,0,0,20,10],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0":[5,0,0,21,29],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0":[7,0,0,20,29],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ab9f71bc9a1c0f98ec9cc1c7da00fd975":[5,0,0,21,14],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ab9f71bc9a1c0f98ec9cc1c7da00fd975":[7,0,0,20,14],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a":[5,0,0,21,15],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a":[7,0,0,20,15],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ad94c6fa2281d9104471631c6b90f411e":[5,0,0,21,38],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ad94c6fa2281d9104471631c6b90f411e":[7,0,0,20,38],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#adfa1e133c49c0ef78b374d37e90a3372":[5,0,0,21,13],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#adfa1e133c49c0ef78b374d37e90a3372":[7,0,0,20,13],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46":[5,0,0,21,28],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46":[7,0,0,20,28],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aea2c3d2ae6ddf77bd4a9b07b86f3306b":[5,0,0,21,25],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aea2c3d2ae6ddf77bd4a9b07b86f3306b":[7,0,0,20,25],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f":[5,0,0,21,45],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f":[7,0,0,20,45],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#af99f5e4871808188d00379c1c35868fe":[5,0,0,21,34],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#af99f5e4871808188d00379c1c35868fe":[7,0,0,20,34],
+"classgridfire_1_1_network.html":[5,0,0,24],
+"classgridfire_1_1_network.html":[7,0,0,23],
+"classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16":[5,0,0,24,11],
+"classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16":[7,0,0,23,11],
+"classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55":[5,0,0,24,0],
+"classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55":[7,0,0,23,0],
+"classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118":[5,0,0,24,3],
+"classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118":[7,0,0,23,3],
+"classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18":[5,0,0,24,9],
+"classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18":[7,0,0,23,9],
+"classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4":[5,0,0,24,5],
+"classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4":[7,0,0,23,5],
+"classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe":[5,0,0,24,6],
+"classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe":[7,0,0,23,6],
+"classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5":[5,0,0,24,10],
+"classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5":[7,0,0,23,10],
+"classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09":[5,0,0,24,7],
+"classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09":[7,0,0,23,7],
+"classgridfire_1_1_network.html#ab8d83289b62dda9b4e02f25311f85b79":[5,0,0,24,1],
+"classgridfire_1_1_network.html#ab8d83289b62dda9b4e02f25311f85b79":[7,0,0,23,1],
+"classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410":[5,0,0,24,8],
+"classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410":[7,0,0,23,8],
+"classgridfire_1_1_network.html#ae93ad65deba79def4b77d420e7affa0b":[5,0,0,24,4],
+"classgridfire_1_1_network.html#ae93ad65deba79def4b77d420e7affa0b":[7,0,0,23,4],
+"classgridfire_1_1_network.html#aefe364ae5af783e19e7b93bfd475566e":[5,0,0,24,12],
+"classgridfire_1_1_network.html#aefe364ae5af783e19e7b93bfd475566e":[7,0,0,23,12],
+"classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c":[5,0,0,24,2],
+"classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c":[7,0,0,23,2],
+"classgridfire_1_1_network_priming_engine_view.html":[5,0,0,25],
+"classgridfire_1_1_network_priming_engine_view.html":[7,0,0,24],
+"classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d":[5,0,0,25,3],
+"classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d":[7,0,0,24,3],
+"classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f":[5,0,0,25,2],
+"classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f":[7,0,0,24,2],
+"classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6":[5,0,0,25,1],
+"classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6":[7,0,0,24,1],
+"classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177":[5,0,0,25,0],
+"classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177":[7,0,0,24,0],
+"classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5":[5,0,0,25,4],
+"classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5":[7,0,0,24,4],
+"classgridfire_1_1_reaction.html":[5,0,0,29],
+"classgridfire_1_1_reaction.html":[7,0,0,28],
+"classgridfire_1_1_reaction.html#a0c533797f18c2fe4945f1afb3fb06d5d":[5,0,0,29,19],
+"classgridfire_1_1_reaction.html#a0c533797f18c2fe4945f1afb3fb06d5d":[7,0,0,28,19],
+"classgridfire_1_1_reaction.html#a11c714febaf818f1d4d6c19a064d707e":[5,0,0,29,17],
+"classgridfire_1_1_reaction.html#a11c714febaf818f1d4d6c19a064d707e":[7,0,0,28,17],
+"classgridfire_1_1_reaction.html#a186856dc2ce85d8cc4db43c7164b6afa":[5,0,0,29,22],
+"classgridfire_1_1_reaction.html#a186856dc2ce85d8cc4db43c7164b6afa":[7,0,0,28,22],
+"classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8":[5,0,0,29,23],
+"classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8":[7,0,0,28,23],
+"classgridfire_1_1_reaction.html#a348aae35a6c82194ef5387278419e0e6":[5,0,0,29,14],
+"classgridfire_1_1_reaction.html#a348aae35a6c82194ef5387278419e0e6":[7,0,0,28,14],
+"classgridfire_1_1_reaction.html#a41b1c16f499c9255251ed43725cf698c":[5,0,0,29,11],
+"classgridfire_1_1_reaction.html#a41b1c16f499c9255251ed43725cf698c":[7,0,0,28,11],
+"classgridfire_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80":[5,0,0,29,2],
+"classgridfire_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80":[7,0,0,28,2],
+"classgridfire_1_1_reaction.html#a4be8440aa7e79eab1d44b5d83bcdab79":[5,0,0,29,18],
+"classgridfire_1_1_reaction.html#a4be8440aa7e79eab1d44b5d83bcdab79":[7,0,0,28,18],
+"classgridfire_1_1_reaction.html#a55b7f61d9bde45f2ca485c1b07a05950":[5,0,0,29,20],
+"classgridfire_1_1_reaction.html#a55b7f61d9bde45f2ca485c1b07a05950":[7,0,0,28,20],
+"classgridfire_1_1_reaction.html#a588a8c19970463d97f5aa333fcd312dc":[5,0,0,29,7],
+"classgridfire_1_1_reaction.html#a588a8c19970463d97f5aa333fcd312dc":[7,0,0,28,7],
+"classgridfire_1_1_reaction.html#a5a17ca61d069749960e5a83e58c0b8a1":[5,0,0,29,9],
+"classgridfire_1_1_reaction.html#a5a17ca61d069749960e5a83e58c0b8a1":[7,0,0,28,9],
+"classgridfire_1_1_reaction.html#a640b0bdbed9ed7c2a2e9880ddbcafc1d":[5,0,0,29,13],
+"classgridfire_1_1_reaction.html#a640b0bdbed9ed7c2a2e9880ddbcafc1d":[7,0,0,28,13],
+"classgridfire_1_1_reaction.html#a768329002a4f0b8604b1aa51d56b5d1b":[5,0,0,29,12],
+"classgridfire_1_1_reaction.html#a768329002a4f0b8604b1aa51d56b5d1b":[7,0,0,28,12],
+"classgridfire_1_1_reaction.html#a8cbc768819bea8497a7b9fa644b8fd65":[5,0,0,29,5],
+"classgridfire_1_1_reaction.html#a8cbc768819bea8497a7b9fa644b8fd65":[7,0,0,28,5],
+"classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a":[5,0,0,29,0],
+"classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a":[7,0,0,28,0],
+"classgridfire_1_1_reaction.html#abb3e2b9c5404f45fc5656eeac1d06a6c":[5,0,0,29,6],
+"classgridfire_1_1_reaction.html#abb3e2b9c5404f45fc5656eeac1d06a6c":[7,0,0,28,6],
+"classgridfire_1_1_reaction.html#ac2306d841bad605b7c9ae104397cec0f":[5,0,0,29,15],
+"classgridfire_1_1_reaction.html#ac2306d841bad605b7c9ae104397cec0f":[7,0,0,28,15],
+"classgridfire_1_1_reaction.html#ac2918935929030e8d218dc8d107a78f9":[5,0,0,29,16],
+"classgridfire_1_1_reaction.html#ac2918935929030e8d218dc8d107a78f9":[7,0,0,28,16],
+"classgridfire_1_1_reaction.html#ace0b2bee91702e0ab97b6fc74999d6f0":[5,0,0,29,1],
+"classgridfire_1_1_reaction.html#ace0b2bee91702e0ab97b6fc74999d6f0":[7,0,0,28,1],
+"classgridfire_1_1_reaction.html#adaeb5d72faf7d55d4e26f6e1fcba21c1":[5,0,0,29,8],
+"classgridfire_1_1_reaction.html#adaeb5d72faf7d55d4e26f6e1fcba21c1":[7,0,0,28,8],
+"classgridfire_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd":[5,0,0,29,3],
+"classgridfire_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd":[7,0,0,28,3],
+"classgridfire_1_1_reaction.html#aec9859c030364e1d4a740197514731db":[5,0,0,29,4],
+"classgridfire_1_1_reaction.html#aec9859c030364e1d4a740197514731db":[7,0,0,28,4],
+"classgridfire_1_1_reaction.html#af0a893603aa88f7d7d205b9b969af487":[5,0,0,29,21],
+"classgridfire_1_1_reaction.html#af0a893603aa88f7d7d205b9b969af487":[7,0,0,28,21],
+"classgridfire_1_1_reaction.html#afca3afba45a3db79980c8fe18c87c750":[5,0,0,29,10],
+"classgridfire_1_1_reaction.html#afca3afba45a3db79980c8fe18c87c750":[7,0,0,28,10],
+"classgridfire_1_1_reaction_set.html":[5,0,0,30],
+"classgridfire_1_1_reaction_set.html":[7,0,0,29],
+"classgridfire_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd":[5,0,0,30,23],
+"classgridfire_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd":[7,0,0,29,23],
+"classgridfire_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b":[5,0,0,30,16],
+"classgridfire_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b":[7,0,0,29,16],
+"classgridfire_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613":[5,0,0,30,6],
+"classgridfire_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613":[7,0,0,29,6],
+"classgridfire_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2":[5,0,0,30,12],
+"classgridfire_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2":[7,0,0,29,12],
+"classgridfire_1_1_reaction_set.html#a2f6b165c86634a68f35032c2267255f8":[5,0,0,30,9],
+"classgridfire_1_1_reaction_set.html#a2f6b165c86634a68f35032c2267255f8":[7,0,0,29,9],
+"classgridfire_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b":[5,0,0,30,22],
+"classgridfire_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b":[7,0,0,29,22],
+"classgridfire_1_1_reaction_set.html#a436f9c4b8f8a4e115b19728d57d8e105":[5,0,0,30,15],
+"classgridfire_1_1_reaction_set.html#a436f9c4b8f8a4e115b19728d57d8e105":[7,0,0,29,15],
+"classgridfire_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e":[5,0,0,30,11],
+"classgridfire_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e":[7,0,0,29,11],
+"classgridfire_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135":[5,0,0,30,20],
+"classgridfire_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135":[7,0,0,29,20],
+"classgridfire_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8":[5,0,0,30,18],
+"classgridfire_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8":[7,0,0,29,18],
+"classgridfire_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20":[5,0,0,30,25],
+"classgridfire_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20":[7,0,0,29,25],
+"classgridfire_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a":[5,0,0,30,13],
+"classgridfire_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a":[7,0,0,29,13],
+"classgridfire_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44":[5,0,0,30,28],
+"classgridfire_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44":[7,0,0,29,28],
+"classgridfire_1_1_reaction_set.html#a789dee5d93810b85062e59508fe0adea":[5,0,0,30,1],
+"classgridfire_1_1_reaction_set.html#a789dee5d93810b85062e59508fe0adea":[7,0,0,29,1],
+"classgridfire_1_1_reaction_set.html#a896b4e492ef596d9174aeda4b59c46cd":[5,0,0,30,21],
+"classgridfire_1_1_reaction_set.html#a896b4e492ef596d9174aeda4b59c46cd":[7,0,0,29,21],
+"classgridfire_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de":[5,0,0,30,0],
+"classgridfire_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de":[7,0,0,29,0],
+"classgridfire_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300":[5,0,0,30,8],
+"classgridfire_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300":[7,0,0,29,8],
+"classgridfire_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a":[5,0,0,30,19],
+"classgridfire_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a":[7,0,0,29,19],
+"classgridfire_1_1_reaction_set.html#ab9edff40316b42ce41b2f895962c1041":[5,0,0,30,2],
+"classgridfire_1_1_reaction_set.html#ab9edff40316b42ce41b2f895962c1041":[7,0,0,29,2],
+"classgridfire_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987":[5,0,0,30,14],
+"classgridfire_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987":[7,0,0,29,14],
+"classgridfire_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe":[5,0,0,30,29],
+"classgridfire_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe":[7,0,0,29,29],
+"classgridfire_1_1_reaction_set.html#acfe2341ae1f016ad82098b6f5a1efc45":[5,0,0,30,3],
+"classgridfire_1_1_reaction_set.html#acfe2341ae1f016ad82098b6f5a1efc45":[7,0,0,29,3],
+"classgridfire_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99":[5,0,0,30,17],
+"classgridfire_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99":[7,0,0,29,17],
+"classgridfire_1_1_reaction_set.html#ad7e95562ea0860bf492b447341f41fb5":[5,0,0,30,5],
+"classgridfire_1_1_reaction_set.html#ad7e95562ea0860bf492b447341f41fb5":[7,0,0,29,5],
+"classgridfire_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1":[5,0,0,30,4],
+"classgridfire_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1":[7,0,0,29,4],
+"classgridfire_1_1_reaction_set.html#adb73fe9ff0178359409e2bea46a620c2":[5,0,0,30,7],
+"classgridfire_1_1_reaction_set.html#adb73fe9ff0178359409e2bea46a620c2":[7,0,0,29,7],
+"classgridfire_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387":[5,0,0,30,10],
+"classgridfire_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387":[7,0,0,29,10],
+"classgridfire_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf":[5,0,0,30,24],
+"classgridfire_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf":[7,0,0,29,24],
+"classgridfire_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111":[5,0,0,30,26],
+"classgridfire_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111":[7,0,0,29,26],
+"classgridfire_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb":[5,0,0,30,27],
+"classgridfire_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb":[7,0,0,29,27],
 "classgridfire_1_1approx8_1_1_approx8_network.html":[5,0,0,0,1],
 "classgridfire_1_1approx8_1_1_approx8_network.html":[7,0,0,0,1],
 "classgridfire_1_1approx8_1_1_approx8_network.html#a56426da6f1af7eb8a6d1cc70bc8e742a":[5,0,0,0,1,1],
@@ -185,69 +232,22 @@ var NAVTREEINDEX2 =
 "classgridfire_1_1approx8_1_1_approx8_network.html#abf9f13ff532917ddac4a7d987698836d":[7,0,0,0,1,8],
 "classgridfire_1_1approx8_1_1_approx8_network.html#aefed972081514c29cdaaa1efd857ad8d":[5,0,0,0,1,4],
 "classgridfire_1_1approx8_1_1_approx8_network.html#aefed972081514c29cdaaa1efd857ad8d":[7,0,0,0,1,4],
-"classgridfire_1_1exceptions_1_1_engine_error.html":[5,0,0,1,0],
+"classgridfire_1_1exceptions_1_1_engine_error.html":[5,0,0,2,0],
 "classgridfire_1_1exceptions_1_1_engine_error.html":[7,0,0,1,0],
-"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html":[5,0,0,1,1],
+"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html":[5,0,0,2,1],
 "classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html":[7,0,0,1,1],
-"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a77c9a660a2748c2e3a1c7e94edad1cf0":[5,0,0,1,1,2],
+"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a77c9a660a2748c2e3a1c7e94edad1cf0":[5,0,0,2,1,2],
 "classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a77c9a660a2748c2e3a1c7e94edad1cf0":[7,0,0,1,1,2],
-"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a9b9e8752798876d34a444f61fc2f509a":[5,0,0,1,1,0],
+"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a9b9e8752798876d34a444f61fc2f509a":[5,0,0,2,1,0],
 "classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a9b9e8752798876d34a444f61fc2f509a":[7,0,0,1,1,0],
-"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#afe87ef508f5b20ca99ec70510747caff":[5,0,0,1,1,1],
+"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#afe87ef508f5b20ca99ec70510747caff":[5,0,0,2,1,1],
 "classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#afe87ef508f5b20ca99ec70510747caff":[7,0,0,1,1,1],
-"classgridfire_1_1exceptions_1_1_network_resized_error.html":[5,0,0,1,2],
+"classgridfire_1_1exceptions_1_1_network_resized_error.html":[5,0,0,2,2],
 "classgridfire_1_1exceptions_1_1_network_resized_error.html":[7,0,0,1,2],
-"classgridfire_1_1exceptions_1_1_network_resized_error.html#a581527fc03fdd84a8309c147259ec09d":[5,0,0,1,2,2],
+"classgridfire_1_1exceptions_1_1_network_resized_error.html#a581527fc03fdd84a8309c147259ec09d":[5,0,0,2,2,2],
 "classgridfire_1_1exceptions_1_1_network_resized_error.html#a581527fc03fdd84a8309c147259ec09d":[7,0,0,1,2,2],
-"classgridfire_1_1exceptions_1_1_network_resized_error.html#a80c0adb088e8083309591d24051b056b":[5,0,0,1,2,0],
+"classgridfire_1_1exceptions_1_1_network_resized_error.html#a80c0adb088e8083309591d24051b056b":[5,0,0,2,2,0],
 "classgridfire_1_1exceptions_1_1_network_resized_error.html#a80c0adb088e8083309591d24051b056b":[7,0,0,1,2,0],
-"classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1":[5,0,0,1,2,1],
-"classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1":[7,0,0,1,2,1],
-"classgridfire_1_1exceptions_1_1_stale_engine_error.html":[5,0,0,1,3],
-"classgridfire_1_1exceptions_1_1_stale_engine_error.html":[7,0,0,1,3],
-"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4":[5,0,0,1,3,1],
-"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4":[7,0,0,1,3,1],
-"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb":[5,0,0,1,3,2],
-"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb":[7,0,0,1,3,2],
-"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50":[5,0,0,1,3,0],
-"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50":[7,0,0,1,3,0],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html":[5,0,0,1,4],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html":[7,0,0,1,4],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5":[5,0,0,1,4,5],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5":[7,0,0,1,4,5],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408":[5,0,0,1,4,8],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408":[7,0,0,1,4,8],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9":[5,0,0,1,4,7],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9":[7,0,0,1,4,7],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea":[5,0,0,1,4,4],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea":[7,0,0,1,4,4],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c":[5,0,0,1,4,6],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c":[7,0,0,1,4,6],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a7f9fa2e34da3772714723ef7d5083be5":[5,0,0,1,4,10],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a7f9fa2e34da3772714723ef7d5083be5":[7,0,0,1,4,10],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aac4899d001338688def2b809b55bb2ba":[5,0,0,1,4,9],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aac4899d001338688def2b809b55bb2ba":[7,0,0,1,4,9],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc":[5,0,0,1,4,2],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc":[7,0,0,1,4,2],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf":[5,0,0,1,4,3],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf":[7,0,0,1,4,3],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d":[5,0,0,1,4,1],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d":[7,0,0,1,4,1],
-"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html":[5,0,0,1,5],
-"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html":[7,0,0,1,5],
-"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69":[5,0,0,1,5,1],
-"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69":[7,0,0,1,5,1],
-"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#acb3183c3dea755a8a26b00d638183c30":[5,0,0,1,5,0],
-"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#acb3183c3dea755a8a26b00d638183c30":[7,0,0,1,5,0],
-"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047":[5,0,0,1,5,2],
-"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047":[7,0,0,1,5,2],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html":[5,0,0,3,0],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html":[7,0,0,3,0],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329":[5,0,0,3,0,3],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329":[7,0,0,3,0,3],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055":[5,0,0,3,0,1],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055":[7,0,0,3,0,1],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099":[5,0,0,3,0,5],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099":[7,0,0,3,0,5],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937":[5,0,0,3,0,6]
+"classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1":[5,0,0,2,2,1],
+"classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1":[7,0,0,1,2,1]
 };
diff --git a/docs/html/navtreeindex3.js b/docs/html/navtreeindex3.js
index d9c9363d..fa78e4cc 100644
--- a/docs/html/navtreeindex3.js
+++ b/docs/html/navtreeindex3.js
@@ -1,253 +1,253 @@
 var NAVTREEINDEX3 =
 {
+"classgridfire_1_1exceptions_1_1_stale_engine_error.html":[5,0,0,2,3],
+"classgridfire_1_1exceptions_1_1_stale_engine_error.html":[7,0,0,1,3],
+"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4":[5,0,0,2,3,1],
+"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4":[7,0,0,1,3,1],
+"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb":[5,0,0,2,3,2],
+"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb":[7,0,0,1,3,2],
+"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50":[5,0,0,2,3,0],
+"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50":[7,0,0,1,3,0],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html":[5,0,0,2,4],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html":[7,0,0,1,4],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5":[5,0,0,2,4,5],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5":[7,0,0,1,4,5],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408":[5,0,0,2,4,8],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408":[7,0,0,1,4,8],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9":[5,0,0,2,4,7],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9":[7,0,0,1,4,7],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea":[5,0,0,2,4,4],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea":[7,0,0,1,4,4],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c":[5,0,0,2,4,6],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c":[7,0,0,1,4,6],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a7f9fa2e34da3772714723ef7d5083be5":[5,0,0,2,4,10],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a7f9fa2e34da3772714723ef7d5083be5":[7,0,0,1,4,10],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aac4899d001338688def2b809b55bb2ba":[5,0,0,2,4,9],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aac4899d001338688def2b809b55bb2ba":[7,0,0,1,4,9],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc":[5,0,0,2,4,2],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc":[7,0,0,1,4,2],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf":[5,0,0,2,4,3],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf":[7,0,0,1,4,3],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d":[5,0,0,2,4,1],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d":[7,0,0,1,4,1],
+"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html":[5,0,0,2,5],
+"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html":[7,0,0,1,5],
+"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69":[5,0,0,2,5,1],
+"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69":[7,0,0,1,5,1],
+"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#acb3183c3dea755a8a26b00d638183c30":[5,0,0,2,5,0],
+"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#acb3183c3dea755a8a26b00d638183c30":[7,0,0,1,5,0],
+"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047":[5,0,0,2,5,2],
+"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047":[7,0,0,1,5,2],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html":[5,0,0,4,0],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html":[7,0,0,3,0],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329":[5,0,0,4,0,3],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329":[7,0,0,3,0,3],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055":[5,0,0,4,0,1],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055":[7,0,0,3,0,1],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099":[5,0,0,4,0,5],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099":[7,0,0,3,0,5],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937":[5,0,0,4,0,6],
 "classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937":[7,0,0,3,0,6],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c":[5,0,0,3,0,2],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c":[5,0,0,4,0,2],
 "classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c":[7,0,0,3,0,2],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d":[5,0,0,3,0,4],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d":[5,0,0,4,0,4],
 "classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d":[7,0,0,3,0,4],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b":[5,0,0,3,0,0],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b":[5,0,0,4,0,0],
 "classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b":[7,0,0,3,0,0],
-"classgridfire_1_1io_1_1_network_file_parser.html":[5,0,0,3,1],
+"classgridfire_1_1io_1_1_network_file_parser.html":[5,0,0,4,1],
 "classgridfire_1_1io_1_1_network_file_parser.html":[7,0,0,3,1],
-"classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf":[5,0,0,3,1,1],
+"classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf":[5,0,0,4,1,1],
 "classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf":[7,0,0,3,1,1],
-"classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3":[5,0,0,3,1,0],
+"classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3":[5,0,0,4,1,0],
 "classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3":[7,0,0,3,1,0],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html":[5,0,0,3,2],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html":[5,0,0,4,2],
 "classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html":[7,0,0,3,2],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874":[5,0,0,3,2,4],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874":[5,0,0,4,2,4],
 "classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874":[7,0,0,3,2,4],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8":[5,0,0,3,2,3],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8":[5,0,0,4,2,3],
 "classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8":[7,0,0,3,2,3],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de":[5,0,0,3,2,1],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de":[5,0,0,4,2,1],
 "classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de":[7,0,0,3,2,1],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66":[5,0,0,3,2,5],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66":[5,0,0,4,2,5],
 "classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66":[7,0,0,3,2,5],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036":[5,0,0,3,2,0],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036":[5,0,0,4,2,0],
 "classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036":[7,0,0,3,2,0],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993":[5,0,0,3,2,2],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993":[5,0,0,4,2,2],
 "classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993":[7,0,0,3,2,2],
-"classgridfire_1_1partition_1_1_composite_partition_function.html":[5,0,0,4,1],
+"classgridfire_1_1partition_1_1_composite_partition_function.html":[5,0,0,5,1],
 "classgridfire_1_1partition_1_1_composite_partition_function.html":[7,0,0,4,1],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b":[5,0,0,4,1,5],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b":[5,0,0,5,1,5],
 "classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b":[7,0,0,4,1,5],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88":[5,0,0,4,1,7],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88":[5,0,0,5,1,7],
 "classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88":[7,0,0,4,1,7],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a":[5,0,0,4,1,2],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a":[5,0,0,5,1,2],
 "classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a":[7,0,0,4,1,2],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8":[5,0,0,4,1,9],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8":[5,0,0,5,1,9],
 "classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8":[7,0,0,4,1,9],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b":[5,0,0,4,1,3],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b":[5,0,0,5,1,3],
 "classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b":[7,0,0,4,1,3],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#ac1bc5bedabef400fab6aceb477dbc6b9":[5,0,0,4,1,1],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#ac1bc5bedabef400fab6aceb477dbc6b9":[5,0,0,5,1,1],
 "classgridfire_1_1partition_1_1_composite_partition_function.html#ac1bc5bedabef400fab6aceb477dbc6b9":[7,0,0,4,1,1],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#ac8900afaa5edd24fcb8eaf19e7379183":[5,0,0,4,1,4],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#ac8900afaa5edd24fcb8eaf19e7379183":[5,0,0,5,1,4],
 "classgridfire_1_1partition_1_1_composite_partition_function.html#ac8900afaa5edd24fcb8eaf19e7379183":[7,0,0,4,1,4],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#ad80743933712de627c6a69d06d42ceb5":[5,0,0,4,1,0],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#ad80743933712de627c6a69d06d42ceb5":[5,0,0,5,1,0],
 "classgridfire_1_1partition_1_1_composite_partition_function.html#ad80743933712de627c6a69d06d42ceb5":[7,0,0,4,1,0],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b":[5,0,0,4,1,8],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b":[5,0,0,5,1,8],
 "classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b":[7,0,0,4,1,8],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c":[5,0,0,4,1,6],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c":[5,0,0,5,1,6],
 "classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c":[7,0,0,4,1,6],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html":[5,0,0,4,2],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html":[5,0,0,5,2],
 "classgridfire_1_1partition_1_1_ground_state_partition_function.html":[7,0,0,4,2],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0eff10c7b134d9d4081ad72bbc785c5b":[5,0,0,4,2,3],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0e75ec9b97529783e07953aaf7d70f68":[5,0,0,5,2,4],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0e75ec9b97529783e07953aaf7d70f68":[7,0,0,4,2,4],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0eff10c7b134d9d4081ad72bbc785c5b":[5,0,0,5,2,3],
 "classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0eff10c7b134d9d4081ad72bbc785c5b":[7,0,0,4,2,3],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd":[5,0,0,4,2,5],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd":[5,0,0,5,2,5],
 "classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd":[7,0,0,4,2,5],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a8afa2aee993eb3ed8d01c887d39b57eb":[5,0,0,4,2,0],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a8afa2aee993eb3ed8d01c887d39b57eb":[5,0,0,5,2,0],
 "classgridfire_1_1partition_1_1_ground_state_partition_function.html#a8afa2aee993eb3ed8d01c887d39b57eb":[7,0,0,4,2,0],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a99c80e2f4ba36e88e08e2abd650a08fb":[5,0,0,4,2,4],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a99c80e2f4ba36e88e08e2abd650a08fb":[7,0,0,4,2,4],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4":[5,0,0,4,2,1],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4":[5,0,0,5,2,1],
 "classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4":[7,0,0,4,2,1],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5":[5,0,0,4,2,2],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5":[5,0,0,5,2,2],
 "classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5":[7,0,0,4,2,2],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245":[5,0,0,4,2,7],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245":[5,0,0,5,2,7],
 "classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245":[7,0,0,4,2,7],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250":[5,0,0,4,2,6],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250":[5,0,0,5,2,6],
 "classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250":[7,0,0,4,2,6],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b":[5,0,0,4,2,8],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b":[5,0,0,5,2,8],
 "classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b":[7,0,0,4,2,8],
-"classgridfire_1_1partition_1_1_partition_function.html":[5,0,0,4,3],
+"classgridfire_1_1partition_1_1_partition_function.html":[5,0,0,5,3],
 "classgridfire_1_1partition_1_1_partition_function.html":[7,0,0,4,3],
-"classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817":[5,0,0,4,3,2],
+"classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817":[5,0,0,5,3,2],
 "classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817":[7,0,0,4,3,2],
-"classgridfire_1_1partition_1_1_partition_function.html#a14009bdaca47f3eddf2c6c023845db5a":[5,0,0,4,3,3],
+"classgridfire_1_1partition_1_1_partition_function.html#a14009bdaca47f3eddf2c6c023845db5a":[5,0,0,5,3,3],
 "classgridfire_1_1partition_1_1_partition_function.html#a14009bdaca47f3eddf2c6c023845db5a":[7,0,0,4,3,3],
-"classgridfire_1_1partition_1_1_partition_function.html#a197a0663dcfb4ab4be3b0e14b98391db":[5,0,0,4,3,0],
+"classgridfire_1_1partition_1_1_partition_function.html#a197a0663dcfb4ab4be3b0e14b98391db":[5,0,0,5,3,0],
 "classgridfire_1_1partition_1_1_partition_function.html#a197a0663dcfb4ab4be3b0e14b98391db":[7,0,0,4,3,0],
-"classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d":[5,0,0,4,3,1],
+"classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d":[5,0,0,5,3,1],
 "classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d":[7,0,0,4,3,1],
-"classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5":[5,0,0,4,3,4],
+"classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5":[5,0,0,5,3,4],
 "classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5":[7,0,0,4,3,4],
-"classgridfire_1_1partition_1_1_partition_function.html#ab0c67985a972707eac0ebc64417dfb97":[5,0,0,4,3,5],
+"classgridfire_1_1partition_1_1_partition_function.html#ab0c67985a972707eac0ebc64417dfb97":[5,0,0,5,3,5],
 "classgridfire_1_1partition_1_1_partition_function.html#ab0c67985a972707eac0ebc64417dfb97":[7,0,0,4,3,5],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html":[5,0,0,4,4],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html":[5,0,0,5,4],
 "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html":[7,0,0,4,4],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a12058e121981294f447e69a467fd84cd":[5,0,0,4,4,8],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a12058e121981294f447e69a467fd84cd":[5,0,0,5,4,8],
 "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a12058e121981294f447e69a467fd84cd":[7,0,0,4,4,8],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3aa478acf12e09b6dd268f744071b2a0":[5,0,0,4,4,12],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3aa478acf12e09b6dd268f744071b2a0":[5,0,0,5,4,12],
 "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3aa478acf12e09b6dd268f744071b2a0":[7,0,0,4,4,12],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3baed110ab1b12e22071dc2d92c55db9":[5,0,0,4,4,9],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3baed110ab1b12e22071dc2d92c55db9":[5,0,0,5,4,9],
 "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3baed110ab1b12e22071dc2d92c55db9":[7,0,0,4,4,9],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a50ce19df4c12e22bbcb61422248a4038":[5,0,0,4,4,14],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a50ce19df4c12e22bbcb61422248a4038":[5,0,0,5,4,14],
 "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a50ce19df4c12e22bbcb61422248a4038":[7,0,0,4,4,14],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6":[5,0,0,4,4,13],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6":[5,0,0,5,4,13],
 "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6":[7,0,0,4,4,13],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5":[5,0,0,4,4,11],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5":[5,0,0,5,4,11],
 "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5":[7,0,0,4,4,11],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329":[5,0,0,4,4,3],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329":[5,0,0,5,4,3],
 "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329":[7,0,0,4,4,3],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71":[5,0,0,4,4,3,0],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71":[5,0,0,5,4,3,0],
 "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71":[7,0,0,4,4,3,0],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735":[5,0,0,4,4,3,2],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735":[5,0,0,5,4,3,2],
 "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735":[7,0,0,4,4,3,2],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329ad8c6323fcc54dfc5319fbd935ae4f75d":[5,0,0,4,4,3,1],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329ad8c6323fcc54dfc5319fbd935ae4f75d":[5,0,0,5,4,3,1],
 "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329ad8c6323fcc54dfc5319fbd935ae4f75d":[7,0,0,4,4,3,1],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aaa1e11579b44a88c5f18943cc303c4b4":[5,0,0,4,4,7],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aaa1e11579b44a88c5f18943cc303c4b4":[5,0,0,5,4,7],
 "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aaa1e11579b44a88c5f18943cc303c4b4":[7,0,0,4,4,7],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec":[5,0,0,4,4,10],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec":[5,0,0,5,4,10],
 "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec":[7,0,0,4,4,10],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6":[5,0,0,4,4,5],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6":[5,0,0,5,4,5],
 "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6":[7,0,0,4,4,5],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c":[5,0,0,4,4,4],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c":[5,0,0,5,4,4],
 "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c":[7,0,0,4,4,4],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681":[5,0,0,4,4,6],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681":[5,0,0,5,4,6],
 "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681":[7,0,0,4,4,6],
-"classgridfire_1_1reaction_1_1_logical_reaction.html":[5,0,0,6,0],
-"classgridfire_1_1reaction_1_1_logical_reaction.html":[7,0,0,6,0],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a019b721d83741acdb16036f00739f87c":[5,0,0,6,0,7],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a019b721d83741acdb16036f00739f87c":[7,0,0,6,0,7],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a054994f733b44293b4d79f3a9b207560":[5,0,0,6,0,9],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a054994f733b44293b4d79f3a9b207560":[7,0,0,6,0,9],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a10cbea11653524dae2f7eafb5c22c90f":[5,0,0,6,0,12],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a10cbea11653524dae2f7eafb5c22c90f":[7,0,0,6,0,12],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a14a24cb8ea25a1514134acc51197f1de":[5,0,0,6,0,1],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a14a24cb8ea25a1514134acc51197f1de":[7,0,0,6,0,1],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a1d2fb3b6a6a1860ace98b32447d1dd1b":[5,0,0,6,0,6],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a1d2fb3b6a6a1860ace98b32447d1dd1b":[7,0,0,6,0,6],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a4ae3806e5e1a802b86a6de292d043476":[5,0,0,6,0,2],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a4ae3806e5e1a802b86a6de292d043476":[7,0,0,6,0,2],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a5d410de1053f8028faed1f0d0a6083f5":[5,0,0,6,0,3],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a5d410de1053f8028faed1f0d0a6083f5":[7,0,0,6,0,3],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a6965906ea33ebd0d615811219d9e9537":[5,0,0,6,0,0],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a6965906ea33ebd0d615811219d9e9537":[7,0,0,6,0,0],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a7fe91d24e20ebc76d612f6ad742f476f":[5,0,0,6,0,14],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a7fe91d24e20ebc76d612f6ad742f476f":[7,0,0,6,0,14],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a81f75f0085f8a5a45169f0b7240c809d":[5,0,0,6,0,13],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a81f75f0085f8a5a45169f0b7240c809d":[7,0,0,6,0,13],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#aa4b8d0d30459f360ff6e29d848e943d5":[5,0,0,6,0,4],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#aa4b8d0d30459f360ff6e29d848e943d5":[7,0,0,6,0,4],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#adad6f4297c1d8ce487eab092b73cdd32":[5,0,0,6,0,5],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#adad6f4297c1d8ce487eab092b73cdd32":[7,0,0,6,0,5],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#add094eda0e71126f8443698d7f3317f4":[5,0,0,6,0,11],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#add094eda0e71126f8443698d7f3317f4":[7,0,0,6,0,11],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#af8d23557326e6c8499fa4919ac0bd972":[5,0,0,6,0,8],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#af8d23557326e6c8499fa4919ac0bd972":[7,0,0,6,0,8],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#afa41050855b842c63db16c94d2e9b897":[5,0,0,6,0,10],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#afa41050855b842c63db16c94d2e9b897":[7,0,0,6,0,10],
-"classgridfire_1_1reaction_1_1_reaction.html":[5,0,0,6,2],
-"classgridfire_1_1reaction_1_1_reaction.html":[7,0,0,6,2],
-"classgridfire_1_1reaction_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6":[5,0,0,6,2,38],
-"classgridfire_1_1reaction_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6":[7,0,0,6,2,38],
-"classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c":[5,0,0,6,2,19],
-"classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c":[7,0,0,6,2,19],
-"classgridfire_1_1reaction_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2":[5,0,0,6,2,9],
-"classgridfire_1_1reaction_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2":[7,0,0,6,2,9],
-"classgridfire_1_1reaction_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905":[5,0,0,6,2,13],
-"classgridfire_1_1reaction_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905":[7,0,0,6,2,13],
-"classgridfire_1_1reaction_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9":[5,0,0,6,2,37],
-"classgridfire_1_1reaction_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9":[7,0,0,6,2,37],
-"classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b":[5,0,0,6,2,24],
-"classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b":[7,0,0,6,2,24],
-"classgridfire_1_1reaction_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b":[5,0,0,6,2,29],
-"classgridfire_1_1reaction_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b":[7,0,0,6,2,29],
-"classgridfire_1_1reaction_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97":[5,0,0,6,2,15],
-"classgridfire_1_1reaction_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97":[7,0,0,6,2,15],
-"classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8":[5,0,0,6,2,28],
-"classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8":[7,0,0,6,2,28],
-"classgridfire_1_1reaction_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51":[5,0,0,6,2,16],
-"classgridfire_1_1reaction_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51":[7,0,0,6,2,16],
-"classgridfire_1_1reaction_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061":[5,0,0,6,2,3],
-"classgridfire_1_1reaction_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061":[7,0,0,6,2,3],
-"classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0":[5,0,0,6,2,25],
-"classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0":[7,0,0,6,2,25],
-"classgridfire_1_1reaction_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e":[5,0,0,6,2,33],
-"classgridfire_1_1reaction_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e":[7,0,0,6,2,33],
-"classgridfire_1_1reaction_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b":[5,0,0,6,2,34],
-"classgridfire_1_1reaction_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b":[7,0,0,6,2,34],
-"classgridfire_1_1reaction_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b":[5,0,0,6,2,30],
-"classgridfire_1_1reaction_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b":[7,0,0,6,2,30],
-"classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629":[5,0,0,6,2,7],
-"classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629":[7,0,0,6,2,7],
-"classgridfire_1_1reaction_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248":[5,0,0,6,2,32],
-"classgridfire_1_1reaction_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248":[7,0,0,6,2,32],
-"classgridfire_1_1reaction_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af":[5,0,0,6,2,6],
-"classgridfire_1_1reaction_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af":[7,0,0,6,2,6],
-"classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02":[5,0,0,6,2,20],
-"classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02":[7,0,0,6,2,20],
-"classgridfire_1_1reaction_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4":[5,0,0,6,2,31],
-"classgridfire_1_1reaction_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4":[7,0,0,6,2,31],
-"classgridfire_1_1reaction_1_1_reaction.html#a735192a42f72cd68f289493753e1a616":[5,0,0,6,2,4],
-"classgridfire_1_1reaction_1_1_reaction.html#a735192a42f72cd68f289493753e1a616":[7,0,0,6,2,4],
-"classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97":[5,0,0,6,2,18],
-"classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97":[7,0,0,6,2,18],
-"classgridfire_1_1reaction_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224":[5,0,0,6,2,2],
-"classgridfire_1_1reaction_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224":[7,0,0,6,2,2],
-"classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c":[5,0,0,6,2,1],
-"classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c":[7,0,0,6,2,1],
-"classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923":[5,0,0,6,2,23],
-"classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923":[7,0,0,6,2,23],
-"classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e":[5,0,0,6,2,22],
-"classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e":[7,0,0,6,2,22],
-"classgridfire_1_1reaction_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11":[5,0,0,6,2,36],
-"classgridfire_1_1reaction_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11":[7,0,0,6,2,36],
-"classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5":[5,0,0,6,2,11],
-"classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5":[7,0,0,6,2,11],
-"classgridfire_1_1reaction_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72":[5,0,0,6,2,35],
-"classgridfire_1_1reaction_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72":[7,0,0,6,2,35],
-"classgridfire_1_1reaction_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba":[5,0,0,6,2,14],
-"classgridfire_1_1reaction_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba":[7,0,0,6,2,14],
-"classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac":[5,0,0,6,2,27],
-"classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac":[7,0,0,6,2,27],
-"classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a":[5,0,0,6,2,0],
-"classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a":[7,0,0,6,2,0],
-"classgridfire_1_1reaction_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b":[5,0,0,6,2,8],
-"classgridfire_1_1reaction_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b":[7,0,0,6,2,8],
-"classgridfire_1_1reaction_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45":[5,0,0,6,2,10],
-"classgridfire_1_1reaction_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45":[7,0,0,6,2,10],
-"classgridfire_1_1reaction_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8":[5,0,0,6,2,21],
-"classgridfire_1_1reaction_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8":[7,0,0,6,2,21],
-"classgridfire_1_1reaction_1_1_reaction.html#ac426457cf0a54a15b206549422083bac":[5,0,0,6,2,17],
-"classgridfire_1_1reaction_1_1_reaction.html#ac426457cf0a54a15b206549422083bac":[7,0,0,6,2,17],
-"classgridfire_1_1reaction_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3":[5,0,0,6,2,26],
-"classgridfire_1_1reaction_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3":[7,0,0,6,2,26],
-"classgridfire_1_1reaction_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec":[5,0,0,6,2,5],
-"classgridfire_1_1reaction_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec":[7,0,0,6,2,5],
-"classgridfire_1_1reaction_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5":[5,0,0,6,2,12],
-"classgridfire_1_1reaction_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5":[7,0,0,6,2,12],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html":[5,0,0,6,3],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html":[7,0,0,6,3],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a05f71d318564d880079fd6c96d59ae21":[5,0,0,6,3,6],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a05f71d318564d880079fd6c96d59ae21":[7,0,0,6,3,6],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a128660f5fbc67054f73811ed2982d24d":[5,0,0,6,3,18],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a128660f5fbc67054f73811ed2982d24d":[7,0,0,6,3,18],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a13e003529a17fa61aafdce3abd2dc773":[5,0,0,6,3,19],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a13e003529a17fa61aafdce3abd2dc773":[7,0,0,6,3,19],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a1596de3439735a45ac344fa85ace6c82":[5,0,0,6,3,14],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a1596de3439735a45ac344fa85ace6c82":[7,0,0,6,3,14],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a272800016c83f259f5c6a92dc797353c":[5,0,0,6,3,15],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a272800016c83f259f5c6a92dc797353c":[7,0,0,6,3,15],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a339dbbf883b6ae20e33d9782d8376bcf":[5,0,0,6,3,3],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a339dbbf883b6ae20e33d9782d8376bcf":[7,0,0,6,3,3],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a3a4c2448865580001fd3c797b9f56979":[5,0,0,6,3,26],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a3a4c2448865580001fd3c797b9f56979":[7,0,0,6,3,26],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a443ec5d7138764b32975232e13071ccf":[5,0,0,6,3,9],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a443ec5d7138764b32975232e13071ccf":[7,0,0,6,3,9],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a47265467dbf2c324ce3e4c85ebbaa6a7":[5,0,0,6,3,23],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a47265467dbf2c324ce3e4c85ebbaa6a7":[7,0,0,6,3,23],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a54c8cd7c34564277fe28eefc623f666e":[5,0,0,6,3,0],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a54c8cd7c34564277fe28eefc623f666e":[7,0,0,6,3,0],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5962968fe478c79250e9d88d80a87600":[5,0,0,6,3,27]
+"classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html":[5,0,0,6,0,5],
+"classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html":[7,0,0,5,0,5],
+"classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a1efafe82d25d36b93a60a6fccbd5ca3d":[5,0,0,6,0,5,1],
+"classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a1efafe82d25d36b93a60a6fccbd5ca3d":[7,0,0,5,0,5,1],
+"classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a48cec4c8f1e117f73d7e88c3597b4d16":[5,0,0,6,0,5,3],
+"classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a48cec4c8f1e117f73d7e88c3597b4d16":[7,0,0,5,0,5,3],
+"classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a7a01f956eccd3a0a90dd08984ca3f009":[5,0,0,6,0,5,6],
+"classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a7a01f956eccd3a0a90dd08984ca3f009":[7,0,0,5,0,5,6],
+"classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a976f84b6f6e33b5f3dd733a771afd7ba":[5,0,0,6,0,5,2],
+"classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a976f84b6f6e33b5f3dd733a771afd7ba":[7,0,0,5,0,5,2],
+"classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ac73e9476c89ec7066999b0986bc0d9c1":[5,0,0,6,0,5,5],
+"classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ac73e9476c89ec7066999b0986bc0d9c1":[7,0,0,5,0,5,5],
+"classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ae36a65c29c34b004111d266dc668107b":[5,0,0,6,0,5,4],
+"classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ae36a65c29c34b004111d266dc668107b":[7,0,0,5,0,5,4],
+"classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#afd3e0e1c5edaf12609b5fc81c379e3e5":[5,0,0,6,0,5,0],
+"classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#afd3e0e1c5edaf12609b5fc81c379e3e5":[7,0,0,5,0,5,0],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html":[5,0,0,6,0,7],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html":[7,0,0,5,0,7],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a05df0657efed55eb4262c7834d81400a":[5,0,0,6,0,7,8],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a05df0657efed55eb4262c7834d81400a":[7,0,0,5,0,7,8],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a091d6d4aa59f788c97f9b5481f46f1b5":[5,0,0,6,0,7,5],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a091d6d4aa59f788c97f9b5481f46f1b5":[7,0,0,5,0,7,5],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1210917ca1727ea474bb606cf8279edb":[5,0,0,6,0,7,20],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1210917ca1727ea474bb606cf8279edb":[7,0,0,5,0,7,20],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1362d46630f30203027093e35883d1b1":[5,0,0,6,0,7,25],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1362d46630f30203027093e35883d1b1":[7,0,0,5,0,7,25],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a14555633289fc3822e927afca7401e49":[5,0,0,6,0,7,15],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a14555633289fc3822e927afca7401e49":[7,0,0,5,0,7,15],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1f4acfdb39bb861aaee9f3f28cfc406e":[5,0,0,6,0,7,27],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1f4acfdb39bb861aaee9f3f28cfc406e":[7,0,0,5,0,7,27],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a222c0662bf5323037c9fdddfb929d4f7":[5,0,0,6,0,7,2],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a222c0662bf5323037c9fdddfb929d4f7":[7,0,0,5,0,7,2],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2567545c89eb847a15909b02fa0f383e":[5,0,0,6,0,7,34],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2567545c89eb847a15909b02fa0f383e":[7,0,0,5,0,7,34],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2f0ee4c0d52db0f58781f90dd39dc0f7":[5,0,0,6,0,7,30],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2f0ee4c0d52db0f58781f90dd39dc0f7":[7,0,0,5,0,7,30],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a37dfb1d460e78e81a6def62e7217e6f8":[5,0,0,6,0,7,37],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a37dfb1d460e78e81a6def62e7217e6f8":[7,0,0,5,0,7,37],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a3d1b52076e102d07acb7200a7ee99165":[5,0,0,6,0,7,38],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a3d1b52076e102d07acb7200a7ee99165":[7,0,0,5,0,7,38],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a4f2bf61b35566e439ac8a48da265d215":[5,0,0,6,0,7,29],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a4f2bf61b35566e439ac8a48da265d215":[7,0,0,5,0,7,29],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a5c60feacb0ac48b35323d9f688315316":[5,0,0,6,0,7,21],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a5c60feacb0ac48b35323d9f688315316":[7,0,0,5,0,7,21],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a6e567323ca019eadcbb9dbb814ebeb0b":[5,0,0,6,0,7,3],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a6e567323ca019eadcbb9dbb814ebeb0b":[7,0,0,5,0,7,3],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a745b161968f37873b5d40fe6bf9d2118":[5,0,0,6,0,7,11],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a745b161968f37873b5d40fe6bf9d2118":[7,0,0,5,0,7,11],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a79877bd387bd891e602adff3f99cb4c5":[5,0,0,6,0,7,31],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a79877bd387bd891e602adff3f99cb4c5":[7,0,0,5,0,7,31],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a7f0d21c80fbbf94ead613e678d44b835":[5,0,0,6,0,7,14],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a7f0d21c80fbbf94ead613e678d44b835":[7,0,0,5,0,7,14],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a8bf7dc26d9f1375625df99bceba08a44":[5,0,0,6,0,7,26],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a8bf7dc26d9f1375625df99bceba08a44":[7,0,0,5,0,7,26],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90b62d922d91832859516450cf8e3876":[5,0,0,6,0,7,19],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90b62d922d91832859516450cf8e3876":[7,0,0,5,0,7,19],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90ca346e2321516656b83d863416671e":[5,0,0,6,0,7,7],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90ca346e2321516656b83d863416671e":[7,0,0,5,0,7,7],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a92c3590161c63c6ed4e7650d2b7beee3":[5,0,0,6,0,7,39],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a92c3590161c63c6ed4e7650d2b7beee3":[7,0,0,5,0,7,39],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a957b5bfe70e536290ef677a7c5b6643f":[5,0,0,6,0,7,12],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a957b5bfe70e536290ef677a7c5b6643f":[7,0,0,5,0,7,12],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a98095e6536d9a6434c5955f4c169d505":[5,0,0,6,0,7,13],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a98095e6536d9a6434c5955f4c169d505":[7,0,0,5,0,7,13],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aa28f151d4ce14e0d6fcbecb07d03cd28":[5,0,0,6,0,7,9],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aa28f151d4ce14e0d6fcbecb07d03cd28":[7,0,0,5,0,7,9],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aade329265a26bdc005c0793ba7a36ab2":[5,0,0,6,0,7,28],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aade329265a26bdc005c0793ba7a36ab2":[7,0,0,5,0,7,28],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aae06ff559026e3ce242a42cdd888c5a0":[5,0,0,6,0,7,24],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aae06ff559026e3ce242a42cdd888c5a0":[7,0,0,5,0,7,24],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ab1be1d3010ff539b8a911506734fd9cf":[5,0,0,6,0,7,35],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ab1be1d3010ff539b8a911506734fd9cf":[7,0,0,5,0,7,35],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac10e1451d20876f6eab199e127f213c7":[5,0,0,6,0,7,10],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac10e1451d20876f6eab199e127f213c7":[7,0,0,5,0,7,10],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac2d5366d4b5766413db34558dbce3cb3":[5,0,0,6,0,7,6],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac2d5366d4b5766413db34558dbce3cb3":[7,0,0,5,0,7,6],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad01a15d95878c9edbf57cd9045c4413b":[5,0,0,6,0,7,18],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad01a15d95878c9edbf57cd9045c4413b":[7,0,0,5,0,7,18],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad2ba6b584cb2df7c15633fca81ce6af1":[5,0,0,6,0,7,17],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad2ba6b584cb2df7c15633fca81ce6af1":[7,0,0,5,0,7,17],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#adf203cbae7d7afcd274020b5210b426b":[5,0,0,6,0,7,32],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#adf203cbae7d7afcd274020b5210b426b":[7,0,0,5,0,7,32],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aeaceef054714e2a9667986406107ba3a":[5,0,0,6,0,7,36],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aeaceef054714e2a9667986406107ba3a":[7,0,0,5,0,7,36],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aed0ea28ed3ba96a9f86aa9db947ec01c":[5,0,0,6,0,7,22],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aed0ea28ed3ba96a9f86aa9db947ec01c":[7,0,0,5,0,7,22],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aee395d13ed3a515d5c1d69bedffca5de":[5,0,0,6,0,7,33],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aee395d13ed3a515d5c1d69bedffca5de":[7,0,0,5,0,7,33]
 };
diff --git a/docs/html/navtreeindex4.js b/docs/html/navtreeindex4.js
index 7544caf8..6356d879 100644
--- a/docs/html/navtreeindex4.js
+++ b/docs/html/navtreeindex4.js
@@ -1,253 +1,253 @@
 var NAVTREEINDEX4 =
 {
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5962968fe478c79250e9d88d80a87600":[7,0,0,6,3,27],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5fda3af5ea9ae0ecfb60a61a9e07f5b4":[5,0,0,6,3,24],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5fda3af5ea9ae0ecfb60a61a9e07f5b4":[7,0,0,6,3,24],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a638067a3e55ec2a422206055881aaaad":[5,0,0,6,3,20],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a638067a3e55ec2a422206055881aaaad":[7,0,0,6,3,20],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2":[5,0,0,6,3,22],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2":[7,0,0,6,3,22],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a7777ecd0f594fdf66ce57d22610fad3c":[5,0,0,6,3,8],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a7777ecd0f594fdf66ce57d22610fad3c":[7,0,0,6,3,8],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a87257704009fcd57b553f86cdaacb597":[5,0,0,6,3,4],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a87257704009fcd57b553f86cdaacb597":[7,0,0,6,3,4],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a89c4c5af12aef7fbfc24316c88237e22":[5,0,0,6,3,21],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a89c4c5af12aef7fbfc24316c88237e22":[7,0,0,6,3,21],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a9def4c9a3a7a03625b7c467fe7440428":[5,0,0,6,3,1],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a9def4c9a3a7a03625b7c467fe7440428":[7,0,0,6,3,1],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#aac76ec883b4ecebb2a94b2485dae7105":[5,0,0,6,3,16],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#aac76ec883b4ecebb2a94b2485dae7105":[7,0,0,6,3,16],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ab8cb5fbce6b819b9e4e44b0c2db54c6f":[5,0,0,6,3,7],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ab8cb5fbce6b819b9e4e44b0c2db54c6f":[7,0,0,6,3,7],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac128da7417955ef8c5cb2bde5a1293c9":[5,0,0,6,3,13],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac128da7417955ef8c5cb2bde5a1293c9":[7,0,0,6,3,13],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac42606350d7557106f7954b1f114c128":[5,0,0,6,3,10],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac42606350d7557106f7954b1f114c128":[7,0,0,6,3,10],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac510dce14a6033551318c0c7b241f3c8":[5,0,0,6,3,17],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac510dce14a6033551318c0c7b241f3c8":[7,0,0,6,3,17],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac6fcc5b08938b73ff6dac680e5bf28d9":[5,0,0,6,3,25],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac6fcc5b08938b73ff6dac680e5bf28d9":[7,0,0,6,3,25],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad19adbee44a71559a53785e3b1fc7e92":[5,0,0,6,3,12],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad19adbee44a71559a53785e3b1fc7e92":[7,0,0,6,3,12],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad870856d206d93f27125c88d44ff9e34":[5,0,0,6,3,11],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad870856d206d93f27125c88d44ff9e34":[7,0,0,6,3,11],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ada1d1880be53b81a9ed7b966fd6ade5a":[5,0,0,6,3,2],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ada1d1880be53b81a9ed7b966fd6ade5a":[7,0,0,6,3,2],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#aee42bb25973dadc6629bdb5cb1db6369":[5,0,0,6,3,5],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#aee42bb25973dadc6629bdb5cb1db6369":[7,0,0,6,3,5],
-"classgridfire_1_1screening_1_1_bare_screening_model.html":[5,0,0,7,0],
-"classgridfire_1_1screening_1_1_bare_screening_model.html":[7,0,0,7,0],
-"classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96":[5,0,0,7,0,0],
-"classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96":[7,0,0,7,0,0],
-"classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a":[5,0,0,7,0,1],
-"classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a":[7,0,0,7,0,1],
-"classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60":[5,0,0,7,0,3],
-"classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60":[7,0,0,7,0,3],
-"classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99":[5,0,0,7,0,2],
-"classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99":[7,0,0,7,0,2],
-"classgridfire_1_1screening_1_1_screening_model.html":[5,0,0,7,1],
-"classgridfire_1_1screening_1_1_screening_model.html":[7,0,0,7,1],
-"classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d":[5,0,0,7,1,0],
-"classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d":[7,0,0,7,1,0],
-"classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22":[5,0,0,7,1,2],
-"classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22":[7,0,0,7,1,2],
-"classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde":[5,0,0,7,1,3],
-"classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde":[7,0,0,7,1,3],
-"classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7":[5,0,0,7,1,1],
-"classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7":[7,0,0,7,1,1],
-"classgridfire_1_1screening_1_1_weak_screening_model.html":[5,0,0,7,2],
-"classgridfire_1_1screening_1_1_weak_screening_model.html":[7,0,0,7,2],
-"classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f":[5,0,0,7,2,3],
-"classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f":[7,0,0,7,2,3],
-"classgridfire_1_1screening_1_1_weak_screening_model.html#a2695206d46b9d2c2503f8e58c44df88f":[5,0,0,7,2,0],
-"classgridfire_1_1screening_1_1_weak_screening_model.html#a2695206d46b9d2c2503f8e58c44df88f":[7,0,0,7,2,0],
-"classgridfire_1_1screening_1_1_weak_screening_model.html#ac6bc78769670a460af1ff88284cb8ad4":[5,0,0,7,2,1],
-"classgridfire_1_1screening_1_1_weak_screening_model.html#ac6bc78769670a460af1ff88284cb8ad4":[7,0,0,7,2,1],
-"classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c":[5,0,0,7,2,2],
-"classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c":[7,0,0,7,2,2],
-"classgridfire_1_1solver_1_1_direct_network_solver.html":[5,0,0,8,0],
-"classgridfire_1_1solver_1_1_direct_network_solver.html":[7,0,0,8,0],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a053c9c1343af8f30ced69707e1d899e3":[5,0,0,8,0,4],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a053c9c1343af8f30ced69707e1d899e3":[7,0,0,8,0,4],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079":[5,0,0,8,0,9],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079":[7,0,0,8,0,9],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a":[5,0,0,8,0,5],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a":[7,0,0,8,0,5],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a171bd0c8c292da79ed41f6653fdd47df":[5,0,0,8,0,3],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a171bd0c8c292da79ed41f6653fdd47df":[7,0,0,8,0,3],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a2cc12e737a753a42b72a45be3fbfa8ab":[5,0,0,8,0,8],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a2cc12e737a753a42b72a45be3fbfa8ab":[7,0,0,8,0,8],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a44fbc45faa9e4b6864ac6b81282941b5":[5,0,0,8,0,7],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a44fbc45faa9e4b6864ac6b81282941b5":[7,0,0,8,0,7],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a6bb0738eef5669b3ad83a3c65a0d1e96":[5,0,0,8,0,6],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a6bb0738eef5669b3ad83a3c65a0d1e96":[7,0,0,8,0,6],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html":[5,0,0,8,1],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html":[7,0,0,8,1],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505":[5,0,0,8,1,0],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505":[7,0,0,8,1,0],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318":[5,0,0,8,1,1],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318":[7,0,0,8,1,1],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#a4d97ee85933d5e5f90d4194bb021a1dc":[5,0,0,8,1,4],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#a4d97ee85933d5e5f90d4194bb021a1dc":[7,0,0,8,1,4],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8":[5,0,0,8,1,5],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8":[7,0,0,8,1,5],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f":[5,0,0,8,1,3],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f":[7,0,0,8,1,3],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#ae09169769774f17df8701c42a64ed656":[5,0,0,8,1,2],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#ae09169769774f17df8701c42a64ed656":[7,0,0,8,1,2],
-"conceptgridfire_1_1_engine_type.html":[5,0,0,28],
-"conceptgridfire_1_1_engine_type.html":[6,0,1],
-"conceptgridfire_1_1_is_arithmetic_or_a_d.html":[5,0,0,27],
-"conceptgridfire_1_1_is_arithmetic_or_a_d.html":[6,0,0],
-"concepts.html":[6],
-"construction_8cpp.html":[8,0,1,1,0,0,0],
-"construction_8h.html":[8,0,1,0,0,0,0,0],
-"dir_048d8e0a5613c02d1dd32a8c2b4fae8e.html":[8,0,1,2,3],
-"dir_1ae9febcce3c81c54e014e2202672ae2.html":[8,0,1,2,2],
-"dir_1c671bae89ad45c4f6571bd7c3fca7f2.html":[8,0,1,0,0,3],
-"dir_1d1d50ce0d70b163d7d102a960190628.html":[8,0,1,0,0,4],
-"dir_3626e0c0e3c5d7812d6b277dfa4ec364.html":[8,0,1,0,0],
-"dir_3cc0b3e3c66436f74054a789a4a47fbc.html":[8,0,1,1,0],
-"dir_43d540904cac5d711ae55af9d63e6471.html":[8,0,1,1,0,0],
-"dir_49e56c817e5e54854c35e136979f97ca.html":[8,0,0],
-"dir_4eba3bf96e8b886928c6be1f4154164d.html":[8,0,1,2,6],
-"dir_4fd0dc9a50f7a53e22cb356c650f915e.html":[8,0,1,1,5],
-"dir_5c0d64f70903e893b1efe571a4b8de29.html":[8,0,1,2],
-"dir_64012712bac8d4927da7703e58c6c3c3.html":[8,0,1,2,7],
-"dir_65bc51589f8002bfcb72faf47ab41180.html":[8,0,1,1,1],
-"dir_68267d1309a1af8e8297ef4c3efbcdba.html":[8,0,1],
-"dir_6f67cad5a3dd5daef2b4bab22419acbf.html":[8,0,1,2,9],
-"dir_736d89e8e2b688d729ae4656e8c69720.html":[8,0,1,2,0,0],
-"dir_7eae81c2ec58ffa76af06bb25bb86137.html":[8,0,1,2,4],
-"dir_80d0745b866022f2047f807b3376dff7.html":[8,0,1,0,0,0,1],
-"dir_87d18a4dc5174905bfd7d2dc734defe6.html":[8,0,1,1,6],
-"dir_8e34b6fea5a3d13256b367f27bc2135d.html":[8,0,1,0,0,8],
-"dir_902e06e9d82d80b06df7be6e417fa9ee.html":[8,0,1,1,3],
-"dir_97105ebeaecd797c90bf23079fd9b0e6.html":[8,0,1,2,4,0],
-"dir_9f35e0f3e3878d201f80e9b6c966a769.html":[8,0,1,0,0,2],
-"dir_a2537f6f0ba382cc4200a69fb7d9b7da.html":[8,0,1,1,2,0],
-"dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html":[8,0,1,0,0,6],
-"dir_aff155d61c3b73b9ab7dcdc908c4d49e.html":[8,0,1,0,0,0],
-"dir_b0856f6b0d80ccb263b2f415c91f9e17.html":[8,0,1,0],
-"dir_b854c27c088682f074a57cfa949846df.html":[8,0,1,2,5],
-"dir_bf5ef66fceb9aacde9848923f7632729.html":[8,0,1,2,1],
-"dir_bfff093b02c380358955f421b7f67de5.html":[8,0,1,2,7,0],
-"dir_c34d5e8363cf0aa3fabc4f3fad3412a4.html":[8,0,0,0],
-"dir_c73541f51459c9e567d01a066f229f1c.html":[8,0,1,1,4],
-"dir_c85d3e3c5052e9ad9ce18c6863244a25.html":[8,0,1,1],
-"dir_cd87a60aa1dbf4ee960e0533fd7a9743.html":[8,0,1,0,0,1],
-"dir_d0a49494bbb6e91de214e6669adf5efa.html":[8,0,1,2,0],
-"dir_d5492b42d970deba31f48df1b35a6c47.html":[8,0,1,0,0,0,2],
-"dir_d70391a28a381da2f0629437a1b6db28.html":[8,0,1,2,8],
-"dir_dd8201c056cb17022d2864e6e5aa368d.html":[8,0,1,2,3,0],
-"dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html":[8,0,1,0,0,7],
-"dir_e87948a39c0c6c3f66d9f5f967ab86bd.html":[8,0,1,1,0,1],
-"dir_f2d7b0c77cb2532170ac94ead6e4ba70.html":[8,0,1,0,0,5],
-"dir_f575fd282ecf3769a887e0c3d3cafd55.html":[8,0,1,0,0,4,0],
-"dir_fe5109f07276e0a4a472af6b22fd99c7.html":[8,0,1,1,2],
-"dir_fe7d6b610561b6ccbae8c0cd892464cf.html":[8,0,1,2,6,0],
-"dir_fedd162cb41c94f7e299c266e75251fd.html":[8,0,1,0,0,0,0],
-"engine_2bindings_8cpp.html":[8,0,1,2,0,1],
-"engine_2bindings_8cpp.html#a01ff627d4ef6a21b3323cd383dd29841":[8,0,1,2,0,1,2],
-"engine_2bindings_8cpp.html#a4066aaf2dca39ee1ed37ad53169f1cdf":[8,0,1,2,0,1,1],
-"engine_2bindings_8cpp.html#a61b016667b7477d898be2a2a5bc7cab8":[8,0,1,2,0,1,3],
-"engine_2bindings_8cpp.html#a74a027923ac27f235cf565f8d2a355bd":[8,0,1,2,0,1,6],
-"engine_2bindings_8cpp.html#a884aac3c3f2e8c62843c69329052d642":[8,0,1,2,0,1,4],
-"engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c":[8,0,1,2,0,1,5],
-"engine_2bindings_8h.html":[8,0,1,2,0,2],
-"engine_2bindings_8h.html#a01ff627d4ef6a21b3323cd383dd29841":[8,0,1,2,0,2,1],
-"engine_2bindings_8h.html#a4066aaf2dca39ee1ed37ad53169f1cdf":[8,0,1,2,0,2,0],
-"engine_2bindings_8h.html#a61b016667b7477d898be2a2a5bc7cab8":[8,0,1,2,0,2,2],
-"engine_2bindings_8h.html#a73a2ec4150b3954550f16b97102ec993":[8,0,1,2,0,2,4],
-"engine_2bindings_8h.html#a74a027923ac27f235cf565f8d2a355bd":[8,0,1,2,0,2,5],
-"engine_2bindings_8h.html#a884aac3c3f2e8c62843c69329052d642":[8,0,1,2,0,2,3],
-"engine_8h.html":[8,0,1,0,0,0,3],
-"engine__abstract_8h.html":[8,0,1,0,0,0,4],
-"engine__adaptive_8cpp.html":[8,0,1,1,0,1,0],
-"engine__adaptive_8h.html":[8,0,1,0,0,0,2,0],
-"engine__approx8_8cpp.html":[8,0,1,1,0,2],
-"engine__approx8_8h.html":[8,0,1,0,0,0,5],
-"engine__defined_8cpp.html":[8,0,1,1,0,1,1],
-"engine__defined_8h.html":[8,0,1,0,0,0,2,1],
-"engine__graph_8cpp.html":[8,0,1,1,0,3],
-"engine__graph_8h.html":[8,0,1,0,0,0,6],
-"engine__multiscale_8cpp.html":[8,0,1,1,0,1,2],
-"engine__multiscale_8h.html":[8,0,1,0,0,0,2,2],
-"engine__priming_8cpp.html":[8,0,1,1,0,1,3],
-"engine__priming_8h.html":[8,0,1,0,0,0,2,3],
-"engine__procedures_8h.html":[8,0,1,0,0,0,0,1],
-"engine__types_8h.html":[8,0,1,0,0,0,1,1],
-"engine__view__abstract_8h.html":[8,0,1,0,0,0,2,4],
-"engine__views_8h.html":[8,0,1,0,0,0,2,5],
-"error__engine_8h.html":[8,0,1,0,0,1,0],
-"examples.html":[9],
-"exceptions_2bindings_8cpp.html":[8,0,1,2,1,0],
-"exceptions_2bindings_8cpp.html#a15a0d54e4fe015a87d9f7a63284c2958":[8,0,1,2,1,0,0],
-"exceptions_2bindings_8h.html":[8,0,1,2,1,1],
-"exceptions_2bindings_8h.html#a01725278af607be0d8f5a2d892a5ef73":[8,0,1,2,1,1,0],
-"exceptions_8h.html":[8,0,1,0,0,1,1],
-"expectations_2bindings_8cpp.html":[8,0,1,2,2,0],
-"expectations_2bindings_8cpp.html#ac6720822f6ad76636adbc1ae6febc2c2":[8,0,1,2,2,0,0],
-"expectations_2bindings_8h.html":[8,0,1,2,2,1],
-"expectations_2bindings_8h.html#a12e0304a6d29af179118a29c8ea93dc0":[8,0,1,2,2,1,0],
-"expectations_8h.html":[8,0,1,0,0,2,0],
-"expected__engine_8h.html":[8,0,1,0,0,2,1],
-"files.html":[8,0],
-"functions.html":[7,3,0],
-"functions.html":[7,3,0,0],
-"functions_b.html":[7,3,0,1],
-"functions_c.html":[7,3,0,2],
-"functions_d.html":[7,3,0,3],
-"functions_e.html":[7,3,0,4],
-"functions_enum.html":[7,3,4],
-"functions_eval.html":[7,3,5],
-"functions_f.html":[7,3,0,5],
-"functions_func.html":[7,3,1],
-"functions_func.html":[7,3,1,0],
-"functions_func_b.html":[7,3,1,1],
-"functions_func_c.html":[7,3,1,2],
-"functions_func_d.html":[7,3,1,3],
-"functions_func_e.html":[7,3,1,4],
-"functions_func_f.html":[7,3,1,5],
-"functions_func_g.html":[7,3,1,6],
-"functions_func_h.html":[7,3,1,7],
-"functions_func_i.html":[7,3,1,8],
-"functions_func_j.html":[7,3,1,9],
-"functions_func_l.html":[7,3,1,10],
-"functions_func_m.html":[7,3,1,11],
-"functions_func_n.html":[7,3,1,12],
-"functions_func_o.html":[7,3,1,13],
-"functions_func_p.html":[7,3,1,14],
-"functions_func_q.html":[7,3,1,15],
-"functions_func_r.html":[7,3,1,16],
-"functions_func_s.html":[7,3,1,17],
-"functions_func_t.html":[7,3,1,18],
-"functions_func_u.html":[7,3,1,19],
-"functions_func_v.html":[7,3,1,20],
-"functions_func_w.html":[7,3,1,21],
-"functions_func_~.html":[7,3,1,22],
-"functions_g.html":[7,3,0,6],
-"functions_h.html":[7,3,0,7],
-"functions_i.html":[7,3,0,8],
-"functions_j.html":[7,3,0,9],
-"functions_k.html":[7,3,0,10],
-"functions_l.html":[7,3,0,11],
-"functions_m.html":[7,3,0,12],
-"functions_n.html":[7,3,0,13],
-"functions_o.html":[7,3,0,14],
-"functions_p.html":[7,3,0,15],
-"functions_q.html":[7,3,0,16],
-"functions_r.html":[7,3,0,17],
-"functions_rela.html":[7,3,6],
-"functions_s.html":[7,3,0,18],
-"functions_t.html":[7,3,0,19],
-"functions_type.html":[7,3,3],
-"functions_u.html":[7,3,0,20],
-"functions_v.html":[7,3,0,21],
-"functions_vars.html":[7,3,2],
-"functions_vars.html":[7,3,2,0],
-"functions_vars_b.html":[7,3,2,1],
-"functions_vars_c.html":[7,3,2,2],
-"functions_vars_d.html":[7,3,2,3],
-"functions_vars_e.html":[7,3,2,4]
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aefc75b3149bee2da878177279ad375da":[5,0,0,6,0,7,16],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aefc75b3149bee2da878177279ad375da":[7,0,0,5,0,7,16],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#af515e3587a1050c4bc59657696be5f9b":[5,0,0,6,0,7,4],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#af515e3587a1050c4bc59657696be5f9b":[7,0,0,5,0,7,4],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#afedb724bf9f1c8fc91d853f2bedb10cb":[5,0,0,6,0,7,23],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#afedb724bf9f1c8fc91d853f2bedb10cb":[7,0,0,5,0,7,23],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html":[5,0,0,6,0,7,0],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html":[7,0,0,5,0,7,0],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a0beb567afdecd85e336b493ff85326bd":[5,0,0,6,0,7,0,5],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a0beb567afdecd85e336b493ff85326bd":[7,0,0,5,0,7,0,5],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a292dfe5fdfd3b90a36906f5f609a4c1c":[5,0,0,6,0,7,0,8],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a292dfe5fdfd3b90a36906f5f609a4c1c":[7,0,0,5,0,7,0,8],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a46d76ca50ee00198a9f4a873c6ceb874":[5,0,0,6,0,7,0,0],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a46d76ca50ee00198a9f4a873c6ceb874":[7,0,0,5,0,7,0,0],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a874efa5a57427c8afecd0375094da6e9":[5,0,0,6,0,7,0,6],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a874efa5a57427c8afecd0375094da6e9":[7,0,0,5,0,7,0,6],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a976a2ef2e58439429c1a6e94c27f4662":[5,0,0,6,0,7,0,1],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a976a2ef2e58439429c1a6e94c27f4662":[7,0,0,5,0,7,0,1],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#aad13654ea15547c2c95035c3b7937d58":[5,0,0,6,0,7,0,4],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#aad13654ea15547c2c95035c3b7937d58":[7,0,0,5,0,7,0,4],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ab4f12e8da29d4d158fb0adf2db31b4bb":[5,0,0,6,0,7,0,2],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ab4f12e8da29d4d158fb0adf2db31b4bb":[7,0,0,5,0,7,0,2],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae78d2a9b20c22a6ad624f4d968cbf639":[5,0,0,6,0,7,0,7],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae78d2a9b20c22a6ad624f4d968cbf639":[7,0,0,5,0,7,0,7],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae9d61bdda761da89733408c232d7220e":[5,0,0,6,0,7,0,3],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae9d61bdda761da89733408c232d7220e":[7,0,0,5,0,7,0,3],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html":[5,0,0,6,0,9],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html":[7,0,0,5,0,9],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a290da6766a6d3094a5aae8b7cbcd0d70":[5,0,0,6,0,9,3],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a290da6766a6d3094a5aae8b7cbcd0d70":[7,0,0,5,0,9,3],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a73cc5a9d4a236091bbb40f22ed66b2f1":[5,0,0,6,0,9,1],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a73cc5a9d4a236091bbb40f22ed66b2f1":[7,0,0,5,0,9,1],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a8169adef9b4b3c7552c7a8fdc945cf6f":[5,0,0,6,0,9,5],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a8169adef9b4b3c7552c7a8fdc945cf6f":[7,0,0,5,0,9,5],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a9ab9f6f64455eb46172ebda5e8cc3ec5":[5,0,0,6,0,9,2],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a9ab9f6f64455eb46172ebda5e8cc3ec5":[7,0,0,5,0,9,2],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#ad7345da84824495fb21c969c1a9c80f5":[5,0,0,6,0,9,4],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#ad7345da84824495fb21c969c1a9c80f5":[7,0,0,5,0,9,4],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#aecc8c1b92d63da87827879ad5330c11e":[5,0,0,6,0,9,0],
+"classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#aecc8c1b92d63da87827879ad5330c11e":[7,0,0,5,0,9,0],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html":[5,0,0,8,0],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html":[7,0,0,7,0],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a0ff112dca1f88070effb6700429b42b4":[5,0,0,8,0,0],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a0ff112dca1f88070effb6700429b42b4":[7,0,0,7,0,0],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a1353d7d2208497b38799bf69f574c275":[5,0,0,8,0,2],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a1353d7d2208497b38799bf69f574c275":[7,0,0,7,0,2],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a19462806927500f72b7d3f578b3040de":[5,0,0,8,0,5],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a19462806927500f72b7d3f578b3040de":[7,0,0,7,0,5],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a211b1332dc12a1fee942523dbc688272":[5,0,0,8,0,3],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a211b1332dc12a1fee942523dbc688272":[7,0,0,7,0,3],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a495ca800cc1dd224ce2a821a825afafd":[5,0,0,8,0,14],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a495ca800cc1dd224ce2a821a825afafd":[7,0,0,7,0,14],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a4c58951d9f7ab252717c226b0da80a9d":[5,0,0,8,0,11],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a4c58951d9f7ab252717c226b0da80a9d":[7,0,0,7,0,11],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a69508797ca0793f6d3f58de4e0b97667":[5,0,0,8,0,1],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a69508797ca0793f6d3f58de4e0b97667":[7,0,0,7,0,1],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a8c6f12a01c6d1fdeba1f0cc73128731e":[5,0,0,8,0,16],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a8c6f12a01c6d1fdeba1f0cc73128731e":[7,0,0,7,0,16],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a9b1363314159eaf9c56aaa233f5eebd6":[5,0,0,8,0,4],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a9b1363314159eaf9c56aaa233f5eebd6":[7,0,0,7,0,4],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ab5bdbe13239f1180f32fb0a14a60d0a9":[5,0,0,8,0,6],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ab5bdbe13239f1180f32fb0a14a60d0a9":[7,0,0,7,0,6],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ac21a726884930e6a00792e7c3eb43f42":[5,0,0,8,0,7],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ac21a726884930e6a00792e7c3eb43f42":[7,0,0,7,0,7],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#acbfa2d4e23dff6641be21cc1e754be15":[5,0,0,8,0,13],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#acbfa2d4e23dff6641be21cc1e754be15":[7,0,0,7,0,13],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad113b9cb64c449f9449c4cce4fa64076":[5,0,0,8,0,8],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad113b9cb64c449f9449c4cce4fa64076":[7,0,0,7,0,8],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad4979f437dc787a5475c3a029804ed99":[5,0,0,8,0,12],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad4979f437dc787a5475c3a029804ed99":[7,0,0,7,0,12],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ae0b38d499bf0c9ca58461ea2862a7d5a":[5,0,0,8,0,10],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ae0b38d499bf0c9ca58461ea2862a7d5a":[7,0,0,7,0,10],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#aefaf6c4c32ae54a2882da0e031632a74":[5,0,0,8,0,9],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#aefaf6c4c32ae54a2882da0e031632a74":[7,0,0,7,0,9],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#afe1b95bf9d81f7521b9f19bbd1305d01":[5,0,0,8,0,15],
+"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#afe1b95bf9d81f7521b9f19bbd1305d01":[7,0,0,7,0,15],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html":[5,0,0,8,2],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html":[7,0,0,7,2],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a06312f834439ccf93012dea53cab47ce":[5,0,0,8,2,14],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a06312f834439ccf93012dea53cab47ce":[7,0,0,7,2,14],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0b30c49925823c87980b4fca17c8282e":[5,0,0,8,2,12],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0b30c49925823c87980b4fca17c8282e":[7,0,0,7,2,12],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0f629cbfe95dc5643b5e3724be0db2f9":[5,0,0,8,2,27],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0f629cbfe95dc5643b5e3724be0db2f9":[7,0,0,7,2,27],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a171b690e1abaf23f11a94c39e9f8c944":[5,0,0,8,2,9],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a171b690e1abaf23f11a94c39e9f8c944":[7,0,0,7,2,9],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a181b2c75af1f2701c43594c5bb2bac2d":[5,0,0,8,2,15],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a181b2c75af1f2701c43594c5bb2bac2d":[7,0,0,7,2,15],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a264112a230817a6080c770686e5bcc01":[5,0,0,8,2,1],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a264112a230817a6080c770686e5bcc01":[7,0,0,7,2,1],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a3c0fbdd07f9a837bd031c5bdc58e0e8f":[5,0,0,8,2,29],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a3c0fbdd07f9a837bd031c5bdc58e0e8f":[7,0,0,7,2,29],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a445777acbbee2032d83a256181a90e3c":[5,0,0,8,2,2],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a445777acbbee2032d83a256181a90e3c":[7,0,0,7,2,2],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a498c202a259cbc315997ec68a2cb8a59":[5,0,0,8,2,36],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a498c202a259cbc315997ec68a2cb8a59":[7,0,0,7,2,36],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a4e4811436d09afaa4a14c51d9af71f88":[5,0,0,8,2,10],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a4e4811436d09afaa4a14c51d9af71f88":[7,0,0,7,2,10],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a51f658789f34f96e0e6bd42cef5cbfe4":[5,0,0,8,2,34],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a51f658789f34f96e0e6bd42cef5cbfe4":[7,0,0,7,2,34],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a54fde02e7010e806136f976ab64b1740":[5,0,0,8,2,8],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a54fde02e7010e806136f976ab64b1740":[7,0,0,7,2,8],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a57b2695d152360a6ba08776cc760e3a1":[5,0,0,8,2,28],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a57b2695d152360a6ba08776cc760e3a1":[7,0,0,7,2,28],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a5f563b99bb550d5bafa2a989502de019":[5,0,0,8,2,21],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a5f563b99bb550d5bafa2a989502de019":[7,0,0,7,2,21],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a65a12e5f6180873866cfaaf130fd1156":[5,0,0,8,2,11],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a65a12e5f6180873866cfaaf130fd1156":[7,0,0,7,2,11],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a661dd461e51c37133f7f9931389fd3cc":[5,0,0,8,2,13],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a661dd461e51c37133f7f9931389fd3cc":[7,0,0,7,2,13],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a67c8fa4d5929c7a8cbca9b3d9dd2b704":[5,0,0,8,2,20],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a67c8fa4d5929c7a8cbca9b3d9dd2b704":[7,0,0,7,2,20],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7cf403bc519ce39a1af886432a653826":[5,0,0,8,2,38],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7cf403bc519ce39a1af886432a653826":[7,0,0,7,2,38],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7e79437a68947e176b8dd7dcbe27baab":[5,0,0,8,2,40],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7e79437a68947e176b8dd7dcbe27baab":[7,0,0,7,2,40],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8b6008e0f629329bfc62256f4f081b77":[5,0,0,8,2,17],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8b6008e0f629329bfc62256f4f081b77":[7,0,0,7,2,17],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ca86e0f8f95ffb6d87ca295e44f14c5":[5,0,0,8,2,32],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ca86e0f8f95ffb6d87ca295e44f14c5":[7,0,0,7,2,32],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ea3de0412395b7b617c4b71cbc2ab68":[5,0,0,8,2,37],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ea3de0412395b7b617c4b71cbc2ab68":[7,0,0,7,2,37],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a9205126955ad38f56e8aca3112bc150a":[5,0,0,8,2,16],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a9205126955ad38f56e8aca3112bc150a":[7,0,0,7,2,16],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a96d4ab87de02e9b0be3c248e2e955b4b":[5,0,0,8,2,26],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#a96d4ab87de02e9b0be3c248e2e955b4b":[7,0,0,7,2,26],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#abab0ed78925789856ebb119d60c6a53d":[5,0,0,8,2,33],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#abab0ed78925789856ebb119d60c6a53d":[7,0,0,7,2,33],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#abe189c43e4d509d9d05dd205861ceddc":[5,0,0,8,2,7],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#abe189c43e4d509d9d05dd205861ceddc":[7,0,0,7,2,7],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#ac350a26bdf19d7c1d20db55a226e6063":[5,0,0,8,2,35],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#ac350a26bdf19d7c1d20db55a226e6063":[7,0,0,7,2,35],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#acd16b1daf13456b3523362a37b1bf9b0":[5,0,0,8,2,6],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#acd16b1daf13456b3523362a37b1bf9b0":[7,0,0,7,2,6],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad095aba46860fec0e68386bf04f7f142":[5,0,0,8,2,25],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad095aba46860fec0e68386bf04f7f142":[7,0,0,7,2,25],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad85ca288289b25d482cbb8e3ff270028":[5,0,0,8,2,24],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad85ca288289b25d482cbb8e3ff270028":[7,0,0,7,2,24],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656":[5,0,0,8,2,3],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656":[7,0,0,7,2,3],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#adbcb383bac0f47c66251ee1b7c5f539d":[5,0,0,8,2,31],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#adbcb383bac0f47c66251ee1b7c5f539d":[7,0,0,7,2,31],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#adfed51cf788a7ed4770cbd5945ddab2f":[5,0,0,8,2,23],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#adfed51cf788a7ed4770cbd5945ddab2f":[7,0,0,7,2,23],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae24ad1e38daab536aec6ac72c67e8615":[5,0,0,8,2,30],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae24ad1e38daab536aec6ac72c67e8615":[7,0,0,7,2,30],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae2b9b41a598c5f0dcd050b32985ea44e":[5,0,0,8,2,0],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae2b9b41a598c5f0dcd050b32985ea44e":[7,0,0,7,2,0],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae47931948f12816eb890c0db4fff4d68":[5,0,0,8,2,22],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae47931948f12816eb890c0db4fff4d68":[7,0,0,7,2,22],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae7c930525db447e39b4de18fbc1251a8":[5,0,0,8,2,18],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae7c930525db447e39b4de18fbc1251a8":[7,0,0,7,2,18],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#aeb177f9cf69e4f97c4518a27e6480523":[5,0,0,8,2,4],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#aeb177f9cf69e4f97c4518a27e6480523":[7,0,0,7,2,4],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#af52b42d940f6a09dba5d28898d2b0b1f":[5,0,0,8,2,39],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#af52b42d940f6a09dba5d28898d2b0b1f":[7,0,0,7,2,39],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#af775f97f4d5e144e33bc6e0ba58a5851":[5,0,0,8,2,19],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#af775f97f4d5e144e33bc6e0ba58a5851":[7,0,0,7,2,19],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#afec5ccf7a8fb1ba56c8cc852ce858c5e":[5,0,0,8,2,5],
+"classgridfire_1_1reaction_1_1_reaclib_reaction.html#afec5ccf7a8fb1ba56c8cc852ce858c5e":[7,0,0,7,2,5],
+"classgridfire_1_1reaction_1_1_reaction.html":[5,0,0,8,3],
+"classgridfire_1_1reaction_1_1_reaction.html":[7,0,0,7,3],
+"classgridfire_1_1reaction_1_1_reaction.html#a0d16572ae2b664374d32ee6c4e22123a":[5,0,0,8,3,15],
+"classgridfire_1_1reaction_1_1_reaction.html#a0d16572ae2b664374d32ee6c4e22123a":[7,0,0,7,3,15],
+"classgridfire_1_1reaction_1_1_reaction.html#a2708d2e8f42159df6605a5948b13c4c5":[5,0,0,8,3,9],
+"classgridfire_1_1reaction_1_1_reaction.html#a2708d2e8f42159df6605a5948b13c4c5":[7,0,0,7,3,9],
+"classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8":[5,0,0,8,3,23],
+"classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8":[7,0,0,7,3,23],
+"classgridfire_1_1reaction_1_1_reaction.html#a3906a668410e02239f9031b5fc580214":[5,0,0,8,3,13],
+"classgridfire_1_1reaction_1_1_reaction.html#a3906a668410e02239f9031b5fc580214":[7,0,0,7,3,13],
+"classgridfire_1_1reaction_1_1_reaction.html#a3d7451045d8df41ea98b5e419e0e5ab0":[5,0,0,8,3,16],
+"classgridfire_1_1reaction_1_1_reaction.html#a3d7451045d8df41ea98b5e419e0e5ab0":[7,0,0,7,3,16],
+"classgridfire_1_1reaction_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80":[5,0,0,8,3,2],
+"classgridfire_1_1reaction_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80":[7,0,0,7,3,2],
+"classgridfire_1_1reaction_1_1_reaction.html#a768db057d358240d4825c21869af0792":[5,0,0,8,3,8],
+"classgridfire_1_1reaction_1_1_reaction.html#a768db057d358240d4825c21869af0792":[7,0,0,7,3,8],
+"classgridfire_1_1reaction_1_1_reaction.html#a7ba8c18cd5445aa3499a6fd351183f7a":[5,0,0,8,3,11],
+"classgridfire_1_1reaction_1_1_reaction.html#a7ba8c18cd5445aa3499a6fd351183f7a":[7,0,0,7,3,11],
+"classgridfire_1_1reaction_1_1_reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c":[5,0,0,8,3,17],
+"classgridfire_1_1reaction_1_1_reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c":[7,0,0,7,3,17],
+"classgridfire_1_1reaction_1_1_reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7":[5,0,0,8,3,22],
+"classgridfire_1_1reaction_1_1_reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7":[7,0,0,7,3,22],
+"classgridfire_1_1reaction_1_1_reaction.html#a82c14096308cdc9126ab6d9667febcd2":[5,0,0,8,3,18],
+"classgridfire_1_1reaction_1_1_reaction.html#a82c14096308cdc9126ab6d9667febcd2":[7,0,0,7,3,18],
+"classgridfire_1_1reaction_1_1_reaction.html#a83c121480533593adfd68c4a67a649f1":[5,0,0,8,3,6],
+"classgridfire_1_1reaction_1_1_reaction.html#a83c121480533593adfd68c4a67a649f1":[7,0,0,7,3,6],
+"classgridfire_1_1reaction_1_1_reaction.html#a94b92308b9619ec20c690e55157786ba":[5,0,0,8,3,12],
+"classgridfire_1_1reaction_1_1_reaction.html#a94b92308b9619ec20c690e55157786ba":[7,0,0,7,3,12],
+"classgridfire_1_1reaction_1_1_reaction.html#aa13cd9097229fcc99128d9286b8f17e6":[5,0,0,8,3,1],
+"classgridfire_1_1reaction_1_1_reaction.html#aa13cd9097229fcc99128d9286b8f17e6":[7,0,0,7,3,1],
+"classgridfire_1_1reaction_1_1_reaction.html#aa2b615e764bb005e526ca9327319c735":[5,0,0,8,3,4],
+"classgridfire_1_1reaction_1_1_reaction.html#aa2b615e764bb005e526ca9327319c735":[7,0,0,7,3,4],
+"classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a":[5,0,0,8,3,0],
+"classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a":[7,0,0,7,3,0],
+"classgridfire_1_1reaction_1_1_reaction.html#ab28bf4f9417ecabcc8350bae449fedd5":[5,0,0,8,3,10],
+"classgridfire_1_1reaction_1_1_reaction.html#ab28bf4f9417ecabcc8350bae449fedd5":[7,0,0,7,3,10],
+"classgridfire_1_1reaction_1_1_reaction.html#ab7888b57507d6d27de6e5fcaea40fff5":[5,0,0,8,3,21],
+"classgridfire_1_1reaction_1_1_reaction.html#ab7888b57507d6d27de6e5fcaea40fff5":[7,0,0,7,3,21],
+"classgridfire_1_1reaction_1_1_reaction.html#ab95ce7fb022a9432bdc77f14679221ee":[5,0,0,8,3,7],
+"classgridfire_1_1reaction_1_1_reaction.html#ab95ce7fb022a9432bdc77f14679221ee":[7,0,0,7,3,7],
+"classgridfire_1_1reaction_1_1_reaction.html#ac7b08c61cdc97268b9442afec4d08dad":[5,0,0,8,3,19],
+"classgridfire_1_1reaction_1_1_reaction.html#ac7b08c61cdc97268b9442afec4d08dad":[7,0,0,7,3,19],
+"classgridfire_1_1reaction_1_1_reaction.html#ad49f4cad024db72c966d949c75f1ce4d":[5,0,0,8,3,20],
+"classgridfire_1_1reaction_1_1_reaction.html#ad49f4cad024db72c966d949c75f1ce4d":[7,0,0,7,3,20],
+"classgridfire_1_1reaction_1_1_reaction.html#ae2a1b0395ac127c792a8049cd0bcc249":[5,0,0,8,3,14],
+"classgridfire_1_1reaction_1_1_reaction.html#ae2a1b0395ac127c792a8049cd0bcc249":[7,0,0,7,3,14],
+"classgridfire_1_1reaction_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd":[5,0,0,8,3,3],
+"classgridfire_1_1reaction_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd":[7,0,0,7,3,3],
+"classgridfire_1_1reaction_1_1_reaction.html#af8303d67df61fc9e31ce054f0e8a3e14":[5,0,0,8,3,5],
+"classgridfire_1_1reaction_1_1_reaction.html#af8303d67df61fc9e31ce054f0e8a3e14":[7,0,0,7,3,5],
+"classgridfire_1_1reaction_1_1_reaction_set.html":[5,0,0,8,4],
+"classgridfire_1_1reaction_1_1_reaction_set.html":[7,0,0,7,4],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd":[5,0,0,8,4,23],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd":[7,0,0,7,4,23],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b":[5,0,0,8,4,16],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b":[7,0,0,7,4,16],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613":[5,0,0,8,4,6],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613":[7,0,0,7,4,6],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2":[5,0,0,8,4,12],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2":[7,0,0,7,4,12],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a2f6b165c86634a68f35032c2267255f8":[5,0,0,8,4,9],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a2f6b165c86634a68f35032c2267255f8":[7,0,0,7,4,9],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b":[5,0,0,8,4,22],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b":[7,0,0,7,4,22],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a436f9c4b8f8a4e115b19728d57d8e105":[5,0,0,8,4,15],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a436f9c4b8f8a4e115b19728d57d8e105":[7,0,0,7,4,15],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e":[5,0,0,8,4,11],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e":[7,0,0,7,4,11],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135":[5,0,0,8,4,20],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135":[7,0,0,7,4,20],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8":[5,0,0,8,4,18],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8":[7,0,0,7,4,18],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20":[5,0,0,8,4,25],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20":[7,0,0,7,4,25],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a":[5,0,0,8,4,13],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a":[7,0,0,7,4,13],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44":[5,0,0,8,4,28],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44":[7,0,0,7,4,28],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a789dee5d93810b85062e59508fe0adea":[5,0,0,8,4,1],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a789dee5d93810b85062e59508fe0adea":[7,0,0,7,4,1],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a896b4e492ef596d9174aeda4b59c46cd":[5,0,0,8,4,21],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a896b4e492ef596d9174aeda4b59c46cd":[7,0,0,7,4,21],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de":[5,0,0,8,4,0],
+"classgridfire_1_1reaction_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de":[7,0,0,7,4,0],
+"classgridfire_1_1reaction_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300":[5,0,0,8,4,8],
+"classgridfire_1_1reaction_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300":[7,0,0,7,4,8],
+"classgridfire_1_1reaction_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a":[5,0,0,8,4,19],
+"classgridfire_1_1reaction_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a":[7,0,0,7,4,19],
+"classgridfire_1_1reaction_1_1_reaction_set.html#ab9edff40316b42ce41b2f895962c1041":[5,0,0,8,4,2],
+"classgridfire_1_1reaction_1_1_reaction_set.html#ab9edff40316b42ce41b2f895962c1041":[7,0,0,7,4,2]
 };
diff --git a/docs/html/navtreeindex5.js b/docs/html/navtreeindex5.js
index e73424e4..ce891e47 100644
--- a/docs/html/navtreeindex5.js
+++ b/docs/html/navtreeindex5.js
@@ -1,253 +1,253 @@
 var NAVTREEINDEX5 =
 {
-"functions_vars_f.html":[7,3,2,5],
-"functions_vars_g.html":[7,3,2,6],
-"functions_vars_i.html":[7,3,2,7],
-"functions_vars_k.html":[7,3,2,8],
-"functions_vars_l.html":[7,3,2,9],
-"functions_vars_m.html":[7,3,2,10],
-"functions_vars_n.html":[7,3,2,11],
-"functions_vars_o.html":[7,3,2,12],
-"functions_vars_p.html":[7,3,2,13],
-"functions_vars_q.html":[7,3,2,14],
-"functions_vars_r.html":[7,3,2,15],
-"functions_vars_s.html":[7,3,2,16],
-"functions_vars_t.html":[7,3,2,17],
-"functions_vars_u.html":[7,3,2,18],
-"functions_vars_y.html":[7,3,2,19],
-"functions_vars_z.html":[7,3,2,20],
-"functions_w.html":[7,3,0,22],
-"functions_y.html":[7,3,0,23],
-"functions_z.html":[7,3,0,24],
-"functions_~.html":[7,3,0,25],
-"globals.html":[8,1,0],
-"globals_func.html":[8,1,1],
-"globals_type.html":[8,1,3],
-"globals_vars.html":[8,1,2],
-"hierarchy.html":[7,2],
-"index.html":[],
-"index.html#autotoc_md0":[0],
-"index.html#autotoc_md1":[0,0],
-"index.html#autotoc_md10":[1,1,1],
-"index.html#autotoc_md11":[1,2],
-"index.html#autotoc_md12":[1,2,0],
-"index.html#autotoc_md13":[1,2,0,0],
-"index.html#autotoc_md14":[1,2,0,1],
-"index.html#autotoc_md15":[1,2,1],
-"index.html#autotoc_md16":[1,2,1,0],
-"index.html#autotoc_md17":[1,2,1,1],
-"index.html#autotoc_md18":[1,2,1,2],
-"index.html#autotoc_md19":[1,2,1,2,0],
-"index.html#autotoc_md2":[0,1],
-"index.html#autotoc_md20":[1,2,1,2,1],
-"index.html#autotoc_md21":[1,2,1,2,2],
-"index.html#autotoc_md22":[1,2,2],
-"index.html#autotoc_md23":[1,2,3],
-"index.html#autotoc_md24":[1,2,3,0],
-"index.html#autotoc_md25":[1,2,4],
-"index.html#autotoc_md26":[1,2,5],
-"index.html#autotoc_md27":[1,3],
-"index.html#autotoc_md28":[1,4],
-"index.html#autotoc_md29":[1,4,0],
-"index.html#autotoc_md3":[1],
-"index.html#autotoc_md30":[1,4,1],
-"index.html#autotoc_md31":[1,4,2],
-"index.html#autotoc_md32":[1,4,3],
-"index.html#autotoc_md33":[1,5],
-"index.html#autotoc_md34":[1,6],
-"index.html#autotoc_md35":[1,6,0],
-"index.html#autotoc_md36":[1,7],
-"index.html#autotoc_md37":[1,7,0],
-"index.html#autotoc_md38":[1,7,1],
-"index.html#autotoc_md39":[1,7,1,0],
-"index.html#autotoc_md4":[1,0],
-"index.html#autotoc_md40":[1,7,1,1],
-"index.html#autotoc_md41":[1,7,2],
-"index.html#autotoc_md42":[1,7,3],
-"index.html#autotoc_md43":[1,7,4],
-"index.html#autotoc_md44":[1,8],
-"index.html#autotoc_md45":[2],
-"index.html#autotoc_md46":[2,0],
-"index.html#autotoc_md47":[2,0,0],
-"index.html#autotoc_md48":[2,0,1],
-"index.html#autotoc_md49":[2,0,2],
-"index.html#autotoc_md5":[1,0,0],
-"index.html#autotoc_md50":[2,0,3],
-"index.html#autotoc_md51":[2,0,3,0],
-"index.html#autotoc_md52":[2,0,4],
-"index.html#autotoc_md53":[2,0,4,0],
-"index.html#autotoc_md54":[2,1],
-"index.html#autotoc_md55":[2,1,0],
-"index.html#autotoc_md56":[2,1,1],
-"index.html#autotoc_md57":[3],
-"index.html#autotoc_md6":[1,0,1],
-"index.html#autotoc_md7":[1,0,2],
-"index.html#autotoc_md8":[1,1],
-"index.html#autotoc_md9":[1,1,0],
-"io_2bindings_8cpp.html":[8,0,1,2,3,1],
-"io_2bindings_8cpp.html#a7f552627cbe94906e0ee98b121e77862":[8,0,1,2,3,1,0],
-"io_2bindings_8h.html":[8,0,1,2,3,2],
-"io_2bindings_8h.html#a1d91b8298302b9f5401bf06c22651df4":[8,0,1,2,3,2,0],
-"io_8h.html":[8,0,1,0,0,3,0],
-"logging_8cpp.html":[8,0,1,1,6,0],
-"logging_8h.html":[8,0,1,0,0,8,0],
-"md_docs_2static_2usage.html":[4],
-"md_docs_2static_2usage.html#autotoc_md60":[4,0],
-"md_docs_2static_2usage.html#autotoc_md61":[4,0,0],
-"md_docs_2static_2usage.html#autotoc_md62":[4,0,1],
-"md_docs_2static_2usage.html#autotoc_md64":[4,1],
-"md_docs_2static_2usage.html#autotoc_md66":[4,2],
-"md_docs_2static_2usage.html#autotoc_md68":[4,3],
-"md_docs_2static_2usage.html#autotoc_md70":[4,4],
-"namespacegridfire.html":[5,0,0],
-"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57":[5,0,0,34],
-"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a100e3bf0197221c19b222badf42aa964":[5,0,0,34,4],
-"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a264572d66aed5373d19dc80c7cde1f46":[5,0,0,34,2],
-"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a3fc719e07f9f63e7f11a3d4fb74b476f":[5,0,0,34,3],
-"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a5105376c2b90747e00bed5bf2953dd56":[5,0,0,34,5],
-"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a928d0f1285ee7d36c1c2fa1b1b7a164c":[5,0,0,34,1],
-"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75":[5,0,0,34,0],
-"namespacegridfire.html#a02be158966bf82a91b159b7a962c3fa5":[5,0,0,48],
-"namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc":[5,0,0,29],
-"namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6":[5,0,0,30],
-"namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37":[5,0,0,35],
-"namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea":[5,0,0,35,0],
-"namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182":[5,0,0,35,1],
-"namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2":[5,0,0,35,2],
-"namespacegridfire.html#a4e9cabad30b57d636c2f0d73d8cc6bb4":[5,0,0,44],
-"namespacegridfire.html#a745c6568723947f8e1ff874c9d3f4733":[5,0,0,37],
-"namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d":[5,0,0,39],
-"namespacegridfire.html#a898dfe22579e649935645cbd6f073178":[5,0,0,33],
-"namespacegridfire.html#a8b245f261cd8d1711ae8d593b054cf98":[5,0,0,43],
-"namespacegridfire.html#a8b632637f62614f509cde0e404a79054":[5,0,0,49],
-"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154":[5,0,0,36],
-"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931":[5,0,0,36,5],
-"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287":[5,0,0,36,2],
-"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a":[5,0,0,36,0],
-"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45":[5,0,0,36,1],
-"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a":[5,0,0,36,4],
-"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e":[5,0,0,36,6],
-"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f":[5,0,0,36,3],
-"namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2":[5,0,0,40],
-"namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06":[5,0,0,45],
-"namespacegridfire.html#aa86f08712565f278adacc7cd2361eb31":[5,0,0,31],
-"namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f":[5,0,0,42],
-"namespacegridfire.html#ad838ce3fb6cc02c3fd90b924a0dd91b1":[5,0,0,32],
-"namespacegridfire.html#ada3c137c014ecd8d06200fea2d1a9f50":[5,0,0,46],
-"namespacegridfire.html#ae01b1738df1921db565bcbd68dd6cf64":[5,0,0,47],
-"namespacegridfire.html#aedddb89e400a6111f69bfe0c3fd4214e":[5,0,0,38],
-"namespacegridfire.html#aefc63ddbfe97dcb4178c94dfd1c4b256":[5,0,0,41],
-"namespacegridfire_1_1approx8.html":[5,0,0,0],
-"namespacegridfire_1_1approx8.html#a12cb71ba6ed03750af9e7659464197ea":[5,0,0,0,13],
-"namespacegridfire_1_1approx8.html#a16739298c01e56967ce784a9a957439f":[5,0,0,0,23],
-"namespacegridfire_1_1approx8.html#a20f9c48e60a5abf0b6868d1d05080222":[5,0,0,0,12],
-"namespacegridfire_1_1approx8.html#a2715e1a6421717991814892046b896e3":[5,0,0,0,26],
-"namespacegridfire_1_1approx8.html#a275aecf94e3145c2ff3d1756deda54ce":[5,0,0,0,4],
-"namespacegridfire_1_1approx8.html#a34f18b2345a8fd8d96bbe1a9825c1f21":[5,0,0,0,16],
-"namespacegridfire_1_1approx8.html#a3a9861a77093effdfc061743eb13fcdb":[5,0,0,0,15],
-"namespacegridfire_1_1approx8.html#a51d139de74680c8437d20a3fa622200c":[5,0,0,0,11],
-"namespacegridfire_1_1approx8.html#a593cd66c1eadae4da233ae73b4aad4a3":[5,0,0,0,14],
-"namespacegridfire_1_1approx8.html#a62c2f567dc1ada3816843c8586aad0dc":[5,0,0,0,22],
-"namespacegridfire_1_1approx8.html#a70eb18e9706ac28a308dcb4fcec7421f":[5,0,0,0,8],
-"namespacegridfire_1_1approx8.html#a7387008e672ea12d277e2194745a4c93":[5,0,0,0,21],
-"namespacegridfire_1_1approx8.html#a890ad24c2cdb15fb76a3ff8a7b8d77db":[5,0,0,0,10],
-"namespacegridfire_1_1approx8.html#a8c30b7e6099c5fc2aa94f9c68fd075dc":[5,0,0,0,9],
-"namespacegridfire_1_1approx8.html#a9a90b83dd4aa2dcc928bd14f4678dcef":[5,0,0,0,17],
-"namespacegridfire_1_1approx8.html#aa04f907d4ef6a1b6b2a9a28d4bb53882":[5,0,0,0,6],
-"namespacegridfire_1_1approx8.html#aaa49cb0c9ad4b0b9dd0f9b5e192ca12a":[5,0,0,0,5],
-"namespacegridfire_1_1approx8.html#aafd24448743672021dd4507316060817":[5,0,0,0,25],
-"namespacegridfire_1_1approx8.html#ac309c160c806208bf01bebeb29c23896":[5,0,0,0,18],
-"namespacegridfire_1_1approx8.html#acdbb3ee2ef22bfd9c836324285d0da98":[5,0,0,0,19],
-"namespacegridfire_1_1approx8.html#ad7a6f894fa4bdeebb4cae0eba3b2c210":[5,0,0,0,20],
-"namespacegridfire_1_1approx8.html#aed8175751b4920a53922f87f8c0e63c4":[5,0,0,0,24],
-"namespacegridfire_1_1approx8.html#af7d9b901dbb3c88c151d927912d5121f":[5,0,0,0,7],
-"namespacegridfire_1_1exceptions.html":[5,0,0,1],
-"namespacegridfire_1_1expectations.html":[5,0,0,2],
-"namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87c":[5,0,0,2,3],
-"namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca36fc6065a3e970bc3e6b2e59da52bf2a":[5,0,0,2,3,0],
-"namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca4d855a061b3066dc14a3b12ed26b5456":[5,0,0,2,3,2],
-"namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87cacb4ae3b37047fb4b2c0d16f8bf84f076":[5,0,0,2,3,1],
-"namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7":[5,0,0,2,4],
-"namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7a109aa03c8823fcc0ab193b7e48664cbf":[5,0,0,2,4,0],
-"namespacegridfire_1_1io.html":[5,0,0,3],
-"namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352":[5,0,0,3,3],
-"namespacegridfire_1_1partition.html":[5,0,0,4],
-"namespacegridfire_1_1partition.html#a1e08a3c20c55bc6fa4a4ecdf7ea57b8f":[5,0,0,4,7],
-"namespacegridfire_1_1partition.html#a84de6308486d35ce8bc1a9dea52dfa4a":[5,0,0,4,8],
-"namespacegridfire_1_1partition.html#a97237521bc760f7521346f8db472dc8e":[5,0,0,4,6],
-"namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728c":[5,0,0,4,5],
-"namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728ca4ca5b5dcd7343b06b860f05f3bc454b1":[5,0,0,4,5,0],
-"namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335":[5,0,0,4,5,1],
-"namespacegridfire_1_1partition_1_1record.html":[5,0,0,4,0],
-"namespacegridfire_1_1reaclib.html":[5,0,0,5],
-"namespacegridfire_1_1reaclib.html#a02ff11b88be94392151873e06a30b276":[5,0,0,5,2],
-"namespacegridfire_1_1reaclib.html#a5dba5efc372d2a9e9e846dfd6563f3c0":[5,0,0,5,5],
-"namespacegridfire_1_1reaclib.html#a6bb94d5adc7bb9db5a67f770f7453e63":[5,0,0,5,3],
-"namespacegridfire_1_1reaclib.html#a91c7971c9d0a2971b9a6fa4d841c761d":[5,0,0,5,1],
-"namespacegridfire_1_1reaclib.html#af6ff0dfe7ffe34c73ba9acbab5ef8a66":[5,0,0,5,6],
-"namespacegridfire_1_1reaclib.html#afc0deac6cbef076e8884e66fd3ab66e0":[5,0,0,5,4],
-"namespacegridfire_1_1reaction.html":[5,0,0,6],
-"namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31":[5,0,0,6,4],
-"namespacegridfire_1_1reaction.html#abfcfafc0cda0c3ed56930a12e7ead67f":[5,0,0,6,6],
-"namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1":[5,0,0,6,5],
-"namespacegridfire_1_1screening.html":[5,0,0,7],
-"namespacegridfire_1_1screening.html#a6ca8556d27ac373e176f5b23437c416e":[5,0,0,7,5],
-"namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25":[5,0,0,7,4],
-"namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8":[5,0,0,7,4,1],
-"namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71":[5,0,0,7,4,0],
-"namespacegridfire_1_1screening.html#ae7dd1a7ccb7bf3c05084094ab008d8a3":[5,0,0,7,3],
-"namespacegridfire_1_1solver.html":[5,0,0,8],
-"namespacegridfire_1_1solver.html#a8118d08bc25e439754b43a3f5ecc1db3":[5,0,0,8,3],
-"namespacegridfire_1_1utils.html":[5,0,0,9],
-"namespacegridfire_1_1utils.html#af56693a70d9e2b40c8ae2c3bcd4b26c8":[5,0,0,9,0],
-"namespacemembers.html":[5,1,0],
-"namespacemembers_enum.html":[5,1,4],
-"namespacemembers_eval.html":[5,1,5],
-"namespacemembers_func.html":[5,1,1],
-"namespacemembers_type.html":[5,1,3],
-"namespacemembers_vars.html":[5,1,2],
-"namespaces.html":[5,0],
-"namespacestd.html":[5,0,1],
-"network_8cpp.html":[8,0,1,1,7],
-"network_8h.html":[8,0,1,0,0,9],
-"network__file_8cpp.html":[8,0,1,1,1,0],
-"network__file_8h.html":[8,0,1,0,0,3,1],
-"pages.html":[],
-"partition_2bindings_8cpp.html":[8,0,1,2,4,1],
-"partition_2bindings_8cpp.html#a2806baaec82e0e6d66b80348584e08fd":[8,0,1,2,4,1,2],
-"partition_2bindings_8cpp.html#a4c0db94b56a3b02482ac4fd654680cca":[8,0,1,2,4,1,3],
-"partition_2bindings_8cpp.html#a4e56b30b36165067cf413787a55b9ecb":[8,0,1,2,4,1,4],
-"partition_2bindings_8cpp.html#ac36d0a5e8cb0122888fd218a143c7630":[8,0,1,2,4,1,1],
-"partition_2bindings_8cpp.html#ae405682b0e35624397583048f4d40f75":[8,0,1,2,4,1,5],
-"partition_2bindings_8cpp.html#afded1a99d32cbf8745a42e0a81891e18":[8,0,1,2,4,1,0],
-"partition_2bindings_8h.html":[8,0,1,2,4,2],
-"partition_2bindings_8h.html#a2806baaec82e0e6d66b80348584e08fd":[8,0,1,2,4,2,2],
-"partition_2bindings_8h.html#a4c0db94b56a3b02482ac4fd654680cca":[8,0,1,2,4,2,3],
-"partition_2bindings_8h.html#a4e56b30b36165067cf413787a55b9ecb":[8,0,1,2,4,2,4],
-"partition_2bindings_8h.html#ac36d0a5e8cb0122888fd218a143c7630":[8,0,1,2,4,2,1],
-"partition_2bindings_8h.html#ae405682b0e35624397583048f4d40f75":[8,0,1,2,4,2,5],
-"partition_2bindings_8h.html#afded1a99d32cbf8745a42e0a81891e18":[8,0,1,2,4,2,0],
-"partition_8h.html":[8,0,1,0,0,4,1],
-"partition__abstract_8h.html":[8,0,1,0,0,4,2],
-"partition__composite_8cpp.html":[8,0,1,1,2,0,0],
-"partition__composite_8h.html":[8,0,1,0,0,4,0,0],
-"partition__ground_8cpp.html":[8,0,1,1,2,1],
-"partition__ground_8h.html":[8,0,1,0,0,4,3],
-"partition__rauscher__thielemann_8cpp.html":[8,0,1,1,2,2],
-"partition__rauscher__thielemann_8h.html":[8,0,1,0,0,4,4],
-"partition__types_8h.html":[8,0,1,0,0,4,5],
-"priming_8cpp.html":[8,0,1,1,0,0,1],
-"priming_8h.html":[8,0,1,0,0,0,0,2],
-"py__engine_8cpp.html":[8,0,1,2,0,0,0],
-"py__engine_8h.html":[8,0,1,2,0,0,1],
-"py__io_8cpp.html":[8,0,1,2,3,0,0],
-"py__io_8h.html":[8,0,1,2,3,0,1],
-"py__partition_8cpp.html":[8,0,1,2,4,0,0],
-"py__partition_8h.html":[8,0,1,2,4,0,1],
-"py__screening_8cpp.html":[8,0,1,2,6,0,0],
-"py__screening_8cpp.html#a4c5a7b887f31226ce0b82409f819833b":[8,0,1,2,6,0,0,0],
-"py__screening_8h.html":[8,0,1,2,6,0,1],
-"py__solver_8cpp.html":[8,0,1,2,7,0,0],
-"py__solver_8h.html":[8,0,1,2,7,0,1],
-"rauscher__thielemann__partition__data_8h.html":[8,0,1,0,0,4,6]
+"classgridfire_1_1reaction_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987":[5,0,0,8,4,14],
+"classgridfire_1_1reaction_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987":[7,0,0,7,4,14],
+"classgridfire_1_1reaction_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe":[5,0,0,8,4,29],
+"classgridfire_1_1reaction_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe":[7,0,0,7,4,29],
+"classgridfire_1_1reaction_1_1_reaction_set.html#acfe2341ae1f016ad82098b6f5a1efc45":[5,0,0,8,4,3],
+"classgridfire_1_1reaction_1_1_reaction_set.html#acfe2341ae1f016ad82098b6f5a1efc45":[7,0,0,7,4,3],
+"classgridfire_1_1reaction_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99":[5,0,0,8,4,17],
+"classgridfire_1_1reaction_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99":[7,0,0,7,4,17],
+"classgridfire_1_1reaction_1_1_reaction_set.html#ad7e95562ea0860bf492b447341f41fb5":[5,0,0,8,4,5],
+"classgridfire_1_1reaction_1_1_reaction_set.html#ad7e95562ea0860bf492b447341f41fb5":[7,0,0,7,4,5],
+"classgridfire_1_1reaction_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1":[5,0,0,8,4,4],
+"classgridfire_1_1reaction_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1":[7,0,0,7,4,4],
+"classgridfire_1_1reaction_1_1_reaction_set.html#adb73fe9ff0178359409e2bea46a620c2":[5,0,0,8,4,7],
+"classgridfire_1_1reaction_1_1_reaction_set.html#adb73fe9ff0178359409e2bea46a620c2":[7,0,0,7,4,7],
+"classgridfire_1_1reaction_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387":[5,0,0,8,4,10],
+"classgridfire_1_1reaction_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387":[7,0,0,7,4,10],
+"classgridfire_1_1reaction_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf":[5,0,0,8,4,24],
+"classgridfire_1_1reaction_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf":[7,0,0,7,4,24],
+"classgridfire_1_1reaction_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111":[5,0,0,8,4,26],
+"classgridfire_1_1reaction_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111":[7,0,0,7,4,26],
+"classgridfire_1_1reaction_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb":[5,0,0,8,4,27],
+"classgridfire_1_1reaction_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb":[7,0,0,7,4,27],
+"classgridfire_1_1screening_1_1_bare_screening_model.html":[5,0,0,9,0],
+"classgridfire_1_1screening_1_1_bare_screening_model.html":[7,0,0,8,0],
+"classgridfire_1_1screening_1_1_bare_screening_model.html#a0ac3685a90c1e65a84e03cfb2fed29e5":[5,0,0,9,0,2],
+"classgridfire_1_1screening_1_1_bare_screening_model.html#a0ac3685a90c1e65a84e03cfb2fed29e5":[7,0,0,8,0,2],
+"classgridfire_1_1screening_1_1_bare_screening_model.html#a48a3392d735c61b15b4855c823acfada":[5,0,0,9,0,1],
+"classgridfire_1_1screening_1_1_bare_screening_model.html#a48a3392d735c61b15b4855c823acfada":[7,0,0,8,0,1],
+"classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96":[5,0,0,9,0,0],
+"classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96":[7,0,0,8,0,0],
+"classgridfire_1_1screening_1_1_bare_screening_model.html#ad252ce1de82401bab24747aabf0c8a3a":[5,0,0,9,0,3],
+"classgridfire_1_1screening_1_1_bare_screening_model.html#ad252ce1de82401bab24747aabf0c8a3a":[7,0,0,8,0,3],
+"classgridfire_1_1screening_1_1_intermediate_screening_model.html":[5,0,0,9,1],
+"classgridfire_1_1screening_1_1_intermediate_screening_model.html":[7,0,0,8,1],
+"classgridfire_1_1screening_1_1_intermediate_screening_model.html#a765e369256282f0f25e66e13c33dcbd9":[5,0,0,9,1,1],
+"classgridfire_1_1screening_1_1_intermediate_screening_model.html#a765e369256282f0f25e66e13c33dcbd9":[7,0,0,8,1,1],
+"classgridfire_1_1screening_1_1_intermediate_screening_model.html#a794b7781f07343383da3894208cfbfa9":[5,0,0,9,1,0],
+"classgridfire_1_1screening_1_1_intermediate_screening_model.html#a794b7781f07343383da3894208cfbfa9":[7,0,0,8,1,0],
+"classgridfire_1_1screening_1_1_intermediate_screening_model.html#a86a218ce82306ed582296cbeb3de0250":[5,0,0,9,1,2],
+"classgridfire_1_1screening_1_1_intermediate_screening_model.html#a86a218ce82306ed582296cbeb3de0250":[7,0,0,8,1,2],
+"classgridfire_1_1screening_1_1_screening_model.html":[5,0,0,9,2],
+"classgridfire_1_1screening_1_1_screening_model.html":[7,0,0,8,2],
+"classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d":[5,0,0,9,2,0],
+"classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d":[7,0,0,8,2,0],
+"classgridfire_1_1screening_1_1_screening_model.html#a1da8242c7591ab32453d1e0109999d6c":[5,0,0,9,2,2],
+"classgridfire_1_1screening_1_1_screening_model.html#a1da8242c7591ab32453d1e0109999d6c":[7,0,0,8,2,2],
+"classgridfire_1_1screening_1_1_screening_model.html#ab08c4490f9da18254a7c6f29be1f62ce":[5,0,0,9,2,3],
+"classgridfire_1_1screening_1_1_screening_model.html#ab08c4490f9da18254a7c6f29be1f62ce":[7,0,0,8,2,3],
+"classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7":[5,0,0,9,2,1],
+"classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7":[7,0,0,8,2,1],
+"classgridfire_1_1screening_1_1_weak_screening_model.html":[5,0,0,9,3],
+"classgridfire_1_1screening_1_1_weak_screening_model.html":[7,0,0,8,3],
+"classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f":[5,0,0,9,3,3],
+"classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f":[7,0,0,8,3,3],
+"classgridfire_1_1screening_1_1_weak_screening_model.html#a6a215d082b0d05126fb2b19fd1983446":[5,0,0,9,3,2],
+"classgridfire_1_1screening_1_1_weak_screening_model.html#a6a215d082b0d05126fb2b19fd1983446":[7,0,0,8,3,2],
+"classgridfire_1_1screening_1_1_weak_screening_model.html#a8b0590814e7058b4ff3f0cd6f4124773":[5,0,0,9,3,1],
+"classgridfire_1_1screening_1_1_weak_screening_model.html#a8b0590814e7058b4ff3f0cd6f4124773":[7,0,0,8,3,1],
+"classgridfire_1_1screening_1_1_weak_screening_model.html#aa9f95ba8c052dacb72295775516b7e5f":[5,0,0,9,3,0],
+"classgridfire_1_1screening_1_1_weak_screening_model.html#aa9f95ba8c052dacb72295775516b7e5f":[7,0,0,8,3,0],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html":[5,0,0,10,0],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html":[7,0,0,9,0],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a0717afcde6fdb71b12490bbcadb5fdb4":[5,0,0,10,0,31],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a0717afcde6fdb71b12490bbcadb5fdb4":[7,0,0,9,0,31],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a14c620ef75749c8ef3dfdb84132e5620":[5,0,0,10,0,10],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a14c620ef75749c8ef3dfdb84132e5620":[7,0,0,9,0,10],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a1f007d68e808ba61f8425d0487432c0d":[5,0,0,10,0,6],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a1f007d68e808ba61f8425d0487432c0d":[7,0,0,9,0,6],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a202fe9e6499aac5f6813e036ee4ed2d5":[5,0,0,10,0,21],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a202fe9e6499aac5f6813e036ee4ed2d5":[7,0,0,9,0,21],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a2fa56a2e7a63d31d2afa895a5e4fe827":[5,0,0,10,0,5],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a2fa56a2e7a63d31d2afa895a5e4fe827":[7,0,0,9,0,5],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a38e0f02ba54e217e9638260d9651b1c3":[5,0,0,10,0,7],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a38e0f02ba54e217e9638260d9651b1c3":[7,0,0,9,0,7],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a46dacb6eb075f2aadac0e56972deeaa3":[5,0,0,10,0,19],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a46dacb6eb075f2aadac0e56972deeaa3":[7,0,0,9,0,19],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50c7b4e1ff2c88ce424c745478414e30":[5,0,0,10,0,20],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50c7b4e1ff2c88ce424c745478414e30":[7,0,0,9,0,20],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50d8f309ca897fa83b16db0a1701b339":[5,0,0,10,0,22],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50d8f309ca897fa83b16db0a1701b339":[7,0,0,9,0,22],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a53c14f504e5b7827b4bab4a0a7a13341":[5,0,0,10,0,15],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a53c14f504e5b7827b4bab4a0a7a13341":[7,0,0,9,0,15],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5867eb99b00815b8b4f710cb48904dbe":[5,0,0,10,0,25],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5867eb99b00815b8b4f710cb48904dbe":[7,0,0,9,0,25],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5dfb7a2ce0008d41dee4aa596a4e1ce4":[5,0,0,10,0,11],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5dfb7a2ce0008d41dee4aa596a4e1ce4":[7,0,0,9,0,11],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a77638ef3d2279009e5a57bbd3f0eb63b":[5,0,0,10,0,18],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a77638ef3d2279009e5a57bbd3f0eb63b":[7,0,0,9,0,18],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a7f6786780137de1a136e081c537a9667":[5,0,0,10,0,8],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a7f6786780137de1a136e081c537a9667":[7,0,0,9,0,8],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a87b7b39e2a15cc30b118c8e6fda9a1a6":[5,0,0,10,0,13],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a87b7b39e2a15cc30b118c8e6fda9a1a6":[7,0,0,9,0,13],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a89c537c2f34ba3e202374304b7e5990a":[5,0,0,10,0,2],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a89c537c2f34ba3e202374304b7e5990a":[7,0,0,9,0,2],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a924a541da3b205818f90b50d675631c0":[5,0,0,10,0,3],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a924a541da3b205818f90b50d675631c0":[7,0,0,9,0,3],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aae19c1ec467051404a7bf1d4c7066c22":[5,0,0,10,0,30],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aae19c1ec467051404a7bf1d4c7066c22":[7,0,0,9,0,30],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab5a8fa55e36685cac50c1dbdd8dbfa57":[5,0,0,10,0,23],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab5a8fa55e36685cac50c1dbdd8dbfa57":[7,0,0,9,0,23],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab7495898e893640670f49308a105658f":[5,0,0,10,0,27],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab7495898e893640670f49308a105658f":[7,0,0,9,0,27],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab8224d205ea3a28d9c723631c2f00b53":[5,0,0,10,0,12],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab8224d205ea3a28d9c723631c2f00b53":[7,0,0,9,0,12],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ac57a4f62d95d769c379470e680e6882d":[5,0,0,10,0,29],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ac57a4f62d95d769c379470e680e6882d":[7,0,0,9,0,29],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aca2d01a907c3bb828f9f99ad05506578":[5,0,0,10,0,4],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aca2d01a907c3bb828f9f99ad05506578":[7,0,0,9,0,4],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ad26879fafcee9ecb21cc7c5ac0db1692":[5,0,0,10,0,17],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ad26879fafcee9ecb21cc7c5ac0db1692":[7,0,0,9,0,17],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ae13fc9c21f595edbee1c9b7debaa61b3":[5,0,0,10,0,9],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ae13fc9c21f595edbee1c9b7debaa61b3":[7,0,0,9,0,9],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af3e470b5a6f982c107785c64b169a992":[5,0,0,10,0,28],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af3e470b5a6f982c107785c64b169a992":[7,0,0,9,0,28],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af4a2f003a4c4c06b4b72840f2d445f81":[5,0,0,10,0,26],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af4a2f003a4c4c06b4b72840f2d445f81":[7,0,0,9,0,26],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af500df838024c82724eaf7fe1cb9b8e8":[5,0,0,10,0,16],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af500df838024c82724eaf7fe1cb9b8e8":[7,0,0,9,0,16],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afc6c55237df4af240c4c842305085d91":[5,0,0,10,0,14],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afc6c55237df4af240c4c842305085d91":[7,0,0,9,0,14],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afd1053d0827512b6831ee15f14488c20":[5,0,0,10,0,24],
+"classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afd1053d0827512b6831ee15f14488c20":[7,0,0,9,0,24],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html":[5,0,0,10,1],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html":[7,0,0,9,1],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505":[5,0,0,10,1,0],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505":[7,0,0,9,1,0],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318":[5,0,0,10,1,1],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318":[7,0,0,9,1,1],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#a4d97ee85933d5e5f90d4194bb021a1dc":[5,0,0,10,1,4],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#a4d97ee85933d5e5f90d4194bb021a1dc":[7,0,0,9,1,4],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8":[5,0,0,10,1,5],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8":[7,0,0,9,1,5],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f":[5,0,0,10,1,3],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f":[7,0,0,9,1,3],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#ae09169769774f17df8701c42a64ed656":[5,0,0,10,1,2],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#ae09169769774f17df8701c42a64ed656":[7,0,0,9,1,2],
+"classgridfire_1_1trigger_1_1_and_trigger.html":[5,0,0,11,1],
+"classgridfire_1_1trigger_1_1_and_trigger.html":[7,0,0,10,1],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a01033721e8f5d90483d65c904399cf96":[5,0,0,11,1,9],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a01033721e8f5d90483d65c904399cf96":[7,0,0,10,1,9],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a1714656e907edfcba2d354ff5d7c9ceb":[5,0,0,11,1,13],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a1714656e907edfcba2d354ff5d7c9ceb":[7,0,0,10,1,13],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a2436d8643911ade907e03fb29531ceaa":[5,0,0,11,1,7],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a2436d8643911ade907e03fb29531ceaa":[7,0,0,10,1,7],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a2dcd635c6bdbcfe517adca6e2bd5c408":[5,0,0,11,1,3],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a2dcd635c6bdbcfe517adca6e2bd5c408":[7,0,0,10,1,3],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a2ee18348ca65cc1aa56eb41292a39bc5":[5,0,0,11,1,1],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a2ee18348ca65cc1aa56eb41292a39bc5":[7,0,0,10,1,1],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a43e6a9c01b163ab92a0b413bfba52ef5":[5,0,0,11,1,12],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a43e6a9c01b163ab92a0b413bfba52ef5":[7,0,0,10,1,12],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a62f7dbbcf0554caa68e3d778580b3c1d":[5,0,0,11,1,8],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a62f7dbbcf0554caa68e3d778580b3c1d":[7,0,0,10,1,8],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a7f88c1139e1b05baed44614104d601b4":[5,0,0,11,1,15],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a7f88c1139e1b05baed44614104d601b4":[7,0,0,10,1,15],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a969738baf0bda97664715937d4bc403e":[5,0,0,11,1,0],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a969738baf0bda97664715937d4bc403e":[7,0,0,10,1,0],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a99be74b126d50c15d21c0724d933af87":[5,0,0,11,1,10],
+"classgridfire_1_1trigger_1_1_and_trigger.html#a99be74b126d50c15d21c0724d933af87":[7,0,0,10,1,10],
+"classgridfire_1_1trigger_1_1_and_trigger.html#aaefdfa86856f9f7839b6a7fdffa4a579":[5,0,0,11,1,2],
+"classgridfire_1_1trigger_1_1_and_trigger.html#aaefdfa86856f9f7839b6a7fdffa4a579":[7,0,0,10,1,2],
+"classgridfire_1_1trigger_1_1_and_trigger.html#ab78539e5cd88194ab9e98434793eae3f":[5,0,0,11,1,4],
+"classgridfire_1_1trigger_1_1_and_trigger.html#ab78539e5cd88194ab9e98434793eae3f":[7,0,0,10,1,4],
+"classgridfire_1_1trigger_1_1_and_trigger.html#addfd61f8cb234881f535fb8f4d618d74":[5,0,0,11,1,5],
+"classgridfire_1_1trigger_1_1_and_trigger.html#addfd61f8cb234881f535fb8f4d618d74":[7,0,0,10,1,5],
+"classgridfire_1_1trigger_1_1_and_trigger.html#ae3ff88ddb15d04e798fc03c6c941e312":[5,0,0,11,1,14],
+"classgridfire_1_1trigger_1_1_and_trigger.html#ae3ff88ddb15d04e798fc03c6c941e312":[7,0,0,10,1,14],
+"classgridfire_1_1trigger_1_1_and_trigger.html#af8ee88421d0dfd92de6df96d686ece38":[5,0,0,11,1,11],
+"classgridfire_1_1trigger_1_1_and_trigger.html#af8ee88421d0dfd92de6df96d686ece38":[7,0,0,10,1,11],
+"classgridfire_1_1trigger_1_1_and_trigger.html#afffb4281569963183d7db3ed1568eb3a":[5,0,0,11,1,6],
+"classgridfire_1_1trigger_1_1_and_trigger.html#afffb4281569963183d7db3ed1568eb3a":[7,0,0,10,1,6],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html":[5,0,0,11,2],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html":[7,0,0,10,2],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a021c30d6db015bb88a70af348a5dd336":[5,0,0,11,2,12],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a021c30d6db015bb88a70af348a5dd336":[7,0,0,10,2,12],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0a5c2c5aedc779c1535d3839c6a6596e":[5,0,0,11,2,13],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0a5c2c5aedc779c1535d3839c6a6596e":[7,0,0,10,2,13],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0dd783afab7ef6005f0241f9de7b31f6":[5,0,0,11,2,8],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0dd783afab7ef6005f0241f9de7b31f6":[7,0,0,10,2,8],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a27f1fd8c8a93576f83a4f3320469c83a":[5,0,0,11,2,10],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a27f1fd8c8a93576f83a4f3320469c83a":[7,0,0,10,2,10],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a3bf0d69122f801deca4b62db47262d9b":[5,0,0,11,2,9],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a3bf0d69122f801deca4b62db47262d9b":[7,0,0,10,2,9],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a4a834d24286f9204995bf78fb69f35dc":[5,0,0,11,2,4],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a4a834d24286f9204995bf78fb69f35dc":[7,0,0,10,2,4],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a652ba8d1ac36b9713f426eedf2b1ead0":[5,0,0,11,2,14],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a652ba8d1ac36b9713f426eedf2b1ead0":[7,0,0,10,2,14],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69e5a3061926e1cd36fbd0a5285fa0a7":[5,0,0,11,2,0],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69e5a3061926e1cd36fbd0a5285fa0a7":[7,0,0,10,2,0],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69fbb099f8d13d39602f58fa8aa8e7f2":[5,0,0,11,2,2],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69fbb099f8d13d39602f58fa8aa8e7f2":[7,0,0,10,2,2],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a7e5568c9d7799b7f80ad0d3efe2cd143":[5,0,0,11,2,6],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a7e5568c9d7799b7f80ad0d3efe2cd143":[7,0,0,10,2,6],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a80d6f82095c3b5fdbc46776e183cdb1f":[5,0,0,11,2,11],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a80d6f82095c3b5fdbc46776e183cdb1f":[7,0,0,10,2,11],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a87b6e54f3a0536d20709d7e746ec575d":[5,0,0,11,2,15],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#a87b6e54f3a0536d20709d7e746ec575d":[7,0,0,10,2,15],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#aab88715f3c94437ca7f3fcb1698c69de":[5,0,0,11,2,3],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#aab88715f3c94437ca7f3fcb1698c69de":[7,0,0,10,2,3],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#ab0a33f49be02d34b27f75edf75dbc06d":[5,0,0,11,2,16],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#ab0a33f49be02d34b27f75edf75dbc06d":[7,0,0,10,2,16],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#abf218d255bde157540b51cd6a54f6eb1":[5,0,0,11,2,7],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#abf218d255bde157540b51cd6a54f6eb1":[7,0,0,10,2,7],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae28e54330d575d9d1d3d8ebc6e7a6f75":[5,0,0,11,2,1],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae28e54330d575d9d1d3d8ebc6e7a6f75":[7,0,0,10,2,1],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae7776f4a526db3245e64a74a3b0172d3":[5,0,0,11,2,5],
+"classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae7776f4a526db3245e64a74a3b0172d3":[7,0,0,10,2,5],
+"classgridfire_1_1trigger_1_1_logical_trigger.html":[5,0,0,11,3],
+"classgridfire_1_1trigger_1_1_logical_trigger.html":[7,0,0,10,3],
+"classgridfire_1_1trigger_1_1_not_trigger.html":[5,0,0,11,4],
+"classgridfire_1_1trigger_1_1_not_trigger.html":[7,0,0,10,4],
+"classgridfire_1_1trigger_1_1_not_trigger.html#a0d7818e59a8d86e86053bcb6d5d7d2b8":[5,0,0,11,4,10],
+"classgridfire_1_1trigger_1_1_not_trigger.html#a0d7818e59a8d86e86053bcb6d5d7d2b8":[7,0,0,10,4,10],
+"classgridfire_1_1trigger_1_1_not_trigger.html#a2f9b0d6a6ac54f6371c5a208c06826ea":[5,0,0,11,4,5],
+"classgridfire_1_1trigger_1_1_not_trigger.html#a2f9b0d6a6ac54f6371c5a208c06826ea":[7,0,0,10,4,5],
+"classgridfire_1_1trigger_1_1_not_trigger.html#a4828599aae5ff37f4c82e51fe192bed3":[5,0,0,11,4,0],
+"classgridfire_1_1trigger_1_1_not_trigger.html#a4828599aae5ff37f4c82e51fe192bed3":[7,0,0,10,4,0],
+"classgridfire_1_1trigger_1_1_not_trigger.html#a846432abf33c7602af0fbb5475c0ad32":[5,0,0,11,4,8],
+"classgridfire_1_1trigger_1_1_not_trigger.html#a846432abf33c7602af0fbb5475c0ad32":[7,0,0,10,4,8],
+"classgridfire_1_1trigger_1_1_not_trigger.html#a86404f57e0e0683fc56e0e49321e5e3b":[5,0,0,11,4,11],
+"classgridfire_1_1trigger_1_1_not_trigger.html#a86404f57e0e0683fc56e0e49321e5e3b":[7,0,0,10,4,11],
+"classgridfire_1_1trigger_1_1_not_trigger.html#aa1253080cd57cdf0be6780773ce6c73c":[5,0,0,11,4,12],
+"classgridfire_1_1trigger_1_1_not_trigger.html#aa1253080cd57cdf0be6780773ce6c73c":[7,0,0,10,4,12],
+"classgridfire_1_1trigger_1_1_not_trigger.html#abfb3eb7befba646ce9f11f36a63750ae":[5,0,0,11,4,9],
+"classgridfire_1_1trigger_1_1_not_trigger.html#abfb3eb7befba646ce9f11f36a63750ae":[7,0,0,10,4,9],
+"classgridfire_1_1trigger_1_1_not_trigger.html#acc3bd2938f7746997fb1d255681d8b20":[5,0,0,11,4,4],
+"classgridfire_1_1trigger_1_1_not_trigger.html#acc3bd2938f7746997fb1d255681d8b20":[7,0,0,10,4,4],
+"classgridfire_1_1trigger_1_1_not_trigger.html#ad8166350329db3e1f50954afbb311a35":[5,0,0,11,4,3],
+"classgridfire_1_1trigger_1_1_not_trigger.html#ad8166350329db3e1f50954afbb311a35":[7,0,0,10,4,3],
+"classgridfire_1_1trigger_1_1_not_trigger.html#adb9c36fa46a30c28e68c59a7d3bd825d":[5,0,0,11,4,13],
+"classgridfire_1_1trigger_1_1_not_trigger.html#adb9c36fa46a30c28e68c59a7d3bd825d":[7,0,0,10,4,13],
+"classgridfire_1_1trigger_1_1_not_trigger.html#ae2d27d72af9e1fbf711a58e4583b43a3":[5,0,0,11,4,6],
+"classgridfire_1_1trigger_1_1_not_trigger.html#ae2d27d72af9e1fbf711a58e4583b43a3":[7,0,0,10,4,6],
+"classgridfire_1_1trigger_1_1_not_trigger.html#ae453a72df20fdd416443ef7867f86b92":[5,0,0,11,4,2],
+"classgridfire_1_1trigger_1_1_not_trigger.html#ae453a72df20fdd416443ef7867f86b92":[7,0,0,10,4,2],
+"classgridfire_1_1trigger_1_1_not_trigger.html#ae4830ed152643770b0888b040475b000":[5,0,0,11,4,14],
+"classgridfire_1_1trigger_1_1_not_trigger.html#ae4830ed152643770b0888b040475b000":[7,0,0,10,4,14],
+"classgridfire_1_1trigger_1_1_not_trigger.html#afa4173490171d1251cc1757b92841755":[5,0,0,11,4,1],
+"classgridfire_1_1trigger_1_1_not_trigger.html#afa4173490171d1251cc1757b92841755":[7,0,0,10,4,1],
+"classgridfire_1_1trigger_1_1_not_trigger.html#afe337517b77e5433d92ded3a64565141":[5,0,0,11,4,7],
+"classgridfire_1_1trigger_1_1_not_trigger.html#afe337517b77e5433d92ded3a64565141":[7,0,0,10,4,7],
+"classgridfire_1_1trigger_1_1_or_trigger.html":[5,0,0,11,5],
+"classgridfire_1_1trigger_1_1_or_trigger.html":[7,0,0,10,5],
+"classgridfire_1_1trigger_1_1_or_trigger.html#a062af4f567dc48c088f1fcfb64cc79ec":[5,0,0,11,5,4],
+"classgridfire_1_1trigger_1_1_or_trigger.html#a062af4f567dc48c088f1fcfb64cc79ec":[7,0,0,10,5,4],
+"classgridfire_1_1trigger_1_1_or_trigger.html#a0b3a7f45604dbb27e832d9559dd20997":[5,0,0,11,5,5],
+"classgridfire_1_1trigger_1_1_or_trigger.html#a0b3a7f45604dbb27e832d9559dd20997":[7,0,0,10,5,5],
+"classgridfire_1_1trigger_1_1_or_trigger.html#a30dec370b61a5f0562956394b89e8f89":[5,0,0,11,5,11],
+"classgridfire_1_1trigger_1_1_or_trigger.html#a30dec370b61a5f0562956394b89e8f89":[7,0,0,10,5,11],
+"classgridfire_1_1trigger_1_1_or_trigger.html#a35d519d5266c68b696b779b275574ebf":[5,0,0,11,5,12],
+"classgridfire_1_1trigger_1_1_or_trigger.html#a35d519d5266c68b696b779b275574ebf":[7,0,0,10,5,12]
 };
diff --git a/docs/html/navtreeindex6.js b/docs/html/navtreeindex6.js
index 0e5bc46a..4eccdd0c 100644
--- a/docs/html/navtreeindex6.js
+++ b/docs/html/navtreeindex6.js
@@ -1,253 +1,253 @@
 var NAVTREEINDEX6 =
 {
-"rauscher__thielemann__partition__data_8h.html#a5240736f3bdb43cf2cd63464c5835df1":[8,0,1,0,0,4,6,1],
-"rauscher__thielemann__partition__data_8h.html#a7b9a54e9c58848fe3205479acd770ffd":[8,0,1,0,0,4,6,0],
-"rauscher__thielemann__partition__data__record_8h.html":[8,0,1,0,0,4,7],
-"reaclib_8cpp.html":[8,0,1,1,3,0],
-"reaclib_8cpp.html#a2c6902cf3e699a1a65e871efa878a6ab":[8,0,1,1,3,0,5],
-"reaclib_8h.html":[8,0,1,0,0,5,0],
-"reaction_2bindings_8cpp.html":[8,0,1,2,5,0],
-"reaction_2bindings_8cpp.html#ae174b115814ec42920a799881cef1efa":[8,0,1,2,5,0,0],
-"reaction_2bindings_8h.html":[8,0,1,2,5,1],
-"reaction_2bindings_8h.html#a221d509fd54278898e2cbb73663f53d0":[8,0,1,2,5,1,0],
-"reaction_8cpp.html":[8,0,1,1,3,1],
-"reaction_8h.html":[8,0,1,0,0,5,1],
-"reactions__data_8h.html":[8,0,1,0,0,5,2],
-"reactions__data_8h.html#a32dea82d95667c3df395d58fb469ce2a":[8,0,1,0,0,5,2,1],
-"reactions__data_8h.html#aeb44e2b3b67960dfd83ecd7136c7d38b":[8,0,1,0,0,5,2,0],
-"reporting_8h.html":[8,0,1,0,0,0,1,2],
-"screening_2bindings_8cpp.html":[8,0,1,2,6,1],
-"screening_2bindings_8cpp.html#a4fcef69d9382bfbc315cb061038627f4":[8,0,1,2,6,1,0],
-"screening_2bindings_8h.html":[8,0,1,2,6,2],
-"screening_2bindings_8h.html#a9e1a938ffee0a1b9d913fa4968865b1b":[8,0,1,2,6,2,0],
-"screening_8h.html":[8,0,1,0,0,6,0],
-"screening__abstract_8h.html":[8,0,1,0,0,6,1],
-"screening__bare_8cpp.html":[8,0,1,1,4,0],
-"screening__bare_8h.html":[8,0,1,0,0,6,2],
-"screening__types_8cpp.html":[8,0,1,1,4,1],
-"screening__types_8h.html":[8,0,1,0,0,6,3],
-"screening__weak_8cpp.html":[8,0,1,1,4,2],
-"screening__weak_8h.html":[8,0,1,0,0,6,4],
-"solver_2bindings_8cpp.html":[8,0,1,2,7,1],
-"solver_2bindings_8cpp.html#a722d28831d82cd075081fcf4b403479d":[8,0,1,2,7,1,0],
-"solver_2bindings_8h.html":[8,0,1,2,7,2],
-"solver_2bindings_8h.html#a7ff40d9e08fcb5028e914045447d46d3":[8,0,1,2,7,2,0],
-"solver_8cpp.html":[8,0,1,1,5,0],
-"solver_8h.html":[8,0,1,0,0,7,0],
-"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html":[5,0,0,10,0],
-"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html":[7,0,0,9,0],
-"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a3bb21f20df8115d37108cf3c3be3bc6f":[5,0,0,10,0,1],
-"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a3bb21f20df8115d37108cf3c3be3bc6f":[7,0,0,9,0,1],
-"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a6c2e9087f6c8af5d89a5f0de7bd4a5b4":[5,0,0,10,0,0],
-"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a6c2e9087f6c8af5d89a5f0de7bd4a5b4":[7,0,0,9,0,0],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html":[5,0,0,16,2],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html":[7,0,0,15,2],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275":[5,0,0,16,2,2],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275":[7,0,0,15,2,2],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3ce63aa3ad88568f4eb0d3ca2414209f":[5,0,0,16,2,1],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3ce63aa3ad88568f4eb0d3ca2414209f":[7,0,0,15,2,1],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3e2e67e532970738d20491ea56b170f3":[5,0,0,16,2,0],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3e2e67e532970738d20491ea56b170f3":[7,0,0,15,2,0],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a510e380116e2e6d9158cf00fedac2666":[5,0,0,16,2,8],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a510e380116e2e6d9158cf00fedac2666":[7,0,0,15,2,8],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6bcfe2230dd54b088180d34389266b07":[5,0,0,16,2,4],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6bcfe2230dd54b088180d34389266b07":[7,0,0,15,2,4],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c":[5,0,0,16,2,5],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c":[7,0,0,15,2,5],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497":[5,0,0,16,2,3],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497":[7,0,0,15,2,3],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a9974f944a2cf5179baabebe09d60cf18":[5,0,0,16,2,7],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a9974f944a2cf5179baabebe09d60cf18":[7,0,0,15,2,7],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e":[5,0,0,16,2,6],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e":[7,0,0,15,2,6],
-"structgridfire_1_1_graph_engine_1_1constants.html":[5,0,0,16,1],
-"structgridfire_1_1_graph_engine_1_1constants.html":[7,0,0,15,1],
-"structgridfire_1_1_graph_engine_1_1constants.html#a29c8ae2b5c1d5fecd25c4fde2b623f7f":[5,0,0,16,1,1],
-"structgridfire_1_1_graph_engine_1_1constants.html#a29c8ae2b5c1d5fecd25c4fde2b623f7f":[7,0,0,15,1,1],
-"structgridfire_1_1_graph_engine_1_1constants.html#a3597bc632a5dd50aaa0044d8c18ca423":[5,0,0,16,1,3],
-"structgridfire_1_1_graph_engine_1_1constants.html#a3597bc632a5dd50aaa0044d8c18ca423":[7,0,0,15,1,3],
-"structgridfire_1_1_graph_engine_1_1constants.html#a5ccc874d6704615e0ce54c14dc67699d":[5,0,0,16,1,2],
-"structgridfire_1_1_graph_engine_1_1constants.html#a5ccc874d6704615e0ce54c14dc67699d":[7,0,0,15,1,2],
-"structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306":[5,0,0,16,1,0],
-"structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306":[7,0,0,15,1,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html":[5,0,0,17,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html":[7,0,0,16,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a0c3bd8d5918e344657227a09cd7e39a5":[5,0,0,17,0,5],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a0c3bd8d5918e344657227a09cd7e39a5":[7,0,0,16,0,5],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5df4f2c27e9eaa781c972a8c9b595787":[5,0,0,17,0,4],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5df4f2c27e9eaa781c972a8c9b595787":[7,0,0,16,0,4],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5eb642e161ffb5500ccc1e412849ee5e":[5,0,0,17,0,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5eb642e161ffb5500ccc1e412849ee5e":[7,0,0,16,0,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a73ca615753553f4a85160bd9f166da5b":[5,0,0,17,0,6],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a73ca615753553f4a85160bd9f166da5b":[7,0,0,16,0,6],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#aaf8b925a169a732c14f4451a33451f51":[5,0,0,17,0,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#aaf8b925a169a732c14f4451a33451f51":[7,0,0,16,0,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac18229250c4c160aada96e19325faa29":[5,0,0,17,0,7],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac18229250c4c160aada96e19325faa29":[7,0,0,16,0,7],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505":[5,0,0,17,0,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505":[7,0,0,16,0,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894":[5,0,0,17,0,0,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894":[7,0,0,16,0,0,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387":[5,0,0,17,0,0,5],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387":[7,0,0,16,0,0,5],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a":[5,0,0,17,0,0,3],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a":[7,0,0,16,0,0,3],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9e720102de6020a01552bc0e8935c566":[5,0,0,17,0,0,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9e720102de6020a01552bc0e8935c566":[7,0,0,16,0,0,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061":[5,0,0,17,0,0,4],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061":[7,0,0,16,0,0,4],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505aafefea58639f78d7c750970bbad28420":[5,0,0,17,0,0,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505aafefea58639f78d7c750970bbad28420":[7,0,0,16,0,0,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505ab1c94ca2fbc3e78fc30069c8d0f01680":[5,0,0,17,0,0,6],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505ab1c94ca2fbc3e78fc30069c8d0f01680":[7,0,0,16,0,0,6],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac55fb580dd4b9763cefe4612555b03f3":[5,0,0,17,0,3],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac55fb580dd4b9763cefe4612555b03f3":[7,0,0,16,0,3],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afb930f4472f4bb713f0b606194762c6f":[5,0,0,17,0,9],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afb930f4472f4bb713f0b606194762c6f":[7,0,0,16,0,9],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77":[5,0,0,17,0,8],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77":[7,0,0,16,0,8],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html":[5,0,0,17,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html":[7,0,0,16,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a0adf1074b5e6ba448cedff7563c450d0":[5,0,0,17,1,5],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a0adf1074b5e6ba448cedff7563c450d0":[7,0,0,16,1,5],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a1aa29df77925443796e1e59c1b7b7a60":[5,0,0,17,1,3],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a1aa29df77925443796e1e59c1b7b7a60":[7,0,0,16,1,3],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3bc901d2d8234d1f61e94d0fe0777f7d":[5,0,0,17,1,12],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3bc901d2d8234d1f61e94d0fe0777f7d":[7,0,0,16,1,12],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3ebf684b36e98da38d8ee6f0be4f91e2":[5,0,0,17,1,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3ebf684b36e98da38d8ee6f0be4f91e2":[7,0,0,16,1,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0":[5,0,0,17,1,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0":[7,0,0,16,1,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c":[5,0,0,17,1,9],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c":[7,0,0,16,1,9],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4eb11e99dc2a7e038d815bf7c6bd0be8":[5,0,0,17,1,8],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4eb11e99dc2a7e038d815bf7c6bd0be8":[7,0,0,16,1,8],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6d13bb5294f5dae7e2eb1d26720f944e":[5,0,0,17,1,7],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6d13bb5294f5dae7e2eb1d26720f944e":[7,0,0,16,1,7],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678":[5,0,0,17,1,10],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678":[7,0,0,16,1,10],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5":[5,0,0,17,1,13],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5":[7,0,0,16,1,13],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc":[5,0,0,17,1,4],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc":[7,0,0,16,1,4],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7353c20a6eac2ac0d9d13791577080d":[5,0,0,17,1,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7353c20a6eac2ac0d9d13791577080d":[7,0,0,16,1,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28":[5,0,0,17,1,6],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28":[7,0,0,16,1,6],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7":[5,0,0,17,1,11],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7":[7,0,0,16,1,11],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html":[5,0,0,17,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html":[7,0,0,16,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06":[5,0,0,17,2,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06":[7,0,0,16,2,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e":[5,0,0,17,2,8],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e":[7,0,0,16,2,8],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9":[5,0,0,17,2,6],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9":[7,0,0,16,2,6],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a":[5,0,0,17,2,3],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a":[7,0,0,16,2,3],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88":[5,0,0,17,2,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88":[7,0,0,16,2,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681":[5,0,0,17,2,7],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681":[7,0,0,16,2,7],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ab11be6e7afeef1ac9e4314ad8345e0b0":[5,0,0,17,2,4],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ab11be6e7afeef1ac9e4314ad8345e0b0":[7,0,0,16,2,4],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a":[5,0,0,17,2,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a":[7,0,0,16,2,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06":[5,0,0,17,2,5],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06":[7,0,0,16,2,5],
-"structgridfire_1_1_net_in.html":[5,0,0,18],
-"structgridfire_1_1_net_in.html":[7,0,0,17],
-"structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577":[5,0,0,18,3],
-"structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577":[7,0,0,17,3],
-"structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1":[5,0,0,18,7],
-"structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1":[7,0,0,17,7],
-"structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1":[5,0,0,18,1],
-"structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1":[7,0,0,17,1],
-"structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65":[5,0,0,18,0],
-"structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65":[7,0,0,17,0],
-"structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a":[5,0,0,18,4],
-"structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a":[7,0,0,17,4],
-"structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be":[5,0,0,18,6],
-"structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be":[7,0,0,17,6],
-"structgridfire_1_1_net_in.html#a6a5e909b46094ffa20da9a3da906e43f":[5,0,0,18,2],
-"structgridfire_1_1_net_in.html#a6a5e909b46094ffa20da9a3da906e43f":[7,0,0,17,2],
-"structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b":[5,0,0,18,5],
-"structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b":[7,0,0,17,5],
-"structgridfire_1_1_net_out.html":[5,0,0,19],
-"structgridfire_1_1_net_out.html":[7,0,0,18],
-"structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a":[5,0,0,19,1],
-"structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a":[7,0,0,18,1],
-"structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6":[5,0,0,19,2],
-"structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6":[7,0,0,18,2],
-"structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6":[5,0,0,19,3],
-"structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6":[7,0,0,18,3],
-"structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b":[5,0,0,19,0],
-"structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b":[7,0,0,18,0],
-"structgridfire_1_1_priming_report.html":[5,0,0,22],
-"structgridfire_1_1_priming_report.html":[7,0,0,21],
-"structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb":[5,0,0,22,2],
-"structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb":[7,0,0,21,2],
-"structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7":[5,0,0,22,1],
-"structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7":[7,0,0,21,1],
-"structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d":[5,0,0,22,3],
-"structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d":[7,0,0,21,3],
-"structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736":[5,0,0,22,0],
-"structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736":[7,0,0,21,0],
-"structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3":[5,0,0,22,4],
-"structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3":[7,0,0,21,4],
-"structgridfire_1_1_q_s_e_cache_config.html":[5,0,0,23],
-"structgridfire_1_1_q_s_e_cache_config.html":[7,0,0,22],
-"structgridfire_1_1_q_s_e_cache_config.html#a31d3e8d1b83109524c94641ce06fa351":[5,0,0,23,2],
-"structgridfire_1_1_q_s_e_cache_config.html#a31d3e8d1b83109524c94641ce06fa351":[7,0,0,22,2],
-"structgridfire_1_1_q_s_e_cache_config.html#a57b7ca68463aa9b78007e5cf35ebf7ce":[5,0,0,23,0],
-"structgridfire_1_1_q_s_e_cache_config.html#a57b7ca68463aa9b78007e5cf35ebf7ce":[7,0,0,22,0],
-"structgridfire_1_1_q_s_e_cache_config.html#af4dca2b24aa364fbbf6e99eb26774f40":[5,0,0,23,1],
-"structgridfire_1_1_q_s_e_cache_config.html#af4dca2b24aa364fbbf6e99eb26774f40":[7,0,0,22,1],
-"structgridfire_1_1_q_s_e_cache_key.html":[5,0,0,24],
-"structgridfire_1_1_q_s_e_cache_key.html":[7,0,0,23],
-"structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7":[5,0,0,24,7],
-"structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7":[7,0,0,23,7],
-"structgridfire_1_1_q_s_e_cache_key.html#a3078528fc69b8e687448d3108a216c03":[5,0,0,24,0],
-"structgridfire_1_1_q_s_e_cache_key.html#a3078528fc69b8e687448d3108a216c03":[7,0,0,23,0],
-"structgridfire_1_1_q_s_e_cache_key.html#a711acccecadd93495fd08c81838be2d8":[5,0,0,24,4],
-"structgridfire_1_1_q_s_e_cache_key.html#a711acccecadd93495fd08c81838be2d8":[7,0,0,23,4],
-"structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d":[5,0,0,24,2],
-"structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d":[7,0,0,23,2],
-"structgridfire_1_1_q_s_e_cache_key.html#ab860b40d4ccb3c16a962d96bc767ff05":[5,0,0,24,5],
-"structgridfire_1_1_q_s_e_cache_key.html#ab860b40d4ccb3c16a962d96bc767ff05":[7,0,0,23,5],
-"structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63":[5,0,0,24,6],
-"structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63":[7,0,0,23,6],
-"structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3":[5,0,0,24,1],
-"structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3":[7,0,0,23,1],
-"structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81":[5,0,0,24,3],
-"structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81":[7,0,0,23,3],
-"structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a":[5,0,0,24,8],
-"structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a":[7,0,0,23,8],
-"structgridfire_1_1_step_derivatives.html":[5,0,0,26],
-"structgridfire_1_1_step_derivatives.html":[7,0,0,25],
-"structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008":[5,0,0,26,1],
-"structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008":[7,0,0,25,1],
-"structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d":[5,0,0,26,0],
-"structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d":[7,0,0,25,0],
-"structgridfire_1_1approx8_1_1_approx8_net.html":[5,0,0,0,0],
-"structgridfire_1_1approx8_1_1_approx8_net.html":[7,0,0,0,0],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a010df59d40b3bc8a802224968922ebde":[5,0,0,0,0,11],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a010df59d40b3bc8a802224968922ebde":[7,0,0,0,0,11],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a18501627dceb5d084bc7ba19f119826f":[5,0,0,0,0,3],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a18501627dceb5d084bc7ba19f119826f":[7,0,0,0,0,3],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a1af9135867aa3786721b89dbfdc4aee0":[5,0,0,0,0,8],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a1af9135867aa3786721b89dbfdc4aee0":[7,0,0,0,0,8],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a296e54c1b22f0c5d4d07a13577c6e069":[5,0,0,0,0,0],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a296e54c1b22f0c5d4d07a13577c6e069":[7,0,0,0,0,0],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a31928b4041479da6515a90569322fc02":[5,0,0,0,0,13],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a31928b4041479da6515a90569322fc02":[7,0,0,0,0,13],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a562c2383f585d3e9984225584d61c037":[5,0,0,0,0,2],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a562c2383f585d3e9984225584d61c037":[7,0,0,0,0,2],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a7218aa9b3dbe7c6eca52119e115692db":[5,0,0,0,0,14],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a7218aa9b3dbe7c6eca52119e115692db":[7,0,0,0,0,14],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a82977ad3df7f620e80a6235b3fe64731":[5,0,0,0,0,6],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a82977ad3df7f620e80a6235b3fe64731":[7,0,0,0,0,6],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a928b7810cb2993d59d40aa73c2faef18":[5,0,0,0,0,12],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a928b7810cb2993d59d40aa73c2faef18":[7,0,0,0,0,12]
+"classgridfire_1_1trigger_1_1_or_trigger.html#a6da04b5b15371f7087be03bb337dbdd6":[5,0,0,11,5,10],
+"classgridfire_1_1trigger_1_1_or_trigger.html#a6da04b5b15371f7087be03bb337dbdd6":[7,0,0,10,5,10],
+"classgridfire_1_1trigger_1_1_or_trigger.html#a775dac97d109c5fcd5c0287ca98f308c":[5,0,0,11,5,8],
+"classgridfire_1_1trigger_1_1_or_trigger.html#a775dac97d109c5fcd5c0287ca98f308c":[7,0,0,10,5,8],
+"classgridfire_1_1trigger_1_1_or_trigger.html#a7bca0da16353f4b04a2f40fb29c07922":[5,0,0,11,5,9],
+"classgridfire_1_1trigger_1_1_or_trigger.html#a7bca0da16353f4b04a2f40fb29c07922":[7,0,0,10,5,9],
+"classgridfire_1_1trigger_1_1_or_trigger.html#aaf4f8a090bdd10eeba0b7849fa8ed888":[5,0,0,11,5,0],
+"classgridfire_1_1trigger_1_1_or_trigger.html#aaf4f8a090bdd10eeba0b7849fa8ed888":[7,0,0,10,5,0],
+"classgridfire_1_1trigger_1_1_or_trigger.html#ab42043e55c81bac5d3f981bc139579de":[5,0,0,11,5,7],
+"classgridfire_1_1trigger_1_1_or_trigger.html#ab42043e55c81bac5d3f981bc139579de":[7,0,0,10,5,7],
+"classgridfire_1_1trigger_1_1_or_trigger.html#ac8be54d91e77ed16ae3cca2417d82e0a":[5,0,0,11,5,2],
+"classgridfire_1_1trigger_1_1_or_trigger.html#ac8be54d91e77ed16ae3cca2417d82e0a":[7,0,0,10,5,2],
+"classgridfire_1_1trigger_1_1_or_trigger.html#accb56630df2f57400467d315c61dede6":[5,0,0,11,5,3],
+"classgridfire_1_1trigger_1_1_or_trigger.html#accb56630df2f57400467d315c61dede6":[7,0,0,10,5,3],
+"classgridfire_1_1trigger_1_1_or_trigger.html#adc6f560d9199455ba98d85eadfe02847":[5,0,0,11,5,14],
+"classgridfire_1_1trigger_1_1_or_trigger.html#adc6f560d9199455ba98d85eadfe02847":[7,0,0,10,5,14],
+"classgridfire_1_1trigger_1_1_or_trigger.html#ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b":[5,0,0,11,5,13],
+"classgridfire_1_1trigger_1_1_or_trigger.html#ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b":[7,0,0,10,5,13],
+"classgridfire_1_1trigger_1_1_or_trigger.html#af595a5daab0f5b3ffc450c6de6737517":[5,0,0,11,5,15],
+"classgridfire_1_1trigger_1_1_or_trigger.html#af595a5daab0f5b3ffc450c6de6737517":[7,0,0,10,5,15],
+"classgridfire_1_1trigger_1_1_or_trigger.html#afc7d3eae8306ee383d76997ac3803327":[5,0,0,11,5,6],
+"classgridfire_1_1trigger_1_1_or_trigger.html#afc7d3eae8306ee383d76997ac3803327":[7,0,0,10,5,6],
+"classgridfire_1_1trigger_1_1_or_trigger.html#afe30f95de39c1375557d032b8a8111f9":[5,0,0,11,5,1],
+"classgridfire_1_1trigger_1_1_or_trigger.html#afe30f95de39c1375557d032b8a8111f9":[7,0,0,10,5,1],
+"classgridfire_1_1trigger_1_1_trigger.html":[5,0,0,11,6],
+"classgridfire_1_1trigger_1_1_trigger.html":[7,0,0,10,6],
+"classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc":[5,0,0,11,6,7],
+"classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc":[7,0,0,10,6,7],
+"classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88":[5,0,0,11,6,1],
+"classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88":[7,0,0,10,6,1],
+"classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda":[5,0,0,11,6,0],
+"classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda":[7,0,0,10,6,0],
+"classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7":[5,0,0,11,6,3],
+"classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7":[7,0,0,10,6,3],
+"classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f":[5,0,0,11,6,2],
+"classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f":[7,0,0,10,6,2],
+"classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d":[5,0,0,11,6,5],
+"classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d":[7,0,0,10,6,5],
+"classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7":[5,0,0,11,6,4],
+"classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7":[7,0,0,10,6,4],
+"classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea":[5,0,0,11,6,8],
+"classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea":[7,0,0,10,6,8],
+"classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d":[5,0,0,11,6,6],
+"classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d":[7,0,0,10,6,6],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html":[5,0,0,11,0,0,0],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html":[7,0,0,10,0,0,0],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0d3b7c1d1057f442417c2f8c2a7177c5":[5,0,0,11,0,0,0,9],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0d3b7c1d1057f442417c2f8c2a7177c5":[7,0,0,10,0,0,0,9],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0e1ad148f9f3232992a4b16e440c249a":[5,0,0,11,0,0,0,4],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0e1ad148f9f3232992a4b16e440c249a":[7,0,0,10,0,0,0,4],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a14b1884a9014df33a1ec90dd3433c0b9":[5,0,0,11,0,0,0,11],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a14b1884a9014df33a1ec90dd3433c0b9":[7,0,0,10,0,0,0,11],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a179cb09a91d5c638d7a347137b208767":[5,0,0,11,0,0,0,7],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a179cb09a91d5c638d7a347137b208767":[7,0,0,10,0,0,0,7],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a32980aaf6d9c7632c024b4b74b1d9e70":[5,0,0,11,0,0,0,5],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a32980aaf6d9c7632c024b4b74b1d9e70":[7,0,0,10,0,0,0,5],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3855b15459217383647ecdf12bc35775":[5,0,0,11,0,0,0,1],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3855b15459217383647ecdf12bc35775":[7,0,0,10,0,0,0,1],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3af973e466ba62ebf1e41c608355e327":[5,0,0,11,0,0,0,8],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3af973e466ba62ebf1e41c608355e327":[7,0,0,10,0,0,0,8],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a4885bdcc719a0f8c8394905893739b96":[5,0,0,11,0,0,0,14],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a4885bdcc719a0f8c8394905893739b96":[7,0,0,10,0,0,0,14],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a594893c029f044be3119118808470f7a":[5,0,0,11,0,0,0,3],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a594893c029f044be3119118808470f7a":[7,0,0,10,0,0,0,3],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a6dc334b85ffb822880c6740dc457ea52":[5,0,0,11,0,0,0,0],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a6dc334b85ffb822880c6740dc457ea52":[7,0,0,10,0,0,0,0],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a9b782cbf033ed2023da6b2d55dcefc4e":[5,0,0,11,0,0,0,6],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a9b782cbf033ed2023da6b2d55dcefc4e":[7,0,0,10,0,0,0,6],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#acd55d04da377c8bf4af3ea2fcf2f1918":[5,0,0,11,0,0,0,12],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#acd55d04da377c8bf4af3ea2fcf2f1918":[7,0,0,10,0,0,0,12],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#ad0dd92f9da6c291c3bd57c0983940035":[5,0,0,11,0,0,0,2],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#ad0dd92f9da6c291c3bd57c0983940035":[7,0,0,10,0,0,0,2],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#aeac341c1e854d561a29aa39ad306d5d7":[5,0,0,11,0,0,0,13],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#aeac341c1e854d561a29aa39ad306d5d7":[7,0,0,10,0,0,0,13],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#afbd9258d65370bbc965e799c82f0e1c0":[5,0,0,11,0,0,0,10],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#afbd9258d65370bbc965e799c82f0e1c0":[7,0,0,10,0,0,0,10],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html":[5,0,0,11,0,0,1],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html":[7,0,0,10,0,0,1],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a00ede9fff51a8318913fd2ed504c1007":[5,0,0,11,0,0,1,14],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a00ede9fff51a8318913fd2ed504c1007":[7,0,0,10,0,0,1,14],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a0f412b8f788ab7990e353d62ab7d9a16":[5,0,0,11,0,0,1,2],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a0f412b8f788ab7990e353d62ab7d9a16":[7,0,0,10,0,0,1,2],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a16e9b87a8abb05bb6b5410903eb49e91":[5,0,0,11,0,0,1,13],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a16e9b87a8abb05bb6b5410903eb49e91":[7,0,0,10,0,0,1,13],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a235f84a37370a1ca2226fb881b4051c7":[5,0,0,11,0,0,1,0],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a235f84a37370a1ca2226fb881b4051c7":[7,0,0,10,0,0,1,0],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a273eb8a3e80d1235d2b3f252e55c5b50":[5,0,0,11,0,0,1,4],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a273eb8a3e80d1235d2b3f252e55c5b50":[7,0,0,10,0,0,1,4],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a2b1b4a9ef137e76d39e7a7dcb6cf725d":[5,0,0,11,0,0,1,9],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a2b1b4a9ef137e76d39e7a7dcb6cf725d":[7,0,0,10,0,0,1,9],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a3004a10bb89ecd7b2ba6103c9f5d4b96":[5,0,0,11,0,0,1,15],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a3004a10bb89ecd7b2ba6103c9f5d4b96":[7,0,0,10,0,0,1,15],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a34d285584ea96f71b99eefad8c738296":[5,0,0,11,0,0,1,5],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a34d285584ea96f71b99eefad8c738296":[7,0,0,10,0,0,1,5],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a468bf58f66417493501c59d7a8aabc98":[5,0,0,11,0,0,1,7],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a468bf58f66417493501c59d7a8aabc98":[7,0,0,10,0,0,1,7],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a50df7fefee167390522aa258fa6ee960":[5,0,0,11,0,0,1,1],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a50df7fefee167390522aa258fa6ee960":[7,0,0,10,0,0,1,1],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a51ac3899010c2790fc98801ffba9407e":[5,0,0,11,0,0,1,11],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a51ac3899010c2790fc98801ffba9407e":[7,0,0,10,0,0,1,11],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a87fc9fe6bd8762f148c858452ec30043":[5,0,0,11,0,0,1,3],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a87fc9fe6bd8762f148c858452ec30043":[7,0,0,10,0,0,1,3],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a9dfab0b765d3a4c362cecd860d59f58a":[5,0,0,11,0,0,1,8],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a9dfab0b765d3a4c362cecd860d59f58a":[7,0,0,10,0,0,1,8],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab6215873390f6bedab5c9f83b990b5e0":[5,0,0,11,0,0,1,10],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab6215873390f6bedab5c9f83b990b5e0":[7,0,0,10,0,0,1,10],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab80799eb7c80b3b20c1a7e7f9e1f5030":[5,0,0,11,0,0,1,16],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab80799eb7c80b3b20c1a7e7f9e1f5030":[7,0,0,10,0,0,1,16],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab93cb25bbebb159a8608a737bd972abd":[5,0,0,11,0,0,1,12],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab93cb25bbebb159a8608a737bd972abd":[7,0,0,10,0,0,1,12],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#af4034fa431e6c88fd05c50cce31b2fa0":[5,0,0,11,0,0,1,6],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#af4034fa431e6c88fd05c50cce31b2fa0":[7,0,0,10,0,0,1,6],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html":[5,0,0,11,0,0,2],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html":[7,0,0,10,0,0,2],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a021c760717efef3fc3b415dee6d4840b":[5,0,0,11,0,0,2,12],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a021c760717efef3fc3b415dee6d4840b":[7,0,0,10,0,0,2,12],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a04598611b0807cad395bdd2fbc41a6c2":[5,0,0,11,0,0,2,2],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a04598611b0807cad395bdd2fbc41a6c2":[7,0,0,10,0,0,2,2],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a0fe6af73b11b820561bd4e5552890d4e":[5,0,0,11,0,0,2,7],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a0fe6af73b11b820561bd4e5552890d4e":[7,0,0,10,0,0,2,7],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a171e6dee7f7d8275b3e8875eaeb0850d":[5,0,0,11,0,0,2,0],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a171e6dee7f7d8275b3e8875eaeb0850d":[7,0,0,10,0,0,2,0],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a22d8bc7aacbc388108225c26158e918c":[5,0,0,11,0,0,2,9],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a22d8bc7aacbc388108225c26158e918c":[7,0,0,10,0,0,2,9],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a25f6ac369c590a8370270bdc70545171":[5,0,0,11,0,0,2,17],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a25f6ac369c590a8370270bdc70545171":[7,0,0,10,0,0,2,17],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a290e5643eea08726d2fd44a1cd5617d0":[5,0,0,11,0,0,2,4],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a290e5643eea08726d2fd44a1cd5617d0":[7,0,0,10,0,0,2,4],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a8ba5a942bb61347851030d1eb6bbaa74":[5,0,0,11,0,0,2,3],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a8ba5a942bb61347851030d1eb6bbaa74":[7,0,0,10,0,0,2,3],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a94bb1de08a5ff55e1874f595f8c8965c":[5,0,0,11,0,0,2,5],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a94bb1de08a5ff55e1874f595f8c8965c":[7,0,0,10,0,0,2,5],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa03c13813065f720cf698c240f07d559":[5,0,0,11,0,0,2,18],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa03c13813065f720cf698c240f07d559":[7,0,0,10,0,0,2,18],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa4162916f562b4d7ea0205d6f3e6f917":[5,0,0,11,0,0,2,13],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa4162916f562b4d7ea0205d6f3e6f917":[7,0,0,10,0,0,2,13],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ab7d86e5c89a848cf238141393fe3a8de":[5,0,0,11,0,0,2,15],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ab7d86e5c89a848cf238141393fe3a8de":[7,0,0,10,0,0,2,15],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#abe902b2a42a6451f64497e075b0e0b25":[5,0,0,11,0,0,2,11],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#abe902b2a42a6451f64497e075b0e0b25":[7,0,0,10,0,0,2,11],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad2a7c2567b100f97a024f65818ecefed":[5,0,0,11,0,0,2,6],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad2a7c2567b100f97a024f65818ecefed":[7,0,0,10,0,0,2,6],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad4cc7113574f71905bc93cc40024b4bd":[5,0,0,11,0,0,2,14],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad4cc7113574f71905bc93cc40024b4bd":[7,0,0,10,0,0,2,14],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ae18e08a0bd72b68605d64e4d84355f79":[5,0,0,11,0,0,2,16],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ae18e08a0bd72b68605d64e4d84355f79":[7,0,0,10,0,0,2,16],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ae47a4f822f92774f6dc780ae74f12066":[5,0,0,11,0,0,2,1],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ae47a4f822f92774f6dc780ae74f12066":[7,0,0,10,0,0,2,1],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#af6bff6a484e8729445c26620b489665d":[5,0,0,11,0,0,2,8],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#af6bff6a484e8729445c26620b489665d":[7,0,0,10,0,0,2,8],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aff23db33140aa6a5a2ad36eda77b833d":[5,0,0,11,0,0,2,10],
+"classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aff23db33140aa6a5a2ad36eda77b833d":[7,0,0,10,0,0,2,10],
+"classgridfire_1_1utils_1_1_column.html":[5,0,0,12,0],
+"classgridfire_1_1utils_1_1_column.html":[7,0,0,11,0],
+"classgridfire_1_1utils_1_1_column.html#a5bd0ad730a684e1a8b583c5c27cca6e8":[5,0,0,12,0,1],
+"classgridfire_1_1utils_1_1_column.html#a5bd0ad730a684e1a8b583c5c27cca6e8":[7,0,0,11,0,1],
+"classgridfire_1_1utils_1_1_column.html#a7d7e4f4cf6f8e03725afeb9f664321b8":[5,0,0,12,0,0],
+"classgridfire_1_1utils_1_1_column.html#a7d7e4f4cf6f8e03725afeb9f664321b8":[7,0,0,11,0,0],
+"classgridfire_1_1utils_1_1_column.html#a7ff9084a0486fb8b08edfe866480568b":[5,0,0,12,0,3],
+"classgridfire_1_1utils_1_1_column.html#a7ff9084a0486fb8b08edfe866480568b":[7,0,0,11,0,3],
+"classgridfire_1_1utils_1_1_column.html#aaa99c4d00c3b79e37f2e73e7c6854758":[5,0,0,12,0,4],
+"classgridfire_1_1utils_1_1_column.html#aaa99c4d00c3b79e37f2e73e7c6854758":[7,0,0,11,0,4],
+"classgridfire_1_1utils_1_1_column.html#aaddf58469be3e3fd3bee0f4f660fe9e0":[5,0,0,12,0,5],
+"classgridfire_1_1utils_1_1_column.html#aaddf58469be3e3fd3bee0f4f660fe9e0":[7,0,0,11,0,5],
+"classgridfire_1_1utils_1_1_column.html#ad6a4f9aee1321e90896e5f4583d7311f":[5,0,0,12,0,2],
+"classgridfire_1_1utils_1_1_column.html#ad6a4f9aee1321e90896e5f4583d7311f":[7,0,0,11,0,2],
+"classgridfire_1_1utils_1_1_column_base.html":[5,0,0,12,1],
+"classgridfire_1_1utils_1_1_column_base.html":[7,0,0,11,1],
+"classgridfire_1_1utils_1_1_column_base.html#a4dd5f1409d3190eab9ba07eb6e611248":[5,0,0,12,1,2],
+"classgridfire_1_1utils_1_1_column_base.html#a4dd5f1409d3190eab9ba07eb6e611248":[7,0,0,11,1,2],
+"classgridfire_1_1utils_1_1_column_base.html#a5e07c8e33c96ee8095ebefbf9b75cb36":[5,0,0,12,1,1],
+"classgridfire_1_1utils_1_1_column_base.html#a5e07c8e33c96ee8095ebefbf9b75cb36":[7,0,0,11,1,1],
+"classgridfire_1_1utils_1_1_column_base.html#a704c1fc03271c14fc9f3da43612a1589":[5,0,0,12,1,0],
+"classgridfire_1_1utils_1_1_column_base.html#a704c1fc03271c14fc9f3da43612a1589":[7,0,0,11,1,0],
+"classgridfire_1_1utils_1_1_column_base.html#ab6e4cb14c8a0ad7b6b9ad0fbde766cba":[5,0,0,12,1,3],
+"classgridfire_1_1utils_1_1_column_base.html#ab6e4cb14c8a0ad7b6b9ad0fbde766cba":[7,0,0,11,1,3],
+"conceptgridfire_1_1_engine_type.html":[5,0,0,33],
+"conceptgridfire_1_1_engine_type.html":[6,0,1],
+"conceptgridfire_1_1_is_arithmetic_or_a_d.html":[5,0,0,32],
+"conceptgridfire_1_1_is_arithmetic_or_a_d.html":[6,0,0],
+"concepts.html":[6],
+"construction_8cpp.html":[8,0,1,1,0,1,0],
+"construction_8h.html":[8,0,1,0,0,0,1,0],
+"dir_048d8e0a5613c02d1dd32a8c2b4fae8e.html":[8,0,1,2,3],
+"dir_1ae9febcce3c81c54e014e2202672ae2.html":[8,0,1,2,2],
+"dir_1c671bae89ad45c4f6571bd7c3fca7f2.html":[8,0,1,0,0,4],
+"dir_1d1d50ce0d70b163d7d102a960190628.html":[8,0,1,0,0,5],
+"dir_230a420a279f78b45ea47b2d650bf1a7.html":[8,0,1,0,0,8,0],
+"dir_3626e0c0e3c5d7812d6b277dfa4ec364.html":[8,0,1,0,0],
+"dir_3c6e26120bd25666a475751afc8a34bc.html":[8,0,1,0,0,8,0,0],
+"dir_3cc0b3e3c66436f74054a789a4a47fbc.html":[8,0,1,1,0],
+"dir_43d540904cac5d711ae55af9d63e6471.html":[8,0,1,1,0,1],
+"dir_49e56c817e5e54854c35e136979f97ca.html":[8,0,0],
+"dir_4eba3bf96e8b886928c6be1f4154164d.html":[8,0,1,2,6],
+"dir_4fd0dc9a50f7a53e22cb356c650f915e.html":[8,0,1,1,5],
+"dir_5c0d64f70903e893b1efe571a4b8de29.html":[8,0,1,2],
+"dir_64012712bac8d4927da7703e58c6c3c3.html":[8,0,1,2,7],
+"dir_65bc51589f8002bfcb72faf47ab41180.html":[8,0,1,1,1],
+"dir_67aa14af464fbd247881f6980be7deb5.html":[8,0,1,0,0,6,0],
+"dir_68267d1309a1af8e8297ef4c3efbcdba.html":[8,0,1],
+"dir_6ccae78e9032a1b4db4873aea5f3b43d.html":[8,0,1,0,0,9],
+"dir_6f67cad5a3dd5daef2b4bab22419acbf.html":[8,0,1,2,9],
+"dir_736d89e8e2b688d729ae4656e8c69720.html":[8,0,1,2,0,0],
+"dir_7eae81c2ec58ffa76af06bb25bb86137.html":[8,0,1,2,4],
+"dir_80d0745b866022f2047f807b3376dff7.html":[8,0,1,0,0,0,2],
+"dir_87d18a4dc5174905bfd7d2dc734defe6.html":[8,0,1,1,6],
+"dir_897cfbcdbf2b76d535de4ec754728fa0.html":[8,0,1,1,5,0,0],
+"dir_8e34b6fea5a3d13256b367f27bc2135d.html":[8,0,1,0,0,10],
+"dir_902e06e9d82d80b06df7be6e417fa9ee.html":[8,0,1,1,3],
+"dir_97105ebeaecd797c90bf23079fd9b0e6.html":[8,0,1,2,4,0],
+"dir_9f35e0f3e3878d201f80e9b6c966a769.html":[8,0,1,0,0,2],
+"dir_a2537f6f0ba382cc4200a69fb7d9b7da.html":[8,0,1,1,2,0],
+"dir_ab918a70d5de27403bd1202d71acc71b.html":[8,0,1,0,0,3,0],
+"dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html":[8,0,1,0,0,7],
+"dir_aff155d61c3b73b9ab7dcdc908c4d49e.html":[8,0,1,0,0,0],
+"dir_b0553efdd4ad7f265c0580564941af0c.html":[8,0,1,1,5,0],
+"dir_b0856f6b0d80ccb263b2f415c91f9e17.html":[8,0,1,0],
+"dir_b854c27c088682f074a57cfa949846df.html":[8,0,1,2,5],
+"dir_b893969db6254951682857c720518fa8.html":[8,0,1,0,0,0,0],
+"dir_bf5ef66fceb9aacde9848923f7632729.html":[8,0,1,2,1],
+"dir_bfff093b02c380358955f421b7f67de5.html":[8,0,1,2,7,0],
+"dir_c34d5e8363cf0aa3fabc4f3fad3412a4.html":[8,0,0,0],
+"dir_c73541f51459c9e567d01a066f229f1c.html":[8,0,1,1,4],
+"dir_c85d3e3c5052e9ad9ce18c6863244a25.html":[8,0,1,1],
+"dir_c99e86cd0291aa23d2204e664fe571c1.html":[8,0,1,1,0,0],
+"dir_cd87a60aa1dbf4ee960e0533fd7a9743.html":[8,0,1,0,0,1],
+"dir_d0a49494bbb6e91de214e6669adf5efa.html":[8,0,1,2,0],
+"dir_d2ba15782ddae84c3d0c5f0e63bda236.html":[8,0,1,0,0,9,0],
+"dir_d5492b42d970deba31f48df1b35a6c47.html":[8,0,1,0,0,0,3],
+"dir_d70391a28a381da2f0629437a1b6db28.html":[8,0,1,2,8],
+"dir_da65b9a371696ae0281f77edf1c03876.html":[8,0,1,1,3,0],
+"dir_dd8201c056cb17022d2864e6e5aa368d.html":[8,0,1,2,3,0],
+"dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html":[8,0,1,0,0,8],
+"dir_e87948a39c0c6c3f66d9f5f967ab86bd.html":[8,0,1,1,0,2],
+"dir_f2d7b0c77cb2532170ac94ead6e4ba70.html":[8,0,1,0,0,6],
+"dir_f4383b1846ef599868e873d917f1344c.html":[8,0,1,0,0,3],
+"dir_f575fd282ecf3769a887e0c3d3cafd55.html":[8,0,1,0,0,5,0],
+"dir_fe5109f07276e0a4a472af6b22fd99c7.html":[8,0,1,1,2],
+"dir_fe7d6b610561b6ccbae8c0cd892464cf.html":[8,0,1,2,6,0],
+"dir_fedd162cb41c94f7e299c266e75251fd.html":[8,0,1,0,0,0,1],
+"dynamic__engine__diagnostics_8cpp.html":[8,0,1,1,0,0,0],
+"dynamic__engine__diagnostics_8h.html":[8,0,1,0,0,0,0,0],
+"engine_2bindings_8cpp.html":[8,0,1,2,0,1],
+"engine_2bindings_8cpp.html#a73d427751e6a64952d52e7c2cc84d065":[8,0,1,2,0,1,3],
+"engine_2bindings_8cpp.html#a766b8bf2c08f2e81486752261ec89642":[8,0,1,2,0,1,4],
+"engine_2bindings_8cpp.html#a7ba5eb780fc02dab2b7be388ffa084f8":[8,0,1,2,0,1,1],
+"engine_2bindings_8cpp.html#ac12de48f4164b679dd7afb03c83ec4bf":[8,0,1,2,0,1,6],
+"engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c":[8,0,1,2,0,1,5],
+"engine_2bindings_8cpp.html#aef9864cec8e0891ee46c8a0d76de2c93":[8,0,1,2,0,1,2],
+"engine_2bindings_8h.html":[8,0,1,2,0,2]
 };
diff --git a/docs/html/navtreeindex7.js b/docs/html/navtreeindex7.js
index ce4b23ff..a3a80b6e 100644
--- a/docs/html/navtreeindex7.js
+++ b/docs/html/navtreeindex7.js
@@ -1,241 +1,253 @@
 var NAVTREEINDEX7 =
 {
-"structgridfire_1_1approx8_1_1_approx8_net.html#a95b9a07e29285884e6de523f8132f653":[5,0,0,0,0,1],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a95b9a07e29285884e6de523f8132f653":[7,0,0,0,0,1],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a9647205f52fb0fa21316be39c3a6d709":[5,0,0,0,0,7],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a9647205f52fb0fa21316be39c3a6d709":[7,0,0,0,0,7],
-"structgridfire_1_1approx8_1_1_approx8_net.html#ab0a43fee658efcaacfe7e6fb4870569b":[5,0,0,0,0,5],
-"structgridfire_1_1approx8_1_1_approx8_net.html#ab0a43fee658efcaacfe7e6fb4870569b":[7,0,0,0,0,5],
-"structgridfire_1_1approx8_1_1_approx8_net.html#ab4e95622dc0414ad7e636ef811e600af":[5,0,0,0,0,10],
-"structgridfire_1_1approx8_1_1_approx8_net.html#ab4e95622dc0414ad7e636ef811e600af":[7,0,0,0,0,10],
-"structgridfire_1_1approx8_1_1_approx8_net.html#acc735a17e005f7e25c68a86d9735ec4c":[5,0,0,0,0,4],
-"structgridfire_1_1approx8_1_1_approx8_net.html#acc735a17e005f7e25c68a86d9735ec4c":[7,0,0,0,0,4],
-"structgridfire_1_1approx8_1_1_approx8_net.html#ad43418fd8c536ebc814d5e6de555256c":[5,0,0,0,0,9],
-"structgridfire_1_1approx8_1_1_approx8_net.html#ad43418fd8c536ebc814d5e6de555256c":[7,0,0,0,0,9],
-"structgridfire_1_1approx8_1_1_jacobian.html":[5,0,0,0,2],
-"structgridfire_1_1approx8_1_1_jacobian.html":[7,0,0,0,2],
-"structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa":[5,0,0,0,2,0],
-"structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa":[7,0,0,0,2,0],
-"structgridfire_1_1approx8_1_1_o_d_e.html":[5,0,0,0,3],
-"structgridfire_1_1approx8_1_1_o_d_e.html":[7,0,0,0,3],
-"structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0":[5,0,0,0,3,0],
-"structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0":[7,0,0,0,3,0],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html":[5,0,0,1,4,0],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html":[7,0,0,1,4,0],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a24207163a7ea2dde675b458f9df37a99":[5,0,0,1,4,0,0],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a24207163a7ea2dde675b458f9df37a99":[7,0,0,1,4,0,0],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a352cd33629e63286808df617d36cb70b":[5,0,0,1,4,0,2],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a352cd33629e63286808df617d36cb70b":[7,0,0,1,4,0,2],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963":[5,0,0,1,4,0,3],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963":[7,0,0,1,4,0,3],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf":[5,0,0,1,4,0,5],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf":[7,0,0,1,4,0,5],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44":[5,0,0,1,4,0,1],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44":[7,0,0,1,4,0,1],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#ac1cddf0f2955d4282afcf4a90a2de9c0":[5,0,0,1,4,0,4],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#ac1cddf0f2955d4282afcf4a90a2de9c0":[7,0,0,1,4,0,4],
-"structgridfire_1_1expectations_1_1_engine_error.html":[5,0,0,2,0],
-"structgridfire_1_1expectations_1_1_engine_error.html":[7,0,0,2,0],
-"structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897":[5,0,0,2,0,1],
-"structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897":[7,0,0,2,0,1],
-"structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7":[5,0,0,2,0,2],
-"structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7":[7,0,0,2,0,2],
-"structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897":[5,0,0,2,0,4],
-"structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897":[7,0,0,2,0,4],
-"structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc":[5,0,0,2,0,3],
-"structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc":[7,0,0,2,0,3],
-"structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa":[5,0,0,2,0,0],
-"structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa":[7,0,0,2,0,0],
-"structgridfire_1_1expectations_1_1_engine_index_error.html":[5,0,0,2,1],
-"structgridfire_1_1expectations_1_1_engine_index_error.html":[7,0,0,2,1],
-"structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e":[5,0,0,2,1,2],
-"structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e":[7,0,0,2,1,2],
-"structgridfire_1_1expectations_1_1_engine_index_error.html#ab44bba2a197d43319e65cd200cd347b0":[5,0,0,2,1,0],
-"structgridfire_1_1expectations_1_1_engine_index_error.html#ab44bba2a197d43319e65cd200cd347b0":[7,0,0,2,1,0],
-"structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903":[5,0,0,2,1,1],
-"structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903":[7,0,0,2,1,1],
-"structgridfire_1_1expectations_1_1_stale_engine_error.html":[5,0,0,2,2],
-"structgridfire_1_1expectations_1_1_stale_engine_error.html":[7,0,0,2,2],
-"structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590":[5,0,0,2,2,2],
-"structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590":[7,0,0,2,2,2],
-"structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10":[5,0,0,2,2,0],
-"structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10":[7,0,0,2,2,0],
-"structgridfire_1_1expectations_1_1_stale_engine_error.html#ad8ba0f62a2da0d93aba429181e7e6f84":[5,0,0,2,2,1],
-"structgridfire_1_1expectations_1_1_stale_engine_error.html#ad8ba0f62a2da0d93aba429181e7e6f84":[7,0,0,2,2,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html":[5,0,0,4,4,0],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html":[7,0,0,4,4,0],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a2da59e4f6e2ba3eff581bacabbf387de":[5,0,0,4,4,0,2],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a2da59e4f6e2ba3eff581bacabbf387de":[7,0,0,4,4,0,2],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a5f673ab0425f06f3639cc9b5200ee3af":[5,0,0,4,4,0,0],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a5f673ab0425f06f3639cc9b5200ee3af":[7,0,0,4,4,0,0],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070":[5,0,0,4,4,0,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070":[7,0,0,4,4,0,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#aa99e1fa2fd4937592c066b0df16f377f":[5,0,0,4,4,0,3],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#aa99e1fa2fd4937592c066b0df16f377f":[7,0,0,4,4,0,3],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html":[5,0,0,4,4,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html":[7,0,0,4,4,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a3cb7ee6f3031997aab99c5502b61d90e":[5,0,0,4,4,1,0],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a3cb7ee6f3031997aab99c5502b61d90e":[7,0,0,4,4,1,0],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a48e170f77812fdbc06cff18267b241ca":[5,0,0,4,4,1,3],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a48e170f77812fdbc06cff18267b241ca":[7,0,0,4,4,1,3],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a750aa8cd8aa8b8da6d1f0db1cc66233d":[5,0,0,4,4,1,2],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a750aa8cd8aa8b8da6d1f0db1cc66233d":[7,0,0,4,4,1,2],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a7d291ba80f958fe34ae72b21c6fab380":[5,0,0,4,4,1,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a7d291ba80f958fe34ae72b21c6fab380":[7,0,0,4,4,1,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html":[5,0,0,4,4,2],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html":[7,0,0,4,4,2],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aea71e9198606e0ba393321178f988fcc":[5,0,0,4,4,2,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aea71e9198606e0ba393321178f988fcc":[7,0,0,4,4,2,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aec714697f3f5102124561252233fc350":[5,0,0,4,4,2,0],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aec714697f3f5102124561252233fc350":[7,0,0,4,4,2,0],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html":[5,0,0,4,0,0],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html":[7,0,0,4,0,0],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a64c1cef58c1bdeab1fcc7f9a30a71609":[5,0,0,4,0,0,2],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a64c1cef58c1bdeab1fcc7f9a30a71609":[7,0,0,4,0,0,2],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a677505655a1c6922dfa9b32b70d7e815":[5,0,0,4,0,0,0],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a677505655a1c6922dfa9b32b70d7e815":[7,0,0,4,0,0,0],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#abb1416e2d8d4d27264c9eece547006b6":[5,0,0,4,0,0,3],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#abb1416e2d8d4d27264c9eece547006b6":[7,0,0,4,0,0,3],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#acf5c38826050594aee98d746d0ba40b2":[5,0,0,4,0,0,1],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#acf5c38826050594aee98d746d0ba40b2":[7,0,0,4,0,0,1],
-"structgridfire_1_1reaclib_1_1_reaction_record.html":[5,0,0,5,0],
-"structgridfire_1_1reaclib_1_1_reaction_record.html":[7,0,0,5,0],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a2165deb1c0a54a5086b496cf34604fa5":[5,0,0,5,0,2],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a2165deb1c0a54a5086b496cf34604fa5":[7,0,0,5,0,2],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a523b7cfb0a6d8ddccd785aef2f425ad1":[5,0,0,5,0,7],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a523b7cfb0a6d8ddccd785aef2f425ad1":[7,0,0,5,0,7],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc":[5,0,0,5,0,0],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc":[7,0,0,5,0,0],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a67afc513db8dbcc43d79733e22ca8d39":[5,0,0,5,0,5],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a67afc513db8dbcc43d79733e22ca8d39":[7,0,0,5,0,5],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0":[5,0,0,5,0,1],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0":[7,0,0,5,0,1],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd":[5,0,0,5,0,6],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd":[7,0,0,5,0,6],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#aeeb8a1e078a27420e398663825cce644":[5,0,0,5,0,4],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#aeeb8a1e078a27420e398663825cce644":[7,0,0,5,0,4],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#af1b1d3b0308d965ef0697b247fcf9082":[5,0,0,5,0,3],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#af1b1d3b0308d965ef0697b247fcf9082":[7,0,0,5,0,3],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html":[5,0,0,6,1],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html":[7,0,0,6,1],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2a9316d19bc2e8bf0a7872eb6fe8a53f":[5,0,0,6,1,3],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2a9316d19bc2e8bf0a7872eb6fe8a53f":[7,0,0,6,1,3],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2fa6b65e300dcd181222b743c2b3d6ed":[5,0,0,6,1,1],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2fa6b65e300dcd181222b743c2b3d6ed":[7,0,0,6,1,1],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f":[5,0,0,6,1,0],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f":[7,0,0,6,1,0],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a3d047485ebb57d6c763adfe4aae493b1":[5,0,0,6,1,4],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a3d047485ebb57d6c763adfe4aae493b1":[7,0,0,6,1,4],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a8c79db4e649b4eb1d29c43ebe4e95458":[5,0,0,6,1,6],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a8c79db4e649b4eb1d29c43ebe4e95458":[7,0,0,6,1,6],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ace9dbd928e179784e47eaa108ce8d721":[5,0,0,6,1,2],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ace9dbd928e179784e47eaa108ce8d721":[7,0,0,6,1,2],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#adf8e6ed7f91cb9e15d1469a808b1877a":[5,0,0,6,1,7],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#adf8e6ed7f91cb9e15d1469a808b1877a":[7,0,0,6,1,7],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ae57b2eac71cb4ed9947f40c9cb8fc3ca":[5,0,0,6,1,5],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ae57b2eac71cb4ed9947f40c9cb8fc3ca":[7,0,0,6,1,5],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html":[5,0,0,8,0,0],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html":[7,0,0,8,0,0],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0":[5,0,0,8,0,0,2],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0":[7,0,0,8,0,0,2],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83":[5,0,0,8,0,0,4],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83":[7,0,0,8,0,0,4],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4":[5,0,0,8,0,0,3],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4":[7,0,0,8,0,0,3],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9":[5,0,0,8,0,0,1],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9":[7,0,0,8,0,0,1],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25":[5,0,0,8,0,0,0],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25":[7,0,0,8,0,0,0],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html":[5,0,0,8,0,1],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html":[7,0,0,8,0,1],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a035962dfdfc13d255def98befefcccd9":[5,0,0,8,0,1,7],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a035962dfdfc13d255def98befefcccd9":[7,0,0,8,0,1,7],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a0eed45bfe5296e4ca9f87b5b53841931":[5,0,0,8,0,1,11],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a0eed45bfe5296e4ca9f87b5b53841931":[7,0,0,8,0,1,11],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a17b83f2478395c934c4ec2c964e9d35e":[5,0,0,8,0,1,5],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a17b83f2478395c934c4ec2c964e9d35e":[7,0,0,8,0,1,5],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a226b007bfc9960b5c0bb7b88b4f122da":[5,0,0,8,0,1,2],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a226b007bfc9960b5c0bb7b88b4f122da":[7,0,0,8,0,1,2],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef":[5,0,0,8,0,1,14],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef":[7,0,0,8,0,1,14],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a49268e65b89444c3caf1e69323ce545b":[5,0,0,8,0,1,8],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a49268e65b89444c3caf1e69323ce545b":[7,0,0,8,0,1,8],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a4ba187f1a0deca0a82ac3c9a14883855":[5,0,0,8,0,1,0],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a4ba187f1a0deca0a82ac3c9a14883855":[7,0,0,8,0,1,0],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a":[5,0,0,8,0,1,1],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a":[7,0,0,8,0,1,1],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a69d773a1cfe4804876dbf23de1f212c9":[5,0,0,8,0,1,9],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a69d773a1cfe4804876dbf23de1f212c9":[7,0,0,8,0,1,9],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a6cc605a83b5ac5ae048d1044be284ada":[5,0,0,8,0,1,10],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a6cc605a83b5ac5ae048d1044be284ada":[7,0,0,8,0,1,10],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a70d801db98fe8e2e4e6010f37da29905":[5,0,0,8,0,1,6],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a70d801db98fe8e2e4e6010f37da29905":[7,0,0,8,0,1,6],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446":[5,0,0,8,0,1,13],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446":[7,0,0,8,0,1,13],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec":[5,0,0,8,0,1,4],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec":[7,0,0,8,0,1,4],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708":[5,0,0,8,0,1,12],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708":[7,0,0,8,0,1,12],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aec8c0a0b2fbb71cebb40c263f64385b3":[5,0,0,8,0,1,3],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aec8c0a0b2fbb71cebb40c263f64385b3":[7,0,0,8,0,1,3],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html":[5,0,0,8,0,2],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html":[7,0,0,8,0,2],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a349187ed1b13c91ef6f9d930db58d97b":[5,0,0,8,0,2,7],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a349187ed1b13c91ef6f9d930db58d97b":[7,0,0,8,0,2,7],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a3e4d242a2f5f6726b980119ed80a9901":[5,0,0,8,0,2,6],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a3e4d242a2f5f6726b980119ed80a9901":[7,0,0,8,0,2,6],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a53985d354dcaeda96dc39828c6c9d9d1":[5,0,0,8,0,2,5],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a53985d354dcaeda96dc39828c6c9d9d1":[7,0,0,8,0,2,5],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a6a293628e61f241b9d335cd223da5f7c":[5,0,0,8,0,2,4],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a6a293628e61f241b9d335cd223da5f7c":[7,0,0,8,0,2,4],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a838fdd3dd8beac8ca7e735921230ea2d":[5,0,0,8,0,2,13],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a838fdd3dd8beac8ca7e735921230ea2d":[7,0,0,8,0,2,13],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a85eab3fb76bcef5044b2be6cc60a46df":[5,0,0,8,0,2,9],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a85eab3fb76bcef5044b2be6cc60a46df":[7,0,0,8,0,2,9],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ab032139a719e551f888ae012ef8018ee":[5,0,0,8,0,2,1],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ab032139a719e551f888ae012ef8018ee":[7,0,0,8,0,2,1],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ad49305586fdc676f96161e91c6b863dd":[5,0,0,8,0,2,12],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ad49305586fdc676f96161e91c6b863dd":[7,0,0,8,0,2,12],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ad565c013b373f312f0f5157f11d02cef":[5,0,0,8,0,2,10],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ad565c013b373f312f0f5157f11d02cef":[7,0,0,8,0,2,10],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adab4b53a94b935f89f799bd5a67847a2":[5,0,0,8,0,2,11],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adab4b53a94b935f89f799bd5a67847a2":[7,0,0,8,0,2,11],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adc814e5288f42c8eaf21c628858881a0":[5,0,0,8,0,2,2],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adc814e5288f42c8eaf21c628858881a0":[7,0,0,8,0,2,2],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#aea1385260976dff133404db5b453ba98":[5,0,0,8,0,2,0],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#aea1385260976dff133404db5b453ba98":[7,0,0,8,0,2,0],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#afaebf35ef65567a7c824d5c14d479bb3":[5,0,0,8,0,2,3],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#afaebf35ef65567a7c824d5c14d479bb3":[7,0,0,8,0,2,3],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#afee439e7b59805a6b4dcffffa2b0e6e3":[5,0,0,8,0,2,8],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#afee439e7b59805a6b4dcffffa2b0e6e3":[7,0,0,8,0,2,8],
-"structgridfire_1_1solver_1_1_solver_context_base.html":[5,0,0,8,2],
-"structgridfire_1_1solver_1_1_solver_context_base.html":[7,0,0,8,2],
-"structgridfire_1_1solver_1_1_solver_context_base.html#a9cbef3cabc8524e542613ee50d8860c6":[5,0,0,8,2,1],
-"structgridfire_1_1solver_1_1_solver_context_base.html#a9cbef3cabc8524e542613ee50d8860c6":[7,0,0,8,2,1],
-"structgridfire_1_1solver_1_1_solver_context_base.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8":[5,0,0,8,2,0],
-"structgridfire_1_1solver_1_1_solver_context_base.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8":[7,0,0,8,2,0],
-"structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html":[5,0,1,0],
-"structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html":[7,0,1,0],
-"structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3":[5,0,1,0,0],
-"structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3":[7,0,1,0,0],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html":[5,0,1,1],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html":[7,0,1,1],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html#a4b76e7119050266952ded94d6f0544cb":[5,0,1,1,0],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html#a4b76e7119050266952ded94d6f0544cb":[7,0,1,1,0],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html":[5,0,1,2],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html":[7,0,1,2],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9":[5,0,1,2,0],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9":[7,0,1,2,0],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html":[5,0,1,3],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html":[7,0,1,3],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921":[5,0,1,3,0],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921":[7,0,1,3,0],
-"types_2bindings_8cpp.html":[8,0,1,2,8,0],
-"types_2bindings_8cpp.html#a37d2e0b6a2605d063eec5e2a64e9bcc5":[8,0,1,2,8,0,0],
-"types_2bindings_8h.html":[8,0,1,2,8,1],
-"types_2bindings_8h.html#a37d2e0b6a2605d063eec5e2a64e9bcc5":[8,0,1,2,8,1,0],
-"utils_2bindings_8cpp.html":[8,0,1,2,9,0],
-"utils_2bindings_8cpp.html#a7af842f50ca4a721518e716d0229697c":[8,0,1,2,9,0,0],
-"utils_2bindings_8h.html":[8,0,1,2,9,1],
-"utils_2bindings_8h.html#a9eefca377142320755a869fafc6311c7":[8,0,1,2,9,1,0]
+"engine_2bindings_8h.html#a73a2ec4150b3954550f16b97102ec993":[8,0,1,2,0,2,4],
+"engine_2bindings_8h.html#a73d427751e6a64952d52e7c2cc84d065":[8,0,1,2,0,2,2],
+"engine_2bindings_8h.html#a766b8bf2c08f2e81486752261ec89642":[8,0,1,2,0,2,3],
+"engine_2bindings_8h.html#a7ba5eb780fc02dab2b7be388ffa084f8":[8,0,1,2,0,2,0],
+"engine_2bindings_8h.html#ac12de48f4164b679dd7afb03c83ec4bf":[8,0,1,2,0,2,5],
+"engine_2bindings_8h.html#aef9864cec8e0891ee46c8a0d76de2c93":[8,0,1,2,0,2,1],
+"engine_8h.html":[8,0,1,0,0,0,4],
+"engine__abstract_8h.html":[8,0,1,0,0,0,5],
+"engine__adaptive_8cpp.html":[8,0,1,1,0,2,0],
+"engine__adaptive_8h.html":[8,0,1,0,0,0,3,0],
+"engine__approx8_8cpp.html":[8,0,1,1,0,3],
+"engine__approx8_8h.html":[8,0,1,0,0,0,6],
+"engine__defined_8cpp.html":[8,0,1,1,0,2,1],
+"engine__defined_8h.html":[8,0,1,0,0,0,3,1],
+"engine__graph_8cpp.html":[8,0,1,1,0,4],
+"engine__graph_8h.html":[8,0,1,0,0,0,7],
+"engine__multiscale_8cpp.html":[8,0,1,1,0,2,2],
+"engine__multiscale_8h.html":[8,0,1,0,0,0,3,2],
+"engine__partitioning__trigger_8cpp.html":[8,0,1,1,5,0,0,0],
+"engine__partitioning__trigger_8h.html":[8,0,1,0,0,8,0,0,0],
+"engine__priming_8cpp.html":[8,0,1,1,0,2,3],
+"engine__priming_8h.html":[8,0,1,0,0,0,3,3],
+"engine__procedures_8h.html":[8,0,1,0,0,0,1,1],
+"engine__types_8h.html":[8,0,1,0,0,0,2,1],
+"engine__view__abstract_8h.html":[8,0,1,0,0,0,3,4],
+"engine__views_8h.html":[8,0,1,0,0,0,3,5],
+"error__engine_8h.html":[8,0,1,0,0,1,0],
+"examples.html":[9],
+"exceptions_2bindings_8cpp.html":[8,0,1,2,1,0],
+"exceptions_2bindings_8cpp.html#a5566602745756f64f21905217b6d21fd":[8,0,1,2,1,0,0],
+"exceptions_2bindings_8h.html":[8,0,1,2,1,1],
+"exceptions_2bindings_8h.html#a2a0ce1da699ce25f3afdce57cde65471":[8,0,1,2,1,1,0],
+"exceptions_8h.html":[8,0,1,0,0,1,1],
+"expectations_2bindings_8cpp.html":[8,0,1,2,2,0],
+"expectations_2bindings_8cpp.html#ad8b382f2ef7888e5b49bcc117439d843":[8,0,1,2,2,0,0],
+"expectations_2bindings_8h.html":[8,0,1,2,2,1],
+"expectations_2bindings_8h.html#ac4570540d44fb7e3136f63448fc2c22c":[8,0,1,2,2,1,0],
+"expectations_8h.html":[8,0,1,0,0,2,0],
+"expected__engine_8h.html":[8,0,1,0,0,2,1],
+"files.html":[8,0],
+"functions.html":[7,3,0],
+"functions.html":[7,3,0,0],
+"functions_b.html":[7,3,0,1],
+"functions_c.html":[7,3,0,2],
+"functions_d.html":[7,3,0,3],
+"functions_e.html":[7,3,0,4],
+"functions_enum.html":[7,3,4],
+"functions_eval.html":[7,3,5],
+"functions_f.html":[7,3,0,5],
+"functions_func.html":[7,3,1],
+"functions_func.html":[7,3,1,0],
+"functions_func_b.html":[7,3,1,1],
+"functions_func_c.html":[7,3,1,2],
+"functions_func_d.html":[7,3,1,3],
+"functions_func_e.html":[7,3,1,4],
+"functions_func_f.html":[7,3,1,5],
+"functions_func_g.html":[7,3,1,6],
+"functions_func_h.html":[7,3,1,7],
+"functions_func_i.html":[7,3,1,8],
+"functions_func_l.html":[7,3,1,9],
+"functions_func_m.html":[7,3,1,10],
+"functions_func_n.html":[7,3,1,11],
+"functions_func_o.html":[7,3,1,12],
+"functions_func_p.html":[7,3,1,13],
+"functions_func_q.html":[7,3,1,14],
+"functions_func_r.html":[7,3,1,15],
+"functions_func_s.html":[7,3,1,16],
+"functions_func_t.html":[7,3,1,17],
+"functions_func_u.html":[7,3,1,18],
+"functions_func_v.html":[7,3,1,19],
+"functions_func_w.html":[7,3,1,20],
+"functions_func_~.html":[7,3,1,21],
+"functions_g.html":[7,3,0,6],
+"functions_h.html":[7,3,0,7],
+"functions_i.html":[7,3,0,8],
+"functions_j.html":[7,3,0,9],
+"functions_k.html":[7,3,0,10],
+"functions_l.html":[7,3,0,11],
+"functions_m.html":[7,3,0,12],
+"functions_n.html":[7,3,0,13],
+"functions_o.html":[7,3,0,14],
+"functions_p.html":[7,3,0,15],
+"functions_q.html":[7,3,0,16],
+"functions_r.html":[7,3,0,17],
+"functions_rela.html":[7,3,6],
+"functions_s.html":[7,3,0,18],
+"functions_t.html":[7,3,0,19],
+"functions_type.html":[7,3,3],
+"functions_u.html":[7,3,0,20],
+"functions_v.html":[7,3,0,21],
+"functions_vars.html":[7,3,2],
+"functions_vars.html":[7,3,2,0],
+"functions_vars_b.html":[7,3,2,1],
+"functions_vars_c.html":[7,3,2,2],
+"functions_vars_d.html":[7,3,2,3],
+"functions_vars_e.html":[7,3,2,4],
+"functions_vars_f.html":[7,3,2,5],
+"functions_vars_g.html":[7,3,2,6],
+"functions_vars_i.html":[7,3,2,7],
+"functions_vars_k.html":[7,3,2,8],
+"functions_vars_l.html":[7,3,2,9],
+"functions_vars_m.html":[7,3,2,10],
+"functions_vars_n.html":[7,3,2,11],
+"functions_vars_o.html":[7,3,2,12],
+"functions_vars_p.html":[7,3,2,13],
+"functions_vars_q.html":[7,3,2,14],
+"functions_vars_r.html":[7,3,2,15],
+"functions_vars_s.html":[7,3,2,16],
+"functions_vars_t.html":[7,3,2,17],
+"functions_vars_u.html":[7,3,2,18],
+"functions_vars_v.html":[7,3,2,19],
+"functions_vars_y.html":[7,3,2,20],
+"functions_vars_z.html":[7,3,2,21],
+"functions_w.html":[7,3,0,22],
+"functions_y.html":[7,3,0,23],
+"functions_z.html":[7,3,0,24],
+"functions_~.html":[7,3,0,25],
+"globals.html":[8,1,0],
+"globals_defs.html":[8,1,4],
+"globals_func.html":[8,1,1],
+"globals_type.html":[8,1,3],
+"globals_vars.html":[8,1,2],
+"hierarchy.html":[7,2],
+"index.html":[],
+"index.html#autotoc_md0":[0],
+"index.html#autotoc_md1":[0,0],
+"index.html#autotoc_md10":[1,1,1],
+"index.html#autotoc_md11":[1,2],
+"index.html#autotoc_md12":[1,2,0],
+"index.html#autotoc_md13":[1,2,0,0],
+"index.html#autotoc_md14":[1,2,0,1],
+"index.html#autotoc_md15":[1,2,1],
+"index.html#autotoc_md16":[1,2,1,0],
+"index.html#autotoc_md17":[1,2,1,1],
+"index.html#autotoc_md18":[1,2,1,2],
+"index.html#autotoc_md19":[1,2,1,2,0],
+"index.html#autotoc_md2":[0,1],
+"index.html#autotoc_md20":[1,2,1,2,1],
+"index.html#autotoc_md21":[1,2,1,2,2],
+"index.html#autotoc_md22":[1,2,2],
+"index.html#autotoc_md23":[1,2,3],
+"index.html#autotoc_md24":[1,2,3,0],
+"index.html#autotoc_md25":[1,2,4],
+"index.html#autotoc_md26":[1,2,5],
+"index.html#autotoc_md27":[1,3],
+"index.html#autotoc_md28":[1,4],
+"index.html#autotoc_md29":[1,4,0],
+"index.html#autotoc_md3":[1],
+"index.html#autotoc_md30":[1,4,1],
+"index.html#autotoc_md31":[1,4,2],
+"index.html#autotoc_md32":[1,4,3],
+"index.html#autotoc_md33":[1,5],
+"index.html#autotoc_md34":[1,6],
+"index.html#autotoc_md35":[1,6,0],
+"index.html#autotoc_md36":[1,7],
+"index.html#autotoc_md37":[1,7,0],
+"index.html#autotoc_md38":[1,7,1],
+"index.html#autotoc_md39":[1,7,1,0],
+"index.html#autotoc_md4":[1,0],
+"index.html#autotoc_md40":[1,7,1,1],
+"index.html#autotoc_md41":[1,7,2],
+"index.html#autotoc_md42":[1,7,3],
+"index.html#autotoc_md43":[1,7,4],
+"index.html#autotoc_md44":[1,8],
+"index.html#autotoc_md45":[2],
+"index.html#autotoc_md46":[2,0],
+"index.html#autotoc_md47":[2,0,0],
+"index.html#autotoc_md48":[2,0,1],
+"index.html#autotoc_md49":[2,0,2],
+"index.html#autotoc_md5":[1,0,0],
+"index.html#autotoc_md50":[2,0,3],
+"index.html#autotoc_md51":[2,0,3,0],
+"index.html#autotoc_md52":[2,0,4],
+"index.html#autotoc_md53":[2,0,4,0],
+"index.html#autotoc_md54":[2,1],
+"index.html#autotoc_md55":[2,1,0],
+"index.html#autotoc_md56":[2,1,1],
+"index.html#autotoc_md57":[3],
+"index.html#autotoc_md6":[1,0,1],
+"index.html#autotoc_md7":[1,0,2],
+"index.html#autotoc_md8":[1,1],
+"index.html#autotoc_md9":[1,1,0],
+"io_2bindings_8cpp.html":[8,0,1,2,3,1],
+"io_2bindings_8cpp.html#a3f76dbefdeeb3b49828ce36586899695":[8,0,1,2,3,1,0],
+"io_2bindings_8h.html":[8,0,1,2,3,2],
+"io_2bindings_8h.html#aba28f9bd688764ab1905af9d40d4b428":[8,0,1,2,3,2,0],
+"io_8h.html":[8,0,1,0,0,4,0],
+"logging_8cpp.html":[8,0,1,1,6,0],
+"logging_8h.html":[8,0,1,0,0,10,0],
+"md_docs_2static_2usage.html":[4],
+"md_docs_2static_2usage.html#autotoc_md60":[4,0],
+"md_docs_2static_2usage.html#autotoc_md61":[4,0,0],
+"md_docs_2static_2usage.html#autotoc_md62":[4,0,1],
+"md_docs_2static_2usage.html#autotoc_md64":[4,1],
+"md_docs_2static_2usage.html#autotoc_md66":[4,2],
+"md_docs_2static_2usage.html#autotoc_md68":[4,3],
+"md_docs_2static_2usage.html#autotoc_md70":[4,4],
+"namespacegridfire.html":[5,0,0],
+"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57":[5,0,0,37],
+"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a100e3bf0197221c19b222badf42aa964":[5,0,0,37,4],
+"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a264572d66aed5373d19dc80c7cde1f46":[5,0,0,37,2],
+"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a3fc719e07f9f63e7f11a3d4fb74b476f":[5,0,0,37,3],
+"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a5105376c2b90747e00bed5bf2953dd56":[5,0,0,37,5],
+"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a928d0f1285ee7d36c1c2fa1b1b7a164c":[5,0,0,37,1],
+"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75":[5,0,0,37,0],
+"namespacegridfire.html#a023dc09e48b62e3f93f9a8b70cb2c63f":[5,0,0,45],
+"namespacegridfire.html#a02be158966bf82a91b159b7a962c3fa5":[5,0,0,53],
+"namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc":[5,0,0,34],
+"namespacegridfire.html#a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f":[5,0,0,46],
+"namespacegridfire.html#a384323338f13166d87c7ac047434bd38":[5,0,0,41],
+"namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6":[5,0,0,35],
+"namespacegridfire.html#a3cd451f4b7a7bc7c2d7007ebb343e9ac":[5,0,0,47],
+"namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37":[5,0,0,38],
+"namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea":[5,0,0,38,0],
+"namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182":[5,0,0,38,1],
+"namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2":[5,0,0,38,2],
+"namespacegridfire.html#a4e9cabad30b57d636c2f0d73d8cc6bb4":[5,0,0,49],
+"namespacegridfire.html#a553717597efebcea94232a4a1d80e31d":[5,0,0,43],
+"namespacegridfire.html#a58a036e8883e75a8abd3e18798563f71":[5,0,0,40],
+"namespacegridfire.html#a898dfe22579e649935645cbd6f073178":[5,0,0,36],
+"namespacegridfire.html#a8995b949592d59850e45a3fd27306369":[5,0,0,42],
+"namespacegridfire.html#a8b245f261cd8d1711ae8d593b054cf98":[5,0,0,48],
+"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154":[5,0,0,39],
+"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931":[5,0,0,39,5],
+"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287":[5,0,0,39,2],
+"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a":[5,0,0,39,0],
+"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45":[5,0,0,39,1],
+"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a":[5,0,0,39,4],
+"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e":[5,0,0,39,6],
+"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f":[5,0,0,39,3],
+"namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06":[5,0,0,50],
+"namespacegridfire.html#ab6e14208fad69f4031411a9346c12397":[5,0,0,44],
+"namespacegridfire.html#ada3c137c014ecd8d06200fea2d1a9f50":[5,0,0,51],
+"namespacegridfire.html#ae01b1738df1921db565bcbd68dd6cf64":[5,0,0,52],
+"namespacegridfire_1_1approx8.html":[5,0,0,0],
+"namespacegridfire_1_1approx8.html#a12cb71ba6ed03750af9e7659464197ea":[5,0,0,0,13],
+"namespacegridfire_1_1approx8.html#a16739298c01e56967ce784a9a957439f":[5,0,0,0,23],
+"namespacegridfire_1_1approx8.html#a20f9c48e60a5abf0b6868d1d05080222":[5,0,0,0,12],
+"namespacegridfire_1_1approx8.html#a2715e1a6421717991814892046b896e3":[5,0,0,0,26],
+"namespacegridfire_1_1approx8.html#a275aecf94e3145c2ff3d1756deda54ce":[5,0,0,0,4],
+"namespacegridfire_1_1approx8.html#a34f18b2345a8fd8d96bbe1a9825c1f21":[5,0,0,0,16],
+"namespacegridfire_1_1approx8.html#a3a9861a77093effdfc061743eb13fcdb":[5,0,0,0,15],
+"namespacegridfire_1_1approx8.html#a51d139de74680c8437d20a3fa622200c":[5,0,0,0,11],
+"namespacegridfire_1_1approx8.html#a593cd66c1eadae4da233ae73b4aad4a3":[5,0,0,0,14],
+"namespacegridfire_1_1approx8.html#a62c2f567dc1ada3816843c8586aad0dc":[5,0,0,0,22],
+"namespacegridfire_1_1approx8.html#a70eb18e9706ac28a308dcb4fcec7421f":[5,0,0,0,8],
+"namespacegridfire_1_1approx8.html#a7387008e672ea12d277e2194745a4c93":[5,0,0,0,21],
+"namespacegridfire_1_1approx8.html#a890ad24c2cdb15fb76a3ff8a7b8d77db":[5,0,0,0,10],
+"namespacegridfire_1_1approx8.html#a8c30b7e6099c5fc2aa94f9c68fd075dc":[5,0,0,0,9],
+"namespacegridfire_1_1approx8.html#a9a90b83dd4aa2dcc928bd14f4678dcef":[5,0,0,0,17]
 };
diff --git a/docs/html/navtreeindex8.js b/docs/html/navtreeindex8.js
new file mode 100644
index 00000000..5f2f0504
--- /dev/null
+++ b/docs/html/navtreeindex8.js
@@ -0,0 +1,253 @@
+var NAVTREEINDEX8 =
+{
+"namespacegridfire_1_1approx8.html#aa04f907d4ef6a1b6b2a9a28d4bb53882":[5,0,0,0,6],
+"namespacegridfire_1_1approx8.html#aaa49cb0c9ad4b0b9dd0f9b5e192ca12a":[5,0,0,0,5],
+"namespacegridfire_1_1approx8.html#aafd24448743672021dd4507316060817":[5,0,0,0,25],
+"namespacegridfire_1_1approx8.html#ac309c160c806208bf01bebeb29c23896":[5,0,0,0,18],
+"namespacegridfire_1_1approx8.html#acdbb3ee2ef22bfd9c836324285d0da98":[5,0,0,0,19],
+"namespacegridfire_1_1approx8.html#ad7a6f894fa4bdeebb4cae0eba3b2c210":[5,0,0,0,20],
+"namespacegridfire_1_1approx8.html#aed8175751b4920a53922f87f8c0e63c4":[5,0,0,0,24],
+"namespacegridfire_1_1approx8.html#af7d9b901dbb3c88c151d927912d5121f":[5,0,0,0,7],
+"namespacegridfire_1_1diagnostics.html":[5,0,0,1],
+"namespacegridfire_1_1diagnostics.html#a066ee899bd259062716f25abae3890b0":[5,0,0,1,0],
+"namespacegridfire_1_1diagnostics.html#a11c0d538e7244bee168d7f9217442128":[5,0,0,1,1],
+"namespacegridfire_1_1diagnostics.html#a9d95a6c9c4a942d71ff4c8046fe4107a":[5,0,0,1,2],
+"namespacegridfire_1_1exceptions.html":[5,0,0,2],
+"namespacegridfire_1_1expectations.html":[5,0,0,3],
+"namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87c":[5,0,0,3,3],
+"namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca36fc6065a3e970bc3e6b2e59da52bf2a":[5,0,0,3,3,0],
+"namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca4d855a061b3066dc14a3b12ed26b5456":[5,0,0,3,3,2],
+"namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87cacb4ae3b37047fb4b2c0d16f8bf84f076":[5,0,0,3,3,1],
+"namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7":[5,0,0,3,4],
+"namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7a109aa03c8823fcc0ab193b7e48664cbf":[5,0,0,3,4,0],
+"namespacegridfire_1_1io.html":[5,0,0,4],
+"namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352":[5,0,0,4,3],
+"namespacegridfire_1_1partition.html":[5,0,0,5],
+"namespacegridfire_1_1partition.html#a1e08a3c20c55bc6fa4a4ecdf7ea57b8f":[5,0,0,5,7],
+"namespacegridfire_1_1partition.html#a84de6308486d35ce8bc1a9dea52dfa4a":[5,0,0,5,8],
+"namespacegridfire_1_1partition.html#a97237521bc760f7521346f8db472dc8e":[5,0,0,5,6],
+"namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728c":[5,0,0,5,5],
+"namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728ca4ca5b5dcd7343b06b860f05f3bc454b1":[5,0,0,5,5,0],
+"namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335":[5,0,0,5,5,1],
+"namespacegridfire_1_1partition_1_1record.html":[5,0,0,5,0],
+"namespacegridfire_1_1rates.html":[5,0,0,6],
+"namespacegridfire_1_1rates_1_1weak.html":[5,0,0,6,0],
+"namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550":[5,0,0,6,0,13],
+"namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550a3659baf2b06bba6c02bad8316d517761":[5,0,0,6,0,13,0],
+"namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550a9a10f345b0f755d461a8673a5e9ef6b4":[5,0,0,6,0,13,1],
+"namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4":[5,0,0,6,0,10],
+"namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4a1516ba0949425312ba92ea385c80dc7a":[5,0,0,6,0,10,0],
+"namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4a9a10f345b0f755d461a8673a5e9ef6b4":[5,0,0,6,0,10,2],
+"namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4acc038b1c5dbfcede2eaa525fe0e2379d":[5,0,0,6,0,10,1],
+"namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae":[5,0,0,6,0,12],
+"namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea1448b5920e7c95f07cbc08d3ba5b9746":[5,0,0,6,0,12,1],
+"namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755":[5,0,0,6,0,12,0],
+"namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea5257ed2407fcbb45ab05897fdea80c2b":[5,0,0,6,0,12,2],
+"namespacegridfire_1_1rates_1_1weak.html#a7a262a98e1956c33645bad4eb4e40c7a":[5,0,0,6,0,16],
+"namespacegridfire_1_1rates_1_1weak.html#a81f6133710abef28d9d2b030fdbaaeef":[5,0,0,6,0,15],
+"namespacegridfire_1_1rates_1_1weak.html#ac48364695089056d9a9b10689c4338e7":[5,0,0,6,0,17],
+"namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7":[5,0,0,6,0,14],
+"namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a12122315f1a94a10826f77a8fd949a94":[5,0,0,6,0,14,1],
+"namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7":[5,0,0,6,0,14,2],
+"namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a2f146a0cd66e2d010c8802852db26759":[5,0,0,6,0,14,0],
+"namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7ae0be5539e1cf1c424806baa62540aa9d":[5,0,0,6,0,14,3],
+"namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70ca":[5,0,0,6,0,11],
+"namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa2712e9cfc69c4ee0c4ed136338acb6cc":[5,0,0,6,0,11,5],
+"namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa3fde0fbf2166dfb3dd60458c535699d8":[5,0,0,6,0,11,0],
+"namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa8c2cdafd7125a278e6e0da4c04e29d9e":[5,0,0,6,0,11,4],
+"namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa8d99b7a21c927a7b8274caaf23290de6":[5,0,0,6,0,11,1],
+"namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caaabd6fefb3f84f632c3968acfcd76d554":[5,0,0,6,0,11,2],
+"namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caae6f2e17ddd61e72e331faf8700bbedef":[5,0,0,6,0,11,3],
+"namespacegridfire_1_1reaclib.html":[5,0,0,7],
+"namespacegridfire_1_1reaclib.html#a02ff11b88be94392151873e06a30b276":[5,0,0,7,2],
+"namespacegridfire_1_1reaclib.html#a1f75b17a44c23261a221f7558b1a63d9":[5,0,0,7,5],
+"namespacegridfire_1_1reaclib.html#a5f2326f2f76cb1895d6cf5daed9b030b":[5,0,0,7,1],
+"namespacegridfire_1_1reaclib.html#a6bb94d5adc7bb9db5a67f770f7453e63":[5,0,0,7,3],
+"namespacegridfire_1_1reaclib.html#af6ff0dfe7ffe34c73ba9acbab5ef8a66":[5,0,0,7,6],
+"namespacegridfire_1_1reaclib.html#afc0deac6cbef076e8884e66fd3ab66e0":[5,0,0,7,4],
+"namespacegridfire_1_1reaction.html":[5,0,0,8],
+"namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e":[5,0,0,8,5],
+"namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74ea32b0fb6c82a2ec42865b2c823216baa9":[5,0,0,8,5,2],
+"namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74ea32c7d8943bec86a6d7d5e03598670ca8":[5,0,0,8,5,0],
+"namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74eaf9885ed04411bef7b70f78b643c6a220":[5,0,0,8,5,1],
+"namespacegridfire_1_1reaction.html#af34403cccdb4a091e979f0f895be2f8c":[5,0,0,8,6],
+"namespacegridfire_1_1screening.html":[5,0,0,9],
+"namespacegridfire_1_1screening.html#a6ca8556d27ac373e176f5b23437c416e":[5,0,0,9,6],
+"namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25":[5,0,0,9,5],
+"namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8":[5,0,0,9,5,1],
+"namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71":[5,0,0,9,5,0],
+"namespacegridfire_1_1screening.html#ae7dd1a7ccb7bf3c05084094ab008d8a3":[5,0,0,9,4],
+"namespacegridfire_1_1solver.html":[5,0,0,10],
+"namespacegridfire_1_1solver.html#a8118d08bc25e439754b43a3f5ecc1db3":[5,0,0,10,3],
+"namespacegridfire_1_1trigger.html":[5,0,0,11],
+"namespacegridfire_1_1trigger.html#a5e0fe21f3356426f26b109cdeb1edcd9":[5,0,0,11,8],
+"namespacegridfire_1_1trigger_1_1solver.html":[5,0,0,11,0],
+"namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html":[5,0,0,11,0,0],
+"namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html#a26555ea09be620dabc5f9644be8f9908":[5,0,0,11,0,0,3],
+"namespacegridfire_1_1utils.html":[5,0,0,12],
+"namespacegridfire_1_1utils.html#a05fda32d3fc4ab10060b8c4c251c2f3d":[5,0,0,12,3],
+"namespacegridfire_1_1utils.html#a6451ba6762273b91a8281043cfaa5d2a":[5,0,0,12,2],
+"namespacemembers.html":[5,1,0],
+"namespacemembers_enum.html":[5,1,4],
+"namespacemembers_eval.html":[5,1,5],
+"namespacemembers_func.html":[5,1,1],
+"namespacemembers_type.html":[5,1,3],
+"namespacemembers_vars.html":[5,1,2],
+"namespaces.html":[5,0],
+"namespacestd.html":[5,0,1],
+"network_8cpp.html":[8,0,1,1,7],
+"network_8h.html":[8,0,1,0,0,11],
+"network__file_8cpp.html":[8,0,1,1,1,0],
+"network__file_8h.html":[8,0,1,0,0,4,1],
+"pages.html":[],
+"partition_2bindings_8cpp.html":[8,0,1,2,4,1],
+"partition_2bindings_8cpp.html#a2806baaec82e0e6d66b80348584e08fd":[8,0,1,2,4,1,2],
+"partition_2bindings_8cpp.html#a294e2893e79c41c10f914467d4858c1a":[8,0,1,2,4,1,5],
+"partition_2bindings_8cpp.html#a4c0db94b56a3b02482ac4fd654680cca":[8,0,1,2,4,1,3],
+"partition_2bindings_8cpp.html#a9d0d58ff2233e31a4ad88cc418b5ca64":[8,0,1,2,4,1,0],
+"partition_2bindings_8cpp.html#ac0a1def5c77c5554187c9d4f26fce77e":[8,0,1,2,4,1,1],
+"partition_2bindings_8cpp.html#ae1665331725ff38c39d7d3eec551ec97":[8,0,1,2,4,1,4],
+"partition_2bindings_8h.html":[8,0,1,2,4,2],
+"partition_2bindings_8h.html#a2806baaec82e0e6d66b80348584e08fd":[8,0,1,2,4,2,2],
+"partition_2bindings_8h.html#a294e2893e79c41c10f914467d4858c1a":[8,0,1,2,4,2,5],
+"partition_2bindings_8h.html#a4c0db94b56a3b02482ac4fd654680cca":[8,0,1,2,4,2,3],
+"partition_2bindings_8h.html#a9d0d58ff2233e31a4ad88cc418b5ca64":[8,0,1,2,4,2,0],
+"partition_2bindings_8h.html#ac0a1def5c77c5554187c9d4f26fce77e":[8,0,1,2,4,2,1],
+"partition_2bindings_8h.html#ae1665331725ff38c39d7d3eec551ec97":[8,0,1,2,4,2,4],
+"partition_8h.html":[8,0,1,0,0,5,1],
+"partition__abstract_8h.html":[8,0,1,0,0,5,2],
+"partition__composite_8cpp.html":[8,0,1,1,2,0,0],
+"partition__composite_8h.html":[8,0,1,0,0,5,0,0],
+"partition__ground_8cpp.html":[8,0,1,1,2,1],
+"partition__ground_8h.html":[8,0,1,0,0,5,3],
+"partition__rauscher__thielemann_8cpp.html":[8,0,1,1,2,2],
+"partition__rauscher__thielemann_8h.html":[8,0,1,0,0,5,4],
+"partition__types_8h.html":[8,0,1,0,0,5,5],
+"priming_8cpp.html":[8,0,1,1,0,1,1],
+"priming_8h.html":[8,0,1,0,0,0,1,2],
+"py__engine_8cpp.html":[8,0,1,2,0,0,0],
+"py__engine_8h.html":[8,0,1,2,0,0,1],
+"py__io_8cpp.html":[8,0,1,2,3,0,0],
+"py__io_8h.html":[8,0,1,2,3,0,1],
+"py__partition_8cpp.html":[8,0,1,2,4,0,0],
+"py__partition_8h.html":[8,0,1,2,4,0,1],
+"py__screening_8cpp.html":[8,0,1,2,6,0,0],
+"py__screening_8cpp.html#a4c5a7b887f31226ce0b82409f819833b":[8,0,1,2,6,0,0,0],
+"py__screening_8h.html":[8,0,1,2,6,0,1],
+"py__solver_8cpp.html":[8,0,1,2,7,0,0],
+"py__solver_8h.html":[8,0,1,2,7,0,1],
+"rauscher__thielemann__partition__data_8h.html":[8,0,1,0,0,5,6],
+"rauscher__thielemann__partition__data_8h.html#a5240736f3bdb43cf2cd63464c5835df1":[8,0,1,0,0,5,6,1],
+"rauscher__thielemann__partition__data_8h.html#a7b9a54e9c58848fe3205479acd770ffd":[8,0,1,0,0,5,6,0],
+"rauscher__thielemann__partition__data__record_8h.html":[8,0,1,0,0,5,7],
+"reaclib_8cpp.html":[8,0,1,1,3,1],
+"reaclib_8cpp.html#a2c6902cf3e699a1a65e871efa878a6ab":[8,0,1,1,3,1,5],
+"reaclib_8h.html":[8,0,1,0,0,6,1],
+"reaction_2bindings_8cpp.html":[8,0,1,2,5,0],
+"reaction_2bindings_8cpp.html#ae174b115814ec42920a799881cef1efa":[8,0,1,2,5,0,0],
+"reaction_2bindings_8h.html":[8,0,1,2,5,1],
+"reaction_2bindings_8h.html#a221d509fd54278898e2cbb73663f53d0":[8,0,1,2,5,1,0],
+"reaction_8cpp.html":[8,0,1,1,3,2],
+"reaction_8h.html":[8,0,1,0,0,6,2],
+"reactions__data_8h.html":[8,0,1,0,0,6,3],
+"reactions__data_8h.html#a32dea82d95667c3df395d58fb469ce2a":[8,0,1,0,0,6,3,1],
+"reactions__data_8h.html#aeb44e2b3b67960dfd83ecd7136c7d38b":[8,0,1,0,0,6,3,0],
+"reporting_8h.html":[8,0,1,0,0,0,2,2],
+"screening_2bindings_8cpp.html":[8,0,1,2,6,1],
+"screening_2bindings_8cpp.html#a4fcef69d9382bfbc315cb061038627f4":[8,0,1,2,6,1,0],
+"screening_2bindings_8h.html":[8,0,1,2,6,2],
+"screening_2bindings_8h.html#a9e1a938ffee0a1b9d913fa4968865b1b":[8,0,1,2,6,2,0],
+"screening_8h.html":[8,0,1,0,0,7,0],
+"screening__abstract_8h.html":[8,0,1,0,0,7,1],
+"screening__bare_8cpp.html":[8,0,1,1,4,0],
+"screening__bare_8h.html":[8,0,1,0,0,7,2],
+"screening__intermediate_8h.html":[8,0,1,0,0,7,3],
+"screening__types_8cpp.html":[8,0,1,1,4,1],
+"screening__types_8h.html":[8,0,1,0,0,7,4],
+"screening__weak_8cpp.html":[8,0,1,1,4,2],
+"screening__weak_8h.html":[8,0,1,0,0,7,5],
+"solver_2bindings_8cpp.html":[8,0,1,2,7,1],
+"solver_2bindings_8cpp.html#a722d28831d82cd075081fcf4b403479d":[8,0,1,2,7,1,0],
+"solver_2bindings_8h.html":[8,0,1,2,7,2],
+"solver_2bindings_8h.html#a7ff40d9e08fcb5028e914045447d46d3":[8,0,1,2,7,2,0],
+"solver_8h.html":[8,0,1,0,0,8,1],
+"solver__interfaces_8h.html":[8,0,1,0,0,3,0,0],
+"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html":[5,0,0,13,0],
+"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html":[7,0,0,12,0],
+"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a6c2e9087f6c8af5d89a5f0de7bd4a5b4":[5,0,0,13,0,0],
+"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a6c2e9087f6c8af5d89a5f0de7bd4a5b4":[7,0,0,12,0,0],
+"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#afc894db76a799be17be91130ff3ae6d9":[5,0,0,13,0,1],
+"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#afc894db76a799be17be91130ff3ae6d9":[7,0,0,12,0,1],
+"structgridfire_1_1_energy_derivatives.html":[5,0,0,16],
+"structgridfire_1_1_energy_derivatives.html":[7,0,0,15],
+"structgridfire_1_1_energy_derivatives.html#a70ae455c021a950fda7bda3022456542":[5,0,0,16,2],
+"structgridfire_1_1_energy_derivatives.html#a70ae455c021a950fda7bda3022456542":[7,0,0,15,2],
+"structgridfire_1_1_energy_derivatives.html#aa974abdff7fe09c9aea3fcf4ae13b652":[5,0,0,16,0],
+"structgridfire_1_1_energy_derivatives.html#aa974abdff7fe09c9aea3fcf4ae13b652":[7,0,0,15,0],
+"structgridfire_1_1_energy_derivatives.html#adc09db042b1fdee7468c807491245046":[5,0,0,16,1],
+"structgridfire_1_1_energy_derivatives.html#adc09db042b1fdee7468c807491245046":[7,0,0,15,1],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html":[5,0,0,20,2],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html":[7,0,0,19,2],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275":[5,0,0,20,2,2],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275":[7,0,0,19,2,2],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3ce63aa3ad88568f4eb0d3ca2414209f":[5,0,0,20,2,1],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3ce63aa3ad88568f4eb0d3ca2414209f":[7,0,0,19,2,1],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3e2e67e532970738d20491ea56b170f3":[5,0,0,20,2,0],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3e2e67e532970738d20491ea56b170f3":[7,0,0,19,2,0],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a510e380116e2e6d9158cf00fedac2666":[5,0,0,20,2,8],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a510e380116e2e6d9158cf00fedac2666":[7,0,0,19,2,8],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6bcfe2230dd54b088180d34389266b07":[5,0,0,20,2,4],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6bcfe2230dd54b088180d34389266b07":[7,0,0,19,2,4],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c":[5,0,0,20,2,5],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c":[7,0,0,19,2,5],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497":[5,0,0,20,2,3],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497":[7,0,0,19,2,3],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a9974f944a2cf5179baabebe09d60cf18":[5,0,0,20,2,7],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a9974f944a2cf5179baabebe09d60cf18":[7,0,0,19,2,7],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e":[5,0,0,20,2,6],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e":[7,0,0,19,2,6],
+"structgridfire_1_1_graph_engine_1_1constants.html":[5,0,0,20,1],
+"structgridfire_1_1_graph_engine_1_1constants.html":[7,0,0,19,1],
+"structgridfire_1_1_graph_engine_1_1constants.html#a29c8ae2b5c1d5fecd25c4fde2b623f7f":[5,0,0,20,1,1],
+"structgridfire_1_1_graph_engine_1_1constants.html#a29c8ae2b5c1d5fecd25c4fde2b623f7f":[7,0,0,19,1,1],
+"structgridfire_1_1_graph_engine_1_1constants.html#a3597bc632a5dd50aaa0044d8c18ca423":[5,0,0,20,1,3],
+"structgridfire_1_1_graph_engine_1_1constants.html#a3597bc632a5dd50aaa0044d8c18ca423":[7,0,0,19,1,3],
+"structgridfire_1_1_graph_engine_1_1constants.html#a5ccc874d6704615e0ce54c14dc67699d":[5,0,0,20,1,2],
+"structgridfire_1_1_graph_engine_1_1constants.html#a5ccc874d6704615e0ce54c14dc67699d":[7,0,0,19,1,2],
+"structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306":[5,0,0,20,1,0],
+"structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306":[7,0,0,19,1,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html":[5,0,0,21,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html":[7,0,0,20,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a0c3bd8d5918e344657227a09cd7e39a5":[5,0,0,21,0,5],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a0c3bd8d5918e344657227a09cd7e39a5":[7,0,0,20,0,5],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5df4f2c27e9eaa781c972a8c9b595787":[5,0,0,21,0,4],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5df4f2c27e9eaa781c972a8c9b595787":[7,0,0,20,0,4],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5eb642e161ffb5500ccc1e412849ee5e":[5,0,0,21,0,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5eb642e161ffb5500ccc1e412849ee5e":[7,0,0,20,0,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a73ca615753553f4a85160bd9f166da5b":[5,0,0,21,0,6],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a73ca615753553f4a85160bd9f166da5b":[7,0,0,20,0,6],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#aaf8b925a169a732c14f4451a33451f51":[5,0,0,21,0,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#aaf8b925a169a732c14f4451a33451f51":[7,0,0,20,0,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac18229250c4c160aada96e19325faa29":[5,0,0,21,0,7],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac18229250c4c160aada96e19325faa29":[7,0,0,20,0,7],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505":[5,0,0,21,0,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505":[7,0,0,20,0,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894":[5,0,0,21,0,0,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894":[7,0,0,20,0,0,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387":[5,0,0,21,0,0,5],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387":[7,0,0,20,0,0,5],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a":[5,0,0,21,0,0,3],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a":[7,0,0,20,0,0,3],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9e720102de6020a01552bc0e8935c566":[5,0,0,21,0,0,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9e720102de6020a01552bc0e8935c566":[7,0,0,20,0,0,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061":[5,0,0,21,0,0,4],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061":[7,0,0,20,0,0,4],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505aafefea58639f78d7c750970bbad28420":[5,0,0,21,0,0,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505aafefea58639f78d7c750970bbad28420":[7,0,0,20,0,0,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505ab1c94ca2fbc3e78fc30069c8d0f01680":[5,0,0,21,0,0,6],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505ab1c94ca2fbc3e78fc30069c8d0f01680":[7,0,0,20,0,0,6],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac55fb580dd4b9763cefe4612555b03f3":[5,0,0,21,0,3],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac55fb580dd4b9763cefe4612555b03f3":[7,0,0,20,0,3],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afb930f4472f4bb713f0b606194762c6f":[5,0,0,21,0,9],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afb930f4472f4bb713f0b606194762c6f":[7,0,0,20,0,9]
+};
diff --git a/docs/html/navtreeindex9.js b/docs/html/navtreeindex9.js
new file mode 100644
index 00000000..b1bda253
--- /dev/null
+++ b/docs/html/navtreeindex9.js
@@ -0,0 +1,253 @@
+var NAVTREEINDEX9 =
+{
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77":[5,0,0,21,0,8],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77":[7,0,0,20,0,8],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html":[5,0,0,21,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html":[7,0,0,20,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a23e6ba8dfe37b7f167837296a6654684":[5,0,0,21,1,10],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a23e6ba8dfe37b7f167837296a6654684":[7,0,0,20,1,10],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a24463a5e83e096ef368878ad29fdafb6":[5,0,0,21,1,3],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a24463a5e83e096ef368878ad29fdafb6":[7,0,0,20,1,3],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3ebf684b36e98da38d8ee6f0be4f91e2":[5,0,0,21,1,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3ebf684b36e98da38d8ee6f0be4f91e2":[7,0,0,20,1,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4804c6481c2706b04f48c1bbfd9fd5f8":[5,0,0,21,1,9],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4804c6481c2706b04f48c1bbfd9fd5f8":[7,0,0,20,1,9],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0":[5,0,0,21,1,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0":[7,0,0,20,1,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c":[5,0,0,21,1,11],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c":[7,0,0,20,1,11],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6f5611ca669567534df1bd793e90d2e3":[5,0,0,21,1,7],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6f5611ca669567534df1bd793e90d2e3":[7,0,0,20,1,7],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678":[5,0,0,21,1,12],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678":[7,0,0,20,1,12],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5":[5,0,0,21,1,14],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5":[7,0,0,20,1,14],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc":[5,0,0,21,1,4],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc":[7,0,0,20,1,4],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ac5bf1e4b4ac8435af5739ce970b373d7":[5,0,0,21,1,8],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ac5bf1e4b4ac8435af5739ce970b373d7":[7,0,0,20,1,8],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad19c39ced17e400af9f46478546a8fa1":[5,0,0,21,1,5],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad19c39ced17e400af9f46478546a8fa1":[7,0,0,20,1,5],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7353c20a6eac2ac0d9d13791577080d":[5,0,0,21,1,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7353c20a6eac2ac0d9d13791577080d":[7,0,0,20,1,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28":[5,0,0,21,1,6],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28":[7,0,0,20,1,6],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7":[5,0,0,21,1,13],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7":[7,0,0,20,1,13],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html":[5,0,0,21,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html":[7,0,0,20,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a165b68f0ebb30cda5ffaafa7c0f27617":[5,0,0,21,2,4],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a165b68f0ebb30cda5ffaafa7c0f27617":[7,0,0,20,2,4],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06":[5,0,0,21,2,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06":[7,0,0,20,2,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9":[5,0,0,21,2,7],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9":[7,0,0,20,2,7],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a":[5,0,0,21,2,3],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a":[7,0,0,20,2,3],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88":[5,0,0,21,2,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88":[7,0,0,20,2,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a":[5,0,0,21,2,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a":[7,0,0,20,2,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af2d7e09d940e0fb3ca24a4bc8ec01031":[5,0,0,21,2,8],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af2d7e09d940e0fb3ca24a4bc8ec01031":[7,0,0,20,2,8],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06":[5,0,0,21,2,6],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06":[7,0,0,20,2,6],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#aff54b71dd17051bc991f747a328c7d8e":[5,0,0,21,2,5],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#aff54b71dd17051bc991f747a328c7d8e":[7,0,0,20,2,5],
+"structgridfire_1_1_net_in.html":[5,0,0,22],
+"structgridfire_1_1_net_in.html":[7,0,0,21],
+"structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577":[5,0,0,22,3],
+"structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577":[7,0,0,21,3],
+"structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1":[5,0,0,22,7],
+"structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1":[7,0,0,21,7],
+"structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1":[5,0,0,22,1],
+"structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1":[7,0,0,21,1],
+"structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65":[5,0,0,22,0],
+"structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65":[7,0,0,21,0],
+"structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a":[5,0,0,22,4],
+"structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a":[7,0,0,21,4],
+"structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be":[5,0,0,22,6],
+"structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be":[7,0,0,21,6],
+"structgridfire_1_1_net_in.html#a6a5e909b46094ffa20da9a3da906e43f":[5,0,0,22,2],
+"structgridfire_1_1_net_in.html#a6a5e909b46094ffa20da9a3da906e43f":[7,0,0,21,2],
+"structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b":[5,0,0,22,5],
+"structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b":[7,0,0,21,5],
+"structgridfire_1_1_net_out.html":[5,0,0,23],
+"structgridfire_1_1_net_out.html":[7,0,0,22],
+"structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a":[5,0,0,23,1],
+"structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a":[7,0,0,22,1],
+"structgridfire_1_1_net_out.html#a210c0c395bc012c8ce6bef8cc6b683d6":[5,0,0,23,3],
+"structgridfire_1_1_net_out.html#a210c0c395bc012c8ce6bef8cc6b683d6":[7,0,0,22,3],
+"structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6":[5,0,0,23,4],
+"structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6":[7,0,0,22,4],
+"structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6":[5,0,0,23,5],
+"structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6":[7,0,0,22,5],
+"structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b":[5,0,0,23,0],
+"structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b":[7,0,0,22,0],
+"structgridfire_1_1_net_out.html#ad0bde670fb87bcab4de413e8284d624e":[5,0,0,23,2],
+"structgridfire_1_1_net_out.html#ad0bde670fb87bcab4de413e8284d624e":[7,0,0,22,2],
+"structgridfire_1_1_priming_report.html":[5,0,0,26],
+"structgridfire_1_1_priming_report.html":[7,0,0,25],
+"structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb":[5,0,0,26,2],
+"structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb":[7,0,0,25,2],
+"structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7":[5,0,0,26,1],
+"structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7":[7,0,0,25,1],
+"structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d":[5,0,0,26,3],
+"structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d":[7,0,0,25,3],
+"structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736":[5,0,0,26,0],
+"structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736":[7,0,0,25,0],
+"structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3":[5,0,0,26,4],
+"structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3":[7,0,0,25,4],
+"structgridfire_1_1_q_s_e_cache_config.html":[5,0,0,27],
+"structgridfire_1_1_q_s_e_cache_config.html":[7,0,0,26],
+"structgridfire_1_1_q_s_e_cache_config.html#a31d3e8d1b83109524c94641ce06fa351":[5,0,0,27,2],
+"structgridfire_1_1_q_s_e_cache_config.html#a31d3e8d1b83109524c94641ce06fa351":[7,0,0,26,2],
+"structgridfire_1_1_q_s_e_cache_config.html#a57b7ca68463aa9b78007e5cf35ebf7ce":[5,0,0,27,0],
+"structgridfire_1_1_q_s_e_cache_config.html#a57b7ca68463aa9b78007e5cf35ebf7ce":[7,0,0,26,0],
+"structgridfire_1_1_q_s_e_cache_config.html#af4dca2b24aa364fbbf6e99eb26774f40":[5,0,0,27,1],
+"structgridfire_1_1_q_s_e_cache_config.html#af4dca2b24aa364fbbf6e99eb26774f40":[7,0,0,26,1],
+"structgridfire_1_1_q_s_e_cache_key.html":[5,0,0,28],
+"structgridfire_1_1_q_s_e_cache_key.html":[7,0,0,27],
+"structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7":[5,0,0,28,7],
+"structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7":[7,0,0,27,7],
+"structgridfire_1_1_q_s_e_cache_key.html#a3078528fc69b8e687448d3108a216c03":[5,0,0,28,0],
+"structgridfire_1_1_q_s_e_cache_key.html#a3078528fc69b8e687448d3108a216c03":[7,0,0,27,0],
+"structgridfire_1_1_q_s_e_cache_key.html#a711acccecadd93495fd08c81838be2d8":[5,0,0,28,4],
+"structgridfire_1_1_q_s_e_cache_key.html#a711acccecadd93495fd08c81838be2d8":[7,0,0,27,4],
+"structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d":[5,0,0,28,2],
+"structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d":[7,0,0,27,2],
+"structgridfire_1_1_q_s_e_cache_key.html#ab860b40d4ccb3c16a962d96bc767ff05":[5,0,0,28,5],
+"structgridfire_1_1_q_s_e_cache_key.html#ab860b40d4ccb3c16a962d96bc767ff05":[7,0,0,27,5],
+"structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63":[5,0,0,28,6],
+"structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63":[7,0,0,27,6],
+"structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3":[5,0,0,28,1],
+"structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3":[7,0,0,27,1],
+"structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81":[5,0,0,28,3],
+"structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81":[7,0,0,27,3],
+"structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a":[5,0,0,28,8],
+"structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a":[7,0,0,27,8],
+"structgridfire_1_1_step_derivatives.html":[5,0,0,31],
+"structgridfire_1_1_step_derivatives.html":[7,0,0,30],
+"structgridfire_1_1_step_derivatives.html#a1ae99ac1684d8df519f8d6af413d2cb1":[5,0,0,31,1],
+"structgridfire_1_1_step_derivatives.html#a1ae99ac1684d8df519f8d6af413d2cb1":[7,0,0,30,1],
+"structgridfire_1_1_step_derivatives.html#a26deeb236e77eddb0119ad368a5d8f1c":[5,0,0,31,0],
+"structgridfire_1_1_step_derivatives.html#a26deeb236e77eddb0119ad368a5d8f1c":[7,0,0,30,0],
+"structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008":[5,0,0,31,2],
+"structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008":[7,0,0,30,2],
+"structgridfire_1_1approx8_1_1_approx8_net.html":[5,0,0,0,0],
+"structgridfire_1_1approx8_1_1_approx8_net.html":[7,0,0,0,0],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a010df59d40b3bc8a802224968922ebde":[5,0,0,0,0,11],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a010df59d40b3bc8a802224968922ebde":[7,0,0,0,0,11],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a18501627dceb5d084bc7ba19f119826f":[5,0,0,0,0,3],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a18501627dceb5d084bc7ba19f119826f":[7,0,0,0,0,3],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a1af9135867aa3786721b89dbfdc4aee0":[5,0,0,0,0,8],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a1af9135867aa3786721b89dbfdc4aee0":[7,0,0,0,0,8],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a296e54c1b22f0c5d4d07a13577c6e069":[5,0,0,0,0,0],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a296e54c1b22f0c5d4d07a13577c6e069":[7,0,0,0,0,0],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a31928b4041479da6515a90569322fc02":[5,0,0,0,0,13],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a31928b4041479da6515a90569322fc02":[7,0,0,0,0,13],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a562c2383f585d3e9984225584d61c037":[5,0,0,0,0,2],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a562c2383f585d3e9984225584d61c037":[7,0,0,0,0,2],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a7218aa9b3dbe7c6eca52119e115692db":[5,0,0,0,0,14],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a7218aa9b3dbe7c6eca52119e115692db":[7,0,0,0,0,14],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a82977ad3df7f620e80a6235b3fe64731":[5,0,0,0,0,6],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a82977ad3df7f620e80a6235b3fe64731":[7,0,0,0,0,6],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a928b7810cb2993d59d40aa73c2faef18":[5,0,0,0,0,12],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a928b7810cb2993d59d40aa73c2faef18":[7,0,0,0,0,12],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a95b9a07e29285884e6de523f8132f653":[5,0,0,0,0,1],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a95b9a07e29285884e6de523f8132f653":[7,0,0,0,0,1],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a9647205f52fb0fa21316be39c3a6d709":[5,0,0,0,0,7],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a9647205f52fb0fa21316be39c3a6d709":[7,0,0,0,0,7],
+"structgridfire_1_1approx8_1_1_approx8_net.html#ab0a43fee658efcaacfe7e6fb4870569b":[5,0,0,0,0,5],
+"structgridfire_1_1approx8_1_1_approx8_net.html#ab0a43fee658efcaacfe7e6fb4870569b":[7,0,0,0,0,5],
+"structgridfire_1_1approx8_1_1_approx8_net.html#ab4e95622dc0414ad7e636ef811e600af":[5,0,0,0,0,10],
+"structgridfire_1_1approx8_1_1_approx8_net.html#ab4e95622dc0414ad7e636ef811e600af":[7,0,0,0,0,10],
+"structgridfire_1_1approx8_1_1_approx8_net.html#acc735a17e005f7e25c68a86d9735ec4c":[5,0,0,0,0,4],
+"structgridfire_1_1approx8_1_1_approx8_net.html#acc735a17e005f7e25c68a86d9735ec4c":[7,0,0,0,0,4],
+"structgridfire_1_1approx8_1_1_approx8_net.html#ad43418fd8c536ebc814d5e6de555256c":[5,0,0,0,0,9],
+"structgridfire_1_1approx8_1_1_approx8_net.html#ad43418fd8c536ebc814d5e6de555256c":[7,0,0,0,0,9],
+"structgridfire_1_1approx8_1_1_jacobian.html":[5,0,0,0,2],
+"structgridfire_1_1approx8_1_1_jacobian.html":[7,0,0,0,2],
+"structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa":[5,0,0,0,2,0],
+"structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa":[7,0,0,0,2,0],
+"structgridfire_1_1approx8_1_1_o_d_e.html":[5,0,0,0,3],
+"structgridfire_1_1approx8_1_1_o_d_e.html":[7,0,0,0,3],
+"structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0":[5,0,0,0,3,0],
+"structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0":[7,0,0,0,3,0],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html":[5,0,0,2,4,0],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html":[7,0,0,1,4,0],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a24207163a7ea2dde675b458f9df37a99":[5,0,0,2,4,0,0],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a24207163a7ea2dde675b458f9df37a99":[7,0,0,1,4,0,0],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a352cd33629e63286808df617d36cb70b":[5,0,0,2,4,0,2],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a352cd33629e63286808df617d36cb70b":[7,0,0,1,4,0,2],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963":[5,0,0,2,4,0,3],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963":[7,0,0,1,4,0,3],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf":[5,0,0,2,4,0,5],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf":[7,0,0,1,4,0,5],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44":[5,0,0,2,4,0,1],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44":[7,0,0,1,4,0,1],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#ac1cddf0f2955d4282afcf4a90a2de9c0":[5,0,0,2,4,0,4],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#ac1cddf0f2955d4282afcf4a90a2de9c0":[7,0,0,1,4,0,4],
+"structgridfire_1_1expectations_1_1_engine_error.html":[5,0,0,3,0],
+"structgridfire_1_1expectations_1_1_engine_error.html":[7,0,0,2,0],
+"structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897":[5,0,0,3,0,1],
+"structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897":[7,0,0,2,0,1],
+"structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7":[5,0,0,3,0,2],
+"structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7":[7,0,0,2,0,2],
+"structgridfire_1_1expectations_1_1_engine_error.html#a574a18b105ee285f516db535e1e3bdfd":[5,0,0,3,0,0],
+"structgridfire_1_1expectations_1_1_engine_error.html#a574a18b105ee285f516db535e1e3bdfd":[7,0,0,2,0,0],
+"structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897":[5,0,0,3,0,4],
+"structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897":[7,0,0,2,0,4],
+"structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc":[5,0,0,3,0,3],
+"structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc":[7,0,0,2,0,3],
+"structgridfire_1_1expectations_1_1_engine_index_error.html":[5,0,0,3,1],
+"structgridfire_1_1expectations_1_1_engine_index_error.html":[7,0,0,2,1],
+"structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e":[5,0,0,3,1,2],
+"structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e":[7,0,0,2,1,2],
+"structgridfire_1_1expectations_1_1_engine_index_error.html#ab44bba2a197d43319e65cd200cd347b0":[5,0,0,3,1,0],
+"structgridfire_1_1expectations_1_1_engine_index_error.html#ab44bba2a197d43319e65cd200cd347b0":[7,0,0,2,1,0],
+"structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903":[5,0,0,3,1,1],
+"structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903":[7,0,0,2,1,1],
+"structgridfire_1_1expectations_1_1_stale_engine_error.html":[5,0,0,3,2],
+"structgridfire_1_1expectations_1_1_stale_engine_error.html":[7,0,0,2,2],
+"structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590":[5,0,0,3,2,2],
+"structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590":[7,0,0,2,2,2],
+"structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10":[5,0,0,3,2,0],
+"structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10":[7,0,0,2,2,0],
+"structgridfire_1_1expectations_1_1_stale_engine_error.html#ad8ba0f62a2da0d93aba429181e7e6f84":[5,0,0,3,2,1],
+"structgridfire_1_1expectations_1_1_stale_engine_error.html#ad8ba0f62a2da0d93aba429181e7e6f84":[7,0,0,2,2,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html":[5,0,0,5,4,0],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html":[7,0,0,4,4,0],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a2da59e4f6e2ba3eff581bacabbf387de":[5,0,0,5,4,0,2],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a2da59e4f6e2ba3eff581bacabbf387de":[7,0,0,4,4,0,2],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a5f673ab0425f06f3639cc9b5200ee3af":[5,0,0,5,4,0,0],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a5f673ab0425f06f3639cc9b5200ee3af":[7,0,0,4,4,0,0],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070":[5,0,0,5,4,0,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070":[7,0,0,4,4,0,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#aa99e1fa2fd4937592c066b0df16f377f":[5,0,0,5,4,0,3],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#aa99e1fa2fd4937592c066b0df16f377f":[7,0,0,4,4,0,3],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html":[5,0,0,5,4,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html":[7,0,0,4,4,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a3cb7ee6f3031997aab99c5502b61d90e":[5,0,0,5,4,1,0],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a3cb7ee6f3031997aab99c5502b61d90e":[7,0,0,4,4,1,0],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a48e170f77812fdbc06cff18267b241ca":[5,0,0,5,4,1,3],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a48e170f77812fdbc06cff18267b241ca":[7,0,0,4,4,1,3],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a750aa8cd8aa8b8da6d1f0db1cc66233d":[5,0,0,5,4,1,2],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a750aa8cd8aa8b8da6d1f0db1cc66233d":[7,0,0,4,4,1,2],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a7d291ba80f958fe34ae72b21c6fab380":[5,0,0,5,4,1,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a7d291ba80f958fe34ae72b21c6fab380":[7,0,0,4,4,1,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html":[5,0,0,5,4,2],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html":[7,0,0,4,4,2],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aea71e9198606e0ba393321178f988fcc":[5,0,0,5,4,2,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aea71e9198606e0ba393321178f988fcc":[7,0,0,4,4,2,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aec714697f3f5102124561252233fc350":[5,0,0,5,4,2,0],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aec714697f3f5102124561252233fc350":[7,0,0,4,4,2,0],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html":[5,0,0,5,0,0],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html":[7,0,0,4,0,0],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a64c1cef58c1bdeab1fcc7f9a30a71609":[5,0,0,5,0,0,2],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a64c1cef58c1bdeab1fcc7f9a30a71609":[7,0,0,4,0,0,2],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a677505655a1c6922dfa9b32b70d7e815":[5,0,0,5,0,0,0],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a677505655a1c6922dfa9b32b70d7e815":[7,0,0,4,0,0,0],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#abb1416e2d8d4d27264c9eece547006b6":[5,0,0,5,0,0,3],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#abb1416e2d8d4d27264c9eece547006b6":[7,0,0,4,0,0,3]
+};
diff --git a/docs/html/network_8cpp.html b/docs/html/network_8cpp.html
index 8f684fc2..690c4929 100644
--- a/docs/html/network_8cpp.html
+++ b/docs/html/network_8cpp.html
@@ -106,7 +106,6 @@ $(function(){initNavTree('network_8cpp.html',''); initResizable(true); });
 </div><!--header-->
 <div class="contents">
 <div class="textblock"><code>#include &quot;<a class="el" href="network_8h.html">gridfire/network.h</a>&quot;</code><br />
-<code>#include &quot;<a class="el" href="reaclib_8h.html">gridfire/reaction/reaclib.h</a>&quot;</code><br />
 <code>#include &quot;<a class="el" href="reaction_8h.html">gridfire/reaction/reaction.h</a>&quot;</code><br />
 <code>#include &lt;ranges&gt;</code><br />
 <code>#include &quot;quill/LogMacros.h&quot;</code><br />
diff --git a/docs/html/network_8h.html b/docs/html/network_8h.html
index ca390ed7..fc512c24 100644
--- a/docs/html/network_8h.html
+++ b/docs/html/network_8h.html
@@ -113,7 +113,6 @@ $(function(){initNavTree('network_8h.html',''); initResizable(true); });
 <code>#include &quot;fourdst/composition/species.h&quot;</code><br />
 <code>#include &quot;fourdst/composition/composition.h&quot;</code><br />
 <code>#include &quot;fourdst/constants/const.h&quot;</code><br />
-<code>#include &quot;<a class="el" href="reaction_8h.html">gridfire/reaction/reaction.h</a>&quot;</code><br />
 <code>#include &quot;quill/Logger.h&quot;</code><br />
 <code>#include &lt;unordered_map&gt;</code><br />
 </div><table class="memberdecls">
diff --git a/docs/html/partition_2bindings_8cpp.html b/docs/html/partition_2bindings_8cpp.html
index 0ab6415a..78daf90d 100644
--- a/docs/html/partition_2bindings_8cpp.html
+++ b/docs/html/partition_2bindings_8cpp.html
@@ -119,18 +119,18 @@ Functions</h2></td></tr>
 <tr class="separator:a2806baaec82e0e6d66b80348584e08fd"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a4c0db94b56a3b02482ac4fd654680cca" id="r_a4c0db94b56a3b02482ac4fd654680cca"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4c0db94b56a3b02482ac4fd654680cca">register_partition_types_bindings</a> (pybind11::module &amp;m)</td></tr>
 <tr class="separator:a4c0db94b56a3b02482ac4fd654680cca"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac36d0a5e8cb0122888fd218a143c7630" id="r_ac36d0a5e8cb0122888fd218a143c7630"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac36d0a5e8cb0122888fd218a143c7630">register_ground_state_partition_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:ac36d0a5e8cb0122888fd218a143c7630"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae405682b0e35624397583048f4d40f75" id="r_ae405682b0e35624397583048f4d40f75"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae405682b0e35624397583048f4d40f75">register_rauscher_thielemann_partition_data_record_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:ae405682b0e35624397583048f4d40f75"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4e56b30b36165067cf413787a55b9ecb" id="r_a4e56b30b36165067cf413787a55b9ecb"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4e56b30b36165067cf413787a55b9ecb">register_rauscher_thielemann_partition_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:a4e56b30b36165067cf413787a55b9ecb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afded1a99d32cbf8745a42e0a81891e18" id="r_afded1a99d32cbf8745a42e0a81891e18"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afded1a99d32cbf8745a42e0a81891e18">register_composite_partition_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:afded1a99d32cbf8745a42e0a81891e18"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac0a1def5c77c5554187c9d4f26fce77e" id="r_ac0a1def5c77c5554187c9d4f26fce77e"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac0a1def5c77c5554187c9d4f26fce77e">register_ground_state_partition_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:ac0a1def5c77c5554187c9d4f26fce77e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a294e2893e79c41c10f914467d4858c1a" id="r_a294e2893e79c41c10f914467d4858c1a"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a294e2893e79c41c10f914467d4858c1a">register_rauscher_thielemann_partition_data_record_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:a294e2893e79c41c10f914467d4858c1a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae1665331725ff38c39d7d3eec551ec97" id="r_ae1665331725ff38c39d7d3eec551ec97"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae1665331725ff38c39d7d3eec551ec97">register_rauscher_thielemann_partition_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:ae1665331725ff38c39d7d3eec551ec97"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9d0d58ff2233e31a4ad88cc418b5ca64" id="r_a9d0d58ff2233e31a4ad88cc418b5ca64"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9d0d58ff2233e31a4ad88cc418b5ca64">register_composite_partition_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:a9d0d58ff2233e31a4ad88cc418b5ca64"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Function Documentation</h2>
-<a id="afded1a99d32cbf8745a42e0a81891e18" name="afded1a99d32cbf8745a42e0a81891e18"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afded1a99d32cbf8745a42e0a81891e18">&#9670;&#160;</a></span>register_composite_partition_bindings()</h2>
+<a id="a9d0d58ff2233e31a4ad88cc418b5ca64" name="a9d0d58ff2233e31a4ad88cc418b5ca64"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9d0d58ff2233e31a4ad88cc418b5ca64">&#9670;&#160;</a></span>register_composite_partition_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -138,7 +138,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_composite_partition_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -146,8 +146,8 @@ Functions</h2></td></tr>
 
 </div>
 </div>
-<a id="ac36d0a5e8cb0122888fd218a143c7630" name="ac36d0a5e8cb0122888fd218a143c7630"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac36d0a5e8cb0122888fd218a143c7630">&#9670;&#160;</a></span>register_ground_state_partition_bindings()</h2>
+<a id="ac0a1def5c77c5554187c9d4f26fce77e" name="ac0a1def5c77c5554187c9d4f26fce77e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac0a1def5c77c5554187c9d4f26fce77e">&#9670;&#160;</a></span>register_ground_state_partition_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -155,7 +155,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_ground_state_partition_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -197,8 +197,8 @@ Functions</h2></td></tr>
 
 </div>
 </div>
-<a id="a4e56b30b36165067cf413787a55b9ecb" name="a4e56b30b36165067cf413787a55b9ecb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4e56b30b36165067cf413787a55b9ecb">&#9670;&#160;</a></span>register_rauscher_thielemann_partition_bindings()</h2>
+<a id="ae1665331725ff38c39d7d3eec551ec97" name="ae1665331725ff38c39d7d3eec551ec97"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae1665331725ff38c39d7d3eec551ec97">&#9670;&#160;</a></span>register_rauscher_thielemann_partition_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -206,7 +206,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_rauscher_thielemann_partition_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -214,8 +214,8 @@ Functions</h2></td></tr>
 
 </div>
 </div>
-<a id="ae405682b0e35624397583048f4d40f75" name="ae405682b0e35624397583048f4d40f75"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae405682b0e35624397583048f4d40f75">&#9670;&#160;</a></span>register_rauscher_thielemann_partition_data_record_bindings()</h2>
+<a id="a294e2893e79c41c10f914467d4858c1a" name="a294e2893e79c41c10f914467d4858c1a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a294e2893e79c41c10f914467d4858c1a">&#9670;&#160;</a></span>register_rauscher_thielemann_partition_data_record_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -223,7 +223,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_rauscher_thielemann_partition_data_record_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
diff --git a/docs/html/partition_2bindings_8cpp.js b/docs/html/partition_2bindings_8cpp.js
index 885e1912..38ef13d7 100644
--- a/docs/html/partition_2bindings_8cpp.js
+++ b/docs/html/partition_2bindings_8cpp.js
@@ -1,9 +1,9 @@
 var partition_2bindings_8cpp =
 [
-    [ "register_composite_partition_bindings", "partition_2bindings_8cpp.html#afded1a99d32cbf8745a42e0a81891e18", null ],
-    [ "register_ground_state_partition_bindings", "partition_2bindings_8cpp.html#ac36d0a5e8cb0122888fd218a143c7630", null ],
+    [ "register_composite_partition_bindings", "partition_2bindings_8cpp.html#a9d0d58ff2233e31a4ad88cc418b5ca64", null ],
+    [ "register_ground_state_partition_bindings", "partition_2bindings_8cpp.html#ac0a1def5c77c5554187c9d4f26fce77e", null ],
     [ "register_partition_bindings", "partition_2bindings_8cpp.html#a2806baaec82e0e6d66b80348584e08fd", null ],
     [ "register_partition_types_bindings", "partition_2bindings_8cpp.html#a4c0db94b56a3b02482ac4fd654680cca", null ],
-    [ "register_rauscher_thielemann_partition_bindings", "partition_2bindings_8cpp.html#a4e56b30b36165067cf413787a55b9ecb", null ],
-    [ "register_rauscher_thielemann_partition_data_record_bindings", "partition_2bindings_8cpp.html#ae405682b0e35624397583048f4d40f75", null ]
+    [ "register_rauscher_thielemann_partition_bindings", "partition_2bindings_8cpp.html#ae1665331725ff38c39d7d3eec551ec97", null ],
+    [ "register_rauscher_thielemann_partition_data_record_bindings", "partition_2bindings_8cpp.html#a294e2893e79c41c10f914467d4858c1a", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/partition_2bindings_8h.html b/docs/html/partition_2bindings_8h.html
index a118108f..e5657e5d 100644
--- a/docs/html/partition_2bindings_8h.html
+++ b/docs/html/partition_2bindings_8h.html
@@ -112,18 +112,18 @@ Functions</h2></td></tr>
 <tr class="separator:a2806baaec82e0e6d66b80348584e08fd"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a4c0db94b56a3b02482ac4fd654680cca" id="r_a4c0db94b56a3b02482ac4fd654680cca"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4c0db94b56a3b02482ac4fd654680cca">register_partition_types_bindings</a> (pybind11::module &amp;m)</td></tr>
 <tr class="separator:a4c0db94b56a3b02482ac4fd654680cca"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac36d0a5e8cb0122888fd218a143c7630" id="r_ac36d0a5e8cb0122888fd218a143c7630"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac36d0a5e8cb0122888fd218a143c7630">register_ground_state_partition_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:ac36d0a5e8cb0122888fd218a143c7630"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae405682b0e35624397583048f4d40f75" id="r_ae405682b0e35624397583048f4d40f75"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae405682b0e35624397583048f4d40f75">register_rauscher_thielemann_partition_data_record_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:ae405682b0e35624397583048f4d40f75"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4e56b30b36165067cf413787a55b9ecb" id="r_a4e56b30b36165067cf413787a55b9ecb"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4e56b30b36165067cf413787a55b9ecb">register_rauscher_thielemann_partition_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:a4e56b30b36165067cf413787a55b9ecb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afded1a99d32cbf8745a42e0a81891e18" id="r_afded1a99d32cbf8745a42e0a81891e18"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afded1a99d32cbf8745a42e0a81891e18">register_composite_partition_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:afded1a99d32cbf8745a42e0a81891e18"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac0a1def5c77c5554187c9d4f26fce77e" id="r_ac0a1def5c77c5554187c9d4f26fce77e"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac0a1def5c77c5554187c9d4f26fce77e">register_ground_state_partition_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:ac0a1def5c77c5554187c9d4f26fce77e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a294e2893e79c41c10f914467d4858c1a" id="r_a294e2893e79c41c10f914467d4858c1a"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a294e2893e79c41c10f914467d4858c1a">register_rauscher_thielemann_partition_data_record_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:a294e2893e79c41c10f914467d4858c1a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae1665331725ff38c39d7d3eec551ec97" id="r_ae1665331725ff38c39d7d3eec551ec97"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae1665331725ff38c39d7d3eec551ec97">register_rauscher_thielemann_partition_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:ae1665331725ff38c39d7d3eec551ec97"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9d0d58ff2233e31a4ad88cc418b5ca64" id="r_a9d0d58ff2233e31a4ad88cc418b5ca64"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9d0d58ff2233e31a4ad88cc418b5ca64">register_composite_partition_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:a9d0d58ff2233e31a4ad88cc418b5ca64"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Function Documentation</h2>
-<a id="afded1a99d32cbf8745a42e0a81891e18" name="afded1a99d32cbf8745a42e0a81891e18"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afded1a99d32cbf8745a42e0a81891e18">&#9670;&#160;</a></span>register_composite_partition_bindings()</h2>
+<a id="a9d0d58ff2233e31a4ad88cc418b5ca64" name="a9d0d58ff2233e31a4ad88cc418b5ca64"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9d0d58ff2233e31a4ad88cc418b5ca64">&#9670;&#160;</a></span>register_composite_partition_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -131,7 +131,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_composite_partition_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -139,8 +139,8 @@ Functions</h2></td></tr>
 
 </div>
 </div>
-<a id="ac36d0a5e8cb0122888fd218a143c7630" name="ac36d0a5e8cb0122888fd218a143c7630"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac36d0a5e8cb0122888fd218a143c7630">&#9670;&#160;</a></span>register_ground_state_partition_bindings()</h2>
+<a id="ac0a1def5c77c5554187c9d4f26fce77e" name="ac0a1def5c77c5554187c9d4f26fce77e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac0a1def5c77c5554187c9d4f26fce77e">&#9670;&#160;</a></span>register_ground_state_partition_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -148,7 +148,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_ground_state_partition_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -190,8 +190,8 @@ Functions</h2></td></tr>
 
 </div>
 </div>
-<a id="a4e56b30b36165067cf413787a55b9ecb" name="a4e56b30b36165067cf413787a55b9ecb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4e56b30b36165067cf413787a55b9ecb">&#9670;&#160;</a></span>register_rauscher_thielemann_partition_bindings()</h2>
+<a id="ae1665331725ff38c39d7d3eec551ec97" name="ae1665331725ff38c39d7d3eec551ec97"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae1665331725ff38c39d7d3eec551ec97">&#9670;&#160;</a></span>register_rauscher_thielemann_partition_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -199,7 +199,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_rauscher_thielemann_partition_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -207,8 +207,8 @@ Functions</h2></td></tr>
 
 </div>
 </div>
-<a id="ae405682b0e35624397583048f4d40f75" name="ae405682b0e35624397583048f4d40f75"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae405682b0e35624397583048f4d40f75">&#9670;&#160;</a></span>register_rauscher_thielemann_partition_data_record_bindings()</h2>
+<a id="a294e2893e79c41c10f914467d4858c1a" name="a294e2893e79c41c10f914467d4858c1a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a294e2893e79c41c10f914467d4858c1a">&#9670;&#160;</a></span>register_rauscher_thielemann_partition_data_record_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -216,7 +216,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_rauscher_thielemann_partition_data_record_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
diff --git a/docs/html/partition_2bindings_8h.js b/docs/html/partition_2bindings_8h.js
index d5c33b58..389d02cc 100644
--- a/docs/html/partition_2bindings_8h.js
+++ b/docs/html/partition_2bindings_8h.js
@@ -1,9 +1,9 @@
 var partition_2bindings_8h =
 [
-    [ "register_composite_partition_bindings", "partition_2bindings_8h.html#afded1a99d32cbf8745a42e0a81891e18", null ],
-    [ "register_ground_state_partition_bindings", "partition_2bindings_8h.html#ac36d0a5e8cb0122888fd218a143c7630", null ],
+    [ "register_composite_partition_bindings", "partition_2bindings_8h.html#a9d0d58ff2233e31a4ad88cc418b5ca64", null ],
+    [ "register_ground_state_partition_bindings", "partition_2bindings_8h.html#ac0a1def5c77c5554187c9d4f26fce77e", null ],
     [ "register_partition_bindings", "partition_2bindings_8h.html#a2806baaec82e0e6d66b80348584e08fd", null ],
     [ "register_partition_types_bindings", "partition_2bindings_8h.html#a4c0db94b56a3b02482ac4fd654680cca", null ],
-    [ "register_rauscher_thielemann_partition_bindings", "partition_2bindings_8h.html#a4e56b30b36165067cf413787a55b9ecb", null ],
-    [ "register_rauscher_thielemann_partition_data_record_bindings", "partition_2bindings_8h.html#ae405682b0e35624397583048f4d40f75", null ]
+    [ "register_rauscher_thielemann_partition_bindings", "partition_2bindings_8h.html#ae1665331725ff38c39d7d3eec551ec97", null ],
+    [ "register_rauscher_thielemann_partition_data_record_bindings", "partition_2bindings_8h.html#a294e2893e79c41c10f914467d4858c1a", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/partition__ground_8cpp.html b/docs/html/partition__ground_8cpp.html
index f6259a6b..86d5051c 100644
--- a/docs/html/partition__ground_8cpp.html
+++ b/docs/html/partition__ground_8cpp.html
@@ -106,7 +106,6 @@ $(function(){initNavTree('partition__ground_8cpp.html',''); initResizable(true);
 <div class="contents">
 <div class="textblock"><code>#include &quot;<a class="el" href="partition__ground_8h.html">gridfire/partition/partition_ground.h</a>&quot;</code><br />
 <code>#include &lt;ranges&gt;</code><br />
-<code>#include &quot;fourdst/logging/logging.h&quot;</code><br />
 <code>#include &quot;fourdst/composition/atomicSpecies.h&quot;</code><br />
 <code>#include &quot;fourdst/composition/species.h&quot;</code><br />
 <code>#include &quot;quill/LogMacros.h&quot;</code><br />
diff --git a/docs/html/partition__rauscher__thielemann_8cpp.html b/docs/html/partition__rauscher__thielemann_8cpp.html
index 98912c98..075fd6b9 100644
--- a/docs/html/partition__rauscher__thielemann_8cpp.html
+++ b/docs/html/partition__rauscher__thielemann_8cpp.html
@@ -112,7 +112,6 @@ $(function(){initNavTree('partition__rauscher__thielemann_8cpp.html',''); initRe
 <code>#include &quot;quill/LogMacros.h&quot;</code><br />
 <code>#include &lt;stdexcept&gt;</code><br />
 <code>#include &lt;algorithm&gt;</code><br />
-<code>#include &lt;vector&gt;</code><br />
 <code>#include &lt;array&gt;</code><br />
 <code>#include &lt;iostream&gt;</code><br />
 </div><table class="memberdecls">
diff --git a/docs/html/partition__rauscher__thielemann_8h.html b/docs/html/partition__rauscher__thielemann_8h.html
index 213131b8..ab668f05 100644
--- a/docs/html/partition__rauscher__thielemann_8h.html
+++ b/docs/html/partition__rauscher__thielemann_8h.html
@@ -108,10 +108,8 @@ $(function(){initNavTree('partition__rauscher__thielemann_8h.html',''); initResi
 <div class="textblock"><code>#include &quot;<a class="el" href="partition__abstract_8h.html">gridfire/partition/partition_abstract.h</a>&quot;</code><br />
 <code>#include &quot;fourdst/logging/logging.h&quot;</code><br />
 <code>#include &lt;string&gt;</code><br />
-<code>#include &lt;vector&gt;</code><br />
 <code>#include &lt;unordered_map&gt;</code><br />
 <code>#include &lt;array&gt;</code><br />
-<code>#include &lt;utility&gt;</code><br />
 <code>#include &lt;memory&gt;</code><br />
 </div><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
diff --git a/docs/html/priming_8cpp.html b/docs/html/priming_8cpp.html
index da7b72e4..9ee843ee 100644
--- a/docs/html/priming_8cpp.html
+++ b/docs/html/priming_8cpp.html
@@ -122,17 +122,15 @@ Namespaces</h2></td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:aefc63ddbfe97dcb4178c94dfd1c4b256" id="r_aefc63ddbfe97dcb4178c94dfd1c4b256"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#aefc63ddbfe97dcb4178c94dfd1c4b256">gridfire::findDominantCreationChannel</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const Species &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho)</td></tr>
-<tr class="separator:aefc63ddbfe97dcb4178c94dfd1c4b256"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acd0bfdfbce4e84af102d62ff8a797c9f" id="r_acd0bfdfbce4e84af102d62ff8a797c9f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_priming_report.html">PrimingReport</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f">gridfire::primeNetwork</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;, <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine)</td></tr>
-<tr class="memdesc:acd0bfdfbce4e84af102d62ff8a797c9f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Primes absent species in the network to their equilibrium abundances.  <br /></td></tr>
-<tr class="separator:acd0bfdfbce4e84af102d62ff8a797c9f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8f26d5f5fabb42e88261e42bc060cea2" id="r_a8f26d5f5fabb42e88261e42bc060cea2"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2">gridfire::calculateDestructionRateConstant</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const fourdst::atomic::Species &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho)</td></tr>
-<tr class="memdesc:a8f26d5f5fabb42e88261e42bc060cea2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes the destruction rate constant for a specific species.  <br /></td></tr>
-<tr class="separator:a8f26d5f5fabb42e88261e42bc060cea2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7c4b6104d5dfc5afddda36f726c5d07d" id="r_a7c4b6104d5dfc5afddda36f726c5d07d"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d">gridfire::calculateCreationRate</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const fourdst::atomic::Species &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho)</td></tr>
-<tr class="memdesc:a7c4b6104d5dfc5afddda36f726c5d07d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes the creation rate for a specific species.  <br /></td></tr>
-<tr class="separator:a7c4b6104d5dfc5afddda36f726c5d07d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f" id="r_a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f">gridfire::findDominantCreationChannel</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const Species &amp;species, const fourdst::composition::Composition &amp;comp, const double T9, const double rho)</td></tr>
+<tr class="separator:a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3cd451f4b7a7bc7c2d7007ebb343e9ac" id="r_a3cd451f4b7a7bc7c2d7007ebb343e9ac"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_priming_report.html">PrimingReport</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#a3cd451f4b7a7bc7c2d7007ebb343e9ac">gridfire::primeNetwork</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn, <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine)</td></tr>
+<tr class="memdesc:a3cd451f4b7a7bc7c2d7007ebb343e9ac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Primes absent species in the network to their equilibrium abundances.  <br /></td></tr>
+<tr class="separator:a3cd451f4b7a7bc7c2d7007ebb343e9ac"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a023dc09e48b62e3f93f9a8b70cb2c63f" id="r_a023dc09e48b62e3f93f9a8b70cb2c63f"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#a023dc09e48b62e3f93f9a8b70cb2c63f">gridfire::calculateDestructionRateConstant</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const Species &amp;species, const Composition &amp;comp, const double T9, const double rho)</td></tr>
+<tr class="separator:a023dc09e48b62e3f93f9a8b70cb2c63f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a553717597efebcea94232a4a1d80e31d" id="r_a553717597efebcea94232a4a1d80e31d"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#a553717597efebcea94232a4a1d80e31d">gridfire::calculateCreationRate</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const Species &amp;species, const Composition &amp;comp, const double T9, const double rho)</td></tr>
+<tr class="separator:a553717597efebcea94232a4a1d80e31d"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/priming_8cpp.js b/docs/html/priming_8cpp.js
index 9b0a1b94..6f4c16ad 100644
--- a/docs/html/priming_8cpp.js
+++ b/docs/html/priming_8cpp.js
@@ -1,7 +1,7 @@
 var priming_8cpp =
 [
-    [ "gridfire::calculateCreationRate", "namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d", null ],
-    [ "gridfire::calculateDestructionRateConstant", "namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2", null ],
-    [ "gridfire::findDominantCreationChannel", "namespacegridfire.html#aefc63ddbfe97dcb4178c94dfd1c4b256", null ],
-    [ "gridfire::primeNetwork", "namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f", null ]
+    [ "gridfire::calculateCreationRate", "namespacegridfire.html#a553717597efebcea94232a4a1d80e31d", null ],
+    [ "gridfire::calculateDestructionRateConstant", "namespacegridfire.html#a023dc09e48b62e3f93f9a8b70cb2c63f", null ],
+    [ "gridfire::findDominantCreationChannel", "namespacegridfire.html#a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f", null ],
+    [ "gridfire::primeNetwork", "namespacegridfire.html#a3cd451f4b7a7bc7c2d7007ebb343e9ac", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/priming_8h.html b/docs/html/priming_8h.html
index 58fea0c5..42647bf7 100644
--- a/docs/html/priming_8h.html
+++ b/docs/html/priming_8h.html
@@ -107,11 +107,7 @@ $(function(){initNavTree('priming_8h.html',''); initResizable(true); });
 <div class="contents">
 <div class="textblock"><code>#include &quot;<a class="el" href="engine__abstract_8h.html">gridfire/engine/engine_abstract.h</a>&quot;</code><br />
 <code>#include &quot;<a class="el" href="network_8h.html">gridfire/network.h</a>&quot;</code><br />
-<code>#include &quot;fourdst/composition/composition.h&quot;</code><br />
 <code>#include &quot;fourdst/composition/atomicSpecies.h&quot;</code><br />
-<code>#include &lt;map&gt;</code><br />
-<code>#include &lt;ranges&gt;</code><br />
-<code>#include &lt;sstream&gt;</code><br />
 </div><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
 Namespaces</h2></td></tr>
@@ -120,15 +116,15 @@ Namespaces</h2></td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:acd0bfdfbce4e84af102d62ff8a797c9f" id="r_acd0bfdfbce4e84af102d62ff8a797c9f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_priming_report.html">PrimingReport</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f">gridfire::primeNetwork</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;, <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine)</td></tr>
-<tr class="memdesc:acd0bfdfbce4e84af102d62ff8a797c9f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Primes absent species in the network to their equilibrium abundances.  <br /></td></tr>
-<tr class="separator:acd0bfdfbce4e84af102d62ff8a797c9f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8f26d5f5fabb42e88261e42bc060cea2" id="r_a8f26d5f5fabb42e88261e42bc060cea2"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2">gridfire::calculateDestructionRateConstant</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const fourdst::atomic::Species &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho)</td></tr>
-<tr class="memdesc:a8f26d5f5fabb42e88261e42bc060cea2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes the destruction rate constant for a specific species.  <br /></td></tr>
-<tr class="separator:a8f26d5f5fabb42e88261e42bc060cea2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7c4b6104d5dfc5afddda36f726c5d07d" id="r_a7c4b6104d5dfc5afddda36f726c5d07d"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d">gridfire::calculateCreationRate</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const fourdst::atomic::Species &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho)</td></tr>
-<tr class="memdesc:a7c4b6104d5dfc5afddda36f726c5d07d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes the creation rate for a specific species.  <br /></td></tr>
-<tr class="separator:a7c4b6104d5dfc5afddda36f726c5d07d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3cd451f4b7a7bc7c2d7007ebb343e9ac" id="r_a3cd451f4b7a7bc7c2d7007ebb343e9ac"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1_priming_report.html">PrimingReport</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#a3cd451f4b7a7bc7c2d7007ebb343e9ac">gridfire::primeNetwork</a> (const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;netIn, <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine)</td></tr>
+<tr class="memdesc:a3cd451f4b7a7bc7c2d7007ebb343e9ac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Primes absent species in the network to their equilibrium abundances.  <br /></td></tr>
+<tr class="separator:a3cd451f4b7a7bc7c2d7007ebb343e9ac"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab6e14208fad69f4031411a9346c12397" id="r_ab6e14208fad69f4031411a9346c12397"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#ab6e14208fad69f4031411a9346c12397">gridfire::calculateDestructionRateConstant</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const fourdst::atomic::Species &amp;species, const fourdst::composition::Composition &amp;composition, double T9, double rho)</td></tr>
+<tr class="memdesc:ab6e14208fad69f4031411a9346c12397"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes the destruction rate constant for a specific species.  <br /></td></tr>
+<tr class="separator:ab6e14208fad69f4031411a9346c12397"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8995b949592d59850e45a3fd27306369" id="r_a8995b949592d59850e45a3fd27306369"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html#a8995b949592d59850e45a3fd27306369">gridfire::calculateCreationRate</a> (const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const fourdst::atomic::Species &amp;species, const fourdst::composition::Composition &amp;composition, double T9, double rho)</td></tr>
+<tr class="memdesc:a8995b949592d59850e45a3fd27306369"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes the creation rate for a specific species.  <br /></td></tr>
+<tr class="separator:a8995b949592d59850e45a3fd27306369"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/priming_8h.js b/docs/html/priming_8h.js
index 83e0d457..b597ded0 100644
--- a/docs/html/priming_8h.js
+++ b/docs/html/priming_8h.js
@@ -1,6 +1,6 @@
 var priming_8h =
 [
-    [ "gridfire::calculateCreationRate", "namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d", null ],
-    [ "gridfire::calculateDestructionRateConstant", "namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2", null ],
-    [ "gridfire::primeNetwork", "namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f", null ]
+    [ "gridfire::calculateCreationRate", "namespacegridfire.html#a8995b949592d59850e45a3fd27306369", null ],
+    [ "gridfire::calculateDestructionRateConstant", "namespacegridfire.html#ab6e14208fad69f4031411a9346c12397", null ],
+    [ "gridfire::primeNetwork", "namespacegridfire.html#a3cd451f4b7a7bc7c2d7007ebb343e9ac", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/py__screening_8h.html b/docs/html/py__screening_8h.html
index e196b14c..a883feaa 100644
--- a/docs/html/py__screening_8h.html
+++ b/docs/html/py__screening_8h.html
@@ -105,9 +105,6 @@ $(function(){initNavTree('py__screening_8h.html',''); initResizable(true); });
 </div><!--header-->
 <div class="contents">
 <div class="textblock"><code>#include &quot;<a class="el" href="screening_8h.html">gridfire/screening/screening.h</a>&quot;</code><br />
-<code>#include &lt;pybind11/pybind11.h&gt;</code><br />
-<code>#include &lt;pybind11/stl.h&gt;</code><br />
-<code>#include &lt;pybind11/functional.h&gt;</code><br />
 <code>#include &lt;vector&gt;</code><br />
 <code>#include &quot;cppad/cppad.hpp&quot;</code><br />
 </div><table class="memberdecls">
diff --git a/docs/html/py__solver_8cpp.html b/docs/html/py__solver_8cpp.html
index 4f2a7345..53b78bab 100644
--- a/docs/html/py__solver_8cpp.html
+++ b/docs/html/py__solver_8cpp.html
@@ -105,7 +105,6 @@ $(function(){initNavTree('py__solver_8cpp.html',''); initResizable(true); });
 <div class="textblock"><code>#include &quot;<a class="el" href="solver_8h.html">gridfire/solver/solver.h</a>&quot;</code><br />
 <code>#include &lt;pybind11/pybind11.h&gt;</code><br />
 <code>#include &lt;pybind11/stl.h&gt;</code><br />
-<code>#include &lt;pybind11/functional.h&gt;</code><br />
 <code>#include &lt;vector&gt;</code><br />
 <code>#include &lt;tuple&gt;</code><br />
 <code>#include &lt;string&gt;</code><br />
diff --git a/docs/html/reaclib_8cpp.html b/docs/html/reaclib_8cpp.html
index 9c905d54..fa48af58 100644
--- a/docs/html/reaclib_8cpp.html
+++ b/docs/html/reaclib_8cpp.html
@@ -139,14 +139,14 @@ Functions</h2></td></tr>
 <tr class="separator:afc0deac6cbef076e8884e66fd3ab66e0"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a02ff11b88be94392151873e06a30b276" id="r_a02ff11b88be94392151873e06a30b276"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaclib.html#a02ff11b88be94392151873e06a30b276">gridfire::reaclib::initializeAllReaclibReactions</a> ()</td></tr>
 <tr class="separator:a02ff11b88be94392151873e06a30b276"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a91c7971c9d0a2971b9a6fa4d841c761d" id="r_a91c7971c9d0a2971b9a6fa4d841c761d"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaclib.html#a91c7971c9d0a2971b9a6fa4d841c761d">gridfire::reaclib::get_all_reactions</a> ()</td></tr>
-<tr class="memdesc:a91c7971c9d0a2971b9a6fa4d841c761d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Provides global access to the fully initialized REACLIB reaction set.  <br /></td></tr>
-<tr class="separator:a91c7971c9d0a2971b9a6fa4d841c761d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5f2326f2f76cb1895d6cf5daed9b030b" id="r_a5f2326f2f76cb1895d6cf5daed9b030b"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaclib.html#a5f2326f2f76cb1895d6cf5daed9b030b">gridfire::reaclib::get_all_reaclib_reactions</a> ()</td></tr>
+<tr class="memdesc:a5f2326f2f76cb1895d6cf5daed9b030b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Provides global access to the fully initialized REACLIB reaction set.  <br /></td></tr>
+<tr class="separator:a5f2326f2f76cb1895d6cf5daed9b030b"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="var-members" name="var-members"></a>
 Variables</h2></td></tr>
-<tr class="memitem:a5dba5efc372d2a9e9e846dfd6563f3c0" id="r_a5dba5efc372d2a9e9e846dfd6563f3c0"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaclib.html#a5dba5efc372d2a9e9e846dfd6563f3c0">gridfire::reaclib::s_all_reaclib_reactions_ptr</a> = nullptr</td></tr>
-<tr class="separator:a5dba5efc372d2a9e9e846dfd6563f3c0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1f75b17a44c23261a221f7558b1a63d9" id="r_a1f75b17a44c23261a221f7558b1a63d9"><td class="memItemLeft" align="right" valign="top">static std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaclib.html#a1f75b17a44c23261a221f7558b1a63d9">gridfire::reaclib::s_all_reaclib_reactions_ptr</a> = nullptr</td></tr>
+<tr class="separator:a1f75b17a44c23261a221f7558b1a63d9"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Function Documentation</h2>
 <a id="a2c6902cf3e699a1a65e871efa878a6ab" name="a2c6902cf3e699a1a65e871efa878a6ab"></a>
diff --git a/docs/html/reaclib_8cpp.js b/docs/html/reaclib_8cpp.js
index c9c48567..6fc60882 100644
--- a/docs/html/reaclib_8cpp.js
+++ b/docs/html/reaclib_8cpp.js
@@ -1,10 +1,10 @@
 var reaclib_8cpp =
 [
     [ "gridfire::reaclib::ReactionRecord", "structgridfire_1_1reaclib_1_1_reaction_record.html", "structgridfire_1_1reaclib_1_1_reaction_record" ],
-    [ "gridfire::reaclib::get_all_reactions", "namespacegridfire_1_1reaclib.html#a91c7971c9d0a2971b9a6fa4d841c761d", null ],
+    [ "gridfire::reaclib::get_all_reaclib_reactions", "namespacegridfire_1_1reaclib.html#a5f2326f2f76cb1895d6cf5daed9b030b", null ],
     [ "gridfire::reaclib::initializeAllReaclibReactions", "namespacegridfire_1_1reaclib.html#a02ff11b88be94392151873e06a30b276", null ],
     [ "gridfire::reaclib::operator<<", "namespacegridfire_1_1reaclib.html#a6bb94d5adc7bb9db5a67f770f7453e63", null ],
     [ "gridfire::reaclib::parseSpeciesString", "namespacegridfire_1_1reaclib.html#afc0deac6cbef076e8884e66fd3ab66e0", null ],
     [ "trim_whitespace", "reaclib_8cpp.html#a2c6902cf3e699a1a65e871efa878a6ab", null ],
-    [ "gridfire::reaclib::s_all_reaclib_reactions_ptr", "namespacegridfire_1_1reaclib.html#a5dba5efc372d2a9e9e846dfd6563f3c0", null ]
+    [ "gridfire::reaclib::s_all_reaclib_reactions_ptr", "namespacegridfire_1_1reaclib.html#a1f75b17a44c23261a221f7558b1a63d9", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/reaclib_8h.html b/docs/html/reaclib_8h.html
index cd1ee766..7df66c23 100644
--- a/docs/html/reaclib_8h.html
+++ b/docs/html/reaclib_8h.html
@@ -117,9 +117,9 @@ Namespaces</h2></td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:a91c7971c9d0a2971b9a6fa4d841c761d" id="r_a91c7971c9d0a2971b9a6fa4d841c761d"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaclib.html#a91c7971c9d0a2971b9a6fa4d841c761d">gridfire::reaclib::get_all_reactions</a> ()</td></tr>
-<tr class="memdesc:a91c7971c9d0a2971b9a6fa4d841c761d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Provides global access to the fully initialized REACLIB reaction set.  <br /></td></tr>
-<tr class="separator:a91c7971c9d0a2971b9a6fa4d841c761d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5f2326f2f76cb1895d6cf5daed9b030b" id="r_a5f2326f2f76cb1895d6cf5daed9b030b"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaclib.html#a5f2326f2f76cb1895d6cf5daed9b030b">gridfire::reaclib::get_all_reaclib_reactions</a> ()</td></tr>
+<tr class="memdesc:a5f2326f2f76cb1895d6cf5daed9b030b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Provides global access to the fully initialized REACLIB reaction set.  <br /></td></tr>
+<tr class="separator:a5f2326f2f76cb1895d6cf5daed9b030b"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="var-members" name="var-members"></a>
 Variables</h2></td></tr>
diff --git a/docs/html/reaclib_8h.js b/docs/html/reaclib_8h.js
index 4336a3bb..7b85f565 100644
--- a/docs/html/reaclib_8h.js
+++ b/docs/html/reaclib_8h.js
@@ -1,5 +1,5 @@
 var reaclib_8h =
 [
-    [ "gridfire::reaclib::get_all_reactions", "namespacegridfire_1_1reaclib.html#a91c7971c9d0a2971b9a6fa4d841c761d", null ],
+    [ "gridfire::reaclib::get_all_reaclib_reactions", "namespacegridfire_1_1reaclib.html#a5f2326f2f76cb1895d6cf5daed9b030b", null ],
     [ "gridfire::reaclib::s_initialized", "namespacegridfire_1_1reaclib.html#af6ff0dfe7ffe34c73ba9acbab5ef8a66", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/reaction_8cpp.html b/docs/html/reaction_8cpp.html
index 0e92fb6d..d406dee5 100644
--- a/docs/html/reaction_8cpp.html
+++ b/docs/html/reaction_8cpp.html
@@ -123,8 +123,6 @@ Classes</h2></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html">std::hash&lt; gridfire::reaction::ReactionSet &gt;</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html">std::hash&lt; gridfire::reaction::LogicalReactionSet &gt;</a></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
 Namespaces</h2></td></tr>
@@ -138,8 +136,8 @@ Namespaces</h2></td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:abfcfafc0cda0c3ed56930a12e7ead67f" id="r_abfcfafc0cda0c3ed56930a12e7ead67f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">LogicalReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaction.html#abfcfafc0cda0c3ed56930a12e7ead67f">gridfire::reaction::packReactionSetToLogicalReactionSet</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1">ReactionSet</a> &amp;reactionSet)</td></tr>
-<tr class="separator:abfcfafc0cda0c3ed56930a12e7ead67f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af34403cccdb4a091e979f0f895be2f8c" id="r_af34403cccdb4a091e979f0f895be2f8c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaction.html#af34403cccdb4a091e979f0f895be2f8c">gridfire::reaction::packReactionSet</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;reactionSet)</td></tr>
+<tr class="separator:af34403cccdb4a091e979f0f895be2f8c"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 </div><!-- contents -->
 </div><!-- doc-content -->
diff --git a/docs/html/reaction_8cpp.js b/docs/html/reaction_8cpp.js
index 395176c3..373c4a36 100644
--- a/docs/html/reaction_8cpp.js
+++ b/docs/html/reaction_8cpp.js
@@ -2,6 +2,5 @@ var reaction_8cpp =
 [
     [ "std::hash< gridfire::reaction::Reaction >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4" ],
     [ "std::hash< gridfire::reaction::ReactionSet >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4" ],
-    [ "std::hash< gridfire::reaction::LogicalReactionSet >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4" ],
-    [ "gridfire::reaction::packReactionSetToLogicalReactionSet", "namespacegridfire_1_1reaction.html#abfcfafc0cda0c3ed56930a12e7ead67f", null ]
+    [ "gridfire::reaction::packReactionSet", "namespacegridfire_1_1reaction.html#af34403cccdb4a091e979f0f895be2f8c", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/reaction_8h.html b/docs/html/reaction_8h.html
index 11770d7f..dd9dac3c 100644
--- a/docs/html/reaction_8h.html
+++ b/docs/html/reaction_8h.html
@@ -102,7 +102,7 @@ $(function(){initNavTree('reaction_8h.html',''); initResizable(true); });
   <div class="summary">
 <a href="#nested-classes">Classes</a> &#124;
 <a href="#namespaces">Namespaces</a> &#124;
-<a href="#typedef-members">Typedefs</a> &#124;
+<a href="#enum-members">Enumerations</a> &#124;
 <a href="#func-members">Functions</a>  </div>
   <div class="headertitle"><div class="title">reaction.h File Reference</div></div>
 </div><!--header-->
@@ -118,7 +118,7 @@ $(function(){initNavTree('reaction_8h.html',''); initResizable(true); });
 <code>#include &lt;vector&gt;</code><br />
 <code>#include &lt;unordered_set&gt;</code><br />
 <code>#include &quot;cppad/cppad.hpp&quot;</code><br />
-<code>#include &quot;xxhash64.h&quot;</code><br />
+<code>#include &quot;fourdst/composition/composition.h&quot;</code><br />
 </div><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
 Classes</h2></td></tr>
@@ -128,10 +128,12 @@ Classes</h2></td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></td></tr>
 <tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Represents a single nuclear reaction from a specific data source.  <a href="classgridfire_1_1reaction_1_1_reaction.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html">gridfire::reaction::LogicalReaction</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Represents a "logical" reaction that aggregates rates from multiple sources.  <a href="classgridfire_1_1reaction_1_1_logical_reaction.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">gridfire::reaction::ReaclibReaction</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">gridfire::reaction::LogicalReaclibReaction</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Represents a "logical" reaction that aggregates rates from multiple sources.  <a href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
@@ -141,23 +143,22 @@ Namespaces</h2></td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="typedef-members" name="typedef-members"></a>
-Typedefs</h2></td></tr>
-<tr class="memitem:ad838ce3fb6cc02c3fd90b924a0dd91b1" id="r_ad838ce3fb6cc02c3fd90b924a0dd91b1"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1">gridfire::reaction::ReactionSet</a> = <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html">TemplatedReactionSet</a>&lt;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a>&gt;</td></tr>
-<tr class="memdesc:ad838ce3fb6cc02c3fd90b924a0dd91b1"><td class="mdescLeft">&#160;</td><td class="mdescRight">A set of reactions, typically from a single source like REACLIB.  <br /></td></tr>
-<tr class="separator:ad838ce3fb6cc02c3fd90b924a0dd91b1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa86f08712565f278adacc7cd2361eb31" id="r_aa86f08712565f278adacc7cd2361eb31"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a> = <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html">TemplatedReactionSet</a>&lt;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html">LogicalReaction</a>&gt;</td></tr>
-<tr class="memdesc:aa86f08712565f278adacc7cd2361eb31"><td class="mdescLeft">&#160;</td><td class="mdescRight">A set of logical reactions.  <br /></td></tr>
-<tr class="separator:aa86f08712565f278adacc7cd2361eb31"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="enum-members" name="enum-members"></a>
+Enumerations</h2></td></tr>
+<tr class="memitem:a026997f11e811fa7754ac9121c4ba74e" id="r_a026997f11e811fa7754ac9121c4ba74e"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">gridfire::reaction::ReactionType</a> { <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74ea32c7d8943bec86a6d7d5e03598670ca8">gridfire::reaction::WEAK</a>
+, <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74eaf9885ed04411bef7b70f78b643c6a220">gridfire::reaction::REACLIB</a>
+, <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74ea32b0fb6c82a2ec42865b2c823216baa9">gridfire::reaction::LOGICAL_REACLIB</a>
+ }</td></tr>
+<tr class="separator:a026997f11e811fa7754ac9121c4ba74e"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:abfcfafc0cda0c3ed56930a12e7ead67f" id="r_abfcfafc0cda0c3ed56930a12e7ead67f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">LogicalReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaction.html#abfcfafc0cda0c3ed56930a12e7ead67f">gridfire::reaction::packReactionSetToLogicalReactionSet</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1">ReactionSet</a> &amp;reactionSet)</td></tr>
-<tr class="separator:abfcfafc0cda0c3ed56930a12e7ead67f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af34403cccdb4a091e979f0f895be2f8c" id="r_af34403cccdb4a091e979f0f895be2f8c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaction.html#af34403cccdb4a091e979f0f895be2f8c">gridfire::reaction::packReactionSet</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;reactionSet)</td></tr>
+<tr class="separator:af34403cccdb4a091e979f0f895be2f8c"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
 <div class="textblock"><p>Defines classes for representing and managing nuclear reactions. </p>
-<p>This file contains the core data structures for handling nuclear reactions, including individual reactions from specific sources (<code>Reaction</code>), collections of reactions (<code>ReactionSet</code>), and logical reactions that aggregate rates from multiple sources (<code>LogicalReaction</code>, <code>LogicalReactionSet</code>). </p>
+<p>This file contains the core data structures for handling nuclear reactions, including individual reactions from specific sources (<code>Reaction</code>), collections of reactions (<code>ReactionSet</code>), and logical reactions that aggregate rates from multiple sources (<code>LogicalReaclibReaction</code>, <code>LogicalReactionSet</code>). </p>
 </div></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/reaction_8h.js b/docs/html/reaction_8h.js
index 6191d4da..4ab4683f 100644
--- a/docs/html/reaction_8h.js
+++ b/docs/html/reaction_8h.js
@@ -2,9 +2,13 @@ var reaction_8h =
 [
     [ "gridfire::reaction::RateCoefficientSet", "structgridfire_1_1reaction_1_1_rate_coefficient_set.html", "structgridfire_1_1reaction_1_1_rate_coefficient_set" ],
     [ "gridfire::reaction::Reaction", "classgridfire_1_1reaction_1_1_reaction.html", "classgridfire_1_1reaction_1_1_reaction" ],
-    [ "gridfire::reaction::LogicalReaction", "classgridfire_1_1reaction_1_1_logical_reaction.html", "classgridfire_1_1reaction_1_1_logical_reaction" ],
-    [ "gridfire::reaction::TemplatedReactionSet< ReactionT >", "classgridfire_1_1reaction_1_1_templated_reaction_set.html", "classgridfire_1_1reaction_1_1_templated_reaction_set" ],
-    [ "gridfire::reaction::LogicalReactionSet", "namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31", null ],
-    [ "gridfire::reaction::ReactionSet", "namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1", null ],
-    [ "gridfire::reaction::packReactionSetToLogicalReactionSet", "namespacegridfire_1_1reaction.html#abfcfafc0cda0c3ed56930a12e7ead67f", null ]
+    [ "gridfire::reaction::ReaclibReaction", "classgridfire_1_1reaction_1_1_reaclib_reaction.html", "classgridfire_1_1reaction_1_1_reaclib_reaction" ],
+    [ "gridfire::reaction::LogicalReaclibReaction", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction" ],
+    [ "gridfire::reaction::ReactionSet", "classgridfire_1_1reaction_1_1_reaction_set.html", "classgridfire_1_1reaction_1_1_reaction_set" ],
+    [ "gridfire::reaction::ReactionType", "namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e", [
+      [ "gridfire::reaction::ReactionType::WEAK", "namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74ea32c7d8943bec86a6d7d5e03598670ca8", null ],
+      [ "gridfire::reaction::ReactionType::REACLIB", "namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74eaf9885ed04411bef7b70f78b643c6a220", null ],
+      [ "gridfire::reaction::ReactionType::LOGICAL_REACLIB", "namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74ea32b0fb6c82a2ec42865b2c823216baa9", null ]
+    ] ],
+    [ "gridfire::reaction::packReactionSet", "namespacegridfire_1_1reaction.html#af34403cccdb4a091e979f0f895be2f8c", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/screening_2bindings_8cpp.html b/docs/html/screening_2bindings_8cpp.html
index ad60873d..7776ef3f 100644
--- a/docs/html/screening_2bindings_8cpp.html
+++ b/docs/html/screening_2bindings_8cpp.html
@@ -107,7 +107,6 @@ $(function(){initNavTree('screening_2bindings_8cpp.html',''); initResizable(true
 <div class="textblock"><code>#include &lt;pybind11/pybind11.h&gt;</code><br />
 <code>#include &lt;pybind11/stl.h&gt;</code><br />
 <code>#include &lt;pybind11/stl_bind.h&gt;</code><br />
-<code>#include &lt;string_view&gt;</code><br />
 <code>#include &lt;vector&gt;</code><br />
 <code>#include &quot;<a class="el" href="screening_2bindings_8h.html">bindings.h</a>&quot;</code><br />
 <code>#include &quot;<a class="el" href="screening_8h.html">gridfire/screening/screening.h</a>&quot;</code><br />
diff --git a/docs/html/screening__intermediate_8h.html b/docs/html/screening__intermediate_8h.html
new file mode 100644
index 00000000..818e304f
--- /dev/null
+++ b/docs/html/screening__intermediate_8h.html
@@ -0,0 +1,134 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/screening/screening_intermediate.h File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('screening__intermediate_8h.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#namespaces">Namespaces</a>  </div>
+  <div class="headertitle"><div class="title">screening_intermediate.h File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><code>#include &quot;<a class="el" href="screening__abstract_8h.html">gridfire/screening/screening_abstract.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="reaction_8h.html">gridfire/reaction/reaction.h</a>&quot;</code><br />
+<code>#include &quot;cppad/cppad.hpp&quot;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html">gridfire::screening::IntermediateScreeningModel</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html">screening</a></li><li class="navelem"><a class="el" href="screening__intermediate_8h.html">screening_intermediate.h</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/screening__intermediate_8h.js b/docs/html/screening__intermediate_8h.js
new file mode 100644
index 00000000..def4d34a
--- /dev/null
+++ b/docs/html/screening__intermediate_8h.js
@@ -0,0 +1,4 @@
+var screening__intermediate_8h =
+[
+    [ "gridfire::screening::IntermediateScreeningModel", "classgridfire_1_1screening_1_1_intermediate_screening_model.html", "classgridfire_1_1screening_1_1_intermediate_screening_model" ]
+];
\ No newline at end of file
diff --git a/docs/html/search/all_11.js b/docs/html/search/all_11.js
index de5a6217..fa808a05 100644
--- a/docs/html/search/all_11.js
+++ b/docs/html/search/all_11.js
@@ -1,17 +1,30 @@
 var searchData=
 [
   ['label_0',['label',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a2165deb1c0a54a5086b496cf34604fa5',1,'gridfire::reaclib::ReactionRecord']]],
-  ['last_5fobserved_5ftime_1',['last_observed_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a3e4d242a2f5f6726b980119ed80a9901',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['last_5fstep_5ftime_2',['last_step_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a349187ed1b13c91ef6f9d930db58d97b',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['library_3',['Library',['../index.html#autotoc_md23',1,'Building the C++ Library'],['../index.html#autotoc_md25',1,'Installing the Library']]],
-  ['loading_20and_20meson_20setup_4',['TUI config loading and meson setup',['../index.html#autotoc_md20',1,'']]],
-  ['loading_20setup_20and_20build_5',['CLI config loading, setup, and build',['../index.html#autotoc_md21',1,'']]],
-  ['logging_2ecpp_6',['logging.cpp',['../logging_8cpp.html',1,'']]],
-  ['logging_2eh_7',['logging.h',['../logging_8h.html',1,'']]],
-  ['logical_20flow_8',['Code Architecture and Logical Flow',['../index.html#autotoc_md27',1,'']]],
-  ['logicalreaction_9',['LogicalReaction',['../classgridfire_1_1reaction_1_1_logical_reaction.html',1,'gridfire::reaction::LogicalReaction'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a6965906ea33ebd0d615811219d9e9537',1,'gridfire::reaction::LogicalReaction::LogicalReaction()']]],
-  ['logicalreactionset_10',['LogicalReactionSet',['../namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31',1,'gridfire::reaction::LogicalReactionSet'],['../namespacegridfire.html#aa86f08712565f278adacc7cd2361eb31',1,'gridfire::LogicalReactionSet']]],
-  ['logmanager_11',['LogManager',['../classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103',1,'gridfire::AdaptiveEngineView::LogManager'],['../classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08',1,'gridfire::FileDefinedEngineView::LogManager'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de',1,'gridfire::io::SimpleReactionListFileParser::LogManager'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055',1,'gridfire::io::MESANetworkFileParser::LogManager']]],
-  ['lowerindex_12',['lowerIndex',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a2da59e4f6e2ba3eff581bacabbf387de',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]],
-  ['lt_20enginet_20gt_20_3a_13',['NetworkSolverStrategy&amp;lt;EngineT&amp;gt;:',['../index.html#autotoc_md37',1,'']]]
+  ['last_5fstep_5ftime_1',['last_step_time',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a92187c15b7bcb90adebecc87e1436a',1,'gridfire::solver::CVODESolverStrategy::TimestepContext']]],
+  ['library_2',['Library',['../index.html#autotoc_md23',1,'Building the C++ Library'],['../index.html#autotoc_md25',1,'Installing the Library']]],
+  ['loading_20and_20meson_20setup_3',['TUI config loading and meson setup',['../index.html#autotoc_md20',1,'']]],
+  ['loading_20setup_20and_20build_4',['CLI config loading, setup, and build',['../index.html#autotoc_md21',1,'']]],
+  ['log_5fantineutrino_5floss_5fbd_5',['log_antineutrino_loss_bd',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a9d4db2970fc7f525824f6666198b3d56',1,'gridfire::rates::weak::RateDataRow::log_antineutrino_loss_bd'],['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9134b85837be88ece72c20df9edce50d',1,'gridfire::rates::weak::WeakRatePayload::log_antineutrino_loss_bd']]],
+  ['log_5fbeta_5fminus_6',['log_beta_minus',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ab41dace2493e036460736d8124a3475c',1,'gridfire::rates::weak::RateDataRow::log_beta_minus'],['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aa2e81d295afba465427e46b36e1438e4',1,'gridfire::rates::weak::WeakRatePayload::log_beta_minus']]],
+  ['log_5fbeta_5fplus_7',['log_beta_plus',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a359555f2b05e4b30bf810e12456df43b',1,'gridfire::rates::weak::RateDataRow::log_beta_plus'],['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9d71d093fbb35cd8a451ea12cde28771',1,'gridfire::rates::weak::WeakRatePayload::log_beta_plus']]],
+  ['log_5felectron_5fcapture_8',['log_electron_capture',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a075a70baa4ac5859fb01d493e08debdd',1,'gridfire::rates::weak::RateDataRow::log_electron_capture'],['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aeb0494f46a0c6b9e29ed4cc15f07364b',1,'gridfire::rates::weak::WeakRatePayload::log_electron_capture']]],
+  ['log_5fneutrino_5floss_9',['log_neutrino_loss',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#aa603395b65c8639f8d93f73b7d9bd61e',1,'gridfire::rates::weak::WeakReactionEntry']]],
+  ['log_5fneutrino_5floss_5fec_10',['log_neutrino_loss_ec',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#abd2d7fc00f582316eae824ccafef9b4b',1,'gridfire::rates::weak::RateDataRow::log_neutrino_loss_ec'],['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a6bbeb82cc27fd59ceafa320c1515106a',1,'gridfire::rates::weak::WeakRatePayload::log_neutrino_loss_ec']]],
+  ['log_5fpositron_5fcapture_11',['log_positron_capture',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#afc3f5d3e5c3ec52134619fd462922f85',1,'gridfire::rates::weak::RateDataRow::log_positron_capture'],['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#abe1b2dd11ec550311a58555f3a945cbe',1,'gridfire::rates::weak::WeakRatePayload::log_positron_capture']]],
+  ['log_5frate_12',['log_rate',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a90b6e47918fa750c28917ba6136c7880',1,'gridfire::rates::weak::WeakReactionEntry']]],
+  ['log_5frhoye_13',['LOG_RHOYE',['../namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea1448b5920e7c95f07cbc08d3ba5b9746',1,'gridfire::rates::weak']]],
+  ['log_5frhoye_14',['log_rhoYe',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a17dde21438cabec9ae23a0d318c41a7a',1,'gridfire::rates::weak::WeakReactionEntry']]],
+  ['log_5frhoye_15',['log_rhoye',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ad7908a8b8a1db5014f23a7b3855156b0',1,'gridfire::rates::weak::RateDataRow']]],
+  ['log_5fstep_5fdiagnostics_16',['log_step_diagnostics',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a53c14f504e5b7827b4bab4a0a7a13341',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['log_5ftime_17',['log_time',['../class_solver_plugin_interface.html#a493a30c0ae4b2e1a89b7d03c02c0041c',1,'SolverPluginInterface']]],
+  ['logging_2ecpp_18',['logging.cpp',['../logging_8cpp.html',1,'']]],
+  ['logging_2eh_19',['logging.h',['../logging_8h.html',1,'']]],
+  ['logical_20flow_20',['Code Architecture and Logical Flow',['../index.html#autotoc_md27',1,'']]],
+  ['logical_5freaclib_21',['LOGICAL_REACLIB',['../namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74ea32b0fb6c82a2ec42865b2c823216baa9',1,'gridfire::reaction']]],
+  ['logicalreaclibreaction_22',['LogicalReaclibReaction',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html',1,'gridfire::reaction::LogicalReaclibReaction'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a0ff112dca1f88070effb6700429b42b4',1,'gridfire::reaction::LogicalReaclibReaction::LogicalReaclibReaction()']]],
+  ['logicaltrigger_23',['LogicalTrigger',['../classgridfire_1_1trigger_1_1_logical_trigger.html',1,'gridfire::trigger']]],
+  ['logmanager_24',['LogManager',['../classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103',1,'gridfire::AdaptiveEngineView::LogManager'],['../classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08',1,'gridfire::FileDefinedEngineView::LogManager'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de',1,'gridfire::io::SimpleReactionListFileParser::LogManager'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055',1,'gridfire::io::MESANetworkFileParser::LogManager']]],
+  ['lowerindex_25',['lowerIndex',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a2da59e4f6e2ba3eff581bacabbf387de',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]],
+  ['lt_20enginet_20gt_20_3a_26',['NetworkSolverStrategy&amp;lt;EngineT&amp;gt;:',['../index.html#autotoc_md37',1,'']]]
 ];
diff --git a/docs/html/search/all_12.js b/docs/html/search/all_12.js
index 0a0c5fc1..b46a92a6 100644
--- a/docs/html/search/all_12.js
+++ b/docs/html/search/all_12.js
@@ -1,122 +1,167 @@
 var searchData=
 [
-  ['m_5factivereactionindices_0',['m_activeReactionIndices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5factivereactions_1',['m_activeReactions',['../classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800',1,'gridfire::AdaptiveEngineView::m_activeReactions'],['../classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965',1,'gridfire::DefinedEngineView::m_activeReactions']]],
-  ['m_5factivespecies_2',['m_activeSpecies',['../classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940',1,'gridfire::AdaptiveEngineView::m_activeSpecies'],['../classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae',1,'gridfire::DefinedEngineView::m_activeSpecies']]],
-  ['m_5factivespeciesindices_3',['m_activeSpeciesIndices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5falgebraic_5fspecies_4',['m_algebraic_species',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5falgebraic_5fspecies_5findices_5',['m_algebraic_species_indices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a53862719dd73f98bc69eecde090cf655',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5fatomicreverserates_6',['m_atomicReverseRates',['../classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6',1,'gridfire::GraphEngine']]],
-  ['m_5fbaseengine_7',['m_baseEngine',['../classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8',1,'gridfire::AdaptiveEngineView::m_baseEngine'],['../classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195',1,'gridfire::DefinedEngineView::m_baseEngine'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93',1,'gridfire::MultiscalePartitioningEngineView::m_baseEngine']]],
-  ['m_5fcacheconfig_8',['m_cacheConfig',['../structgridfire_1_1_q_s_e_cache_key.html#a711acccecadd93495fd08c81838be2d8',1,'gridfire::QSECacheKey']]],
-  ['m_5fcached_5fresult_9',['m_cached_result',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
-  ['m_5fcached_5ftime_10',['m_cached_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a17b83f2478395c934c4ec2c964e9d35e',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
-  ['m_5fcachestats_11',['m_cacheStats',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5fcallback_12',['m_callback',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a70d801db98fe8e2e4e6010f37da29905',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_callback'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a44fbc45faa9e4b6864ac6b81282941b5',1,'gridfire::solver::DirectNetworkSolver::m_callback']]],
-  ['m_5fchapter_13',['m_chapter',['../classgridfire_1_1reaction_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b',1,'gridfire::reaction::Reaction::m_chapter'],['../classgridfire_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b',1,'gridfire::Reaction::m_chapter']]],
-  ['m_5fconfig_14',['m_config',['../classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18',1,'gridfire::GraphEngine::m_config'],['../classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30',1,'gridfire::AdaptiveEngineView::m_config'],['../classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362',1,'gridfire::FileDefinedEngineView::m_config'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874',1,'gridfire::io::SimpleReactionListFileParser::m_config'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d',1,'gridfire::io::MESANetworkFileParser::m_config'],['../classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09',1,'gridfire::Network::m_config'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a2cc12e737a753a42b72a45be3fbfa8ab',1,'gridfire::solver::DirectNetworkSolver::m_config']]],
-  ['m_5fconstants_15',['m_constants',['../classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e',1,'gridfire::GraphEngine::m_constants'],['../classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410',1,'gridfire::Network::m_constants']]],
-  ['m_5fdepth_16',['m_depth',['../classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01',1,'gridfire::GraphEngine']]],
-  ['m_5fdt0_17',['m_dt0',['../classgridfire_1_1approx8_1_1_approx8_network.html#a6ed8022834e9541b3e547dd867648b0f',1,'gridfire::approx8::Approx8Network']]],
-  ['m_5fdynamic_5fspecies_18',['m_dynamic_species',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5fdynamic_5fspecies_5findices_19',['m_dynamic_species_indices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a38b4f0373c3bd81503889650c0bb69bb',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5fengine_20',['m_engine',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d',1,'gridfire::GraphEngine::AtomicReverseRate::m_engine'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8',1,'gridfire::solver::NetworkSolverStrategy::m_engine'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a035962dfdfc13d255def98befefcccd9',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_engine'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_engine']]],
-  ['m_5feps_5fnuc_21',['m_eps_nuc',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a24207163a7ea2dde675b458f9df37a99',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
-  ['m_5ffilename_22',['m_fileName',['../classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b',1,'gridfire::FileDefinedEngineView']]],
-  ['m_5ffilename_23',['m_filename',['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099',1,'gridfire::io::MESANetworkFileParser']]],
-  ['m_5fformat_24',['m_format',['../classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18',1,'gridfire::Network']]],
-  ['m_5ffull_5fjacobian_5fsparsity_5fpattern_25',['m_full_jacobian_sparsity_pattern',['../classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06',1,'gridfire::GraphEngine']]],
-  ['m_5fground_5fstate_5fspin_26',['m_ground_state_spin',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245',1,'gridfire::partition::GroundStatePartitionFunction']]],
-  ['m_5fhash_27',['m_hash',['../structgridfire_1_1_q_s_e_cache_key.html#ab860b40d4ccb3c16a962d96bc767ff05',1,'gridfire::QSECacheKey']]],
-  ['m_5fhit_28',['m_hit',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a0c3bd8d5918e344657227a09cd7e39a5',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['m_5fid_29',['m_id',['../classgridfire_1_1reaction_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b',1,'gridfire::reaction::Reaction::m_id'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5fda3af5ea9ae0ecfb60a61a9e07f5b4',1,'gridfire::reaction::TemplatedReactionSet::m_id'],['../classgridfire_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b',1,'gridfire::Reaction::m_id']]],
-  ['m_5findex_30',['m_index',['../structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e',1,'gridfire::expectations::EngineIndexError']]],
-  ['m_5fisstale_31',['m_isStale',['../classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e',1,'gridfire::AdaptiveEngineView::m_isStale'],['../classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382',1,'gridfire::DefinedEngineView::m_isStale']]],
-  ['m_5fjac_5fwork_32',['m_jac_work',['../classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891',1,'gridfire::GraphEngine']]],
-  ['m_5fjacobianmatrix_33',['m_jacobianMatrix',['../classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910',1,'gridfire::GraphEngine']]],
-  ['m_5flast_5fobserved_5ftime_34',['m_last_observed_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a49268e65b89444c3caf1e69323ce545b',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
-  ['m_5flast_5fstep_5ftime_35',['m_last_step_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a69d773a1cfe4804876dbf23de1f212c9',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
-  ['m_5flogger_36',['m_logger',['../classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53',1,'gridfire::GraphEngine::m_logger'],['../classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193',1,'gridfire::AdaptiveEngineView::m_logger'],['../classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3',1,'gridfire::DefinedEngineView::m_logger'],['../classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432',1,'gridfire::FileDefinedEngineView::m_logger'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a',1,'gridfire::MultiscalePartitioningEngineView::m_logger'],['../classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d',1,'gridfire::NetworkPrimingEngineView::m_logger'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66',1,'gridfire::io::SimpleReactionListFileParser::m_logger'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937',1,'gridfire::io::MESANetworkFileParser::m_logger'],['../classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5',1,'gridfire::Network::m_logger'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b',1,'gridfire::partition::CompositePartitionFunction::m_logger'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b',1,'gridfire::partition::GroundStatePartitionFunction::m_logger'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6',1,'gridfire::partition::RauscherThielemannPartitionFunction::m_logger'],['../classgridfire_1_1reaction_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4',1,'gridfire::reaction::Reaction::m_logger'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac6fcc5b08938b73ff6dac680e5bf28d9',1,'gridfire::reaction::TemplatedReactionSet::m_logger'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f',1,'gridfire::screening::WeakScreeningModel::m_logger'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a6cc605a83b5ac5ae048d1044be284ada',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_logger'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079',1,'gridfire::solver::DirectNetworkSolver::m_logger'],['../classgridfire_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4',1,'gridfire::Reaction::m_logger']]],
-  ['m_5flogmanager_37',['m_logManager',['../classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16',1,'gridfire::Network']]],
-  ['m_5fmessage_38',['m_message',['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb',1,'gridfire::exceptions::StaleEngineError::m_message'],['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a77c9a660a2748c2e3a1c7e94edad1cf0',1,'gridfire::exceptions::FailedToPartitionEngineError::m_message'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a581527fc03fdd84a8309c147259ec09d',1,'gridfire::exceptions::NetworkResizedError::m_message'],['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047',1,'gridfire::exceptions::UnableToSetNetworkReactionsError::m_message'],['../structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc',1,'gridfire::expectations::EngineError::m_message']]],
-  ['m_5fmiss_39',['m_miss',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a73ca615753553f4a85160bd9f166da5b',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['m_5fnetworkspecies_40',['m_networkSpecies',['../classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc',1,'gridfire::GraphEngine::m_networkSpecies'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a0eed45bfe5296e4ca9f87b5b53841931',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_networkSpecies']]],
-  ['m_5fnetworkspeciesmap_41',['m_networkSpeciesMap',['../classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827',1,'gridfire::GraphEngine']]],
-  ['m_5fnum_5fsteps_42',['m_num_steps',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
-  ['m_5foperatorhits_43',['m_operatorHits',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac18229250c4c160aada96e19325faa29',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['m_5foperatormisses_44',['m_operatorMisses',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['m_5fparser_45',['m_parser',['../classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500',1,'gridfire::FileDefinedEngineView']]],
-  ['m_5fpartitiondata_46',['m_partitionData',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a50ce19df4c12e22bbcb61422248a4038',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
-  ['m_5fpartitionfunction_47',['m_partitionFunction',['../classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e',1,'gridfire::GraphEngine']]],
-  ['m_5fpartitionfunctions_48',['m_partitionFunctions',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8',1,'gridfire::partition::CompositePartitionFunction']]],
-  ['m_5fpename_49',['m_peName',['../classgridfire_1_1reaction_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248',1,'gridfire::reaction::Reaction::m_peName'],['../classgridfire_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248',1,'gridfire::Reaction::m_peName']]],
-  ['m_5fprecomputedreactions_50',['m_precomputedReactions',['../classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3',1,'gridfire::GraphEngine']]],
-  ['m_5fprimingspecies_51',['m_primingSpecies',['../classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5',1,'gridfire::NetworkPrimingEngineView']]],
-  ['m_5fproducts_52',['m_products',['../classgridfire_1_1reaction_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e',1,'gridfire::reaction::Reaction::m_products'],['../classgridfire_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e',1,'gridfire::Reaction::m_products']]],
-  ['m_5fqse_5fabundance_5fcache_53',['m_qse_abundance_cache',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5fqse_5fgroups_54',['m_qse_groups',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5fqse_5fsolve_5findices_55',['m_qse_solve_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4eb11e99dc2a7e038d815bf7c6bd0be8',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
-  ['m_5fqvalue_56',['m_qValue',['../classgridfire_1_1reaction_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b',1,'gridfire::reaction::Reaction::m_qValue'],['../classgridfire_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b',1,'gridfire::Reaction::m_qValue']]],
-  ['m_5fratecoefficients_57',['m_rateCoefficients',['../classgridfire_1_1reaction_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72',1,'gridfire::reaction::Reaction::m_rateCoefficients'],['../classgridfire_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72',1,'gridfire::Reaction::m_rateCoefficients']]],
-  ['m_5frates_58',['m_rates',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a81f75f0085f8a5a45169f0b7240c809d',1,'gridfire::reaction::LogicalReaction']]],
-  ['m_5freactants_59',['m_reactants',['../classgridfire_1_1reaction_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11',1,'gridfire::reaction::Reaction::m_reactants'],['../classgridfire_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11',1,'gridfire::Reaction::m_reactants']]],
-  ['m_5freaction_60',['m_reaction',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a98ed8b450f7868f55e8362a848a4710d',1,'gridfire::GraphEngine::AtomicReverseRate']]],
-  ['m_5freactionidmap_61',['m_reactionIDMap',['../classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3',1,'gridfire::GraphEngine']]],
-  ['m_5freactionindexmap_62',['m_reactionIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de',1,'gridfire::AdaptiveEngineView::m_reactionIndexMap'],['../classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd',1,'gridfire::DefinedEngineView::m_reactionIndexMap']]],
-  ['m_5freactionnamemap_63',['m_reactionNameMap',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a3a4c2448865580001fd3c797b9f56979',1,'gridfire::reaction::TemplatedReactionSet']]],
-  ['m_5freactions_64',['m_reactions',['../classgridfire_1_1_graph_engine.html#acb7c4f5108b0efeae48ad15598e808c3',1,'gridfire::GraphEngine::m_reactions'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5962968fe478c79250e9d88d80a87600',1,'gridfire::reaction::TemplatedReactionSet::m_reactions']]],
-  ['m_5freverse_65',['m_reverse',['../classgridfire_1_1reaction_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9',1,'gridfire::reaction::Reaction::m_reverse'],['../classgridfire_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9',1,'gridfire::Reaction::m_reverse']]],
-  ['m_5frho_66',['m_rho',['../structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63',1,'gridfire::QSECacheKey::m_rho'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::m_rho'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44',1,'gridfire::exceptions::StaleEngineTrigger::state::m_rho'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_rho'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_rho']]],
-  ['m_5frhsadfun_67',['m_rhsADFun',['../classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876',1,'gridfire::GraphEngine']]],
-  ['m_5fscreeningmodel_68',['m_screeningModel',['../classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210',1,'gridfire::GraphEngine']]],
-  ['m_5fscreeningtype_69',['m_screeningType',['../classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80',1,'gridfire::GraphEngine']]],
-  ['m_5fsourcelabel_70',['m_sourceLabel',['../classgridfire_1_1reaction_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6',1,'gridfire::reaction::Reaction::m_sourceLabel'],['../classgridfire_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6',1,'gridfire::Reaction::m_sourceLabel']]],
-  ['m_5fsources_71',['m_sources',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a7fe91d24e20ebc76d612f6ad742f476f',1,'gridfire::reaction::LogicalReaction']]],
-  ['m_5fspecies_5fcache_72',['m_species_cache',['../class_py_engine.html#a73caaa7606e2cdfd1aa82729a78ebb73',1,'PyEngine::m_species_cache'],['../class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03',1,'PyDynamicEngine::m_species_cache']]],
-  ['m_5fspeciesindexmap_73',['m_speciesIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093',1,'gridfire::AdaptiveEngineView::m_speciesIndexMap'],['../classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e',1,'gridfire::DefinedEngineView::m_speciesIndexMap']]],
-  ['m_5fspeciestoindexmap_74',['m_speciesToIndexMap',['../classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7',1,'gridfire::GraphEngine']]],
-  ['m_5fstate_75',['m_state',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a7f9fa2e34da3772714723ef7d5083be5',1,'gridfire::exceptions::StaleEngineTrigger']]],
-  ['m_5fstiff_76',['m_stiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#a697cb49bebc8d0659eb791500c451c67',1,'gridfire::approx8::Approx8Network::m_stiff'],['../classgridfire_1_1_network.html#aefe364ae5af783e19e7b93bfd475566e',1,'gridfire::Network::m_stiff']]],
-  ['m_5fstoichiometrymatrix_77',['m_stoichiometryMatrix',['../classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24',1,'gridfire::GraphEngine']]],
-  ['m_5ft_78',['m_t',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a352cd33629e63286808df617d36cb70b',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
-  ['m_5ft9_79',['m_T9',['../structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7',1,'gridfire::QSECacheKey::m_T9'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::m_T9'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963',1,'gridfire::exceptions::StaleEngineTrigger::state::m_T9'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_T9'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_T9']]],
-  ['m_5ftmax_80',['m_tMax',['../classgridfire_1_1approx8_1_1_approx8_network.html#a6fadf388f07c160f1887a3cb72eaa869',1,'gridfire::approx8::Approx8Network']]],
-  ['m_5ftotal_5fsteps_81',['m_total_steps',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#ac1cddf0f2955d4282afcf4a90a2de9c0',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
-  ['m_5fuseprecomputation_82',['m_usePrecomputation',['../classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de',1,'gridfire::GraphEngine']]],
-  ['m_5fusereversereactions_83',['m_useReverseReactions',['../classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc',1,'gridfire::GraphEngine']]],
-  ['m_5fview_84',['m_view',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
-  ['m_5fy_85',['m_Y',['../structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a',1,'gridfire::QSECacheKey::m_Y'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf',1,'gridfire::exceptions::StaleEngineTrigger::state::m_Y']]],
-  ['m_5fy_86',['m_y',['../classgridfire_1_1approx8_1_1_approx8_network.html#abf9f13ff532917ddac4a7d987698836d',1,'gridfire::approx8::Approx8Network']]],
-  ['m_5fy_5ffull_5finitial_87',['m_Y_full_initial',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3bc901d2d8234d1f61e94d0fe0777f7d',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
-  ['m_5fy_5fscale_88',['m_Y_scale',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
-  ['mainpage_2emd_89',['mainpage.md',['../mainpage_8md.html',1,'']]],
-  ['make_5fkey_90',['make_key',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a99c80e2f4ba36e88e08e2abd650a08fb',1,'gridfire::partition::GroundStatePartitionFunction::make_key()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec',1,'gridfire::partition::RauscherThielemannPartitionFunction::make_key()']]],
-  ['manual_20build_20instructions_91',['Manual Build Instructions',['../index.html#autotoc_md11',1,'']]],
-  ['mapculledtofull_92',['mapCulledToFull',['../classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1',1,'gridfire::AdaptiveEngineView']]],
-  ['mapculledtofullreactionindex_93',['mapCulledToFullReactionIndex',['../classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101',1,'gridfire::AdaptiveEngineView']]],
-  ['mapculledtofullspeciesindex_94',['mapCulledToFullSpeciesIndex',['../classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8',1,'gridfire::AdaptiveEngineView']]],
-  ['mapfulltoculled_95',['mapFullToCulled',['../classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44',1,'gridfire::AdaptiveEngineView']]],
-  ['mapfulltoview_96',['mapFullToView',['../classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873',1,'gridfire::DefinedEngineView']]],
-  ['mapnetintomolarabundancevector_97',['mapNetInToMolarAbundanceVector',['../classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a',1,'gridfire::DynamicEngine::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f',1,'gridfire::GraphEngine::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019',1,'gridfire::AdaptiveEngineView::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2',1,'gridfire::DefinedEngineView::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0',1,'gridfire::MultiscalePartitioningEngineView::mapNetInToMolarAbundanceVector()'],['../class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac',1,'PyDynamicEngine::mapNetInToMolarAbundanceVector()']]],
-  ['mapviewtofull_98',['mapViewToFull',['../classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843',1,'gridfire::DefinedEngineView']]],
-  ['mapviewtofullreactionindex_99',['mapViewToFullReactionIndex',['../classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1',1,'gridfire::DefinedEngineView']]],
-  ['mapviewtofullspeciesindex_100',['mapViewToFullSpeciesIndex',['../classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a',1,'gridfire::DefinedEngineView']]],
-  ['massfractionchanges_101',['massFractionChanges',['../structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7',1,'gridfire::PrimingReport']]],
-  ['matrix_5ftype_102',['matrix_type',['../namespacegridfire_1_1approx8.html#a275aecf94e3145c2ff3d1756deda54ce',1,'gridfire::approx8']]],
-  ['max_5fiterations_5freached_103',['MAX_ITERATIONS_REACHED',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287',1,'gridfire']]],
-  ['mean_5ftimescale_104',['mean_timescale',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
-  ['mesanetworkfileparser_105',['MESANetworkFileParser',['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html',1,'gridfire::io::MESANetworkFileParser'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c',1,'gridfire::io::MESANetworkFileParser::MESANetworkFileParser()']]],
-  ['meson_20setup_106',['TUI config loading and meson setup',['../index.html#autotoc_md20',1,'']]],
-  ['method_107',['DirectNetworkSolver (Implicit Rosenbrock Method)',['../index.html#autotoc_md41',1,'']]],
-  ['middle_108',['MIDDLE',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
-  ['min_5fabundance_5fthreshold_109',['MIN_ABUNDANCE_THRESHOLD',['../namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06',1,'gridfire']]],
-  ['min_5fdensity_5fthreshold_110',['MIN_DENSITY_THRESHOLD',['../namespacegridfire.html#ada3c137c014ecd8d06200fea2d1a9f50',1,'gridfire']]],
-  ['min_5fjacobian_5fthreshold_111',['MIN_JACOBIAN_THRESHOLD',['../namespacegridfire.html#ae01b1738df1921db565bcbd68dd6cf64',1,'gridfire']]],
-  ['minimum_20compiler_20versions_112',['Minimum compiler versions',['../index.html#autotoc_md26',1,'']]],
-  ['mion_113',['mIon',['../structgridfire_1_1approx8_1_1_approx8_net.html#a928b7810cb2993d59d40aa73c2faef18',1,'gridfire::approx8::Approx8Net']]],
-  ['miss_114',['miss',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac55fb580dd4b9763cefe4612555b03f3',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['misses_115',['misses',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5df4f2c27e9eaa781c972a8c9b595787',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['molarabundance_116',['MolarAbundance',['../structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65',1,'gridfire::NetIn']]],
-  ['multiscalepartitioningengineview_117',['MultiscalePartitioningEngineView',['../classgridfire_1_1_multiscale_partitioning_engine_view.html',1,'gridfire::MultiscalePartitioningEngineView'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f',1,'gridfire::MultiscalePartitioningEngineView::MultiscalePartitioningEngineView()']]],
-  ['multiscalepartitioningengineview_20example_118',['MultiscalePartitioningEngineView Example',['../engine_8h.html#MultiscalePartitioningEngineViewExample',1,'']]]
+  ['m_5fa_0',['m_A',['../classgridfire_1_1trigger_1_1_and_trigger.html#a99be74b126d50c15d21c0724d933af87',1,'gridfire::trigger::AndTrigger::m_A'],['../classgridfire_1_1trigger_1_1_or_trigger.html#a6da04b5b15371f7087be03bb337dbdd6',1,'gridfire::trigger::OrTrigger::m_A'],['../classgridfire_1_1trigger_1_1_not_trigger.html#a0d7818e59a8d86e86053bcb6d5d7d2b8',1,'gridfire::trigger::NotTrigger::m_A'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a27f1fd8c8a93576f83a4f3320469c83a',1,'gridfire::trigger::EveryNthTrigger::m_A']]],
+  ['m_5fa_1',['m_a',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a0beb567afdecd85e336b493ff85326bd',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate']]],
+  ['m_5factivereactionindices_2',['m_activeReactionIndices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['m_5factivereactions_3',['m_activeReactions',['../classgridfire_1_1_adaptive_engine_view.html#ab5ab06941bf6d97007d0a76658bf2aa6',1,'gridfire::AdaptiveEngineView::m_activeReactions'],['../classgridfire_1_1_defined_engine_view.html#a824fe65ae22fa856051f2652764a0bb6',1,'gridfire::DefinedEngineView::m_activeReactions']]],
+  ['m_5factivespecies_4',['m_activeSpecies',['../classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940',1,'gridfire::AdaptiveEngineView::m_activeSpecies'],['../classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae',1,'gridfire::DefinedEngineView::m_activeSpecies']]],
+  ['m_5factivespeciesindices_5',['m_activeSpeciesIndices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['m_5falgebraic_5fabundances_6',['m_algebraic_abundances',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a3af2b37ce21829d9554d702cad074470',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['m_5falgebraic_5fspecies_7',['m_algebraic_species',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['m_5fatomic_8',['m_atomic',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a4f2bf61b35566e439ac8a48da265d215',1,'gridfire::rates::weak::WeakReaction']]],
+  ['m_5fatomicreverserates_9',['m_atomicReverseRates',['../classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6',1,'gridfire::GraphEngine']]],
+  ['m_5fb_10',['m_B',['../classgridfire_1_1trigger_1_1_and_trigger.html#af8ee88421d0dfd92de6df96d686ece38',1,'gridfire::trigger::AndTrigger::m_B'],['../classgridfire_1_1trigger_1_1_or_trigger.html#a30dec370b61a5f0562956394b89e8f89',1,'gridfire::trigger::OrTrigger::m_B']]],
+  ['m_5fbaseengine_11',['m_baseEngine',['../classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8',1,'gridfire::AdaptiveEngineView::m_baseEngine'],['../classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195',1,'gridfire::DefinedEngineView::m_baseEngine'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93',1,'gridfire::MultiscalePartitioningEngineView::m_baseEngine']]],
+  ['m_5fcacheconfig_12',['m_cacheConfig',['../structgridfire_1_1_q_s_e_cache_key.html#a711acccecadd93495fd08c81838be2d8',1,'gridfire::QSECacheKey']]],
+  ['m_5fcachestats_13',['m_cacheStats',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['m_5fcallback_14',['m_callback',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50c7b4e1ff2c88ce424c745478414e30',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5fchapter_15',['m_chapter',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#adbcb383bac0f47c66251ee1b7c5f539d',1,'gridfire::reaction::ReaclibReaction']]],
+  ['m_5fconfig_16',['m_config',['../classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18',1,'gridfire::GraphEngine::m_config'],['../classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30',1,'gridfire::AdaptiveEngineView::m_config'],['../classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362',1,'gridfire::FileDefinedEngineView::m_config'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874',1,'gridfire::io::SimpleReactionListFileParser::m_config'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d',1,'gridfire::io::MESANetworkFileParser::m_config'],['../classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09',1,'gridfire::Network::m_config'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a202fe9e6499aac5f6813e036ee4ed2d5',1,'gridfire::solver::CVODESolverStrategy::m_config']]],
+  ['m_5fconstants_17',['m_constants',['../classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e',1,'gridfire::GraphEngine::m_constants'],['../classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410',1,'gridfire::Network::m_constants'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2f0ee4c0d52db0f58781f90dd39dc0f7',1,'gridfire::rates::weak::WeakReaction::m_constants']]],
+  ['m_5fconstraints_18',['m_constraints',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50d8f309ca897fa83b16db0a1701b339',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5fcounter_19',['m_counter',['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a80d6f82095c3b5fdbc46776e183cdb1f',1,'gridfire::trigger::EveryNthTrigger']]],
+  ['m_5fcvode_5fmem_20',['m_cvode_mem',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab5a8fa55e36685cac50c1dbdd8dbfa57',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5fdata_21',['m_data',['../classgridfire_1_1utils_1_1_column.html#aaa99c4d00c3b79e37f2e73e7c6854758',1,'gridfire::utils::Column']]],
+  ['m_5fdepth_22',['m_depth',['../classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01',1,'gridfire::GraphEngine']]],
+  ['m_5fdt0_23',['m_dt0',['../classgridfire_1_1approx8_1_1_approx8_network.html#a6ed8022834e9541b3e547dd867648b0f',1,'gridfire::approx8::Approx8Network']]],
+  ['m_5fdynamic_5fspecies_24',['m_dynamic_species',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['m_5fengine_25',['m_engine',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d',1,'gridfire::GraphEngine::AtomicReverseRate::m_engine'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8',1,'gridfire::solver::NetworkSolverStrategy::m_engine']]],
+  ['m_5feps_5fnuc_26',['m_eps_nuc',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a24207163a7ea2dde675b458f9df37a99',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
+  ['m_5fepsadfun_27',['m_epsADFun',['../classgridfire_1_1_graph_engine.html#a1d5f6a3f217af7f4d0f95bdf7916b774',1,'gridfire::GraphEngine']]],
+  ['m_5ffilename_28',['m_fileName',['../classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b',1,'gridfire::FileDefinedEngineView']]],
+  ['m_5ffilename_29',['m_filename',['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099',1,'gridfire::io::MESANetworkFileParser']]],
+  ['m_5fformat_30',['m_format',['../classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18',1,'gridfire::Network']]],
+  ['m_5ffull_5fjacobian_5fsparsity_5fpattern_31',['m_full_jacobian_sparsity_pattern',['../classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06',1,'gridfire::GraphEngine']]],
+  ['m_5fground_5fstate_5fspin_32',['m_ground_state_spin',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245',1,'gridfire::partition::GroundStatePartitionFunction']]],
+  ['m_5fhash_33',['m_hash',['../structgridfire_1_1_q_s_e_cache_key.html#ab860b40d4ccb3c16a962d96bc767ff05',1,'gridfire::QSECacheKey']]],
+  ['m_5fheader_34',['m_header',['../classgridfire_1_1utils_1_1_column.html#aaddf58469be3e3fd3bee0f4f660fe9e0',1,'gridfire::utils::Column']]],
+  ['m_5fhit_35',['m_hit',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a0c3bd8d5918e344657227a09cd7e39a5',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['m_5fhits_36',['m_hits',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a2b1b4a9ef137e76d39e7a7dcb6cf725d',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_hits'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0d3b7c1d1057f442417c2f8c2a7177c5',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_hits'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aff23db33140aa6a5a2ad36eda77b833d',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_hits'],['../classgridfire_1_1trigger_1_1_and_trigger.html#a43e6a9c01b163ab92a0b413bfba52ef5',1,'gridfire::trigger::AndTrigger::m_hits'],['../classgridfire_1_1trigger_1_1_or_trigger.html#a35d519d5266c68b696b779b275574ebf',1,'gridfire::trigger::OrTrigger::m_hits'],['../classgridfire_1_1trigger_1_1_not_trigger.html#a86404f57e0e0683fc56e0e49321e5e3b',1,'gridfire::trigger::NotTrigger::m_hits'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a021c30d6db015bb88a70af348a5dd336',1,'gridfire::trigger::EveryNthTrigger::m_hits']]],
+  ['m_5fid_37',['m_id',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ca86e0f8f95ffb6d87ca295e44f14c5',1,'gridfire::reaction::ReaclibReaction::m_id'],['../classgridfire_1_1reaction_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111',1,'gridfire::reaction::ReactionSet::m_id'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a79877bd387bd891e602adff3f99cb4c5',1,'gridfire::rates::weak::WeakReaction::m_id'],['../classgridfire_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111',1,'gridfire::ReactionSet::m_id']]],
+  ['m_5findex_38',['m_index',['../structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e',1,'gridfire::expectations::EngineIndexError']]],
+  ['m_5findextospeciesmap_39',['m_indexToSpeciesMap',['../classgridfire_1_1_graph_engine.html#a8ff064c9996772281984f88ee492d04a',1,'gridfire::GraphEngine']]],
+  ['m_5finitial_5fcomp_40',['m_initial_comp',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ac5bf1e4b4ac8435af5739ce970b373d7',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['m_5finterpolator_41',['m_interpolator',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a874efa5a57427c8afecd0375094da6e9',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::m_interpolator'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#adf203cbae7d7afcd274020b5210b426b',1,'gridfire::rates::weak::WeakReaction::m_interpolator']]],
+  ['m_5finterval_42',['m_interval',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab6215873390f6bedab5c9f83b990b5e0',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger']]],
+  ['m_5fisstale_43',['m_isStale',['../classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e',1,'gridfire::AdaptiveEngineView::m_isStale'],['../classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382',1,'gridfire::DefinedEngineView::m_isStale']]],
+  ['m_5fj_44',['m_J',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afd1053d0827512b6831ee15f14488c20',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5fjac_5fwork_45',['m_jac_work',['../classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891',1,'gridfire::GraphEngine']]],
+  ['m_5fjacobianmatrix_46',['m_jacobianMatrix',['../classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910',1,'gridfire::GraphEngine']]],
+  ['m_5flast_5ftrigger_5ftime_47',['m_last_trigger_time',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a51ac3899010c2790fc98801ffba9407e',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger']]],
+  ['m_5flast_5ftrigger_5ftime_5fdelta_48',['m_last_trigger_time_delta',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab93cb25bbebb159a8608a737bd972abd',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger']]],
+  ['m_5flogger_49',['m_logger',['../classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53',1,'gridfire::GraphEngine::m_logger'],['../classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193',1,'gridfire::AdaptiveEngineView::m_logger'],['../classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3',1,'gridfire::DefinedEngineView::m_logger'],['../classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432',1,'gridfire::FileDefinedEngineView::m_logger'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a',1,'gridfire::MultiscalePartitioningEngineView::m_logger'],['../classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d',1,'gridfire::NetworkPrimingEngineView::m_logger'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66',1,'gridfire::io::SimpleReactionListFileParser::m_logger'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937',1,'gridfire::io::MESANetworkFileParser::m_logger'],['../classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5',1,'gridfire::Network::m_logger'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b',1,'gridfire::partition::CompositePartitionFunction::m_logger'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b',1,'gridfire::partition::GroundStatePartitionFunction::m_logger'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6',1,'gridfire::partition::RauscherThielemannPartitionFunction::m_logger'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#abab0ed78925789856ebb119d60c6a53d',1,'gridfire::reaction::ReaclibReaction::m_logger'],['../classgridfire_1_1reaction_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb',1,'gridfire::reaction::ReactionSet::m_logger'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f',1,'gridfire::screening::WeakScreeningModel::m_logger'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5867eb99b00815b8b4f710cb48904dbe',1,'gridfire::solver::CVODESolverStrategy::m_logger'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a16e9b87a8abb05bb6b5410903eb49e91',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_logger'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#afbd9258d65370bbc965e799c82f0e1c0',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_logger'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#abe902b2a42a6451f64497e075b0e0b25',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_logger'],['../classgridfire_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb',1,'gridfire::ReactionSet::m_logger']]],
+  ['m_5flogmanager_50',['m_logManager',['../classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16',1,'gridfire::Network']]],
+  ['m_5fls_51',['m_LS',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af4a2f003a4c4c06b4b72840f2d445f81',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5fmessage_52',['m_message',['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb',1,'gridfire::exceptions::StaleEngineError::m_message'],['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a77c9a660a2748c2e3a1c7e94edad1cf0',1,'gridfire::exceptions::FailedToPartitionEngineError::m_message'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a581527fc03fdd84a8309c147259ec09d',1,'gridfire::exceptions::NetworkResizedError::m_message'],['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047',1,'gridfire::exceptions::UnableToSetNetworkReactionsError::m_message'],['../structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc',1,'gridfire::expectations::EngineError::m_message']]],
+  ['m_5fmiss_53',['m_miss',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a73ca615753553f4a85160bd9f166da5b',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['m_5fmisses_54',['m_misses',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a00ede9fff51a8318913fd2ed504c1007',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_misses'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a14b1884a9014df33a1ec90dd3433c0b9',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_misses'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a021c760717efef3fc3b415dee6d4840b',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_misses'],['../classgridfire_1_1trigger_1_1_and_trigger.html#a1714656e907edfcba2d354ff5d7c9ceb',1,'gridfire::trigger::AndTrigger::m_misses'],['../classgridfire_1_1trigger_1_1_or_trigger.html#ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b',1,'gridfire::trigger::OrTrigger::m_misses'],['../classgridfire_1_1trigger_1_1_not_trigger.html#aa1253080cd57cdf0be6780773ce6c73c',1,'gridfire::trigger::NotTrigger::m_misses'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0a5c2c5aedc779c1535d3839c6a6596e',1,'gridfire::trigger::EveryNthTrigger::m_misses']]],
+  ['m_5fn_55',['m_N',['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a652ba8d1ac36b9713f426eedf2b1ead0',1,'gridfire::trigger::EveryNthTrigger']]],
+  ['m_5fnetworkspecies_56',['m_networkSpecies',['../classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc',1,'gridfire::GraphEngine']]],
+  ['m_5fnetworkspeciesmap_57',['m_networkSpeciesMap',['../classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827',1,'gridfire::GraphEngine']]],
+  ['m_5fnum_5fsteps_58',['m_num_steps',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab7495898e893640670f49308a105658f',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5foperatorhits_59',['m_operatorHits',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac18229250c4c160aada96e19325faa29',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['m_5foperatormisses_60',['m_operatorMisses',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['m_5fparser_61',['m_parser',['../classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500',1,'gridfire::FileDefinedEngineView']]],
+  ['m_5fpartitiondata_62',['m_partitionData',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a50ce19df4c12e22bbcb61422248a4038',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+  ['m_5fpartitionfunction_63',['m_partitionFunction',['../classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e',1,'gridfire::GraphEngine']]],
+  ['m_5fpartitionfunctions_64',['m_partitionFunctions',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8',1,'gridfire::partition::CompositePartitionFunction']]],
+  ['m_5fpename_65',['m_peName',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a51f658789f34f96e0e6bd42cef5cbfe4',1,'gridfire::reaction::ReaclibReaction']]],
+  ['m_5fprecomputedreactions_66',['m_precomputedReactions',['../classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3',1,'gridfire::GraphEngine']]],
+  ['m_5fprimingspecies_67',['m_primingSpecies',['../classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5',1,'gridfire::NetworkPrimingEngineView']]],
+  ['m_5fproduct_68',['m_product',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aee395d13ed3a515d5c1d69bedffca5de',1,'gridfire::rates::weak::WeakReaction']]],
+  ['m_5fproduct_5fa_69',['m_product_a',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2567545c89eb847a15909b02fa0f383e',1,'gridfire::rates::weak::WeakReaction']]],
+  ['m_5fproduct_5fz_70',['m_product_z',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ab1be1d3010ff539b8a911506734fd9cf',1,'gridfire::rates::weak::WeakReaction']]],
+  ['m_5fproducts_71',['m_products',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#ac350a26bdf19d7c1d20db55a226e6063',1,'gridfire::reaction::ReaclibReaction']]],
+  ['m_5fqse_5fabundance_5fcache_72',['m_qse_abundance_cache',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['m_5fqse_5fgroups_73',['m_qse_groups',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['m_5fqse_5fsolve_5fspecies_74',['m_qse_solve_species',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4804c6481c2706b04f48c1bbfd9fd5f8',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['m_5fqse_5fsolve_5fspecies_5findex_5fmap_75',['m_qse_solve_species_index_map',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a23e6ba8dfe37b7f167837296a6654684',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['m_5fqvalue_76',['m_qValue',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a498c202a259cbc315997ec68a2cb8a59',1,'gridfire::reaction::ReaclibReaction']]],
+  ['m_5frate_5ftable_77',['m_rate_table',['../classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a7a01f956eccd3a0a90dd08984ca3f009',1,'gridfire::rates::weak::WeakRateInterpolator']]],
+  ['m_5fratecoefficients_78',['m_rateCoefficients',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ea3de0412395b7b617c4b71cbc2ab68',1,'gridfire::reaction::ReaclibReaction']]],
+  ['m_5frates_79',['m_rates',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#afe1b95bf9d81f7521b9f19bbd1305d01',1,'gridfire::reaction::LogicalReaclibReaction']]],
+  ['m_5freactant_80',['m_reactant',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aeaceef054714e2a9667986406107ba3a',1,'gridfire::rates::weak::WeakReaction']]],
+  ['m_5freactant_5fa_81',['m_reactant_a',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a37dfb1d460e78e81a6def62e7217e6f8',1,'gridfire::rates::weak::WeakReaction']]],
+  ['m_5freactant_5fz_82',['m_reactant_z',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a3d1b52076e102d07acb7200a7ee99165',1,'gridfire::rates::weak::WeakReaction']]],
+  ['m_5freactants_83',['m_reactants',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7cf403bc519ce39a1af886432a653826',1,'gridfire::reaction::ReaclibReaction']]],
+  ['m_5freaction_84',['m_reaction',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a98ed8b450f7868f55e8362a848a4710d',1,'gridfire::GraphEngine::AtomicReverseRate']]],
+  ['m_5freactionidmap_85',['m_reactionIDMap',['../classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3',1,'gridfire::GraphEngine']]],
+  ['m_5freactionindexmap_86',['m_reactionIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de',1,'gridfire::AdaptiveEngineView::m_reactionIndexMap'],['../classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd',1,'gridfire::DefinedEngineView::m_reactionIndexMap']]],
+  ['m_5freactionnamemap_87',['m_reactionNameMap',['../classgridfire_1_1reaction_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44',1,'gridfire::reaction::ReactionSet::m_reactionNameMap'],['../classgridfire_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44',1,'gridfire::ReactionSet::m_reactionNameMap']]],
+  ['m_5freactions_88',['m_reactions',['../classgridfire_1_1_graph_engine.html#ad3b97595871d1f62ee7f4726b601ebef',1,'gridfire::GraphEngine::m_reactions'],['../classgridfire_1_1reaction_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe',1,'gridfire::reaction::ReactionSet::m_reactions'],['../classgridfire_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe',1,'gridfire::ReactionSet::m_reactions']]],
+  ['m_5frelative_89',['m_relative',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa4162916f562b4d7ea0205d6f3e6f917',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger']]],
+  ['m_5fresets_90',['m_resets',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a3004a10bb89ecd7b2ba6103c9f5d4b96',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_resets'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#acd55d04da377c8bf4af3ea2fcf2f1918',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_resets'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad4cc7113574f71905bc93cc40024b4bd',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_resets'],['../classgridfire_1_1trigger_1_1_and_trigger.html#ae3ff88ddb15d04e798fc03c6c941e312',1,'gridfire::trigger::AndTrigger::m_resets'],['../classgridfire_1_1trigger_1_1_or_trigger.html#adc6f560d9199455ba98d85eadfe02847',1,'gridfire::trigger::OrTrigger::m_resets'],['../classgridfire_1_1trigger_1_1_not_trigger.html#adb9c36fa46a30c28e68c59a7d3bd825d',1,'gridfire::trigger::NotTrigger::m_resets'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a87b6e54f3a0536d20709d7e746ec575d',1,'gridfire::trigger::EveryNthTrigger::m_resets']]],
+  ['m_5freverse_91',['m_reverse',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#af52b42d940f6a09dba5d28898d2b0b1f',1,'gridfire::reaction::ReaclibReaction']]],
+  ['m_5frho_92',['m_rho',['../structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63',1,'gridfire::QSECacheKey::m_rho'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::m_rho'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44',1,'gridfire::exceptions::StaleEngineTrigger::state::m_rho']]],
+  ['m_5frhsadfun_93',['m_rhsADFun',['../classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876',1,'gridfire::GraphEngine']]],
+  ['m_5fscreeningmodel_94',['m_screeningModel',['../classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210',1,'gridfire::GraphEngine']]],
+  ['m_5fscreeningtype_95',['m_screeningType',['../classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80',1,'gridfire::GraphEngine']]],
+  ['m_5fsourcelabel_96',['m_sourceLabel',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7e79437a68947e176b8dd7dcbe27baab',1,'gridfire::reaction::ReaclibReaction']]],
+  ['m_5fsources_97',['m_sources',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a8c6f12a01c6d1fdeba1f0cc73128731e',1,'gridfire::reaction::LogicalReaclibReaction']]],
+  ['m_5fspecies_5fcache_98',['m_species_cache',['../class_py_engine.html#a73caaa7606e2cdfd1aa82729a78ebb73',1,'PyEngine::m_species_cache'],['../class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03',1,'PyDynamicEngine::m_species_cache']]],
+  ['m_5fspeciesindexmap_99',['m_speciesIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093',1,'gridfire::AdaptiveEngineView::m_speciesIndexMap'],['../classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e',1,'gridfire::DefinedEngineView::m_speciesIndexMap']]],
+  ['m_5fspeciestoindexmap_100',['m_speciesToIndexMap',['../classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7',1,'gridfire::GraphEngine']]],
+  ['m_5fstate_101',['m_state',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a7f9fa2e34da3772714723ef7d5083be5',1,'gridfire::exceptions::StaleEngineTrigger']]],
+  ['m_5fstdout_5flogging_5fenabled_102',['m_stdout_logging_enabled',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af3e470b5a6f982c107785c64b169a992',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5fstiff_103',['m_stiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#a697cb49bebc8d0659eb791500c451c67',1,'gridfire::approx8::Approx8Network::m_stiff'],['../classgridfire_1_1_network.html#aefe364ae5af783e19e7b93bfd475566e',1,'gridfire::Network::m_stiff']]],
+  ['m_5fstoichiometrymatrix_104',['m_stoichiometryMatrix',['../classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24',1,'gridfire::GraphEngine']]],
+  ['m_5fsun_5fctx_105',['m_sun_ctx',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ac57a4f62d95d769c379470e680e6882d',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5ft_106',['m_t',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a352cd33629e63286808df617d36cb70b',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
+  ['m_5ft9_107',['m_T9',['../structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7',1,'gridfire::QSECacheKey::m_T9'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::m_T9'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963',1,'gridfire::exceptions::StaleEngineTrigger::state::m_T9']]],
+  ['m_5fthreshold_108',['m_threshold',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#aeac341c1e854d561a29aa39ad306d5d7',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_threshold'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ab7d86e5c89a848cf238141393fe3a8de',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_threshold']]],
+  ['m_5ftimestep_5fwindow_109',['m_timestep_window',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ae18e08a0bd72b68605d64e4d84355f79',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger']]],
+  ['m_5ftmax_110',['m_tMax',['../classgridfire_1_1approx8_1_1_approx8_network.html#a6fadf388f07c160f1887a3cb72eaa869',1,'gridfire::approx8::Approx8Network']]],
+  ['m_5ftotal_5fsteps_111',['m_total_steps',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#ac1cddf0f2955d4282afcf4a90a2de9c0',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
+  ['m_5ftype_112',['m_type',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae78d2a9b20c22a6ad624f4d968cbf639',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::m_type'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a92c3590161c63c6ed4e7650d2b7beee3',1,'gridfire::rates::weak::WeakReaction::m_type']]],
+  ['m_5fupdates_113',['m_updates',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab80799eb7c80b3b20c1a7e7f9e1f5030',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_updates'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a4885bdcc719a0f8c8394905893739b96',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_updates'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a25f6ac369c590a8370270bdc70545171',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_updates'],['../classgridfire_1_1trigger_1_1_and_trigger.html#a7f88c1139e1b05baed44614104d601b4',1,'gridfire::trigger::AndTrigger::m_updates'],['../classgridfire_1_1trigger_1_1_or_trigger.html#af595a5daab0f5b3ffc450c6de6737517',1,'gridfire::trigger::OrTrigger::m_updates'],['../classgridfire_1_1trigger_1_1_not_trigger.html#ae4830ed152643770b0888b040475b000',1,'gridfire::trigger::NotTrigger::m_updates'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#ab0a33f49be02d34b27f75edf75dbc06d',1,'gridfire::trigger::EveryNthTrigger::m_updates']]],
+  ['m_5fuseprecomputation_114',['m_usePrecomputation',['../classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de',1,'gridfire::GraphEngine']]],
+  ['m_5fusereversereactions_115',['m_useReverseReactions',['../classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc',1,'gridfire::GraphEngine']]],
+  ['m_5fview_116',['m_view',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['m_5fweak_5fnetwork_117',['m_weak_network',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a8169adef9b4b3c7552c7a8fdc945cf6f',1,'gridfire::rates::weak::WeakReactionMap']]],
+  ['m_5fweakrateinterpolator_118',['m_weakRateInterpolator',['../classgridfire_1_1_graph_engine.html#a9ac5893030802b0b846552949e866340',1,'gridfire::GraphEngine']]],
+  ['m_5fwindowsize_119',['m_windowSize',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa03c13813065f720cf698c240f07d559',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger']]],
+  ['m_5fy_120',['m_Y',['../structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a',1,'gridfire::QSECacheKey::m_Y'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf',1,'gridfire::exceptions::StaleEngineTrigger::state::m_Y'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aae19c1ec467051404a7bf1d4c7066c22',1,'gridfire::solver::CVODESolverStrategy::m_Y']]],
+  ['m_5fy_121',['m_y',['../classgridfire_1_1approx8_1_1_approx8_network.html#abf9f13ff532917ddac4a7d987698836d',1,'gridfire::approx8::Approx8Network']]],
+  ['m_5fy_5fscale_122',['m_Y_scale',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['m_5fyerr_123',['m_YErr',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a0717afcde6fdb71b12490bbcadb5fdb4',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5fz_124',['m_z',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a292dfe5fdfd3b90a36906f5f609a4c1c',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate']]],
+  ['mainpage_2emd_125',['mainpage.md',['../mainpage_8md.html',1,'']]],
+  ['make_5fkey_126',['make_key',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0e75ec9b97529783e07953aaf7d70f68',1,'gridfire::partition::GroundStatePartitionFunction::make_key()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec',1,'gridfire::partition::RauscherThielemannPartitionFunction::make_key()']]],
+  ['makeenginepartitioningtrigger_127',['makeEnginePartitioningTrigger',['../namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html#a26555ea09be620dabc5f9644be8f9908',1,'gridfire::trigger::solver::CVODE']]],
+  ['manual_20build_20instructions_128',['Manual Build Instructions',['../index.html#autotoc_md11',1,'']]],
+  ['mapculledtofull_129',['mapCulledToFull',['../classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1',1,'gridfire::AdaptiveEngineView']]],
+  ['mapculledtofullreactionindex_130',['mapCulledToFullReactionIndex',['../classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101',1,'gridfire::AdaptiveEngineView']]],
+  ['mapculledtofullspeciesindex_131',['mapCulledToFullSpeciesIndex',['../classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8',1,'gridfire::AdaptiveEngineView']]],
+  ['mapfulltoculled_132',['mapFullToCulled',['../classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44',1,'gridfire::AdaptiveEngineView']]],
+  ['mapfulltoview_133',['mapFullToView',['../classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873',1,'gridfire::DefinedEngineView']]],
+  ['mapnetintomolarabundancevector_134',['mapNetInToMolarAbundanceVector',['../classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a',1,'gridfire::DynamicEngine::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f',1,'gridfire::GraphEngine::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019',1,'gridfire::AdaptiveEngineView::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2',1,'gridfire::DefinedEngineView::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0',1,'gridfire::MultiscalePartitioningEngineView::mapNetInToMolarAbundanceVector()'],['../class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac',1,'PyDynamicEngine::mapNetInToMolarAbundanceVector()']]],
+  ['mapviewtofull_135',['mapViewToFull',['../classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843',1,'gridfire::DefinedEngineView']]],
+  ['mapviewtofullreactionindex_136',['mapViewToFullReactionIndex',['../classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1',1,'gridfire::DefinedEngineView']]],
+  ['mapviewtofullspeciesindex_137',['mapViewToFullSpeciesIndex',['../classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a',1,'gridfire::DefinedEngineView']]],
+  ['massfractionchanges_138',['massFractionChanges',['../structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7',1,'gridfire::PrimingReport']]],
+  ['matrix_5ftype_139',['matrix_type',['../namespacegridfire_1_1approx8.html#a275aecf94e3145c2ff3d1756deda54ce',1,'gridfire::approx8']]],
+  ['max_5fiterations_5freached_140',['MAX_ITERATIONS_REACHED',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287',1,'gridfire']]],
+  ['mean_5ftimescale_141',['mean_timescale',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+  ['mesanetworkfileparser_142',['MESANetworkFileParser',['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html',1,'gridfire::io::MESANetworkFileParser'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c',1,'gridfire::io::MESANetworkFileParser::MESANetworkFileParser()']]],
+  ['meson_20setup_143',['TUI config loading and meson setup',['../index.html#autotoc_md20',1,'']]],
+  ['method_144',['DirectNetworkSolver (Implicit Rosenbrock Method)',['../index.html#autotoc_md41',1,'']]],
+  ['mev2erg_145',['MeV2Erg',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ae527298ffcdeb0b7b4089eeed4ddb58d',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['mevgrelation_146',['MeVgRelation',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab60f42677de82f3aab77d2af846c2ffd',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['mevpergraph_147',['MeVPerGraph',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a57273916131b68d1aed6e16d85667427',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['middle_148',['MIDDLE',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+  ['min_5fabundance_5fthreshold_149',['MIN_ABUNDANCE_THRESHOLD',['../namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06',1,'gridfire']]],
+  ['min_5fdensity_5fthreshold_150',['MIN_DENSITY_THRESHOLD',['../namespacegridfire.html#ada3c137c014ecd8d06200fea2d1a9f50',1,'gridfire']]],
+  ['min_5fjacobian_5fthreshold_151',['MIN_JACOBIAN_THRESHOLD',['../namespacegridfire.html#ae01b1738df1921db565bcbd68dd6cf64',1,'gridfire']]],
+  ['minimum_20compiler_20versions_152',['Minimum compiler versions',['../index.html#autotoc_md26',1,'']]],
+  ['mion_153',['mIon',['../structgridfire_1_1approx8_1_1_approx8_net.html#a928b7810cb2993d59d40aa73c2faef18',1,'gridfire::approx8::Approx8Net']]],
+  ['miss_154',['miss',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac55fb580dd4b9763cefe4612555b03f3',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['misses_155',['misses',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5df4f2c27e9eaa781c972a8c9b595787',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['molarabundance_156',['MolarAbundance',['../structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65',1,'gridfire::NetIn']]],
+  ['mu_5fe_157',['mu_e',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ac08d42071950006ccf3c438253ef9ee9',1,'gridfire::rates::weak::RateDataRow::mu_e'],['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a4a1cbc93d5e197a69a5a29a8cabc6498',1,'gridfire::rates::weak::WeakReactionEntry::mu_e']]],
+  ['mue_158',['MUE',['../namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea5257ed2407fcbb45ab05897fdea80c2b',1,'gridfire::rates::weak']]],
+  ['mue_5faxis_159',['mue_axis',['../structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a82cc218ce48dcb835d07422dad927a5a',1,'gridfire::rates::weak::IsotopeGrid']]],
+  ['multiscalepartitioningengineview_160',['MultiscalePartitioningEngineView',['../classgridfire_1_1_multiscale_partitioning_engine_view.html',1,'gridfire::MultiscalePartitioningEngineView'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f',1,'gridfire::MultiscalePartitioningEngineView::MultiscalePartitioningEngineView()']]],
+  ['multiscalepartitioningengineview_20example_161',['MultiscalePartitioningEngineView Example',['../engine_8h.html#MultiscalePartitioningEngineViewExample',1,'']]],
+  ['muon_5fantineutrino_162',['MUON_ANTINEUTRINO',['../namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caae6f2e17ddd61e72e331faf8700bbedef',1,'gridfire::rates::weak']]],
+  ['muon_5fneutrino_163',['MUON_NEUTRINO',['../namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caaabd6fefb3f84f632c3968acfcd76d554',1,'gridfire::rates::weak']]]
 ];
diff --git a/docs/html/search/all_13.js b/docs/html/search/all_13.js
index 415b7b43..3d9c0fe2 100644
--- a/docs/html/search/all_13.js
+++ b/docs/html/search/all_13.js
@@ -6,35 +6,42 @@ var searchData=
   ['n15pg_5ffrac_3',['n15pg_frac',['../namespacegridfire_1_1approx8.html#ac309c160c806208bf01bebeb29c23896',1,'gridfire::approx8']]],
   ['n15pg_5frate_4',['n15pg_rate',['../namespacegridfire_1_1approx8.html#acdbb3ee2ef22bfd9c836324285d0da98',1,'gridfire::approx8']]],
   ['na_5',['Na',['../structgridfire_1_1_graph_engine_1_1constants.html#a5ccc874d6704615e0ce54c14dc67699d',1,'gridfire::GraphEngine::constants']]],
-  ['ne20a_5frate_6',['ne20a_rate',['../namespacegridfire_1_1approx8.html#ad7a6f894fa4bdeebb4cae0eba3b2c210',1,'gridfire::approx8']]],
-  ['netin_7',['NetIn',['../structgridfire_1_1_net_in.html',1,'gridfire::NetIn'],['../index.html#autotoc_md39',1,'NetIn']]],
-  ['netin_20and_20netout_8',['NetIn and NetOut',['../index.html#autotoc_md38',1,'']]],
-  ['netout_9',['NetOut',['../index.html#autotoc_md38',1,'NetIn and NetOut'],['../structgridfire_1_1_net_out.html',1,'gridfire::NetOut'],['../index.html#autotoc_md40',1,'NetOut']]],
-  ['network_10',['Network',['../classgridfire_1_1_network.html',1,'gridfire::Network'],['../classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55',1,'gridfire::Network::Network()']]],
-  ['network_20view_11',['Adaptive Network View',['../index.html#autotoc_md48',1,'']]],
-  ['network_2ecpp_12',['network.cpp',['../network_8cpp.html',1,'']]],
-  ['network_2eh_13',['network.h',['../network_8h.html',1,'']]],
-  ['network_5ffile_2ecpp_14',['network_file.cpp',['../network__file_8cpp.html',1,'']]],
-  ['network_5ffile_2eh_15',['network_file.h',['../network__file_8h.html',1,'']]],
-  ['networkbuilddepth_16',['NetworkBuildDepth',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57',1,'gridfire']]],
-  ['networkfileparser_17',['NetworkFileParser',['../classgridfire_1_1io_1_1_network_file_parser.html',1,'gridfire::io']]],
-  ['networkformat_18',['NetworkFormat',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37',1,'gridfire']]],
-  ['networkprimingengineview_19',['NetworkPrimingEngineView',['../classgridfire_1_1_network_priming_engine_view.html',1,'gridfire::NetworkPrimingEngineView'],['../classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177',1,'gridfire::NetworkPrimingEngineView::NetworkPrimingEngineView(const std::string &amp;primingSymbol, DynamicEngine &amp;baseEngine)'],['../classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6',1,'gridfire::NetworkPrimingEngineView::NetworkPrimingEngineView(const fourdst::atomic::Species &amp;primingSpecies, DynamicEngine &amp;baseEngine)']]],
-  ['networkprimingengineview_20example_20',['NetworkPrimingEngineView Example',['../engine_8h.html#NetworkPrimingEngineViewExample',1,'']]],
-  ['networkresizederror_21',['NetworkResizedError',['../classgridfire_1_1exceptions_1_1_network_resized_error.html',1,'gridfire::exceptions::NetworkResizedError'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a80c0adb088e8083309591d24051b056b',1,'gridfire::exceptions::NetworkResizedError::NetworkResizedError()']]],
-  ['networks_22',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md68',1,'']]],
-  ['networksolverstrategy_23',['NetworkSolverStrategy',['../classgridfire_1_1solver_1_1_network_solver_strategy.html',1,'gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505',1,'gridfire::solver::NetworkSolverStrategy::NetworkSolverStrategy()']]],
-  ['networksolverstrategy_20lt_20enginet_20gt_20_3a_24',['NetworkSolverStrategy&amp;lt;EngineT&amp;gt;:',['../index.html#autotoc_md37',1,'']]],
-  ['networksolverstrategy_3c_20dynamicengine_20_3e_25',['NetworkSolverStrategy&lt; DynamicEngine &gt;',['../classgridfire_1_1solver_1_1_network_solver_strategy.html',1,'gridfire::solver']]],
-  ['networkspecies_26',['networkSpecies',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#afee439e7b59805a6b4dcffffa2b0e6e3',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['niso_27',['nIso',['../structgridfire_1_1approx8_1_1_approx8_net.html#a31928b4041479da6515a90569322fc02',1,'gridfire::approx8::Approx8Net']]],
-  ['no_5fspecies_5fto_5fprime_28',['NO_SPECIES_TO_PRIME',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45',1,'gridfire']]],
-  ['normalized_5fg_5fvalues_29',['normalized_g_values',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aea71e9198606e0ba393321178f988fcc',1,'gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData::normalized_g_values'],['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a64c1cef58c1bdeab1fcc7f9a30a71609',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord::normalized_g_values']]],
-  ['note_20about_20composability_30',['A Note about composability',['../index.html#autotoc_md35',1,'']]],
-  ['nuclearenergygenerationrate_31',['nuclearEnergyGenerationRate',['../structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008',1,'gridfire::StepDerivatives']]],
-  ['num_5fspecies_32',['num_species',['../classgridfire_1_1reaction_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97',1,'gridfire::reaction::Reaction::num_species()'],['../classgridfire_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97',1,'gridfire::Reaction::num_species()']]],
-  ['num_5fsteps_33',['num_steps',['../structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6',1,'gridfire::NetOut::num_steps'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a85eab3fb76bcef5044b2be6cc60a46df',1,'gridfire::solver::DirectNetworkSolver::TimestepContext::num_steps']]],
-  ['numerical_20solver_20strategies_34',['Numerical Solver Strategies',['../index.html#autotoc_md36',1,'']]],
-  ['numspecies_35',['numSpecies',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c',1,'gridfire::exceptions::StaleEngineTrigger']]],
-  ['nvar_36',['nVar',['../structgridfire_1_1approx8_1_1_approx8_net.html#a7218aa9b3dbe7c6eca52119e115692db',1,'gridfire::approx8::Approx8Net']]]
+  ['name_6',['name',['../structgridfire_1_1trigger_1_1_trigger_result.html#a1f27dd6d5cca43956812ec78cfb7be2d',1,'gridfire::trigger::TriggerResult::name'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a87fc9fe6bd8762f148c858452ec30043',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::name()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a594893c029f044be3119118808470f7a',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::name()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a290e5643eea08726d2fd44a1cd5617d0',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::name()'],['../classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7',1,'gridfire::trigger::Trigger::name()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#ab78539e5cd88194ab9e98434793eae3f',1,'gridfire::trigger::AndTrigger::name()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#a062af4f567dc48c088f1fcfb64cc79ec',1,'gridfire::trigger::OrTrigger::name()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#acc3bd2938f7746997fb1d255681d8b20',1,'gridfire::trigger::NotTrigger::name()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a4a834d24286f9204995bf78fb69f35dc',1,'gridfire::trigger::EveryNthTrigger::name()']]],
+  ['ne20a_5frate_7',['ne20a_rate',['../namespacegridfire_1_1approx8.html#ad7a6f894fa4bdeebb4cae0eba3b2c210',1,'gridfire::approx8']]],
+  ['netin_8',['NetIn',['../structgridfire_1_1_net_in.html',1,'gridfire::NetIn'],['../index.html#autotoc_md39',1,'NetIn']]],
+  ['netin_20and_20netout_9',['NetIn and NetOut',['../index.html#autotoc_md38',1,'']]],
+  ['netout_10',['NetOut',['../index.html#autotoc_md38',1,'NetIn and NetOut'],['../structgridfire_1_1_net_out.html',1,'gridfire::NetOut'],['../index.html#autotoc_md40',1,'NetOut']]],
+  ['network_11',['Network',['../classgridfire_1_1_network.html',1,'gridfire::Network'],['../classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55',1,'gridfire::Network::Network()']]],
+  ['network_20view_12',['Adaptive Network View',['../index.html#autotoc_md48',1,'']]],
+  ['network_2ecpp_13',['network.cpp',['../network_8cpp.html',1,'']]],
+  ['network_2eh_14',['network.h',['../network_8h.html',1,'']]],
+  ['network_5ffile_2ecpp_15',['network_file.cpp',['../network__file_8cpp.html',1,'']]],
+  ['network_5ffile_2eh_16',['network_file.h',['../network__file_8h.html',1,'']]],
+  ['networkbuilddepth_17',['NetworkBuildDepth',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57',1,'gridfire']]],
+  ['networkfileparser_18',['NetworkFileParser',['../classgridfire_1_1io_1_1_network_file_parser.html',1,'gridfire::io']]],
+  ['networkformat_19',['NetworkFormat',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37',1,'gridfire']]],
+  ['networkprimingengineview_20',['NetworkPrimingEngineView',['../classgridfire_1_1_network_priming_engine_view.html',1,'gridfire::NetworkPrimingEngineView'],['../classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177',1,'gridfire::NetworkPrimingEngineView::NetworkPrimingEngineView(const std::string &amp;primingSymbol, DynamicEngine &amp;baseEngine)'],['../classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6',1,'gridfire::NetworkPrimingEngineView::NetworkPrimingEngineView(const fourdst::atomic::Species &amp;primingSpecies, DynamicEngine &amp;baseEngine)']]],
+  ['networkprimingengineview_20example_21',['NetworkPrimingEngineView Example',['../engine_8h.html#NetworkPrimingEngineViewExample',1,'']]],
+  ['networkresizederror_22',['NetworkResizedError',['../classgridfire_1_1exceptions_1_1_network_resized_error.html',1,'gridfire::exceptions::NetworkResizedError'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a80c0adb088e8083309591d24051b056b',1,'gridfire::exceptions::NetworkResizedError::NetworkResizedError()']]],
+  ['networks_23',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md68',1,'']]],
+  ['networksolverstrategy_24',['NetworkSolverStrategy',['../classgridfire_1_1solver_1_1_network_solver_strategy.html',1,'gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505',1,'gridfire::solver::NetworkSolverStrategy::NetworkSolverStrategy()']]],
+  ['networksolverstrategy_20lt_20enginet_20gt_20_3a_25',['NetworkSolverStrategy&amp;lt;EngineT&amp;gt;:',['../index.html#autotoc_md37',1,'']]],
+  ['networksolverstrategy_3c_20dynamicengine_20_3e_26',['NetworkSolverStrategy&lt; DynamicEngine &gt;',['../classgridfire_1_1solver_1_1_network_solver_strategy.html',1,'gridfire::solver']]],
+  ['networkspecies_27',['networkSpecies',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a75d7e32c9df3d8a047069fe2d64cd089',1,'gridfire::solver::CVODESolverStrategy::TimestepContext::networkSpecies'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a41a5bc46358cb59373f62c791e1bc29c',1,'gridfire::solver::CVODESolverStrategy::CVODEUserData::networkSpecies']]],
+  ['neutrinotypes_28',['NeutrinoTypes',['../namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70ca',1,'gridfire::rates::weak']]],
+  ['neutronmassg_29',['neutronMassG',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a2d6c6d4eb9b54c050c266298611c1e44',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['neutronmassmev_30',['neutronMassMeV',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a0629ea0e5d51166e400696a358b0045e',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['niso_31',['nIso',['../structgridfire_1_1approx8_1_1_approx8_net.html#a31928b4041479da6515a90569322fc02',1,'gridfire::approx8::Approx8Net']]],
+  ['no_5fspecies_5fto_5fprime_32',['NO_SPECIES_TO_PRIME',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45',1,'gridfire']]],
+  ['normalized_5fg_5fvalues_33',['normalized_g_values',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aea71e9198606e0ba393321178f988fcc',1,'gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData::normalized_g_values'],['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a64c1cef58c1bdeab1fcc7f9a30a71609',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord::normalized_g_values']]],
+  ['note_20about_20composability_34',['A Note about composability',['../index.html#autotoc_md35',1,'']]],
+  ['nottrigger_35',['NotTrigger',['../classgridfire_1_1trigger_1_1_not_trigger.html',1,'gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;'],['../classgridfire_1_1trigger_1_1_not_trigger.html#a4828599aae5ff37f4c82e51fe192bed3',1,'gridfire::trigger::NotTrigger::NotTrigger()']]],
+  ['nuclearenergygenerationrate_36',['nuclearEnergyGenerationRate',['../structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008',1,'gridfire::StepDerivatives']]],
+  ['num_5fspecies_37',['num_species',['../classgridfire_1_1reaction_1_1_reaction.html#ae2a1b0395ac127c792a8049cd0bcc249',1,'gridfire::reaction::Reaction::num_species()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a9205126955ad38f56e8aca3112bc150a',1,'gridfire::reaction::ReaclibReaction::num_species()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1210917ca1727ea474bb606cf8279edb',1,'gridfire::rates::weak::WeakReaction::num_species()'],['../classgridfire_1_1_reaction.html#a348aae35a6c82194ef5387278419e0e6',1,'gridfire::Reaction::num_species()']]],
+  ['num_5fsteps_38',['num_steps',['../structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6',1,'gridfire::NetOut::num_steps'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a51e86d2721053055d8479662b864e367',1,'gridfire::solver::CVODESolverStrategy::TimestepContext::num_steps']]],
+  ['numerical_20solver_20strategies_39',['Numerical Solver Strategies',['../index.html#autotoc_md36',1,'']]],
+  ['nummisses_40',['numMisses',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a273eb8a3e80d1235d2b3f252e55c5b50',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::numMisses()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0e1ad148f9f3232992a4b16e440c249a',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::numMisses()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a94bb1de08a5ff55e1874f595f8c8965c',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::numMisses()'],['../classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7',1,'gridfire::trigger::Trigger::numMisses()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#addfd61f8cb234881f535fb8f4d618d74',1,'gridfire::trigger::AndTrigger::numMisses()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#a0b3a7f45604dbb27e832d9559dd20997',1,'gridfire::trigger::OrTrigger::numMisses()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#a2f9b0d6a6ac54f6371c5a208c06826ea',1,'gridfire::trigger::NotTrigger::numMisses()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae7776f4a526db3245e64a74a3b0172d3',1,'gridfire::trigger::EveryNthTrigger::numMisses()']]],
+  ['numspecies_41',['numSpecies',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c',1,'gridfire::exceptions::StaleEngineTrigger']]],
+  ['numtriggers_42',['numTriggers',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a34d285584ea96f71b99eefad8c738296',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::numTriggers()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a32980aaf6d9c7632c024b4b74b1d9e70',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::numTriggers()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad2a7c2567b100f97a024f65818ecefed',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::numTriggers()'],['../classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d',1,'gridfire::trigger::Trigger::numTriggers()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#afffb4281569963183d7db3ed1568eb3a',1,'gridfire::trigger::AndTrigger::numTriggers()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#afc7d3eae8306ee383d76997ac3803327',1,'gridfire::trigger::OrTrigger::numTriggers()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#ae2d27d72af9e1fbf711a58e4583b43a3',1,'gridfire::trigger::NotTrigger::numTriggers()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a7e5568c9d7799b7f80ad0d3efe2cd143',1,'gridfire::trigger::EveryNthTrigger::numTriggers()']]],
+  ['nvar_43',['nVar',['../structgridfire_1_1approx8_1_1_approx8_net.html#a7218aa9b3dbe7c6eca52119e115692db',1,'gridfire::approx8::Approx8Net']]]
 ];
diff --git a/docs/html/search/all_14.js b/docs/html/search/all_14.js
index 1c2e8bff..77bbe6e3 100644
--- a/docs/html/search/all_14.js
+++ b/docs/html/search/all_14.js
@@ -2,23 +2,24 @@ var searchData=
 [
   ['o16a_5frate_0',['o16a_rate',['../namespacegridfire_1_1approx8.html#a7387008e672ea12d277e2194745a4c93',1,'gridfire::approx8']]],
   ['o16p_5frate_1',['o16p_rate',['../namespacegridfire_1_1approx8.html#a62c2f567dc1ada3816843c8586aad0dc',1,'gridfire::approx8']]],
-  ['observe_2',['observe',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a226b007bfc9960b5c0bb7b88b4f122da',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
-  ['ode_3',['ODE',['../structgridfire_1_1approx8_1_1_o_d_e.html',1,'gridfire::approx8']]],
-  ['of_20installation_4',['Ease of Installation',['../index.html#autotoc_md16',1,'']]],
+  ['ode_2',['ODE',['../structgridfire_1_1approx8_1_1_o_d_e.html',1,'gridfire::approx8']]],
+  ['of_20installation_3',['Ease of Installation',['../index.html#autotoc_md16',1,'']]],
+  ['offdiagonaltrigger_4',['OffDiagonalTrigger',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a6dc334b85ffb822880c6740dc457ea52',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::OffDiagonalTrigger()']]],
   ['on_20common_20platforms_5',['Dependency Installation on Common Platforms',['../index.html#autotoc_md22',1,'']]],
   ['operator_20std_3a_3astring_6',['string',['../structgridfire_1_1expectations_1_1_stale_engine_error.html#ad8ba0f62a2da0d93aba429181e7e6f84',1,'gridfire::expectations::StaleEngineError']]],
-  ['operator_21_3d_7',['operator!=',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup::operator!=()'],['../classgridfire_1_1reaction_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51',1,'gridfire::reaction::Reaction::operator!=()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#aac76ec883b4ecebb2a94b2485dae7105',1,'gridfire::reaction::TemplatedReactionSet::operator!=()'],['../classgridfire_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51',1,'gridfire::Reaction::operator!=()']]],
-  ['operator_28_29_8',['operator()',['../structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa',1,'gridfire::approx8::Jacobian::operator()()'],['../structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0',1,'gridfire::approx8::ODE::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3',1,'std::hash&lt; gridfire::QSECacheKey &gt;::operator()()'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::operator()()'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aec8c0a0b2fbb71cebb40c263f64385b3',1,'gridfire::solver::DirectNetworkSolver::RHSManager::operator()()'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9',1,'std::hash&lt; gridfire::reaction::Reaction &gt;::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921',1,'std::hash&lt; gridfire::reaction::ReactionSet &gt;::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html#a4b76e7119050266952ded94d6f0544cb',1,'std::hash&lt; gridfire::reaction::LogicalReactionSet &gt;::operator()()']]],
+  ['operator_21_3d_7',['operator!=',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup::operator!=()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8b6008e0f629329bfc62256f4f081b77',1,'gridfire::reaction::ReaclibReaction::operator!=()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8',1,'gridfire::reaction::ReactionSet::operator!=()'],['../classgridfire_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8',1,'gridfire::ReactionSet::operator!=()']]],
+  ['operator_28_29_8',['operator()',['../structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa',1,'gridfire::approx8::Jacobian::operator()()'],['../structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0',1,'gridfire::approx8::ODE::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3',1,'std::hash&lt; gridfire::QSECacheKey &gt;::operator()()'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9',1,'std::hash&lt; gridfire::reaction::Reaction &gt;::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921',1,'std::hash&lt; gridfire::reaction::ReactionSet &gt;::operator()()']]],
   ['operator_3c_9',['operator&lt;',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
-  ['operator_3c_3c_10',['operator&lt;&lt;',['../structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736',1,'gridfire::PrimingReport::operator&lt;&lt;()'],['../structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7',1,'gridfire::expectations::EngineError::operator&lt;&lt;()'],['../structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903',1,'gridfire::expectations::EngineIndexError::operator&lt;&lt;()'],['../structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b',1,'gridfire::NetOut::operator&lt;&lt;()'],['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f',1,'gridfire::reaction::RateCoefficientSet::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8',1,'gridfire::reaction::Reaction::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a10cbea11653524dae2f7eafb5c22c90f',1,'gridfire::reaction::LogicalReaction::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a47265467dbf2c324ce3e4c85ebbaa6a7',1,'gridfire::reaction::TemplatedReactionSet::operator&lt;&lt;()'],['../classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8',1,'gridfire::Reaction::operator&lt;&lt;()'],['../namespacegridfire_1_1reaclib.html#a6bb94d5adc7bb9db5a67f770f7453e63',1,'gridfire::reaclib::operator&lt;&lt;()']]],
-  ['operator_3d_11',['operator=',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac510dce14a6033551318c0c7b241f3c8',1,'gridfire::reaction::TemplatedReactionSet']]],
-  ['operator_3d_3d_12',['operator==',['../structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81',1,'gridfire::QSECacheKey::operator==()'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup::operator==()'],['../classgridfire_1_1reaction_1_1_reaction.html#ac426457cf0a54a15b206549422083bac',1,'gridfire::reaction::Reaction::operator==()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a128660f5fbc67054f73811ed2982d24d',1,'gridfire::reaction::TemplatedReactionSet::operator==()'],['../classgridfire_1_1_reaction.html#ac426457cf0a54a15b206549422083bac',1,'gridfire::Reaction::operator==()']]],
+  ['operator_3c_3c_10',['operator&lt;&lt;',['../structgridfire_1_1_energy_derivatives.html#aa974abdff7fe09c9aea3fcf4ae13b652',1,'gridfire::EnergyDerivatives::operator&lt;&lt;()'],['../structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736',1,'gridfire::PrimingReport::operator&lt;&lt;()'],['../structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7',1,'gridfire::expectations::EngineError::operator&lt;&lt;()'],['../structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903',1,'gridfire::expectations::EngineIndexError::operator&lt;&lt;()'],['../structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b',1,'gridfire::NetOut::operator&lt;&lt;()'],['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f',1,'gridfire::reaction::RateCoefficientSet::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8',1,'gridfire::reaction::Reaction::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae24ad1e38daab536aec6ac72c67e8615',1,'gridfire::reaction::ReaclibReaction::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a495ca800cc1dd224ce2a821a825afafd',1,'gridfire::reaction::LogicalReaclibReaction::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20',1,'gridfire::reaction::ReactionSet::operator&lt;&lt;()'],['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a5a2525ca7e7b2c812b1f67b3b0114aaf',1,'gridfire::rates::weak::WeakReactionEntry::operator&lt;&lt;()'],['../classgridfire_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20',1,'gridfire::ReactionSet::operator&lt;&lt;()'],['../classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8',1,'gridfire::Reaction::operator&lt;&lt;()'],['../namespacegridfire_1_1reaclib.html#a6bb94d5adc7bb9db5a67f770f7453e63',1,'gridfire::reaclib::operator&lt;&lt;()']]],
+  ['operator_3d_11',['operator=',['../classgridfire_1_1reaction_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a',1,'gridfire::reaction::ReactionSet::operator=()'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af500df838024c82724eaf7fe1cb9b8e8',1,'gridfire::solver::CVODESolverStrategy::operator=(const CVODESolverStrategy &amp;)=delete'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ad26879fafcee9ecb21cc7c5ac0db1692',1,'gridfire::solver::CVODESolverStrategy::operator=(CVODESolverStrategy &amp;&amp;)=delete'],['../classgridfire_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a',1,'gridfire::ReactionSet::operator=()']]],
+  ['operator_3d_3d_12',['operator==',['../structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81',1,'gridfire::QSECacheKey::operator==()'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup::operator==()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae7c930525db447e39b4de18fbc1251a8',1,'gridfire::reaction::ReaclibReaction::operator==()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135',1,'gridfire::reaction::ReactionSet::operator==()'],['../classgridfire_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135',1,'gridfire::ReactionSet::operator==()']]],
   ['operator_3e_13',['operator&gt;',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
-  ['operator_5b_5d_14',['operator[]',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a638067a3e55ec2a422206055881aaaad',1,'gridfire::reaction::TemplatedReactionSet::operator[](size_t index) const'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a13e003529a17fa61aafdce3abd2dc773',1,'gridfire::reaction::TemplatedReactionSet::operator[](const std::string_view &amp;id) const']]],
+  ['operator_5b_5d_14',['operator[]',['../classgridfire_1_1reaction_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b',1,'gridfire::reaction::ReactionSet::operator[](size_t index) const'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a896b4e492ef596d9174aeda4b59c46cd',1,'gridfire::reaction::ReactionSet::operator[](const std::string_view &amp;id) const'],['../classgridfire_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b',1,'gridfire::ReactionSet::operator[](size_t index) const'],['../classgridfire_1_1_reaction_set.html#a896b4e492ef596d9174aeda4b59c46cd',1,'gridfire::ReactionSet::operator[](const std::string_view &amp;id) const']]],
   ['operators_15',['operators',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
   ['operatorsnamemap_16',['operatorsNameMap',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afb930f4472f4bb713f0b606194762c6f',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
   ['optional_17',['Optional',['../index.html#autotoc_md14',1,'']]],
   ['options_18',['GraphEngine Configuration Options',['../index.html#autotoc_md30',1,'']]],
-  ['other_19',['Other',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['outputtype_20',['OutputType',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]]
+  ['ortrigger_19',['OrTrigger',['../classgridfire_1_1trigger_1_1_or_trigger.html',1,'gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;'],['../classgridfire_1_1trigger_1_1_or_trigger.html#aaf4f8a090bdd10eeba0b7849fa8ed888',1,'gridfire::trigger::OrTrigger::OrTrigger()']]],
+  ['other_20',['Other',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['outputtype_21',['OutputType',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]]
 ];
diff --git a/docs/html/search/all_15.js b/docs/html/search/all_15.js
index 25ece4f6..bd880277 100644
--- a/docs/html/search/all_15.js
+++ b/docs/html/search/all_15.js
@@ -1,69 +1,74 @@
 var searchData=
 [
-  ['packreactionsettologicalreactionset_0',['packReactionSetToLogicalReactionSet',['../namespacegridfire_1_1reaction.html#abfcfafc0cda0c3ed56930a12e7ead67f',1,'gridfire::reaction']]],
-  ['parse_1',['parse',['../classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf',1,'gridfire::io::NetworkFileParser::parse()'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8',1,'gridfire::io::SimpleReactionListFileParser::parse()'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329',1,'gridfire::io::MESANetworkFileParser::parse()'],['../class_py_network_file_parser.html#afe09d1e5b07110e62cf4c6ec713cff54',1,'PyNetworkFileParser::parse()']]],
-  ['parsednetworkdata_2',['ParsedNetworkData',['../namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352',1,'gridfire::io']]],
-  ['parsespeciesstring_3',['parseSpeciesString',['../namespacegridfire_1_1reaclib.html#afc0deac6cbef076e8884e66fd3ab66e0',1,'gridfire::reaclib']]],
-  ['partition_20functions_4',['Available Partition Functions',['../index.html#autotoc_md31',1,'']]],
-  ['partition_2eh_5',['partition.h',['../partition_8h.html',1,'']]],
-  ['partition_5fabstract_2eh_6',['partition_abstract.h',['../partition__abstract_8h.html',1,'']]],
-  ['partition_5fcomposite_2ecpp_7',['partition_composite.cpp',['../partition__composite_8cpp.html',1,'']]],
-  ['partition_5fcomposite_2eh_8',['partition_composite.h',['../partition__composite_8h.html',1,'']]],
-  ['partition_5fground_2ecpp_9',['partition_ground.cpp',['../partition__ground_8cpp.html',1,'']]],
-  ['partition_5fground_2eh_10',['partition_ground.h',['../partition__ground_8h.html',1,'']]],
-  ['partition_5frauscher_5fthielemann_2ecpp_11',['partition_rauscher_thielemann.cpp',['../partition__rauscher__thielemann_8cpp.html',1,'']]],
-  ['partition_5frauscher_5fthielemann_2eh_12',['partition_rauscher_thielemann.h',['../partition__rauscher__thielemann_8h.html',1,'']]],
-  ['partition_5ftypes_2eh_13',['partition_types.h',['../partition__types_8h.html',1,'']]],
-  ['partitionbytimescale_14',['partitionByTimescale',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ad4d29ee55f89384807616d1068797067',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['partitionfunction_15',['PartitionFunction',['../classgridfire_1_1partition_1_1_partition_function.html',1,'gridfire::partition']]],
-  ['partitionnetwork_16',['partitionNetwork',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c',1,'gridfire::MultiscalePartitioningEngineView::partitionNetwork(const std::vector&lt; double &gt; &amp;Y, double T9, double rho)'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7',1,'gridfire::MultiscalePartitioningEngineView::partitionNetwork(const NetIn &amp;netIn)']]],
-  ['pename_17',['peName',['../classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97',1,'gridfire::reaction::Reaction::peName()'],['../classgridfire_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97',1,'gridfire::Reaction::peName()']]],
-  ['philosophy_20and_20workflow_18',['Design Philosophy and Workflow',['../index.html#autotoc_md1',1,'']]],
-  ['platforms_19',['Dependency Installation on Common Platforms',['../index.html#autotoc_md22',1,'']]],
-  ['platforms_20',['Currently, known good platforms',['../index.html#autotoc_md10',1,'']]],
-  ['populatereactionidmap_21',['populateReactionIDMap',['../classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567',1,'gridfire::GraphEngine']]],
-  ['populatespeciestoindexmap_22',['populateSpeciesToIndexMap',['../classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391',1,'gridfire::GraphEngine']]],
-  ['pp_5frate_23',['pp_rate',['../namespacegridfire_1_1approx8.html#a16739298c01e56967ce784a9a957439f',1,'gridfire::approx8']]],
-  ['precomputedreaction_24',['PrecomputedReaction',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html',1,'gridfire::GraphEngine']]],
-  ['precomputenetwork_25',['precomputeNetwork',['../classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd',1,'gridfire::GraphEngine']]],
-  ['prerequisites_26',['Prerequisites',['../index.html#autotoc_md12',1,'']]],
-  ['primedcomposition_27',['primedComposition',['../structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb',1,'gridfire::PrimingReport']]],
-  ['primeengine_28',['primeEngine',['../classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e',1,'gridfire::DynamicEngine::primeEngine()'],['../classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e',1,'gridfire::GraphEngine::primeEngine()'],['../classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3',1,'gridfire::AdaptiveEngineView::primeEngine()'],['../classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460',1,'gridfire::DefinedEngineView::primeEngine()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235',1,'gridfire::MultiscalePartitioningEngineView::primeEngine()'],['../class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878',1,'PyDynamicEngine::primeEngine()']]],
-  ['primenetwork_29',['primeNetwork',['../namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f',1,'gridfire']]],
-  ['priming_2ecpp_30',['priming.cpp',['../priming_8cpp.html',1,'']]],
-  ['priming_2eh_31',['priming.h',['../priming_8h.html',1,'']]],
-  ['primingreport_32',['PrimingReport',['../structgridfire_1_1_priming_report.html',1,'gridfire']]],
-  ['primingreportstatus_33',['PrimingReportStatus',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154',1,'gridfire']]],
-  ['primingreportstatusstrings_34',['PrimingReportStatusStrings',['../namespacegridfire.html#a02be158966bf82a91b159b7a962c3fa5',1,'gridfire']]],
-  ['product_5fpowers_35',['product_powers',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3ce63aa3ad88568f4eb0d3ca2414209f',1,'gridfire::GraphEngine::PrecomputedReaction']]],
-  ['product_5fspecies_36',['product_species',['../classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c',1,'gridfire::reaction::Reaction::product_species()'],['../classgridfire_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c',1,'gridfire::Reaction::product_species()']]],
-  ['products_37',['products',['../classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02',1,'gridfire::reaction::Reaction::products()'],['../classgridfire_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02',1,'gridfire::Reaction::products()']]],
-  ['products_5fstr_38',['products_str',['../structgridfire_1_1reaclib_1_1_reaction_record.html#af1b1d3b0308d965ef0697b247fcf9082',1,'gridfire::reaclib::ReactionRecord']]],
-  ['projects_39',['Related Projects',['../index.html#autotoc_md57',1,'']]],
-  ['py_5fengine_2ecpp_40',['py_engine.cpp',['../py__engine_8cpp.html',1,'']]],
-  ['py_5fengine_2eh_41',['py_engine.h',['../py__engine_8h.html',1,'']]],
-  ['py_5fio_2ecpp_42',['py_io.cpp',['../py__io_8cpp.html',1,'']]],
-  ['py_5fio_2eh_43',['py_io.h',['../py__io_8h.html',1,'']]],
-  ['py_5fpartition_2ecpp_44',['py_partition.cpp',['../py__partition_8cpp.html',1,'']]],
-  ['py_5fpartition_2eh_45',['py_partition.h',['../py__partition_8h.html',1,'']]],
-  ['py_5fscreening_2ecpp_46',['py_screening.cpp',['../py__screening_8cpp.html',1,'']]],
-  ['py_5fscreening_2eh_47',['py_screening.h',['../py__screening_8h.html',1,'']]],
-  ['py_5fsolver_2ecpp_48',['py_solver.cpp',['../py__solver_8cpp.html',1,'']]],
-  ['py_5fsolver_2eh_49',['py_solver.h',['../py__solver_8h.html',1,'']]],
-  ['pybind11_5fmodule_50',['PYBIND11_MODULE',['../bindings_8cpp.html#aa8955e3a8d1ea2d94e8a2c941a12c03f',1,'bindings.cpp']]],
-  ['pydynamicengine_51',['PyDynamicEngine',['../class_py_dynamic_engine.html',1,'']]],
-  ['pydynamicengineview_52',['PyDynamicEngineView',['../class_py_dynamic_engine_view.html',1,'']]],
-  ['pydynamicnetworksolverstrategy_53',['PyDynamicNetworkSolverStrategy',['../class_py_dynamic_network_solver_strategy.html',1,'PyDynamicNetworkSolverStrategy'],['../class_py_dynamic_network_solver_strategy.html#a4a3fce2a9853e7192354834bf2b36159',1,'PyDynamicNetworkSolverStrategy::PyDynamicNetworkSolverStrategy()']]],
-  ['pyengine_54',['PyEngine',['../class_py_engine.html',1,'']]],
-  ['pyengineview_55',['PyEngineView',['../class_py_engine_view.html',1,'']]],
-  ['pynetworkfileparser_56',['PyNetworkFileParser',['../class_py_network_file_parser.html',1,'']]],
-  ['pypartitionfunction_57',['PyPartitionFunction',['../class_py_partition_function.html',1,'']]],
-  ['pypi_58',['pypi',['../index.html#autotoc_md5',1,'']]],
-  ['pypi_20release_59',['1.1 PyPI Release',['../md_docs_2static_2usage.html#autotoc_md61',1,'']]],
-  ['pyscreening_60',['PyScreening',['../class_py_screening.html',1,'']]],
-  ['python_61',['Python',['../index.html#autotoc_md54',1,'']]],
-  ['python_20callbacks_62',['Python callbacks',['../index.html#autotoc_md56',1,'']]],
-  ['python_20extensibility_63',['Python Extensibility',['../index.html#autotoc_md44',1,'']]],
-  ['python_20installation_64',['Python installation',['../index.html#autotoc_md4',1,'']]],
-  ['python_20usage_20guide_65',['GridFire Python Usage Guide',['../md_docs_2static_2usage.html',1,'']]]
+  ['pack_5fisotope_5fid_0',['pack_isotope_id',['../classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ac73e9476c89ec7066999b0986bc0d9c1',1,'gridfire::rates::weak::WeakRateInterpolator']]],
+  ['packreactionset_1',['packReactionSet',['../namespacegridfire_1_1reaction.html#af34403cccdb4a091e979f0f895be2f8c',1,'gridfire::reaction']]],
+  ['parse_2',['parse',['../classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf',1,'gridfire::io::NetworkFileParser::parse()'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8',1,'gridfire::io::SimpleReactionListFileParser::parse()'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329',1,'gridfire::io::MESANetworkFileParser::parse()'],['../class_py_network_file_parser.html#afe09d1e5b07110e62cf4c6ec713cff54',1,'PyNetworkFileParser::parse()']]],
+  ['parsednetworkdata_3',['ParsedNetworkData',['../namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352',1,'gridfire::io']]],
+  ['parsespeciesstring_4',['parseSpeciesString',['../namespacegridfire_1_1reaclib.html#afc0deac6cbef076e8884e66fd3ab66e0',1,'gridfire::reaclib']]],
+  ['partition_20functions_5',['Available Partition Functions',['../index.html#autotoc_md31',1,'']]],
+  ['partition_2eh_6',['partition.h',['../partition_8h.html',1,'']]],
+  ['partition_5fabstract_2eh_7',['partition_abstract.h',['../partition__abstract_8h.html',1,'']]],
+  ['partition_5fcomposite_2ecpp_8',['partition_composite.cpp',['../partition__composite_8cpp.html',1,'']]],
+  ['partition_5fcomposite_2eh_9',['partition_composite.h',['../partition__composite_8h.html',1,'']]],
+  ['partition_5fground_2ecpp_10',['partition_ground.cpp',['../partition__ground_8cpp.html',1,'']]],
+  ['partition_5fground_2eh_11',['partition_ground.h',['../partition__ground_8h.html',1,'']]],
+  ['partition_5frauscher_5fthielemann_2ecpp_12',['partition_rauscher_thielemann.cpp',['../partition__rauscher__thielemann_8cpp.html',1,'']]],
+  ['partition_5frauscher_5fthielemann_2eh_13',['partition_rauscher_thielemann.h',['../partition__rauscher__thielemann_8h.html',1,'']]],
+  ['partition_5ftypes_2eh_14',['partition_types.h',['../partition__types_8h.html',1,'']]],
+  ['partitionbytimescale_15',['partitionByTimescale',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['partitionfunction_16',['PartitionFunction',['../classgridfire_1_1partition_1_1_partition_function.html',1,'gridfire::partition']]],
+  ['partitionnetwork_17',['partitionNetwork',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c327a40d7c667043826002975baa2b4',1,'gridfire::MultiscalePartitioningEngineView::partitionNetwork(const fourdst::composition::Composition &amp;comp, double T9, double rho)'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7',1,'gridfire::MultiscalePartitioningEngineView::partitionNetwork(const NetIn &amp;netIn)']]],
+  ['pename_18',['peName',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#af775f97f4d5e144e33bc6e0ba58a5851',1,'gridfire::reaction::ReaclibReaction']]],
+  ['philosophy_20and_20workflow_19',['Design Philosophy and Workflow',['../index.html#autotoc_md1',1,'']]],
+  ['platforms_20',['Dependency Installation on Common Platforms',['../index.html#autotoc_md22',1,'']]],
+  ['platforms_21',['Currently, known good platforms',['../index.html#autotoc_md10',1,'']]],
+  ['populatereactionidmap_22',['populateReactionIDMap',['../classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567',1,'gridfire::GraphEngine']]],
+  ['populatespeciestoindexmap_23',['populateSpeciesToIndexMap',['../classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391',1,'gridfire::GraphEngine']]],
+  ['positron_5fcapture_24',['POSITRON_CAPTURE',['../namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7ae0be5539e1cf1c424806baa62540aa9d',1,'gridfire::rates::weak']]],
+  ['pp_5frate_25',['pp_rate',['../namespacegridfire_1_1approx8.html#a16739298c01e56967ce784a9a957439f',1,'gridfire::approx8']]],
+  ['precomputedreaction_26',['PrecomputedReaction',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html',1,'gridfire::GraphEngine']]],
+  ['precomputenetwork_27',['precomputeNetwork',['../classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd',1,'gridfire::GraphEngine']]],
+  ['prerequisites_28',['Prerequisites',['../index.html#autotoc_md12',1,'']]],
+  ['primedcomposition_29',['primedComposition',['../structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb',1,'gridfire::PrimingReport']]],
+  ['primeengine_30',['primeEngine',['../classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e',1,'gridfire::DynamicEngine::primeEngine()'],['../classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e',1,'gridfire::GraphEngine::primeEngine()'],['../classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3',1,'gridfire::AdaptiveEngineView::primeEngine()'],['../classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460',1,'gridfire::DefinedEngineView::primeEngine()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235',1,'gridfire::MultiscalePartitioningEngineView::primeEngine()'],['../class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878',1,'PyDynamicEngine::primeEngine()']]],
+  ['primenetwork_31',['primeNetwork',['../namespacegridfire.html#a3cd451f4b7a7bc7c2d7007ebb343e9ac',1,'gridfire']]],
+  ['priming_2ecpp_32',['priming.cpp',['../priming_8cpp.html',1,'']]],
+  ['priming_2eh_33',['priming.h',['../priming_8h.html',1,'']]],
+  ['primingreport_34',['PrimingReport',['../structgridfire_1_1_priming_report.html',1,'gridfire']]],
+  ['primingreportstatus_35',['PrimingReportStatus',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154',1,'gridfire']]],
+  ['primingreportstatusstrings_36',['PrimingReportStatusStrings',['../namespacegridfire.html#a02be158966bf82a91b159b7a962c3fa5',1,'gridfire']]],
+  ['printwhy_37',['printWhy',['../namespacegridfire_1_1trigger.html#a5e0fe21f3356426f26b109cdeb1edcd9',1,'gridfire::trigger']]],
+  ['product_5fpowers_38',['product_powers',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3ce63aa3ad88568f4eb0d3ca2414209f',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+  ['product_5fspecies_39',['product_species',['../classgridfire_1_1reaction_1_1_reaction.html#a0d16572ae2b664374d32ee6c4e22123a',1,'gridfire::reaction::Reaction::product_species()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a67c8fa4d5929c7a8cbca9b3d9dd2b704',1,'gridfire::reaction::ReaclibReaction::product_species()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a5c60feacb0ac48b35323d9f688315316',1,'gridfire::rates::weak::WeakReaction::product_species()'],['../classgridfire_1_1_reaction.html#ac2306d841bad605b7c9ae104397cec0f',1,'gridfire::Reaction::product_species()']]],
+  ['products_40',['products',['../classgridfire_1_1reaction_1_1_reaction.html#a3d7451045d8df41ea98b5e419e0e5ab0',1,'gridfire::reaction::Reaction::products()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a5f563b99bb550d5bafa2a989502de019',1,'gridfire::reaction::ReaclibReaction::products()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aed0ea28ed3ba96a9f86aa9db947ec01c',1,'gridfire::rates::weak::WeakReaction::products()'],['../classgridfire_1_1_reaction.html#ac2918935929030e8d218dc8d107a78f9',1,'gridfire::Reaction::products()']]],
+  ['products_5fstr_41',['products_str',['../structgridfire_1_1reaclib_1_1_reaction_record.html#af1b1d3b0308d965ef0697b247fcf9082',1,'gridfire::reaclib::ReactionRecord']]],
+  ['projects_42',['Related Projects',['../index.html#autotoc_md57',1,'']]],
+  ['protonmassg_43',['protonMassG',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abdb3124f6ef5ea294f402d30717fa208',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['protonmassmev_44',['protonMassMeV',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8a780d3937e60794f007ec65fe866a56',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['py_5fengine_2ecpp_45',['py_engine.cpp',['../py__engine_8cpp.html',1,'']]],
+  ['py_5fengine_2eh_46',['py_engine.h',['../py__engine_8h.html',1,'']]],
+  ['py_5fio_2ecpp_47',['py_io.cpp',['../py__io_8cpp.html',1,'']]],
+  ['py_5fio_2eh_48',['py_io.h',['../py__io_8h.html',1,'']]],
+  ['py_5fpartition_2ecpp_49',['py_partition.cpp',['../py__partition_8cpp.html',1,'']]],
+  ['py_5fpartition_2eh_50',['py_partition.h',['../py__partition_8h.html',1,'']]],
+  ['py_5fscreening_2ecpp_51',['py_screening.cpp',['../py__screening_8cpp.html',1,'']]],
+  ['py_5fscreening_2eh_52',['py_screening.h',['../py__screening_8h.html',1,'']]],
+  ['py_5fsolver_2ecpp_53',['py_solver.cpp',['../py__solver_8cpp.html',1,'']]],
+  ['py_5fsolver_2eh_54',['py_solver.h',['../py__solver_8h.html',1,'']]],
+  ['pybind11_5fmodule_55',['PYBIND11_MODULE',['../bindings_8cpp.html#aa8955e3a8d1ea2d94e8a2c941a12c03f',1,'bindings.cpp']]],
+  ['pydynamicengine_56',['PyDynamicEngine',['../class_py_dynamic_engine.html',1,'']]],
+  ['pydynamicengineview_57',['PyDynamicEngineView',['../class_py_dynamic_engine_view.html',1,'']]],
+  ['pydynamicnetworksolverstrategy_58',['PyDynamicNetworkSolverStrategy',['../class_py_dynamic_network_solver_strategy.html',1,'PyDynamicNetworkSolverStrategy'],['../class_py_dynamic_network_solver_strategy.html#a4a3fce2a9853e7192354834bf2b36159',1,'PyDynamicNetworkSolverStrategy::PyDynamicNetworkSolverStrategy()']]],
+  ['pyengine_59',['PyEngine',['../class_py_engine.html',1,'']]],
+  ['pyengineview_60',['PyEngineView',['../class_py_engine_view.html',1,'']]],
+  ['pynetworkfileparser_61',['PyNetworkFileParser',['../class_py_network_file_parser.html',1,'']]],
+  ['pypartitionfunction_62',['PyPartitionFunction',['../class_py_partition_function.html',1,'']]],
+  ['pypi_63',['pypi',['../index.html#autotoc_md5',1,'']]],
+  ['pypi_20release_64',['1.1 PyPI Release',['../md_docs_2static_2usage.html#autotoc_md61',1,'']]],
+  ['pyscreening_65',['PyScreening',['../class_py_screening.html',1,'']]],
+  ['python_66',['Python',['../index.html#autotoc_md54',1,'']]],
+  ['python_20callbacks_67',['Python callbacks',['../index.html#autotoc_md56',1,'']]],
+  ['python_20extensibility_68',['Python Extensibility',['../index.html#autotoc_md44',1,'']]],
+  ['python_20installation_69',['Python installation',['../index.html#autotoc_md4',1,'']]],
+  ['python_20usage_20guide_70',['GridFire Python Usage Guide',['../md_docs_2static_2usage.html',1,'']]]
 ];
diff --git a/docs/html/search/all_16.js b/docs/html/search/all_16.js
index 1ec9a110..77dfee92 100644
--- a/docs/html/search/all_16.js
+++ b/docs/html/search/all_16.js
@@ -4,5 +4,6 @@ var searchData=
   ['qsecachekey_1',['QSECacheKey',['../structgridfire_1_1_q_s_e_cache_key.html',1,'gridfire::QSECacheKey'],['../structgridfire_1_1_q_s_e_cache_key.html#a3078528fc69b8e687448d3108a216c03',1,'gridfire::QSECacheKey::QSECacheKey()']]],
   ['qsegroup_2',['QSEGroup',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html',1,'gridfire::MultiscalePartitioningEngineView']]],
   ['qsepartition_3',['QSEPartition',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['qvalue_4',['qValue',['../structgridfire_1_1reaclib_1_1_reaction_record.html#aeeb8a1e078a27420e398663825cce644',1,'gridfire::reaclib::ReactionRecord::qValue'],['../classgridfire_1_1reaction_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8',1,'gridfire::reaction::Reaction::qValue()'],['../classgridfire_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8',1,'gridfire::Reaction::qValue()']]]
+  ['queryvalue_4',['queryValue',['../structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a3eb0be2063f7333994a026a569ae5568',1,'gridfire::rates::weak::BoundsErrorInfo']]],
+  ['qvalue_5',['qValue',['../structgridfire_1_1reaclib_1_1_reaction_record.html#aeeb8a1e078a27420e398663825cce644',1,'gridfire::reaclib::ReactionRecord::qValue'],['../classgridfire_1_1reaction_1_1_reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c',1,'gridfire::reaction::Reaction::qValue()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae47931948f12816eb890c0db4fff4d68',1,'gridfire::reaction::ReaclibReaction::qValue()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#afedb724bf9f1c8fc91d853f2bedb10cb',1,'gridfire::rates::weak::WeakReaction::qValue()'],['../classgridfire_1_1_reaction.html#a11c714febaf818f1d4d6c19a064d707e',1,'gridfire::Reaction::qValue()']]]
 ];
diff --git a/docs/html/search/all_17.js b/docs/html/search/all_17.js
index 5fa487f8..eea77a44 100644
--- a/docs/html/search/all_17.js
+++ b/docs/html/search/all_17.js
@@ -1,70 +1,77 @@
 var searchData=
 [
   ['rate_5ffit_0',['rate_fit',['../namespacegridfire_1_1approx8.html#aed8175751b4920a53922f87f8c0e63c4',1,'gridfire::approx8']]],
-  ['ratecoefficients_1',['rateCoefficients',['../classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e',1,'gridfire::reaction::Reaction::rateCoefficients()'],['../classgridfire_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e',1,'gridfire::Reaction::rateCoefficients()']]],
+  ['ratecoefficients_1',['rateCoefficients',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#adfed51cf788a7ed4770cbd5945ddab2f',1,'gridfire::reaction::ReaclibReaction']]],
   ['ratecoefficientset_2',['RateCoefficientSet',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html',1,'gridfire::reaction']]],
-  ['rauscher_5fthielemann_5fpartition_5fdata_3',['rauscher_thielemann_partition_data',['../rauscher__thielemann__partition__data_8h.html#a7b9a54e9c58848fe3205479acd770ffd',1,'rauscher_thielemann_partition_data.h']]],
-  ['rauscher_5fthielemann_5fpartition_5fdata_2eh_4',['rauscher_thielemann_partition_data.h',['../rauscher__thielemann__partition__data_8h.html',1,'']]],
-  ['rauscher_5fthielemann_5fpartition_5fdata_5flen_5',['rauscher_thielemann_partition_data_len',['../rauscher__thielemann__partition__data_8h.html#a5240736f3bdb43cf2cd63464c5835df1',1,'rauscher_thielemann_partition_data.h']]],
-  ['rauscher_5fthielemann_5fpartition_5fdata_5frecord_2eh_6',['rauscher_thielemann_partition_data_record.h',['../rauscher__thielemann__partition__data__record_8h.html',1,'']]],
-  ['rauscherthielemann_7',['RauscherThielemann',['../namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728ca4ca5b5dcd7343b06b860f05f3bc454b1',1,'gridfire::partition']]],
-  ['rauscherthielemannpartitiondatarecord_8',['RauscherThielemannPartitionDataRecord',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html',1,'gridfire::partition::record']]],
-  ['rauscherthielemannpartitionfunction_9',['RauscherThielemannPartitionFunction',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html',1,'gridfire::partition::RauscherThielemannPartitionFunction'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c',1,'gridfire::partition::RauscherThielemannPartitionFunction::RauscherThielemannPartitionFunction()']]],
-  ['raw_5freactions_5fdata_10',['raw_reactions_data',['../reactions__data_8h.html#aeb44e2b3b67960dfd83ecd7136c7d38b',1,'reactions_data.h']]],
-  ['raw_5freactions_5fdata_5flen_11',['raw_reactions_data_len',['../reactions__data_8h.html#a32dea82d95667c3df395d58fb469ce2a',1,'reactions_data.h']]],
-  ['reaclib_12',['REACLIB',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182',1,'gridfire']]],
-  ['reaclib_20in_20gridfire_13',['Reaclib in GridFire',['../index.html#autotoc_md33',1,'']]],
-  ['reaclib_2ecpp_14',['reaclib.cpp',['../reaclib_8cpp.html',1,'']]],
-  ['reaclib_2eh_15',['reaclib.h',['../reaclib_8h.html',1,'']]],
-  ['reactant_5fpowers_16',['reactant_powers',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275',1,'gridfire::GraphEngine::PrecomputedReaction']]],
-  ['reactant_5fspecies_17',['reactant_species',['../classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923',1,'gridfire::reaction::Reaction::reactant_species()'],['../classgridfire_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923',1,'gridfire::Reaction::reactant_species()']]],
-  ['reactants_18',['reactants',['../classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b',1,'gridfire::reaction::Reaction::reactants()'],['../classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b',1,'gridfire::Reaction::reactants()']]],
-  ['reactants_5fstr_19',['reactants_str',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a67afc513db8dbcc43d79733e22ca8d39',1,'gridfire::reaclib::ReactionRecord']]],
-  ['reaction_20',['Reaction',['../classgridfire_1_1_reaction.html',1,'gridfire::Reaction'],['../classgridfire_1_1reaction_1_1_reaction.html',1,'gridfire::reaction::Reaction'],['../classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c',1,'gridfire::reaction::Reaction::Reaction()'],['../classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c',1,'gridfire::Reaction::Reaction()']]],
-  ['reaction_20networks_21',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md68',1,'']]],
-  ['reaction_2ecpp_22',['reaction.cpp',['../reaction_8cpp.html',1,'']]],
-  ['reaction_2eh_23',['reaction.h',['../reaction_8h.html',1,'']]],
-  ['reaction_5findex_24',['reaction_index',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497',1,'gridfire::GraphEngine::PrecomputedReaction']]],
-  ['reactionflow_25',['ReactionFlow',['../structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html',1,'gridfire::AdaptiveEngineView']]],
-  ['reactionptr_26',['reactionPtr',['../structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a3bb21f20df8115d37108cf3c3be3bc6f',1,'gridfire::AdaptiveEngineView::ReactionFlow']]],
-  ['reactionrecord_27',['ReactionRecord',['../structgridfire_1_1reaclib_1_1_reaction_record.html',1,'gridfire::reaclib']]],
-  ['reactions_5fdata_2eh_28',['reactions_data.h',['../reactions__data_8h.html',1,'']]],
-  ['reactionset_29',['ReactionSet',['../namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1',1,'gridfire::reaction::ReactionSet'],['../namespacegridfire.html#ad838ce3fb6cc02c3fd90b924a0dd91b1',1,'gridfire::ReactionSet']]],
-  ['rebuild_30',['rebuild',['../classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf',1,'gridfire::DynamicEngine::rebuild()'],['../classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490',1,'gridfire::GraphEngine::rebuild()'],['../class_py_dynamic_engine.html#a3d30a9116825ab2c5c209bc2712126bc',1,'PyDynamicEngine::rebuild()']]],
-  ['recordadtape_31',['recordADTape',['../classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889',1,'gridfire::GraphEngine']]],
-  ['register_5fbase_5fengine_5fbindings_32',['register_base_engine_bindings',['../engine_2bindings_8cpp.html#a884aac3c3f2e8c62843c69329052d642',1,'register_base_engine_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a884aac3c3f2e8c62843c69329052d642',1,'register_base_engine_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5fcomposite_5fpartition_5fbindings_33',['register_composite_partition_bindings',['../partition_2bindings_8cpp.html#afded1a99d32cbf8745a42e0a81891e18',1,'register_composite_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#afded1a99d32cbf8745a42e0a81891e18',1,'register_composite_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5fengine_5fbindings_34',['register_engine_bindings',['../engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c',1,'register_engine_bindings(py::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a73a2ec4150b3954550f16b97102ec993',1,'register_engine_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
-  ['register_5fengine_5fview_5fbindings_35',['register_engine_view_bindings',['../engine_2bindings_8cpp.html#a74a027923ac27f235cf565f8d2a355bd',1,'register_engine_view_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a74a027923ac27f235cf565f8d2a355bd',1,'register_engine_view_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5fexception_5fbindings_36',['register_exception_bindings',['../exceptions_2bindings_8cpp.html#a15a0d54e4fe015a87d9f7a63284c2958',1,'register_exception_bindings(py::module &amp;m):&#160;bindings.cpp'],['../exceptions_2bindings_8h.html#a01725278af607be0d8f5a2d892a5ef73',1,'register_exception_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
-  ['register_5fexpectation_5fbindings_37',['register_expectation_bindings',['../expectations_2bindings_8cpp.html#ac6720822f6ad76636adbc1ae6febc2c2',1,'register_expectation_bindings(py::module &amp;m):&#160;bindings.cpp'],['../expectations_2bindings_8h.html#a12e0304a6d29af179118a29c8ea93dc0',1,'register_expectation_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
-  ['register_5fground_5fstate_5fpartition_5fbindings_38',['register_ground_state_partition_bindings',['../partition_2bindings_8cpp.html#ac36d0a5e8cb0122888fd218a143c7630',1,'register_ground_state_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#ac36d0a5e8cb0122888fd218a143c7630',1,'register_ground_state_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5fio_5fbindings_39',['register_io_bindings',['../io_2bindings_8cpp.html#a7f552627cbe94906e0ee98b121e77862',1,'register_io_bindings(py::module &amp;m):&#160;bindings.cpp'],['../io_2bindings_8h.html#a1d91b8298302b9f5401bf06c22651df4',1,'register_io_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
-  ['register_5fpartition_5fbindings_40',['register_partition_bindings',['../partition_2bindings_8cpp.html#a2806baaec82e0e6d66b80348584e08fd',1,'register_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#a2806baaec82e0e6d66b80348584e08fd',1,'register_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5fpartition_5ftypes_5fbindings_41',['register_partition_types_bindings',['../partition_2bindings_8cpp.html#a4c0db94b56a3b02482ac4fd654680cca',1,'register_partition_types_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#a4c0db94b56a3b02482ac4fd654680cca',1,'register_partition_types_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5frauscher_5fthielemann_5fpartition_5fbindings_42',['register_rauscher_thielemann_partition_bindings',['../partition_2bindings_8cpp.html#a4e56b30b36165067cf413787a55b9ecb',1,'register_rauscher_thielemann_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#a4e56b30b36165067cf413787a55b9ecb',1,'register_rauscher_thielemann_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5frauscher_5fthielemann_5fpartition_5fdata_5frecord_5fbindings_43',['register_rauscher_thielemann_partition_data_record_bindings',['../partition_2bindings_8cpp.html#ae405682b0e35624397583048f4d40f75',1,'register_rauscher_thielemann_partition_data_record_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#ae405682b0e35624397583048f4d40f75',1,'register_rauscher_thielemann_partition_data_record_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5freaction_5fbindings_44',['register_reaction_bindings',['../reaction_2bindings_8cpp.html#ae174b115814ec42920a799881cef1efa',1,'register_reaction_bindings(py::module &amp;m):&#160;bindings.cpp'],['../reaction_2bindings_8h.html#a221d509fd54278898e2cbb73663f53d0',1,'register_reaction_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
-  ['register_5fscreening_5fbindings_45',['register_screening_bindings',['../screening_2bindings_8cpp.html#a4fcef69d9382bfbc315cb061038627f4',1,'register_screening_bindings(py::module &amp;m):&#160;bindings.cpp'],['../screening_2bindings_8h.html#a9e1a938ffee0a1b9d913fa4968865b1b',1,'register_screening_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
-  ['register_5fsolver_5fbindings_46',['register_solver_bindings',['../solver_2bindings_8cpp.html#a722d28831d82cd075081fcf4b403479d',1,'register_solver_bindings(const py::module &amp;m):&#160;bindings.cpp'],['../solver_2bindings_8h.html#a7ff40d9e08fcb5028e914045447d46d3',1,'register_solver_bindings(const pybind11::module &amp;m):&#160;bindings.h']]],
-  ['register_5ftype_5fbindings_47',['register_type_bindings',['../types_2bindings_8cpp.html#a37d2e0b6a2605d063eec5e2a64e9bcc5',1,'register_type_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../types_2bindings_8h.html#a37d2e0b6a2605d063eec5e2a64e9bcc5',1,'register_type_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5futils_5fbindings_48',['register_utils_bindings',['../utils_2bindings_8cpp.html#a7af842f50ca4a721518e716d0229697c',1,'register_utils_bindings(py::module &amp;m):&#160;bindings.cpp'],['../utils_2bindings_8h.html#a9eefca377142320755a869fafc6311c7',1,'register_utils_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
-  ['related_20projects_49',['Related Projects',['../index.html#autotoc_md57',1,'']]],
-  ['release_50',['1.1 PyPI Release',['../md_docs_2static_2usage.html#autotoc_md61',1,'']]],
-  ['remove_5freaction_51',['remove_reaction',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a89c4c5af12aef7fbfc24316c88237e22',1,'gridfire::reaction::TemplatedReactionSet']]],
-  ['reporting_2eh_52',['reporting.h',['../reporting_8h.html',1,'']]],
-  ['reproducibility_53',['Reproducibility',['../index.html#autotoc_md17',1,'']]],
-  ['required_54',['Required',['../index.html#autotoc_md13',1,'']]],
-  ['rescueedgespeciesdestructionchannel_55',['rescueEdgeSpeciesDestructionChannel',['../classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f',1,'gridfire::AdaptiveEngineView']]],
-  ['rescueset_56',['RescueSet',['../classgridfire_1_1_adaptive_engine_view.html#a4ff60b5214ec0bdaf683feb6615573a5',1,'gridfire::AdaptiveEngineView']]],
-  ['reservejacobianmatrix_57',['reserveJacobianMatrix',['../classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5',1,'gridfire::GraphEngine']]],
-  ['rev_5fsparse_5fjac_58',['rev_sparse_jac',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4',1,'gridfire::GraphEngine::AtomicReverseRate']]],
-  ['reverse_59',['reverse',['../structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd',1,'gridfire::reaclib::ReactionRecord::reverse'],['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e',1,'gridfire::GraphEngine::AtomicReverseRate::reverse()']]],
-  ['reverse_5fsymmetry_5ffactor_60',['reverse_symmetry_factor',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6bcfe2230dd54b088180d34389266b07',1,'gridfire::GraphEngine::PrecomputedReaction']]],
-  ['rho_61',['rho',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ad565c013b373f312f0f5157f11d02cef',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['rho_5ftol_62',['rho_tol',['../structgridfire_1_1_q_s_e_cache_config.html#a57b7ca68463aa9b78007e5cf35ebf7ce',1,'gridfire::QSECacheConfig']]],
-  ['rhsmanager_63',['RHSManager',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html',1,'gridfire::solver::DirectNetworkSolver::RHSManager'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a4ba187f1a0deca0a82ac3c9a14883855',1,'gridfire::solver::DirectNetworkSolver::RHSManager::RHSManager()']]],
-  ['rosenbrock_20method_64',['DirectNetworkSolver (Implicit Rosenbrock Method)',['../index.html#autotoc_md41',1,'']]],
-  ['rpname_65',['rpName',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a523b7cfb0a6d8ddccd785aef2f425ad1',1,'gridfire::reaclib::ReactionRecord']]],
-  ['rt_5ftemperature_5fgrid_5ft9_66',['RT_TEMPERATURE_GRID_T9',['../namespacegridfire_1_1partition.html#a1e08a3c20c55bc6fa4a4ecdf7ea57b8f',1,'gridfire::partition']]]
+  ['ratedatarow_3',['RateDataRow',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html',1,'gridfire::rates::weak']]],
+  ['rauscher_5fthielemann_5fpartition_5fdata_4',['rauscher_thielemann_partition_data',['../rauscher__thielemann__partition__data_8h.html#a7b9a54e9c58848fe3205479acd770ffd',1,'rauscher_thielemann_partition_data.h']]],
+  ['rauscher_5fthielemann_5fpartition_5fdata_2eh_5',['rauscher_thielemann_partition_data.h',['../rauscher__thielemann__partition__data_8h.html',1,'']]],
+  ['rauscher_5fthielemann_5fpartition_5fdata_5flen_6',['rauscher_thielemann_partition_data_len',['../rauscher__thielemann__partition__data_8h.html#a5240736f3bdb43cf2cd63464c5835df1',1,'rauscher_thielemann_partition_data.h']]],
+  ['rauscher_5fthielemann_5fpartition_5fdata_5frecord_2eh_7',['rauscher_thielemann_partition_data_record.h',['../rauscher__thielemann__partition__data__record_8h.html',1,'']]],
+  ['rauscherthielemann_8',['RauscherThielemann',['../namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728ca4ca5b5dcd7343b06b860f05f3bc454b1',1,'gridfire::partition']]],
+  ['rauscherthielemannpartitiondatarecord_9',['RauscherThielemannPartitionDataRecord',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html',1,'gridfire::partition::record']]],
+  ['rauscherthielemannpartitionfunction_10',['RauscherThielemannPartitionFunction',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html',1,'gridfire::partition::RauscherThielemannPartitionFunction'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c',1,'gridfire::partition::RauscherThielemannPartitionFunction::RauscherThielemannPartitionFunction()']]],
+  ['raw_5freactions_5fdata_11',['raw_reactions_data',['../reactions__data_8h.html#aeb44e2b3b67960dfd83ecd7136c7d38b',1,'reactions_data.h']]],
+  ['raw_5freactions_5fdata_5flen_12',['raw_reactions_data_len',['../reactions__data_8h.html#a32dea82d95667c3df395d58fb469ce2a',1,'reactions_data.h']]],
+  ['reaclib_13',['REACLIB',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182',1,'gridfire::REACLIB'],['../namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74eaf9885ed04411bef7b70f78b643c6a220',1,'gridfire::reaction::REACLIB']]],
+  ['reaclib_20in_20gridfire_14',['Reaclib in GridFire',['../index.html#autotoc_md33',1,'']]],
+  ['reaclib_2ecpp_15',['reaclib.cpp',['../reaclib_8cpp.html',1,'']]],
+  ['reaclib_2eh_16',['reaclib.h',['../reaclib_8h.html',1,'']]],
+  ['reaclibreaction_17',['ReaclibReaction',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html',1,'gridfire::reaction::ReaclibReaction'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a264112a230817a6080c770686e5bcc01',1,'gridfire::reaction::ReaclibReaction::ReaclibReaction()']]],
+  ['reactant_5fpowers_18',['reactant_powers',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+  ['reactant_5fspecies_19',['reactant_species',['../classgridfire_1_1reaction_1_1_reaction.html#a82c14096308cdc9126ab6d9667febcd2',1,'gridfire::reaction::Reaction::reactant_species()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad85ca288289b25d482cbb8e3ff270028',1,'gridfire::reaction::ReaclibReaction::reactant_species()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aae06ff559026e3ce242a42cdd888c5a0',1,'gridfire::rates::weak::WeakReaction::reactant_species()'],['../classgridfire_1_1_reaction.html#a4be8440aa7e79eab1d44b5d83bcdab79',1,'gridfire::Reaction::reactant_species()']]],
+  ['reactants_20',['reactants',['../classgridfire_1_1reaction_1_1_reaction.html#ac7b08c61cdc97268b9442afec4d08dad',1,'gridfire::reaction::Reaction::reactants()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad095aba46860fec0e68386bf04f7f142',1,'gridfire::reaction::ReaclibReaction::reactants()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1362d46630f30203027093e35883d1b1',1,'gridfire::rates::weak::WeakReaction::reactants()'],['../classgridfire_1_1_reaction.html#a0c533797f18c2fe4945f1afb3fb06d5d',1,'gridfire::Reaction::reactants()']]],
+  ['reactants_5fstr_21',['reactants_str',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a67afc513db8dbcc43d79733e22ca8d39',1,'gridfire::reaclib::ReactionRecord']]],
+  ['reaction_22',['Reaction',['../classgridfire_1_1_reaction.html',1,'gridfire::Reaction'],['../classgridfire_1_1reaction_1_1_reaction.html',1,'gridfire::reaction::Reaction']]],
+  ['reaction_20networks_23',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md68',1,'']]],
+  ['reaction_2ecpp_24',['reaction.cpp',['../reaction_8cpp.html',1,'']]],
+  ['reaction_2eh_25',['reaction.h',['../reaction_8h.html',1,'']]],
+  ['reaction_5findex_26',['reaction_index',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+  ['reactionflow_27',['ReactionFlow',['../structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html',1,'gridfire::AdaptiveEngineView']]],
+  ['reactionptr_28',['reactionPtr',['../structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#afc894db76a799be17be91130ff3ae6d9',1,'gridfire::AdaptiveEngineView::ReactionFlow']]],
+  ['reactionrecord_29',['ReactionRecord',['../structgridfire_1_1reaclib_1_1_reaction_record.html',1,'gridfire::reaclib']]],
+  ['reactions_5fdata_2eh_30',['reactions_data.h',['../reactions__data_8h.html',1,'']]],
+  ['reactionset_31',['ReactionSet',['../classgridfire_1_1reaction_1_1_reaction_set.html',1,'gridfire::reaction::ReactionSet'],['../classgridfire_1_1_reaction_set.html',1,'gridfire::ReactionSet'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de',1,'gridfire::reaction::ReactionSet::ReactionSet(std::vector&lt; std::unique_ptr&lt; Reaction &gt; &gt; &amp;&amp;reactions)'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a789dee5d93810b85062e59508fe0adea',1,'gridfire::reaction::ReactionSet::ReactionSet(const std::vector&lt; Reaction * &gt; &amp;reactions)'],['../classgridfire_1_1reaction_1_1_reaction_set.html#ab9edff40316b42ce41b2f895962c1041',1,'gridfire::reaction::ReactionSet::ReactionSet()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#acfe2341ae1f016ad82098b6f5a1efc45',1,'gridfire::reaction::ReactionSet::ReactionSet(const ReactionSet &amp;other)'],['../classgridfire_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de',1,'gridfire::ReactionSet::ReactionSet(std::vector&lt; std::unique_ptr&lt; Reaction &gt; &gt; &amp;&amp;reactions)'],['../classgridfire_1_1_reaction_set.html#a789dee5d93810b85062e59508fe0adea',1,'gridfire::ReactionSet::ReactionSet(const std::vector&lt; Reaction * &gt; &amp;reactions)'],['../classgridfire_1_1_reaction_set.html#ab9edff40316b42ce41b2f895962c1041',1,'gridfire::ReactionSet::ReactionSet()'],['../classgridfire_1_1_reaction_set.html#acfe2341ae1f016ad82098b6f5a1efc45',1,'gridfire::ReactionSet::ReactionSet(const ReactionSet &amp;other)']]],
+  ['reactiontype_32',['ReactionType',['../namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e',1,'gridfire::reaction']]],
+  ['rebuild_33',['rebuild',['../classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf',1,'gridfire::DynamicEngine::rebuild()'],['../classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490',1,'gridfire::GraphEngine::rebuild()'],['../class_py_dynamic_engine.html#a3d30a9116825ab2c5c209bc2712126bc',1,'PyDynamicEngine::rebuild()']]],
+  ['recordadtape_34',['recordADTape',['../classgridfire_1_1_graph_engine.html#ab29ef3225c8fcda012b10765df064b63',1,'gridfire::GraphEngine']]],
+  ['recordepsadtape_35',['recordEpsADTape',['../classgridfire_1_1_graph_engine.html#a16b8cd1b0e19b4d4519596a4e22eaf5c',1,'gridfire::GraphEngine']]],
+  ['register_5fbase_5fengine_5fbindings_36',['register_base_engine_bindings',['../engine_2bindings_8cpp.html#a766b8bf2c08f2e81486752261ec89642',1,'register_base_engine_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a766b8bf2c08f2e81486752261ec89642',1,'register_base_engine_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5fcomposite_5fpartition_5fbindings_37',['register_composite_partition_bindings',['../partition_2bindings_8cpp.html#a9d0d58ff2233e31a4ad88cc418b5ca64',1,'register_composite_partition_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#a9d0d58ff2233e31a4ad88cc418b5ca64',1,'register_composite_partition_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5fengine_5fbindings_38',['register_engine_bindings',['../engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c',1,'register_engine_bindings(py::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a73a2ec4150b3954550f16b97102ec993',1,'register_engine_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
+  ['register_5fengine_5fview_5fbindings_39',['register_engine_view_bindings',['../engine_2bindings_8cpp.html#ac12de48f4164b679dd7afb03c83ec4bf',1,'register_engine_view_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#ac12de48f4164b679dd7afb03c83ec4bf',1,'register_engine_view_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5fexception_5fbindings_40',['register_exception_bindings',['../exceptions_2bindings_8cpp.html#a5566602745756f64f21905217b6d21fd',1,'register_exception_bindings(const py::module &amp;m):&#160;bindings.cpp'],['../exceptions_2bindings_8h.html#a2a0ce1da699ce25f3afdce57cde65471',1,'register_exception_bindings(const pybind11::module &amp;m):&#160;bindings.h']]],
+  ['register_5fexpectation_5fbindings_41',['register_expectation_bindings',['../expectations_2bindings_8cpp.html#ad8b382f2ef7888e5b49bcc117439d843',1,'register_expectation_bindings(const py::module &amp;m):&#160;bindings.cpp'],['../expectations_2bindings_8h.html#ac4570540d44fb7e3136f63448fc2c22c',1,'register_expectation_bindings(const pybind11::module &amp;m):&#160;bindings.h']]],
+  ['register_5fground_5fstate_5fpartition_5fbindings_42',['register_ground_state_partition_bindings',['../partition_2bindings_8cpp.html#ac0a1def5c77c5554187c9d4f26fce77e',1,'register_ground_state_partition_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#ac0a1def5c77c5554187c9d4f26fce77e',1,'register_ground_state_partition_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5fio_5fbindings_43',['register_io_bindings',['../io_2bindings_8cpp.html#a3f76dbefdeeb3b49828ce36586899695',1,'register_io_bindings(const py::module &amp;m) -&gt; void:&#160;bindings.cpp'],['../io_2bindings_8h.html#aba28f9bd688764ab1905af9d40d4b428',1,'register_io_bindings(const pybind11::module &amp;m):&#160;bindings.h']]],
+  ['register_5fpartition_5fbindings_44',['register_partition_bindings',['../partition_2bindings_8cpp.html#a2806baaec82e0e6d66b80348584e08fd',1,'register_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#a2806baaec82e0e6d66b80348584e08fd',1,'register_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5fpartition_5ftypes_5fbindings_45',['register_partition_types_bindings',['../partition_2bindings_8cpp.html#a4c0db94b56a3b02482ac4fd654680cca',1,'register_partition_types_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#a4c0db94b56a3b02482ac4fd654680cca',1,'register_partition_types_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5frauscher_5fthielemann_5fpartition_5fbindings_46',['register_rauscher_thielemann_partition_bindings',['../partition_2bindings_8cpp.html#ae1665331725ff38c39d7d3eec551ec97',1,'register_rauscher_thielemann_partition_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#ae1665331725ff38c39d7d3eec551ec97',1,'register_rauscher_thielemann_partition_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5frauscher_5fthielemann_5fpartition_5fdata_5frecord_5fbindings_47',['register_rauscher_thielemann_partition_data_record_bindings',['../partition_2bindings_8cpp.html#a294e2893e79c41c10f914467d4858c1a',1,'register_rauscher_thielemann_partition_data_record_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#a294e2893e79c41c10f914467d4858c1a',1,'register_rauscher_thielemann_partition_data_record_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5freaction_5fbindings_48',['register_reaction_bindings',['../reaction_2bindings_8cpp.html#ae174b115814ec42920a799881cef1efa',1,'register_reaction_bindings(py::module &amp;m):&#160;bindings.cpp'],['../reaction_2bindings_8h.html#a221d509fd54278898e2cbb73663f53d0',1,'register_reaction_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
+  ['register_5fscreening_5fbindings_49',['register_screening_bindings',['../screening_2bindings_8cpp.html#a4fcef69d9382bfbc315cb061038627f4',1,'register_screening_bindings(py::module &amp;m):&#160;bindings.cpp'],['../screening_2bindings_8h.html#a9e1a938ffee0a1b9d913fa4968865b1b',1,'register_screening_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
+  ['register_5fsolver_5fbindings_50',['register_solver_bindings',['../solver_2bindings_8cpp.html#a722d28831d82cd075081fcf4b403479d',1,'register_solver_bindings(const py::module &amp;m):&#160;bindings.cpp'],['../solver_2bindings_8h.html#a7ff40d9e08fcb5028e914045447d46d3',1,'register_solver_bindings(const pybind11::module &amp;m):&#160;bindings.h']]],
+  ['register_5ftype_5fbindings_51',['register_type_bindings',['../types_2bindings_8cpp.html#aa0589677938fad59ffce3f6981f53ff0',1,'register_type_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../types_2bindings_8h.html#aa0589677938fad59ffce3f6981f53ff0',1,'register_type_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5futils_5fbindings_52',['register_utils_bindings',['../utils_2bindings_8cpp.html#a7af842f50ca4a721518e716d0229697c',1,'register_utils_bindings(py::module &amp;m):&#160;bindings.cpp'],['../utils_2bindings_8h.html#a9eefca377142320755a869fafc6311c7',1,'register_utils_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
+  ['related_20projects_53',['Related Projects',['../index.html#autotoc_md57',1,'']]],
+  ['release_54',['1.1 PyPI Release',['../md_docs_2static_2usage.html#autotoc_md61',1,'']]],
+  ['remove_5freaction_55',['remove_reaction',['../classgridfire_1_1reaction_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd',1,'gridfire::reaction::ReactionSet::remove_reaction()'],['../classgridfire_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd',1,'gridfire::ReactionSet::remove_reaction()']]],
+  ['report_5flimiting_5fspecies_56',['report_limiting_species',['../namespacegridfire_1_1diagnostics.html#a9d95a6c9c4a942d71ff4c8046fe4107a',1,'gridfire::diagnostics']]],
+  ['reporting_2eh_57',['reporting.h',['../reporting_8h.html',1,'']]],
+  ['reproducibility_58',['Reproducibility',['../index.html#autotoc_md17',1,'']]],
+  ['required_59',['Required',['../index.html#autotoc_md13',1,'']]],
+  ['rescueedgespeciesdestructionchannel_60',['rescueEdgeSpeciesDestructionChannel',['../classgridfire_1_1_adaptive_engine_view.html#a0439f464865b4c01bad0f6be6055c3fc',1,'gridfire::AdaptiveEngineView']]],
+  ['rescueset_61',['RescueSet',['../classgridfire_1_1_adaptive_engine_view.html#ac674338ddcbae4c33dd84b0441631806',1,'gridfire::AdaptiveEngineView']]],
+  ['reservejacobianmatrix_62',['reserveJacobianMatrix',['../classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5',1,'gridfire::GraphEngine']]],
+  ['reset_63',['reset',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#af4034fa431e6c88fd05c50cce31b2fa0',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::reset()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a9b782cbf033ed2023da6b2d55dcefc4e',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::reset()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a0fe6af73b11b820561bd4e5552890d4e',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::reset()'],['../classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d',1,'gridfire::trigger::Trigger::reset()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#a2436d8643911ade907e03fb29531ceaa',1,'gridfire::trigger::AndTrigger::reset()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#ab42043e55c81bac5d3f981bc139579de',1,'gridfire::trigger::OrTrigger::reset()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#afe337517b77e5433d92ded3a64565141',1,'gridfire::trigger::NotTrigger::reset()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#abf218d255bde157540b51cd6a54f6eb1',1,'gridfire::trigger::EveryNthTrigger::reset()']]],
+  ['rev_5fsparse_5fjac_64',['rev_sparse_jac',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4',1,'gridfire::GraphEngine::AtomicReverseRate::rev_sparse_jac()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae9d61bdda761da89733408c232d7220e',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::rev_sparse_jac()']]],
+  ['reverse_65',['reverse',['../structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd',1,'gridfire::reaclib::ReactionRecord::reverse'],['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e',1,'gridfire::GraphEngine::AtomicReverseRate::reverse()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#aad13654ea15547c2c95035c3b7937d58',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::reverse()']]],
+  ['reverse_5fsymmetry_5ffactor_66',['reverse_symmetry_factor',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6bcfe2230dd54b088180d34389266b07',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+  ['rho_67',['rho',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a25afbc9f8a907304992e144dfa3529',1,'gridfire::solver::CVODESolverStrategy::TimestepContext::rho'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#afdc510f8160693806737c4ab517058b8',1,'gridfire::solver::CVODESolverStrategy::CVODEUserData::rho']]],
+  ['rho_5ftol_68',['rho_tol',['../structgridfire_1_1_q_s_e_cache_config.html#a57b7ca68463aa9b78007e5cf35ebf7ce',1,'gridfire::QSECacheConfig']]],
+  ['rhoye_5faxis_69',['rhoYe_axis',['../structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a30362f5bb497ae74cf6a10fd701273a0',1,'gridfire::rates::weak::IsotopeGrid']]],
+  ['rosenbrock_20method_70',['DirectNetworkSolver (Implicit Rosenbrock Method)',['../index.html#autotoc_md41',1,'']]],
+  ['rowdatatable_71',['RowDataTable',['../classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#afd3e0e1c5edaf12609b5fc81c379e3e5',1,'gridfire::rates::weak::WeakRateInterpolator']]],
+  ['rpname_72',['rpName',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a523b7cfb0a6d8ddccd785aef2f425ad1',1,'gridfire::reaclib::ReactionRecord']]],
+  ['rt_5ftemperature_5fgrid_5ft9_73',['RT_TEMPERATURE_GRID_T9',['../namespacegridfire_1_1partition.html#a1e08a3c20c55bc6fa4a4ecdf7ea57b8f',1,'gridfire::partition']]]
 ];
diff --git a/docs/html/search/all_18.js b/docs/html/search/all_18.js
index 8fcaf360..8f2eee5d 100644
--- a/docs/html/search/all_18.js
+++ b/docs/html/search/all_18.js
@@ -1,13 +1,13 @@
 var searchData=
 [
-  ['s_5fall_5freaclib_5freactions_5fptr_0',['s_all_reaclib_reactions_ptr',['../namespacegridfire_1_1reaclib.html#a5dba5efc372d2a9e9e846dfd6563f3c0',1,'gridfire::reaclib']]],
+  ['s_5fall_5freaclib_5freactions_5fptr_0',['s_all_reaclib_reactions_ptr',['../namespacegridfire_1_1reaclib.html#a1f75b17a44c23261a221f7558b1a63d9',1,'gridfire::reaclib']]],
   ['s_5finitialized_1',['s_initialized',['../namespacegridfire_1_1reaclib.html#af6ff0dfe7ffe34c73ba9acbab5ef8a66',1,'gridfire::reaclib']]],
-  ['s_5foperator_5fparens_5fcalled_2',['s_operator_parens_called',['../namespacegridfire.html#a8b632637f62614f509cde0e404a79054',1,'gridfire']]],
-  ['saving_3',['TUI config and saving',['../index.html#autotoc_md19',1,'']]],
-  ['screening_2eh_4',['screening.h',['../screening_8h.html',1,'']]],
-  ['screening_5fabstract_2eh_5',['screening_abstract.h',['../screening__abstract_8h.html',1,'']]],
-  ['screening_5fbare_2ecpp_6',['screening_bare.cpp',['../screening__bare_8cpp.html',1,'']]],
-  ['screening_5fbare_2eh_7',['screening_bare.h',['../screening__bare_8h.html',1,'']]],
+  ['saving_2',['TUI config and saving',['../index.html#autotoc_md19',1,'']]],
+  ['screening_2eh_3',['screening.h',['../screening_8h.html',1,'']]],
+  ['screening_5fabstract_2eh_4',['screening_abstract.h',['../screening__abstract_8h.html',1,'']]],
+  ['screening_5fbare_2ecpp_5',['screening_bare.cpp',['../screening__bare_8cpp.html',1,'']]],
+  ['screening_5fbare_2eh_6',['screening_bare.h',['../screening__bare_8h.html',1,'']]],
+  ['screening_5fintermediate_2eh_7',['screening_intermediate.h',['../screening__intermediate_8h.html',1,'']]],
   ['screening_5ftypes_2ecpp_8',['screening_types.cpp',['../screening__types_8cpp.html',1,'']]],
   ['screening_5ftypes_2eh_9',['screening_types.h',['../screening__types_8h.html',1,'']]],
   ['screening_5fweak_2ecpp_10',['screening_weak.cpp',['../screening__weak_8cpp.html',1,'']]],
@@ -17,53 +17,58 @@ var searchData=
   ['script_20build_20and_20installation_20instructions_14',['Script Build and Installation Instructions',['../index.html#autotoc_md9',1,'']]],
   ['scripts_15',['Install Scripts',['../index.html#autotoc_md15',1,'']]],
   ['secondorder_16',['SecondOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a264572d66aed5373d19dc80c7cde1f46',1,'gridfire']]],
-  ['seed_5findices_17',['seed_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+  ['seed_5fspecies_17',['seed_species',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af2d7e09d940e0fb3ca24a4bc8ec01031',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
   ['selectpartitionfunction_18',['selectPartitionFunction',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b',1,'gridfire::partition::CompositePartitionFunction']]],
   ['selectscreeningmodel_19',['selectScreeningModel',['../namespacegridfire_1_1screening.html#a6ca8556d27ac373e176f5b23437c416e',1,'gridfire::screening']]],
-  ['set_5fcallback_20',['set_callback',['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a4d97ee85933d5e5f90d4194bb021a1dc',1,'gridfire::solver::NetworkSolverStrategy::set_callback()'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a6bb0738eef5669b3ad83a3c65a0d1e96',1,'gridfire::solver::DirectNetworkSolver::set_callback()'],['../class_py_dynamic_network_solver_strategy.html#a112a7babc03858a69d6994a7155370d3',1,'PyDynamicNetworkSolverStrategy::set_callback()']]],
-  ['setformat_21',['setFormat',['../classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4',1,'gridfire::Network']]],
-  ['setnetworkreactions_22',['setNetworkReactions',['../classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f',1,'gridfire::DynamicEngine::setNetworkReactions()'],['../classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0',1,'gridfire::GraphEngine::setNetworkReactions()'],['../classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672',1,'gridfire::AdaptiveEngineView::setNetworkReactions()'],['../classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d',1,'gridfire::DefinedEngineView::setNetworkReactions()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#acb5fa7f03cd89b8c1b6b9ffdf3abb12e',1,'gridfire::MultiscalePartitioningEngineView::setNetworkReactions()'],['../class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6',1,'PyDynamicEngine::setNetworkReactions()']]],
-  ['setprecomputation_23',['setPrecomputation',['../classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1',1,'gridfire::GraphEngine']]],
-  ['setscreeningmodel_24',['setScreeningModel',['../classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd',1,'gridfire::DynamicEngine::setScreeningModel()'],['../classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c',1,'gridfire::GraphEngine::setScreeningModel()'],['../classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b',1,'gridfire::AdaptiveEngineView::setScreeningModel()'],['../classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258',1,'gridfire::DefinedEngineView::setScreeningModel()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f',1,'gridfire::MultiscalePartitioningEngineView::setScreeningModel()'],['../class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac',1,'PyDynamicEngine::setScreeningModel()']]],
-  ['setstiff_25',['setStiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#aefed972081514c29cdaaa1efd857ad8d',1,'gridfire::approx8::Approx8Network::setStiff()'],['../classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe',1,'gridfire::Network::setStiff()']]],
-  ['setup_26',['TUI config loading and meson setup',['../index.html#autotoc_md20',1,'']]],
-  ['setup_20and_20build_27',['CLI config loading, setup, and build',['../index.html#autotoc_md21',1,'']]],
-  ['setusereversereactions_28',['setUseReverseReactions',['../classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197',1,'gridfire::GraphEngine']]],
-  ['shallow_29',['Shallow',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a928d0f1285ee7d36c1c2fa1b1b7a164c',1,'gridfire']]],
-  ['simplereactionlistfileparser_30',['SimpleReactionListFileParser',['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html',1,'gridfire::io::SimpleReactionListFileParser'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993',1,'gridfire::io::SimpleReactionListFileParser::SimpleReactionListFileParser()']]],
-  ['size_31',['size',['../classgridfire_1_1reaction_1_1_logical_reaction.html#afa41050855b842c63db16c94d2e9b897',1,'gridfire::reaction::LogicalReaction::size()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2',1,'gridfire::reaction::TemplatedReactionSet::size()']]],
-  ['solveqseabundances_32',['solveQSEAbundances',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c5fcb8e3396d74359fd601554c9ffa9',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['solver_20implementations_33',['Future Solver Implementations',['../index.html#autotoc_md43',1,'']]],
-  ['solver_20strategies_34',['Numerical Solver Strategies',['../index.html#autotoc_md36',1,'']]],
-  ['solver_2ecpp_35',['solver.cpp',['../solver_8cpp.html',1,'']]],
-  ['solver_2eh_36',['solver.h',['../solver_8h.html',1,'']]],
-  ['solvercontextbase_37',['SolverContextBase',['../structgridfire_1_1solver_1_1_solver_context_base.html',1,'gridfire::solver']]],
-  ['source_38',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md62',1,'']]],
-  ['source_39',['source',['../index.html#autotoc_md6',1,'']]],
-  ['source_20for_20developers_40',['source for developers',['../index.html#autotoc_md7',1,'']]],
-  ['sourcelabel_41',['sourceLabel',['../classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0',1,'gridfire::reaction::Reaction::sourceLabel()'],['../classgridfire_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0',1,'gridfire::Reaction::sourceLabel()']]],
-  ['sources_42',['sources',['../classgridfire_1_1reaction_1_1_logical_reaction.html#add094eda0e71126f8443698d7f3317f4',1,'gridfire::reaction::LogicalReaction']]],
-  ['sparsitypattern_43',['SparsityPattern',['../namespacegridfire.html#a898dfe22579e649935645cbd6f073178',1,'gridfire']]],
-  ['species_5findices_44',['species_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
-  ['stale_45',['STALE',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca4d855a061b3066dc14a3b12ed26b5456',1,'gridfire::expectations']]],
-  ['staleengineerror_46',['StaleEngineError',['../classgridfire_1_1exceptions_1_1_stale_engine_error.html',1,'gridfire::exceptions::StaleEngineError'],['../structgridfire_1_1expectations_1_1_stale_engine_error.html',1,'gridfire::expectations::StaleEngineError'],['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50',1,'gridfire::exceptions::StaleEngineError::StaleEngineError()'],['../structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10',1,'gridfire::expectations::StaleEngineError::StaleEngineError()']]],
-  ['staleengineerrortypes_47',['StaleEngineErrorTypes',['../namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7',1,'gridfire::expectations']]],
-  ['staleenginetrigger_48',['StaleEngineTrigger',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html',1,'gridfire::exceptions::StaleEngineTrigger'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d',1,'gridfire::exceptions::StaleEngineTrigger::StaleEngineTrigger()']]],
-  ['staletype_49',['staleType',['../structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590',1,'gridfire::expectations::StaleEngineError']]],
-  ['state_50',['state',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html',1,'gridfire::exceptions::StaleEngineTrigger::state'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adab4b53a94b935f89f799bd5a67847a2',1,'gridfire::solver::DirectNetworkSolver::TimestepContext::state']]],
-  ['status_51',['status',['../structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d',1,'gridfire::PrimingReport']]],
-  ['std_52',['std',['../namespacestd.html',1,'']]],
-  ['step_20by_20step_20example_53',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md66',1,'']]],
-  ['step_20example_54',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md66',1,'']]],
-  ['stepderivatives_55',['StepDerivatives',['../structgridfire_1_1_step_derivatives.html',1,'gridfire']]],
-  ['stoichiometric_5fcoefficients_56',['stoichiometric_coefficients',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c',1,'gridfire::GraphEngine::PrecomputedReaction']]],
-  ['stoichiometry_57',['stoichiometry',['../classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac',1,'gridfire::reaction::Reaction::stoichiometry(const fourdst::atomic::Species &amp;species) const'],['../classgridfire_1_1reaction_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3',1,'gridfire::reaction::Reaction::stoichiometry() const'],['../classgridfire_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac',1,'gridfire::Reaction::stoichiometry(const fourdst::atomic::Species &amp;species) const'],['../classgridfire_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3',1,'gridfire::Reaction::stoichiometry() const']]],
-  ['strategies_58',['Numerical Solver Strategies',['../index.html#autotoc_md36',1,'']]],
-  ['stringtobasepartitiontype_59',['stringToBasePartitionType',['../namespacegridfire_1_1partition.html#a84de6308486d35ce8bc1a9dea52dfa4a',1,'gridfire::partition']]],
-  ['success_60',['success',['../structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3',1,'gridfire::PrimingReport']]],
-  ['sum_5fproduct_61',['sum_product',['../namespacegridfire_1_1approx8.html#aafd24448743672021dd4507316060817',1,'gridfire::approx8']]],
-  ['supports_62',['supports',['../classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c',1,'gridfire::partition::CompositePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5',1,'gridfire::partition::PartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd',1,'gridfire::partition::GroundStatePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5',1,'gridfire::partition::RauscherThielemannPartitionFunction::supports()'],['../class_py_partition_function.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8',1,'PyPartitionFunction::supports()']]],
-  ['symmetry_5ffactor_63',['symmetry_factor',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e',1,'gridfire::GraphEngine::PrecomputedReaction']]],
-  ['syncinternalmaps_64',['syncInternalMaps',['../classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f',1,'gridfire::GraphEngine']]],
-  ['system_5fresized_65',['SYSTEM_RESIZED',['../namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7a109aa03c8823fcc0ab193b7e48664cbf',1,'gridfire::expectations']]]
+  ['set_5fcallback_20',['set_callback',['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a4d97ee85933d5e5f90d4194bb021a1dc',1,'gridfire::solver::NetworkSolverStrategy::set_callback()'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a77638ef3d2279009e5a57bbd3f0eb63b',1,'gridfire::solver::CVODESolverStrategy::set_callback()'],['../class_py_dynamic_network_solver_strategy.html#a112a7babc03858a69d6994a7155370d3',1,'PyDynamicNetworkSolverStrategy::set_callback()']]],
+  ['set_5fstdout_5flogging_5fenabled_21',['set_stdout_logging_enabled',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a46dacb6eb075f2aadac0e56972deeaa3',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['setformat_22',['setFormat',['../classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4',1,'gridfire::Network']]],
+  ['setnetworkreactions_23',['setNetworkReactions',['../classgridfire_1_1_dynamic_engine.html#a49025489901e22a20cdf99b455ff2ff0',1,'gridfire::DynamicEngine::setNetworkReactions()'],['../classgridfire_1_1_graph_engine.html#a52288e2629609c8438a3c9bc3f910016',1,'gridfire::GraphEngine::setNetworkReactions()'],['../classgridfire_1_1_adaptive_engine_view.html#adedc8547568d643473bdfcc86040b488',1,'gridfire::AdaptiveEngineView::setNetworkReactions()'],['../classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9',1,'gridfire::DefinedEngineView::setNetworkReactions()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#af99f5e4871808188d00379c1c35868fe',1,'gridfire::MultiscalePartitioningEngineView::setNetworkReactions()'],['../class_py_dynamic_engine.html#af469cba3be850d53f659ec173f0eb4e4',1,'PyDynamicEngine::setNetworkReactions()']]],
+  ['setprecomputation_24',['setPrecomputation',['../classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1',1,'gridfire::GraphEngine']]],
+  ['setscreeningmodel_25',['setScreeningModel',['../classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd',1,'gridfire::DynamicEngine::setScreeningModel()'],['../classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c',1,'gridfire::GraphEngine::setScreeningModel()'],['../classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b',1,'gridfire::AdaptiveEngineView::setScreeningModel()'],['../classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258',1,'gridfire::DefinedEngineView::setScreeningModel()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f',1,'gridfire::MultiscalePartitioningEngineView::setScreeningModel()'],['../class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac',1,'PyDynamicEngine::setScreeningModel()']]],
+  ['setstiff_26',['setStiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#aefed972081514c29cdaaa1efd857ad8d',1,'gridfire::approx8::Approx8Network::setStiff()'],['../classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe',1,'gridfire::Network::setStiff()']]],
+  ['setup_27',['TUI config loading and meson setup',['../index.html#autotoc_md20',1,'']]],
+  ['setup_20and_20build_28',['CLI config loading, setup, and build',['../index.html#autotoc_md21',1,'']]],
+  ['setusereversereactions_29',['setUseReverseReactions',['../classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197',1,'gridfire::GraphEngine']]],
+  ['shallow_30',['Shallow',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a928d0f1285ee7d36c1c2fa1b1b7a164c',1,'gridfire']]],
+  ['simplereactionlistfileparser_31',['SimpleReactionListFileParser',['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html',1,'gridfire::io::SimpleReactionListFileParser'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993',1,'gridfire::io::SimpleReactionListFileParser::SimpleReactionListFileParser()']]],
+  ['simulationtimetrigger_32',['SimulationTimeTrigger',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a235f84a37370a1ca2226fb881b4051c7',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::SimulationTimeTrigger()']]],
+  ['size_33',['size',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a4c58951d9f7ab252717c226b0da80a9d',1,'gridfire::reaction::LogicalReaclibReaction::size()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf',1,'gridfire::reaction::ReactionSet::size()'],['../classgridfire_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf',1,'gridfire::ReactionSet::size()']]],
+  ['solveqseabundances_34',['solveQSEAbundances',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a40ce2c18063cd56cffd58419b9ae96bf',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['solver_20implementations_35',['Future Solver Implementations',['../index.html#autotoc_md43',1,'']]],
+  ['solver_20strategies_36',['Numerical Solver Strategies',['../index.html#autotoc_md36',1,'']]],
+  ['solver_2eh_37',['solver.h',['../solver_8h.html',1,'']]],
+  ['solver_5finstance_38',['solver_instance',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ad7f3eb9caae25ef25357c41c23d6b392',1,'gridfire::solver::CVODESolverStrategy::CVODEUserData']]],
+  ['solver_5finterfaces_2eh_39',['solver_interfaces.h',['../solver__interfaces_8h.html',1,'']]],
+  ['solvercontextbase_40',['SolverContextBase',['../structgridfire_1_1solver_1_1_solver_context_base.html',1,'gridfire::solver']]],
+  ['solverplugininterface_41',['SolverPluginInterface',['../class_solver_plugin_interface.html',1,'']]],
+  ['source_42',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md62',1,'']]],
+  ['source_43',['source',['../index.html#autotoc_md6',1,'']]],
+  ['source_20for_20developers_44',['source for developers',['../index.html#autotoc_md7',1,'']]],
+  ['sourcelabel_45',['sourceLabel',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a96d4ab87de02e9b0be3c248e2e955b4b',1,'gridfire::reaction::ReaclibReaction']]],
+  ['sources_46',['sources',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad4979f437dc787a5475c3a029804ed99',1,'gridfire::reaction::LogicalReaclibReaction']]],
+  ['sparsitypattern_47',['SparsityPattern',['../namespacegridfire.html#a898dfe22579e649935645cbd6f073178',1,'gridfire']]],
+  ['species_5fnot_5ffound_48',['SPECIES_NOT_FOUND',['../namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550a3659baf2b06bba6c02bad8316d517761',1,'gridfire::rates::weak']]],
+  ['speedoflight_49',['speedOfLight',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a016c3e02f622e21073f9110707177b76',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['stale_50',['STALE',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca4d855a061b3066dc14a3b12ed26b5456',1,'gridfire::expectations']]],
+  ['staleengineerror_51',['StaleEngineError',['../classgridfire_1_1exceptions_1_1_stale_engine_error.html',1,'gridfire::exceptions::StaleEngineError'],['../structgridfire_1_1expectations_1_1_stale_engine_error.html',1,'gridfire::expectations::StaleEngineError'],['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50',1,'gridfire::exceptions::StaleEngineError::StaleEngineError()'],['../structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10',1,'gridfire::expectations::StaleEngineError::StaleEngineError()']]],
+  ['staleengineerrortypes_52',['StaleEngineErrorTypes',['../namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7',1,'gridfire::expectations']]],
+  ['staleenginetrigger_53',['StaleEngineTrigger',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html',1,'gridfire::exceptions::StaleEngineTrigger'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d',1,'gridfire::exceptions::StaleEngineTrigger::StaleEngineTrigger()']]],
+  ['staletype_54',['staleType',['../structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590',1,'gridfire::expectations::StaleEngineError']]],
+  ['state_55',['state',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html',1,'gridfire::exceptions::StaleEngineTrigger::state'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#aaae3c42b9172be4d501f022e67f5a6f6',1,'gridfire::solver::CVODESolverStrategy::TimestepContext::state']]],
+  ['status_56',['status',['../structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d',1,'gridfire::PrimingReport']]],
+  ['std_57',['std',['../namespacestd.html',1,'']]],
+  ['step_20by_20step_20example_58',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md66',1,'']]],
+  ['step_20example_59',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md66',1,'']]],
+  ['stepderivatives_60',['StepDerivatives',['../structgridfire_1_1_step_derivatives.html',1,'gridfire::StepDerivatives&lt; T &gt;'],['../structgridfire_1_1_step_derivatives.html#a26deeb236e77eddb0119ad368a5d8f1c',1,'gridfire::StepDerivatives::StepDerivatives()']]],
+  ['stoichiometric_5fcoefficients_61',['stoichiometric_coefficients',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+  ['stoichiometry_62',['stoichiometry',['../classgridfire_1_1reaction_1_1_reaction.html#ad49f4cad024db72c966d949c75f1ce4d',1,'gridfire::reaction::Reaction::stoichiometry() const =0'],['../classgridfire_1_1reaction_1_1_reaction.html#ab7888b57507d6d27de6e5fcaea40fff5',1,'gridfire::reaction::Reaction::stoichiometry(const fourdst::atomic::Species &amp;species) const =0'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a57b2695d152360a6ba08776cc760e3a1',1,'gridfire::reaction::ReaclibReaction::stoichiometry(const fourdst::atomic::Species &amp;species) const override'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0f629cbfe95dc5643b5e3724be0db2f9',1,'gridfire::reaction::ReaclibReaction::stoichiometry() const override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a8bf7dc26d9f1375625df99bceba08a44',1,'gridfire::rates::weak::WeakReaction::stoichiometry() const override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1f4acfdb39bb861aaee9f3f28cfc406e',1,'gridfire::rates::weak::WeakReaction::stoichiometry(const fourdst::atomic::Species &amp;species) const override'],['../classgridfire_1_1_reaction.html#a55b7f61d9bde45f2ca485c1b07a05950',1,'gridfire::Reaction::stoichiometry() const=0'],['../classgridfire_1_1_reaction.html#af0a893603aa88f7d7d205b9b969af487',1,'gridfire::Reaction::stoichiometry(const fourdst::atomic::Species &amp;species) const=0']]],
+  ['strategies_63',['Numerical Solver Strategies',['../index.html#autotoc_md36',1,'']]],
+  ['stringtobasepartitiontype_64',['stringToBasePartitionType',['../namespacegridfire_1_1partition.html#a84de6308486d35ce8bc1a9dea52dfa4a',1,'gridfire::partition']]],
+  ['success_65',['success',['../structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3',1,'gridfire::PrimingReport']]],
+  ['sum_5fproduct_66',['sum_product',['../namespacegridfire_1_1approx8.html#aafd24448743672021dd4507316060817',1,'gridfire::approx8']]],
+  ['supports_67',['supports',['../classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c',1,'gridfire::partition::CompositePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5',1,'gridfire::partition::PartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd',1,'gridfire::partition::GroundStatePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5',1,'gridfire::partition::RauscherThielemannPartitionFunction::supports()'],['../class_py_partition_function.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8',1,'PyPartitionFunction::supports()']]],
+  ['symmetry_5ffactor_68',['symmetry_factor',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+  ['syncinternalmaps_69',['syncInternalMaps',['../classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f',1,'gridfire::GraphEngine']]],
+  ['system_5fresized_70',['SYSTEM_RESIZED',['../namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7a109aa03c8823fcc0ab193b7e48664cbf',1,'gridfire::expectations']]]
 ];
diff --git a/docs/html/search/all_19.js b/docs/html/search/all_19.js
index 739a792a..98872760 100644
--- a/docs/html/search/all_19.js
+++ b/docs/html/search/all_19.js
@@ -1,26 +1,38 @@
 var searchData=
 [
-  ['t_0',['t',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ad49305586fdc676f96161e91c6b863dd',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['t9_1',['T9',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a838fdd3dd8beac8ca7e735921230ea2d',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['t9_5fhigh_2',['T9_high',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a750aa8cd8aa8b8da6d1f0db1cc66233d',1,'gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints']]],
-  ['t9_5flow_3',['T9_low',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a48e170f77812fdbc06cff18267b241ca',1,'gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints']]],
-  ['t9_5ftol_4',['T9_tol',['../structgridfire_1_1_q_s_e_cache_config.html#af4dca2b24aa364fbbf6e99eb26774f40',1,'gridfire::QSECacheConfig']]],
-  ['temperature_5',['temperature',['../structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be',1,'gridfire::NetIn::temperature'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9',1,'gridfire::exceptions::StaleEngineTrigger::temperature()']]],
-  ['templatedreactionset_6',['TemplatedReactionSet',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html',1,'gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a54c8cd7c34564277fe28eefc623f666e',1,'gridfire::reaction::TemplatedReactionSet::TemplatedReactionSet(std::vector&lt; ReactionT &gt; reactions)'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a9def4c9a3a7a03625b7c467fe7440428',1,'gridfire::reaction::TemplatedReactionSet::TemplatedReactionSet()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ada1d1880be53b81a9ed7b966fd6ade5a',1,'gridfire::reaction::TemplatedReactionSet::TemplatedReactionSet(const TemplatedReactionSet&lt; ReactionT &gt; &amp;other)']]],
-  ['templatedreactionset_3c_20logicalreaction_20_3e_7',['TemplatedReactionSet&lt; LogicalReaction &gt;',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html',1,'gridfire::reaction']]],
-  ['templatedreactionset_3c_20reaction_20_3e_8',['TemplatedReactionSet&lt; Reaction &gt;',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html',1,'gridfire::reaction']]],
-  ['the_20basics_9',['5. Beyond the Basics',['../md_docs_2static_2usage.html#autotoc_md70',1,'']]],
-  ['the_20c_20library_10',['Building the C++ Library',['../index.html#autotoc_md23',1,'']]],
-  ['the_20library_11',['Installing the Library',['../index.html#autotoc_md25',1,'']]],
-  ['these_20engines_20and_20views_12',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md64',1,'']]],
-  ['thirdorder_13',['ThirdOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a3fc719e07f9f63e7f11a3d4fb74b476f',1,'gridfire']]],
-  ['timestepcallback_14',['TimestepCallback',['../classgridfire_1_1solver_1_1_direct_network_solver.html#a171bd0c8c292da79ed41f6653fdd47df',1,'gridfire::solver::DirectNetworkSolver']]],
-  ['timestepcontext_15',['TimestepContext',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html',1,'gridfire::solver::DirectNetworkSolver::TimestepContext'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#aea1385260976dff133404db5b453ba98',1,'gridfire::solver::DirectNetworkSolver::TimestepContext::TimestepContext()']]],
-  ['tmax_16',['tMax',['../structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1',1,'gridfire::NetIn']]],
-  ['totalsteps_17',['totalSteps',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408',1,'gridfire::exceptions::StaleEngineTrigger']]],
-  ['trim_5fwhitespace_18',['trim_whitespace',['../namespacegridfire.html#a8b245f261cd8d1711ae8d593b054cf98',1,'gridfire::trim_whitespace()'],['../reaclib_8cpp.html#a2c6902cf3e699a1a65e871efa878a6ab',1,'trim_whitespace():&#160;reaclib.cpp']]],
-  ['triple_5falpha_5frate_19',['triple_alpha_rate',['../namespacegridfire_1_1approx8.html#a2715e1a6421717991814892046b896e3',1,'gridfire::approx8']]],
-  ['tui_20config_20and_20saving_20',['TUI config and saving',['../index.html#autotoc_md19',1,'']]],
-  ['tui_20config_20loading_20and_20meson_20setup_21',['TUI config loading and meson setup',['../index.html#autotoc_md20',1,'']]],
-  ['type_22',['type',['../structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897',1,'gridfire::expectations::EngineError::type'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88',1,'gridfire::partition::CompositePartitionFunction::type()'],['../classgridfire_1_1partition_1_1_partition_function.html#ab0c67985a972707eac0ebc64417dfb97',1,'gridfire::partition::PartitionFunction::type()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250',1,'gridfire::partition::GroundStatePartitionFunction::type()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3aa478acf12e09b6dd268f744071b2a0',1,'gridfire::partition::RauscherThielemannPartitionFunction::type()'],['../class_py_partition_function.html#a07f4d0ff83822dd2800897161d2a3717',1,'PyPartitionFunction::type()']]]
+  ['t_0',['t',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a0b39f0d207181840efacb64417b492ae',1,'gridfire::solver::CVODESolverStrategy::TimestepContext']]],
+  ['t9_1',['T9',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a549f4c9266722314f61d668d8507145c',1,'gridfire::rates::weak::WeakReactionEntry::T9'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a25743a21ed801ed4288309f35dc9a289',1,'gridfire::solver::CVODESolverStrategy::TimestepContext::T9'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a0b27605ac3211a1805d7910c899bbcce',1,'gridfire::solver::CVODESolverStrategy::CVODEUserData::T9'],['../namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755',1,'gridfire::rates::weak::T9']]],
+  ['t9_2',['t9',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a2344c046a615bc6ff07327d6bcfe074b',1,'gridfire::rates::weak::RateDataRow']]],
+  ['t9_5faxis_3',['t9_axis',['../structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a99da523669d85aa0a628d35a077d541c',1,'gridfire::rates::weak::IsotopeGrid']]],
+  ['t9_5fhigh_4',['T9_high',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a750aa8cd8aa8b8da6d1f0db1cc66233d',1,'gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints']]],
+  ['t9_5flow_5',['T9_low',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a48e170f77812fdbc06cff18267b241ca',1,'gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints']]],
+  ['t9_5ftol_6',['T9_tol',['../structgridfire_1_1_q_s_e_cache_config.html#af4dca2b24aa364fbbf6e99eb26774f40',1,'gridfire::QSECacheConfig']]],
+  ['table_5fformat_2eh_7',['table_format.h',['../table__format_8h.html',1,'']]],
+  ['tableaxes_8',['TableAxes',['../namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae',1,'gridfire::rates::weak']]],
+  ['tau_5fantineutrino_9',['TAU_ANTINEUTRINO',['../namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa2712e9cfc69c4ee0c4ed136338acb6cc',1,'gridfire::rates::weak']]],
+  ['tau_5fneutrino_10',['TAU_NEUTRINO',['../namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa8c2cdafd7125a278e6e0da4c04e29d9e',1,'gridfire::rates::weak']]],
+  ['temperature_11',['temperature',['../structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be',1,'gridfire::NetIn::temperature'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9',1,'gridfire::exceptions::StaleEngineTrigger::temperature()']]],
+  ['the_20basics_12',['5. Beyond the Basics',['../md_docs_2static_2usage.html#autotoc_md70',1,'']]],
+  ['the_20c_20library_13',['Building the C++ Library',['../index.html#autotoc_md23',1,'']]],
+  ['the_20library_14',['Installing the Library',['../index.html#autotoc_md25',1,'']]],
+  ['these_20engines_20and_20views_15',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md64',1,'']]],
+  ['thirdorder_16',['ThirdOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a3fc719e07f9f63e7f11a3d4fb74b476f',1,'gridfire']]],
+  ['timestepcallback_17',['TimestepCallback',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a89c537c2f34ba3e202374304b7e5990a',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['timestepcollapsetrigger_18',['TimestepCollapseTrigger',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a171e6dee7f7d8275b3e8875eaeb0850d',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::TimestepCollapseTrigger(double threshold, bool relative)'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ae47a4f822f92774f6dc780ae74f12066',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::TimestepCollapseTrigger(double threshold, bool relative, size_t windowSize)']]],
+  ['timestepcontext_19',['TimestepContext',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html',1,'gridfire::solver::CVODESolverStrategy::TimestepContext'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a406b36ce5f192c855eb3c8dcf0fde0bd',1,'gridfire::solver::CVODESolverStrategy::TimestepContext::TimestepContext()']]],
+  ['tmax_20',['tMax',['../structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1',1,'gridfire::NetIn']]],
+  ['tostring_21',['toString',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a165b68f0ebb30cda5ffaafa7c0f27617',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+  ['totalsteps_22',['totalSteps',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408',1,'gridfire::exceptions::StaleEngineTrigger']]],
+  ['trigger_23',['Trigger',['../classgridfire_1_1trigger_1_1_trigger.html',1,'gridfire::trigger']]],
+  ['trigger_3c_20gridfire_3a_3asolver_3a_3acvodesolverstrategy_3a_3atimestepcontext_20_3e_24',['Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;',['../classgridfire_1_1trigger_1_1_trigger.html',1,'gridfire::trigger']]],
+  ['trigger_5fabstract_2eh_25',['trigger_abstract.h',['../trigger__abstract_8h.html',1,'']]],
+  ['trigger_5flogical_2eh_26',['trigger_logical.h',['../trigger__logical_8h.html',1,'']]],
+  ['trigger_5fpprint_2eh_27',['trigger_pprint.h',['../trigger__pprint_8h.html',1,'']]],
+  ['trigger_5fresult_2eh_28',['trigger_result.h',['../trigger__result_8h.html',1,'']]],
+  ['triggerresult_29',['TriggerResult',['../structgridfire_1_1trigger_1_1_trigger_result.html',1,'gridfire::trigger']]],
+  ['trim_5fwhitespace_30',['trim_whitespace',['../namespacegridfire.html#a8b245f261cd8d1711ae8d593b054cf98',1,'gridfire::trim_whitespace()'],['../reaclib_8cpp.html#a2c6902cf3e699a1a65e871efa878a6ab',1,'trim_whitespace():&#160;reaclib.cpp']]],
+  ['triple_5falpha_5frate_31',['triple_alpha_rate',['../namespacegridfire_1_1approx8.html#a2715e1a6421717991814892046b896e3',1,'gridfire::approx8']]],
+  ['tui_20config_20and_20saving_32',['TUI config and saving',['../index.html#autotoc_md19',1,'']]],
+  ['tui_20config_20loading_20and_20meson_20setup_33',['TUI config loading and meson setup',['../index.html#autotoc_md20',1,'']]],
+  ['type_34',['type',['../structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897',1,'gridfire::expectations::EngineError::type'],['../structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a086720ca534bc4c63d9341995e2f87bd',1,'gridfire::rates::weak::InterpolationError::type'],['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#ad0bb77849bda4934472675e196af87c8',1,'gridfire::rates::weak::WeakReactionEntry::type'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88',1,'gridfire::partition::CompositePartitionFunction::type()'],['../classgridfire_1_1partition_1_1_partition_function.html#ab0c67985a972707eac0ebc64417dfb97',1,'gridfire::partition::PartitionFunction::type()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250',1,'gridfire::partition::GroundStatePartitionFunction::type()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3aa478acf12e09b6dd268f744071b2a0',1,'gridfire::partition::RauscherThielemannPartitionFunction::type()'],['../classgridfire_1_1reaction_1_1_reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7',1,'gridfire::reaction::Reaction::type()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a3c0fbdd07f9a837bd031c5bdc58e0e8f',1,'gridfire::reaction::ReaclibReaction::type()'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#acbfa2d4e23dff6641be21cc1e754be15',1,'gridfire::reaction::LogicalReaclibReaction::type()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aade329265a26bdc005c0793ba7a36ab2',1,'gridfire::rates::weak::WeakReaction::type()'],['../class_py_partition_function.html#a07f4d0ff83822dd2800897161d2a3717',1,'PyPartitionFunction::type()'],['../classgridfire_1_1_reaction.html#a186856dc2ce85d8cc4db43c7164b6afa',1,'gridfire::Reaction::type()']]]
 ];
diff --git a/docs/html/search/all_1a.js b/docs/html/search/all_1a.js
index 04343082..8af794da 100644
--- a/docs/html/search/all_1a.js
+++ b/docs/html/search/all_1a.js
@@ -1,14 +1,18 @@
 var searchData=
 [
   ['u_0',['u',['../structgridfire_1_1_graph_engine_1_1constants.html#a3597bc632a5dd50aaa0044d8c18ca423',1,'gridfire::GraphEngine::constants']]],
-  ['unabletosetnetworkreactionserror_1',['UnableToSetNetworkReactionsError',['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html',1,'gridfire::exceptions::UnableToSetNetworkReactionsError'],['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#acb3183c3dea755a8a26b00d638183c30',1,'gridfire::exceptions::UnableToSetNetworkReactionsError::UnableToSetNetworkReactionsError()']]],
-  ['unique_5fproduct_5findices_2',['unique_product_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a9974f944a2cf5179baabebe09d60cf18',1,'gridfire::GraphEngine::PrecomputedReaction']]],
-  ['unique_5freactant_5findices_3',['unique_reactant_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a510e380116e2e6d9158cf00fedac2666',1,'gridfire::GraphEngine::PrecomputedReaction']]],
-  ['unknown_4',['UNKNOWN',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2',1,'gridfire']]],
-  ['update_5',['update',['../classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a',1,'gridfire::DynamicEngine::update()'],['../classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6',1,'gridfire::GraphEngine::update()'],['../classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd',1,'gridfire::AdaptiveEngineView::update()'],['../classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae',1,'gridfire::DefinedEngineView::update()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8',1,'gridfire::MultiscalePartitioningEngineView::update()'],['../class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8',1,'PyDynamicEngine::update()']]],
-  ['upperindex_6',['upperIndex',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#aa99e1fa2fd4937592c066b0df16f377f',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]],
-  ['usage_7',['Usage',['../index.html#autotoc_md3',1,'']]],
-  ['usage_20examples_8',['Usage Examples',['../engine_8h.html#UsageExamples',1,'Usage Examples'],['../index.html#autotoc_md45',1,'Usage Examples']]],
-  ['usage_20guide_9',['GridFire Python Usage Guide',['../md_docs_2static_2usage.html',1,'']]],
-  ['usage_2emd_10',['usage.md',['../usage_8md.html',1,'']]]
+  ['u_5fto_5fmev_1',['u_to_MeV',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab7d46e02bb7264ff3aada6b3997b2ab1',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['unabletosetnetworkreactionserror_2',['UnableToSetNetworkReactionsError',['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html',1,'gridfire::exceptions::UnableToSetNetworkReactionsError'],['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#acb3183c3dea755a8a26b00d638183c30',1,'gridfire::exceptions::UnableToSetNetworkReactionsError::UnableToSetNetworkReactionsError()']]],
+  ['unified_5fweak_5fdata_3',['UNIFIED_WEAK_DATA',['../namespacegridfire_1_1rates_1_1weak.html#ac48364695089056d9a9b10689c4338e7',1,'gridfire::rates::weak']]],
+  ['unique_5fproduct_5findices_4',['unique_product_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a9974f944a2cf5179baabebe09d60cf18',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+  ['unique_5freactant_5findices_5',['unique_reactant_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a510e380116e2e6d9158cf00fedac2666',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+  ['unknown_6',['UNKNOWN',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2',1,'gridfire']]],
+  ['unknown_5ferror_7',['UNKNOWN_ERROR',['../namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550a9a10f345b0f755d461a8673a5e9ef6b4',1,'gridfire::rates::weak::UNKNOWN_ERROR'],['../namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4a9a10f345b0f755d461a8673a5e9ef6b4',1,'gridfire::rates::weak::UNKNOWN_ERROR']]],
+  ['unknown_5fspecies_5ferror_8',['UNKNOWN_SPECIES_ERROR',['../namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4acc038b1c5dbfcede2eaa525fe0e2379d',1,'gridfire::rates::weak']]],
+  ['update_9',['update',['../classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a',1,'gridfire::DynamicEngine::update()'],['../classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6',1,'gridfire::GraphEngine::update()'],['../classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd',1,'gridfire::AdaptiveEngineView::update()'],['../classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae',1,'gridfire::DefinedEngineView::update()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8',1,'gridfire::MultiscalePartitioningEngineView::update()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a468bf58f66417493501c59d7a8aabc98',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::update()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a179cb09a91d5c638d7a347137b208767',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::update()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#af6bff6a484e8729445c26620b489665d',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::update()'],['../classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc',1,'gridfire::trigger::Trigger::update()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#a62f7dbbcf0554caa68e3d778580b3c1d',1,'gridfire::trigger::AndTrigger::update()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#a775dac97d109c5fcd5c0287ca98f308c',1,'gridfire::trigger::OrTrigger::update()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#a846432abf33c7602af0fbb5475c0ad32',1,'gridfire::trigger::NotTrigger::update()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0dd783afab7ef6005f0241f9de7b31f6',1,'gridfire::trigger::EveryNthTrigger::update()'],['../class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8',1,'PyDynamicEngine::update()']]],
+  ['upperindex_10',['upperIndex',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#aa99e1fa2fd4937592c066b0df16f377f',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]],
+  ['usage_11',['Usage',['../index.html#autotoc_md3',1,'']]],
+  ['usage_20examples_12',['Usage Examples',['../engine_8h.html#UsageExamples',1,'Usage Examples'],['../index.html#autotoc_md45',1,'Usage Examples']]],
+  ['usage_20guide_13',['GridFire Python Usage Guide',['../md_docs_2static_2usage.html',1,'']]],
+  ['usage_2emd_14',['usage.md',['../usage_8md.html',1,'']]]
 ];
diff --git a/docs/html/search/all_1b.js b/docs/html/search/all_1b.js
index d71335c8..aa75b755 100644
--- a/docs/html/search/all_1b.js
+++ b/docs/html/search/all_1b.js
@@ -1,16 +1,17 @@
 var searchData=
 [
   ['validateconservation_0',['validateConservation',['../classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be',1,'gridfire::GraphEngine']]],
-  ['validategroupswithfluxanalysis_1',['validateGroupsWithFluxAnalysis',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aa55ed182301d216264daae3e6dfd8917',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['validategroupswithfluxanalysis_1',['validateGroupsWithFluxAnalysis',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ad94c6fa2281d9104471631c6b90f411e',1,'gridfire::MultiscalePartitioningEngineView']]],
   ['validatenetworkstate_2',['validateNetworkState',['../classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0',1,'gridfire::DefinedEngineView']]],
   ['validatestate_3',['validateState',['../classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40',1,'gridfire::AdaptiveEngineView']]],
-  ['values_4',['values',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6d13bb5294f5dae7e2eb1d26720f944e',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
-  ['valuesatcompiletime_5',['ValuesAtCompileTime',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a29d2722f9dbe03584086bc1ab8e102c0',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
-  ['vec7_6',['vec7',['../namespacegridfire_1_1approx8.html#aaa49cb0c9ad4b0b9dd0f9b5e192ca12a',1,'gridfire::approx8']]],
-  ['vector_5ftype_7',['vector_type',['../namespacegridfire_1_1approx8.html#aa04f907d4ef6a1b6b2a9a28d4bb53882',1,'gridfire::approx8']]],
-  ['versions_8',['Minimum compiler versions',['../index.html#autotoc_md26',1,'']]],
-  ['view_9',['Adaptive Network View',['../index.html#autotoc_md48',1,'']]],
-  ['views_10',['Views',['../md_docs_2static_2usage.html#autotoc_md64',1,'2. Why These Engines and Views?'],['../engine_8h.html#AvailableViews',1,'Available Views'],['../index.html#autotoc_md34',1,'Engine Views']]],
-  ['visualizing_20reaction_20networks_11',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md68',1,'']]],
-  ['vs_20gcc_12',['Clang vs. GCC',['../index.html#autotoc_md24',1,'']]]
+  ['value_4',['value',['../structgridfire_1_1trigger_1_1_trigger_result.html#a372af12d705b623075c41872f3ec96e1',1,'gridfire::trigger::TriggerResult']]],
+  ['values_5',['values',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6f5611ca669567534df1bd793e90d2e3',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['valuesatcompiletime_6',['ValuesAtCompileTime',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a29d2722f9dbe03584086bc1ab8e102c0',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['vec7_7',['vec7',['../namespacegridfire_1_1approx8.html#aaa49cb0c9ad4b0b9dd0f9b5e192ca12a',1,'gridfire::approx8']]],
+  ['vector_5ftype_8',['vector_type',['../namespacegridfire_1_1approx8.html#aa04f907d4ef6a1b6b2a9a28d4bb53882',1,'gridfire::approx8']]],
+  ['versions_9',['Minimum compiler versions',['../index.html#autotoc_md26',1,'']]],
+  ['view_10',['Adaptive Network View',['../index.html#autotoc_md48',1,'']]],
+  ['views_11',['Views',['../md_docs_2static_2usage.html#autotoc_md64',1,'2. Why These Engines and Views?'],['../engine_8h.html#AvailableViews',1,'Available Views'],['../index.html#autotoc_md34',1,'Engine Views']]],
+  ['visualizing_20reaction_20networks_12',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md68',1,'']]],
+  ['vs_20gcc_13',['Clang vs. GCC',['../index.html#autotoc_md24',1,'']]]
 ];
diff --git a/docs/html/search/all_1c.js b/docs/html/search/all_1c.js
index 10d0bea4..7d25b0a8 100644
--- a/docs/html/search/all_1c.js
+++ b/docs/html/search/all_1c.js
@@ -1,11 +1,27 @@
 var searchData=
 [
-  ['weak_0',['WEAK',['../namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8',1,'gridfire::screening']]],
-  ['weakscreeningmodel_1',['WeakScreeningModel',['../classgridfire_1_1screening_1_1_weak_screening_model.html',1,'gridfire::screening']]],
-  ['what_2',['what',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aac4899d001338688def2b809b55bb2ba',1,'gridfire::exceptions::StaleEngineTrigger::what()'],['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4',1,'gridfire::exceptions::StaleEngineError::what()'],['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#afe87ef508f5b20ca99ec70510747caff',1,'gridfire::exceptions::FailedToPartitionEngineError::what()'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1',1,'gridfire::exceptions::NetworkResizedError::what()'],['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69',1,'gridfire::exceptions::UnableToSetNetworkReactionsError::what()']]],
-  ['why_20these_20engines_20and_20views_3',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md64',1,'']]],
-  ['workflow_4',['Design Philosophy and Workflow',['../index.html#autotoc_md1',1,'']]],
-  ['workflow_20components_20and_20effects_5',['Workflow Components and Effects',['../index.html#autotoc_md51',1,'']]],
-  ['workflow_20example_6',['Workflow Example',['../index.html#autotoc_md50',1,'Common Workflow Example'],['../index.html#autotoc_md55',1,'Common Workflow Example']]],
-  ['workflow_20in_20directnetworksolver_7',['Algorithmic Workflow in DirectNetworkSolver',['../index.html#autotoc_md42',1,'']]]
+  ['weak_0',['WEAK',['../namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74ea32c7d8943bec86a6d7d5e03598670ca8',1,'gridfire::reaction::WEAK'],['../namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8',1,'gridfire::screening::WEAK']]],
+  ['weak_2ecpp_1',['weak.cpp',['../weak_8cpp.html',1,'']]],
+  ['weak_2eh_2',['weak.h',['../weak_8h.html',1,'']]],
+  ['weak_5finterpolator_2ecpp_3',['weak_interpolator.cpp',['../weak__interpolator_8cpp.html',1,'']]],
+  ['weak_5finterpolator_2eh_4',['weak_interpolator.h',['../weak__interpolator_8h.html',1,'']]],
+  ['weak_5frate_5flibrary_2eh_5',['weak_rate_library.h',['../weak__rate__library_8h.html',1,'']]],
+  ['weak_5freaction_5ftype_5fname_6',['weak_reaction_type_name',['../namespacegridfire_1_1rates_1_1weak.html#a81f6133710abef28d9d2b030fdbaaeef',1,'gridfire::rates::weak']]],
+  ['weak_5ftypes_2eh_7',['weak_types.h',['../weak__types_8h.html',1,'']]],
+  ['weakmaperror_8',['WeakMapError',['../namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550',1,'gridfire::rates::weak']]],
+  ['weakratederivatives_9',['WeakRateDerivatives',['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html',1,'gridfire::rates::weak']]],
+  ['weakrateinterpolator_10',['WeakRateInterpolator',['../classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html',1,'gridfire::rates::weak::WeakRateInterpolator'],['../classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a1efafe82d25d36b93a60a6fccbd5ca3d',1,'gridfire::rates::weak::WeakRateInterpolator::WeakRateInterpolator()']]],
+  ['weakratepayload_11',['WeakRatePayload',['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html',1,'gridfire::rates::weak']]],
+  ['weakreaction_12',['WeakReaction',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html',1,'gridfire::rates::weak::WeakReaction'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a222c0662bf5323037c9fdddfb929d4f7',1,'gridfire::rates::weak::WeakReaction::WeakReaction()']]],
+  ['weakreactionentry_13',['WeakReactionEntry',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html',1,'gridfire::rates::weak']]],
+  ['weakreactionmap_14',['WeakReactionMap',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html',1,'gridfire::rates::weak::WeakReactionMap'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#aecc8c1b92d63da87827879ad5330c11e',1,'gridfire::rates::weak::WeakReactionMap::WeakReactionMap()']]],
+  ['weakreactiontype_15',['WeakReactionType',['../namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7',1,'gridfire::rates::weak']]],
+  ['weakscreeningmodel_16',['WeakScreeningModel',['../classgridfire_1_1screening_1_1_weak_screening_model.html',1,'gridfire::screening']]],
+  ['what_17',['what',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aac4899d001338688def2b809b55bb2ba',1,'gridfire::exceptions::StaleEngineTrigger::what()'],['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4',1,'gridfire::exceptions::StaleEngineError::what()'],['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#afe87ef508f5b20ca99ec70510747caff',1,'gridfire::exceptions::FailedToPartitionEngineError::what()'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1',1,'gridfire::exceptions::NetworkResizedError::what()'],['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69',1,'gridfire::exceptions::UnableToSetNetworkReactionsError::what()']]],
+  ['why_18',['why',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a9dfab0b765d3a4c362cecd860d59f58a',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::why()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3af973e466ba62ebf1e41c608355e327',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::why()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a22d8bc7aacbc388108225c26158e918c',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::why()'],['../classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea',1,'gridfire::trigger::Trigger::why()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#a01033721e8f5d90483d65c904399cf96',1,'gridfire::trigger::AndTrigger::why()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#a7bca0da16353f4b04a2f40fb29c07922',1,'gridfire::trigger::OrTrigger::why()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#abfb3eb7befba646ce9f11f36a63750ae',1,'gridfire::trigger::NotTrigger::why()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a3bf0d69122f801deca4b62db47262d9b',1,'gridfire::trigger::EveryNthTrigger::why()']]],
+  ['why_20these_20engines_20and_20views_19',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md64',1,'']]],
+  ['workflow_20',['Design Philosophy and Workflow',['../index.html#autotoc_md1',1,'']]],
+  ['workflow_20components_20and_20effects_21',['Workflow Components and Effects',['../index.html#autotoc_md51',1,'']]],
+  ['workflow_20example_22',['Workflow Example',['../index.html#autotoc_md50',1,'Common Workflow Example'],['../index.html#autotoc_md55',1,'Common Workflow Example']]],
+  ['workflow_20in_20directnetworksolver_23',['Algorithmic Workflow in DirectNetworkSolver',['../index.html#autotoc_md42',1,'']]]
 ];
diff --git a/docs/html/search/all_1e.js b/docs/html/search/all_1e.js
index 1da0cb42..b9b64588 100644
--- a/docs/html/search/all_1e.js
+++ b/docs/html/search/all_1e.js
@@ -1,4 +1,5 @@
 var searchData=
 [
-  ['z_0',['z',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#abb1416e2d8d4d27264c9eece547006b6',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord']]]
+  ['z_0',['Z',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a318b62e183dcb49c04260832454fa721',1,'gridfire::rates::weak::RateDataRow']]],
+  ['z_1',['z',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#abb1416e2d8d4d27264c9eece547006b6',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord']]]
 ];
diff --git a/docs/html/search/all_1f.js b/docs/html/search/all_1f.js
index 0ad79a7e..ca45f9b1 100644
--- a/docs/html/search/all_1f.js
+++ b/docs/html/search/all_1f.js
@@ -1,13 +1,23 @@
 var searchData=
 [
-  ['_7eengine_0',['~Engine',['../classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037',1,'gridfire::Engine']]],
-  ['_7eengineerror_1',['~EngineError',['../structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897',1,'gridfire::expectations::EngineError']]],
-  ['_7eengineview_2',['~EngineView',['../classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74',1,'gridfire::EngineView']]],
-  ['_7enetwork_3',['~Network',['../classgridfire_1_1_network.html#ab8d83289b62dda9b4e02f25311f85b79',1,'gridfire::Network']]],
-  ['_7enetworkfileparser_4',['~NetworkFileParser',['../classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3',1,'gridfire::io::NetworkFileParser']]],
-  ['_7enetworksolverstrategy_5',['~NetworkSolverStrategy',['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318',1,'gridfire::solver::NetworkSolverStrategy']]],
-  ['_7epartitionfunction_6',['~PartitionFunction',['../classgridfire_1_1partition_1_1_partition_function.html#a197a0663dcfb4ab4be3b0e14b98391db',1,'gridfire::partition::PartitionFunction']]],
-  ['_7ereaction_7',['~Reaction',['../classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a',1,'gridfire::reaction::Reaction::~Reaction()'],['../classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a',1,'gridfire::Reaction::~Reaction()']]],
-  ['_7escreeningmodel_8',['~ScreeningModel',['../classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7',1,'gridfire::screening::ScreeningModel']]],
-  ['_7esolvercontextbase_9',['~SolverContextBase',['../structgridfire_1_1solver_1_1_solver_context_base.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8',1,'gridfire::solver::SolverContextBase']]]
+  ['_7eandtrigger_0',['~AndTrigger',['../classgridfire_1_1trigger_1_1_and_trigger.html#a2ee18348ca65cc1aa56eb41292a39bc5',1,'gridfire::trigger::AndTrigger']]],
+  ['_7ecolumnbase_1',['~ColumnBase',['../classgridfire_1_1utils_1_1_column_base.html#a704c1fc03271c14fc9f3da43612a1589',1,'gridfire::utils::ColumnBase']]],
+  ['_7ecvodesolverstrategy_2',['~CVODESolverStrategy',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aca2d01a907c3bb828f9f99ad05506578',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['_7eengine_3',['~Engine',['../classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037',1,'gridfire::Engine']]],
+  ['_7eengineerror_4',['~EngineError',['../structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897',1,'gridfire::expectations::EngineError']]],
+  ['_7eengineview_5',['~EngineView',['../classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74',1,'gridfire::EngineView']]],
+  ['_7eeverynthtrigger_6',['~EveryNthTrigger',['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae28e54330d575d9d1d3d8ebc6e7a6f75',1,'gridfire::trigger::EveryNthTrigger']]],
+  ['_7enetwork_7',['~Network',['../classgridfire_1_1_network.html#ab8d83289b62dda9b4e02f25311f85b79',1,'gridfire::Network']]],
+  ['_7enetworkfileparser_8',['~NetworkFileParser',['../classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3',1,'gridfire::io::NetworkFileParser']]],
+  ['_7enetworksolverstrategy_9',['~NetworkSolverStrategy',['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318',1,'gridfire::solver::NetworkSolverStrategy']]],
+  ['_7enottrigger_10',['~NotTrigger',['../classgridfire_1_1trigger_1_1_not_trigger.html#afa4173490171d1251cc1757b92841755',1,'gridfire::trigger::NotTrigger']]],
+  ['_7eortrigger_11',['~OrTrigger',['../classgridfire_1_1trigger_1_1_or_trigger.html#afe30f95de39c1375557d032b8a8111f9',1,'gridfire::trigger::OrTrigger']]],
+  ['_7epartitionfunction_12',['~PartitionFunction',['../classgridfire_1_1partition_1_1_partition_function.html#a197a0663dcfb4ab4be3b0e14b98391db',1,'gridfire::partition::PartitionFunction']]],
+  ['_7ereaclibreaction_13',['~ReaclibReaction',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae2b9b41a598c5f0dcd050b32985ea44e',1,'gridfire::reaction::ReaclibReaction']]],
+  ['_7ereaction_14',['~Reaction',['../classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a',1,'gridfire::reaction::Reaction::~Reaction()'],['../classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a',1,'gridfire::Reaction::~Reaction()']]],
+  ['_7escreeningmodel_15',['~ScreeningModel',['../classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7',1,'gridfire::screening::ScreeningModel']]],
+  ['_7esolvercontextbase_16',['~SolverContextBase',['../structgridfire_1_1solver_1_1_solver_context_base.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8',1,'gridfire::solver::SolverContextBase']]],
+  ['_7esolverplugininterface_17',['~SolverPluginInterface',['../class_solver_plugin_interface.html#a5611d046cd2fd4d4200785725854e39b',1,'SolverPluginInterface']]],
+  ['_7etrigger_18',['~Trigger',['../classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda',1,'gridfire::trigger::Trigger']]],
+  ['_7eweakreactionmap_19',['~WeakReactionMap',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a73cc5a9d4a236091bbb40f22ed66b2f1',1,'gridfire::rates::weak::WeakReactionMap']]]
 ];
diff --git a/docs/html/search/all_6.js b/docs/html/search/all_6.js
index ae81ffbf..63cbf9c6 100644
--- a/docs/html/search/all_6.js
+++ b/docs/html/search/all_6.js
@@ -1,47 +1,55 @@
 var searchData=
 [
-  ['a_0',['a',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a677505655a1c6922dfa9b32b70d7e815',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord']]],
-  ['a_20note_20about_20composability_1',['A Note about composability',['../index.html#autotoc_md35',1,'']]],
-  ['a0_2',['a0',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2fa6b65e300dcd181222b743c2b3d6ed',1,'gridfire::reaction::RateCoefficientSet']]],
-  ['a1_3',['a1',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ace9dbd928e179784e47eaa108ce8d721',1,'gridfire::reaction::RateCoefficientSet']]],
-  ['a2_4',['a2',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2a9316d19bc2e8bf0a7872eb6fe8a53f',1,'gridfire::reaction::RateCoefficientSet']]],
-  ['a3_5',['a3',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a3d047485ebb57d6c763adfe4aae493b1',1,'gridfire::reaction::RateCoefficientSet']]],
-  ['a4_6',['a4',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ae57b2eac71cb4ed9947f40c9cb8fc3ca',1,'gridfire::reaction::RateCoefficientSet']]],
-  ['a5_7',['a5',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a8c79db4e649b4eb1d29c43ebe4e95458',1,'gridfire::reaction::RateCoefficientSet']]],
-  ['a6_8',['a6',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#adf8e6ed7f91cb9e15d1469a808b1877a',1,'gridfire::reaction::RateCoefficientSet']]],
-  ['about_20composability_9',['A Note about composability',['../index.html#autotoc_md35',1,'']]],
-  ['abs_5fstype_5fregister_5fdynamic_5fengine_5fbindings_10',['abs_stype_register_dynamic_engine_bindings',['../engine_2bindings_8cpp.html#a4066aaf2dca39ee1ed37ad53169f1cdf',1,'abs_stype_register_dynamic_engine_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a4066aaf2dca39ee1ed37ad53169f1cdf',1,'abs_stype_register_dynamic_engine_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['abs_5fstype_5fregister_5fengine_5fbindings_11',['abs_stype_register_engine_bindings',['../engine_2bindings_8cpp.html#a01ff627d4ef6a21b3323cd383dd29841',1,'abs_stype_register_engine_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a01ff627d4ef6a21b3323cd383dd29841',1,'abs_stype_register_engine_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['adaptive_20network_20view_12',['Adaptive Network View',['../index.html#autotoc_md48',1,'']]],
-  ['adaptiveengineview_13',['AdaptiveEngineView',['../classgridfire_1_1_adaptive_engine_view.html',1,'gridfire::AdaptiveEngineView'],['../classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455',1,'gridfire::AdaptiveEngineView::AdaptiveEngineView()']]],
-  ['adaptiveengineview_20example_14',['AdaptiveEngineView Example',['../engine_8h.html#AdaptiveEngineViewExample',1,'']]],
-  ['add_5freaction_15',['add_reaction',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a14a24cb8ea25a1514134acc51197f1de',1,'gridfire::reaction::LogicalReaction::add_reaction()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a339dbbf883b6ae20e33d9782d8376bcf',1,'gridfire::reaction::TemplatedReactionSet::add_reaction()']]],
-  ['addouble_16',['ADDouble',['../classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d',1,'gridfire::screening::ScreeningModel::ADDouble'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96',1,'gridfire::screening::BareScreeningModel::ADDouble'],['../namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc',1,'gridfire::ADDouble'],['../namespacegridfire_1_1screening.html#ae7dd1a7ccb7bf3c05084094ab008d8a3',1,'gridfire::screening::ADDouble'],['../py__screening_8cpp.html#a4c5a7b887f31226ce0b82409f819833b',1,'ADDouble:&#160;py_screening.cpp']]],
-  ['affected_5fspecies_5findices_17',['affected_species_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3e2e67e532970738d20491ea56b170f3',1,'gridfire::GraphEngine::PrecomputedReaction']]],
-  ['aion_18',['aIon',['../structgridfire_1_1approx8_1_1_approx8_net.html#a296e54c1b22f0c5d4d07a13577c6e069',1,'gridfire::approx8::Approx8Net']]],
-  ['algebraic_5findices_19',['algebraic_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ab11be6e7afeef1ac9e4314ad8345e0b0',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
-  ['algorithmic_20workflow_20in_20directnetworksolver_20',['Algorithmic Workflow in DirectNetworkSolver',['../index.html#autotoc_md42',1,'']]],
-  ['all_21',['All',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505ab1c94ca2fbc3e78fc30069c8d0f01680',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['all_5fspecies_22',['all_species',['../classgridfire_1_1reaction_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224',1,'gridfire::reaction::Reaction::all_species()'],['../classgridfire_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224',1,'gridfire::Reaction::all_species()']]],
-  ['analyzetimescalepoolconnectivity_23',['analyzeTimescalePoolConnectivity',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#af13e764c118a6cc51847384e9c70e05b',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['and_20build_24',['CLI config loading, setup, and build',['../index.html#autotoc_md21',1,'']]],
-  ['and_20effects_25',['Workflow Components and Effects',['../index.html#autotoc_md51',1,'']]],
-  ['and_20installation_26',['Automatic Build and Installation',['../index.html#autotoc_md8',1,'']]],
-  ['and_20installation_20instructions_27',['Script Build and Installation Instructions',['../index.html#autotoc_md9',1,'']]],
-  ['and_20logical_20flow_28',['Code Architecture and Logical Flow',['../index.html#autotoc_md27',1,'']]],
-  ['and_20meson_20setup_29',['TUI config loading and meson setup',['../index.html#autotoc_md20',1,'']]],
-  ['and_20netout_30',['NetIn and NetOut',['../index.html#autotoc_md38',1,'']]],
-  ['and_20saving_31',['TUI config and saving',['../index.html#autotoc_md19',1,'']]],
-  ['and_20views_32',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md64',1,'']]],
-  ['and_20workflow_33',['Design Philosophy and Workflow',['../index.html#autotoc_md1',1,'']]],
-  ['approx8_34',['APPROX8',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea',1,'gridfire']]],
-  ['approx8net_35',['Approx8Net',['../structgridfire_1_1approx8_1_1_approx8_net.html',1,'gridfire::approx8']]],
-  ['approx8network_36',['Approx8Network',['../classgridfire_1_1approx8_1_1_approx8_network.html',1,'gridfire::approx8::Approx8Network'],['../classgridfire_1_1approx8_1_1_approx8_network.html#a65066078081c544be4e56e25eb407c8b',1,'gridfire::approx8::Approx8Network::Approx8Network()']]],
-  ['architecture_20and_20logical_20flow_37',['Code Architecture and Logical Flow',['../index.html#autotoc_md27',1,'']]],
-  ['atomicreverserate_38',['AtomicReverseRate',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html',1,'gridfire::GraphEngine::AtomicReverseRate'],['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf',1,'gridfire::GraphEngine::AtomicReverseRate::AtomicReverseRate()']]],
-  ['autodiff_39',['AutoDiff',['../index.html#autotoc_md32',1,'']]],
-  ['automatic_20build_20and_20installation_40',['Automatic Build and Installation',['../index.html#autotoc_md8',1,'']]],
-  ['available_20engines_41',['Available Engines',['../engine_8h.html#AvailableEngines',1,'']]],
-  ['available_20partition_20functions_42',['Available Partition Functions',['../index.html#autotoc_md31',1,'']]],
-  ['available_20views_43',['Available Views',['../engine_8h.html#AvailableViews',1,'']]]
+  ['a_0',['A',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#aee9ee73218397780a2a7708c29779c73',1,'gridfire::rates::weak::RateDataRow']]],
+  ['a_1',['a',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a677505655a1c6922dfa9b32b70d7e815',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord']]],
+  ['a_20note_20about_20composability_2',['A Note about composability',['../index.html#autotoc_md35',1,'']]],
+  ['a0_3',['a0',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2fa6b65e300dcd181222b743c2b3d6ed',1,'gridfire::reaction::RateCoefficientSet']]],
+  ['a1_4',['a1',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ace9dbd928e179784e47eaa108ce8d721',1,'gridfire::reaction::RateCoefficientSet']]],
+  ['a2_5',['a2',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2a9316d19bc2e8bf0a7872eb6fe8a53f',1,'gridfire::reaction::RateCoefficientSet']]],
+  ['a3_6',['a3',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a3d047485ebb57d6c763adfe4aae493b1',1,'gridfire::reaction::RateCoefficientSet']]],
+  ['a4_7',['a4',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ae57b2eac71cb4ed9947f40c9cb8fc3ca',1,'gridfire::reaction::RateCoefficientSet']]],
+  ['a5_8',['a5',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a8c79db4e649b4eb1d29c43ebe4e95458',1,'gridfire::reaction::RateCoefficientSet']]],
+  ['a6_9',['a6',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#adf8e6ed7f91cb9e15d1469a808b1877a',1,'gridfire::reaction::RateCoefficientSet']]],
+  ['about_20composability_10',['A Note about composability',['../index.html#autotoc_md35',1,'']]],
+  ['abs_5fstype_5fregister_5fdynamic_5fengine_5fbindings_11',['abs_stype_register_dynamic_engine_bindings',['../engine_2bindings_8cpp.html#a7ba5eb780fc02dab2b7be388ffa084f8',1,'abs_stype_register_dynamic_engine_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a7ba5eb780fc02dab2b7be388ffa084f8',1,'abs_stype_register_dynamic_engine_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['abs_5fstype_5fregister_5fengine_5fbindings_12',['abs_stype_register_engine_bindings',['../engine_2bindings_8cpp.html#aef9864cec8e0891ee46c8a0d76de2c93',1,'abs_stype_register_engine_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#aef9864cec8e0891ee46c8a0d76de2c93',1,'abs_stype_register_engine_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['adaptive_20network_20view_13',['Adaptive Network View',['../index.html#autotoc_md48',1,'']]],
+  ['adaptiveengineview_14',['AdaptiveEngineView',['../classgridfire_1_1_adaptive_engine_view.html',1,'gridfire::AdaptiveEngineView'],['../classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455',1,'gridfire::AdaptiveEngineView::AdaptiveEngineView()']]],
+  ['adaptiveengineview_20example_15',['AdaptiveEngineView Example',['../engine_8h.html#AdaptiveEngineViewExample',1,'']]],
+  ['add_5freaction_16',['add_reaction',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a69508797ca0793f6d3f58de4e0b97667',1,'gridfire::reaction::LogicalReaclibReaction::add_reaction()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1',1,'gridfire::reaction::ReactionSet::add_reaction(const Reaction &amp;reaction)'],['../classgridfire_1_1reaction_1_1_reaction_set.html#ad7e95562ea0860bf492b447341f41fb5',1,'gridfire::reaction::ReactionSet::add_reaction(std::unique_ptr&lt; Reaction &gt; &amp;&amp;reaction)'],['../classgridfire_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1',1,'gridfire::ReactionSet::add_reaction(const Reaction &amp;reaction)'],['../classgridfire_1_1_reaction_set.html#ad7e95562ea0860bf492b447341f41fb5',1,'gridfire::ReactionSet::add_reaction(std::unique_ptr&lt; Reaction &gt; &amp;&amp;reaction)']]],
+  ['addouble_17',['ADDouble',['../classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d',1,'gridfire::screening::ScreeningModel::ADDouble'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96',1,'gridfire::screening::BareScreeningModel::ADDouble'],['../namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc',1,'gridfire::ADDouble'],['../namespacegridfire_1_1screening.html#ae7dd1a7ccb7bf3c05084094ab008d8a3',1,'gridfire::screening::ADDouble'],['../py__screening_8cpp.html#a4c5a7b887f31226ce0b82409f819833b',1,'ADDouble:&#160;py_screening.cpp']]],
+  ['affected_5fspecies_5findices_18',['affected_species_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3e2e67e532970738d20491ea56b170f3',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+  ['aion_19',['aIon',['../structgridfire_1_1approx8_1_1_approx8_net.html#a296e54c1b22f0c5d4d07a13577c6e069',1,'gridfire::approx8::Approx8Net']]],
+  ['algebraic_5fspecies_20',['algebraic_species',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#aff54b71dd17051bc991f747a328c7d8e',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+  ['algorithmic_20workflow_20in_20directnetworksolver_21',['Algorithmic Workflow in DirectNetworkSolver',['../index.html#autotoc_md42',1,'']]],
+  ['all_22',['All',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505ab1c94ca2fbc3e78fc30069c8d0f01680',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['all_5fspecies_23',['all_species',['../classgridfire_1_1reaction_1_1_reaction.html#aa13cd9097229fcc99128d9286b8f17e6',1,'gridfire::reaction::Reaction::all_species()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a445777acbbee2032d83a256181a90e3c',1,'gridfire::reaction::ReaclibReaction::all_species()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a6e567323ca019eadcbb9dbb814ebeb0b',1,'gridfire::rates::weak::WeakReaction::all_species()'],['../classgridfire_1_1_reaction.html#ace0b2bee91702e0ab97b6fc74999d6f0',1,'gridfire::Reaction::all_species()']]],
+  ['amu_24',['amu',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abe06f72b5b646cb3f1462b56d94a1de4',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['analyzetimescalepoolconnectivity_25',['analyzeTimescalePoolConnectivity',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a05e45017bbb772c586f483bd527004ee',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['and_20build_26',['CLI config loading, setup, and build',['../index.html#autotoc_md21',1,'']]],
+  ['and_20effects_27',['Workflow Components and Effects',['../index.html#autotoc_md51',1,'']]],
+  ['and_20installation_28',['Automatic Build and Installation',['../index.html#autotoc_md8',1,'']]],
+  ['and_20installation_20instructions_29',['Script Build and Installation Instructions',['../index.html#autotoc_md9',1,'']]],
+  ['and_20logical_20flow_30',['Code Architecture and Logical Flow',['../index.html#autotoc_md27',1,'']]],
+  ['and_20meson_20setup_31',['TUI config loading and meson setup',['../index.html#autotoc_md20',1,'']]],
+  ['and_20netout_32',['NetIn and NetOut',['../index.html#autotoc_md38',1,'']]],
+  ['and_20saving_33',['TUI config and saving',['../index.html#autotoc_md19',1,'']]],
+  ['and_20views_34',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md64',1,'']]],
+  ['and_20workflow_35',['Design Philosophy and Workflow',['../index.html#autotoc_md1',1,'']]],
+  ['andtrigger_36',['AndTrigger',['../classgridfire_1_1trigger_1_1_and_trigger.html',1,'gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;'],['../classgridfire_1_1trigger_1_1_and_trigger.html#a969738baf0bda97664715937d4bc403e',1,'gridfire::trigger::AndTrigger::AndTrigger()']]],
+  ['approx8_37',['APPROX8',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea',1,'gridfire']]],
+  ['approx8net_38',['Approx8Net',['../structgridfire_1_1approx8_1_1_approx8_net.html',1,'gridfire::approx8']]],
+  ['approx8network_39',['Approx8Network',['../classgridfire_1_1approx8_1_1_approx8_network.html',1,'gridfire::approx8::Approx8Network'],['../classgridfire_1_1approx8_1_1_approx8_network.html#a65066078081c544be4e56e25eb407c8b',1,'gridfire::approx8::Approx8Network::Approx8Network()']]],
+  ['architecture_20and_20logical_20flow_40',['Code Architecture and Logical Flow',['../index.html#autotoc_md27',1,'']]],
+  ['atomicreverserate_41',['AtomicReverseRate',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html',1,'gridfire::GraphEngine::AtomicReverseRate'],['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf',1,'gridfire::GraphEngine::AtomicReverseRate::AtomicReverseRate()']]],
+  ['atomicweakrate_42',['AtomicWeakRate',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a46d76ca50ee00198a9f4a873c6ceb874',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::AtomicWeakRate()']]],
+  ['autodiff_43',['AutoDiff',['../index.html#autotoc_md32',1,'']]],
+  ['automatic_20build_20and_20installation_44',['Automatic Build and Installation',['../index.html#autotoc_md8',1,'']]],
+  ['available_20engines_45',['Available Engines',['../engine_8h.html#AvailableEngines',1,'']]],
+  ['available_20partition_20functions_46',['Available Partition Functions',['../index.html#autotoc_md31',1,'']]],
+  ['available_20views_47',['Available Views',['../engine_8h.html#AvailableViews',1,'']]],
+  ['available_5fisotopes_48',['available_isotopes',['../classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a976f84b6f6e33b5f3dd733a771afd7ba',1,'gridfire::rates::weak::WeakRateInterpolator']]],
+  ['axis_49',['axis',['../structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#afb2af3df6ec5ea439b5ea55571975391',1,'gridfire::rates::weak::BoundsErrorInfo']]],
+  ['axismaxvalue_50',['axisMaxValue',['../structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a6371b8f8c45a9b069b19dd968ff81b28',1,'gridfire::rates::weak::BoundsErrorInfo']]],
+  ['axisminvalue_51',['axisMinValue',['../structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a07dfb669f73b029a71eb59cbbed69f42',1,'gridfire::rates::weak::BoundsErrorInfo']]]
 ];
diff --git a/docs/html/search/all_7.js b/docs/html/search/all_7.js
index 52ce99df..06ce44b4 100644
--- a/docs/html/search/all_7.js
+++ b/docs/html/search/all_7.js
@@ -7,21 +7,27 @@ var searchData=
   ['basepartitiontype_4',['BasePartitionType',['../namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728c',1,'gridfire::partition']]],
   ['basepartitiontypetostring_5',['basePartitionTypeToString',['../namespacegridfire_1_1partition.html#a97237521bc760f7521346f8db472dc8e',1,'gridfire::partition']]],
   ['basics_6',['5. Beyond the Basics',['../md_docs_2static_2usage.html#autotoc_md70',1,'']]],
-  ['begin_7',['begin',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a4ae3806e5e1a802b86a6de292d043476',1,'gridfire::reaction::LogicalReaction::begin()'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a5d410de1053f8028faed1f0d0a6083f5',1,'gridfire::reaction::LogicalReaction::begin() const'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a87257704009fcd57b553f86cdaacb597',1,'gridfire::reaction::TemplatedReactionSet::begin()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#aee42bb25973dadc6629bdb5cb1db6369',1,'gridfire::reaction::TemplatedReactionSet::begin() const']]],
-  ['beyond_20the_20basics_8',['5. Beyond the Basics',['../md_docs_2static_2usage.html#autotoc_md70',1,'']]],
-  ['bin_9',['bin',['../structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3',1,'gridfire::QSECacheKey']]],
-  ['bindings_2ecpp_10',['bindings.cpp',['../bindings_8cpp.html',1,'(Global Namespace)'],['../engine_2bindings_8cpp.html',1,'(Global Namespace)'],['../exceptions_2bindings_8cpp.html',1,'(Global Namespace)'],['../expectations_2bindings_8cpp.html',1,'(Global Namespace)'],['../io_2bindings_8cpp.html',1,'(Global Namespace)'],['../partition_2bindings_8cpp.html',1,'(Global Namespace)'],['../reaction_2bindings_8cpp.html',1,'(Global Namespace)'],['../screening_2bindings_8cpp.html',1,'(Global Namespace)'],['../solver_2bindings_8cpp.html',1,'(Global Namespace)'],['../types_2bindings_8cpp.html',1,'(Global Namespace)'],['../utils_2bindings_8cpp.html',1,'(Global Namespace)']]],
-  ['bindings_2eh_11',['bindings.h',['../engine_2bindings_8h.html',1,'(Global Namespace)'],['../exceptions_2bindings_8h.html',1,'(Global Namespace)'],['../expectations_2bindings_8h.html',1,'(Global Namespace)'],['../io_2bindings_8h.html',1,'(Global Namespace)'],['../partition_2bindings_8h.html',1,'(Global Namespace)'],['../reaction_2bindings_8h.html',1,'(Global Namespace)'],['../screening_2bindings_8h.html',1,'(Global Namespace)'],['../solver_2bindings_8h.html',1,'(Global Namespace)'],['../types_2bindings_8h.html',1,'(Global Namespace)'],['../utils_2bindings_8h.html',1,'(Global Namespace)']]],
-  ['bound_12',['bound',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a5f673ab0425f06f3639cc9b5200ee3af',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]],
-  ['bounds_13',['Bounds',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
-  ['build_14',['CLI config loading, setup, and build',['../index.html#autotoc_md21',1,'']]],
-  ['build_20and_20installation_15',['Automatic Build and Installation',['../index.html#autotoc_md8',1,'']]],
-  ['build_20and_20installation_20instructions_16',['Script Build and Installation Instructions',['../index.html#autotoc_md9',1,'']]],
-  ['build_20instructions_17',['Manual Build Instructions',['../index.html#autotoc_md11',1,'']]],
-  ['build_5freaclib_5fnuclear_5fnetwork_18',['build_reaclib_nuclear_network',['../namespacegridfire.html#aedddb89e400a6111f69bfe0c3fd4214e',1,'gridfire::build_reaclib_nuclear_network(const fourdst::composition::Composition &amp;composition, BuildDepthType maxLayers=NetworkBuildDepth::Full, bool reverse=false)'],['../namespacegridfire.html#a745c6568723947f8e1ff874c9d3f4733',1,'gridfire::build_reaclib_nuclear_network(const Composition &amp;composition, BuildDepthType maxLayers, bool reverse)']]],
-  ['buildconnectivitygraph_19',['buildConnectivityGraph',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aae0865e361dfeb23984d70409fdd9f39',1,'gridfire::MultiscalePartitioningEngineView::buildConnectivityGraph(const std::unordered_set&lt; size_t &gt; &amp;fast_reaction_indices) const'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ae3875c61dc916c0982ed122c2e272d94',1,'gridfire::MultiscalePartitioningEngineView::buildConnectivityGraph(const std::vector&lt; size_t &gt; &amp;species_pool) const']]],
-  ['builddepthtype_20',['BuildDepthType',['../namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6',1,'gridfire']]],
-  ['building_20the_20c_20library_21',['Building the C++ Library',['../index.html#autotoc_md23',1,'']]],
-  ['building_2eh_22',['building.h',['../building_8h.html',1,'']]],
-  ['by_20step_20example_23',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md66',1,'']]]
+  ['begin_7',['begin',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a1353d7d2208497b38799bf69f574c275',1,'gridfire::reaction::LogicalReaclibReaction::begin()'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a211b1332dc12a1fee942523dbc688272',1,'gridfire::reaction::LogicalReaclibReaction::begin() const'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613',1,'gridfire::reaction::ReactionSet::begin()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#adb73fe9ff0178359409e2bea46a620c2',1,'gridfire::reaction::ReactionSet::begin() const'],['../classgridfire_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613',1,'gridfire::ReactionSet::begin()'],['../classgridfire_1_1_reaction_set.html#adb73fe9ff0178359409e2bea46a620c2',1,'gridfire::ReactionSet::begin() const']]],
+  ['beta_5fminus_5fdecay_8',['BETA_MINUS_DECAY',['../namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a12122315f1a94a10826f77a8fd949a94',1,'gridfire::rates::weak']]],
+  ['beta_5fplus_5fdecay_9',['BETA_PLUS_DECAY',['../namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a2f146a0cd66e2d010c8802852db26759',1,'gridfire::rates::weak']]],
+  ['beyond_20the_20basics_10',['5. Beyond the Basics',['../md_docs_2static_2usage.html#autotoc_md70',1,'']]],
+  ['bin_11',['bin',['../structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3',1,'gridfire::QSECacheKey']]],
+  ['bindings_2ecpp_12',['bindings.cpp',['../bindings_8cpp.html',1,'(Global Namespace)'],['../engine_2bindings_8cpp.html',1,'(Global Namespace)'],['../exceptions_2bindings_8cpp.html',1,'(Global Namespace)'],['../expectations_2bindings_8cpp.html',1,'(Global Namespace)'],['../io_2bindings_8cpp.html',1,'(Global Namespace)'],['../partition_2bindings_8cpp.html',1,'(Global Namespace)'],['../reaction_2bindings_8cpp.html',1,'(Global Namespace)'],['../screening_2bindings_8cpp.html',1,'(Global Namespace)'],['../solver_2bindings_8cpp.html',1,'(Global Namespace)'],['../types_2bindings_8cpp.html',1,'(Global Namespace)'],['../utils_2bindings_8cpp.html',1,'(Global Namespace)']]],
+  ['bindings_2eh_13',['bindings.h',['../engine_2bindings_8h.html',1,'(Global Namespace)'],['../exceptions_2bindings_8h.html',1,'(Global Namespace)'],['../expectations_2bindings_8h.html',1,'(Global Namespace)'],['../io_2bindings_8h.html',1,'(Global Namespace)'],['../partition_2bindings_8h.html',1,'(Global Namespace)'],['../reaction_2bindings_8h.html',1,'(Global Namespace)'],['../screening_2bindings_8h.html',1,'(Global Namespace)'],['../solver_2bindings_8h.html',1,'(Global Namespace)'],['../types_2bindings_8h.html',1,'(Global Namespace)'],['../utils_2bindings_8h.html',1,'(Global Namespace)']]],
+  ['bound_14',['bound',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a5f673ab0425f06f3639cc9b5200ee3af',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]],
+  ['bounds_15',['Bounds',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+  ['bounds_5ferror_16',['BOUNDS_ERROR',['../namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4a1516ba0949425312ba92ea385c80dc7a',1,'gridfire::rates::weak']]],
+  ['boundserrorinfo_17',['BoundsErrorInfo',['../structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html',1,'gridfire::rates::weak']]],
+  ['boundserrorinfo_18',['boundsErrorInfo',['../structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a1541a5280bd1b3f90bc62d7c0e1f80a1',1,'gridfire::rates::weak::InterpolationError']]],
+  ['build_19',['CLI config loading, setup, and build',['../index.html#autotoc_md21',1,'']]],
+  ['build_20and_20installation_20',['Automatic Build and Installation',['../index.html#autotoc_md8',1,'']]],
+  ['build_20and_20installation_20instructions_21',['Script Build and Installation Instructions',['../index.html#autotoc_md9',1,'']]],
+  ['build_20instructions_22',['Manual Build Instructions',['../index.html#autotoc_md11',1,'']]],
+  ['build_5fnuclear_5fnetwork_23',['build_nuclear_network',['../namespacegridfire.html#a58a036e8883e75a8abd3e18798563f71',1,'gridfire']]],
+  ['build_5freaclib_5fnuclear_5fnetwork_24',['build_reaclib_nuclear_network',['../namespacegridfire.html#a384323338f13166d87c7ac047434bd38',1,'gridfire']]],
+  ['buildconnectivitygraph_25',['buildConnectivityGraph',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a5d1c11f3c0883385833462dd088f6f89',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['builddepthtype_26',['BuildDepthType',['../namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6',1,'gridfire']]],
+  ['building_20the_20c_20library_27',['Building the C++ Library',['../index.html#autotoc_md23',1,'']]],
+  ['building_2eh_28',['building.h',['../building_8h.html',1,'']]],
+  ['by_20step_20example_29',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md66',1,'']]]
 ];
diff --git a/docs/html/search/all_8.js b/docs/html/search/all_8.js
index 6f535c5a..4bd33033 100644
--- a/docs/html/search/all_8.js
+++ b/docs/html/search/all_8.js
@@ -1,75 +1,87 @@
 var searchData=
 [
   ['c_0',['C++',['../index.html#autotoc_md46',1,'']]],
-  ['c_1',['c',['../structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306',1,'gridfire::GraphEngine::constants']]],
+  ['c_1',['c',['../structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306',1,'gridfire::GraphEngine::constants::c'],['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab176a60ea64181d84be3bb6496ad0b0e',1,'gridfire::rates::weak::WeakReaction::constants::c']]],
   ['c_20library_2',['Building the C++ Library',['../index.html#autotoc_md23',1,'']]],
   ['c12a_5frate_3',['c12a_rate',['../namespacegridfire_1_1approx8.html#af7d9b901dbb3c88c151d927912d5121f',1,'gridfire::approx8']]],
   ['c12c12_5frate_4',['c12c12_rate',['../namespacegridfire_1_1approx8.html#a70eb18e9706ac28a308dcb4fcec7421f',1,'gridfire::approx8']]],
   ['c12o16_5frate_5',['c12o16_rate',['../namespacegridfire_1_1approx8.html#a8c30b7e6099c5fc2aa94f9c68fd075dc',1,'gridfire::approx8']]],
   ['c12p_5frate_6',['c12p_rate',['../namespacegridfire_1_1approx8.html#a890ad24c2cdb15fb76a3ff8a7b8d77db',1,'gridfire::approx8']]],
-  ['cached_5fresult_7',['cached_result',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adc814e5288f42c8eaf21c628858881a0',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['cached_5ftime_8',['cached_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#afaebf35ef65567a7c824d5c14d479bb3',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['cachestats_9',['CacheStats',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['calculate_5fforward_5frate_5flog_5fderivative_10',['calculate_forward_rate_log_derivative',['../classgridfire_1_1reaction_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061',1,'gridfire::reaction::Reaction::calculate_forward_rate_log_derivative()'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#aa4b8d0d30459f360ff6e29d848e943d5',1,'gridfire::reaction::LogicalReaction::calculate_forward_rate_log_derivative()'],['../classgridfire_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061',1,'gridfire::Reaction::calculate_forward_rate_log_derivative()']]],
-  ['calculate_5frate_11',['calculate_rate',['../classgridfire_1_1reaction_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec',1,'gridfire::reaction::Reaction::calculate_rate(const double T9) const'],['../classgridfire_1_1reaction_1_1_reaction.html#a735192a42f72cd68f289493753e1a616',1,'gridfire::reaction::Reaction::calculate_rate(const CppAD::AD&lt; double &gt; T9) const'],['../classgridfire_1_1reaction_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af',1,'gridfire::reaction::Reaction::calculate_rate(const T T9) const'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a1d2fb3b6a6a1860ace98b32447d1dd1b',1,'gridfire::reaction::LogicalReaction::calculate_rate(const double T9) const override'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#adad6f4297c1d8ce487eab092b73cdd32',1,'gridfire::reaction::LogicalReaction::calculate_rate(const CppAD::AD&lt; double &gt; T9) const override'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a019b721d83741acdb16036f00739f87c',1,'gridfire::reaction::LogicalReaction::calculate_rate(const T T9) const'],['../classgridfire_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec',1,'gridfire::Reaction::calculate_rate(const double T9) const'],['../classgridfire_1_1_reaction.html#a735192a42f72cd68f289493753e1a616',1,'gridfire::Reaction::calculate_rate(const CppAD::AD&lt; double &gt; T9) const'],['../classgridfire_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af',1,'gridfire::Reaction::calculate_rate(const T T9) const']]],
-  ['calculateallderivatives_12',['calculateAllDerivatives',['../classgridfire_1_1_graph_engine.html#af41df9ce979b6410e12642cb093916c9',1,'gridfire::GraphEngine::calculateAllDerivatives(const std::vector&lt; T &gt; &amp;Y_in, T T9, T rho) const'],['../classgridfire_1_1_graph_engine.html#aaf4d54e4b774ab8ec8eabec006579d31',1,'gridfire::GraphEngine::calculateAllDerivatives(const std::vector&lt; double &gt; &amp;Y_in, const double T9, const double rho) const'],['../classgridfire_1_1_graph_engine.html#a71a3d1181b90c3becdc5d9a3da05b9c9',1,'gridfire::GraphEngine::calculateAllDerivatives(const std::vector&lt; ADDouble &gt; &amp;Y_in, const ADDouble &amp;T9, const ADDouble &amp;rho) const']]],
-  ['calculateallderivativesusingprecomputation_13',['calculateAllDerivativesUsingPrecomputation',['../classgridfire_1_1_graph_engine.html#a97f98706b51fbe0d167ed81ffe58c438',1,'gridfire::GraphEngine']]],
-  ['calculateallreactionflows_14',['calculateAllReactionFlows',['../classgridfire_1_1_adaptive_engine_view.html#abdbaf4b87629efe43ac1255dad424c0c',1,'gridfire::AdaptiveEngineView']]],
-  ['calculatecreationrate_15',['calculateCreationRate',['../namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d',1,'gridfire']]],
-  ['calculatedestructionrateconstant_16',['calculateDestructionRateConstant',['../namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2',1,'gridfire']]],
-  ['calculatefactors_5fimpl_17',['calculateFactors_impl',['../classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a',1,'gridfire::screening::BareScreeningModel::calculateFactors_impl()'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#a2695206d46b9d2c2503f8e58c44df88f',1,'gridfire::screening::WeakScreeningModel::calculateFactors_impl()']]],
-  ['calculatemolarreactionflow_18',['CalculateMolarReactionFlow',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['calculatemolarreactionflow_19',['calculateMolarReactionFlow',['../classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785',1,'gridfire::DynamicEngine::calculateMolarReactionFlow()'],['../classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f',1,'gridfire::GraphEngine::calculateMolarReactionFlow(const reaction::Reaction &amp;reaction, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override'],['../classgridfire_1_1_graph_engine.html#a5e96b5a0b34c8932f0e14eabda57f1a4',1,'gridfire::GraphEngine::calculateMolarReactionFlow(const reaction::Reaction &amp;reaction, const std::vector&lt; T &gt; &amp;Y, const T T9, const T rho) const'],['../classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31',1,'gridfire::AdaptiveEngineView::calculateMolarReactionFlow()'],['../classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032',1,'gridfire::DefinedEngineView::calculateMolarReactionFlow()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044',1,'gridfire::MultiscalePartitioningEngineView::calculateMolarReactionFlow()'],['../class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a',1,'PyDynamicEngine::calculateMolarReactionFlow()']]],
-  ['calculatereversemolarreactionflow_20',['calculateReverseMolarReactionFlow',['../classgridfire_1_1_graph_engine.html#a17774cd9ffcf1ba94019df766a0984a0',1,'gridfire::GraphEngine']]],
-  ['calculatereverserate_21',['calculateReverseRate',['../classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28',1,'gridfire::GraphEngine']]],
-  ['calculatereverseratetwobody_22',['calculateReverseRateTwoBody',['../classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755',1,'gridfire::GraphEngine']]],
-  ['calculatereverseratetwobodyderivative_23',['calculateReverseRateTwoBodyDerivative',['../classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7',1,'gridfire::GraphEngine']]],
-  ['calculaterhsandenergy_24',['CalculateRHSAndEnergy',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505aafefea58639f78d7c750970bbad28420',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['calculaterhsandenergy_25',['calculateRHSAndEnergy',['../classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb',1,'gridfire::Engine::calculateRHSAndEnergy()'],['../classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081',1,'gridfire::GraphEngine::calculateRHSAndEnergy()'],['../classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5',1,'gridfire::AdaptiveEngineView::calculateRHSAndEnergy()'],['../classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d',1,'gridfire::DefinedEngineView::calculateRHSAndEnergy()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb',1,'gridfire::MultiscalePartitioningEngineView::calculateRHSAndEnergy()'],['../class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d',1,'PyEngine::calculateRHSAndEnergy()'],['../class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a',1,'PyDynamicEngine::calculateRHSAndEnergy()']]],
-  ['calculatescreeningfactors_26',['calculateScreeningFactors',['../classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde',1,'gridfire::screening::ScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const =0'],['../classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22',1,'gridfire::screening::ScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; ADDouble &gt; &amp;Y, const ADDouble T9, const ADDouble rho) const =0'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60',1,'gridfire::screening::BareScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99',1,'gridfire::screening::BareScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; ADDouble &gt; &amp;Y, const ADDouble T9, const ADDouble rho) const override'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c',1,'gridfire::screening::WeakScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#ac6bc78769670a460af1ff88284cb8ad4',1,'gridfire::screening::WeakScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const CppAD::AD&lt; double &gt; T9, const CppAD::AD&lt; double &gt; rho) const override'],['../class_py_screening.html#a2b8756c197eb89e77cb6dd231c979315',1,'PyScreening::calculateScreeningFactors(const gridfire::reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override'],['../class_py_screening.html#a5539d59311c778cf7f0006acc8f84ade',1,'PyScreening::calculateScreeningFactors(const gridfire::reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; ADDouble &gt; &amp;Y, const ADDouble T9, const ADDouble rho) const override']]],
-  ['callback_20context_27',['Callback Context',['../index.html#autotoc_md53',1,'']]],
-  ['callback_20example_28',['Callback Example',['../index.html#autotoc_md52',1,'']]],
-  ['callbacks_29',['Python callbacks',['../index.html#autotoc_md56',1,'']]],
-  ['chapter_30',['chapter',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc',1,'gridfire::reaclib::ReactionRecord::chapter'],['../classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629',1,'gridfire::reaction::Reaction::chapter()'],['../classgridfire_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629',1,'gridfire::Reaction::chapter()']]],
-  ['clang_20vs_20gcc_31',['Clang vs. GCC',['../index.html#autotoc_md24',1,'']]],
-  ['clear_32',['clear',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a05f71d318564d880079fd6c96d59ae21',1,'gridfire::reaction::TemplatedReactionSet']]],
-  ['cli_20config_20loading_20setup_20and_20build_33',['CLI config loading, setup, and build',['../index.html#autotoc_md21',1,'']]],
-  ['clone_34',['clone',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a',1,'gridfire::partition::CompositePartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d',1,'gridfire::partition::PartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4',1,'gridfire::partition::GroundStatePartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6',1,'gridfire::partition::RauscherThielemannPartitionFunction::clone()'],['../class_py_partition_function.html#af918b357e38fb82499ad53584557c43d',1,'PyPartitionFunction::clone()']]],
-  ['code_20architecture_20and_20logical_20flow_35',['Code Architecture and Logical Flow',['../index.html#autotoc_md27',1,'']]],
-  ['coeffs_36',['coeffs',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0',1,'gridfire::reaclib::ReactionRecord']]],
-  ['collect_37',['collect',['../classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e',1,'gridfire::DefinedEngineView']]],
-  ['collectatomicreverserateatomicbases_38',['collectAtomicReverseRateAtomicBases',['../classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746',1,'gridfire::GraphEngine']]],
-  ['collectnetworkspecies_39',['collectNetworkSpecies',['../classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa',1,'gridfire::GraphEngine']]],
-  ['common_20platforms_40',['Dependency Installation on Common Platforms',['../index.html#autotoc_md22',1,'']]],
-  ['common_20workflow_20example_41',['Common Workflow Example',['../index.html#autotoc_md50',1,'Common Workflow Example'],['../index.html#autotoc_md55',1,'Common Workflow Example']]],
-  ['compiler_20versions_42',['Minimum compiler versions',['../index.html#autotoc_md26',1,'']]],
-  ['components_20and_20effects_43',['Workflow Components and Effects',['../index.html#autotoc_md51',1,'']]],
-  ['composability_44',['A Note about composability',['../index.html#autotoc_md35',1,'']]],
-  ['compositepartitionfunction_45',['CompositePartitionFunction',['../classgridfire_1_1partition_1_1_composite_partition_function.html',1,'gridfire::partition::CompositePartitionFunction'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#ad80743933712de627c6a69d06d42ceb5',1,'gridfire::partition::CompositePartitionFunction::CompositePartitionFunction(const std::vector&lt; BasePartitionType &gt; &amp;partitionFunctions)'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#ac1bc5bedabef400fab6aceb477dbc6b9',1,'gridfire::partition::CompositePartitionFunction::CompositePartitionFunction(const CompositePartitionFunction &amp;other)']]],
-  ['composition_46',['Engine Composition',['../engine_8h.html#EngineComposition',1,'']]],
-  ['composition_47',['composition',['../structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1',1,'gridfire::NetIn::composition'],['../structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a',1,'gridfire::NetOut::composition']]],
-  ['composition_20initialization_48',['Composition Initialization',['../index.html#autotoc_md49',1,'']]],
-  ['compute_5fand_5fcache_49',['compute_and_cache',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
-  ['con_5fstype_5fregister_5fgraph_5fengine_5fbindings_50',['con_stype_register_graph_engine_bindings',['../engine_2bindings_8cpp.html#a61b016667b7477d898be2a2a5bc7cab8',1,'con_stype_register_graph_engine_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a61b016667b7477d898be2a2a5bc7cab8',1,'con_stype_register_graph_engine_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['config_51',['Config',['../classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3',1,'gridfire::AdaptiveEngineView::Config'],['../classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187',1,'gridfire::FileDefinedEngineView::Config'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036',1,'gridfire::io::SimpleReactionListFileParser::Config'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b',1,'gridfire::io::MESANetworkFileParser::Config']]],
-  ['config_20and_20saving_52',['TUI config and saving',['../index.html#autotoc_md19',1,'']]],
-  ['config_20loading_20and_20meson_20setup_53',['TUI config loading and meson setup',['../index.html#autotoc_md20',1,'']]],
-  ['config_20loading_20setup_20and_20build_54',['CLI config loading, setup, and build',['../index.html#autotoc_md21',1,'']]],
-  ['configuration_20options_55',['GraphEngine Configuration Options',['../index.html#autotoc_md30',1,'']]],
-  ['constants_56',['constants',['../structgridfire_1_1_graph_engine_1_1constants.html',1,'gridfire::GraphEngine']]],
-  ['constructcandidategroups_57',['constructCandidateGroups',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ac206840057bac65b7f7738e6dfd1047a',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['construction_2ecpp_58',['construction.cpp',['../construction_8cpp.html',1,'']]],
-  ['construction_2eh_59',['construction.h',['../construction_8h.html',1,'']]],
-  ['constructprimingreactionset_60',['constructPrimingReactionSet',['../classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f',1,'gridfire::NetworkPrimingEngineView']]],
-  ['constructreactionindexmap_61',['constructReactionIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c',1,'gridfire::AdaptiveEngineView::constructReactionIndexMap()'],['../classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68',1,'gridfire::DefinedEngineView::constructReactionIndexMap()']]],
-  ['constructspeciesindexmap_62',['constructSpeciesIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d',1,'gridfire::AdaptiveEngineView::constructSpeciesIndexMap()'],['../classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985',1,'gridfire::DefinedEngineView::constructSpeciesIndexMap()']]],
-  ['contains_63',['contains',['../classgridfire_1_1reaction_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b',1,'gridfire::reaction::Reaction::contains()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a7777ecd0f594fdf66ce57d22610fad3c',1,'gridfire::reaction::TemplatedReactionSet::contains(const std::string_view &amp;id) const'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ab8cb5fbce6b819b9e4e44b0c2db54c6f',1,'gridfire::reaction::TemplatedReactionSet::contains(const Reaction &amp;reaction) const'],['../classgridfire_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b',1,'gridfire::Reaction::contains()']]],
-  ['contains_5fproduct_64',['contains_product',['../classgridfire_1_1reaction_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2',1,'gridfire::reaction::Reaction::contains_product()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a443ec5d7138764b32975232e13071ccf',1,'gridfire::reaction::TemplatedReactionSet::contains_product()'],['../classgridfire_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2',1,'gridfire::Reaction::contains_product()']]],
-  ['contains_5freactant_65',['contains_reactant',['../classgridfire_1_1reaction_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45',1,'gridfire::reaction::Reaction::contains_reactant()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac42606350d7557106f7954b1f114c128',1,'gridfire::reaction::TemplatedReactionSet::contains_reactant()'],['../classgridfire_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45',1,'gridfire::Reaction::contains_reactant()']]],
-  ['contains_5fspecies_66',['contains_species',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad870856d206d93f27125c88d44ff9e34',1,'gridfire::reaction::TemplatedReactionSet']]],
-  ['context_67',['Callback Context',['../index.html#autotoc_md53',1,'']]],
-  ['convert_5fnetin_68',['convert_netIn',['../classgridfire_1_1approx8_1_1_approx8_network.html#a56426da6f1af7eb8a6d1cc70bc8e742a',1,'gridfire::approx8::Approx8Network']]],
-  ['culling_69',['culling',['../structgridfire_1_1_net_in.html#a6a5e909b46094ffa20da9a3da906e43f',1,'gridfire::NetIn']]],
-  ['cullreactionsbyflow_70',['cullReactionsByFlow',['../classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08',1,'gridfire::AdaptiveEngineView']]],
-  ['currently_20known_20good_20platforms_71',['Currently, known good platforms',['../index.html#autotoc_md10',1,'']]]
+  ['cachestats_7',['CacheStats',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['calculate_5fenergy_5fgeneration_5frate_8',['calculate_energy_generation_rate',['../classgridfire_1_1reaction_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd',1,'gridfire::reaction::Reaction::calculate_energy_generation_rate(const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const'],['../classgridfire_1_1reaction_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80',1,'gridfire::reaction::Reaction::calculate_energy_generation_rate(const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a091d6d4aa59f788c97f9b5481f46f1b5',1,'gridfire::rates::weak::WeakReaction::calculate_energy_generation_rate(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#af515e3587a1050c4bc59657696be5f9b',1,'gridfire::rates::weak::WeakReaction::calculate_energy_generation_rate(const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override'],['../classgridfire_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd',1,'gridfire::Reaction::calculate_energy_generation_rate(const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const'],['../classgridfire_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80',1,'gridfire::Reaction::calculate_energy_generation_rate(const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const']]],
+  ['calculate_5flog_5frate_5fpartial_5fderiv_5fwrt_5ft9_9',['calculate_log_rate_partial_deriv_wrt_T9',['../classgridfire_1_1reaction_1_1_reaction.html#aa2b615e764bb005e526ca9327319c735',1,'gridfire::reaction::Reaction::calculate_log_rate_partial_deriv_wrt_T9()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656',1,'gridfire::reaction::ReaclibReaction::calculate_log_rate_partial_deriv_wrt_T9()'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a9b1363314159eaf9c56aaa233f5eebd6',1,'gridfire::reaction::LogicalReaclibReaction::calculate_log_rate_partial_deriv_wrt_T9()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac2d5366d4b5766413db34558dbce3cb3',1,'gridfire::rates::weak::WeakReaction::calculate_log_rate_partial_deriv_wrt_T9()'],['../classgridfire_1_1_reaction.html#aec9859c030364e1d4a740197514731db',1,'gridfire::Reaction::calculate_log_rate_partial_deriv_wrt_T9()']]],
+  ['calculate_5frate_10',['calculate_rate',['../classgridfire_1_1reaction_1_1_reaction.html#a83c121480533593adfd68c4a67a649f1',1,'gridfire::reaction::Reaction::calculate_rate(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const =0'],['../classgridfire_1_1reaction_1_1_reaction.html#af8303d67df61fc9e31ce054f0e8a3e14',1,'gridfire::reaction::Reaction::calculate_rate(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const =0'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#acd16b1daf13456b3523362a37b1bf9b0',1,'gridfire::reaction::ReaclibReaction::calculate_rate(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#afec5ccf7a8fb1ba56c8cc852ce858c5e',1,'gridfire::reaction::ReaclibReaction::calculate_rate(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#aeb177f9cf69e4f97c4518a27e6480523',1,'gridfire::reaction::ReaclibReaction::calculate_rate(const T T9) const'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ac21a726884930e6a00792e7c3eb43f42',1,'gridfire::reaction::LogicalReaclibReaction::calculate_rate(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ab5bdbe13239f1180f32fb0a14a60d0a9',1,'gridfire::reaction::LogicalReaclibReaction::calculate_rate(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a19462806927500f72b7d3f578b3040de',1,'gridfire::reaction::LogicalReaclibReaction::calculate_rate(const T T9) const'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a05df0657efed55eb4262c7834d81400a',1,'gridfire::rates::weak::WeakReaction::calculate_rate(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90ca346e2321516656b83d863416671e',1,'gridfire::rates::weak::WeakReaction::calculate_rate(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aa28f151d4ce14e0d6fcbecb07d03cd28',1,'gridfire::rates::weak::WeakReaction::calculate_rate(T T9, T rho, T Ye, T mue, const std::vector&lt; T &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const'],['../classgridfire_1_1_reaction.html#abb3e2b9c5404f45fc5656eeac1d06a6c',1,'gridfire::Reaction::calculate_rate(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const=0'],['../classgridfire_1_1_reaction.html#a8cbc768819bea8497a7b9fa644b8fd65',1,'gridfire::Reaction::calculate_rate(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const=0']]],
+  ['calculate_5frhs_11',['calculate_rhs',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a38e0f02ba54e217e9638260d9651b1c3',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['calculateallderivatives_12',['calculateAllDerivatives',['../classgridfire_1_1_graph_engine.html#a8873331f5ae40a3f640dedbbed685ed9',1,'gridfire::GraphEngine']]],
+  ['calculateallderivativesusingprecomputation_13',['calculateAllDerivativesUsingPrecomputation',['../classgridfire_1_1_graph_engine.html#aef12443d7980301d8bb89f4ba4890450',1,'gridfire::GraphEngine']]],
+  ['calculateallreactionflows_14',['calculateAllReactionFlows',['../classgridfire_1_1_adaptive_engine_view.html#ab5397d217039f096acededd4d2779780',1,'gridfire::AdaptiveEngineView']]],
+  ['calculatecreationrate_15',['calculateCreationRate',['../namespacegridfire.html#a8995b949592d59850e45a3fd27306369',1,'gridfire::calculateCreationRate(const DynamicEngine &amp;engine, const fourdst::atomic::Species &amp;species, const fourdst::composition::Composition &amp;composition, double T9, double rho)'],['../namespacegridfire.html#a553717597efebcea94232a4a1d80e31d',1,'gridfire::calculateCreationRate(const DynamicEngine &amp;engine, const Species &amp;species, const Composition &amp;comp, const double T9, const double rho)']]],
+  ['calculatedestructionrateconstant_16',['calculateDestructionRateConstant',['../namespacegridfire.html#ab6e14208fad69f4031411a9346c12397',1,'gridfire::calculateDestructionRateConstant(const DynamicEngine &amp;engine, const fourdst::atomic::Species &amp;species, const fourdst::composition::Composition &amp;composition, double T9, double rho)'],['../namespacegridfire.html#a023dc09e48b62e3f93f9a8b70cb2c63f',1,'gridfire::calculateDestructionRateConstant(const DynamicEngine &amp;engine, const Species &amp;species, const Composition &amp;comp, const double T9, const double rho)']]],
+  ['calculateepsderivatives_17',['calculateEpsDerivatives',['../classgridfire_1_1_dynamic_engine.html#a264bd5a8891c8c5f0dff32867effe547',1,'gridfire::DynamicEngine::calculateEpsDerivatives()'],['../classgridfire_1_1_graph_engine.html#ae0c9159cc3467fd85d1a5895f1786c47',1,'gridfire::GraphEngine::calculateEpsDerivatives()'],['../classgridfire_1_1_adaptive_engine_view.html#a5d1b50afd2fba6af75e976a4f9c9dcbc',1,'gridfire::AdaptiveEngineView::calculateEpsDerivatives()'],['../classgridfire_1_1_defined_engine_view.html#a06aca977aafb4784fd167acb8c02dda2',1,'gridfire::DefinedEngineView::calculateEpsDerivatives()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a99f9116d5a18afcbf0e808ef111d1be8',1,'gridfire::MultiscalePartitioningEngineView::calculateEpsDerivatives()']]],
+  ['calculatefactors_5fimpl_18',['calculateFactors_impl',['../classgridfire_1_1screening_1_1_bare_screening_model.html#a48a3392d735c61b15b4855c823acfada',1,'gridfire::screening::BareScreeningModel::calculateFactors_impl()'],['../classgridfire_1_1screening_1_1_intermediate_screening_model.html#a794b7781f07343383da3894208cfbfa9',1,'gridfire::screening::IntermediateScreeningModel::calculateFactors_impl()'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#aa9f95ba8c052dacb72295775516b7e5f',1,'gridfire::screening::WeakScreeningModel::calculateFactors_impl()']]],
+  ['calculatemolarreactionflow_19',['CalculateMolarReactionFlow',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['calculatemolarreactionflow_20',['calculateMolarReactionFlow',['../classgridfire_1_1_dynamic_engine.html#a39cf5b738eea0a275bf8c0eb5789fab3',1,'gridfire::DynamicEngine::calculateMolarReactionFlow()'],['../classgridfire_1_1_graph_engine.html#a1675859971f0bd2db0650f8da54ed7eb',1,'gridfire::GraphEngine::calculateMolarReactionFlow(const reaction::Reaction &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const override'],['../classgridfire_1_1_graph_engine.html#a2bea809d2efb3a5e7cc065ec80baebce',1,'gridfire::GraphEngine::calculateMolarReactionFlow(const reaction::Reaction &amp;reaction, const std::vector&lt; T &gt; &amp;Y, const T T9, const T rho, T Ye, T mue) const'],['../classgridfire_1_1_adaptive_engine_view.html#a3c1e27b45051c4ba481a2b87513982ed',1,'gridfire::AdaptiveEngineView::calculateMolarReactionFlow()'],['../classgridfire_1_1_defined_engine_view.html#a74298377d0432ae3d577be0e9e6052b3',1,'gridfire::DefinedEngineView::calculateMolarReactionFlow()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a87687a960f263a4e1bc035e4d0a345db',1,'gridfire::MultiscalePartitioningEngineView::calculateMolarReactionFlow()'],['../class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a',1,'PyDynamicEngine::calculateMolarReactionFlow()']]],
+  ['calculatereversemolarreactionflow_21',['calculateReverseMolarReactionFlow',['../classgridfire_1_1_graph_engine.html#a972d0705351167dc889a2f6c442e7a93',1,'gridfire::GraphEngine']]],
+  ['calculatereverserate_22',['calculateReverseRate',['../classgridfire_1_1_graph_engine.html#accf01734524a706ad03c9b9898af54b3',1,'gridfire::GraphEngine']]],
+  ['calculatereverseratetwobody_23',['calculateReverseRateTwoBody',['../classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755',1,'gridfire::GraphEngine']]],
+  ['calculatereverseratetwobodyderivative_24',['calculateReverseRateTwoBodyDerivative',['../classgridfire_1_1_graph_engine.html#a9340db538a507b96e186b60ba0450205',1,'gridfire::GraphEngine']]],
+  ['calculaterhsandenergy_25',['CalculateRHSAndEnergy',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505aafefea58639f78d7c750970bbad28420',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['calculaterhsandenergy_26',['calculateRHSAndEnergy',['../classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740',1,'gridfire::Engine::calculateRHSAndEnergy()'],['../classgridfire_1_1_graph_engine.html#a7acc98647427981a9602d251c9288012',1,'gridfire::GraphEngine::calculateRHSAndEnergy()'],['../classgridfire_1_1_adaptive_engine_view.html#ac5545d546166de94514871d7ad7b8669',1,'gridfire::AdaptiveEngineView::calculateRHSAndEnergy()'],['../classgridfire_1_1_defined_engine_view.html#af273b29d7700cdc34da6e2712fffc5c2',1,'gridfire::DefinedEngineView::calculateRHSAndEnergy()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a5c1ab19bc3394a5d29241ef02073c4cb',1,'gridfire::MultiscalePartitioningEngineView::calculateRHSAndEnergy()'],['../class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d',1,'PyEngine::calculateRHSAndEnergy()'],['../class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a',1,'PyDynamicEngine::calculateRHSAndEnergy()']]],
+  ['calculatescreeningfactors_27',['calculateScreeningFactors',['../classgridfire_1_1screening_1_1_screening_model.html#ab08c4490f9da18254a7c6f29be1f62ce',1,'gridfire::screening::ScreeningModel::calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const =0'],['../classgridfire_1_1screening_1_1_screening_model.html#a1da8242c7591ab32453d1e0109999d6c',1,'gridfire::screening::ScreeningModel::calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, ADDouble T9, ADDouble rho) const =0'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#ad252ce1de82401bab24747aabf0c8a3a',1,'gridfire::screening::BareScreeningModel::calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#a0ac3685a90c1e65a84e03cfb2fed29e5',1,'gridfire::screening::BareScreeningModel::calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, ADDouble T9, ADDouble rho) const override'],['../classgridfire_1_1screening_1_1_intermediate_screening_model.html#a86a218ce82306ed582296cbeb3de0250',1,'gridfire::screening::IntermediateScreeningModel::calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override'],['../classgridfire_1_1screening_1_1_intermediate_screening_model.html#a765e369256282f0f25e66e13c33dcbd9',1,'gridfire::screening::IntermediateScreeningModel::calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; ADDouble &gt; &amp;Y, ADDouble T9, ADDouble rho) const override'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#a6a215d082b0d05126fb2b19fd1983446',1,'gridfire::screening::WeakScreeningModel::calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#a8b0590814e7058b4ff3f0cd6f4124773',1,'gridfire::screening::WeakScreeningModel::calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho) const override'],['../class_py_screening.html#aa67b5f0528006d9c742033b8c5ab3a05',1,'PyScreening::calculateScreeningFactors(const gridfire::reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override'],['../class_py_screening.html#a68a126de903e1a87a1d7d1cfec8add0f',1,'PyScreening::calculateScreeningFactors(const gridfire::reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; ADDouble &gt; &amp;Y, ADDouble T9, ADDouble rho) const override']]],
+  ['callback_20context_28',['Callback Context',['../index.html#autotoc_md53',1,'']]],
+  ['callback_20example_29',['Callback Example',['../index.html#autotoc_md52',1,'']]],
+  ['callbacks_30',['Python callbacks',['../index.html#autotoc_md56',1,'']]],
+  ['captured_5fexception_31',['captured_exception',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a3e089139de2ba47e96dfe22c14d24e9e',1,'gridfire::solver::CVODESolverStrategy::CVODEUserData']]],
+  ['causes_32',['causes',['../structgridfire_1_1trigger_1_1_trigger_result.html#a7cf4d21d3cd3e53b62736932b44072cd',1,'gridfire::trigger::TriggerResult']]],
+  ['chapter_33',['chapter',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc',1,'gridfire::reaclib::ReactionRecord::chapter'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#abe189c43e4d509d9d05dd205861ceddc',1,'gridfire::reaction::ReaclibReaction::chapter()']]],
+  ['check_34',['check',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a50df7fefee167390522aa258fa6ee960',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::check()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3855b15459217383647ecdf12bc35775',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::check()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a04598611b0807cad395bdd2fbc41a6c2',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::check()'],['../classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88',1,'gridfire::trigger::Trigger::check()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#aaefdfa86856f9f7839b6a7fdffa4a579',1,'gridfire::trigger::AndTrigger::check()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#ac8be54d91e77ed16ae3cca2417d82e0a',1,'gridfire::trigger::OrTrigger::check()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#ae453a72df20fdd416443ef7867f86b92',1,'gridfire::trigger::NotTrigger::check()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69fbb099f8d13d39602f58fa8aa8e7f2',1,'gridfire::trigger::EveryNthTrigger::check()']]],
+  ['clang_20vs_20gcc_35',['Clang vs. GCC',['../index.html#autotoc_md24',1,'']]],
+  ['cleanup_5fcvode_5fresources_36',['cleanup_cvode_resources',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a7f6786780137de1a136e081c537a9667',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['clear_37',['clear',['../classgridfire_1_1reaction_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300',1,'gridfire::reaction::ReactionSet::clear()'],['../classgridfire_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300',1,'gridfire::ReactionSet::clear()']]],
+  ['cli_20config_20loading_20setup_20and_20build_38',['CLI config loading, setup, and build',['../index.html#autotoc_md21',1,'']]],
+  ['clone_39',['clone',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a',1,'gridfire::partition::CompositePartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d',1,'gridfire::partition::PartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4',1,'gridfire::partition::GroundStatePartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6',1,'gridfire::partition::RauscherThielemannPartitionFunction::clone()'],['../classgridfire_1_1reaction_1_1_reaction.html#ab95ce7fb022a9432bdc77f14679221ee',1,'gridfire::reaction::Reaction::clone()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a54fde02e7010e806136f976ab64b1740',1,'gridfire::reaction::ReaclibReaction::clone()'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad113b9cb64c449f9449c4cce4fa64076',1,'gridfire::reaction::LogicalReaclibReaction::clone()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac10e1451d20876f6eab199e127f213c7',1,'gridfire::rates::weak::WeakReaction::clone()'],['../class_py_partition_function.html#af918b357e38fb82499ad53584557c43d',1,'PyPartitionFunction::clone()'],['../classgridfire_1_1_reaction.html#a588a8c19970463d97f5aa333fcd312dc',1,'gridfire::Reaction::clone()']]],
+  ['code_20architecture_20and_20logical_20flow_40',['Code Architecture and Logical Flow',['../index.html#autotoc_md27',1,'']]],
+  ['coeffs_41',['coeffs',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0',1,'gridfire::reaclib::ReactionRecord']]],
+  ['collect_42',['collect',['../classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e',1,'gridfire::DefinedEngineView']]],
+  ['collectatomicreverserateatomicbases_43',['collectAtomicReverseRateAtomicBases',['../classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746',1,'gridfire::GraphEngine']]],
+  ['collectnetworkspecies_44',['collectNetworkSpecies',['../classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa',1,'gridfire::GraphEngine']]],
+  ['column_45',['Column',['../classgridfire_1_1utils_1_1_column.html',1,'gridfire::utils::Column&lt; T &gt;'],['../classgridfire_1_1utils_1_1_column.html#a7d7e4f4cf6f8e03725afeb9f664321b8',1,'gridfire::utils::Column::Column()']]],
+  ['columnbase_46',['ColumnBase',['../classgridfire_1_1utils_1_1_column_base.html',1,'gridfire::utils']]],
+  ['common_20platforms_47',['Dependency Installation on Common Platforms',['../index.html#autotoc_md22',1,'']]],
+  ['common_20workflow_20example_48',['Common Workflow Example',['../index.html#autotoc_md50',1,'Common Workflow Example'],['../index.html#autotoc_md55',1,'Common Workflow Example']]],
+  ['compiler_20versions_49',['Minimum compiler versions',['../index.html#autotoc_md26',1,'']]],
+  ['components_20and_20effects_50',['Workflow Components and Effects',['../index.html#autotoc_md51',1,'']]],
+  ['composability_51',['A Note about composability',['../index.html#autotoc_md35',1,'']]],
+  ['compositepartitionfunction_52',['CompositePartitionFunction',['../classgridfire_1_1partition_1_1_composite_partition_function.html',1,'gridfire::partition::CompositePartitionFunction'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#ad80743933712de627c6a69d06d42ceb5',1,'gridfire::partition::CompositePartitionFunction::CompositePartitionFunction(const std::vector&lt; BasePartitionType &gt; &amp;partitionFunctions)'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#ac1bc5bedabef400fab6aceb477dbc6b9',1,'gridfire::partition::CompositePartitionFunction::CompositePartitionFunction(const CompositePartitionFunction &amp;other)']]],
+  ['composition_53',['Engine Composition',['../engine_8h.html#EngineComposition',1,'']]],
+  ['composition_54',['composition',['../structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1',1,'gridfire::NetIn::composition'],['../structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a',1,'gridfire::NetOut::composition']]],
+  ['composition_20initialization_55',['Composition Initialization',['../index.html#autotoc_md49',1,'']]],
+  ['con_5fstype_5fregister_5fgraph_5fengine_5fbindings_56',['con_stype_register_graph_engine_bindings',['../engine_2bindings_8cpp.html#a73d427751e6a64952d52e7c2cc84d065',1,'con_stype_register_graph_engine_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a73d427751e6a64952d52e7c2cc84d065',1,'con_stype_register_graph_engine_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['config_57',['Config',['../classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3',1,'gridfire::AdaptiveEngineView::Config'],['../classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187',1,'gridfire::FileDefinedEngineView::Config'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036',1,'gridfire::io::SimpleReactionListFileParser::Config'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b',1,'gridfire::io::MESANetworkFileParser::Config']]],
+  ['config_20and_20saving_58',['TUI config and saving',['../index.html#autotoc_md19',1,'']]],
+  ['config_20loading_20and_20meson_20setup_59',['TUI config loading and meson setup',['../index.html#autotoc_md20',1,'']]],
+  ['config_20loading_20setup_20and_20build_60',['CLI config loading, setup, and build',['../index.html#autotoc_md21',1,'']]],
+  ['configuration_20options_61',['GraphEngine Configuration Options',['../index.html#autotoc_md30',1,'']]],
+  ['constants_62',['constants',['../structgridfire_1_1_graph_engine_1_1constants.html',1,'gridfire::GraphEngine::constants'],['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['constructcandidategroups_63',['constructCandidateGroups',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aaabaae8e33ca8a05a2aa1f374e792795',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['construction_2ecpp_64',['construction.cpp',['../construction_8cpp.html',1,'']]],
+  ['construction_2eh_65',['construction.h',['../construction_8h.html',1,'']]],
+  ['constructprimingreactionset_66',['constructPrimingReactionSet',['../classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f',1,'gridfire::NetworkPrimingEngineView']]],
+  ['constructreactionindexmap_67',['constructReactionIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c',1,'gridfire::AdaptiveEngineView::constructReactionIndexMap()'],['../classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68',1,'gridfire::DefinedEngineView::constructReactionIndexMap()']]],
+  ['constructspeciesindexmap_68',['constructSpeciesIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d',1,'gridfire::AdaptiveEngineView::constructSpeciesIndexMap()'],['../classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985',1,'gridfire::DefinedEngineView::constructSpeciesIndexMap()']]],
+  ['contains_69',['contains',['../classgridfire_1_1reaction_1_1_reaction.html#a768db057d358240d4825c21869af0792',1,'gridfire::reaction::Reaction::contains()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a171b690e1abaf23f11a94c39e9f8c944',1,'gridfire::reaction::ReaclibReaction::contains()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387',1,'gridfire::reaction::ReactionSet::contains(const std::string_view &amp;id) const'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a2f6b165c86634a68f35032c2267255f8',1,'gridfire::reaction::ReactionSet::contains(const Reaction &amp;reaction) const'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a745b161968f37873b5d40fe6bf9d2118',1,'gridfire::rates::weak::WeakReaction::contains()'],['../classgridfire_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387',1,'gridfire::ReactionSet::contains(const std::string_view &amp;id) const'],['../classgridfire_1_1_reaction_set.html#a2f6b165c86634a68f35032c2267255f8',1,'gridfire::ReactionSet::contains(const Reaction &amp;reaction) const'],['../classgridfire_1_1_reaction.html#adaeb5d72faf7d55d4e26f6e1fcba21c1',1,'gridfire::Reaction::contains()']]],
+  ['contains_5fproduct_70',['contains_product',['../classgridfire_1_1reaction_1_1_reaction.html#a2708d2e8f42159df6605a5948b13c4c5',1,'gridfire::reaction::Reaction::contains_product()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a4e4811436d09afaa4a14c51d9af71f88',1,'gridfire::reaction::ReaclibReaction::contains_product()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e',1,'gridfire::reaction::ReactionSet::contains_product()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a957b5bfe70e536290ef677a7c5b6643f',1,'gridfire::rates::weak::WeakReaction::contains_product()'],['../classgridfire_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e',1,'gridfire::ReactionSet::contains_product()'],['../classgridfire_1_1_reaction.html#a5a17ca61d069749960e5a83e58c0b8a1',1,'gridfire::Reaction::contains_product()']]],
+  ['contains_5freactant_71',['contains_reactant',['../classgridfire_1_1reaction_1_1_reaction.html#ab28bf4f9417ecabcc8350bae449fedd5',1,'gridfire::reaction::Reaction::contains_reactant()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a65a12e5f6180873866cfaaf130fd1156',1,'gridfire::reaction::ReaclibReaction::contains_reactant()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2',1,'gridfire::reaction::ReactionSet::contains_reactant()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a98095e6536d9a6434c5955f4c169d505',1,'gridfire::rates::weak::WeakReaction::contains_reactant()'],['../classgridfire_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2',1,'gridfire::ReactionSet::contains_reactant()'],['../classgridfire_1_1_reaction.html#afca3afba45a3db79980c8fe18c87c750',1,'gridfire::Reaction::contains_reactant()']]],
+  ['contains_5fspecies_72',['contains_species',['../classgridfire_1_1reaction_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a',1,'gridfire::reaction::ReactionSet::contains_species()'],['../classgridfire_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a',1,'gridfire::ReactionSet::contains_species()']]],
+  ['context_73',['Callback Context',['../index.html#autotoc_md53',1,'']]],
+  ['convert_5fnetin_74',['convert_netIn',['../classgridfire_1_1approx8_1_1_approx8_network.html#a56426da6f1af7eb8a6d1cc70bc8e742a',1,'gridfire::approx8::Approx8Network']]],
+  ['culling_75',['culling',['../structgridfire_1_1_net_in.html#a6a5e909b46094ffa20da9a3da906e43f',1,'gridfire::NetIn']]],
+  ['cullreactionsbyflow_76',['cullReactionsByFlow',['../classgridfire_1_1_adaptive_engine_view.html#a95fbfb7f2bdbf80195f1ea0aff8d62fb',1,'gridfire::AdaptiveEngineView']]],
+  ['currently_20known_20good_20platforms_77',['Currently, known good platforms',['../index.html#autotoc_md10',1,'']]],
+  ['cvode_5fjac_5fwrapper_78',['cvode_jac_wrapper',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ae13fc9c21f595edbee1c9b7debaa61b3',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['cvode_5frhs_5fwrapper_79',['cvode_rhs_wrapper',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a14c620ef75749c8ef3dfdb84132e5620',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['cvode_5fsolver_5fstrategy_2ecpp_80',['CVODE_solver_strategy.cpp',['../_c_v_o_d_e__solver__strategy_8cpp.html',1,'']]],
+  ['cvode_5fsolver_5fstrategy_2eh_81',['CVODE_solver_strategy.h',['../_c_v_o_d_e__solver__strategy_8h.html',1,'']]],
+  ['cvodesolverstrategy_82',['CVODESolverStrategy',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html',1,'gridfire::solver::CVODESolverStrategy'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a924a541da3b205818f90b50d675631c0',1,'gridfire::solver::CVODESolverStrategy::CVODESolverStrategy(DynamicEngine &amp;engine)'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a2fa56a2e7a63d31d2afa895a5e4fe827',1,'gridfire::solver::CVODESolverStrategy::CVODESolverStrategy(const CVODESolverStrategy &amp;)=delete'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a1f007d68e808ba61f8425d0487432c0d',1,'gridfire::solver::CVODESolverStrategy::CVODESolverStrategy(CVODESolverStrategy &amp;&amp;)=delete']]],
+  ['cvodeuserdata_83',['CVODEUserData',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html',1,'gridfire::solver::CVODESolverStrategy']]]
 ];
diff --git a/docs/html/search/all_9.js b/docs/html/search/all_9.js
index fa1fe19c..f5497b58 100644
--- a/docs/html/search/all_9.js
+++ b/docs/html/search/all_9.js
@@ -1,23 +1,34 @@
 var searchData=
 [
-  ['data_0',['data',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]],
-  ['definedengineview_1',['DefinedEngineView',['../classgridfire_1_1_defined_engine_view.html',1,'gridfire::DefinedEngineView'],['../classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92',1,'gridfire::DefinedEngineView::DefinedEngineView()']]],
-  ['definedengineview_20example_2',['DefinedEngineView Example',['../engine_8h.html#DefinedEngineViewExample',1,'']]],
-  ['density_3',['density',['../structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577',1,'gridfire::NetIn::density'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc',1,'gridfire::exceptions::StaleEngineTrigger::density()']]],
-  ['dependency_20installation_20on_20common_20platforms_4',['Dependency Installation on Common Platforms',['../index.html#autotoc_md22',1,'']]],
-  ['describe_5',['describe',['../structgridfire_1_1solver_1_1_solver_context_base.html#a9cbef3cabc8524e542613ee50d8860c6',1,'gridfire::solver::SolverContextBase::describe()'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ab032139a719e551f888ae012ef8018ee',1,'gridfire::solver::DirectNetworkSolver::TimestepContext::describe()']]],
-  ['describe_5fcallback_5fcontext_6',['describe_callback_context',['../classgridfire_1_1solver_1_1_network_solver_strategy.html#ae09169769774f17df8701c42a64ed656',1,'gridfire::solver::NetworkSolverStrategy::describe_callback_context()'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a053c9c1343af8f30ced69707e1d899e3',1,'gridfire::solver::DirectNetworkSolver::describe_callback_context()'],['../class_py_dynamic_network_solver_strategy.html#a147a0a543268427a5930143902217ac3',1,'PyDynamicNetworkSolverStrategy::describe_callback_context()']]],
-  ['design_7',['Engine Design',['../engine_8h.html#EngineDesign',1,'']]],
-  ['design_20philosophy_20and_20workflow_8',['Design Philosophy and Workflow',['../index.html#autotoc_md1',1,'']]],
-  ['developers_9',['source for developers',['../index.html#autotoc_md7',1,'']]],
-  ['development_20from_20source_10',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md62',1,'']]],
-  ['df_11',['df',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
-  ['directnetworksolver_12',['DirectNetworkSolver',['../index.html#autotoc_md42',1,'Algorithmic Workflow in DirectNetworkSolver'],['../classgridfire_1_1solver_1_1_direct_network_solver.html',1,'gridfire::solver::DirectNetworkSolver']]],
-  ['directnetworksolver_20implicit_20rosenbrock_20method_13',['DirectNetworkSolver (Implicit Rosenbrock Method)',['../index.html#autotoc_md41',1,'']]],
-  ['dp_5frate_14',['dp_rate',['../namespacegridfire_1_1approx8.html#a51d139de74680c8437d20a3fa622200c',1,'gridfire::approx8']]],
-  ['dt_15',['dt',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a6a293628e61f241b9d335cd223da5f7c',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['dt0_16',['dt0',['../structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a',1,'gridfire::NetIn']]],
-  ['dydt_17',['dydt',['../structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d',1,'gridfire::StepDerivatives']]],
-  ['dynamicengine_18',['DynamicEngine',['../classgridfire_1_1_dynamic_engine.html',1,'gridfire']]],
-  ['dynamicnetworksolverstrategy_19',['DynamicNetworkSolverStrategy',['../namespacegridfire_1_1solver.html#a8118d08bc25e439754b43a3f5ecc1db3',1,'gridfire::solver']]]
+  ['d_5flog_5fantineutrino_5floss_5fbd_0',['d_log_antineutrino_loss_bd',['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a87894b5fdb0323c41f8e1e179ffefd1e',1,'gridfire::rates::weak::WeakRateDerivatives']]],
+  ['d_5flog_5fbeta_5fminus_1',['d_log_beta_minus',['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a54ba76b67d037954af1cbd6052becc61',1,'gridfire::rates::weak::WeakRateDerivatives']]],
+  ['d_5flog_5fbeta_5fplus_2',['d_log_beta_plus',['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#ab79353551bc5f832c986d24384d8a53a',1,'gridfire::rates::weak::WeakRateDerivatives']]],
+  ['d_5flog_5felectron_5fcapture_3',['d_log_electron_capture',['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a5e15e3d4d03288bd6f5dfc7054120514',1,'gridfire::rates::weak::WeakRateDerivatives']]],
+  ['d_5flog_5fneutrino_5floss_5fec_4',['d_log_neutrino_loss_ec',['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a415f5ff7ee18cc241eab5fbf6a0cdc17',1,'gridfire::rates::weak::WeakRateDerivatives']]],
+  ['d_5flog_5fpositron_5fcapture_5',['d_log_positron_capture',['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a3cf82898078fcc9aa69344b4d2cf8783',1,'gridfire::rates::weak::WeakRateDerivatives']]],
+  ['data_6',['data',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope::data'],['../structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#ad0df5ef84e3a78d881838a3bb014db83',1,'gridfire::rates::weak::IsotopeGrid::data']]],
+  ['definedengineview_7',['DefinedEngineView',['../classgridfire_1_1_defined_engine_view.html',1,'gridfire::DefinedEngineView'],['../classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92',1,'gridfire::DefinedEngineView::DefinedEngineView()']]],
+  ['definedengineview_20example_8',['DefinedEngineView Example',['../engine_8h.html#DefinedEngineViewExample',1,'']]],
+  ['density_9',['density',['../structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577',1,'gridfire::NetIn::density'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc',1,'gridfire::exceptions::StaleEngineTrigger::density()']]],
+  ['dependency_20installation_20on_20common_20platforms_10',['Dependency Installation on Common Platforms',['../index.html#autotoc_md22',1,'']]],
+  ['deps_5fdrho_11',['dEps_dRho',['../structgridfire_1_1_energy_derivatives.html#adc09db042b1fdee7468c807491245046',1,'gridfire::EnergyDerivatives::dEps_dRho'],['../structgridfire_1_1_net_out.html#ad0bde670fb87bcab4de413e8284d624e',1,'gridfire::NetOut::dEps_dRho']]],
+  ['deps_5fdt_12',['dEps_dT',['../structgridfire_1_1_energy_derivatives.html#a70ae455c021a950fda7bda3022456542',1,'gridfire::EnergyDerivatives::dEps_dT'],['../structgridfire_1_1_net_out.html#a210c0c395bc012c8ce6bef8cc6b683d6',1,'gridfire::NetOut::dEps_dT']]],
+  ['describe_13',['describe',['../structgridfire_1_1solver_1_1_solver_context_base.html#a9cbef3cabc8524e542613ee50d8860c6',1,'gridfire::solver::SolverContextBase::describe()'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#ae3c6320ce7a8f41c9ae36c42d62b4204',1,'gridfire::solver::CVODESolverStrategy::TimestepContext::describe()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a0f412b8f788ab7990e353d62ab7d9a16',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::describe()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#ad0dd92f9da6c291c3bd57c0983940035',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::describe()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a8ba5a942bb61347851030d1eb6bbaa74',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::describe()'],['../classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f',1,'gridfire::trigger::Trigger::describe()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#a2dcd635c6bdbcfe517adca6e2bd5c408',1,'gridfire::trigger::AndTrigger::describe()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#accb56630df2f57400467d315c61dede6',1,'gridfire::trigger::OrTrigger::describe()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#ad8166350329db3e1f50954afbb311a35',1,'gridfire::trigger::NotTrigger::describe()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#aab88715f3c94437ca7f3fcb1698c69de',1,'gridfire::trigger::EveryNthTrigger::describe()']]],
+  ['describe_5fcallback_5fcontext_14',['describe_callback_context',['../classgridfire_1_1solver_1_1_network_solver_strategy.html#ae09169769774f17df8701c42a64ed656',1,'gridfire::solver::NetworkSolverStrategy::describe_callback_context()'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5dfb7a2ce0008d41dee4aa596a4e1ce4',1,'gridfire::solver::CVODESolverStrategy::describe_callback_context()'],['../class_py_dynamic_network_solver_strategy.html#a147a0a543268427a5930143902217ac3',1,'PyDynamicNetworkSolverStrategy::describe_callback_context()']]],
+  ['description_15',['description',['../structgridfire_1_1trigger_1_1_trigger_result.html#aaf99ffdeb73f5e792e61c4cca68aa157',1,'gridfire::trigger::TriggerResult']]],
+  ['design_16',['Engine Design',['../engine_8h.html#EngineDesign',1,'']]],
+  ['design_20philosophy_20and_20workflow_17',['Design Philosophy and Workflow',['../index.html#autotoc_md1',1,'']]],
+  ['developers_18',['source for developers',['../index.html#autotoc_md7',1,'']]],
+  ['development_20from_20source_19',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md62',1,'']]],
+  ['df_20',['df',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['directnetworksolver_21',['Algorithmic Workflow in DirectNetworkSolver',['../index.html#autotoc_md42',1,'']]],
+  ['directnetworksolver_20implicit_20rosenbrock_20method_22',['DirectNetworkSolver (Implicit Rosenbrock Method)',['../index.html#autotoc_md41',1,'']]],
+  ['dp_5frate_23',['dp_rate',['../namespacegridfire_1_1approx8.html#a51d139de74680c8437d20a3fa622200c',1,'gridfire::approx8']]],
+  ['dt_24',['dt',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a6442d15673e6385bb6fdd11e1179c487',1,'gridfire::solver::CVODESolverStrategy::TimestepContext']]],
+  ['dt0_25',['dt0',['../structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a',1,'gridfire::NetIn']]],
+  ['dydt_26',['dydt',['../structgridfire_1_1_step_derivatives.html#a1ae99ac1684d8df519f8d6af413d2cb1',1,'gridfire::StepDerivatives']]],
+  ['dynamic_5fengine_5fdiagnostics_2ecpp_27',['dynamic_engine_diagnostics.cpp',['../dynamic__engine__diagnostics_8cpp.html',1,'']]],
+  ['dynamic_5fengine_5fdiagnostics_2eh_28',['dynamic_engine_diagnostics.h',['../dynamic__engine__diagnostics_8h.html',1,'']]],
+  ['dynamicengine_29',['DynamicEngine',['../classgridfire_1_1_dynamic_engine.html',1,'gridfire']]],
+  ['dynamicnetworksolverstrategy_30',['DynamicNetworkSolverStrategy',['../namespacegridfire_1_1solver.html#a8118d08bc25e439754b43a3f5ecc1db3',1,'gridfire::solver']]]
 ];
diff --git a/docs/html/search/all_a.js b/docs/html/search/all_a.js
index a69f793e..529e5eb3 100644
--- a/docs/html/search/all_a.js
+++ b/docs/html/search/all_a.js
@@ -2,54 +2,64 @@ var searchData=
 [
   ['ease_20of_20installation_0',['Ease of Installation',['../index.html#autotoc_md16',1,'']]],
   ['effects_1',['Workflow Components and Effects',['../index.html#autotoc_md51',1,'']]],
-  ['eigenfunctor_2',['EigenFunctor',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a1aa29df77925443796e1e59c1b7b7a60',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::EigenFunctor()']]],
-  ['end_3',['end',['../classgridfire_1_1reaction_1_1_logical_reaction.html#af8d23557326e6c8499fa4919ac0bd972',1,'gridfire::reaction::LogicalReaction::end()'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a054994f733b44293b4d79f3a9b207560',1,'gridfire::reaction::LogicalReaction::end() const'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad19adbee44a71559a53785e3b1fc7e92',1,'gridfire::reaction::TemplatedReactionSet::end()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac128da7417955ef8c5cb2bde5a1293c9',1,'gridfire::reaction::TemplatedReactionSet::end() const']]],
-  ['energy_4',['energy',['../structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b',1,'gridfire::NetIn::energy'],['../structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6',1,'gridfire::NetOut::energy'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf',1,'gridfire::exceptions::StaleEngineTrigger::energy()']]],
-  ['engine_5',['Engine',['../classgridfire_1_1_engine.html',1,'gridfire']]],
-  ['engine_6',['engine',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a53985d354dcaeda96dc39828c6c9d9d1',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['engine_20composition_7',['Engine Composition',['../engine_8h.html#EngineComposition',1,'']]],
-  ['engine_20design_8',['Engine Design',['../engine_8h.html#EngineDesign',1,'']]],
-  ['engine_20views_9',['Engine Views',['../index.html#autotoc_md34',1,'']]],
-  ['engine_2eh_10',['engine.h',['../engine_8h.html',1,'']]],
-  ['engine_5fabstract_2eh_11',['engine_abstract.h',['../engine__abstract_8h.html',1,'']]],
-  ['engine_5fadaptive_2ecpp_12',['engine_adaptive.cpp',['../engine__adaptive_8cpp.html',1,'']]],
-  ['engine_5fadaptive_2eh_13',['engine_adaptive.h',['../engine__adaptive_8h.html',1,'']]],
-  ['engine_5fapprox8_2ecpp_14',['engine_approx8.cpp',['../engine__approx8_8cpp.html',1,'']]],
-  ['engine_5fapprox8_2eh_15',['engine_approx8.h',['../engine__approx8_8h.html',1,'']]],
-  ['engine_5fdefined_2ecpp_16',['engine_defined.cpp',['../engine__defined_8cpp.html',1,'']]],
-  ['engine_5fdefined_2eh_17',['engine_defined.h',['../engine__defined_8h.html',1,'']]],
-  ['engine_5fgraph_2ecpp_18',['engine_graph.cpp',['../engine__graph_8cpp.html',1,'']]],
-  ['engine_5fgraph_2eh_19',['engine_graph.h',['../engine__graph_8h.html',1,'']]],
-  ['engine_5fmultiscale_2ecpp_20',['engine_multiscale.cpp',['../engine__multiscale_8cpp.html',1,'']]],
-  ['engine_5fmultiscale_2eh_21',['engine_multiscale.h',['../engine__multiscale_8h.html',1,'']]],
-  ['engine_5fpriming_2ecpp_22',['engine_priming.cpp',['../engine__priming_8cpp.html',1,'']]],
-  ['engine_5fpriming_2eh_23',['engine_priming.h',['../engine__priming_8h.html',1,'']]],
-  ['engine_5fprocedures_2eh_24',['engine_procedures.h',['../engine__procedures_8h.html',1,'']]],
-  ['engine_5ftypes_2eh_25',['engine_types.h',['../engine__types_8h.html',1,'']]],
-  ['engine_5fview_5fabstract_2eh_26',['engine_view_abstract.h',['../engine__view__abstract_8h.html',1,'']]],
-  ['engine_5fviews_2eh_27',['engine_views.h',['../engine__views_8h.html',1,'']]],
-  ['engineerror_28',['EngineError',['../classgridfire_1_1exceptions_1_1_engine_error.html',1,'gridfire::exceptions::EngineError'],['../structgridfire_1_1expectations_1_1_engine_error.html',1,'gridfire::expectations::EngineError'],['../structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa',1,'gridfire::expectations::EngineError::EngineError()']]],
-  ['engineerrortypes_29',['EngineErrorTypes',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87c',1,'gridfire::expectations']]],
-  ['engineindexerror_30',['EngineIndexError',['../structgridfire_1_1expectations_1_1_engine_index_error.html',1,'gridfire::expectations::EngineIndexError'],['../structgridfire_1_1expectations_1_1_engine_index_error.html#ab44bba2a197d43319e65cd200cd347b0',1,'gridfire::expectations::EngineIndexError::EngineIndexError()']]],
-  ['engines_31',['Engines',['../engine_8h.html#AvailableEngines',1,'Available Engines'],['../index.html#autotoc_md28',1,'Engines']]],
-  ['engines_20and_20views_32',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md64',1,'']]],
-  ['enginet_20gt_20_3a_33',['NetworkSolverStrategy&amp;lt;EngineT&amp;gt;:',['../index.html#autotoc_md37',1,'']]],
-  ['enginetype_34',['EngineType',['../conceptgridfire_1_1_engine_type.html',1,'gridfire']]],
-  ['engineview_35',['EngineView',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
-  ['engineview_3c_20dynamicengine_20_3e_36',['EngineView&lt; DynamicEngine &gt;',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
-  ['engineview_3c_20gridfire_3a_3adynamicengine_20_3e_37',['EngineView&lt; gridfire::DynamicEngine &gt;',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
-  ['engineview_3c_20gridfire_3a_3aengine_20_3e_38',['EngineView&lt; gridfire::Engine &gt;',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
-  ['equilibratenetwork_39',['equilibrateNetwork',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d',1,'gridfire::MultiscalePartitioningEngineView::equilibrateNetwork(const std::vector&lt; double &gt; &amp;Y, double T9, double rho)'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc',1,'gridfire::MultiscalePartitioningEngineView::equilibrateNetwork(const NetIn &amp;netIn)']]],
-  ['error_5fengine_2eh_40',['error_engine.h',['../error__engine_8h.html',1,'']]],
-  ['evaluate_41',['evaluate',['../classgridfire_1_1approx8_1_1_approx8_network.html#a888734a3cdde4259e921e2efece411ee',1,'gridfire::approx8::Approx8Network::evaluate()'],['../classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c',1,'gridfire::Network::evaluate()'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b',1,'gridfire::partition::CompositePartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817',1,'gridfire::partition::PartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5',1,'gridfire::partition::GroundStatePartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681',1,'gridfire::partition::RauscherThielemannPartitionFunction::evaluate()'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f',1,'gridfire::solver::NetworkSolverStrategy::evaluate()'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a',1,'gridfire::solver::DirectNetworkSolver::evaluate()'],['../class_py_partition_function.html#a83aca0bc261734b7d3df8269f730c69b',1,'PyPartitionFunction::evaluate()'],['../class_py_dynamic_network_solver_strategy.html#a2095abb83ed6229ebb27b4883cec51c4',1,'PyDynamicNetworkSolverStrategy::evaluate()']]],
-  ['evaluatederivative_42',['evaluateDerivative',['../classgridfire_1_1partition_1_1_composite_partition_function.html#ac8900afaa5edd24fcb8eaf19e7379183',1,'gridfire::partition::CompositePartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_partition_function.html#a14009bdaca47f3eddf2c6c023845db5a',1,'gridfire::partition::PartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0eff10c7b134d9d4081ad72bbc785c5b',1,'gridfire::partition::GroundStatePartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aaa1e11579b44a88c5f18943cc303c4b4',1,'gridfire::partition::RauscherThielemannPartitionFunction::evaluateDerivative()'],['../class_py_partition_function.html#a260df9689bf698970ebf5104977a3dcf',1,'PyPartitionFunction::evaluateDerivative()']]],
-  ['example_43',['Example',['../md_docs_2static_2usage.html#autotoc_md66',1,'3. Step-by-Step Example'],['../engine_8h.html#AdaptiveEngineViewExample',1,'AdaptiveEngineView Example'],['../index.html#autotoc_md52',1,'Callback Example'],['../index.html#autotoc_md50',1,'Common Workflow Example'],['../index.html#autotoc_md55',1,'Common Workflow Example'],['../engine_8h.html#DefinedEngineViewExample',1,'DefinedEngineView Example'],['../engine_8h.html#GraphEngineExample',1,'GraphEngine Example'],['../engine_8h.html#MultiscalePartitioningEngineViewExample',1,'MultiscalePartitioningEngineView Example'],['../engine_8h.html#NetworkPrimingEngineViewExample',1,'NetworkPrimingEngineView Example']]],
-  ['examples_44',['Examples',['../index.html#autotoc_md18',1,'Examples'],['../engine_8h.html#UsageExamples',1,'Usage Examples'],['../index.html#autotoc_md45',1,'Usage Examples']]],
-  ['exceptions_2eh_45',['exceptions.h',['../exceptions_8h.html',1,'']]],
-  ['excess_5fenergy_46',['excess_energy',['../classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5',1,'gridfire::reaction::Reaction::excess_energy()'],['../classgridfire_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5',1,'gridfire::Reaction::excess_energy()']]],
-  ['expectations_2eh_47',['expectations.h',['../expectations_8h.html',1,'']]],
-  ['expected_5fengine_2eh_48',['expected_engine.h',['../expected__engine_8h.html',1,'']]],
-  ['exporttocsv_49',['exportToCSV',['../classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95',1,'gridfire::GraphEngine']]],
-  ['exporttodot_50',['exportToDot',['../classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929',1,'gridfire::GraphEngine::exportToDot()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18',1,'gridfire::MultiscalePartitioningEngineView::exportToDot()']]],
-  ['extensibility_51',['Python Extensibility',['../index.html#autotoc_md44',1,'']]]
+  ['eigenfunctor_2',['EigenFunctor',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a24463a5e83e096ef368878ad29fdafb6',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::EigenFunctor()']]],
+  ['electron_5fantineutrino_3',['ELECTRON_ANTINEUTRINO',['../namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa8d99b7a21c927a7b8274caaf23290de6',1,'gridfire::rates::weak']]],
+  ['electron_5fcapture_4',['ELECTRON_CAPTURE',['../namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7',1,'gridfire::rates::weak']]],
+  ['electron_5fneutrino_5',['ELECTRON_NEUTRINO',['../namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa3fde0fbf2166dfb3dd60458c535699d8',1,'gridfire::rates::weak']]],
+  ['electronmassg_6',['electronMassG',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8998f5acb979463eeabb14da50fb6856',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['electronmassmev_7',['electronMassMeV',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a24d6517e15c177fb8ca72f08f8eaf509',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['end_8',['end',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#aefaf6c4c32ae54a2882da0e031632a74',1,'gridfire::reaction::LogicalReaclibReaction::end()'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ae0b38d499bf0c9ca58461ea2862a7d5a',1,'gridfire::reaction::LogicalReaclibReaction::end() const'],['../classgridfire_1_1reaction_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987',1,'gridfire::reaction::ReactionSet::end()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a436f9c4b8f8a4e115b19728d57d8e105',1,'gridfire::reaction::ReactionSet::end() const'],['../classgridfire_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987',1,'gridfire::ReactionSet::end()'],['../classgridfire_1_1_reaction_set.html#a436f9c4b8f8a4e115b19728d57d8e105',1,'gridfire::ReactionSet::end() const']]],
+  ['energy_9',['energy',['../structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b',1,'gridfire::NetIn::energy'],['../structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6',1,'gridfire::NetOut::energy'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a1fb4ca773aaad8d1d958a3a0e82d8edd',1,'gridfire::solver::CVODESolverStrategy::CVODEUserData::energy'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf',1,'gridfire::exceptions::StaleEngineTrigger::energy()']]],
+  ['energyderivatives_10',['EnergyDerivatives',['../structgridfire_1_1_energy_derivatives.html',1,'gridfire']]],
+  ['engine_11',['Engine',['../classgridfire_1_1_engine.html',1,'gridfire']]],
+  ['engine_12',['engine',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#af8c233f893bf740e81c5254d84534067',1,'gridfire::solver::CVODESolverStrategy::TimestepContext::engine'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ac44d6bd0f4952d8bfdf487a09264872b',1,'gridfire::solver::CVODESolverStrategy::CVODEUserData::engine']]],
+  ['engine_20composition_13',['Engine Composition',['../engine_8h.html#EngineComposition',1,'']]],
+  ['engine_20design_14',['Engine Design',['../engine_8h.html#EngineDesign',1,'']]],
+  ['engine_20views_15',['Engine Views',['../index.html#autotoc_md34',1,'']]],
+  ['engine_2eh_16',['engine.h',['../engine_8h.html',1,'']]],
+  ['engine_5fabstract_2eh_17',['engine_abstract.h',['../engine__abstract_8h.html',1,'']]],
+  ['engine_5fadaptive_2ecpp_18',['engine_adaptive.cpp',['../engine__adaptive_8cpp.html',1,'']]],
+  ['engine_5fadaptive_2eh_19',['engine_adaptive.h',['../engine__adaptive_8h.html',1,'']]],
+  ['engine_5fapprox8_2ecpp_20',['engine_approx8.cpp',['../engine__approx8_8cpp.html',1,'']]],
+  ['engine_5fapprox8_2eh_21',['engine_approx8.h',['../engine__approx8_8h.html',1,'']]],
+  ['engine_5fdefined_2ecpp_22',['engine_defined.cpp',['../engine__defined_8cpp.html',1,'']]],
+  ['engine_5fdefined_2eh_23',['engine_defined.h',['../engine__defined_8h.html',1,'']]],
+  ['engine_5fgraph_2ecpp_24',['engine_graph.cpp',['../engine__graph_8cpp.html',1,'']]],
+  ['engine_5fgraph_2eh_25',['engine_graph.h',['../engine__graph_8h.html',1,'']]],
+  ['engine_5fmultiscale_2ecpp_26',['engine_multiscale.cpp',['../engine__multiscale_8cpp.html',1,'']]],
+  ['engine_5fmultiscale_2eh_27',['engine_multiscale.h',['../engine__multiscale_8h.html',1,'']]],
+  ['engine_5fpartitioning_5ftrigger_2ecpp_28',['engine_partitioning_trigger.cpp',['../engine__partitioning__trigger_8cpp.html',1,'']]],
+  ['engine_5fpartitioning_5ftrigger_2eh_29',['engine_partitioning_trigger.h',['../engine__partitioning__trigger_8h.html',1,'']]],
+  ['engine_5fpriming_2ecpp_30',['engine_priming.cpp',['../engine__priming_8cpp.html',1,'']]],
+  ['engine_5fpriming_2eh_31',['engine_priming.h',['../engine__priming_8h.html',1,'']]],
+  ['engine_5fprocedures_2eh_32',['engine_procedures.h',['../engine__procedures_8h.html',1,'']]],
+  ['engine_5ftypes_2eh_33',['engine_types.h',['../engine__types_8h.html',1,'']]],
+  ['engine_5fview_5fabstract_2eh_34',['engine_view_abstract.h',['../engine__view__abstract_8h.html',1,'']]],
+  ['engine_5fviews_2eh_35',['engine_views.h',['../engine__views_8h.html',1,'']]],
+  ['engineerror_36',['EngineError',['../classgridfire_1_1exceptions_1_1_engine_error.html',1,'gridfire::exceptions::EngineError'],['../structgridfire_1_1expectations_1_1_engine_error.html',1,'gridfire::expectations::EngineError'],['../structgridfire_1_1expectations_1_1_engine_error.html#a574a18b105ee285f516db535e1e3bdfd',1,'gridfire::expectations::EngineError::EngineError()']]],
+  ['engineerrortypes_37',['EngineErrorTypes',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87c',1,'gridfire::expectations']]],
+  ['engineindexerror_38',['EngineIndexError',['../structgridfire_1_1expectations_1_1_engine_index_error.html',1,'gridfire::expectations::EngineIndexError'],['../structgridfire_1_1expectations_1_1_engine_index_error.html#ab44bba2a197d43319e65cd200cd347b0',1,'gridfire::expectations::EngineIndexError::EngineIndexError()']]],
+  ['engines_39',['Engines',['../engine_8h.html#AvailableEngines',1,'Available Engines'],['../index.html#autotoc_md28',1,'Engines']]],
+  ['engines_20and_20views_40',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md64',1,'']]],
+  ['enginet_20gt_20_3a_41',['NetworkSolverStrategy&amp;lt;EngineT&amp;gt;:',['../index.html#autotoc_md37',1,'']]],
+  ['enginetype_42',['EngineType',['../conceptgridfire_1_1_engine_type.html',1,'gridfire']]],
+  ['engineview_43',['EngineView',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
+  ['engineview_3c_20dynamicengine_20_3e_44',['EngineView&lt; DynamicEngine &gt;',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
+  ['engineview_3c_20gridfire_3a_3adynamicengine_20_3e_45',['EngineView&lt; gridfire::DynamicEngine &gt;',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
+  ['engineview_3c_20gridfire_3a_3aengine_20_3e_46',['EngineView&lt; gridfire::Engine &gt;',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
+  ['equilibratenetwork_47',['equilibrateNetwork',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a2f0c45d4e2b2f9de5d961088f3ab0a9a',1,'gridfire::MultiscalePartitioningEngineView::equilibrateNetwork(const fourdst::composition::Composition &amp;comp, double T9, double rho)'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc',1,'gridfire::MultiscalePartitioningEngineView::equilibrateNetwork(const NetIn &amp;netIn)']]],
+  ['error_5fengine_2eh_48',['error_engine.h',['../error__engine_8h.html',1,'']]],
+  ['evaluate_49',['evaluate',['../classgridfire_1_1approx8_1_1_approx8_network.html#a888734a3cdde4259e921e2efece411ee',1,'gridfire::approx8::Approx8Network::evaluate()'],['../classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c',1,'gridfire::Network::evaluate()'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b',1,'gridfire::partition::CompositePartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817',1,'gridfire::partition::PartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5',1,'gridfire::partition::GroundStatePartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681',1,'gridfire::partition::RauscherThielemannPartitionFunction::evaluate()'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f',1,'gridfire::solver::NetworkSolverStrategy::evaluate()'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab8224d205ea3a28d9c723631c2f00b53',1,'gridfire::solver::CVODESolverStrategy::evaluate()'],['../class_py_partition_function.html#a83aca0bc261734b7d3df8269f730c69b',1,'PyPartitionFunction::evaluate()'],['../class_py_dynamic_network_solver_strategy.html#a2095abb83ed6229ebb27b4883cec51c4',1,'PyDynamicNetworkSolverStrategy::evaluate()']]],
+  ['evaluatederivative_50',['evaluateDerivative',['../classgridfire_1_1partition_1_1_composite_partition_function.html#ac8900afaa5edd24fcb8eaf19e7379183',1,'gridfire::partition::CompositePartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_partition_function.html#a14009bdaca47f3eddf2c6c023845db5a',1,'gridfire::partition::PartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0eff10c7b134d9d4081ad72bbc785c5b',1,'gridfire::partition::GroundStatePartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aaa1e11579b44a88c5f18943cc303c4b4',1,'gridfire::partition::RauscherThielemannPartitionFunction::evaluateDerivative()'],['../class_py_partition_function.html#a260df9689bf698970ebf5104977a3dcf',1,'PyPartitionFunction::evaluateDerivative()']]],
+  ['everynthtrigger_51',['EveryNthTrigger',['../classgridfire_1_1trigger_1_1_every_nth_trigger.html',1,'gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69e5a3061926e1cd36fbd0a5285fa0a7',1,'gridfire::trigger::EveryNthTrigger::EveryNthTrigger()']]],
+  ['evgrelation_52',['eVgRelation',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#af834029caff08f9d5f7ff3a817ade469',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['example_53',['Example',['../md_docs_2static_2usage.html#autotoc_md66',1,'3. Step-by-Step Example'],['../engine_8h.html#AdaptiveEngineViewExample',1,'AdaptiveEngineView Example'],['../index.html#autotoc_md52',1,'Callback Example'],['../index.html#autotoc_md50',1,'Common Workflow Example'],['../index.html#autotoc_md55',1,'Common Workflow Example'],['../engine_8h.html#DefinedEngineViewExample',1,'DefinedEngineView Example'],['../engine_8h.html#GraphEngineExample',1,'GraphEngine Example'],['../engine_8h.html#MultiscalePartitioningEngineViewExample',1,'MultiscalePartitioningEngineView Example'],['../engine_8h.html#NetworkPrimingEngineViewExample',1,'NetworkPrimingEngineView Example']]],
+  ['examples_54',['Examples',['../index.html#autotoc_md18',1,'Examples'],['../engine_8h.html#UsageExamples',1,'Usage Examples'],['../index.html#autotoc_md45',1,'Usage Examples']]],
+  ['exceptions_2eh_55',['exceptions.h',['../exceptions_8h.html',1,'']]],
+  ['excess_5fenergy_56',['excess_energy',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0b30c49925823c87980b4fca17c8282e',1,'gridfire::reaction::ReaclibReaction']]],
+  ['expectations_2eh_57',['expectations.h',['../expectations_8h.html',1,'']]],
+  ['expected_5fengine_2eh_58',['expected_engine.h',['../expected__engine_8h.html',1,'']]],
+  ['exporttocsv_59',['exportToCSV',['../classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95',1,'gridfire::GraphEngine']]],
+  ['exporttodot_60',['exportToDot',['../classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929',1,'gridfire::GraphEngine::exportToDot()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#adfa1e133c49c0ef78b374d37e90a3372',1,'gridfire::MultiscalePartitioningEngineView::exportToDot()']]],
+  ['extensibility_61',['Python Extensibility',['../index.html#autotoc_md44',1,'']]]
 ];
diff --git a/docs/html/search/all_b.js b/docs/html/search/all_b.js
index 608d839e..851c595a 100644
--- a/docs/html/search/all_b.js
+++ b/docs/html/search/all_b.js
@@ -7,23 +7,24 @@ var searchData=
   ['failure_4',['FAILURE',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca36fc6065a3e970bc3e6b2e59da52bf2a',1,'gridfire::expectations']]],
   ['fifthorder_5',['FifthOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a5105376c2b90747e00bed5bf2953dd56',1,'gridfire']]],
   ['filedefinedengineview_6',['FileDefinedEngineView',['../classgridfire_1_1_file_defined_engine_view.html',1,'gridfire::FileDefinedEngineView'],['../classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd',1,'gridfire::FileDefinedEngineView::FileDefinedEngineView()']]],
-  ['finalizeactiveset_7',['finalizeActiveSet',['../classgridfire_1_1_adaptive_engine_view.html#aa79fb382c98461b02a2c30668491e6c5',1,'gridfire::AdaptiveEngineView']]],
+  ['finalizeactiveset_7',['finalizeActiveSet',['../classgridfire_1_1_adaptive_engine_view.html#a7b8b3a786b973e4383e721358e61b7ed',1,'gridfire::AdaptiveEngineView']]],
   ['find_8',['find',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a12058e121981294f447e69a467fd84cd',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
-  ['finddominantcreationchannel_9',['findDominantCreationChannel',['../namespacegridfire.html#aefc63ddbfe97dcb4178c94dfd1c4b256',1,'gridfire']]],
+  ['finddominantcreationchannel_9',['findDominantCreationChannel',['../namespacegridfire.html#a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f',1,'gridfire']]],
   ['findreachablespecies_10',['findReachableSpecies',['../classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b',1,'gridfire::AdaptiveEngineView']]],
   ['flow_11',['Code Architecture and Logical Flow',['../index.html#autotoc_md27',1,'']]],
   ['flowrate_12',['flowRate',['../structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a6c2e9087f6c8af5d89a5f0de7bd4a5b4',1,'gridfire::AdaptiveEngineView::ReactionFlow']]],
   ['for_20developers_13',['source for developers',['../index.html#autotoc_md7',1,'']]],
-  ['for_5fsparse_5fjac_14',['for_sparse_jac',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4',1,'gridfire::GraphEngine::AtomicReverseRate']]],
-  ['formatnucleartimescalelogstring_15',['formatNuclearTimescaleLogString',['../namespacegridfire_1_1utils.html#af56693a70d9e2b40c8ae2c3bcd4b26c8',1,'gridfire::utils']]],
-  ['formatstringlookup_16',['FormatStringLookup',['../namespacegridfire.html#a4e9cabad30b57d636c2f0d73d8cc6bb4',1,'gridfire']]],
-  ['forward_17',['forward',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0',1,'gridfire::GraphEngine::AtomicReverseRate']]],
-  ['fourthorder_18',['FourthOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a100e3bf0197221c19b222badf42aa964',1,'gridfire']]],
-  ['from_20source_19',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md62',1,'']]],
-  ['front_20',['FRONT',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
-  ['full_21',['Full',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75',1,'gridfire']]],
-  ['full_5fsuccess_22',['FULL_SUCCESS',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a',1,'gridfire']]],
-  ['functions_23',['Available Partition Functions',['../index.html#autotoc_md31',1,'']]],
-  ['funding_24',['Funding',['../index.html#autotoc_md2',1,'']]],
-  ['future_20solver_20implementations_25',['Future Solver Implementations',['../index.html#autotoc_md43',1,'']]]
+  ['for_5fsparse_5fjac_14',['for_sparse_jac',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4',1,'gridfire::GraphEngine::AtomicReverseRate::for_sparse_jac()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a976a2ef2e58439429c1a6e94c27f4662',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::for_sparse_jac()']]],
+  ['format_5ftable_15',['format_table',['../namespacegridfire_1_1utils.html#a6451ba6762273b91a8281043cfaa5d2a',1,'gridfire::utils']]],
+  ['formatnucleartimescalelogstring_16',['formatNuclearTimescaleLogString',['../namespacegridfire_1_1utils.html#a05fda32d3fc4ab10060b8c4c251c2f3d',1,'gridfire::utils']]],
+  ['formatstringlookup_17',['FormatStringLookup',['../namespacegridfire.html#a4e9cabad30b57d636c2f0d73d8cc6bb4',1,'gridfire']]],
+  ['forward_18',['forward',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0',1,'gridfire::GraphEngine::AtomicReverseRate::forward()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ab4f12e8da29d4d158fb0adf2db31b4bb',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::forward()']]],
+  ['fourthorder_19',['FourthOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a100e3bf0197221c19b222badf42aa964',1,'gridfire']]],
+  ['from_20source_20',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md62',1,'']]],
+  ['front_21',['FRONT',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+  ['full_22',['Full',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75',1,'gridfire']]],
+  ['full_5fsuccess_23',['FULL_SUCCESS',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a',1,'gridfire']]],
+  ['functions_24',['Available Partition Functions',['../index.html#autotoc_md31',1,'']]],
+  ['funding_25',['Funding',['../index.html#autotoc_md2',1,'']]],
+  ['future_20solver_20implementations_26',['Future Solver Implementations',['../index.html#autotoc_md43',1,'']]]
 ];
diff --git a/docs/html/search/all_c.js b/docs/html/search/all_c.js
index b7152c83..804f37a8 100644
--- a/docs/html/search/all_c.js
+++ b/docs/html/search/all_c.js
@@ -4,55 +4,73 @@ var searchData=
   ['g_5fnorm_5flow_1',['G_norm_low',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a7d291ba80f958fe34ae72b21c6fab380',1,'gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints']]],
   ['gcc_2',['Clang vs. GCC',['../index.html#autotoc_md24',1,'']]],
   ['generatejacobianmatrix_3',['GenerateJacobianMatrix',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9e720102de6020a01552bc0e8935c566',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['generatejacobianmatrix_4',['generateJacobianMatrix',['../classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d',1,'gridfire::DynamicEngine::generateJacobianMatrix(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho) const =0'],['../classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7',1,'gridfire::DynamicEngine::generateJacobianMatrix(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const'],['../classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119',1,'gridfire::GraphEngine::generateJacobianMatrix(const std::vector&lt; double &gt; &amp;Y_dynamic, const double T9, const double rho) const override'],['../classgridfire_1_1_graph_engine.html#a9687eef88c97eeb7f8680acb230f8ac1',1,'gridfire::GraphEngine::generateJacobianMatrix(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const override'],['../classgridfire_1_1_adaptive_engine_view.html#a03fc187d3d306b9058103b9522cbbaeb',1,'gridfire::AdaptiveEngineView::generateJacobianMatrix()'],['../classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae',1,'gridfire::DefinedEngineView::generateJacobianMatrix()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#acdf5ad8765290ea2b78170235aea391d',1,'gridfire::MultiscalePartitioningEngineView::generateJacobianMatrix()'],['../class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d',1,'PyDynamicEngine::generateJacobianMatrix(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho) const override'],['../class_py_dynamic_engine.html#aa0f1fd3f0c0185395193d1b6897d64c5',1,'PyDynamicEngine::generateJacobianMatrix(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const gridfire::SparsityPattern &amp;sparsityPattern) const override']]],
+  ['generatejacobianmatrix_4',['generateJacobianMatrix',['../classgridfire_1_1_dynamic_engine.html#a21d15531309456ee83f7675251e7a1bf',1,'gridfire::DynamicEngine::generateJacobianMatrix(const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0'],['../classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd',1,'gridfire::DynamicEngine::generateJacobianMatrix(const fourdst::composition::Composition &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const'],['../classgridfire_1_1_graph_engine.html#ae11f6267077025ca342e2e263ad87e5e',1,'gridfire::GraphEngine::generateJacobianMatrix(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override'],['../classgridfire_1_1_graph_engine.html#a4e0bbc6448999e2ef06879270b7d3dec',1,'gridfire::GraphEngine::generateJacobianMatrix(const fourdst::composition::Composition &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const override'],['../classgridfire_1_1_adaptive_engine_view.html#a8da7664cf483cba7f979f855a74c3559',1,'gridfire::AdaptiveEngineView::generateJacobianMatrix()'],['../classgridfire_1_1_defined_engine_view.html#ab80eadd713a40e9263e5231737e956d0',1,'gridfire::DefinedEngineView::generateJacobianMatrix()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ab9f71bc9a1c0f98ec9cc1c7da00fd975',1,'gridfire::MultiscalePartitioningEngineView::generateJacobianMatrix()'],['../class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d',1,'PyDynamicEngine::generateJacobianMatrix(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho) const override'],['../class_py_dynamic_engine.html#aa0f1fd3f0c0185395193d1b6897d64c5',1,'PyDynamicEngine::generateJacobianMatrix(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const gridfire::SparsityPattern &amp;sparsityPattern) const override']]],
   ['generatestoichiometrymatrix_5',['generateStoichiometryMatrix',['../classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f',1,'gridfire::DynamicEngine::generateStoichiometryMatrix()'],['../classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38',1,'gridfire::GraphEngine::generateStoichiometryMatrix()'],['../classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111',1,'gridfire::AdaptiveEngineView::generateStoichiometryMatrix()'],['../classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6',1,'gridfire::DefinedEngineView::generateStoichiometryMatrix()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a',1,'gridfire::MultiscalePartitioningEngineView::generateStoichiometryMatrix()'],['../class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9',1,'PyDynamicEngine::generateStoichiometryMatrix()']]],
-  ['get_5fall_5freactions_6',['get_all_reactions',['../namespacegridfire_1_1reaclib.html#a91c7971c9d0a2971b9a6fa4d841c761d',1,'gridfire::reaclib']]],
-  ['get_5finterpolation_5fpoints_7',['get_interpolation_points',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3baed110ab1b12e22071dc2d92c55db9',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
-  ['get_5ft9_5farray_8',['get_T9_array',['../namespacegridfire_1_1approx8.html#a20f9c48e60a5abf0b6868d1d05080222',1,'gridfire::approx8']]],
-  ['getbaseengine_9',['getBaseEngine',['../classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c',1,'gridfire::AdaptiveEngineView::getBaseEngine()'],['../classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484',1,'gridfire::DefinedEngineView::getBaseEngine()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1',1,'gridfire::MultiscalePartitioningEngineView::getBaseEngine()'],['../classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6',1,'gridfire::EngineView::getBaseEngine()'],['../class_py_engine_view.html#a3cd83dc57b521c65a14edf70357a8845',1,'PyEngineView::getBaseEngine()'],['../class_py_dynamic_engine_view.html#a51680b135cfc3eea40daf9ef5aa903e0',1,'PyDynamicEngineView::getBaseEngine()']]],
-  ['getdepth_10',['getDepth',['../classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9',1,'gridfire::DynamicEngine::getDepth()'],['../classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4',1,'gridfire::GraphEngine::getDepth()'],['../class_py_dynamic_engine.html#adba68716d832b6100e08d32fbc36f13c',1,'PyDynamicEngine::getDepth()']]],
-  ['getdynamicspecies_11',['getDynamicSpecies',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['getfastspecies_12',['getFastSpecies',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['getformat_13',['getFormat',['../classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118',1,'gridfire::Network']]],
-  ['getjacobianmatrixentry_14',['getJacobianMatrixEntry',['../classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07',1,'gridfire::DynamicEngine::getJacobianMatrixEntry()'],['../classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c',1,'gridfire::GraphEngine::getJacobianMatrixEntry()'],['../classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58',1,'gridfire::AdaptiveEngineView::getJacobianMatrixEntry()'],['../classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b',1,'gridfire::DefinedEngineView::getJacobianMatrixEntry()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ac961484383e86d9712a424728e068633',1,'gridfire::MultiscalePartitioningEngineView::getJacobianMatrixEntry()'],['../class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159',1,'PyDynamicEngine::getJacobianMatrixEntry()']]],
-  ['getmolarabundance_15',['getMolarAbundance',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea',1,'gridfire::exceptions::StaleEngineTrigger']]],
-  ['getnetreactionstoichiometry_16',['getNetReactionStoichiometry',['../classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9',1,'gridfire::GraphEngine']]],
-  ['getnetworkfile_17',['getNetworkFile',['../classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718',1,'gridfire::FileDefinedEngineView']]],
-  ['getnetworkreactions_18',['getNetworkReactions',['../classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037',1,'gridfire::DynamicEngine::getNetworkReactions()'],['../classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da',1,'gridfire::GraphEngine::getNetworkReactions()'],['../classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c',1,'gridfire::AdaptiveEngineView::getNetworkReactions()'],['../classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d',1,'gridfire::DefinedEngineView::getNetworkReactions()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ad751f2c1306895ee74a61f2071ca96eb',1,'gridfire::MultiscalePartitioningEngineView::getNetworkReactions()'],['../class_py_dynamic_engine.html#a5988cfba247631ba6c00795cafda9a38',1,'PyDynamicEngine::getNetworkReactions()']]],
-  ['getnetworkspecies_19',['getNetworkSpecies',['../classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3',1,'gridfire::Engine::getNetworkSpecies()'],['../classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767',1,'gridfire::GraphEngine::getNetworkSpecies()'],['../classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1',1,'gridfire::AdaptiveEngineView::getNetworkSpecies()'],['../classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211',1,'gridfire::DefinedEngineView::getNetworkSpecies()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80',1,'gridfire::MultiscalePartitioningEngineView::getNetworkSpecies()'],['../class_py_engine.html#a2d240423899e039c2ca688e96f8af1f2',1,'PyEngine::getNetworkSpecies()'],['../class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d',1,'PyDynamicEngine::getNetworkSpecies()']]],
-  ['getparser_20',['getParser',['../classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f',1,'gridfire::FileDefinedEngineView']]],
-  ['getpartitionfunction_21',['getPartitionFunction',['../classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44',1,'gridfire::GraphEngine']]],
-  ['getreactionsetspecies_22',['getReactionSetSpecies',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a1596de3439735a45ac344fa85ace6c82',1,'gridfire::reaction::TemplatedReactionSet']]],
-  ['getscreeningmodel_23',['getScreeningModel',['../classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0',1,'gridfire::DynamicEngine::getScreeningModel()'],['../classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a',1,'gridfire::GraphEngine::getScreeningModel()'],['../classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f',1,'gridfire::AdaptiveEngineView::getScreeningModel()'],['../classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c',1,'gridfire::DefinedEngineView::getScreeningModel()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82',1,'gridfire::MultiscalePartitioningEngineView::getScreeningModel()'],['../class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5',1,'PyDynamicEngine::getScreeningModel()']]],
-  ['getspeciesdestructiontimescales_24',['GetSpeciesDestructionTimescales',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['getspeciesdestructiontimescales_25',['getSpeciesDestructionTimescales',['../classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6',1,'gridfire::DynamicEngine::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_graph_engine.html#aef8f6bde24d27345067b71084330c7da',1,'gridfire::GraphEngine::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_adaptive_engine_view.html#a522e78bce9ff062939572248d57f8cea',1,'gridfire::AdaptiveEngineView::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491',1,'gridfire::DefinedEngineView::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aa38c367ef3c74d012ccd10521cd5a727',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesDestructionTimescales()'],['../class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3',1,'PyDynamicEngine::getSpeciesDestructionTimescales()']]],
-  ['getspeciesindex_26',['getSpeciesIndex',['../classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9',1,'gridfire::DynamicEngine::getSpeciesIndex()'],['../classgridfire_1_1_graph_engine.html#a914f6abc61805cddaebcb8f3cf470dda',1,'gridfire::GraphEngine::getSpeciesIndex()'],['../classgridfire_1_1_adaptive_engine_view.html#a9055feb245524a5a9549ace935f059ff',1,'gridfire::AdaptiveEngineView::getSpeciesIndex()'],['../classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3',1,'gridfire::DefinedEngineView::getSpeciesIndex()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a91d32b7197fcb27ee697d5bfde960f3f',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesIndex()'],['../class_py_dynamic_engine.html#a2ee1d745c1c21b9fcb652c96c42f1091',1,'PyDynamicEngine::getSpeciesIndex()']]],
-  ['getspeciestimescales_27',['GetSpeciesTimescales',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['getspeciestimescales_28',['getSpeciesTimescales',['../classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813',1,'gridfire::DynamicEngine::getSpeciesTimescales()'],['../classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581',1,'gridfire::GraphEngine::getSpeciesTimescales()'],['../classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9',1,'gridfire::AdaptiveEngineView::getSpeciesTimescales()'],['../classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72',1,'gridfire::DefinedEngineView::getSpeciesTimescales()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a560612347bbd5b7b380e990624d01105',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesTimescales()'],['../class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22',1,'PyDynamicEngine::getSpeciesTimescales()']]],
-  ['getstate_29',['getState',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5',1,'gridfire::exceptions::StaleEngineTrigger']]],
-  ['getstoichiometrymatrixentry_30',['getStoichiometryMatrixEntry',['../classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f',1,'gridfire::DynamicEngine::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152',1,'gridfire::GraphEngine::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9',1,'gridfire::AdaptiveEngineView::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2',1,'gridfire::DefinedEngineView::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a510b920dea726aef859ac1f6d051807e',1,'gridfire::MultiscalePartitioningEngineView::getStoichiometryMatrixEntry()'],['../class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83',1,'PyDynamicEngine::getStoichiometryMatrixEntry()']]],
-  ['good_20platforms_31',['Currently, known good platforms',['../index.html#autotoc_md10',1,'']]],
-  ['graphengine_32',['GraphEngine',['../classgridfire_1_1_graph_engine.html',1,'gridfire::GraphEngine'],['../classgridfire_1_1_graph_engine.html#afad967546b611d9c005268760feb75d5',1,'gridfire::GraphEngine::GraphEngine(const fourdst::composition::Composition &amp;composition, const BuildDepthType=NetworkBuildDepth::Full)'],['../classgridfire_1_1_graph_engine.html#a39d9838ed40bea71ee6c552bb5969026',1,'gridfire::GraphEngine::GraphEngine(const fourdst::composition::Composition &amp;composition, const partition::PartitionFunction &amp;partitionFunction, const BuildDepthType buildDepth=NetworkBuildDepth::Full)'],['../classgridfire_1_1_graph_engine.html#a1e7e851dfa21d41c2dc533ba56fc4c7b',1,'gridfire::GraphEngine::GraphEngine(const reaction::LogicalReactionSet &amp;reactions)'],['../index.html#autotoc_md29',1,'GraphEngine']]],
-  ['graphengine_20configuration_20options_33',['GraphEngine Configuration Options',['../index.html#autotoc_md30',1,'']]],
-  ['graphengine_20example_34',['GraphEngine Example',['../engine_8h.html#GraphEngineExample',1,'']]],
-  ['graphengine_20initialization_35',['GraphEngine Initialization',['../index.html#autotoc_md47',1,'']]],
-  ['gridfire_36',['GridFire',['../index.html',1,'GridFire'],['../index.html#autotoc_md33',1,'Reaclib in GridFire']]],
-  ['gridfire_37',['gridfire',['../namespacegridfire.html',1,'']]],
-  ['gridfire_20python_20usage_20guide_38',['GridFire Python Usage Guide',['../md_docs_2static_2usage.html',1,'']]],
-  ['gridfire_3a_3aapprox8_39',['approx8',['../namespacegridfire_1_1approx8.html',1,'gridfire']]],
-  ['gridfire_3a_3aexceptions_40',['exceptions',['../namespacegridfire_1_1exceptions.html',1,'gridfire']]],
-  ['gridfire_3a_3aexpectations_41',['expectations',['../namespacegridfire_1_1expectations.html',1,'gridfire']]],
-  ['gridfire_3a_3aio_42',['io',['../namespacegridfire_1_1io.html',1,'gridfire']]],
-  ['gridfire_3a_3apartition_43',['partition',['../namespacegridfire_1_1partition.html',1,'gridfire']]],
-  ['gridfire_3a_3apartition_3a_3arecord_44',['record',['../namespacegridfire_1_1partition_1_1record.html',1,'gridfire::partition']]],
-  ['gridfire_3a_3areaclib_45',['reaclib',['../namespacegridfire_1_1reaclib.html',1,'gridfire']]],
-  ['gridfire_3a_3areaction_46',['reaction',['../namespacegridfire_1_1reaction.html',1,'gridfire']]],
-  ['gridfire_3a_3ascreening_47',['screening',['../namespacegridfire_1_1screening.html',1,'gridfire']]],
-  ['gridfire_3a_3asolver_48',['solver',['../namespacegridfire_1_1solver.html',1,'gridfire']]],
-  ['gridfire_3a_3autils_49',['utils',['../namespacegridfire_1_1utils.html',1,'gridfire']]],
-  ['ground_5fstate_5fspin_50',['ground_state_spin',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aec714697f3f5102124561252233fc350',1,'gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData::ground_state_spin'],['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#acf5c38826050594aee98d746d0ba40b2',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord::ground_state_spin']]],
-  ['groundstate_51',['GroundState',['../namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335',1,'gridfire::partition']]],
-  ['groundstatepartitionfunction_52',['GroundStatePartitionFunction',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html',1,'gridfire::partition::GroundStatePartitionFunction'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a8afa2aee993eb3ed8d01c887d39b57eb',1,'gridfire::partition::GroundStatePartitionFunction::GroundStatePartitionFunction()']]],
-  ['gt_20_3a_53',['NetworkSolverStrategy&amp;lt;EngineT&amp;gt;:',['../index.html#autotoc_md37',1,'']]],
-  ['guide_54',['GridFire Python Usage Guide',['../md_docs_2static_2usage.html',1,'']]]
+  ['get_5fall_5freaclib_5freactions_6',['get_all_reaclib_reactions',['../namespacegridfire_1_1reaclib.html#a5f2326f2f76cb1895d6cf5daed9b030b',1,'gridfire::reaclib']]],
+  ['get_5fall_5freactions_7',['get_all_reactions',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a9ab9f6f64455eb46172ebda5e8cc3ec5',1,'gridfire::rates::weak::WeakReactionMap']]],
+  ['get_5finterpolation_5fpoints_8',['get_interpolation_points',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3baed110ab1b12e22071dc2d92c55db9',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+  ['get_5flog_5fneutrino_5floss_5ffrom_5fpayload_9',['get_log_neutrino_loss_from_payload',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a7f0d21c80fbbf94ead613e678d44b835',1,'gridfire::rates::weak::WeakReaction']]],
+  ['get_5flog_5frate_5ffrom_5fpayload_10',['get_log_rate_from_payload',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a14555633289fc3822e927afca7401e49',1,'gridfire::rates::weak::WeakReaction']]],
+  ['get_5frate_5fderivatives_11',['get_rate_derivatives',['../classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a48cec4c8f1e117f73d7e88c3597b4d16',1,'gridfire::rates::weak::WeakRateInterpolator']]],
+  ['get_5frates_12',['get_rates',['../classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ae36a65c29c34b004111d266dc668107b',1,'gridfire::rates::weak::WeakRateInterpolator']]],
+  ['get_5fspecies_5freactions_13',['get_species_reactions',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a290da6766a6d3094a5aae8b7cbcd0d70',1,'gridfire::rates::weak::WeakReactionMap::get_species_reactions(const fourdst::atomic::Species &amp;species) const'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#ad7345da84824495fb21c969c1a9c80f5',1,'gridfire::rates::weak::WeakReactionMap::get_species_reactions(const std::string &amp;species_name) const']]],
+  ['get_5fstdout_5flogging_5fenabled_14',['get_stdout_logging_enabled',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a87b7b39e2a15cc30b118c8e6fda9a1a6',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['get_5ft9_5farray_15',['get_T9_array',['../namespacegridfire_1_1approx8.html#a20f9c48e60a5abf0b6868d1d05080222',1,'gridfire::approx8']]],
+  ['getbaseengine_16',['getBaseEngine',['../classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c',1,'gridfire::AdaptiveEngineView::getBaseEngine()'],['../classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484',1,'gridfire::DefinedEngineView::getBaseEngine()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1',1,'gridfire::MultiscalePartitioningEngineView::getBaseEngine()'],['../classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6',1,'gridfire::EngineView::getBaseEngine()'],['../class_py_engine_view.html#a3cd83dc57b521c65a14edf70357a8845',1,'PyEngineView::getBaseEngine()'],['../class_py_dynamic_engine_view.html#a51680b135cfc3eea40daf9ef5aa903e0',1,'PyDynamicEngineView::getBaseEngine()']]],
+  ['getcelldata_17',['getCellData',['../classgridfire_1_1utils_1_1_column_base.html#a5e07c8e33c96ee8095ebefbf9b75cb36',1,'gridfire::utils::ColumnBase::getCellData()'],['../classgridfire_1_1utils_1_1_column.html#a5bd0ad730a684e1a8b583c5c27cca6e8',1,'gridfire::utils::Column::getCellData()']]],
+  ['getdepth_18',['getDepth',['../classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9',1,'gridfire::DynamicEngine::getDepth()'],['../classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4',1,'gridfire::GraphEngine::getDepth()'],['../class_py_dynamic_engine.html#adba68716d832b6100e08d32fbc36f13c',1,'PyDynamicEngine::getDepth()']]],
+  ['getdynamicspecies_19',['getDynamicSpecies',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['getfastspecies_20',['getFastSpecies',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['getformat_21',['getFormat',['../classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118',1,'gridfire::Network']]],
+  ['getheader_22',['getHeader',['../classgridfire_1_1utils_1_1_column_base.html#a4dd5f1409d3190eab9ba07eb6e611248',1,'gridfire::utils::ColumnBase::getHeader()'],['../classgridfire_1_1utils_1_1_column.html#ad6a4f9aee1321e90896e5f4583d7311f',1,'gridfire::utils::Column::getHeader()']]],
+  ['getjacobianmatrixentry_23',['getJacobianMatrixEntry',['../classgridfire_1_1_dynamic_engine.html#a88dbf350dc0ea3e2b64d825f489e0d60',1,'gridfire::DynamicEngine::getJacobianMatrixEntry()'],['../classgridfire_1_1_graph_engine.html#a8ab5308629b8707922e5954776254aa6',1,'gridfire::GraphEngine::getJacobianMatrixEntry()'],['../classgridfire_1_1_adaptive_engine_view.html#adf3b8a5734983509ca02b7a1a480119f',1,'gridfire::AdaptiveEngineView::getJacobianMatrixEntry()'],['../classgridfire_1_1_defined_engine_view.html#aa49532266ff959ac66f501336f102ce8',1,'gridfire::DefinedEngineView::getJacobianMatrixEntry()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a586da5402750151fee5db2666785b6e4',1,'gridfire::MultiscalePartitioningEngineView::getJacobianMatrixEntry()'],['../class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159',1,'PyDynamicEngine::getJacobianMatrixEntry()']]],
+  ['getmolarabundance_24',['getMolarAbundance',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea',1,'gridfire::exceptions::StaleEngineTrigger']]],
+  ['getnetreactionstoichiometry_25',['getNetReactionStoichiometry',['../classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9',1,'gridfire::GraphEngine']]],
+  ['getnetworkfile_26',['getNetworkFile',['../classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718',1,'gridfire::FileDefinedEngineView']]],
+  ['getnetworkreactions_27',['getNetworkReactions',['../classgridfire_1_1_dynamic_engine.html#af496e04f7be9a0a51ac65dc95f901ffe',1,'gridfire::DynamicEngine::getNetworkReactions()'],['../classgridfire_1_1_graph_engine.html#a3b7f3ba85821165f58f168bc68f86b2d',1,'gridfire::GraphEngine::getNetworkReactions()'],['../classgridfire_1_1_adaptive_engine_view.html#a3247c1e6a76de5622223ee7b5ca3452a',1,'gridfire::AdaptiveEngineView::getNetworkReactions()'],['../classgridfire_1_1_defined_engine_view.html#a5f9db5a9287aa03b2fa4d516e9a576b6',1,'gridfire::DefinedEngineView::getNetworkReactions()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a253e51d6dc7226a863a123683049af61',1,'gridfire::MultiscalePartitioningEngineView::getNetworkReactions()'],['../class_py_dynamic_engine.html#a1d5143640666631501cf229bc491516e',1,'PyDynamicEngine::getNetworkReactions()']]],
+  ['getnetworkspecies_28',['getNetworkSpecies',['../classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3',1,'gridfire::Engine::getNetworkSpecies()'],['../classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767',1,'gridfire::GraphEngine::getNetworkSpecies()'],['../classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1',1,'gridfire::AdaptiveEngineView::getNetworkSpecies()'],['../classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211',1,'gridfire::DefinedEngineView::getNetworkSpecies()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80',1,'gridfire::MultiscalePartitioningEngineView::getNetworkSpecies()'],['../class_py_engine.html#a2d240423899e039c2ca688e96f8af1f2',1,'PyEngine::getNetworkSpecies()'],['../class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d',1,'PyDynamicEngine::getNetworkSpecies()']]],
+  ['getparser_29',['getParser',['../classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f',1,'gridfire::FileDefinedEngineView']]],
+  ['getpartitionfunction_30',['getPartitionFunction',['../classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44',1,'gridfire::GraphEngine']]],
+  ['getreactionsetspecies_31',['getReactionSetSpecies',['../classgridfire_1_1reaction_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b',1,'gridfire::reaction::ReactionSet::getReactionSetSpecies()'],['../classgridfire_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b',1,'gridfire::ReactionSet::getReactionSetSpecies()']]],
+  ['getrowcount_32',['getRowCount',['../classgridfire_1_1utils_1_1_column_base.html#ab6e4cb14c8a0ad7b6b9ad0fbde766cba',1,'gridfire::utils::ColumnBase::getRowCount()'],['../classgridfire_1_1utils_1_1_column.html#a7ff9084a0486fb8b08edfe866480568b',1,'gridfire::utils::Column::getRowCount()']]],
+  ['getscreeningmodel_33',['getScreeningModel',['../classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0',1,'gridfire::DynamicEngine::getScreeningModel()'],['../classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a',1,'gridfire::GraphEngine::getScreeningModel()'],['../classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f',1,'gridfire::AdaptiveEngineView::getScreeningModel()'],['../classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c',1,'gridfire::DefinedEngineView::getScreeningModel()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82',1,'gridfire::MultiscalePartitioningEngineView::getScreeningModel()'],['../class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5',1,'PyDynamicEngine::getScreeningModel()']]],
+  ['getspeciesdestructiontimescales_34',['GetSpeciesDestructionTimescales',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['getspeciesdestructiontimescales_35',['getSpeciesDestructionTimescales',['../classgridfire_1_1_dynamic_engine.html#a25c040d3078f6ff2ef38f733eb68f1fa',1,'gridfire::DynamicEngine::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_graph_engine.html#a47df5a9c448dd1ce8654df819a6cc8ff',1,'gridfire::GraphEngine::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_adaptive_engine_view.html#aa861db5f6fc4e85fb51f524e4e1367c6',1,'gridfire::AdaptiveEngineView::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_defined_engine_view.html#a7bcf169ba1e12e3356d4bcc27c3fc554',1,'gridfire::DefinedEngineView::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a14b0c7ec882b2ad2370f7aa729b9f9',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesDestructionTimescales()'],['../class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3',1,'PyDynamicEngine::getSpeciesDestructionTimescales()']]],
+  ['getspeciesindex_36',['getSpeciesIndex',['../classgridfire_1_1_dynamic_engine.html#a8f66fb76c9f983ee93bf8b95cdc85596',1,'gridfire::DynamicEngine::getSpeciesIndex()'],['../classgridfire_1_1_graph_engine.html#a9e426e6c178dd80bd58090489d3b2be9',1,'gridfire::GraphEngine::getSpeciesIndex()'],['../classgridfire_1_1_adaptive_engine_view.html#abb811382522c31f6456787edd4f59ace',1,'gridfire::AdaptiveEngineView::getSpeciesIndex()'],['../classgridfire_1_1_defined_engine_view.html#af3b355ffcda6a8f2841184cc56e3761a',1,'gridfire::DefinedEngineView::getSpeciesIndex()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a8db21995e6878f4043f3a5a45bf36d5e',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesIndex()'],['../class_py_dynamic_engine.html#a95d10a7b240d543a1bc6c67ddf2dc8e0',1,'PyDynamicEngine::getSpeciesIndex()']]],
+  ['getspeciestimescales_37',['GetSpeciesTimescales',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['getspeciestimescales_38',['getSpeciesTimescales',['../classgridfire_1_1_dynamic_engine.html#ae7114f5ebc6667b5e5971c0450ed03d9',1,'gridfire::DynamicEngine::getSpeciesTimescales()'],['../classgridfire_1_1_graph_engine.html#a7dde968244f3c4934c7738445c709232',1,'gridfire::GraphEngine::getSpeciesTimescales()'],['../classgridfire_1_1_adaptive_engine_view.html#a57a218c5a145f589531777c8615b7408',1,'gridfire::AdaptiveEngineView::getSpeciesTimescales()'],['../classgridfire_1_1_defined_engine_view.html#a18f46d92ea7e04068ad9e7af4ed605a8',1,'gridfire::DefinedEngineView::getSpeciesTimescales()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aea2c3d2ae6ddf77bd4a9b07b86f3306b',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesTimescales()'],['../class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22',1,'PyDynamicEngine::getSpeciesTimescales()']]],
+  ['getstate_39',['getState',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5',1,'gridfire::exceptions::StaleEngineTrigger']]],
+  ['getstoichiometrymatrixentry_40',['getStoichiometryMatrixEntry',['../classgridfire_1_1_dynamic_engine.html#ad19c8451b6f624e2938f771cc067d5c1',1,'gridfire::DynamicEngine::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_graph_engine.html#ad90a2d770ebf098f0d6d5f5339961e95',1,'gridfire::GraphEngine::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_adaptive_engine_view.html#abe2ca6426e10cc6a10090eecf7098dbe',1,'gridfire::AdaptiveEngineView::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_defined_engine_view.html#af1843cfd2a95bfa46ab40d4c4de11ef9',1,'gridfire::DefinedEngineView::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7140384baaaa0bd05ca448a0d8fec471',1,'gridfire::MultiscalePartitioningEngineView::getStoichiometryMatrixEntry()'],['../class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83',1,'PyDynamicEngine::getStoichiometryMatrixEntry()']]],
+  ['getweakrateinterpolator_41',['getWeakRateInterpolator',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aefc75b3149bee2da878177279ad375da',1,'gridfire::rates::weak::WeakReaction']]],
+  ['good_20platforms_42',['Currently, known good platforms',['../index.html#autotoc_md10',1,'']]],
+  ['graphengine_43',['GraphEngine',['../classgridfire_1_1_graph_engine.html',1,'gridfire::GraphEngine'],['../classgridfire_1_1_graph_engine.html#a38aaafb1d9a6548bc8e8cb672417bbbe',1,'gridfire::GraphEngine::GraphEngine(const fourdst::composition::Composition &amp;composition, BuildDepthType=NetworkBuildDepth::Full)'],['../classgridfire_1_1_graph_engine.html#a3a03fbd767f495ca667f23789b07c293',1,'gridfire::GraphEngine::GraphEngine(const fourdst::composition::Composition &amp;composition, const partition::PartitionFunction &amp;partitionFunction, BuildDepthType buildDepth=NetworkBuildDepth::Full)'],['../classgridfire_1_1_graph_engine.html#a514cc6b5482d6a27902975da17b5e39e',1,'gridfire::GraphEngine::GraphEngine(const reaction::ReactionSet &amp;reactions)'],['../index.html#autotoc_md29',1,'GraphEngine']]],
+  ['graphengine_20configuration_20options_44',['GraphEngine Configuration Options',['../index.html#autotoc_md30',1,'']]],
+  ['graphengine_20example_45',['GraphEngine Example',['../engine_8h.html#GraphEngineExample',1,'']]],
+  ['graphengine_20initialization_46',['GraphEngine Initialization',['../index.html#autotoc_md47',1,'']]],
+  ['gridfire_47',['GridFire',['../index.html',1,'GridFire'],['../index.html#autotoc_md33',1,'Reaclib in GridFire']]],
+  ['gridfire_48',['gridfire',['../namespacegridfire.html',1,'']]],
+  ['gridfire_20python_20usage_20guide_49',['GridFire Python Usage Guide',['../md_docs_2static_2usage.html',1,'']]],
+  ['gridfire_3a_3aapprox8_50',['approx8',['../namespacegridfire_1_1approx8.html',1,'gridfire']]],
+  ['gridfire_3a_3adiagnostics_51',['diagnostics',['../namespacegridfire_1_1diagnostics.html',1,'gridfire']]],
+  ['gridfire_3a_3aexceptions_52',['exceptions',['../namespacegridfire_1_1exceptions.html',1,'gridfire']]],
+  ['gridfire_3a_3aexpectations_53',['expectations',['../namespacegridfire_1_1expectations.html',1,'gridfire']]],
+  ['gridfire_3a_3aio_54',['io',['../namespacegridfire_1_1io.html',1,'gridfire']]],
+  ['gridfire_3a_3apartition_55',['partition',['../namespacegridfire_1_1partition.html',1,'gridfire']]],
+  ['gridfire_3a_3apartition_3a_3arecord_56',['record',['../namespacegridfire_1_1partition_1_1record.html',1,'gridfire::partition']]],
+  ['gridfire_3a_3arates_57',['rates',['../namespacegridfire_1_1rates.html',1,'gridfire']]],
+  ['gridfire_3a_3arates_3a_3aweak_58',['weak',['../namespacegridfire_1_1rates_1_1weak.html',1,'gridfire::rates']]],
+  ['gridfire_3a_3areaclib_59',['reaclib',['../namespacegridfire_1_1reaclib.html',1,'gridfire']]],
+  ['gridfire_3a_3areaction_60',['reaction',['../namespacegridfire_1_1reaction.html',1,'gridfire']]],
+  ['gridfire_3a_3ascreening_61',['screening',['../namespacegridfire_1_1screening.html',1,'gridfire']]],
+  ['gridfire_3a_3asolver_62',['solver',['../namespacegridfire_1_1solver.html',1,'gridfire']]],
+  ['gridfire_3a_3atrigger_63',['trigger',['../namespacegridfire_1_1trigger.html',1,'gridfire']]],
+  ['gridfire_3a_3atrigger_3a_3asolver_64',['solver',['../namespacegridfire_1_1trigger_1_1solver.html',1,'gridfire::trigger']]],
+  ['gridfire_3a_3atrigger_3a_3asolver_3a_3acvode_65',['CVODE',['../namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html',1,'gridfire::trigger::solver']]],
+  ['gridfire_3a_3autils_66',['utils',['../namespacegridfire_1_1utils.html',1,'gridfire']]],
+  ['gridfire_5fweak_5freaction_5flib_5fsentinel_67',['GRIDFIRE_WEAK_REACTION_LIB_SENTINEL',['../weak_8h.html#a56d76d6c9aef1e09f707c836a157ff27',1,'weak.h']]],
+  ['ground_5fstate_5fspin_68',['ground_state_spin',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aec714697f3f5102124561252233fc350',1,'gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData::ground_state_spin'],['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#acf5c38826050594aee98d746d0ba40b2',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord::ground_state_spin']]],
+  ['groundstate_69',['GroundState',['../namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335',1,'gridfire::partition']]],
+  ['groundstatepartitionfunction_70',['GroundStatePartitionFunction',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html',1,'gridfire::partition::GroundStatePartitionFunction'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a8afa2aee993eb3ed8d01c887d39b57eb',1,'gridfire::partition::GroundStatePartitionFunction::GroundStatePartitionFunction()']]],
+  ['gt_20_3a_71',['NetworkSolverStrategy&amp;lt;EngineT&amp;gt;:',['../index.html#autotoc_md37',1,'']]],
+  ['guide_72',['GridFire Python Usage Guide',['../md_docs_2static_2usage.html',1,'']]]
 ];
diff --git a/docs/html/search/all_d.js b/docs/html/search/all_d.js
index 9f40d7b7..477d63d1 100644
--- a/docs/html/search/all_d.js
+++ b/docs/html/search/all_d.js
@@ -1,12 +1,11 @@
 var searchData=
 [
-  ['hash_0',['hash',['../structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d',1,'gridfire::QSECacheKey::hash()'],['../classgridfire_1_1reaction_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5',1,'gridfire::reaction::Reaction::hash()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a272800016c83f259f5c6a92dc797353c',1,'gridfire::reaction::TemplatedReactionSet::hash()'],['../classgridfire_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5',1,'gridfire::Reaction::hash()']]],
+  ['hash_0',['hash',['../structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d',1,'gridfire::QSECacheKey::hash()'],['../classgridfire_1_1reaction_1_1_reaction.html#a7ba8c18cd5445aa3499a6fd351183f7a',1,'gridfire::reaction::Reaction::hash()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a661dd461e51c37133f7f9931389fd3cc',1,'gridfire::reaction::ReaclibReaction::hash()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99',1,'gridfire::reaction::ReactionSet::hash()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad2ba6b584cb2df7c15633fca81ce6af1',1,'gridfire::rates::weak::WeakReaction::hash()'],['../classgridfire_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99',1,'gridfire::ReactionSet::hash()'],['../classgridfire_1_1_reaction.html#a41b1c16f499c9255251ed43725cf698c',1,'gridfire::Reaction::hash()']]],
   ['hash_3c_20gridfire_3a_3aqsecachekey_20_3e_1',['hash&lt; gridfire::QSECacheKey &gt;',['../structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html',1,'std']]],
-  ['hash_3c_20gridfire_3a_3areaction_3a_3alogicalreactionset_20_3e_2',['hash&lt; gridfire::reaction::LogicalReactionSet &gt;',['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html',1,'std']]],
-  ['hash_3c_20gridfire_3a_3areaction_3a_3areaction_20_3e_3',['hash&lt; gridfire::reaction::Reaction &gt;',['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html',1,'std']]],
-  ['hash_3c_20gridfire_3a_3areaction_3a_3areactionset_20_3e_4',['hash&lt; gridfire::reaction::ReactionSet &gt;',['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html',1,'std']]],
-  ['he3he3_5frate_5',['he3he3_rate',['../namespacegridfire_1_1approx8.html#a12cb71ba6ed03750af9e7659464197ea',1,'gridfire::approx8']]],
-  ['he3he4_5frate_6',['he3he4_rate',['../namespacegridfire_1_1approx8.html#a593cd66c1eadae4da233ae73b4aad4a3',1,'gridfire::approx8']]],
-  ['hit_7',['hit',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5eb642e161ffb5500ccc1e412849ee5e',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['hits_8',['hits',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#aaf8b925a169a732c14f4451a33451f51',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]]
+  ['hash_3c_20gridfire_3a_3areaction_3a_3areaction_20_3e_2',['hash&lt; gridfire::reaction::Reaction &gt;',['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html',1,'std']]],
+  ['hash_3c_20gridfire_3a_3areaction_3a_3areactionset_20_3e_3',['hash&lt; gridfire::reaction::ReactionSet &gt;',['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html',1,'std']]],
+  ['he3he3_5frate_4',['he3he3_rate',['../namespacegridfire_1_1approx8.html#a12cb71ba6ed03750af9e7659464197ea',1,'gridfire::approx8']]],
+  ['he3he4_5frate_5',['he3he4_rate',['../namespacegridfire_1_1approx8.html#a593cd66c1eadae4da233ae73b4aad4a3',1,'gridfire::approx8']]],
+  ['hit_6',['hit',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5eb642e161ffb5500ccc1e412849ee5e',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['hits_7',['hits',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#aaf8b925a169a732c14f4451a33451f51',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]]
 ];
diff --git a/docs/html/search/all_e.js b/docs/html/search/all_e.js
index efa7e48b..784da5e7 100644
--- a/docs/html/search/all_e.js
+++ b/docs/html/search/all_e.js
@@ -1,10 +1,10 @@
 var searchData=
 [
   ['ic12_0',['ic12',['../structgridfire_1_1approx8_1_1_approx8_net.html#a95b9a07e29285884e6de523f8132f653',1,'gridfire::approx8::Approx8Net']]],
-  ['id_1',['id',['../classgridfire_1_1reaction_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905',1,'gridfire::reaction::Reaction::id()'],['../classgridfire_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905',1,'gridfire::Reaction::id()']]],
+  ['id_1',['id',['../classgridfire_1_1reaction_1_1_reaction.html#a94b92308b9619ec20c690e55157786ba',1,'gridfire::reaction::Reaction::id()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a06312f834439ccf93012dea53cab47ce',1,'gridfire::reaction::ReaclibReaction::id()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad01a15d95878c9edbf57cd9045c4413b',1,'gridfire::rates::weak::WeakReaction::id()'],['../classgridfire_1_1_reaction.html#a768329002a4f0b8604b1aa51d56b5d1b',1,'gridfire::Reaction::id()']]],
   ['idensity_2',['iDensity',['../structgridfire_1_1approx8_1_1_approx8_net.html#a562c2383f585d3e9984225584d61c037',1,'gridfire::approx8::Approx8Net']]],
   ['identifiedisotope_3',['IdentifiedIsotope',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
-  ['identifymeanslowestpool_4',['identifyMeanSlowestPool',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a54ca8004fbd8d6d3ea6f67efeb5dbc8d',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['identifymeanslowestpool_4',['identifyMeanSlowestPool',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a70f4a0c4123b7f78305f64eb11beeeeb',1,'gridfire::MultiscalePartitioningEngineView']]],
   ['ienergy_5',['iEnergy',['../structgridfire_1_1approx8_1_1_approx8_net.html#a18501627dceb5d084bc7ba19f119826f',1,'gridfire::approx8::Approx8Net']]],
   ['ih1_6',['ih1',['../structgridfire_1_1approx8_1_1_approx8_net.html#acc735a17e005f7e25c68a86d9735ec4c',1,'gridfire::approx8::Approx8Net']]],
   ['ihe3_7',['ihe3',['../structgridfire_1_1approx8_1_1_approx8_net.html#ab0a43fee658efcaacfe7e6fb4870569b',1,'gridfire::approx8::Approx8Net']]],
@@ -18,30 +18,38 @@ var searchData=
   ['index_15',['INDEX',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87cacb4ae3b37047fb4b2c0d16f8bf84f076',1,'gridfire::expectations']]],
   ['ine20_16',['ine20',['../structgridfire_1_1approx8_1_1_approx8_net.html#ad43418fd8c536ebc814d5e6de555256c',1,'gridfire::approx8::Approx8Net']]],
   ['initialization_17',['Initialization',['../index.html#autotoc_md49',1,'Composition Initialization'],['../index.html#autotoc_md47',1,'GraphEngine Initialization']]],
-  ['initializeallreaclibreactions_18',['initializeAllReaclibReactions',['../namespacegridfire_1_1reaclib.html#a02ff11b88be94392151873e06a30b276',1,'gridfire::reaclib']]],
-  ['inputs_19',['inputs',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a0adf1074b5e6ba448cedff7563c450d0',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
-  ['inputsatcompiletime_20',['InputsAtCompileTime',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a753b594931f9ee122e2079986ad572c9',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
-  ['inputtype_21',['InputType',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3ebf684b36e98da38d8ee6f0be4f91e2',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
-  ['install_20scripts_22',['Install Scripts',['../index.html#autotoc_md15',1,'']]],
-  ['installation_23',['Installation',['../md_docs_2static_2usage.html#autotoc_md60',1,'1. Installation'],['../index.html#autotoc_md8',1,'Automatic Build and Installation'],['../index.html#autotoc_md16',1,'Ease of Installation']]],
-  ['installation_24',['Python installation',['../index.html#autotoc_md4',1,'']]],
-  ['installation_20instructions_25',['Script Build and Installation Instructions',['../index.html#autotoc_md9',1,'']]],
-  ['installation_20on_20common_20platforms_26',['Dependency Installation on Common Platforms',['../index.html#autotoc_md22',1,'']]],
-  ['installing_20the_20library_27',['Installing the Library',['../index.html#autotoc_md25',1,'']]],
-  ['instructions_28',['Instructions',['../index.html#autotoc_md11',1,'Manual Build Instructions'],['../index.html#autotoc_md9',1,'Script Build and Installation Instructions']]],
-  ['interpolationpoints_29',['InterpolationPoints',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
-  ['introduction_30',['Introduction',['../index.html#autotoc_md0',1,'']]],
-  ['involvesspecies_31',['involvesSpecies',['../classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b',1,'gridfire::GraphEngine']]],
-  ['io_2eh_32',['io.h',['../io_8h.html',1,'']]],
-  ['io16_33',['io16',['../structgridfire_1_1approx8_1_1_approx8_net.html#ab4e95622dc0414ad7e636ef811e600af',1,'gridfire::approx8::Approx8Net']]],
-  ['is_5fin_5fequilibrium_34',['is_in_equilibrium',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
-  ['is_5freverse_35',['is_reverse',['../classgridfire_1_1reaction_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba',1,'gridfire::reaction::Reaction::is_reverse()'],['../classgridfire_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba',1,'gridfire::Reaction::is_reverse()']]],
-  ['isarithmeticorad_36',['IsArithmeticOrAD',['../conceptgridfire_1_1_is_arithmetic_or_a_d.html',1,'gridfire']]],
-  ['isdynamicengine_37',['IsDynamicEngine',['../concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html',1,'@012022023301355052304263320136165002200160012126']]],
-  ['isotopedata_38',['IsotopeData',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
-  ['isprecomputationenabled_39',['isPrecomputationEnabled',['../classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f',1,'gridfire::GraphEngine']]],
-  ['isstale_40',['isStale',['../classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398',1,'gridfire::DynamicEngine::isStale()'],['../classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5',1,'gridfire::GraphEngine::isStale()'],['../classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88',1,'gridfire::AdaptiveEngineView::isStale()'],['../classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87',1,'gridfire::DefinedEngineView::isStale()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46',1,'gridfire::MultiscalePartitioningEngineView::isStale()'],['../class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14',1,'PyDynamicEngine::isStale()']]],
-  ['isstiff_41',['isStiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#a5b17b2831389829533385900ce19a37a',1,'gridfire::approx8::Approx8Network::isStiff()'],['../classgridfire_1_1_network.html#ae93ad65deba79def4b77d420e7affa0b',1,'gridfire::Network::isStiff()']]],
-  ['isusingreversereactions_42',['isUsingReverseReactions',['../classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0',1,'gridfire::GraphEngine']]],
-  ['itemp_43',['iTemp',['../structgridfire_1_1approx8_1_1_approx8_net.html#a010df59d40b3bc8a802224968922ebde',1,'gridfire::approx8::Approx8Net']]]
+  ['initialize_5fcvode_5fintegration_5fresources_18',['initialize_cvode_integration_resources',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afc6c55237df4af240c4c842305085d91',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['initializeallreaclibreactions_19',['initializeAllReaclibReactions',['../namespacegridfire_1_1reaclib.html#a02ff11b88be94392151873e06a30b276',1,'gridfire::reaclib']]],
+  ['inputs_20',['inputs',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad19c39ced17e400af9f46478546a8fa1',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['inputsatcompiletime_21',['InputsAtCompileTime',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a753b594931f9ee122e2079986ad572c9',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['inputtype_22',['InputType',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3ebf684b36e98da38d8ee6f0be4f91e2',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['inspect_5fjacobian_5fstiffness_23',['inspect_jacobian_stiffness',['../namespacegridfire_1_1diagnostics.html#a066ee899bd259062716f25abae3890b0',1,'gridfire::diagnostics']]],
+  ['inspect_5fspecies_5fbalance_24',['inspect_species_balance',['../namespacegridfire_1_1diagnostics.html#a11c0d538e7244bee168d7f9217442128',1,'gridfire::diagnostics']]],
+  ['install_20scripts_25',['Install Scripts',['../index.html#autotoc_md15',1,'']]],
+  ['installation_26',['Installation',['../md_docs_2static_2usage.html#autotoc_md60',1,'1. Installation'],['../index.html#autotoc_md8',1,'Automatic Build and Installation'],['../index.html#autotoc_md16',1,'Ease of Installation']]],
+  ['installation_27',['Python installation',['../index.html#autotoc_md4',1,'']]],
+  ['installation_20instructions_28',['Script Build and Installation Instructions',['../index.html#autotoc_md9',1,'']]],
+  ['installation_20on_20common_20platforms_29',['Dependency Installation on Common Platforms',['../index.html#autotoc_md22',1,'']]],
+  ['installing_20the_20library_30',['Installing the Library',['../index.html#autotoc_md25',1,'']]],
+  ['instructions_31',['Instructions',['../index.html#autotoc_md11',1,'Manual Build Instructions'],['../index.html#autotoc_md9',1,'Script Build and Installation Instructions']]],
+  ['intermediatescreeningmodel_32',['IntermediateScreeningModel',['../classgridfire_1_1screening_1_1_intermediate_screening_model.html',1,'gridfire::screening']]],
+  ['interpolationerror_33',['InterpolationError',['../structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html',1,'gridfire::rates::weak']]],
+  ['interpolationerrortype_34',['InterpolationErrorType',['../namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4',1,'gridfire::rates::weak']]],
+  ['interpolationerrortypemap_35',['InterpolationErrorTypeMap',['../namespacegridfire_1_1rates_1_1weak.html#a7a262a98e1956c33645bad4eb4e40c7a',1,'gridfire::rates::weak']]],
+  ['interpolationpoints_36',['InterpolationPoints',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+  ['introduction_37',['Introduction',['../index.html#autotoc_md0',1,'']]],
+  ['involvesspecies_38',['involvesSpecies',['../classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b',1,'gridfire::GraphEngine']]],
+  ['io_2eh_39',['io.h',['../io_8h.html',1,'']]],
+  ['io16_40',['io16',['../structgridfire_1_1approx8_1_1_approx8_net.html#ab4e95622dc0414ad7e636ef811e600af',1,'gridfire::approx8::Approx8Net']]],
+  ['is_5fin_5fequilibrium_41',['is_in_equilibrium',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+  ['is_5freverse_42',['is_reverse',['../classgridfire_1_1reaction_1_1_reaction.html#a3906a668410e02239f9031b5fc580214',1,'gridfire::reaction::Reaction::is_reverse()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a181b2c75af1f2701c43594c5bb2bac2d',1,'gridfire::reaction::ReaclibReaction::is_reverse()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90b62d922d91832859516450cf8e3876',1,'gridfire::rates::weak::WeakReaction::is_reverse()'],['../classgridfire_1_1_reaction.html#a640b0bdbed9ed7c2a2e9880ddbcafc1d',1,'gridfire::Reaction::is_reverse()']]],
+  ['isarithmeticorad_43',['IsArithmeticOrAD',['../conceptgridfire_1_1_is_arithmetic_or_a_d.html',1,'gridfire']]],
+  ['isdynamicengine_44',['IsDynamicEngine',['../concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html',1,'@012022023301355052304263320136165002200160012126']]],
+  ['isotopedata_45',['IsotopeData',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+  ['isotopegrid_46',['IsotopeGrid',['../structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html',1,'gridfire::rates::weak']]],
+  ['isprecomputationenabled_47',['isPrecomputationEnabled',['../classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f',1,'gridfire::GraphEngine']]],
+  ['isstale_48',['isStale',['../classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398',1,'gridfire::DynamicEngine::isStale()'],['../classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5',1,'gridfire::GraphEngine::isStale()'],['../classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88',1,'gridfire::AdaptiveEngineView::isStale()'],['../classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87',1,'gridfire::DefinedEngineView::isStale()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46',1,'gridfire::MultiscalePartitioningEngineView::isStale()'],['../class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14',1,'PyDynamicEngine::isStale()']]],
+  ['isstiff_49',['isStiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#a5b17b2831389829533385900ce19a37a',1,'gridfire::approx8::Approx8Network::isStiff()'],['../classgridfire_1_1_network.html#ae93ad65deba79def4b77d420e7affa0b',1,'gridfire::Network::isStiff()']]],
+  ['isusingreversereactions_50',['isUsingReverseReactions',['../classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0',1,'gridfire::GraphEngine']]],
+  ['itemp_51',['iTemp',['../structgridfire_1_1approx8_1_1_approx8_net.html#a010df59d40b3bc8a802224968922ebde',1,'gridfire::approx8::Approx8Net']]]
 ];
diff --git a/docs/html/search/all_f.js b/docs/html/search/all_f.js
index 327fc316..d62dcfd5 100644
--- a/docs/html/search/all_f.js
+++ b/docs/html/search/all_f.js
@@ -1,6 +1,5 @@
 var searchData=
 [
   ['jacobian_0',['Jacobian',['../structgridfire_1_1approx8_1_1_jacobian.html',1,'gridfire::approx8']]],
-  ['jacobianfunctor_1',['JacobianFunctor',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::JacobianFunctor()']]],
-  ['jacobiantype_2',['JacobianType',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7353c20a6eac2ac0d9d13791577080d',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]]
+  ['jacobiantype_1',['JacobianType',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7353c20a6eac2ac0d9d13791577080d',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]]
 ];
diff --git a/docs/html/search/classes_0.js b/docs/html/search/classes_0.js
index c53df56a..9ad002dc 100644
--- a/docs/html/search/classes_0.js
+++ b/docs/html/search/classes_0.js
@@ -1,7 +1,9 @@
 var searchData=
 [
   ['adaptiveengineview_0',['AdaptiveEngineView',['../classgridfire_1_1_adaptive_engine_view.html',1,'gridfire']]],
-  ['approx8net_1',['Approx8Net',['../structgridfire_1_1approx8_1_1_approx8_net.html',1,'gridfire::approx8']]],
-  ['approx8network_2',['Approx8Network',['../classgridfire_1_1approx8_1_1_approx8_network.html',1,'gridfire::approx8']]],
-  ['atomicreverserate_3',['AtomicReverseRate',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html',1,'gridfire::GraphEngine']]]
+  ['andtrigger_1',['AndTrigger',['../classgridfire_1_1trigger_1_1_and_trigger.html',1,'gridfire::trigger']]],
+  ['approx8net_2',['Approx8Net',['../structgridfire_1_1approx8_1_1_approx8_net.html',1,'gridfire::approx8']]],
+  ['approx8network_3',['Approx8Network',['../classgridfire_1_1approx8_1_1_approx8_network.html',1,'gridfire::approx8']]],
+  ['atomicreverserate_4',['AtomicReverseRate',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html',1,'gridfire::GraphEngine']]],
+  ['atomicweakrate_5',['AtomicWeakRate',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html',1,'gridfire::rates::weak::WeakReaction']]]
 ];
diff --git a/docs/html/search/classes_1.js b/docs/html/search/classes_1.js
index ba6e3c9a..34a121af 100644
--- a/docs/html/search/classes_1.js
+++ b/docs/html/search/classes_1.js
@@ -1,4 +1,5 @@
 var searchData=
 [
-  ['barescreeningmodel_0',['BareScreeningModel',['../classgridfire_1_1screening_1_1_bare_screening_model.html',1,'gridfire::screening']]]
+  ['barescreeningmodel_0',['BareScreeningModel',['../classgridfire_1_1screening_1_1_bare_screening_model.html',1,'gridfire::screening']]],
+  ['boundserrorinfo_1',['BoundsErrorInfo',['../structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html',1,'gridfire::rates::weak']]]
 ];
diff --git a/docs/html/search/classes_10.js b/docs/html/search/classes_10.js
index ddb5b8a5..c6b7591c 100644
--- a/docs/html/search/classes_10.js
+++ b/docs/html/search/classes_10.js
@@ -1,10 +1,12 @@
 var searchData=
 [
   ['ratecoefficientset_0',['RateCoefficientSet',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html',1,'gridfire::reaction']]],
-  ['rauscherthielemannpartitiondatarecord_1',['RauscherThielemannPartitionDataRecord',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html',1,'gridfire::partition::record']]],
-  ['rauscherthielemannpartitionfunction_2',['RauscherThielemannPartitionFunction',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html',1,'gridfire::partition']]],
-  ['reaction_3',['Reaction',['../classgridfire_1_1_reaction.html',1,'gridfire::Reaction'],['../classgridfire_1_1reaction_1_1_reaction.html',1,'gridfire::reaction::Reaction']]],
-  ['reactionflow_4',['ReactionFlow',['../structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html',1,'gridfire::AdaptiveEngineView']]],
-  ['reactionrecord_5',['ReactionRecord',['../structgridfire_1_1reaclib_1_1_reaction_record.html',1,'gridfire::reaclib']]],
-  ['rhsmanager_6',['RHSManager',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html',1,'gridfire::solver::DirectNetworkSolver']]]
+  ['ratedatarow_1',['RateDataRow',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html',1,'gridfire::rates::weak']]],
+  ['rauscherthielemannpartitiondatarecord_2',['RauscherThielemannPartitionDataRecord',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html',1,'gridfire::partition::record']]],
+  ['rauscherthielemannpartitionfunction_3',['RauscherThielemannPartitionFunction',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html',1,'gridfire::partition']]],
+  ['reaclibreaction_4',['ReaclibReaction',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html',1,'gridfire::reaction']]],
+  ['reaction_5',['Reaction',['../classgridfire_1_1_reaction.html',1,'gridfire::Reaction'],['../classgridfire_1_1reaction_1_1_reaction.html',1,'gridfire::reaction::Reaction']]],
+  ['reactionflow_6',['ReactionFlow',['../structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html',1,'gridfire::AdaptiveEngineView']]],
+  ['reactionrecord_7',['ReactionRecord',['../structgridfire_1_1reaclib_1_1_reaction_record.html',1,'gridfire::reaclib']]],
+  ['reactionset_8',['ReactionSet',['../classgridfire_1_1reaction_1_1_reaction_set.html',1,'gridfire::reaction::ReactionSet'],['../classgridfire_1_1_reaction_set.html',1,'gridfire::ReactionSet']]]
 ];
diff --git a/docs/html/search/classes_11.js b/docs/html/search/classes_11.js
index 11b7c9de..083a8e4e 100644
--- a/docs/html/search/classes_11.js
+++ b/docs/html/search/classes_11.js
@@ -2,9 +2,11 @@ var searchData=
 [
   ['screeningmodel_0',['ScreeningModel',['../classgridfire_1_1screening_1_1_screening_model.html',1,'gridfire::screening']]],
   ['simplereactionlistfileparser_1',['SimpleReactionListFileParser',['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html',1,'gridfire::io']]],
-  ['solvercontextbase_2',['SolverContextBase',['../structgridfire_1_1solver_1_1_solver_context_base.html',1,'gridfire::solver']]],
-  ['staleengineerror_3',['StaleEngineError',['../classgridfire_1_1exceptions_1_1_stale_engine_error.html',1,'gridfire::exceptions::StaleEngineError'],['../structgridfire_1_1expectations_1_1_stale_engine_error.html',1,'gridfire::expectations::StaleEngineError']]],
-  ['staleenginetrigger_4',['StaleEngineTrigger',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html',1,'gridfire::exceptions']]],
-  ['state_5',['state',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html',1,'gridfire::exceptions::StaleEngineTrigger']]],
-  ['stepderivatives_6',['StepDerivatives',['../structgridfire_1_1_step_derivatives.html',1,'gridfire']]]
+  ['simulationtimetrigger_2',['SimulationTimeTrigger',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html',1,'gridfire::trigger::solver::CVODE']]],
+  ['solvercontextbase_3',['SolverContextBase',['../structgridfire_1_1solver_1_1_solver_context_base.html',1,'gridfire::solver']]],
+  ['solverplugininterface_4',['SolverPluginInterface',['../class_solver_plugin_interface.html',1,'']]],
+  ['staleengineerror_5',['StaleEngineError',['../classgridfire_1_1exceptions_1_1_stale_engine_error.html',1,'gridfire::exceptions::StaleEngineError'],['../structgridfire_1_1expectations_1_1_stale_engine_error.html',1,'gridfire::expectations::StaleEngineError']]],
+  ['staleenginetrigger_6',['StaleEngineTrigger',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html',1,'gridfire::exceptions']]],
+  ['state_7',['state',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html',1,'gridfire::exceptions::StaleEngineTrigger']]],
+  ['stepderivatives_8',['StepDerivatives',['../structgridfire_1_1_step_derivatives.html',1,'gridfire']]]
 ];
diff --git a/docs/html/search/classes_12.js b/docs/html/search/classes_12.js
index ba03700a..5a68c91b 100644
--- a/docs/html/search/classes_12.js
+++ b/docs/html/search/classes_12.js
@@ -1,7 +1,8 @@
 var searchData=
 [
-  ['templatedreactionset_0',['TemplatedReactionSet',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html',1,'gridfire::reaction']]],
-  ['templatedreactionset_3c_20logicalreaction_20_3e_1',['TemplatedReactionSet&lt; LogicalReaction &gt;',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html',1,'gridfire::reaction']]],
-  ['templatedreactionset_3c_20reaction_20_3e_2',['TemplatedReactionSet&lt; Reaction &gt;',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html',1,'gridfire::reaction']]],
-  ['timestepcontext_3',['TimestepContext',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html',1,'gridfire::solver::DirectNetworkSolver']]]
+  ['timestepcollapsetrigger_0',['TimestepCollapseTrigger',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html',1,'gridfire::trigger::solver::CVODE']]],
+  ['timestepcontext_1',['TimestepContext',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['trigger_2',['Trigger',['../classgridfire_1_1trigger_1_1_trigger.html',1,'gridfire::trigger']]],
+  ['trigger_3c_20gridfire_3a_3asolver_3a_3acvodesolverstrategy_3a_3atimestepcontext_20_3e_3',['Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;',['../classgridfire_1_1trigger_1_1_trigger.html',1,'gridfire::trigger']]],
+  ['triggerresult_4',['TriggerResult',['../structgridfire_1_1trigger_1_1_trigger_result.html',1,'gridfire::trigger']]]
 ];
diff --git a/docs/html/search/classes_14.js b/docs/html/search/classes_14.js
index 1dd77162..bd15ca4b 100644
--- a/docs/html/search/classes_14.js
+++ b/docs/html/search/classes_14.js
@@ -1,4 +1,10 @@
 var searchData=
 [
-  ['weakscreeningmodel_0',['WeakScreeningModel',['../classgridfire_1_1screening_1_1_weak_screening_model.html',1,'gridfire::screening']]]
+  ['weakratederivatives_0',['WeakRateDerivatives',['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html',1,'gridfire::rates::weak']]],
+  ['weakrateinterpolator_1',['WeakRateInterpolator',['../classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html',1,'gridfire::rates::weak']]],
+  ['weakratepayload_2',['WeakRatePayload',['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html',1,'gridfire::rates::weak']]],
+  ['weakreaction_3',['WeakReaction',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html',1,'gridfire::rates::weak']]],
+  ['weakreactionentry_4',['WeakReactionEntry',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html',1,'gridfire::rates::weak']]],
+  ['weakreactionmap_5',['WeakReactionMap',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html',1,'gridfire::rates::weak']]],
+  ['weakscreeningmodel_6',['WeakScreeningModel',['../classgridfire_1_1screening_1_1_weak_screening_model.html',1,'gridfire::screening']]]
 ];
diff --git a/docs/html/search/classes_2.js b/docs/html/search/classes_2.js
index 751bb6f2..b13b9fd8 100644
--- a/docs/html/search/classes_2.js
+++ b/docs/html/search/classes_2.js
@@ -1,6 +1,10 @@
 var searchData=
 [
   ['cachestats_0',['CacheStats',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['compositepartitionfunction_1',['CompositePartitionFunction',['../classgridfire_1_1partition_1_1_composite_partition_function.html',1,'gridfire::partition']]],
-  ['constants_2',['constants',['../structgridfire_1_1_graph_engine_1_1constants.html',1,'gridfire::GraphEngine']]]
+  ['column_1',['Column',['../classgridfire_1_1utils_1_1_column.html',1,'gridfire::utils']]],
+  ['columnbase_2',['ColumnBase',['../classgridfire_1_1utils_1_1_column_base.html',1,'gridfire::utils']]],
+  ['compositepartitionfunction_3',['CompositePartitionFunction',['../classgridfire_1_1partition_1_1_composite_partition_function.html',1,'gridfire::partition']]],
+  ['constants_4',['constants',['../structgridfire_1_1_graph_engine_1_1constants.html',1,'gridfire::GraphEngine::constants'],['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['cvodesolverstrategy_5',['CVODESolverStrategy',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html',1,'gridfire::solver']]],
+  ['cvodeuserdata_6',['CVODEUserData',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html',1,'gridfire::solver::CVODESolverStrategy']]]
 ];
diff --git a/docs/html/search/classes_3.js b/docs/html/search/classes_3.js
index 9e59adaf..1c9511c4 100644
--- a/docs/html/search/classes_3.js
+++ b/docs/html/search/classes_3.js
@@ -1,6 +1,5 @@
 var searchData=
 [
   ['definedengineview_0',['DefinedEngineView',['../classgridfire_1_1_defined_engine_view.html',1,'gridfire']]],
-  ['directnetworksolver_1',['DirectNetworkSolver',['../classgridfire_1_1solver_1_1_direct_network_solver.html',1,'gridfire::solver']]],
-  ['dynamicengine_2',['DynamicEngine',['../classgridfire_1_1_dynamic_engine.html',1,'gridfire']]]
+  ['dynamicengine_1',['DynamicEngine',['../classgridfire_1_1_dynamic_engine.html',1,'gridfire']]]
 ];
diff --git a/docs/html/search/classes_4.js b/docs/html/search/classes_4.js
index 98231a89..bbaf0471 100644
--- a/docs/html/search/classes_4.js
+++ b/docs/html/search/classes_4.js
@@ -1,11 +1,13 @@
 var searchData=
 [
   ['eigenfunctor_0',['EigenFunctor',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['engine_1',['Engine',['../classgridfire_1_1_engine.html',1,'gridfire']]],
-  ['engineerror_2',['EngineError',['../classgridfire_1_1exceptions_1_1_engine_error.html',1,'gridfire::exceptions::EngineError'],['../structgridfire_1_1expectations_1_1_engine_error.html',1,'gridfire::expectations::EngineError']]],
-  ['engineindexerror_3',['EngineIndexError',['../structgridfire_1_1expectations_1_1_engine_index_error.html',1,'gridfire::expectations']]],
-  ['engineview_4',['EngineView',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
-  ['engineview_3c_20dynamicengine_20_3e_5',['EngineView&lt; DynamicEngine &gt;',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
-  ['engineview_3c_20gridfire_3a_3adynamicengine_20_3e_6',['EngineView&lt; gridfire::DynamicEngine &gt;',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
-  ['engineview_3c_20gridfire_3a_3aengine_20_3e_7',['EngineView&lt; gridfire::Engine &gt;',['../classgridfire_1_1_engine_view.html',1,'gridfire']]]
+  ['energyderivatives_1',['EnergyDerivatives',['../structgridfire_1_1_energy_derivatives.html',1,'gridfire']]],
+  ['engine_2',['Engine',['../classgridfire_1_1_engine.html',1,'gridfire']]],
+  ['engineerror_3',['EngineError',['../classgridfire_1_1exceptions_1_1_engine_error.html',1,'gridfire::exceptions::EngineError'],['../structgridfire_1_1expectations_1_1_engine_error.html',1,'gridfire::expectations::EngineError']]],
+  ['engineindexerror_4',['EngineIndexError',['../structgridfire_1_1expectations_1_1_engine_index_error.html',1,'gridfire::expectations']]],
+  ['engineview_5',['EngineView',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
+  ['engineview_3c_20dynamicengine_20_3e_6',['EngineView&lt; DynamicEngine &gt;',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
+  ['engineview_3c_20gridfire_3a_3adynamicengine_20_3e_7',['EngineView&lt; gridfire::DynamicEngine &gt;',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
+  ['engineview_3c_20gridfire_3a_3aengine_20_3e_8',['EngineView&lt; gridfire::Engine &gt;',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
+  ['everynthtrigger_9',['EveryNthTrigger',['../classgridfire_1_1trigger_1_1_every_nth_trigger.html',1,'gridfire::trigger']]]
 ];
diff --git a/docs/html/search/classes_7.js b/docs/html/search/classes_7.js
index e3a9ad51..4135feb9 100644
--- a/docs/html/search/classes_7.js
+++ b/docs/html/search/classes_7.js
@@ -1,7 +1,6 @@
 var searchData=
 [
   ['hash_3c_20gridfire_3a_3aqsecachekey_20_3e_0',['hash&lt; gridfire::QSECacheKey &gt;',['../structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html',1,'std']]],
-  ['hash_3c_20gridfire_3a_3areaction_3a_3alogicalreactionset_20_3e_1',['hash&lt; gridfire::reaction::LogicalReactionSet &gt;',['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html',1,'std']]],
-  ['hash_3c_20gridfire_3a_3areaction_3a_3areaction_20_3e_2',['hash&lt; gridfire::reaction::Reaction &gt;',['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html',1,'std']]],
-  ['hash_3c_20gridfire_3a_3areaction_3a_3areactionset_20_3e_3',['hash&lt; gridfire::reaction::ReactionSet &gt;',['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html',1,'std']]]
+  ['hash_3c_20gridfire_3a_3areaction_3a_3areaction_20_3e_1',['hash&lt; gridfire::reaction::Reaction &gt;',['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html',1,'std']]],
+  ['hash_3c_20gridfire_3a_3areaction_3a_3areactionset_20_3e_2',['hash&lt; gridfire::reaction::ReactionSet &gt;',['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html',1,'std']]]
 ];
diff --git a/docs/html/search/classes_8.js b/docs/html/search/classes_8.js
index 3e2fb545..86066e89 100644
--- a/docs/html/search/classes_8.js
+++ b/docs/html/search/classes_8.js
@@ -1,6 +1,9 @@
 var searchData=
 [
   ['identifiedisotope_0',['IdentifiedIsotope',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
-  ['interpolationpoints_1',['InterpolationPoints',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
-  ['isotopedata_2',['IsotopeData',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html',1,'gridfire::partition::RauscherThielemannPartitionFunction']]]
+  ['intermediatescreeningmodel_1',['IntermediateScreeningModel',['../classgridfire_1_1screening_1_1_intermediate_screening_model.html',1,'gridfire::screening']]],
+  ['interpolationerror_2',['InterpolationError',['../structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html',1,'gridfire::rates::weak']]],
+  ['interpolationpoints_3',['InterpolationPoints',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+  ['isotopedata_4',['IsotopeData',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+  ['isotopegrid_5',['IsotopeGrid',['../structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html',1,'gridfire::rates::weak']]]
 ];
diff --git a/docs/html/search/classes_9.js b/docs/html/search/classes_9.js
index 0facfbe3..633e55f1 100644
--- a/docs/html/search/classes_9.js
+++ b/docs/html/search/classes_9.js
@@ -1,5 +1,4 @@
 var searchData=
 [
-  ['jacobian_0',['Jacobian',['../structgridfire_1_1approx8_1_1_jacobian.html',1,'gridfire::approx8']]],
-  ['jacobianfunctor_1',['JacobianFunctor',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html',1,'gridfire::solver::DirectNetworkSolver']]]
+  ['jacobian_0',['Jacobian',['../structgridfire_1_1approx8_1_1_jacobian.html',1,'gridfire::approx8']]]
 ];
diff --git a/docs/html/search/classes_a.js b/docs/html/search/classes_a.js
index c677455b..35adaee4 100644
--- a/docs/html/search/classes_a.js
+++ b/docs/html/search/classes_a.js
@@ -1,4 +1,5 @@
 var searchData=
 [
-  ['logicalreaction_0',['LogicalReaction',['../classgridfire_1_1reaction_1_1_logical_reaction.html',1,'gridfire::reaction']]]
+  ['logicalreaclibreaction_0',['LogicalReaclibReaction',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html',1,'gridfire::reaction']]],
+  ['logicaltrigger_1',['LogicalTrigger',['../classgridfire_1_1trigger_1_1_logical_trigger.html',1,'gridfire::trigger']]]
 ];
diff --git a/docs/html/search/classes_c.js b/docs/html/search/classes_c.js
index a8b99b3a..b7fc6324 100644
--- a/docs/html/search/classes_c.js
+++ b/docs/html/search/classes_c.js
@@ -7,5 +7,6 @@ var searchData=
   ['networkprimingengineview_4',['NetworkPrimingEngineView',['../classgridfire_1_1_network_priming_engine_view.html',1,'gridfire']]],
   ['networkresizederror_5',['NetworkResizedError',['../classgridfire_1_1exceptions_1_1_network_resized_error.html',1,'gridfire::exceptions']]],
   ['networksolverstrategy_6',['NetworkSolverStrategy',['../classgridfire_1_1solver_1_1_network_solver_strategy.html',1,'gridfire::solver']]],
-  ['networksolverstrategy_3c_20dynamicengine_20_3e_7',['NetworkSolverStrategy&lt; DynamicEngine &gt;',['../classgridfire_1_1solver_1_1_network_solver_strategy.html',1,'gridfire::solver']]]
+  ['networksolverstrategy_3c_20dynamicengine_20_3e_7',['NetworkSolverStrategy&lt; DynamicEngine &gt;',['../classgridfire_1_1solver_1_1_network_solver_strategy.html',1,'gridfire::solver']]],
+  ['nottrigger_8',['NotTrigger',['../classgridfire_1_1trigger_1_1_not_trigger.html',1,'gridfire::trigger']]]
 ];
diff --git a/docs/html/search/classes_d.js b/docs/html/search/classes_d.js
index 4b6e4f95..5e3a3e7e 100644
--- a/docs/html/search/classes_d.js
+++ b/docs/html/search/classes_d.js
@@ -1,4 +1,6 @@
 var searchData=
 [
-  ['ode_0',['ODE',['../structgridfire_1_1approx8_1_1_o_d_e.html',1,'gridfire::approx8']]]
+  ['ode_0',['ODE',['../structgridfire_1_1approx8_1_1_o_d_e.html',1,'gridfire::approx8']]],
+  ['offdiagonaltrigger_1',['OffDiagonalTrigger',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html',1,'gridfire::trigger::solver::CVODE']]],
+  ['ortrigger_2',['OrTrigger',['../classgridfire_1_1trigger_1_1_or_trigger.html',1,'gridfire::trigger']]]
 ];
diff --git a/docs/html/search/defines_0.js b/docs/html/search/defines_0.js
new file mode 100644
index 00000000..34d8a2de
--- /dev/null
+++ b/docs/html/search/defines_0.js
@@ -0,0 +1,4 @@
+var searchData=
+[
+  ['gridfire_5fweak_5freaction_5flib_5fsentinel_0',['GRIDFIRE_WEAK_REACTION_LIB_SENTINEL',['../weak_8h.html#a56d76d6c9aef1e09f707c836a157ff27',1,'weak.h']]]
+];
diff --git a/docs/html/search/enums_2.js b/docs/html/search/enums_2.js
index 0b6ed710..1ccf11b0 100644
--- a/docs/html/search/enums_2.js
+++ b/docs/html/search/enums_2.js
@@ -1,5 +1,4 @@
 var searchData=
 [
-  ['networkbuilddepth_0',['NetworkBuildDepth',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57',1,'gridfire']]],
-  ['networkformat_1',['NetworkFormat',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37',1,'gridfire']]]
+  ['interpolationerrortype_0',['InterpolationErrorType',['../namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4',1,'gridfire::rates::weak']]]
 ];
diff --git a/docs/html/search/enums_3.js b/docs/html/search/enums_3.js
index 000bc54d..51f680ad 100644
--- a/docs/html/search/enums_3.js
+++ b/docs/html/search/enums_3.js
@@ -1,4 +1,6 @@
 var searchData=
 [
-  ['operators_0',['operators',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]]
+  ['networkbuilddepth_0',['NetworkBuildDepth',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57',1,'gridfire']]],
+  ['networkformat_1',['NetworkFormat',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37',1,'gridfire']]],
+  ['neutrinotypes_2',['NeutrinoTypes',['../namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70ca',1,'gridfire::rates::weak']]]
 ];
diff --git a/docs/html/search/enums_4.js b/docs/html/search/enums_4.js
index 8edfd040..000bc54d 100644
--- a/docs/html/search/enums_4.js
+++ b/docs/html/search/enums_4.js
@@ -1,4 +1,4 @@
 var searchData=
 [
-  ['primingreportstatus_0',['PrimingReportStatus',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154',1,'gridfire']]]
+  ['operators_0',['operators',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]]
 ];
diff --git a/docs/html/search/enums_5.js b/docs/html/search/enums_5.js
index 1e9ec0ec..8edfd040 100644
--- a/docs/html/search/enums_5.js
+++ b/docs/html/search/enums_5.js
@@ -1,5 +1,4 @@
 var searchData=
 [
-  ['screeningtype_0',['ScreeningType',['../namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25',1,'gridfire::screening']]],
-  ['staleengineerrortypes_1',['StaleEngineErrorTypes',['../namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7',1,'gridfire::expectations']]]
+  ['primingreportstatus_0',['PrimingReportStatus',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154',1,'gridfire']]]
 ];
diff --git a/docs/html/search/enums_6.js b/docs/html/search/enums_6.js
new file mode 100644
index 00000000..5840c586
--- /dev/null
+++ b/docs/html/search/enums_6.js
@@ -0,0 +1,4 @@
+var searchData=
+[
+  ['reactiontype_0',['ReactionType',['../namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e',1,'gridfire::reaction']]]
+];
diff --git a/docs/html/search/enums_7.js b/docs/html/search/enums_7.js
new file mode 100644
index 00000000..1e9ec0ec
--- /dev/null
+++ b/docs/html/search/enums_7.js
@@ -0,0 +1,5 @@
+var searchData=
+[
+  ['screeningtype_0',['ScreeningType',['../namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25',1,'gridfire::screening']]],
+  ['staleengineerrortypes_1',['StaleEngineErrorTypes',['../namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7',1,'gridfire::expectations']]]
+];
diff --git a/docs/html/search/enums_8.js b/docs/html/search/enums_8.js
new file mode 100644
index 00000000..3602ff1a
--- /dev/null
+++ b/docs/html/search/enums_8.js
@@ -0,0 +1,4 @@
+var searchData=
+[
+  ['tableaxes_0',['TableAxes',['../namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae',1,'gridfire::rates::weak']]]
+];
diff --git a/docs/html/search/enums_9.js b/docs/html/search/enums_9.js
new file mode 100644
index 00000000..c0d254a8
--- /dev/null
+++ b/docs/html/search/enums_9.js
@@ -0,0 +1,5 @@
+var searchData=
+[
+  ['weakmaperror_0',['WeakMapError',['../namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550',1,'gridfire::rates::weak']]],
+  ['weakreactiontype_1',['WeakReactionType',['../namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7',1,'gridfire::rates::weak']]]
+];
diff --git a/docs/html/search/enumvalues_1.js b/docs/html/search/enumvalues_1.js
index ca9d240b..abe20e9d 100644
--- a/docs/html/search/enumvalues_1.js
+++ b/docs/html/search/enumvalues_1.js
@@ -2,5 +2,8 @@ var searchData=
 [
   ['back_0',['BACK',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329ad8c6323fcc54dfc5319fbd935ae4f75d',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
   ['bare_1',['BARE',['../namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71',1,'gridfire::screening']]],
-  ['base_5fnetwork_5ftoo_5fshallow_2',['BASE_NETWORK_TOO_SHALLOW',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e',1,'gridfire']]]
+  ['base_5fnetwork_5ftoo_5fshallow_2',['BASE_NETWORK_TOO_SHALLOW',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e',1,'gridfire']]],
+  ['beta_5fminus_5fdecay_3',['BETA_MINUS_DECAY',['../namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a12122315f1a94a10826f77a8fd949a94',1,'gridfire::rates::weak']]],
+  ['beta_5fplus_5fdecay_4',['BETA_PLUS_DECAY',['../namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a2f146a0cd66e2d010c8802852db26759',1,'gridfire::rates::weak']]],
+  ['bounds_5ferror_5',['BOUNDS_ERROR',['../namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4a1516ba0949425312ba92ea385c80dc7a',1,'gridfire::rates::weak']]]
 ];
diff --git a/docs/html/search/enumvalues_10.js b/docs/html/search/enumvalues_10.js
new file mode 100644
index 00000000..be4ec23f
--- /dev/null
+++ b/docs/html/search/enumvalues_10.js
@@ -0,0 +1,4 @@
+var searchData=
+[
+  ['valuesatcompiletime_0',['ValuesAtCompileTime',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a29d2722f9dbe03584086bc1ab8e102c0',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]]
+];
diff --git a/docs/html/search/enumvalues_11.js b/docs/html/search/enumvalues_11.js
new file mode 100644
index 00000000..315f67d2
--- /dev/null
+++ b/docs/html/search/enumvalues_11.js
@@ -0,0 +1,4 @@
+var searchData=
+[
+  ['weak_0',['WEAK',['../namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74ea32c7d8943bec86a6d7d5e03598670ca8',1,'gridfire::reaction::WEAK'],['../namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8',1,'gridfire::screening::WEAK']]]
+];
diff --git a/docs/html/search/enumvalues_3.js b/docs/html/search/enumvalues_3.js
index 554f7803..1d34cc5b 100644
--- a/docs/html/search/enumvalues_3.js
+++ b/docs/html/search/enumvalues_3.js
@@ -1,12 +1,6 @@
 var searchData=
 [
-  ['failed_5fto_5ffinalize_5fcomposition_0',['FAILED_TO_FINALIZE_COMPOSITION',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f',1,'gridfire']]],
-  ['failed_5fto_5ffind_5fcreation_5fchannel_1',['FAILED_TO_FIND_CREATION_CHANNEL',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a',1,'gridfire']]],
-  ['failed_5fto_5ffind_5fpriming_5freactions_2',['FAILED_TO_FIND_PRIMING_REACTIONS',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931',1,'gridfire']]],
-  ['failure_3',['FAILURE',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca36fc6065a3e970bc3e6b2e59da52bf2a',1,'gridfire::expectations']]],
-  ['fifthorder_4',['FifthOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a5105376c2b90747e00bed5bf2953dd56',1,'gridfire']]],
-  ['fourthorder_5',['FourthOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a100e3bf0197221c19b222badf42aa964',1,'gridfire']]],
-  ['front_6',['FRONT',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
-  ['full_7',['Full',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75',1,'gridfire']]],
-  ['full_5fsuccess_8',['FULL_SUCCESS',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a',1,'gridfire']]]
+  ['electron_5fantineutrino_0',['ELECTRON_ANTINEUTRINO',['../namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa8d99b7a21c927a7b8274caaf23290de6',1,'gridfire::rates::weak']]],
+  ['electron_5fcapture_1',['ELECTRON_CAPTURE',['../namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7',1,'gridfire::rates::weak']]],
+  ['electron_5fneutrino_2',['ELECTRON_NEUTRINO',['../namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa3fde0fbf2166dfb3dd60458c535699d8',1,'gridfire::rates::weak']]]
 ];
diff --git a/docs/html/search/enumvalues_4.js b/docs/html/search/enumvalues_4.js
index 71706cee..554f7803 100644
--- a/docs/html/search/enumvalues_4.js
+++ b/docs/html/search/enumvalues_4.js
@@ -1,7 +1,12 @@
 var searchData=
 [
-  ['generatejacobianmatrix_0',['GenerateJacobianMatrix',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9e720102de6020a01552bc0e8935c566',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['getspeciesdestructiontimescales_1',['GetSpeciesDestructionTimescales',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['getspeciestimescales_2',['GetSpeciesTimescales',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['groundstate_3',['GroundState',['../namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335',1,'gridfire::partition']]]
+  ['failed_5fto_5ffinalize_5fcomposition_0',['FAILED_TO_FINALIZE_COMPOSITION',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f',1,'gridfire']]],
+  ['failed_5fto_5ffind_5fcreation_5fchannel_1',['FAILED_TO_FIND_CREATION_CHANNEL',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a',1,'gridfire']]],
+  ['failed_5fto_5ffind_5fpriming_5freactions_2',['FAILED_TO_FIND_PRIMING_REACTIONS',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931',1,'gridfire']]],
+  ['failure_3',['FAILURE',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca36fc6065a3e970bc3e6b2e59da52bf2a',1,'gridfire::expectations']]],
+  ['fifthorder_4',['FifthOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a5105376c2b90747e00bed5bf2953dd56',1,'gridfire']]],
+  ['fourthorder_5',['FourthOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a100e3bf0197221c19b222badf42aa964',1,'gridfire']]],
+  ['front_6',['FRONT',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+  ['full_7',['Full',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75',1,'gridfire']]],
+  ['full_5fsuccess_8',['FULL_SUCCESS',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a',1,'gridfire']]]
 ];
diff --git a/docs/html/search/enumvalues_5.js b/docs/html/search/enumvalues_5.js
index c2558209..71706cee 100644
--- a/docs/html/search/enumvalues_5.js
+++ b/docs/html/search/enumvalues_5.js
@@ -1,5 +1,7 @@
 var searchData=
 [
-  ['index_0',['INDEX',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87cacb4ae3b37047fb4b2c0d16f8bf84f076',1,'gridfire::expectations']]],
-  ['inputsatcompiletime_1',['InputsAtCompileTime',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a753b594931f9ee122e2079986ad572c9',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]]
+  ['generatejacobianmatrix_0',['GenerateJacobianMatrix',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9e720102de6020a01552bc0e8935c566',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['getspeciesdestructiontimescales_1',['GetSpeciesDestructionTimescales',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['getspeciestimescales_2',['GetSpeciesTimescales',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['groundstate_3',['GroundState',['../namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335',1,'gridfire::partition']]]
 ];
diff --git a/docs/html/search/enumvalues_6.js b/docs/html/search/enumvalues_6.js
index 8354657b..c2558209 100644
--- a/docs/html/search/enumvalues_6.js
+++ b/docs/html/search/enumvalues_6.js
@@ -1,5 +1,5 @@
 var searchData=
 [
-  ['max_5fiterations_5freached_0',['MAX_ITERATIONS_REACHED',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287',1,'gridfire']]],
-  ['middle_1',['MIDDLE',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735',1,'gridfire::partition::RauscherThielemannPartitionFunction']]]
+  ['index_0',['INDEX',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87cacb4ae3b37047fb4b2c0d16f8bf84f076',1,'gridfire::expectations']]],
+  ['inputsatcompiletime_1',['InputsAtCompileTime',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a753b594931f9ee122e2079986ad572c9',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]]
 ];
diff --git a/docs/html/search/enumvalues_7.js b/docs/html/search/enumvalues_7.js
index 173eddf7..f45ae942 100644
--- a/docs/html/search/enumvalues_7.js
+++ b/docs/html/search/enumvalues_7.js
@@ -1,4 +1,5 @@
 var searchData=
 [
-  ['no_5fspecies_5fto_5fprime_0',['NO_SPECIES_TO_PRIME',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45',1,'gridfire']]]
+  ['log_5frhoye_0',['LOG_RHOYE',['../namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea1448b5920e7c95f07cbc08d3ba5b9746',1,'gridfire::rates::weak']]],
+  ['logical_5freaclib_1',['LOGICAL_REACLIB',['../namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74ea32b0fb6c82a2ec42865b2c823216baa9',1,'gridfire::reaction']]]
 ];
diff --git a/docs/html/search/enumvalues_8.js b/docs/html/search/enumvalues_8.js
index 98a9f886..19014aed 100644
--- a/docs/html/search/enumvalues_8.js
+++ b/docs/html/search/enumvalues_8.js
@@ -1,4 +1,8 @@
 var searchData=
 [
-  ['other_0',['Other',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]]
+  ['max_5fiterations_5freached_0',['MAX_ITERATIONS_REACHED',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287',1,'gridfire']]],
+  ['middle_1',['MIDDLE',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+  ['mue_2',['MUE',['../namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea5257ed2407fcbb45ab05897fdea80c2b',1,'gridfire::rates::weak']]],
+  ['muon_5fantineutrino_3',['MUON_ANTINEUTRINO',['../namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caae6f2e17ddd61e72e331faf8700bbedef',1,'gridfire::rates::weak']]],
+  ['muon_5fneutrino_4',['MUON_NEUTRINO',['../namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caaabd6fefb3f84f632c3968acfcd76d554',1,'gridfire::rates::weak']]]
 ];
diff --git a/docs/html/search/enumvalues_9.js b/docs/html/search/enumvalues_9.js
index f7d69e73..173eddf7 100644
--- a/docs/html/search/enumvalues_9.js
+++ b/docs/html/search/enumvalues_9.js
@@ -1,5 +1,4 @@
 var searchData=
 [
-  ['rauscherthielemann_0',['RauscherThielemann',['../namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728ca4ca5b5dcd7343b06b860f05f3bc454b1',1,'gridfire::partition']]],
-  ['reaclib_1',['REACLIB',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182',1,'gridfire']]]
+  ['no_5fspecies_5fto_5fprime_0',['NO_SPECIES_TO_PRIME',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45',1,'gridfire']]]
 ];
diff --git a/docs/html/search/enumvalues_a.js b/docs/html/search/enumvalues_a.js
index a5c1315d..98a9f886 100644
--- a/docs/html/search/enumvalues_a.js
+++ b/docs/html/search/enumvalues_a.js
@@ -1,7 +1,4 @@
 var searchData=
 [
-  ['secondorder_0',['SecondOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a264572d66aed5373d19dc80c7cde1f46',1,'gridfire']]],
-  ['shallow_1',['Shallow',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a928d0f1285ee7d36c1c2fa1b1b7a164c',1,'gridfire']]],
-  ['stale_2',['STALE',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca4d855a061b3066dc14a3b12ed26b5456',1,'gridfire::expectations']]],
-  ['system_5fresized_3',['SYSTEM_RESIZED',['../namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7a109aa03c8823fcc0ab193b7e48664cbf',1,'gridfire::expectations']]]
+  ['other_0',['Other',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]]
 ];
diff --git a/docs/html/search/enumvalues_b.js b/docs/html/search/enumvalues_b.js
index ceded891..726df2c5 100644
--- a/docs/html/search/enumvalues_b.js
+++ b/docs/html/search/enumvalues_b.js
@@ -1,4 +1,4 @@
 var searchData=
 [
-  ['thirdorder_0',['ThirdOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a3fc719e07f9f63e7f11a3d4fb74b476f',1,'gridfire']]]
+  ['positron_5fcapture_0',['POSITRON_CAPTURE',['../namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7ae0be5539e1cf1c424806baa62540aa9d',1,'gridfire::rates::weak']]]
 ];
diff --git a/docs/html/search/enumvalues_c.js b/docs/html/search/enumvalues_c.js
index 37f42e24..d8c5bd7f 100644
--- a/docs/html/search/enumvalues_c.js
+++ b/docs/html/search/enumvalues_c.js
@@ -1,4 +1,5 @@
 var searchData=
 [
-  ['unknown_0',['UNKNOWN',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2',1,'gridfire']]]
+  ['rauscherthielemann_0',['RauscherThielemann',['../namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728ca4ca5b5dcd7343b06b860f05f3bc454b1',1,'gridfire::partition']]],
+  ['reaclib_1',['REACLIB',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182',1,'gridfire::REACLIB'],['../namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74eaf9885ed04411bef7b70f78b643c6a220',1,'gridfire::reaction::REACLIB']]]
 ];
diff --git a/docs/html/search/enumvalues_d.js b/docs/html/search/enumvalues_d.js
index be4ec23f..69268a42 100644
--- a/docs/html/search/enumvalues_d.js
+++ b/docs/html/search/enumvalues_d.js
@@ -1,4 +1,8 @@
 var searchData=
 [
-  ['valuesatcompiletime_0',['ValuesAtCompileTime',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a29d2722f9dbe03584086bc1ab8e102c0',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]]
+  ['secondorder_0',['SecondOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a264572d66aed5373d19dc80c7cde1f46',1,'gridfire']]],
+  ['shallow_1',['Shallow',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a928d0f1285ee7d36c1c2fa1b1b7a164c',1,'gridfire']]],
+  ['species_5fnot_5ffound_2',['SPECIES_NOT_FOUND',['../namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550a3659baf2b06bba6c02bad8316d517761',1,'gridfire::rates::weak']]],
+  ['stale_3',['STALE',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca4d855a061b3066dc14a3b12ed26b5456',1,'gridfire::expectations']]],
+  ['system_5fresized_4',['SYSTEM_RESIZED',['../namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7a109aa03c8823fcc0ab193b7e48664cbf',1,'gridfire::expectations']]]
 ];
diff --git a/docs/html/search/enumvalues_e.js b/docs/html/search/enumvalues_e.js
index 720075f0..5196d419 100644
--- a/docs/html/search/enumvalues_e.js
+++ b/docs/html/search/enumvalues_e.js
@@ -1,4 +1,7 @@
 var searchData=
 [
-  ['weak_0',['WEAK',['../namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8',1,'gridfire::screening']]]
+  ['t9_0',['T9',['../namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755',1,'gridfire::rates::weak']]],
+  ['tau_5fantineutrino_1',['TAU_ANTINEUTRINO',['../namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa2712e9cfc69c4ee0c4ed136338acb6cc',1,'gridfire::rates::weak']]],
+  ['tau_5fneutrino_2',['TAU_NEUTRINO',['../namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa8c2cdafd7125a278e6e0da4c04e29d9e',1,'gridfire::rates::weak']]],
+  ['thirdorder_3',['ThirdOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a3fc719e07f9f63e7f11a3d4fb74b476f',1,'gridfire']]]
 ];
diff --git a/docs/html/search/enumvalues_f.js b/docs/html/search/enumvalues_f.js
new file mode 100644
index 00000000..f523ee86
--- /dev/null
+++ b/docs/html/search/enumvalues_f.js
@@ -0,0 +1,6 @@
+var searchData=
+[
+  ['unknown_0',['UNKNOWN',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2',1,'gridfire']]],
+  ['unknown_5ferror_1',['UNKNOWN_ERROR',['../namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550a9a10f345b0f755d461a8673a5e9ef6b4',1,'gridfire::rates::weak::UNKNOWN_ERROR'],['../namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4a9a10f345b0f755d461a8673a5e9ef6b4',1,'gridfire::rates::weak::UNKNOWN_ERROR']]],
+  ['unknown_5fspecies_5ferror_2',['UNKNOWN_SPECIES_ERROR',['../namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4acc038b1c5dbfcede2eaa525fe0e2379d',1,'gridfire::rates::weak']]]
+];
diff --git a/docs/html/search/files_1.js b/docs/html/search/files_1.js
index ae6bc8d1..a8393ff7 100644
--- a/docs/html/search/files_1.js
+++ b/docs/html/search/files_1.js
@@ -1,5 +1,7 @@
 var searchData=
 [
   ['construction_2ecpp_0',['construction.cpp',['../construction_8cpp.html',1,'']]],
-  ['construction_2eh_1',['construction.h',['../construction_8h.html',1,'']]]
+  ['construction_2eh_1',['construction.h',['../construction_8h.html',1,'']]],
+  ['cvode_5fsolver_5fstrategy_2ecpp_2',['CVODE_solver_strategy.cpp',['../_c_v_o_d_e__solver__strategy_8cpp.html',1,'']]],
+  ['cvode_5fsolver_5fstrategy_2eh_3',['CVODE_solver_strategy.h',['../_c_v_o_d_e__solver__strategy_8h.html',1,'']]]
 ];
diff --git a/docs/html/search/files_2.js b/docs/html/search/files_2.js
index c9843450..e95a6294 100644
--- a/docs/html/search/files_2.js
+++ b/docs/html/search/files_2.js
@@ -1,25 +1,5 @@
 var searchData=
 [
-  ['engine_2eh_0',['engine.h',['../engine_8h.html',1,'']]],
-  ['engine_5fabstract_2eh_1',['engine_abstract.h',['../engine__abstract_8h.html',1,'']]],
-  ['engine_5fadaptive_2ecpp_2',['engine_adaptive.cpp',['../engine__adaptive_8cpp.html',1,'']]],
-  ['engine_5fadaptive_2eh_3',['engine_adaptive.h',['../engine__adaptive_8h.html',1,'']]],
-  ['engine_5fapprox8_2ecpp_4',['engine_approx8.cpp',['../engine__approx8_8cpp.html',1,'']]],
-  ['engine_5fapprox8_2eh_5',['engine_approx8.h',['../engine__approx8_8h.html',1,'']]],
-  ['engine_5fdefined_2ecpp_6',['engine_defined.cpp',['../engine__defined_8cpp.html',1,'']]],
-  ['engine_5fdefined_2eh_7',['engine_defined.h',['../engine__defined_8h.html',1,'']]],
-  ['engine_5fgraph_2ecpp_8',['engine_graph.cpp',['../engine__graph_8cpp.html',1,'']]],
-  ['engine_5fgraph_2eh_9',['engine_graph.h',['../engine__graph_8h.html',1,'']]],
-  ['engine_5fmultiscale_2ecpp_10',['engine_multiscale.cpp',['../engine__multiscale_8cpp.html',1,'']]],
-  ['engine_5fmultiscale_2eh_11',['engine_multiscale.h',['../engine__multiscale_8h.html',1,'']]],
-  ['engine_5fpriming_2ecpp_12',['engine_priming.cpp',['../engine__priming_8cpp.html',1,'']]],
-  ['engine_5fpriming_2eh_13',['engine_priming.h',['../engine__priming_8h.html',1,'']]],
-  ['engine_5fprocedures_2eh_14',['engine_procedures.h',['../engine__procedures_8h.html',1,'']]],
-  ['engine_5ftypes_2eh_15',['engine_types.h',['../engine__types_8h.html',1,'']]],
-  ['engine_5fview_5fabstract_2eh_16',['engine_view_abstract.h',['../engine__view__abstract_8h.html',1,'']]],
-  ['engine_5fviews_2eh_17',['engine_views.h',['../engine__views_8h.html',1,'']]],
-  ['error_5fengine_2eh_18',['error_engine.h',['../error__engine_8h.html',1,'']]],
-  ['exceptions_2eh_19',['exceptions.h',['../exceptions_8h.html',1,'']]],
-  ['expectations_2eh_20',['expectations.h',['../expectations_8h.html',1,'']]],
-  ['expected_5fengine_2eh_21',['expected_engine.h',['../expected__engine_8h.html',1,'']]]
+  ['dynamic_5fengine_5fdiagnostics_2ecpp_0',['dynamic_engine_diagnostics.cpp',['../dynamic__engine__diagnostics_8cpp.html',1,'']]],
+  ['dynamic_5fengine_5fdiagnostics_2eh_1',['dynamic_engine_diagnostics.h',['../dynamic__engine__diagnostics_8h.html',1,'']]]
 ];
diff --git a/docs/html/search/files_3.js b/docs/html/search/files_3.js
index 176c2d29..8b358bc7 100644
--- a/docs/html/search/files_3.js
+++ b/docs/html/search/files_3.js
@@ -1,4 +1,27 @@
 var searchData=
 [
-  ['io_2eh_0',['io.h',['../io_8h.html',1,'']]]
+  ['engine_2eh_0',['engine.h',['../engine_8h.html',1,'']]],
+  ['engine_5fabstract_2eh_1',['engine_abstract.h',['../engine__abstract_8h.html',1,'']]],
+  ['engine_5fadaptive_2ecpp_2',['engine_adaptive.cpp',['../engine__adaptive_8cpp.html',1,'']]],
+  ['engine_5fadaptive_2eh_3',['engine_adaptive.h',['../engine__adaptive_8h.html',1,'']]],
+  ['engine_5fapprox8_2ecpp_4',['engine_approx8.cpp',['../engine__approx8_8cpp.html',1,'']]],
+  ['engine_5fapprox8_2eh_5',['engine_approx8.h',['../engine__approx8_8h.html',1,'']]],
+  ['engine_5fdefined_2ecpp_6',['engine_defined.cpp',['../engine__defined_8cpp.html',1,'']]],
+  ['engine_5fdefined_2eh_7',['engine_defined.h',['../engine__defined_8h.html',1,'']]],
+  ['engine_5fgraph_2ecpp_8',['engine_graph.cpp',['../engine__graph_8cpp.html',1,'']]],
+  ['engine_5fgraph_2eh_9',['engine_graph.h',['../engine__graph_8h.html',1,'']]],
+  ['engine_5fmultiscale_2ecpp_10',['engine_multiscale.cpp',['../engine__multiscale_8cpp.html',1,'']]],
+  ['engine_5fmultiscale_2eh_11',['engine_multiscale.h',['../engine__multiscale_8h.html',1,'']]],
+  ['engine_5fpartitioning_5ftrigger_2ecpp_12',['engine_partitioning_trigger.cpp',['../engine__partitioning__trigger_8cpp.html',1,'']]],
+  ['engine_5fpartitioning_5ftrigger_2eh_13',['engine_partitioning_trigger.h',['../engine__partitioning__trigger_8h.html',1,'']]],
+  ['engine_5fpriming_2ecpp_14',['engine_priming.cpp',['../engine__priming_8cpp.html',1,'']]],
+  ['engine_5fpriming_2eh_15',['engine_priming.h',['../engine__priming_8h.html',1,'']]],
+  ['engine_5fprocedures_2eh_16',['engine_procedures.h',['../engine__procedures_8h.html',1,'']]],
+  ['engine_5ftypes_2eh_17',['engine_types.h',['../engine__types_8h.html',1,'']]],
+  ['engine_5fview_5fabstract_2eh_18',['engine_view_abstract.h',['../engine__view__abstract_8h.html',1,'']]],
+  ['engine_5fviews_2eh_19',['engine_views.h',['../engine__views_8h.html',1,'']]],
+  ['error_5fengine_2eh_20',['error_engine.h',['../error__engine_8h.html',1,'']]],
+  ['exceptions_2eh_21',['exceptions.h',['../exceptions_8h.html',1,'']]],
+  ['expectations_2eh_22',['expectations.h',['../expectations_8h.html',1,'']]],
+  ['expected_5fengine_2eh_23',['expected_engine.h',['../expected__engine_8h.html',1,'']]]
 ];
diff --git a/docs/html/search/files_4.js b/docs/html/search/files_4.js
index d87b31db..176c2d29 100644
--- a/docs/html/search/files_4.js
+++ b/docs/html/search/files_4.js
@@ -1,5 +1,4 @@
 var searchData=
 [
-  ['logging_2ecpp_0',['logging.cpp',['../logging_8cpp.html',1,'']]],
-  ['logging_2eh_1',['logging.h',['../logging_8h.html',1,'']]]
+  ['io_2eh_0',['io.h',['../io_8h.html',1,'']]]
 ];
diff --git a/docs/html/search/files_5.js b/docs/html/search/files_5.js
index f5e1c899..d87b31db 100644
--- a/docs/html/search/files_5.js
+++ b/docs/html/search/files_5.js
@@ -1,4 +1,5 @@
 var searchData=
 [
-  ['mainpage_2emd_0',['mainpage.md',['../mainpage_8md.html',1,'']]]
+  ['logging_2ecpp_0',['logging.cpp',['../logging_8cpp.html',1,'']]],
+  ['logging_2eh_1',['logging.h',['../logging_8h.html',1,'']]]
 ];
diff --git a/docs/html/search/files_6.js b/docs/html/search/files_6.js
index e1b2f50b..f5e1c899 100644
--- a/docs/html/search/files_6.js
+++ b/docs/html/search/files_6.js
@@ -1,7 +1,4 @@
 var searchData=
 [
-  ['network_2ecpp_0',['network.cpp',['../network_8cpp.html',1,'']]],
-  ['network_2eh_1',['network.h',['../network_8h.html',1,'']]],
-  ['network_5ffile_2ecpp_2',['network_file.cpp',['../network__file_8cpp.html',1,'']]],
-  ['network_5ffile_2eh_3',['network_file.h',['../network__file_8h.html',1,'']]]
+  ['mainpage_2emd_0',['mainpage.md',['../mainpage_8md.html',1,'']]]
 ];
diff --git a/docs/html/search/files_7.js b/docs/html/search/files_7.js
index 4c05a7a1..e1b2f50b 100644
--- a/docs/html/search/files_7.js
+++ b/docs/html/search/files_7.js
@@ -1,24 +1,7 @@
 var searchData=
 [
-  ['partition_2eh_0',['partition.h',['../partition_8h.html',1,'']]],
-  ['partition_5fabstract_2eh_1',['partition_abstract.h',['../partition__abstract_8h.html',1,'']]],
-  ['partition_5fcomposite_2ecpp_2',['partition_composite.cpp',['../partition__composite_8cpp.html',1,'']]],
-  ['partition_5fcomposite_2eh_3',['partition_composite.h',['../partition__composite_8h.html',1,'']]],
-  ['partition_5fground_2ecpp_4',['partition_ground.cpp',['../partition__ground_8cpp.html',1,'']]],
-  ['partition_5fground_2eh_5',['partition_ground.h',['../partition__ground_8h.html',1,'']]],
-  ['partition_5frauscher_5fthielemann_2ecpp_6',['partition_rauscher_thielemann.cpp',['../partition__rauscher__thielemann_8cpp.html',1,'']]],
-  ['partition_5frauscher_5fthielemann_2eh_7',['partition_rauscher_thielemann.h',['../partition__rauscher__thielemann_8h.html',1,'']]],
-  ['partition_5ftypes_2eh_8',['partition_types.h',['../partition__types_8h.html',1,'']]],
-  ['priming_2ecpp_9',['priming.cpp',['../priming_8cpp.html',1,'']]],
-  ['priming_2eh_10',['priming.h',['../priming_8h.html',1,'']]],
-  ['py_5fengine_2ecpp_11',['py_engine.cpp',['../py__engine_8cpp.html',1,'']]],
-  ['py_5fengine_2eh_12',['py_engine.h',['../py__engine_8h.html',1,'']]],
-  ['py_5fio_2ecpp_13',['py_io.cpp',['../py__io_8cpp.html',1,'']]],
-  ['py_5fio_2eh_14',['py_io.h',['../py__io_8h.html',1,'']]],
-  ['py_5fpartition_2ecpp_15',['py_partition.cpp',['../py__partition_8cpp.html',1,'']]],
-  ['py_5fpartition_2eh_16',['py_partition.h',['../py__partition_8h.html',1,'']]],
-  ['py_5fscreening_2ecpp_17',['py_screening.cpp',['../py__screening_8cpp.html',1,'']]],
-  ['py_5fscreening_2eh_18',['py_screening.h',['../py__screening_8h.html',1,'']]],
-  ['py_5fsolver_2ecpp_19',['py_solver.cpp',['../py__solver_8cpp.html',1,'']]],
-  ['py_5fsolver_2eh_20',['py_solver.h',['../py__solver_8h.html',1,'']]]
+  ['network_2ecpp_0',['network.cpp',['../network_8cpp.html',1,'']]],
+  ['network_2eh_1',['network.h',['../network_8h.html',1,'']]],
+  ['network_5ffile_2ecpp_2',['network_file.cpp',['../network__file_8cpp.html',1,'']]],
+  ['network_5ffile_2eh_3',['network_file.h',['../network__file_8h.html',1,'']]]
 ];
diff --git a/docs/html/search/files_8.js b/docs/html/search/files_8.js
index e9b9d31a..4c05a7a1 100644
--- a/docs/html/search/files_8.js
+++ b/docs/html/search/files_8.js
@@ -1,11 +1,24 @@
 var searchData=
 [
-  ['rauscher_5fthielemann_5fpartition_5fdata_2eh_0',['rauscher_thielemann_partition_data.h',['../rauscher__thielemann__partition__data_8h.html',1,'']]],
-  ['rauscher_5fthielemann_5fpartition_5fdata_5frecord_2eh_1',['rauscher_thielemann_partition_data_record.h',['../rauscher__thielemann__partition__data__record_8h.html',1,'']]],
-  ['reaclib_2ecpp_2',['reaclib.cpp',['../reaclib_8cpp.html',1,'']]],
-  ['reaclib_2eh_3',['reaclib.h',['../reaclib_8h.html',1,'']]],
-  ['reaction_2ecpp_4',['reaction.cpp',['../reaction_8cpp.html',1,'']]],
-  ['reaction_2eh_5',['reaction.h',['../reaction_8h.html',1,'']]],
-  ['reactions_5fdata_2eh_6',['reactions_data.h',['../reactions__data_8h.html',1,'']]],
-  ['reporting_2eh_7',['reporting.h',['../reporting_8h.html',1,'']]]
+  ['partition_2eh_0',['partition.h',['../partition_8h.html',1,'']]],
+  ['partition_5fabstract_2eh_1',['partition_abstract.h',['../partition__abstract_8h.html',1,'']]],
+  ['partition_5fcomposite_2ecpp_2',['partition_composite.cpp',['../partition__composite_8cpp.html',1,'']]],
+  ['partition_5fcomposite_2eh_3',['partition_composite.h',['../partition__composite_8h.html',1,'']]],
+  ['partition_5fground_2ecpp_4',['partition_ground.cpp',['../partition__ground_8cpp.html',1,'']]],
+  ['partition_5fground_2eh_5',['partition_ground.h',['../partition__ground_8h.html',1,'']]],
+  ['partition_5frauscher_5fthielemann_2ecpp_6',['partition_rauscher_thielemann.cpp',['../partition__rauscher__thielemann_8cpp.html',1,'']]],
+  ['partition_5frauscher_5fthielemann_2eh_7',['partition_rauscher_thielemann.h',['../partition__rauscher__thielemann_8h.html',1,'']]],
+  ['partition_5ftypes_2eh_8',['partition_types.h',['../partition__types_8h.html',1,'']]],
+  ['priming_2ecpp_9',['priming.cpp',['../priming_8cpp.html',1,'']]],
+  ['priming_2eh_10',['priming.h',['../priming_8h.html',1,'']]],
+  ['py_5fengine_2ecpp_11',['py_engine.cpp',['../py__engine_8cpp.html',1,'']]],
+  ['py_5fengine_2eh_12',['py_engine.h',['../py__engine_8h.html',1,'']]],
+  ['py_5fio_2ecpp_13',['py_io.cpp',['../py__io_8cpp.html',1,'']]],
+  ['py_5fio_2eh_14',['py_io.h',['../py__io_8h.html',1,'']]],
+  ['py_5fpartition_2ecpp_15',['py_partition.cpp',['../py__partition_8cpp.html',1,'']]],
+  ['py_5fpartition_2eh_16',['py_partition.h',['../py__partition_8h.html',1,'']]],
+  ['py_5fscreening_2ecpp_17',['py_screening.cpp',['../py__screening_8cpp.html',1,'']]],
+  ['py_5fscreening_2eh_18',['py_screening.h',['../py__screening_8h.html',1,'']]],
+  ['py_5fsolver_2ecpp_19',['py_solver.cpp',['../py__solver_8cpp.html',1,'']]],
+  ['py_5fsolver_2eh_20',['py_solver.h',['../py__solver_8h.html',1,'']]]
 ];
diff --git a/docs/html/search/files_9.js b/docs/html/search/files_9.js
index d4a5127a..e9b9d31a 100644
--- a/docs/html/search/files_9.js
+++ b/docs/html/search/files_9.js
@@ -1,13 +1,11 @@
 var searchData=
 [
-  ['screening_2eh_0',['screening.h',['../screening_8h.html',1,'']]],
-  ['screening_5fabstract_2eh_1',['screening_abstract.h',['../screening__abstract_8h.html',1,'']]],
-  ['screening_5fbare_2ecpp_2',['screening_bare.cpp',['../screening__bare_8cpp.html',1,'']]],
-  ['screening_5fbare_2eh_3',['screening_bare.h',['../screening__bare_8h.html',1,'']]],
-  ['screening_5ftypes_2ecpp_4',['screening_types.cpp',['../screening__types_8cpp.html',1,'']]],
-  ['screening_5ftypes_2eh_5',['screening_types.h',['../screening__types_8h.html',1,'']]],
-  ['screening_5fweak_2ecpp_6',['screening_weak.cpp',['../screening__weak_8cpp.html',1,'']]],
-  ['screening_5fweak_2eh_7',['screening_weak.h',['../screening__weak_8h.html',1,'']]],
-  ['solver_2ecpp_8',['solver.cpp',['../solver_8cpp.html',1,'']]],
-  ['solver_2eh_9',['solver.h',['../solver_8h.html',1,'']]]
+  ['rauscher_5fthielemann_5fpartition_5fdata_2eh_0',['rauscher_thielemann_partition_data.h',['../rauscher__thielemann__partition__data_8h.html',1,'']]],
+  ['rauscher_5fthielemann_5fpartition_5fdata_5frecord_2eh_1',['rauscher_thielemann_partition_data_record.h',['../rauscher__thielemann__partition__data__record_8h.html',1,'']]],
+  ['reaclib_2ecpp_2',['reaclib.cpp',['../reaclib_8cpp.html',1,'']]],
+  ['reaclib_2eh_3',['reaclib.h',['../reaclib_8h.html',1,'']]],
+  ['reaction_2ecpp_4',['reaction.cpp',['../reaction_8cpp.html',1,'']]],
+  ['reaction_2eh_5',['reaction.h',['../reaction_8h.html',1,'']]],
+  ['reactions_5fdata_2eh_6',['reactions_data.h',['../reactions__data_8h.html',1,'']]],
+  ['reporting_2eh_7',['reporting.h',['../reporting_8h.html',1,'']]]
 ];
diff --git a/docs/html/search/files_a.js b/docs/html/search/files_a.js
index 039061f1..2edbc781 100644
--- a/docs/html/search/files_a.js
+++ b/docs/html/search/files_a.js
@@ -1,4 +1,14 @@
 var searchData=
 [
-  ['usage_2emd_0',['usage.md',['../usage_8md.html',1,'']]]
+  ['screening_2eh_0',['screening.h',['../screening_8h.html',1,'']]],
+  ['screening_5fabstract_2eh_1',['screening_abstract.h',['../screening__abstract_8h.html',1,'']]],
+  ['screening_5fbare_2ecpp_2',['screening_bare.cpp',['../screening__bare_8cpp.html',1,'']]],
+  ['screening_5fbare_2eh_3',['screening_bare.h',['../screening__bare_8h.html',1,'']]],
+  ['screening_5fintermediate_2eh_4',['screening_intermediate.h',['../screening__intermediate_8h.html',1,'']]],
+  ['screening_5ftypes_2ecpp_5',['screening_types.cpp',['../screening__types_8cpp.html',1,'']]],
+  ['screening_5ftypes_2eh_6',['screening_types.h',['../screening__types_8h.html',1,'']]],
+  ['screening_5fweak_2ecpp_7',['screening_weak.cpp',['../screening__weak_8cpp.html',1,'']]],
+  ['screening_5fweak_2eh_8',['screening_weak.h',['../screening__weak_8h.html',1,'']]],
+  ['solver_2eh_9',['solver.h',['../solver_8h.html',1,'']]],
+  ['solver_5finterfaces_2eh_10',['solver_interfaces.h',['../solver__interfaces_8h.html',1,'']]]
 ];
diff --git a/docs/html/search/files_b.js b/docs/html/search/files_b.js
new file mode 100644
index 00000000..5ebfdb01
--- /dev/null
+++ b/docs/html/search/files_b.js
@@ -0,0 +1,8 @@
+var searchData=
+[
+  ['table_5fformat_2eh_0',['table_format.h',['../table__format_8h.html',1,'']]],
+  ['trigger_5fabstract_2eh_1',['trigger_abstract.h',['../trigger__abstract_8h.html',1,'']]],
+  ['trigger_5flogical_2eh_2',['trigger_logical.h',['../trigger__logical_8h.html',1,'']]],
+  ['trigger_5fpprint_2eh_3',['trigger_pprint.h',['../trigger__pprint_8h.html',1,'']]],
+  ['trigger_5fresult_2eh_4',['trigger_result.h',['../trigger__result_8h.html',1,'']]]
+];
diff --git a/docs/html/search/files_c.js b/docs/html/search/files_c.js
new file mode 100644
index 00000000..039061f1
--- /dev/null
+++ b/docs/html/search/files_c.js
@@ -0,0 +1,4 @@
+var searchData=
+[
+  ['usage_2emd_0',['usage.md',['../usage_8md.html',1,'']]]
+];
diff --git a/docs/html/search/files_d.js b/docs/html/search/files_d.js
new file mode 100644
index 00000000..0354a981
--- /dev/null
+++ b/docs/html/search/files_d.js
@@ -0,0 +1,9 @@
+var searchData=
+[
+  ['weak_2ecpp_0',['weak.cpp',['../weak_8cpp.html',1,'']]],
+  ['weak_2eh_1',['weak.h',['../weak_8h.html',1,'']]],
+  ['weak_5finterpolator_2ecpp_2',['weak_interpolator.cpp',['../weak__interpolator_8cpp.html',1,'']]],
+  ['weak_5finterpolator_2eh_3',['weak_interpolator.h',['../weak__interpolator_8h.html',1,'']]],
+  ['weak_5frate_5flibrary_2eh_4',['weak_rate_library.h',['../weak__rate__library_8h.html',1,'']]],
+  ['weak_5ftypes_2eh_5',['weak_types.h',['../weak__types_8h.html',1,'']]]
+];
diff --git a/docs/html/search/functions_0.js b/docs/html/search/functions_0.js
index 9e2f6c81..d96e3dbe 100644
--- a/docs/html/search/functions_0.js
+++ b/docs/html/search/functions_0.js
@@ -1,11 +1,14 @@
 var searchData=
 [
-  ['abs_5fstype_5fregister_5fdynamic_5fengine_5fbindings_0',['abs_stype_register_dynamic_engine_bindings',['../engine_2bindings_8cpp.html#a4066aaf2dca39ee1ed37ad53169f1cdf',1,'abs_stype_register_dynamic_engine_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a4066aaf2dca39ee1ed37ad53169f1cdf',1,'abs_stype_register_dynamic_engine_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['abs_5fstype_5fregister_5fengine_5fbindings_1',['abs_stype_register_engine_bindings',['../engine_2bindings_8cpp.html#a01ff627d4ef6a21b3323cd383dd29841',1,'abs_stype_register_engine_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a01ff627d4ef6a21b3323cd383dd29841',1,'abs_stype_register_engine_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['abs_5fstype_5fregister_5fdynamic_5fengine_5fbindings_0',['abs_stype_register_dynamic_engine_bindings',['../engine_2bindings_8cpp.html#a7ba5eb780fc02dab2b7be388ffa084f8',1,'abs_stype_register_dynamic_engine_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a7ba5eb780fc02dab2b7be388ffa084f8',1,'abs_stype_register_dynamic_engine_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['abs_5fstype_5fregister_5fengine_5fbindings_1',['abs_stype_register_engine_bindings',['../engine_2bindings_8cpp.html#aef9864cec8e0891ee46c8a0d76de2c93',1,'abs_stype_register_engine_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#aef9864cec8e0891ee46c8a0d76de2c93',1,'abs_stype_register_engine_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
   ['adaptiveengineview_2',['AdaptiveEngineView',['../classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455',1,'gridfire::AdaptiveEngineView']]],
-  ['add_5freaction_3',['add_reaction',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a14a24cb8ea25a1514134acc51197f1de',1,'gridfire::reaction::LogicalReaction::add_reaction()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a339dbbf883b6ae20e33d9782d8376bcf',1,'gridfire::reaction::TemplatedReactionSet::add_reaction()']]],
-  ['all_5fspecies_4',['all_species',['../classgridfire_1_1reaction_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224',1,'gridfire::reaction::Reaction::all_species()'],['../classgridfire_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224',1,'gridfire::Reaction::all_species()']]],
-  ['analyzetimescalepoolconnectivity_5',['analyzeTimescalePoolConnectivity',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#af13e764c118a6cc51847384e9c70e05b',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['approx8network_6',['Approx8Network',['../classgridfire_1_1approx8_1_1_approx8_network.html#a65066078081c544be4e56e25eb407c8b',1,'gridfire::approx8::Approx8Network']]],
-  ['atomicreverserate_7',['AtomicReverseRate',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf',1,'gridfire::GraphEngine::AtomicReverseRate']]]
+  ['add_5freaction_3',['add_reaction',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a69508797ca0793f6d3f58de4e0b97667',1,'gridfire::reaction::LogicalReaclibReaction::add_reaction()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1',1,'gridfire::reaction::ReactionSet::add_reaction(const Reaction &amp;reaction)'],['../classgridfire_1_1reaction_1_1_reaction_set.html#ad7e95562ea0860bf492b447341f41fb5',1,'gridfire::reaction::ReactionSet::add_reaction(std::unique_ptr&lt; Reaction &gt; &amp;&amp;reaction)'],['../classgridfire_1_1_reaction_set.html#ad9dbc77e93467c95ebda908b53e9a9d1',1,'gridfire::ReactionSet::add_reaction(const Reaction &amp;reaction)'],['../classgridfire_1_1_reaction_set.html#ad7e95562ea0860bf492b447341f41fb5',1,'gridfire::ReactionSet::add_reaction(std::unique_ptr&lt; Reaction &gt; &amp;&amp;reaction)']]],
+  ['all_5fspecies_4',['all_species',['../classgridfire_1_1reaction_1_1_reaction.html#aa13cd9097229fcc99128d9286b8f17e6',1,'gridfire::reaction::Reaction::all_species()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a445777acbbee2032d83a256181a90e3c',1,'gridfire::reaction::ReaclibReaction::all_species()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a6e567323ca019eadcbb9dbb814ebeb0b',1,'gridfire::rates::weak::WeakReaction::all_species()'],['../classgridfire_1_1_reaction.html#ace0b2bee91702e0ab97b6fc74999d6f0',1,'gridfire::Reaction::all_species()']]],
+  ['analyzetimescalepoolconnectivity_5',['analyzeTimescalePoolConnectivity',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a05e45017bbb772c586f483bd527004ee',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['andtrigger_6',['AndTrigger',['../classgridfire_1_1trigger_1_1_and_trigger.html#a969738baf0bda97664715937d4bc403e',1,'gridfire::trigger::AndTrigger']]],
+  ['approx8network_7',['Approx8Network',['../classgridfire_1_1approx8_1_1_approx8_network.html#a65066078081c544be4e56e25eb407c8b',1,'gridfire::approx8::Approx8Network']]],
+  ['atomicreverserate_8',['AtomicReverseRate',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf',1,'gridfire::GraphEngine::AtomicReverseRate']]],
+  ['atomicweakrate_9',['AtomicWeakRate',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a46d76ca50ee00198a9f4a873c6ceb874',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate']]],
+  ['available_5fisotopes_10',['available_isotopes',['../classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a976f84b6f6e33b5f3dd733a771afd7ba',1,'gridfire::rates::weak::WeakRateInterpolator']]]
 ];
diff --git a/docs/html/search/functions_1.js b/docs/html/search/functions_1.js
index 288b8ecd..c5369979 100644
--- a/docs/html/search/functions_1.js
+++ b/docs/html/search/functions_1.js
@@ -1,7 +1,8 @@
 var searchData=
 [
-  ['begin_0',['begin',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a4ae3806e5e1a802b86a6de292d043476',1,'gridfire::reaction::LogicalReaction::begin()'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a5d410de1053f8028faed1f0d0a6083f5',1,'gridfire::reaction::LogicalReaction::begin() const'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a87257704009fcd57b553f86cdaacb597',1,'gridfire::reaction::TemplatedReactionSet::begin()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#aee42bb25973dadc6629bdb5cb1db6369',1,'gridfire::reaction::TemplatedReactionSet::begin() const']]],
+  ['begin_0',['begin',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a1353d7d2208497b38799bf69f574c275',1,'gridfire::reaction::LogicalReaclibReaction::begin()'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a211b1332dc12a1fee942523dbc688272',1,'gridfire::reaction::LogicalReaclibReaction::begin() const'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613',1,'gridfire::reaction::ReactionSet::begin()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#adb73fe9ff0178359409e2bea46a620c2',1,'gridfire::reaction::ReactionSet::begin() const'],['../classgridfire_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613',1,'gridfire::ReactionSet::begin()'],['../classgridfire_1_1_reaction_set.html#adb73fe9ff0178359409e2bea46a620c2',1,'gridfire::ReactionSet::begin() const']]],
   ['bin_1',['bin',['../structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3',1,'gridfire::QSECacheKey']]],
-  ['build_5freaclib_5fnuclear_5fnetwork_2',['build_reaclib_nuclear_network',['../namespacegridfire.html#aedddb89e400a6111f69bfe0c3fd4214e',1,'gridfire::build_reaclib_nuclear_network(const fourdst::composition::Composition &amp;composition, BuildDepthType maxLayers=NetworkBuildDepth::Full, bool reverse=false)'],['../namespacegridfire.html#a745c6568723947f8e1ff874c9d3f4733',1,'gridfire::build_reaclib_nuclear_network(const Composition &amp;composition, BuildDepthType maxLayers, bool reverse)']]],
-  ['buildconnectivitygraph_3',['buildConnectivityGraph',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aae0865e361dfeb23984d70409fdd9f39',1,'gridfire::MultiscalePartitioningEngineView::buildConnectivityGraph(const std::unordered_set&lt; size_t &gt; &amp;fast_reaction_indices) const'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ae3875c61dc916c0982ed122c2e272d94',1,'gridfire::MultiscalePartitioningEngineView::buildConnectivityGraph(const std::vector&lt; size_t &gt; &amp;species_pool) const']]]
+  ['build_5fnuclear_5fnetwork_2',['build_nuclear_network',['../namespacegridfire.html#a58a036e8883e75a8abd3e18798563f71',1,'gridfire']]],
+  ['build_5freaclib_5fnuclear_5fnetwork_3',['build_reaclib_nuclear_network',['../namespacegridfire.html#a384323338f13166d87c7ac047434bd38',1,'gridfire']]],
+  ['buildconnectivitygraph_4',['buildConnectivityGraph',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a5d1c11f3c0883385833462dd088f6f89',1,'gridfire::MultiscalePartitioningEngineView']]]
 ];
diff --git a/docs/html/search/functions_10.js b/docs/html/search/functions_10.js
index 81772778..2d36414b 100644
--- a/docs/html/search/functions_10.js
+++ b/docs/html/search/functions_10.js
@@ -1,34 +1,26 @@
 var searchData=
 [
-  ['rate_5ffit_0',['rate_fit',['../namespacegridfire_1_1approx8.html#aed8175751b4920a53922f87f8c0e63c4',1,'gridfire::approx8']]],
-  ['ratecoefficients_1',['rateCoefficients',['../classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e',1,'gridfire::reaction::Reaction::rateCoefficients()'],['../classgridfire_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e',1,'gridfire::Reaction::rateCoefficients()']]],
-  ['rauscherthielemannpartitionfunction_2',['RauscherThielemannPartitionFunction',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
-  ['reactant_5fspecies_3',['reactant_species',['../classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923',1,'gridfire::reaction::Reaction::reactant_species()'],['../classgridfire_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923',1,'gridfire::Reaction::reactant_species()']]],
-  ['reactants_4',['reactants',['../classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b',1,'gridfire::reaction::Reaction::reactants()'],['../classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b',1,'gridfire::Reaction::reactants()']]],
-  ['reaction_5',['Reaction',['../classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c',1,'gridfire::reaction::Reaction::Reaction()'],['../classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c',1,'gridfire::Reaction::Reaction()']]],
-  ['rebuild_6',['rebuild',['../classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf',1,'gridfire::DynamicEngine::rebuild()'],['../classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490',1,'gridfire::GraphEngine::rebuild()'],['../class_py_dynamic_engine.html#a3d30a9116825ab2c5c209bc2712126bc',1,'PyDynamicEngine::rebuild()']]],
-  ['recordadtape_7',['recordADTape',['../classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889',1,'gridfire::GraphEngine']]],
-  ['register_5fbase_5fengine_5fbindings_8',['register_base_engine_bindings',['../engine_2bindings_8cpp.html#a884aac3c3f2e8c62843c69329052d642',1,'register_base_engine_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a884aac3c3f2e8c62843c69329052d642',1,'register_base_engine_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5fcomposite_5fpartition_5fbindings_9',['register_composite_partition_bindings',['../partition_2bindings_8cpp.html#afded1a99d32cbf8745a42e0a81891e18',1,'register_composite_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#afded1a99d32cbf8745a42e0a81891e18',1,'register_composite_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5fengine_5fbindings_10',['register_engine_bindings',['../engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c',1,'register_engine_bindings(py::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a73a2ec4150b3954550f16b97102ec993',1,'register_engine_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
-  ['register_5fengine_5fview_5fbindings_11',['register_engine_view_bindings',['../engine_2bindings_8cpp.html#a74a027923ac27f235cf565f8d2a355bd',1,'register_engine_view_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a74a027923ac27f235cf565f8d2a355bd',1,'register_engine_view_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5fexception_5fbindings_12',['register_exception_bindings',['../exceptions_2bindings_8cpp.html#a15a0d54e4fe015a87d9f7a63284c2958',1,'register_exception_bindings(py::module &amp;m):&#160;bindings.cpp'],['../exceptions_2bindings_8h.html#a01725278af607be0d8f5a2d892a5ef73',1,'register_exception_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
-  ['register_5fexpectation_5fbindings_13',['register_expectation_bindings',['../expectations_2bindings_8cpp.html#ac6720822f6ad76636adbc1ae6febc2c2',1,'register_expectation_bindings(py::module &amp;m):&#160;bindings.cpp'],['../expectations_2bindings_8h.html#a12e0304a6d29af179118a29c8ea93dc0',1,'register_expectation_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
-  ['register_5fground_5fstate_5fpartition_5fbindings_14',['register_ground_state_partition_bindings',['../partition_2bindings_8cpp.html#ac36d0a5e8cb0122888fd218a143c7630',1,'register_ground_state_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#ac36d0a5e8cb0122888fd218a143c7630',1,'register_ground_state_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5fio_5fbindings_15',['register_io_bindings',['../io_2bindings_8cpp.html#a7f552627cbe94906e0ee98b121e77862',1,'register_io_bindings(py::module &amp;m):&#160;bindings.cpp'],['../io_2bindings_8h.html#a1d91b8298302b9f5401bf06c22651df4',1,'register_io_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
-  ['register_5fpartition_5fbindings_16',['register_partition_bindings',['../partition_2bindings_8cpp.html#a2806baaec82e0e6d66b80348584e08fd',1,'register_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#a2806baaec82e0e6d66b80348584e08fd',1,'register_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5fpartition_5ftypes_5fbindings_17',['register_partition_types_bindings',['../partition_2bindings_8cpp.html#a4c0db94b56a3b02482ac4fd654680cca',1,'register_partition_types_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#a4c0db94b56a3b02482ac4fd654680cca',1,'register_partition_types_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5frauscher_5fthielemann_5fpartition_5fbindings_18',['register_rauscher_thielemann_partition_bindings',['../partition_2bindings_8cpp.html#a4e56b30b36165067cf413787a55b9ecb',1,'register_rauscher_thielemann_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#a4e56b30b36165067cf413787a55b9ecb',1,'register_rauscher_thielemann_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5frauscher_5fthielemann_5fpartition_5fdata_5frecord_5fbindings_19',['register_rauscher_thielemann_partition_data_record_bindings',['../partition_2bindings_8cpp.html#ae405682b0e35624397583048f4d40f75',1,'register_rauscher_thielemann_partition_data_record_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#ae405682b0e35624397583048f4d40f75',1,'register_rauscher_thielemann_partition_data_record_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5freaction_5fbindings_20',['register_reaction_bindings',['../reaction_2bindings_8cpp.html#ae174b115814ec42920a799881cef1efa',1,'register_reaction_bindings(py::module &amp;m):&#160;bindings.cpp'],['../reaction_2bindings_8h.html#a221d509fd54278898e2cbb73663f53d0',1,'register_reaction_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
-  ['register_5fscreening_5fbindings_21',['register_screening_bindings',['../screening_2bindings_8cpp.html#a4fcef69d9382bfbc315cb061038627f4',1,'register_screening_bindings(py::module &amp;m):&#160;bindings.cpp'],['../screening_2bindings_8h.html#a9e1a938ffee0a1b9d913fa4968865b1b',1,'register_screening_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
-  ['register_5fsolver_5fbindings_22',['register_solver_bindings',['../solver_2bindings_8cpp.html#a722d28831d82cd075081fcf4b403479d',1,'register_solver_bindings(const py::module &amp;m):&#160;bindings.cpp'],['../solver_2bindings_8h.html#a7ff40d9e08fcb5028e914045447d46d3',1,'register_solver_bindings(const pybind11::module &amp;m):&#160;bindings.h']]],
-  ['register_5ftype_5fbindings_23',['register_type_bindings',['../types_2bindings_8cpp.html#a37d2e0b6a2605d063eec5e2a64e9bcc5',1,'register_type_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../types_2bindings_8h.html#a37d2e0b6a2605d063eec5e2a64e9bcc5',1,'register_type_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['register_5futils_5fbindings_24',['register_utils_bindings',['../utils_2bindings_8cpp.html#a7af842f50ca4a721518e716d0229697c',1,'register_utils_bindings(py::module &amp;m):&#160;bindings.cpp'],['../utils_2bindings_8h.html#a9eefca377142320755a869fafc6311c7',1,'register_utils_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
-  ['remove_5freaction_25',['remove_reaction',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a89c4c5af12aef7fbfc24316c88237e22',1,'gridfire::reaction::TemplatedReactionSet']]],
-  ['rescueedgespeciesdestructionchannel_26',['rescueEdgeSpeciesDestructionChannel',['../classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f',1,'gridfire::AdaptiveEngineView']]],
-  ['reservejacobianmatrix_27',['reserveJacobianMatrix',['../classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5',1,'gridfire::GraphEngine']]],
-  ['rev_5fsparse_5fjac_28',['rev_sparse_jac',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4',1,'gridfire::GraphEngine::AtomicReverseRate']]],
-  ['reverse_29',['reverse',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e',1,'gridfire::GraphEngine::AtomicReverseRate']]],
-  ['rhsmanager_30',['RHSManager',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a4ba187f1a0deca0a82ac3c9a14883855',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]]
+  ['selectpartitionfunction_0',['selectPartitionFunction',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b',1,'gridfire::partition::CompositePartitionFunction']]],
+  ['selectscreeningmodel_1',['selectScreeningModel',['../namespacegridfire_1_1screening.html#a6ca8556d27ac373e176f5b23437c416e',1,'gridfire::screening']]],
+  ['set_5fcallback_2',['set_callback',['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a4d97ee85933d5e5f90d4194bb021a1dc',1,'gridfire::solver::NetworkSolverStrategy::set_callback()'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a77638ef3d2279009e5a57bbd3f0eb63b',1,'gridfire::solver::CVODESolverStrategy::set_callback()'],['../class_py_dynamic_network_solver_strategy.html#a112a7babc03858a69d6994a7155370d3',1,'PyDynamicNetworkSolverStrategy::set_callback()']]],
+  ['set_5fstdout_5flogging_5fenabled_3',['set_stdout_logging_enabled',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a46dacb6eb075f2aadac0e56972deeaa3',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['setformat_4',['setFormat',['../classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4',1,'gridfire::Network']]],
+  ['setnetworkreactions_5',['setNetworkReactions',['../classgridfire_1_1_dynamic_engine.html#a49025489901e22a20cdf99b455ff2ff0',1,'gridfire::DynamicEngine::setNetworkReactions()'],['../classgridfire_1_1_graph_engine.html#a52288e2629609c8438a3c9bc3f910016',1,'gridfire::GraphEngine::setNetworkReactions()'],['../classgridfire_1_1_adaptive_engine_view.html#adedc8547568d643473bdfcc86040b488',1,'gridfire::AdaptiveEngineView::setNetworkReactions()'],['../classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9',1,'gridfire::DefinedEngineView::setNetworkReactions()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#af99f5e4871808188d00379c1c35868fe',1,'gridfire::MultiscalePartitioningEngineView::setNetworkReactions()'],['../class_py_dynamic_engine.html#af469cba3be850d53f659ec173f0eb4e4',1,'PyDynamicEngine::setNetworkReactions()']]],
+  ['setprecomputation_6',['setPrecomputation',['../classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1',1,'gridfire::GraphEngine']]],
+  ['setscreeningmodel_7',['setScreeningModel',['../classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd',1,'gridfire::DynamicEngine::setScreeningModel()'],['../classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c',1,'gridfire::GraphEngine::setScreeningModel()'],['../classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b',1,'gridfire::AdaptiveEngineView::setScreeningModel()'],['../classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258',1,'gridfire::DefinedEngineView::setScreeningModel()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f',1,'gridfire::MultiscalePartitioningEngineView::setScreeningModel()'],['../class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac',1,'PyDynamicEngine::setScreeningModel()']]],
+  ['setstiff_8',['setStiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#aefed972081514c29cdaaa1efd857ad8d',1,'gridfire::approx8::Approx8Network::setStiff()'],['../classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe',1,'gridfire::Network::setStiff()']]],
+  ['setusereversereactions_9',['setUseReverseReactions',['../classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197',1,'gridfire::GraphEngine']]],
+  ['simplereactionlistfileparser_10',['SimpleReactionListFileParser',['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993',1,'gridfire::io::SimpleReactionListFileParser']]],
+  ['simulationtimetrigger_11',['SimulationTimeTrigger',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a235f84a37370a1ca2226fb881b4051c7',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger']]],
+  ['size_12',['size',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a4c58951d9f7ab252717c226b0da80a9d',1,'gridfire::reaction::LogicalReaclibReaction::size()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf',1,'gridfire::reaction::ReactionSet::size()'],['../classgridfire_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf',1,'gridfire::ReactionSet::size()']]],
+  ['solveqseabundances_13',['solveQSEAbundances',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a40ce2c18063cd56cffd58419b9ae96bf',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['sourcelabel_14',['sourceLabel',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a96d4ab87de02e9b0be3c248e2e955b4b',1,'gridfire::reaction::ReaclibReaction']]],
+  ['sources_15',['sources',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad4979f437dc787a5475c3a029804ed99',1,'gridfire::reaction::LogicalReaclibReaction']]],
+  ['staleengineerror_16',['StaleEngineError',['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50',1,'gridfire::exceptions::StaleEngineError::StaleEngineError()'],['../structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10',1,'gridfire::expectations::StaleEngineError::StaleEngineError()']]],
+  ['staleenginetrigger_17',['StaleEngineTrigger',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d',1,'gridfire::exceptions::StaleEngineTrigger']]],
+  ['stepderivatives_18',['StepDerivatives',['../structgridfire_1_1_step_derivatives.html#a26deeb236e77eddb0119ad368a5d8f1c',1,'gridfire::StepDerivatives']]],
+  ['stoichiometry_19',['stoichiometry',['../classgridfire_1_1reaction_1_1_reaction.html#ad49f4cad024db72c966d949c75f1ce4d',1,'gridfire::reaction::Reaction::stoichiometry() const =0'],['../classgridfire_1_1reaction_1_1_reaction.html#ab7888b57507d6d27de6e5fcaea40fff5',1,'gridfire::reaction::Reaction::stoichiometry(const fourdst::atomic::Species &amp;species) const =0'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a57b2695d152360a6ba08776cc760e3a1',1,'gridfire::reaction::ReaclibReaction::stoichiometry(const fourdst::atomic::Species &amp;species) const override'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0f629cbfe95dc5643b5e3724be0db2f9',1,'gridfire::reaction::ReaclibReaction::stoichiometry() const override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a8bf7dc26d9f1375625df99bceba08a44',1,'gridfire::rates::weak::WeakReaction::stoichiometry() const override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1f4acfdb39bb861aaee9f3f28cfc406e',1,'gridfire::rates::weak::WeakReaction::stoichiometry(const fourdst::atomic::Species &amp;species) const override'],['../classgridfire_1_1_reaction.html#a55b7f61d9bde45f2ca485c1b07a05950',1,'gridfire::Reaction::stoichiometry() const=0'],['../classgridfire_1_1_reaction.html#af0a893603aa88f7d7d205b9b969af487',1,'gridfire::Reaction::stoichiometry(const fourdst::atomic::Species &amp;species) const=0']]],
+  ['sum_5fproduct_20',['sum_product',['../namespacegridfire_1_1approx8.html#aafd24448743672021dd4507316060817',1,'gridfire::approx8']]],
+  ['supports_21',['supports',['../classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c',1,'gridfire::partition::CompositePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5',1,'gridfire::partition::PartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd',1,'gridfire::partition::GroundStatePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5',1,'gridfire::partition::RauscherThielemannPartitionFunction::supports()'],['../class_py_partition_function.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8',1,'PyPartitionFunction::supports()']]],
+  ['syncinternalmaps_22',['syncInternalMaps',['../classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f',1,'gridfire::GraphEngine']]]
 ];
diff --git a/docs/html/search/functions_11.js b/docs/html/search/functions_11.js
index 4f7b5926..65e0360b 100644
--- a/docs/html/search/functions_11.js
+++ b/docs/html/search/functions_11.js
@@ -1,23 +1,11 @@
 var searchData=
 [
-  ['selectpartitionfunction_0',['selectPartitionFunction',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b',1,'gridfire::partition::CompositePartitionFunction']]],
-  ['selectscreeningmodel_1',['selectScreeningModel',['../namespacegridfire_1_1screening.html#a6ca8556d27ac373e176f5b23437c416e',1,'gridfire::screening']]],
-  ['set_5fcallback_2',['set_callback',['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a4d97ee85933d5e5f90d4194bb021a1dc',1,'gridfire::solver::NetworkSolverStrategy::set_callback()'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a6bb0738eef5669b3ad83a3c65a0d1e96',1,'gridfire::solver::DirectNetworkSolver::set_callback()'],['../class_py_dynamic_network_solver_strategy.html#a112a7babc03858a69d6994a7155370d3',1,'PyDynamicNetworkSolverStrategy::set_callback()']]],
-  ['setformat_3',['setFormat',['../classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4',1,'gridfire::Network']]],
-  ['setnetworkreactions_4',['setNetworkReactions',['../classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f',1,'gridfire::DynamicEngine::setNetworkReactions()'],['../classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0',1,'gridfire::GraphEngine::setNetworkReactions()'],['../classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672',1,'gridfire::AdaptiveEngineView::setNetworkReactions()'],['../classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d',1,'gridfire::DefinedEngineView::setNetworkReactions()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#acb5fa7f03cd89b8c1b6b9ffdf3abb12e',1,'gridfire::MultiscalePartitioningEngineView::setNetworkReactions()'],['../class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6',1,'PyDynamicEngine::setNetworkReactions()']]],
-  ['setprecomputation_5',['setPrecomputation',['../classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1',1,'gridfire::GraphEngine']]],
-  ['setscreeningmodel_6',['setScreeningModel',['../classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd',1,'gridfire::DynamicEngine::setScreeningModel()'],['../classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c',1,'gridfire::GraphEngine::setScreeningModel()'],['../classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b',1,'gridfire::AdaptiveEngineView::setScreeningModel()'],['../classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258',1,'gridfire::DefinedEngineView::setScreeningModel()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f',1,'gridfire::MultiscalePartitioningEngineView::setScreeningModel()'],['../class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac',1,'PyDynamicEngine::setScreeningModel()']]],
-  ['setstiff_7',['setStiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#aefed972081514c29cdaaa1efd857ad8d',1,'gridfire::approx8::Approx8Network::setStiff()'],['../classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe',1,'gridfire::Network::setStiff()']]],
-  ['setusereversereactions_8',['setUseReverseReactions',['../classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197',1,'gridfire::GraphEngine']]],
-  ['simplereactionlistfileparser_9',['SimpleReactionListFileParser',['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993',1,'gridfire::io::SimpleReactionListFileParser']]],
-  ['size_10',['size',['../classgridfire_1_1reaction_1_1_logical_reaction.html#afa41050855b842c63db16c94d2e9b897',1,'gridfire::reaction::LogicalReaction::size()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2',1,'gridfire::reaction::TemplatedReactionSet::size()']]],
-  ['solveqseabundances_11',['solveQSEAbundances',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c5fcb8e3396d74359fd601554c9ffa9',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['sourcelabel_12',['sourceLabel',['../classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0',1,'gridfire::reaction::Reaction::sourceLabel()'],['../classgridfire_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0',1,'gridfire::Reaction::sourceLabel()']]],
-  ['sources_13',['sources',['../classgridfire_1_1reaction_1_1_logical_reaction.html#add094eda0e71126f8443698d7f3317f4',1,'gridfire::reaction::LogicalReaction']]],
-  ['staleengineerror_14',['StaleEngineError',['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50',1,'gridfire::exceptions::StaleEngineError::StaleEngineError()'],['../structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10',1,'gridfire::expectations::StaleEngineError::StaleEngineError()']]],
-  ['staleenginetrigger_15',['StaleEngineTrigger',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d',1,'gridfire::exceptions::StaleEngineTrigger']]],
-  ['stoichiometry_16',['stoichiometry',['../classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac',1,'gridfire::reaction::Reaction::stoichiometry(const fourdst::atomic::Species &amp;species) const'],['../classgridfire_1_1reaction_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3',1,'gridfire::reaction::Reaction::stoichiometry() const'],['../classgridfire_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac',1,'gridfire::Reaction::stoichiometry(const fourdst::atomic::Species &amp;species) const'],['../classgridfire_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3',1,'gridfire::Reaction::stoichiometry() const']]],
-  ['sum_5fproduct_17',['sum_product',['../namespacegridfire_1_1approx8.html#aafd24448743672021dd4507316060817',1,'gridfire::approx8']]],
-  ['supports_18',['supports',['../classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c',1,'gridfire::partition::CompositePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5',1,'gridfire::partition::PartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd',1,'gridfire::partition::GroundStatePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5',1,'gridfire::partition::RauscherThielemannPartitionFunction::supports()'],['../class_py_partition_function.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8',1,'PyPartitionFunction::supports()']]],
-  ['syncinternalmaps_19',['syncInternalMaps',['../classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f',1,'gridfire::GraphEngine']]]
+  ['temperature_0',['temperature',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9',1,'gridfire::exceptions::StaleEngineTrigger']]],
+  ['timestepcollapsetrigger_1',['TimestepCollapseTrigger',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a171e6dee7f7d8275b3e8875eaeb0850d',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::TimestepCollapseTrigger(double threshold, bool relative)'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ae47a4f822f92774f6dc780ae74f12066',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::TimestepCollapseTrigger(double threshold, bool relative, size_t windowSize)']]],
+  ['timestepcontext_2',['TimestepContext',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a406b36ce5f192c855eb3c8dcf0fde0bd',1,'gridfire::solver::CVODESolverStrategy::TimestepContext']]],
+  ['tostring_3',['toString',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a165b68f0ebb30cda5ffaafa7c0f27617',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+  ['totalsteps_4',['totalSteps',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408',1,'gridfire::exceptions::StaleEngineTrigger']]],
+  ['trim_5fwhitespace_5',['trim_whitespace',['../namespacegridfire.html#a8b245f261cd8d1711ae8d593b054cf98',1,'gridfire::trim_whitespace()'],['../reaclib_8cpp.html#a2c6902cf3e699a1a65e871efa878a6ab',1,'trim_whitespace():&#160;reaclib.cpp']]],
+  ['triple_5falpha_5frate_6',['triple_alpha_rate',['../namespacegridfire_1_1approx8.html#a2715e1a6421717991814892046b896e3',1,'gridfire::approx8']]],
+  ['type_7',['type',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88',1,'gridfire::partition::CompositePartitionFunction::type()'],['../classgridfire_1_1partition_1_1_partition_function.html#ab0c67985a972707eac0ebc64417dfb97',1,'gridfire::partition::PartitionFunction::type()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250',1,'gridfire::partition::GroundStatePartitionFunction::type()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3aa478acf12e09b6dd268f744071b2a0',1,'gridfire::partition::RauscherThielemannPartitionFunction::type()'],['../classgridfire_1_1reaction_1_1_reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7',1,'gridfire::reaction::Reaction::type()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a3c0fbdd07f9a837bd031c5bdc58e0e8f',1,'gridfire::reaction::ReaclibReaction::type()'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#acbfa2d4e23dff6641be21cc1e754be15',1,'gridfire::reaction::LogicalReaclibReaction::type()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aade329265a26bdc005c0793ba7a36ab2',1,'gridfire::rates::weak::WeakReaction::type()'],['../class_py_partition_function.html#a07f4d0ff83822dd2800897161d2a3717',1,'PyPartitionFunction::type()'],['../classgridfire_1_1_reaction.html#a186856dc2ce85d8cc4db43c7164b6afa',1,'gridfire::Reaction::type()']]]
 ];
diff --git a/docs/html/search/functions_12.js b/docs/html/search/functions_12.js
index 7bebc00f..17e9e6cb 100644
--- a/docs/html/search/functions_12.js
+++ b/docs/html/search/functions_12.js
@@ -1,10 +1,5 @@
 var searchData=
 [
-  ['temperature_0',['temperature',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9',1,'gridfire::exceptions::StaleEngineTrigger']]],
-  ['templatedreactionset_1',['TemplatedReactionSet',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a54c8cd7c34564277fe28eefc623f666e',1,'gridfire::reaction::TemplatedReactionSet::TemplatedReactionSet(std::vector&lt; ReactionT &gt; reactions)'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a9def4c9a3a7a03625b7c467fe7440428',1,'gridfire::reaction::TemplatedReactionSet::TemplatedReactionSet()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ada1d1880be53b81a9ed7b966fd6ade5a',1,'gridfire::reaction::TemplatedReactionSet::TemplatedReactionSet(const TemplatedReactionSet&lt; ReactionT &gt; &amp;other)']]],
-  ['timestepcontext_2',['TimestepContext',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#aea1385260976dff133404db5b453ba98',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['totalsteps_3',['totalSteps',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408',1,'gridfire::exceptions::StaleEngineTrigger']]],
-  ['trim_5fwhitespace_4',['trim_whitespace',['../namespacegridfire.html#a8b245f261cd8d1711ae8d593b054cf98',1,'gridfire::trim_whitespace()'],['../reaclib_8cpp.html#a2c6902cf3e699a1a65e871efa878a6ab',1,'trim_whitespace():&#160;reaclib.cpp']]],
-  ['triple_5falpha_5frate_5',['triple_alpha_rate',['../namespacegridfire_1_1approx8.html#a2715e1a6421717991814892046b896e3',1,'gridfire::approx8']]],
-  ['type_6',['type',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88',1,'gridfire::partition::CompositePartitionFunction::type()'],['../classgridfire_1_1partition_1_1_partition_function.html#ab0c67985a972707eac0ebc64417dfb97',1,'gridfire::partition::PartitionFunction::type()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250',1,'gridfire::partition::GroundStatePartitionFunction::type()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3aa478acf12e09b6dd268f744071b2a0',1,'gridfire::partition::RauscherThielemannPartitionFunction::type()'],['../class_py_partition_function.html#a07f4d0ff83822dd2800897161d2a3717',1,'PyPartitionFunction::type()']]]
+  ['unabletosetnetworkreactionserror_0',['UnableToSetNetworkReactionsError',['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#acb3183c3dea755a8a26b00d638183c30',1,'gridfire::exceptions::UnableToSetNetworkReactionsError']]],
+  ['update_1',['update',['../classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a',1,'gridfire::DynamicEngine::update()'],['../classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6',1,'gridfire::GraphEngine::update()'],['../classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd',1,'gridfire::AdaptiveEngineView::update()'],['../classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae',1,'gridfire::DefinedEngineView::update()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8',1,'gridfire::MultiscalePartitioningEngineView::update()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a468bf58f66417493501c59d7a8aabc98',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::update()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a179cb09a91d5c638d7a347137b208767',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::update()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#af6bff6a484e8729445c26620b489665d',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::update()'],['../classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc',1,'gridfire::trigger::Trigger::update()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#a62f7dbbcf0554caa68e3d778580b3c1d',1,'gridfire::trigger::AndTrigger::update()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#a775dac97d109c5fcd5c0287ca98f308c',1,'gridfire::trigger::OrTrigger::update()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#a846432abf33c7602af0fbb5475c0ad32',1,'gridfire::trigger::NotTrigger::update()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0dd783afab7ef6005f0241f9de7b31f6',1,'gridfire::trigger::EveryNthTrigger::update()'],['../class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8',1,'PyDynamicEngine::update()']]]
 ];
diff --git a/docs/html/search/functions_13.js b/docs/html/search/functions_13.js
index b7e0ec20..4cd9179d 100644
--- a/docs/html/search/functions_13.js
+++ b/docs/html/search/functions_13.js
@@ -1,5 +1,8 @@
 var searchData=
 [
-  ['unabletosetnetworkreactionserror_0',['UnableToSetNetworkReactionsError',['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#acb3183c3dea755a8a26b00d638183c30',1,'gridfire::exceptions::UnableToSetNetworkReactionsError']]],
-  ['update_1',['update',['../classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a',1,'gridfire::DynamicEngine::update()'],['../classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6',1,'gridfire::GraphEngine::update()'],['../classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd',1,'gridfire::AdaptiveEngineView::update()'],['../classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae',1,'gridfire::DefinedEngineView::update()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8',1,'gridfire::MultiscalePartitioningEngineView::update()'],['../class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8',1,'PyDynamicEngine::update()']]]
+  ['validateconservation_0',['validateConservation',['../classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be',1,'gridfire::GraphEngine']]],
+  ['validategroupswithfluxanalysis_1',['validateGroupsWithFluxAnalysis',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ad94c6fa2281d9104471631c6b90f411e',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['validatenetworkstate_2',['validateNetworkState',['../classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0',1,'gridfire::DefinedEngineView']]],
+  ['validatestate_3',['validateState',['../classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40',1,'gridfire::AdaptiveEngineView']]],
+  ['values_4',['values',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6f5611ca669567534df1bd793e90d2e3',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]]
 ];
diff --git a/docs/html/search/functions_14.js b/docs/html/search/functions_14.js
index a57cb465..89832967 100644
--- a/docs/html/search/functions_14.js
+++ b/docs/html/search/functions_14.js
@@ -1,8 +1,9 @@
 var searchData=
 [
-  ['validateconservation_0',['validateConservation',['../classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be',1,'gridfire::GraphEngine']]],
-  ['validategroupswithfluxanalysis_1',['validateGroupsWithFluxAnalysis',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aa55ed182301d216264daae3e6dfd8917',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['validatenetworkstate_2',['validateNetworkState',['../classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0',1,'gridfire::DefinedEngineView']]],
-  ['validatestate_3',['validateState',['../classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40',1,'gridfire::AdaptiveEngineView']]],
-  ['values_4',['values',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6d13bb5294f5dae7e2eb1d26720f944e',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]]
+  ['weak_5freaction_5ftype_5fname_0',['weak_reaction_type_name',['../namespacegridfire_1_1rates_1_1weak.html#a81f6133710abef28d9d2b030fdbaaeef',1,'gridfire::rates::weak']]],
+  ['weakrateinterpolator_1',['WeakRateInterpolator',['../classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a1efafe82d25d36b93a60a6fccbd5ca3d',1,'gridfire::rates::weak::WeakRateInterpolator']]],
+  ['weakreaction_2',['WeakReaction',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a222c0662bf5323037c9fdddfb929d4f7',1,'gridfire::rates::weak::WeakReaction']]],
+  ['weakreactionmap_3',['WeakReactionMap',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#aecc8c1b92d63da87827879ad5330c11e',1,'gridfire::rates::weak::WeakReactionMap']]],
+  ['what_4',['what',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aac4899d001338688def2b809b55bb2ba',1,'gridfire::exceptions::StaleEngineTrigger::what()'],['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4',1,'gridfire::exceptions::StaleEngineError::what()'],['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#afe87ef508f5b20ca99ec70510747caff',1,'gridfire::exceptions::FailedToPartitionEngineError::what()'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1',1,'gridfire::exceptions::NetworkResizedError::what()'],['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69',1,'gridfire::exceptions::UnableToSetNetworkReactionsError::what()']]],
+  ['why_5',['why',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a9dfab0b765d3a4c362cecd860d59f58a',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::why()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3af973e466ba62ebf1e41c608355e327',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::why()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a22d8bc7aacbc388108225c26158e918c',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::why()'],['../classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea',1,'gridfire::trigger::Trigger::why()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#a01033721e8f5d90483d65c904399cf96',1,'gridfire::trigger::AndTrigger::why()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#a7bca0da16353f4b04a2f40fb29c07922',1,'gridfire::trigger::OrTrigger::why()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#abfb3eb7befba646ce9f11f36a63750ae',1,'gridfire::trigger::NotTrigger::why()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a3bf0d69122f801deca4b62db47262d9b',1,'gridfire::trigger::EveryNthTrigger::why()']]]
 ];
diff --git a/docs/html/search/functions_15.js b/docs/html/search/functions_15.js
index 61a09dec..ca45f9b1 100644
--- a/docs/html/search/functions_15.js
+++ b/docs/html/search/functions_15.js
@@ -1,4 +1,23 @@
 var searchData=
 [
-  ['what_0',['what',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aac4899d001338688def2b809b55bb2ba',1,'gridfire::exceptions::StaleEngineTrigger::what()'],['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4',1,'gridfire::exceptions::StaleEngineError::what()'],['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#afe87ef508f5b20ca99ec70510747caff',1,'gridfire::exceptions::FailedToPartitionEngineError::what()'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1',1,'gridfire::exceptions::NetworkResizedError::what()'],['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69',1,'gridfire::exceptions::UnableToSetNetworkReactionsError::what()']]]
+  ['_7eandtrigger_0',['~AndTrigger',['../classgridfire_1_1trigger_1_1_and_trigger.html#a2ee18348ca65cc1aa56eb41292a39bc5',1,'gridfire::trigger::AndTrigger']]],
+  ['_7ecolumnbase_1',['~ColumnBase',['../classgridfire_1_1utils_1_1_column_base.html#a704c1fc03271c14fc9f3da43612a1589',1,'gridfire::utils::ColumnBase']]],
+  ['_7ecvodesolverstrategy_2',['~CVODESolverStrategy',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aca2d01a907c3bb828f9f99ad05506578',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['_7eengine_3',['~Engine',['../classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037',1,'gridfire::Engine']]],
+  ['_7eengineerror_4',['~EngineError',['../structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897',1,'gridfire::expectations::EngineError']]],
+  ['_7eengineview_5',['~EngineView',['../classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74',1,'gridfire::EngineView']]],
+  ['_7eeverynthtrigger_6',['~EveryNthTrigger',['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae28e54330d575d9d1d3d8ebc6e7a6f75',1,'gridfire::trigger::EveryNthTrigger']]],
+  ['_7enetwork_7',['~Network',['../classgridfire_1_1_network.html#ab8d83289b62dda9b4e02f25311f85b79',1,'gridfire::Network']]],
+  ['_7enetworkfileparser_8',['~NetworkFileParser',['../classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3',1,'gridfire::io::NetworkFileParser']]],
+  ['_7enetworksolverstrategy_9',['~NetworkSolverStrategy',['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318',1,'gridfire::solver::NetworkSolverStrategy']]],
+  ['_7enottrigger_10',['~NotTrigger',['../classgridfire_1_1trigger_1_1_not_trigger.html#afa4173490171d1251cc1757b92841755',1,'gridfire::trigger::NotTrigger']]],
+  ['_7eortrigger_11',['~OrTrigger',['../classgridfire_1_1trigger_1_1_or_trigger.html#afe30f95de39c1375557d032b8a8111f9',1,'gridfire::trigger::OrTrigger']]],
+  ['_7epartitionfunction_12',['~PartitionFunction',['../classgridfire_1_1partition_1_1_partition_function.html#a197a0663dcfb4ab4be3b0e14b98391db',1,'gridfire::partition::PartitionFunction']]],
+  ['_7ereaclibreaction_13',['~ReaclibReaction',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae2b9b41a598c5f0dcd050b32985ea44e',1,'gridfire::reaction::ReaclibReaction']]],
+  ['_7ereaction_14',['~Reaction',['../classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a',1,'gridfire::reaction::Reaction::~Reaction()'],['../classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a',1,'gridfire::Reaction::~Reaction()']]],
+  ['_7escreeningmodel_15',['~ScreeningModel',['../classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7',1,'gridfire::screening::ScreeningModel']]],
+  ['_7esolvercontextbase_16',['~SolverContextBase',['../structgridfire_1_1solver_1_1_solver_context_base.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8',1,'gridfire::solver::SolverContextBase']]],
+  ['_7esolverplugininterface_17',['~SolverPluginInterface',['../class_solver_plugin_interface.html#a5611d046cd2fd4d4200785725854e39b',1,'SolverPluginInterface']]],
+  ['_7etrigger_18',['~Trigger',['../classgridfire_1_1trigger_1_1_trigger.html#a2c077ccbaf4de9f7068e50144391edda',1,'gridfire::trigger::Trigger']]],
+  ['_7eweakreactionmap_19',['~WeakReactionMap',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a73cc5a9d4a236091bbb40f22ed66b2f1',1,'gridfire::rates::weak::WeakReactionMap']]]
 ];
diff --git a/docs/html/search/functions_2.js b/docs/html/search/functions_2.js
index a3dc6679..4f286fcd 100644
--- a/docs/html/search/functions_2.js
+++ b/docs/html/search/functions_2.js
@@ -4,38 +4,46 @@ var searchData=
   ['c12c12_5frate_1',['c12c12_rate',['../namespacegridfire_1_1approx8.html#a70eb18e9706ac28a308dcb4fcec7421f',1,'gridfire::approx8']]],
   ['c12o16_5frate_2',['c12o16_rate',['../namespacegridfire_1_1approx8.html#a8c30b7e6099c5fc2aa94f9c68fd075dc',1,'gridfire::approx8']]],
   ['c12p_5frate_3',['c12p_rate',['../namespacegridfire_1_1approx8.html#a890ad24c2cdb15fb76a3ff8a7b8d77db',1,'gridfire::approx8']]],
-  ['calculate_5fforward_5frate_5flog_5fderivative_4',['calculate_forward_rate_log_derivative',['../classgridfire_1_1reaction_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061',1,'gridfire::reaction::Reaction::calculate_forward_rate_log_derivative()'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#aa4b8d0d30459f360ff6e29d848e943d5',1,'gridfire::reaction::LogicalReaction::calculate_forward_rate_log_derivative()'],['../classgridfire_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061',1,'gridfire::Reaction::calculate_forward_rate_log_derivative()']]],
-  ['calculate_5frate_5',['calculate_rate',['../classgridfire_1_1reaction_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec',1,'gridfire::reaction::Reaction::calculate_rate(const double T9) const'],['../classgridfire_1_1reaction_1_1_reaction.html#a735192a42f72cd68f289493753e1a616',1,'gridfire::reaction::Reaction::calculate_rate(const CppAD::AD&lt; double &gt; T9) const'],['../classgridfire_1_1reaction_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af',1,'gridfire::reaction::Reaction::calculate_rate(const T T9) const'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a1d2fb3b6a6a1860ace98b32447d1dd1b',1,'gridfire::reaction::LogicalReaction::calculate_rate(const double T9) const override'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#adad6f4297c1d8ce487eab092b73cdd32',1,'gridfire::reaction::LogicalReaction::calculate_rate(const CppAD::AD&lt; double &gt; T9) const override'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a019b721d83741acdb16036f00739f87c',1,'gridfire::reaction::LogicalReaction::calculate_rate(const T T9) const'],['../classgridfire_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec',1,'gridfire::Reaction::calculate_rate(const double T9) const'],['../classgridfire_1_1_reaction.html#a735192a42f72cd68f289493753e1a616',1,'gridfire::Reaction::calculate_rate(const CppAD::AD&lt; double &gt; T9) const'],['../classgridfire_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af',1,'gridfire::Reaction::calculate_rate(const T T9) const']]],
-  ['calculateallderivatives_6',['calculateAllDerivatives',['../classgridfire_1_1_graph_engine.html#af41df9ce979b6410e12642cb093916c9',1,'gridfire::GraphEngine::calculateAllDerivatives(const std::vector&lt; T &gt; &amp;Y_in, T T9, T rho) const'],['../classgridfire_1_1_graph_engine.html#aaf4d54e4b774ab8ec8eabec006579d31',1,'gridfire::GraphEngine::calculateAllDerivatives(const std::vector&lt; double &gt; &amp;Y_in, const double T9, const double rho) const'],['../classgridfire_1_1_graph_engine.html#a71a3d1181b90c3becdc5d9a3da05b9c9',1,'gridfire::GraphEngine::calculateAllDerivatives(const std::vector&lt; ADDouble &gt; &amp;Y_in, const ADDouble &amp;T9, const ADDouble &amp;rho) const']]],
-  ['calculateallderivativesusingprecomputation_7',['calculateAllDerivativesUsingPrecomputation',['../classgridfire_1_1_graph_engine.html#a97f98706b51fbe0d167ed81ffe58c438',1,'gridfire::GraphEngine']]],
-  ['calculateallreactionflows_8',['calculateAllReactionFlows',['../classgridfire_1_1_adaptive_engine_view.html#abdbaf4b87629efe43ac1255dad424c0c',1,'gridfire::AdaptiveEngineView']]],
-  ['calculatecreationrate_9',['calculateCreationRate',['../namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d',1,'gridfire']]],
-  ['calculatedestructionrateconstant_10',['calculateDestructionRateConstant',['../namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2',1,'gridfire']]],
-  ['calculatefactors_5fimpl_11',['calculateFactors_impl',['../classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a',1,'gridfire::screening::BareScreeningModel::calculateFactors_impl()'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#a2695206d46b9d2c2503f8e58c44df88f',1,'gridfire::screening::WeakScreeningModel::calculateFactors_impl()']]],
-  ['calculatemolarreactionflow_12',['calculateMolarReactionFlow',['../classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785',1,'gridfire::DynamicEngine::calculateMolarReactionFlow()'],['../classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f',1,'gridfire::GraphEngine::calculateMolarReactionFlow(const reaction::Reaction &amp;reaction, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override'],['../classgridfire_1_1_graph_engine.html#a5e96b5a0b34c8932f0e14eabda57f1a4',1,'gridfire::GraphEngine::calculateMolarReactionFlow(const reaction::Reaction &amp;reaction, const std::vector&lt; T &gt; &amp;Y, const T T9, const T rho) const'],['../classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31',1,'gridfire::AdaptiveEngineView::calculateMolarReactionFlow()'],['../classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032',1,'gridfire::DefinedEngineView::calculateMolarReactionFlow()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044',1,'gridfire::MultiscalePartitioningEngineView::calculateMolarReactionFlow()'],['../class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a',1,'PyDynamicEngine::calculateMolarReactionFlow()']]],
-  ['calculatereversemolarreactionflow_13',['calculateReverseMolarReactionFlow',['../classgridfire_1_1_graph_engine.html#a17774cd9ffcf1ba94019df766a0984a0',1,'gridfire::GraphEngine']]],
-  ['calculatereverserate_14',['calculateReverseRate',['../classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28',1,'gridfire::GraphEngine']]],
-  ['calculatereverseratetwobody_15',['calculateReverseRateTwoBody',['../classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755',1,'gridfire::GraphEngine']]],
-  ['calculatereverseratetwobodyderivative_16',['calculateReverseRateTwoBodyDerivative',['../classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7',1,'gridfire::GraphEngine']]],
-  ['calculaterhsandenergy_17',['calculateRHSAndEnergy',['../classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb',1,'gridfire::Engine::calculateRHSAndEnergy()'],['../classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081',1,'gridfire::GraphEngine::calculateRHSAndEnergy()'],['../classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5',1,'gridfire::AdaptiveEngineView::calculateRHSAndEnergy()'],['../classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d',1,'gridfire::DefinedEngineView::calculateRHSAndEnergy()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb',1,'gridfire::MultiscalePartitioningEngineView::calculateRHSAndEnergy()'],['../class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d',1,'PyEngine::calculateRHSAndEnergy()'],['../class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a',1,'PyDynamicEngine::calculateRHSAndEnergy()']]],
-  ['calculatescreeningfactors_18',['calculateScreeningFactors',['../classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde',1,'gridfire::screening::ScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const =0'],['../classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22',1,'gridfire::screening::ScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; ADDouble &gt; &amp;Y, const ADDouble T9, const ADDouble rho) const =0'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60',1,'gridfire::screening::BareScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99',1,'gridfire::screening::BareScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; ADDouble &gt; &amp;Y, const ADDouble T9, const ADDouble rho) const override'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c',1,'gridfire::screening::WeakScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#ac6bc78769670a460af1ff88284cb8ad4',1,'gridfire::screening::WeakScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const CppAD::AD&lt; double &gt; T9, const CppAD::AD&lt; double &gt; rho) const override'],['../class_py_screening.html#a2b8756c197eb89e77cb6dd231c979315',1,'PyScreening::calculateScreeningFactors(const gridfire::reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, const double T9, const double rho) const override'],['../class_py_screening.html#a5539d59311c778cf7f0006acc8f84ade',1,'PyScreening::calculateScreeningFactors(const gridfire::reaction::LogicalReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; ADDouble &gt; &amp;Y, const ADDouble T9, const ADDouble rho) const override']]],
-  ['chapter_19',['chapter',['../classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629',1,'gridfire::reaction::Reaction::chapter()'],['../classgridfire_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629',1,'gridfire::Reaction::chapter()']]],
-  ['clear_20',['clear',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a05f71d318564d880079fd6c96d59ae21',1,'gridfire::reaction::TemplatedReactionSet']]],
-  ['clone_21',['clone',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a',1,'gridfire::partition::CompositePartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d',1,'gridfire::partition::PartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4',1,'gridfire::partition::GroundStatePartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6',1,'gridfire::partition::RauscherThielemannPartitionFunction::clone()'],['../class_py_partition_function.html#af918b357e38fb82499ad53584557c43d',1,'PyPartitionFunction::clone()']]],
-  ['collect_22',['collect',['../classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e',1,'gridfire::DefinedEngineView']]],
-  ['collectatomicreverserateatomicbases_23',['collectAtomicReverseRateAtomicBases',['../classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746',1,'gridfire::GraphEngine']]],
-  ['collectnetworkspecies_24',['collectNetworkSpecies',['../classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa',1,'gridfire::GraphEngine']]],
-  ['compositepartitionfunction_25',['CompositePartitionFunction',['../classgridfire_1_1partition_1_1_composite_partition_function.html#ad80743933712de627c6a69d06d42ceb5',1,'gridfire::partition::CompositePartitionFunction::CompositePartitionFunction(const std::vector&lt; BasePartitionType &gt; &amp;partitionFunctions)'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#ac1bc5bedabef400fab6aceb477dbc6b9',1,'gridfire::partition::CompositePartitionFunction::CompositePartitionFunction(const CompositePartitionFunction &amp;other)']]],
-  ['compute_5fand_5fcache_26',['compute_and_cache',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
-  ['con_5fstype_5fregister_5fgraph_5fengine_5fbindings_27',['con_stype_register_graph_engine_bindings',['../engine_2bindings_8cpp.html#a61b016667b7477d898be2a2a5bc7cab8',1,'con_stype_register_graph_engine_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a61b016667b7477d898be2a2a5bc7cab8',1,'con_stype_register_graph_engine_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
-  ['constructcandidategroups_28',['constructCandidateGroups',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ac206840057bac65b7f7738e6dfd1047a',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['constructprimingreactionset_29',['constructPrimingReactionSet',['../classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f',1,'gridfire::NetworkPrimingEngineView']]],
-  ['constructreactionindexmap_30',['constructReactionIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c',1,'gridfire::AdaptiveEngineView::constructReactionIndexMap()'],['../classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68',1,'gridfire::DefinedEngineView::constructReactionIndexMap()']]],
-  ['constructspeciesindexmap_31',['constructSpeciesIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d',1,'gridfire::AdaptiveEngineView::constructSpeciesIndexMap()'],['../classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985',1,'gridfire::DefinedEngineView::constructSpeciesIndexMap()']]],
-  ['contains_32',['contains',['../classgridfire_1_1reaction_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b',1,'gridfire::reaction::Reaction::contains()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a7777ecd0f594fdf66ce57d22610fad3c',1,'gridfire::reaction::TemplatedReactionSet::contains(const std::string_view &amp;id) const'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ab8cb5fbce6b819b9e4e44b0c2db54c6f',1,'gridfire::reaction::TemplatedReactionSet::contains(const Reaction &amp;reaction) const'],['../classgridfire_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b',1,'gridfire::Reaction::contains()']]],
-  ['contains_5fproduct_33',['contains_product',['../classgridfire_1_1reaction_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2',1,'gridfire::reaction::Reaction::contains_product()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a443ec5d7138764b32975232e13071ccf',1,'gridfire::reaction::TemplatedReactionSet::contains_product()'],['../classgridfire_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2',1,'gridfire::Reaction::contains_product()']]],
-  ['contains_5freactant_34',['contains_reactant',['../classgridfire_1_1reaction_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45',1,'gridfire::reaction::Reaction::contains_reactant()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac42606350d7557106f7954b1f114c128',1,'gridfire::reaction::TemplatedReactionSet::contains_reactant()'],['../classgridfire_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45',1,'gridfire::Reaction::contains_reactant()']]],
-  ['contains_5fspecies_35',['contains_species',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad870856d206d93f27125c88d44ff9e34',1,'gridfire::reaction::TemplatedReactionSet']]],
-  ['convert_5fnetin_36',['convert_netIn',['../classgridfire_1_1approx8_1_1_approx8_network.html#a56426da6f1af7eb8a6d1cc70bc8e742a',1,'gridfire::approx8::Approx8Network']]],
-  ['cullreactionsbyflow_37',['cullReactionsByFlow',['../classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08',1,'gridfire::AdaptiveEngineView']]]
+  ['calculate_5fenergy_5fgeneration_5frate_4',['calculate_energy_generation_rate',['../classgridfire_1_1reaction_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd',1,'gridfire::reaction::Reaction::calculate_energy_generation_rate(const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const'],['../classgridfire_1_1reaction_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80',1,'gridfire::reaction::Reaction::calculate_energy_generation_rate(const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a091d6d4aa59f788c97f9b5481f46f1b5',1,'gridfire::rates::weak::WeakReaction::calculate_energy_generation_rate(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#af515e3587a1050c4bc59657696be5f9b',1,'gridfire::rates::weak::WeakReaction::calculate_energy_generation_rate(const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override'],['../classgridfire_1_1_reaction.html#ae66b446c98add7e00a1d960f4e7c60dd',1,'gridfire::Reaction::calculate_energy_generation_rate(const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const'],['../classgridfire_1_1_reaction.html#a4282f85c34d6db1994c07e7a40f66d80',1,'gridfire::Reaction::calculate_energy_generation_rate(const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const']]],
+  ['calculate_5flog_5frate_5fpartial_5fderiv_5fwrt_5ft9_5',['calculate_log_rate_partial_deriv_wrt_T9',['../classgridfire_1_1reaction_1_1_reaction.html#aa2b615e764bb005e526ca9327319c735',1,'gridfire::reaction::Reaction::calculate_log_rate_partial_deriv_wrt_T9()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656',1,'gridfire::reaction::ReaclibReaction::calculate_log_rate_partial_deriv_wrt_T9()'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a9b1363314159eaf9c56aaa233f5eebd6',1,'gridfire::reaction::LogicalReaclibReaction::calculate_log_rate_partial_deriv_wrt_T9()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac2d5366d4b5766413db34558dbce3cb3',1,'gridfire::rates::weak::WeakReaction::calculate_log_rate_partial_deriv_wrt_T9()'],['../classgridfire_1_1_reaction.html#aec9859c030364e1d4a740197514731db',1,'gridfire::Reaction::calculate_log_rate_partial_deriv_wrt_T9()']]],
+  ['calculate_5frate_6',['calculate_rate',['../classgridfire_1_1reaction_1_1_reaction.html#a83c121480533593adfd68c4a67a649f1',1,'gridfire::reaction::Reaction::calculate_rate(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const =0'],['../classgridfire_1_1reaction_1_1_reaction.html#af8303d67df61fc9e31ce054f0e8a3e14',1,'gridfire::reaction::Reaction::calculate_rate(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const =0'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#acd16b1daf13456b3523362a37b1bf9b0',1,'gridfire::reaction::ReaclibReaction::calculate_rate(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#afec5ccf7a8fb1ba56c8cc852ce858c5e',1,'gridfire::reaction::ReaclibReaction::calculate_rate(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#aeb177f9cf69e4f97c4518a27e6480523',1,'gridfire::reaction::ReaclibReaction::calculate_rate(const T T9) const'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ac21a726884930e6a00792e7c3eb43f42',1,'gridfire::reaction::LogicalReaclibReaction::calculate_rate(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ab5bdbe13239f1180f32fb0a14a60d0a9',1,'gridfire::reaction::LogicalReaclibReaction::calculate_rate(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a19462806927500f72b7d3f578b3040de',1,'gridfire::reaction::LogicalReaclibReaction::calculate_rate(const T T9) const'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a05df0657efed55eb4262c7834d81400a',1,'gridfire::rates::weak::WeakReaction::calculate_rate(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90ca346e2321516656b83d863416671e',1,'gridfire::rates::weak::WeakReaction::calculate_rate(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aa28f151d4ce14e0d6fcbecb07d03cd28',1,'gridfire::rates::weak::WeakReaction::calculate_rate(T T9, T rho, T Ye, T mue, const std::vector&lt; T &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const'],['../classgridfire_1_1_reaction.html#abb3e2b9c5404f45fc5656eeac1d06a6c',1,'gridfire::Reaction::calculate_rate(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const=0'],['../classgridfire_1_1_reaction.html#a8cbc768819bea8497a7b9fa644b8fd65',1,'gridfire::Reaction::calculate_rate(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const=0']]],
+  ['calculate_5frhs_7',['calculate_rhs',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a38e0f02ba54e217e9638260d9651b1c3',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['calculateallderivatives_8',['calculateAllDerivatives',['../classgridfire_1_1_graph_engine.html#a8873331f5ae40a3f640dedbbed685ed9',1,'gridfire::GraphEngine']]],
+  ['calculateallderivativesusingprecomputation_9',['calculateAllDerivativesUsingPrecomputation',['../classgridfire_1_1_graph_engine.html#aef12443d7980301d8bb89f4ba4890450',1,'gridfire::GraphEngine']]],
+  ['calculateallreactionflows_10',['calculateAllReactionFlows',['../classgridfire_1_1_adaptive_engine_view.html#ab5397d217039f096acededd4d2779780',1,'gridfire::AdaptiveEngineView']]],
+  ['calculatecreationrate_11',['calculateCreationRate',['../namespacegridfire.html#a8995b949592d59850e45a3fd27306369',1,'gridfire::calculateCreationRate(const DynamicEngine &amp;engine, const fourdst::atomic::Species &amp;species, const fourdst::composition::Composition &amp;composition, double T9, double rho)'],['../namespacegridfire.html#a553717597efebcea94232a4a1d80e31d',1,'gridfire::calculateCreationRate(const DynamicEngine &amp;engine, const Species &amp;species, const Composition &amp;comp, const double T9, const double rho)']]],
+  ['calculatedestructionrateconstant_12',['calculateDestructionRateConstant',['../namespacegridfire.html#ab6e14208fad69f4031411a9346c12397',1,'gridfire::calculateDestructionRateConstant(const DynamicEngine &amp;engine, const fourdst::atomic::Species &amp;species, const fourdst::composition::Composition &amp;composition, double T9, double rho)'],['../namespacegridfire.html#a023dc09e48b62e3f93f9a8b70cb2c63f',1,'gridfire::calculateDestructionRateConstant(const DynamicEngine &amp;engine, const Species &amp;species, const Composition &amp;comp, const double T9, const double rho)']]],
+  ['calculateepsderivatives_13',['calculateEpsDerivatives',['../classgridfire_1_1_dynamic_engine.html#a264bd5a8891c8c5f0dff32867effe547',1,'gridfire::DynamicEngine::calculateEpsDerivatives()'],['../classgridfire_1_1_graph_engine.html#ae0c9159cc3467fd85d1a5895f1786c47',1,'gridfire::GraphEngine::calculateEpsDerivatives()'],['../classgridfire_1_1_adaptive_engine_view.html#a5d1b50afd2fba6af75e976a4f9c9dcbc',1,'gridfire::AdaptiveEngineView::calculateEpsDerivatives()'],['../classgridfire_1_1_defined_engine_view.html#a06aca977aafb4784fd167acb8c02dda2',1,'gridfire::DefinedEngineView::calculateEpsDerivatives()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a99f9116d5a18afcbf0e808ef111d1be8',1,'gridfire::MultiscalePartitioningEngineView::calculateEpsDerivatives()']]],
+  ['calculatefactors_5fimpl_14',['calculateFactors_impl',['../classgridfire_1_1screening_1_1_bare_screening_model.html#a48a3392d735c61b15b4855c823acfada',1,'gridfire::screening::BareScreeningModel::calculateFactors_impl()'],['../classgridfire_1_1screening_1_1_intermediate_screening_model.html#a794b7781f07343383da3894208cfbfa9',1,'gridfire::screening::IntermediateScreeningModel::calculateFactors_impl()'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#aa9f95ba8c052dacb72295775516b7e5f',1,'gridfire::screening::WeakScreeningModel::calculateFactors_impl()']]],
+  ['calculatemolarreactionflow_15',['calculateMolarReactionFlow',['../classgridfire_1_1_dynamic_engine.html#a39cf5b738eea0a275bf8c0eb5789fab3',1,'gridfire::DynamicEngine::calculateMolarReactionFlow()'],['../classgridfire_1_1_graph_engine.html#a1675859971f0bd2db0650f8da54ed7eb',1,'gridfire::GraphEngine::calculateMolarReactionFlow(const reaction::Reaction &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const override'],['../classgridfire_1_1_graph_engine.html#a2bea809d2efb3a5e7cc065ec80baebce',1,'gridfire::GraphEngine::calculateMolarReactionFlow(const reaction::Reaction &amp;reaction, const std::vector&lt; T &gt; &amp;Y, const T T9, const T rho, T Ye, T mue) const'],['../classgridfire_1_1_adaptive_engine_view.html#a3c1e27b45051c4ba481a2b87513982ed',1,'gridfire::AdaptiveEngineView::calculateMolarReactionFlow()'],['../classgridfire_1_1_defined_engine_view.html#a74298377d0432ae3d577be0e9e6052b3',1,'gridfire::DefinedEngineView::calculateMolarReactionFlow()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a87687a960f263a4e1bc035e4d0a345db',1,'gridfire::MultiscalePartitioningEngineView::calculateMolarReactionFlow()'],['../class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a',1,'PyDynamicEngine::calculateMolarReactionFlow()']]],
+  ['calculatereversemolarreactionflow_16',['calculateReverseMolarReactionFlow',['../classgridfire_1_1_graph_engine.html#a972d0705351167dc889a2f6c442e7a93',1,'gridfire::GraphEngine']]],
+  ['calculatereverserate_17',['calculateReverseRate',['../classgridfire_1_1_graph_engine.html#accf01734524a706ad03c9b9898af54b3',1,'gridfire::GraphEngine']]],
+  ['calculatereverseratetwobody_18',['calculateReverseRateTwoBody',['../classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755',1,'gridfire::GraphEngine']]],
+  ['calculatereverseratetwobodyderivative_19',['calculateReverseRateTwoBodyDerivative',['../classgridfire_1_1_graph_engine.html#a9340db538a507b96e186b60ba0450205',1,'gridfire::GraphEngine']]],
+  ['calculaterhsandenergy_20',['calculateRHSAndEnergy',['../classgridfire_1_1_engine.html#add48d3af9ebde17717e42e220e349740',1,'gridfire::Engine::calculateRHSAndEnergy()'],['../classgridfire_1_1_graph_engine.html#a7acc98647427981a9602d251c9288012',1,'gridfire::GraphEngine::calculateRHSAndEnergy()'],['../classgridfire_1_1_adaptive_engine_view.html#ac5545d546166de94514871d7ad7b8669',1,'gridfire::AdaptiveEngineView::calculateRHSAndEnergy()'],['../classgridfire_1_1_defined_engine_view.html#af273b29d7700cdc34da6e2712fffc5c2',1,'gridfire::DefinedEngineView::calculateRHSAndEnergy()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a5c1ab19bc3394a5d29241ef02073c4cb',1,'gridfire::MultiscalePartitioningEngineView::calculateRHSAndEnergy()'],['../class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d',1,'PyEngine::calculateRHSAndEnergy()'],['../class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a',1,'PyDynamicEngine::calculateRHSAndEnergy()']]],
+  ['calculatescreeningfactors_21',['calculateScreeningFactors',['../classgridfire_1_1screening_1_1_screening_model.html#ab08c4490f9da18254a7c6f29be1f62ce',1,'gridfire::screening::ScreeningModel::calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const =0'],['../classgridfire_1_1screening_1_1_screening_model.html#a1da8242c7591ab32453d1e0109999d6c',1,'gridfire::screening::ScreeningModel::calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, ADDouble T9, ADDouble rho) const =0'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#ad252ce1de82401bab24747aabf0c8a3a',1,'gridfire::screening::BareScreeningModel::calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#a0ac3685a90c1e65a84e03cfb2fed29e5',1,'gridfire::screening::BareScreeningModel::calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, ADDouble T9, ADDouble rho) const override'],['../classgridfire_1_1screening_1_1_intermediate_screening_model.html#a86a218ce82306ed582296cbeb3de0250',1,'gridfire::screening::IntermediateScreeningModel::calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override'],['../classgridfire_1_1screening_1_1_intermediate_screening_model.html#a765e369256282f0f25e66e13c33dcbd9',1,'gridfire::screening::IntermediateScreeningModel::calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; ADDouble &gt; &amp;Y, ADDouble T9, ADDouble rho) const override'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#a6a215d082b0d05126fb2b19fd1983446',1,'gridfire::screening::WeakScreeningModel::calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#a8b0590814e7058b4ff3f0cd6f4124773',1,'gridfire::screening::WeakScreeningModel::calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho) const override'],['../class_py_screening.html#aa67b5f0528006d9c742033b8c5ab3a05',1,'PyScreening::calculateScreeningFactors(const gridfire::reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override'],['../class_py_screening.html#a68a126de903e1a87a1d7d1cfec8add0f',1,'PyScreening::calculateScreeningFactors(const gridfire::reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; ADDouble &gt; &amp;Y, ADDouble T9, ADDouble rho) const override']]],
+  ['chapter_22',['chapter',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#abe189c43e4d509d9d05dd205861ceddc',1,'gridfire::reaction::ReaclibReaction']]],
+  ['check_23',['check',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a50df7fefee167390522aa258fa6ee960',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::check()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3855b15459217383647ecdf12bc35775',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::check()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a04598611b0807cad395bdd2fbc41a6c2',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::check()'],['../classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88',1,'gridfire::trigger::Trigger::check()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#aaefdfa86856f9f7839b6a7fdffa4a579',1,'gridfire::trigger::AndTrigger::check()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#ac8be54d91e77ed16ae3cca2417d82e0a',1,'gridfire::trigger::OrTrigger::check()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#ae453a72df20fdd416443ef7867f86b92',1,'gridfire::trigger::NotTrigger::check()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69fbb099f8d13d39602f58fa8aa8e7f2',1,'gridfire::trigger::EveryNthTrigger::check()']]],
+  ['cleanup_5fcvode_5fresources_24',['cleanup_cvode_resources',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a7f6786780137de1a136e081c537a9667',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['clear_25',['clear',['../classgridfire_1_1reaction_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300',1,'gridfire::reaction::ReactionSet::clear()'],['../classgridfire_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300',1,'gridfire::ReactionSet::clear()']]],
+  ['clone_26',['clone',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a',1,'gridfire::partition::CompositePartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d',1,'gridfire::partition::PartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4',1,'gridfire::partition::GroundStatePartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6',1,'gridfire::partition::RauscherThielemannPartitionFunction::clone()'],['../classgridfire_1_1reaction_1_1_reaction.html#ab95ce7fb022a9432bdc77f14679221ee',1,'gridfire::reaction::Reaction::clone()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a54fde02e7010e806136f976ab64b1740',1,'gridfire::reaction::ReaclibReaction::clone()'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad113b9cb64c449f9449c4cce4fa64076',1,'gridfire::reaction::LogicalReaclibReaction::clone()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac10e1451d20876f6eab199e127f213c7',1,'gridfire::rates::weak::WeakReaction::clone()'],['../class_py_partition_function.html#af918b357e38fb82499ad53584557c43d',1,'PyPartitionFunction::clone()'],['../classgridfire_1_1_reaction.html#a588a8c19970463d97f5aa333fcd312dc',1,'gridfire::Reaction::clone()']]],
+  ['collect_27',['collect',['../classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e',1,'gridfire::DefinedEngineView']]],
+  ['collectatomicreverserateatomicbases_28',['collectAtomicReverseRateAtomicBases',['../classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746',1,'gridfire::GraphEngine']]],
+  ['collectnetworkspecies_29',['collectNetworkSpecies',['../classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa',1,'gridfire::GraphEngine']]],
+  ['column_30',['Column',['../classgridfire_1_1utils_1_1_column.html#a7d7e4f4cf6f8e03725afeb9f664321b8',1,'gridfire::utils::Column']]],
+  ['compositepartitionfunction_31',['CompositePartitionFunction',['../classgridfire_1_1partition_1_1_composite_partition_function.html#ad80743933712de627c6a69d06d42ceb5',1,'gridfire::partition::CompositePartitionFunction::CompositePartitionFunction(const std::vector&lt; BasePartitionType &gt; &amp;partitionFunctions)'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#ac1bc5bedabef400fab6aceb477dbc6b9',1,'gridfire::partition::CompositePartitionFunction::CompositePartitionFunction(const CompositePartitionFunction &amp;other)']]],
+  ['con_5fstype_5fregister_5fgraph_5fengine_5fbindings_32',['con_stype_register_graph_engine_bindings',['../engine_2bindings_8cpp.html#a73d427751e6a64952d52e7c2cc84d065',1,'con_stype_register_graph_engine_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a73d427751e6a64952d52e7c2cc84d065',1,'con_stype_register_graph_engine_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['constructcandidategroups_33',['constructCandidateGroups',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aaabaae8e33ca8a05a2aa1f374e792795',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['constructprimingreactionset_34',['constructPrimingReactionSet',['../classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f',1,'gridfire::NetworkPrimingEngineView']]],
+  ['constructreactionindexmap_35',['constructReactionIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c',1,'gridfire::AdaptiveEngineView::constructReactionIndexMap()'],['../classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68',1,'gridfire::DefinedEngineView::constructReactionIndexMap()']]],
+  ['constructspeciesindexmap_36',['constructSpeciesIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d',1,'gridfire::AdaptiveEngineView::constructSpeciesIndexMap()'],['../classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985',1,'gridfire::DefinedEngineView::constructSpeciesIndexMap()']]],
+  ['contains_37',['contains',['../classgridfire_1_1reaction_1_1_reaction.html#a768db057d358240d4825c21869af0792',1,'gridfire::reaction::Reaction::contains()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a171b690e1abaf23f11a94c39e9f8c944',1,'gridfire::reaction::ReaclibReaction::contains()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387',1,'gridfire::reaction::ReactionSet::contains(const std::string_view &amp;id) const'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a2f6b165c86634a68f35032c2267255f8',1,'gridfire::reaction::ReactionSet::contains(const Reaction &amp;reaction) const'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a745b161968f37873b5d40fe6bf9d2118',1,'gridfire::rates::weak::WeakReaction::contains()'],['../classgridfire_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387',1,'gridfire::ReactionSet::contains(const std::string_view &amp;id) const'],['../classgridfire_1_1_reaction_set.html#a2f6b165c86634a68f35032c2267255f8',1,'gridfire::ReactionSet::contains(const Reaction &amp;reaction) const'],['../classgridfire_1_1_reaction.html#adaeb5d72faf7d55d4e26f6e1fcba21c1',1,'gridfire::Reaction::contains()']]],
+  ['contains_5fproduct_38',['contains_product',['../classgridfire_1_1reaction_1_1_reaction.html#a2708d2e8f42159df6605a5948b13c4c5',1,'gridfire::reaction::Reaction::contains_product()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a4e4811436d09afaa4a14c51d9af71f88',1,'gridfire::reaction::ReaclibReaction::contains_product()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e',1,'gridfire::reaction::ReactionSet::contains_product()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a957b5bfe70e536290ef677a7c5b6643f',1,'gridfire::rates::weak::WeakReaction::contains_product()'],['../classgridfire_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e',1,'gridfire::ReactionSet::contains_product()'],['../classgridfire_1_1_reaction.html#a5a17ca61d069749960e5a83e58c0b8a1',1,'gridfire::Reaction::contains_product()']]],
+  ['contains_5freactant_39',['contains_reactant',['../classgridfire_1_1reaction_1_1_reaction.html#ab28bf4f9417ecabcc8350bae449fedd5',1,'gridfire::reaction::Reaction::contains_reactant()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a65a12e5f6180873866cfaaf130fd1156',1,'gridfire::reaction::ReaclibReaction::contains_reactant()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2',1,'gridfire::reaction::ReactionSet::contains_reactant()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a98095e6536d9a6434c5955f4c169d505',1,'gridfire::rates::weak::WeakReaction::contains_reactant()'],['../classgridfire_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2',1,'gridfire::ReactionSet::contains_reactant()'],['../classgridfire_1_1_reaction.html#afca3afba45a3db79980c8fe18c87c750',1,'gridfire::Reaction::contains_reactant()']]],
+  ['contains_5fspecies_40',['contains_species',['../classgridfire_1_1reaction_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a',1,'gridfire::reaction::ReactionSet::contains_species()'],['../classgridfire_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a',1,'gridfire::ReactionSet::contains_species()']]],
+  ['convert_5fnetin_41',['convert_netIn',['../classgridfire_1_1approx8_1_1_approx8_network.html#a56426da6f1af7eb8a6d1cc70bc8e742a',1,'gridfire::approx8::Approx8Network']]],
+  ['cullreactionsbyflow_42',['cullReactionsByFlow',['../classgridfire_1_1_adaptive_engine_view.html#a95fbfb7f2bdbf80195f1ea0aff8d62fb',1,'gridfire::AdaptiveEngineView']]],
+  ['cvode_5fjac_5fwrapper_43',['cvode_jac_wrapper',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ae13fc9c21f595edbee1c9b7debaa61b3',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['cvode_5frhs_5fwrapper_44',['cvode_rhs_wrapper',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a14c620ef75749c8ef3dfdb84132e5620',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['cvodesolverstrategy_45',['CVODESolverStrategy',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a924a541da3b205818f90b50d675631c0',1,'gridfire::solver::CVODESolverStrategy::CVODESolverStrategy(DynamicEngine &amp;engine)'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a2fa56a2e7a63d31d2afa895a5e4fe827',1,'gridfire::solver::CVODESolverStrategy::CVODESolverStrategy(const CVODESolverStrategy &amp;)=delete'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a1f007d68e808ba61f8425d0487432c0d',1,'gridfire::solver::CVODESolverStrategy::CVODESolverStrategy(CVODESolverStrategy &amp;&amp;)=delete']]]
 ];
diff --git a/docs/html/search/functions_3.js b/docs/html/search/functions_3.js
index 85d00325..b5c7a292 100644
--- a/docs/html/search/functions_3.js
+++ b/docs/html/search/functions_3.js
@@ -2,8 +2,8 @@ var searchData=
 [
   ['definedengineview_0',['DefinedEngineView',['../classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92',1,'gridfire::DefinedEngineView']]],
   ['density_1',['density',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc',1,'gridfire::exceptions::StaleEngineTrigger']]],
-  ['describe_2',['describe',['../structgridfire_1_1solver_1_1_solver_context_base.html#a9cbef3cabc8524e542613ee50d8860c6',1,'gridfire::solver::SolverContextBase::describe()'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ab032139a719e551f888ae012ef8018ee',1,'gridfire::solver::DirectNetworkSolver::TimestepContext::describe()']]],
-  ['describe_5fcallback_5fcontext_3',['describe_callback_context',['../classgridfire_1_1solver_1_1_network_solver_strategy.html#ae09169769774f17df8701c42a64ed656',1,'gridfire::solver::NetworkSolverStrategy::describe_callback_context()'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a053c9c1343af8f30ced69707e1d899e3',1,'gridfire::solver::DirectNetworkSolver::describe_callback_context()'],['../class_py_dynamic_network_solver_strategy.html#a147a0a543268427a5930143902217ac3',1,'PyDynamicNetworkSolverStrategy::describe_callback_context()']]],
+  ['describe_2',['describe',['../structgridfire_1_1solver_1_1_solver_context_base.html#a9cbef3cabc8524e542613ee50d8860c6',1,'gridfire::solver::SolverContextBase::describe()'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#ae3c6320ce7a8f41c9ae36c42d62b4204',1,'gridfire::solver::CVODESolverStrategy::TimestepContext::describe()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a0f412b8f788ab7990e353d62ab7d9a16',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::describe()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#ad0dd92f9da6c291c3bd57c0983940035',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::describe()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a8ba5a942bb61347851030d1eb6bbaa74',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::describe()'],['../classgridfire_1_1trigger_1_1_trigger.html#a402cdd062e9479abbcca02e3d94e528f',1,'gridfire::trigger::Trigger::describe()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#a2dcd635c6bdbcfe517adca6e2bd5c408',1,'gridfire::trigger::AndTrigger::describe()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#accb56630df2f57400467d315c61dede6',1,'gridfire::trigger::OrTrigger::describe()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#ad8166350329db3e1f50954afbb311a35',1,'gridfire::trigger::NotTrigger::describe()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#aab88715f3c94437ca7f3fcb1698c69de',1,'gridfire::trigger::EveryNthTrigger::describe()']]],
+  ['describe_5fcallback_5fcontext_3',['describe_callback_context',['../classgridfire_1_1solver_1_1_network_solver_strategy.html#ae09169769774f17df8701c42a64ed656',1,'gridfire::solver::NetworkSolverStrategy::describe_callback_context()'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5dfb7a2ce0008d41dee4aa596a4e1ce4',1,'gridfire::solver::CVODESolverStrategy::describe_callback_context()'],['../class_py_dynamic_network_solver_strategy.html#a147a0a543268427a5930143902217ac3',1,'PyDynamicNetworkSolverStrategy::describe_callback_context()']]],
   ['df_4',['df',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
   ['dp_5frate_5',['dp_rate',['../namespacegridfire_1_1approx8.html#a51d139de74680c8437d20a3fa622200c',1,'gridfire::approx8']]]
 ];
diff --git a/docs/html/search/functions_4.js b/docs/html/search/functions_4.js
index c990bd30..47322a14 100644
--- a/docs/html/search/functions_4.js
+++ b/docs/html/search/functions_4.js
@@ -1,14 +1,15 @@
 var searchData=
 [
-  ['eigenfunctor_0',['EigenFunctor',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a1aa29df77925443796e1e59c1b7b7a60',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
-  ['end_1',['end',['../classgridfire_1_1reaction_1_1_logical_reaction.html#af8d23557326e6c8499fa4919ac0bd972',1,'gridfire::reaction::LogicalReaction::end()'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a054994f733b44293b4d79f3a9b207560',1,'gridfire::reaction::LogicalReaction::end() const'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad19adbee44a71559a53785e3b1fc7e92',1,'gridfire::reaction::TemplatedReactionSet::end()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac128da7417955ef8c5cb2bde5a1293c9',1,'gridfire::reaction::TemplatedReactionSet::end() const']]],
+  ['eigenfunctor_0',['EigenFunctor',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a24463a5e83e096ef368878ad29fdafb6',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['end_1',['end',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#aefaf6c4c32ae54a2882da0e031632a74',1,'gridfire::reaction::LogicalReaclibReaction::end()'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ae0b38d499bf0c9ca58461ea2862a7d5a',1,'gridfire::reaction::LogicalReaclibReaction::end() const'],['../classgridfire_1_1reaction_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987',1,'gridfire::reaction::ReactionSet::end()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a436f9c4b8f8a4e115b19728d57d8e105',1,'gridfire::reaction::ReactionSet::end() const'],['../classgridfire_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987',1,'gridfire::ReactionSet::end()'],['../classgridfire_1_1_reaction_set.html#a436f9c4b8f8a4e115b19728d57d8e105',1,'gridfire::ReactionSet::end() const']]],
   ['energy_2',['energy',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf',1,'gridfire::exceptions::StaleEngineTrigger']]],
-  ['engineerror_3',['EngineError',['../structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa',1,'gridfire::expectations::EngineError']]],
+  ['engineerror_3',['EngineError',['../structgridfire_1_1expectations_1_1_engine_error.html#a574a18b105ee285f516db535e1e3bdfd',1,'gridfire::expectations::EngineError']]],
   ['engineindexerror_4',['EngineIndexError',['../structgridfire_1_1expectations_1_1_engine_index_error.html#ab44bba2a197d43319e65cd200cd347b0',1,'gridfire::expectations::EngineIndexError']]],
-  ['equilibratenetwork_5',['equilibrateNetwork',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d',1,'gridfire::MultiscalePartitioningEngineView::equilibrateNetwork(const std::vector&lt; double &gt; &amp;Y, double T9, double rho)'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc',1,'gridfire::MultiscalePartitioningEngineView::equilibrateNetwork(const NetIn &amp;netIn)']]],
-  ['evaluate_6',['evaluate',['../classgridfire_1_1approx8_1_1_approx8_network.html#a888734a3cdde4259e921e2efece411ee',1,'gridfire::approx8::Approx8Network::evaluate()'],['../classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c',1,'gridfire::Network::evaluate()'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b',1,'gridfire::partition::CompositePartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817',1,'gridfire::partition::PartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5',1,'gridfire::partition::GroundStatePartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681',1,'gridfire::partition::RauscherThielemannPartitionFunction::evaluate()'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f',1,'gridfire::solver::NetworkSolverStrategy::evaluate()'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a',1,'gridfire::solver::DirectNetworkSolver::evaluate()'],['../class_py_partition_function.html#a83aca0bc261734b7d3df8269f730c69b',1,'PyPartitionFunction::evaluate()'],['../class_py_dynamic_network_solver_strategy.html#a2095abb83ed6229ebb27b4883cec51c4',1,'PyDynamicNetworkSolverStrategy::evaluate()']]],
+  ['equilibratenetwork_5',['equilibrateNetwork',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a2f0c45d4e2b2f9de5d961088f3ab0a9a',1,'gridfire::MultiscalePartitioningEngineView::equilibrateNetwork(const fourdst::composition::Composition &amp;comp, double T9, double rho)'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc',1,'gridfire::MultiscalePartitioningEngineView::equilibrateNetwork(const NetIn &amp;netIn)']]],
+  ['evaluate_6',['evaluate',['../classgridfire_1_1approx8_1_1_approx8_network.html#a888734a3cdde4259e921e2efece411ee',1,'gridfire::approx8::Approx8Network::evaluate()'],['../classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c',1,'gridfire::Network::evaluate()'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b',1,'gridfire::partition::CompositePartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817',1,'gridfire::partition::PartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5',1,'gridfire::partition::GroundStatePartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681',1,'gridfire::partition::RauscherThielemannPartitionFunction::evaluate()'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f',1,'gridfire::solver::NetworkSolverStrategy::evaluate()'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab8224d205ea3a28d9c723631c2f00b53',1,'gridfire::solver::CVODESolverStrategy::evaluate()'],['../class_py_partition_function.html#a83aca0bc261734b7d3df8269f730c69b',1,'PyPartitionFunction::evaluate()'],['../class_py_dynamic_network_solver_strategy.html#a2095abb83ed6229ebb27b4883cec51c4',1,'PyDynamicNetworkSolverStrategy::evaluate()']]],
   ['evaluatederivative_7',['evaluateDerivative',['../classgridfire_1_1partition_1_1_composite_partition_function.html#ac8900afaa5edd24fcb8eaf19e7379183',1,'gridfire::partition::CompositePartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_partition_function.html#a14009bdaca47f3eddf2c6c023845db5a',1,'gridfire::partition::PartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0eff10c7b134d9d4081ad72bbc785c5b',1,'gridfire::partition::GroundStatePartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aaa1e11579b44a88c5f18943cc303c4b4',1,'gridfire::partition::RauscherThielemannPartitionFunction::evaluateDerivative()'],['../class_py_partition_function.html#a260df9689bf698970ebf5104977a3dcf',1,'PyPartitionFunction::evaluateDerivative()']]],
-  ['excess_5fenergy_8',['excess_energy',['../classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5',1,'gridfire::reaction::Reaction::excess_energy()'],['../classgridfire_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5',1,'gridfire::Reaction::excess_energy()']]],
-  ['exporttocsv_9',['exportToCSV',['../classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95',1,'gridfire::GraphEngine']]],
-  ['exporttodot_10',['exportToDot',['../classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929',1,'gridfire::GraphEngine::exportToDot()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18',1,'gridfire::MultiscalePartitioningEngineView::exportToDot()']]]
+  ['everynthtrigger_8',['EveryNthTrigger',['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69e5a3061926e1cd36fbd0a5285fa0a7',1,'gridfire::trigger::EveryNthTrigger']]],
+  ['excess_5fenergy_9',['excess_energy',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0b30c49925823c87980b4fca17c8282e',1,'gridfire::reaction::ReaclibReaction']]],
+  ['exporttocsv_10',['exportToCSV',['../classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95',1,'gridfire::GraphEngine']]],
+  ['exporttodot_11',['exportToDot',['../classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929',1,'gridfire::GraphEngine::exportToDot()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#adfa1e133c49c0ef78b374d37e90a3372',1,'gridfire::MultiscalePartitioningEngineView::exportToDot()']]]
 ];
diff --git a/docs/html/search/functions_5.js b/docs/html/search/functions_5.js
index 17be6e5a..77e1d78d 100644
--- a/docs/html/search/functions_5.js
+++ b/docs/html/search/functions_5.js
@@ -2,11 +2,12 @@ var searchData=
 [
   ['failedtopartitionengineerror_0',['FailedToPartitionEngineError',['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a9b9e8752798876d34a444f61fc2f509a',1,'gridfire::exceptions::FailedToPartitionEngineError']]],
   ['filedefinedengineview_1',['FileDefinedEngineView',['../classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd',1,'gridfire::FileDefinedEngineView']]],
-  ['finalizeactiveset_2',['finalizeActiveSet',['../classgridfire_1_1_adaptive_engine_view.html#aa79fb382c98461b02a2c30668491e6c5',1,'gridfire::AdaptiveEngineView']]],
+  ['finalizeactiveset_2',['finalizeActiveSet',['../classgridfire_1_1_adaptive_engine_view.html#a7b8b3a786b973e4383e721358e61b7ed',1,'gridfire::AdaptiveEngineView']]],
   ['find_3',['find',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a12058e121981294f447e69a467fd84cd',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
-  ['finddominantcreationchannel_4',['findDominantCreationChannel',['../namespacegridfire.html#aefc63ddbfe97dcb4178c94dfd1c4b256',1,'gridfire']]],
+  ['finddominantcreationchannel_4',['findDominantCreationChannel',['../namespacegridfire.html#a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f',1,'gridfire']]],
   ['findreachablespecies_5',['findReachableSpecies',['../classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b',1,'gridfire::AdaptiveEngineView']]],
-  ['for_5fsparse_5fjac_6',['for_sparse_jac',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4',1,'gridfire::GraphEngine::AtomicReverseRate']]],
-  ['formatnucleartimescalelogstring_7',['formatNuclearTimescaleLogString',['../namespacegridfire_1_1utils.html#af56693a70d9e2b40c8ae2c3bcd4b26c8',1,'gridfire::utils']]],
-  ['forward_8',['forward',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0',1,'gridfire::GraphEngine::AtomicReverseRate']]]
+  ['for_5fsparse_5fjac_6',['for_sparse_jac',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4',1,'gridfire::GraphEngine::AtomicReverseRate::for_sparse_jac()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a976a2ef2e58439429c1a6e94c27f4662',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::for_sparse_jac()']]],
+  ['format_5ftable_7',['format_table',['../namespacegridfire_1_1utils.html#a6451ba6762273b91a8281043cfaa5d2a',1,'gridfire::utils']]],
+  ['formatnucleartimescalelogstring_8',['formatNuclearTimescaleLogString',['../namespacegridfire_1_1utils.html#a05fda32d3fc4ab10060b8c4c251c2f3d',1,'gridfire::utils']]],
+  ['forward_9',['forward',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0',1,'gridfire::GraphEngine::AtomicReverseRate::forward()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ab4f12e8da29d4d158fb0adf2db31b4bb',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::forward()']]]
 ];
diff --git a/docs/html/search/functions_6.js b/docs/html/search/functions_6.js
index b5db5d46..f75061b8 100644
--- a/docs/html/search/functions_6.js
+++ b/docs/html/search/functions_6.js
@@ -1,30 +1,41 @@
 var searchData=
 [
-  ['generatejacobianmatrix_0',['generateJacobianMatrix',['../classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d',1,'gridfire::DynamicEngine::generateJacobianMatrix(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho) const =0'],['../classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7',1,'gridfire::DynamicEngine::generateJacobianMatrix(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const'],['../classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119',1,'gridfire::GraphEngine::generateJacobianMatrix(const std::vector&lt; double &gt; &amp;Y_dynamic, const double T9, const double rho) const override'],['../classgridfire_1_1_graph_engine.html#a9687eef88c97eeb7f8680acb230f8ac1',1,'gridfire::GraphEngine::generateJacobianMatrix(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const override'],['../classgridfire_1_1_adaptive_engine_view.html#a03fc187d3d306b9058103b9522cbbaeb',1,'gridfire::AdaptiveEngineView::generateJacobianMatrix()'],['../classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae',1,'gridfire::DefinedEngineView::generateJacobianMatrix()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#acdf5ad8765290ea2b78170235aea391d',1,'gridfire::MultiscalePartitioningEngineView::generateJacobianMatrix()'],['../class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d',1,'PyDynamicEngine::generateJacobianMatrix(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho) const override'],['../class_py_dynamic_engine.html#aa0f1fd3f0c0185395193d1b6897d64c5',1,'PyDynamicEngine::generateJacobianMatrix(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const gridfire::SparsityPattern &amp;sparsityPattern) const override']]],
+  ['generatejacobianmatrix_0',['generateJacobianMatrix',['../classgridfire_1_1_dynamic_engine.html#a21d15531309456ee83f7675251e7a1bf',1,'gridfire::DynamicEngine::generateJacobianMatrix(const fourdst::composition::Composition &amp;comp, double T9, double rho) const =0'],['../classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd',1,'gridfire::DynamicEngine::generateJacobianMatrix(const fourdst::composition::Composition &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const'],['../classgridfire_1_1_graph_engine.html#ae11f6267077025ca342e2e263ad87e5e',1,'gridfire::GraphEngine::generateJacobianMatrix(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override'],['../classgridfire_1_1_graph_engine.html#a4e0bbc6448999e2ef06879270b7d3dec',1,'gridfire::GraphEngine::generateJacobianMatrix(const fourdst::composition::Composition &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const override'],['../classgridfire_1_1_adaptive_engine_view.html#a8da7664cf483cba7f979f855a74c3559',1,'gridfire::AdaptiveEngineView::generateJacobianMatrix()'],['../classgridfire_1_1_defined_engine_view.html#ab80eadd713a40e9263e5231737e956d0',1,'gridfire::DefinedEngineView::generateJacobianMatrix()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ab9f71bc9a1c0f98ec9cc1c7da00fd975',1,'gridfire::MultiscalePartitioningEngineView::generateJacobianMatrix()'],['../class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d',1,'PyDynamicEngine::generateJacobianMatrix(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho) const override'],['../class_py_dynamic_engine.html#aa0f1fd3f0c0185395193d1b6897d64c5',1,'PyDynamicEngine::generateJacobianMatrix(const std::vector&lt; double &gt; &amp;Y_dynamic, double T9, double rho, const gridfire::SparsityPattern &amp;sparsityPattern) const override']]],
   ['generatestoichiometrymatrix_1',['generateStoichiometryMatrix',['../classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f',1,'gridfire::DynamicEngine::generateStoichiometryMatrix()'],['../classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38',1,'gridfire::GraphEngine::generateStoichiometryMatrix()'],['../classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111',1,'gridfire::AdaptiveEngineView::generateStoichiometryMatrix()'],['../classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6',1,'gridfire::DefinedEngineView::generateStoichiometryMatrix()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a',1,'gridfire::MultiscalePartitioningEngineView::generateStoichiometryMatrix()'],['../class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9',1,'PyDynamicEngine::generateStoichiometryMatrix()']]],
-  ['get_5fall_5freactions_2',['get_all_reactions',['../namespacegridfire_1_1reaclib.html#a91c7971c9d0a2971b9a6fa4d841c761d',1,'gridfire::reaclib']]],
-  ['get_5finterpolation_5fpoints_3',['get_interpolation_points',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3baed110ab1b12e22071dc2d92c55db9',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
-  ['get_5ft9_5farray_4',['get_T9_array',['../namespacegridfire_1_1approx8.html#a20f9c48e60a5abf0b6868d1d05080222',1,'gridfire::approx8']]],
-  ['getbaseengine_5',['getBaseEngine',['../classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c',1,'gridfire::AdaptiveEngineView::getBaseEngine()'],['../classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484',1,'gridfire::DefinedEngineView::getBaseEngine()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1',1,'gridfire::MultiscalePartitioningEngineView::getBaseEngine()'],['../classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6',1,'gridfire::EngineView::getBaseEngine()'],['../class_py_engine_view.html#a3cd83dc57b521c65a14edf70357a8845',1,'PyEngineView::getBaseEngine()'],['../class_py_dynamic_engine_view.html#a51680b135cfc3eea40daf9ef5aa903e0',1,'PyDynamicEngineView::getBaseEngine()']]],
-  ['getdepth_6',['getDepth',['../classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9',1,'gridfire::DynamicEngine::getDepth()'],['../classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4',1,'gridfire::GraphEngine::getDepth()'],['../class_py_dynamic_engine.html#adba68716d832b6100e08d32fbc36f13c',1,'PyDynamicEngine::getDepth()']]],
-  ['getdynamicspecies_7',['getDynamicSpecies',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['getfastspecies_8',['getFastSpecies',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['getformat_9',['getFormat',['../classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118',1,'gridfire::Network']]],
-  ['getjacobianmatrixentry_10',['getJacobianMatrixEntry',['../classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07',1,'gridfire::DynamicEngine::getJacobianMatrixEntry()'],['../classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c',1,'gridfire::GraphEngine::getJacobianMatrixEntry()'],['../classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58',1,'gridfire::AdaptiveEngineView::getJacobianMatrixEntry()'],['../classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b',1,'gridfire::DefinedEngineView::getJacobianMatrixEntry()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ac961484383e86d9712a424728e068633',1,'gridfire::MultiscalePartitioningEngineView::getJacobianMatrixEntry()'],['../class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159',1,'PyDynamicEngine::getJacobianMatrixEntry()']]],
-  ['getmolarabundance_11',['getMolarAbundance',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea',1,'gridfire::exceptions::StaleEngineTrigger']]],
-  ['getnetreactionstoichiometry_12',['getNetReactionStoichiometry',['../classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9',1,'gridfire::GraphEngine']]],
-  ['getnetworkfile_13',['getNetworkFile',['../classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718',1,'gridfire::FileDefinedEngineView']]],
-  ['getnetworkreactions_14',['getNetworkReactions',['../classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037',1,'gridfire::DynamicEngine::getNetworkReactions()'],['../classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da',1,'gridfire::GraphEngine::getNetworkReactions()'],['../classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c',1,'gridfire::AdaptiveEngineView::getNetworkReactions()'],['../classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d',1,'gridfire::DefinedEngineView::getNetworkReactions()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ad751f2c1306895ee74a61f2071ca96eb',1,'gridfire::MultiscalePartitioningEngineView::getNetworkReactions()'],['../class_py_dynamic_engine.html#a5988cfba247631ba6c00795cafda9a38',1,'PyDynamicEngine::getNetworkReactions()']]],
-  ['getnetworkspecies_15',['getNetworkSpecies',['../classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3',1,'gridfire::Engine::getNetworkSpecies()'],['../classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767',1,'gridfire::GraphEngine::getNetworkSpecies()'],['../classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1',1,'gridfire::AdaptiveEngineView::getNetworkSpecies()'],['../classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211',1,'gridfire::DefinedEngineView::getNetworkSpecies()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80',1,'gridfire::MultiscalePartitioningEngineView::getNetworkSpecies()'],['../class_py_engine.html#a2d240423899e039c2ca688e96f8af1f2',1,'PyEngine::getNetworkSpecies()'],['../class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d',1,'PyDynamicEngine::getNetworkSpecies()']]],
-  ['getparser_16',['getParser',['../classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f',1,'gridfire::FileDefinedEngineView']]],
-  ['getpartitionfunction_17',['getPartitionFunction',['../classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44',1,'gridfire::GraphEngine']]],
-  ['getreactionsetspecies_18',['getReactionSetSpecies',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a1596de3439735a45ac344fa85ace6c82',1,'gridfire::reaction::TemplatedReactionSet']]],
-  ['getscreeningmodel_19',['getScreeningModel',['../classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0',1,'gridfire::DynamicEngine::getScreeningModel()'],['../classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a',1,'gridfire::GraphEngine::getScreeningModel()'],['../classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f',1,'gridfire::AdaptiveEngineView::getScreeningModel()'],['../classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c',1,'gridfire::DefinedEngineView::getScreeningModel()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82',1,'gridfire::MultiscalePartitioningEngineView::getScreeningModel()'],['../class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5',1,'PyDynamicEngine::getScreeningModel()']]],
-  ['getspeciesdestructiontimescales_20',['getSpeciesDestructionTimescales',['../classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6',1,'gridfire::DynamicEngine::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_graph_engine.html#aef8f6bde24d27345067b71084330c7da',1,'gridfire::GraphEngine::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_adaptive_engine_view.html#a522e78bce9ff062939572248d57f8cea',1,'gridfire::AdaptiveEngineView::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491',1,'gridfire::DefinedEngineView::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aa38c367ef3c74d012ccd10521cd5a727',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesDestructionTimescales()'],['../class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3',1,'PyDynamicEngine::getSpeciesDestructionTimescales()']]],
-  ['getspeciesindex_21',['getSpeciesIndex',['../classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9',1,'gridfire::DynamicEngine::getSpeciesIndex()'],['../classgridfire_1_1_graph_engine.html#a914f6abc61805cddaebcb8f3cf470dda',1,'gridfire::GraphEngine::getSpeciesIndex()'],['../classgridfire_1_1_adaptive_engine_view.html#a9055feb245524a5a9549ace935f059ff',1,'gridfire::AdaptiveEngineView::getSpeciesIndex()'],['../classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3',1,'gridfire::DefinedEngineView::getSpeciesIndex()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a91d32b7197fcb27ee697d5bfde960f3f',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesIndex()'],['../class_py_dynamic_engine.html#a2ee1d745c1c21b9fcb652c96c42f1091',1,'PyDynamicEngine::getSpeciesIndex()']]],
-  ['getspeciestimescales_22',['getSpeciesTimescales',['../classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813',1,'gridfire::DynamicEngine::getSpeciesTimescales()'],['../classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581',1,'gridfire::GraphEngine::getSpeciesTimescales()'],['../classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9',1,'gridfire::AdaptiveEngineView::getSpeciesTimescales()'],['../classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72',1,'gridfire::DefinedEngineView::getSpeciesTimescales()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a560612347bbd5b7b380e990624d01105',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesTimescales()'],['../class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22',1,'PyDynamicEngine::getSpeciesTimescales()']]],
-  ['getstate_23',['getState',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5',1,'gridfire::exceptions::StaleEngineTrigger']]],
-  ['getstoichiometrymatrixentry_24',['getStoichiometryMatrixEntry',['../classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f',1,'gridfire::DynamicEngine::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152',1,'gridfire::GraphEngine::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9',1,'gridfire::AdaptiveEngineView::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2',1,'gridfire::DefinedEngineView::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a510b920dea726aef859ac1f6d051807e',1,'gridfire::MultiscalePartitioningEngineView::getStoichiometryMatrixEntry()'],['../class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83',1,'PyDynamicEngine::getStoichiometryMatrixEntry()']]],
-  ['graphengine_25',['GraphEngine',['../classgridfire_1_1_graph_engine.html#afad967546b611d9c005268760feb75d5',1,'gridfire::GraphEngine::GraphEngine(const fourdst::composition::Composition &amp;composition, const BuildDepthType=NetworkBuildDepth::Full)'],['../classgridfire_1_1_graph_engine.html#a39d9838ed40bea71ee6c552bb5969026',1,'gridfire::GraphEngine::GraphEngine(const fourdst::composition::Composition &amp;composition, const partition::PartitionFunction &amp;partitionFunction, const BuildDepthType buildDepth=NetworkBuildDepth::Full)'],['../classgridfire_1_1_graph_engine.html#a1e7e851dfa21d41c2dc533ba56fc4c7b',1,'gridfire::GraphEngine::GraphEngine(const reaction::LogicalReactionSet &amp;reactions)']]],
-  ['groundstatepartitionfunction_26',['GroundStatePartitionFunction',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a8afa2aee993eb3ed8d01c887d39b57eb',1,'gridfire::partition::GroundStatePartitionFunction']]]
+  ['get_5fall_5freaclib_5freactions_2',['get_all_reaclib_reactions',['../namespacegridfire_1_1reaclib.html#a5f2326f2f76cb1895d6cf5daed9b030b',1,'gridfire::reaclib']]],
+  ['get_5fall_5freactions_3',['get_all_reactions',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a9ab9f6f64455eb46172ebda5e8cc3ec5',1,'gridfire::rates::weak::WeakReactionMap']]],
+  ['get_5finterpolation_5fpoints_4',['get_interpolation_points',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3baed110ab1b12e22071dc2d92c55db9',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+  ['get_5flog_5fneutrino_5floss_5ffrom_5fpayload_5',['get_log_neutrino_loss_from_payload',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a7f0d21c80fbbf94ead613e678d44b835',1,'gridfire::rates::weak::WeakReaction']]],
+  ['get_5flog_5frate_5ffrom_5fpayload_6',['get_log_rate_from_payload',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a14555633289fc3822e927afca7401e49',1,'gridfire::rates::weak::WeakReaction']]],
+  ['get_5frate_5fderivatives_7',['get_rate_derivatives',['../classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a48cec4c8f1e117f73d7e88c3597b4d16',1,'gridfire::rates::weak::WeakRateInterpolator']]],
+  ['get_5frates_8',['get_rates',['../classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ae36a65c29c34b004111d266dc668107b',1,'gridfire::rates::weak::WeakRateInterpolator']]],
+  ['get_5fspecies_5freactions_9',['get_species_reactions',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a290da6766a6d3094a5aae8b7cbcd0d70',1,'gridfire::rates::weak::WeakReactionMap::get_species_reactions(const fourdst::atomic::Species &amp;species) const'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#ad7345da84824495fb21c969c1a9c80f5',1,'gridfire::rates::weak::WeakReactionMap::get_species_reactions(const std::string &amp;species_name) const']]],
+  ['get_5fstdout_5flogging_5fenabled_10',['get_stdout_logging_enabled',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a87b7b39e2a15cc30b118c8e6fda9a1a6',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['get_5ft9_5farray_11',['get_T9_array',['../namespacegridfire_1_1approx8.html#a20f9c48e60a5abf0b6868d1d05080222',1,'gridfire::approx8']]],
+  ['getbaseengine_12',['getBaseEngine',['../classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c',1,'gridfire::AdaptiveEngineView::getBaseEngine()'],['../classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484',1,'gridfire::DefinedEngineView::getBaseEngine()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1',1,'gridfire::MultiscalePartitioningEngineView::getBaseEngine()'],['../classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6',1,'gridfire::EngineView::getBaseEngine()'],['../class_py_engine_view.html#a3cd83dc57b521c65a14edf70357a8845',1,'PyEngineView::getBaseEngine()'],['../class_py_dynamic_engine_view.html#a51680b135cfc3eea40daf9ef5aa903e0',1,'PyDynamicEngineView::getBaseEngine()']]],
+  ['getcelldata_13',['getCellData',['../classgridfire_1_1utils_1_1_column_base.html#a5e07c8e33c96ee8095ebefbf9b75cb36',1,'gridfire::utils::ColumnBase::getCellData()'],['../classgridfire_1_1utils_1_1_column.html#a5bd0ad730a684e1a8b583c5c27cca6e8',1,'gridfire::utils::Column::getCellData()']]],
+  ['getdepth_14',['getDepth',['../classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9',1,'gridfire::DynamicEngine::getDepth()'],['../classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4',1,'gridfire::GraphEngine::getDepth()'],['../class_py_dynamic_engine.html#adba68716d832b6100e08d32fbc36f13c',1,'PyDynamicEngine::getDepth()']]],
+  ['getdynamicspecies_15',['getDynamicSpecies',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['getfastspecies_16',['getFastSpecies',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['getformat_17',['getFormat',['../classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118',1,'gridfire::Network']]],
+  ['getheader_18',['getHeader',['../classgridfire_1_1utils_1_1_column_base.html#a4dd5f1409d3190eab9ba07eb6e611248',1,'gridfire::utils::ColumnBase::getHeader()'],['../classgridfire_1_1utils_1_1_column.html#ad6a4f9aee1321e90896e5f4583d7311f',1,'gridfire::utils::Column::getHeader()']]],
+  ['getjacobianmatrixentry_19',['getJacobianMatrixEntry',['../classgridfire_1_1_dynamic_engine.html#a88dbf350dc0ea3e2b64d825f489e0d60',1,'gridfire::DynamicEngine::getJacobianMatrixEntry()'],['../classgridfire_1_1_graph_engine.html#a8ab5308629b8707922e5954776254aa6',1,'gridfire::GraphEngine::getJacobianMatrixEntry()'],['../classgridfire_1_1_adaptive_engine_view.html#adf3b8a5734983509ca02b7a1a480119f',1,'gridfire::AdaptiveEngineView::getJacobianMatrixEntry()'],['../classgridfire_1_1_defined_engine_view.html#aa49532266ff959ac66f501336f102ce8',1,'gridfire::DefinedEngineView::getJacobianMatrixEntry()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a586da5402750151fee5db2666785b6e4',1,'gridfire::MultiscalePartitioningEngineView::getJacobianMatrixEntry()'],['../class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159',1,'PyDynamicEngine::getJacobianMatrixEntry()']]],
+  ['getmolarabundance_20',['getMolarAbundance',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea',1,'gridfire::exceptions::StaleEngineTrigger']]],
+  ['getnetreactionstoichiometry_21',['getNetReactionStoichiometry',['../classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9',1,'gridfire::GraphEngine']]],
+  ['getnetworkfile_22',['getNetworkFile',['../classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718',1,'gridfire::FileDefinedEngineView']]],
+  ['getnetworkreactions_23',['getNetworkReactions',['../classgridfire_1_1_dynamic_engine.html#af496e04f7be9a0a51ac65dc95f901ffe',1,'gridfire::DynamicEngine::getNetworkReactions()'],['../classgridfire_1_1_graph_engine.html#a3b7f3ba85821165f58f168bc68f86b2d',1,'gridfire::GraphEngine::getNetworkReactions()'],['../classgridfire_1_1_adaptive_engine_view.html#a3247c1e6a76de5622223ee7b5ca3452a',1,'gridfire::AdaptiveEngineView::getNetworkReactions()'],['../classgridfire_1_1_defined_engine_view.html#a5f9db5a9287aa03b2fa4d516e9a576b6',1,'gridfire::DefinedEngineView::getNetworkReactions()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a253e51d6dc7226a863a123683049af61',1,'gridfire::MultiscalePartitioningEngineView::getNetworkReactions()'],['../class_py_dynamic_engine.html#a1d5143640666631501cf229bc491516e',1,'PyDynamicEngine::getNetworkReactions()']]],
+  ['getnetworkspecies_24',['getNetworkSpecies',['../classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3',1,'gridfire::Engine::getNetworkSpecies()'],['../classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767',1,'gridfire::GraphEngine::getNetworkSpecies()'],['../classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1',1,'gridfire::AdaptiveEngineView::getNetworkSpecies()'],['../classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211',1,'gridfire::DefinedEngineView::getNetworkSpecies()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80',1,'gridfire::MultiscalePartitioningEngineView::getNetworkSpecies()'],['../class_py_engine.html#a2d240423899e039c2ca688e96f8af1f2',1,'PyEngine::getNetworkSpecies()'],['../class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d',1,'PyDynamicEngine::getNetworkSpecies()']]],
+  ['getparser_25',['getParser',['../classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f',1,'gridfire::FileDefinedEngineView']]],
+  ['getpartitionfunction_26',['getPartitionFunction',['../classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44',1,'gridfire::GraphEngine']]],
+  ['getreactionsetspecies_27',['getReactionSetSpecies',['../classgridfire_1_1reaction_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b',1,'gridfire::reaction::ReactionSet::getReactionSetSpecies()'],['../classgridfire_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b',1,'gridfire::ReactionSet::getReactionSetSpecies()']]],
+  ['getrowcount_28',['getRowCount',['../classgridfire_1_1utils_1_1_column_base.html#ab6e4cb14c8a0ad7b6b9ad0fbde766cba',1,'gridfire::utils::ColumnBase::getRowCount()'],['../classgridfire_1_1utils_1_1_column.html#a7ff9084a0486fb8b08edfe866480568b',1,'gridfire::utils::Column::getRowCount()']]],
+  ['getscreeningmodel_29',['getScreeningModel',['../classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0',1,'gridfire::DynamicEngine::getScreeningModel()'],['../classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a',1,'gridfire::GraphEngine::getScreeningModel()'],['../classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f',1,'gridfire::AdaptiveEngineView::getScreeningModel()'],['../classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c',1,'gridfire::DefinedEngineView::getScreeningModel()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82',1,'gridfire::MultiscalePartitioningEngineView::getScreeningModel()'],['../class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5',1,'PyDynamicEngine::getScreeningModel()']]],
+  ['getspeciesdestructiontimescales_30',['getSpeciesDestructionTimescales',['../classgridfire_1_1_dynamic_engine.html#a25c040d3078f6ff2ef38f733eb68f1fa',1,'gridfire::DynamicEngine::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_graph_engine.html#a47df5a9c448dd1ce8654df819a6cc8ff',1,'gridfire::GraphEngine::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_adaptive_engine_view.html#aa861db5f6fc4e85fb51f524e4e1367c6',1,'gridfire::AdaptiveEngineView::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_defined_engine_view.html#a7bcf169ba1e12e3356d4bcc27c3fc554',1,'gridfire::DefinedEngineView::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a14b0c7ec882b2ad2370f7aa729b9f9',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesDestructionTimescales()'],['../class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3',1,'PyDynamicEngine::getSpeciesDestructionTimescales()']]],
+  ['getspeciesindex_31',['getSpeciesIndex',['../classgridfire_1_1_dynamic_engine.html#a8f66fb76c9f983ee93bf8b95cdc85596',1,'gridfire::DynamicEngine::getSpeciesIndex()'],['../classgridfire_1_1_graph_engine.html#a9e426e6c178dd80bd58090489d3b2be9',1,'gridfire::GraphEngine::getSpeciesIndex()'],['../classgridfire_1_1_adaptive_engine_view.html#abb811382522c31f6456787edd4f59ace',1,'gridfire::AdaptiveEngineView::getSpeciesIndex()'],['../classgridfire_1_1_defined_engine_view.html#af3b355ffcda6a8f2841184cc56e3761a',1,'gridfire::DefinedEngineView::getSpeciesIndex()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a8db21995e6878f4043f3a5a45bf36d5e',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesIndex()'],['../class_py_dynamic_engine.html#a95d10a7b240d543a1bc6c67ddf2dc8e0',1,'PyDynamicEngine::getSpeciesIndex()']]],
+  ['getspeciestimescales_32',['getSpeciesTimescales',['../classgridfire_1_1_dynamic_engine.html#ae7114f5ebc6667b5e5971c0450ed03d9',1,'gridfire::DynamicEngine::getSpeciesTimescales()'],['../classgridfire_1_1_graph_engine.html#a7dde968244f3c4934c7738445c709232',1,'gridfire::GraphEngine::getSpeciesTimescales()'],['../classgridfire_1_1_adaptive_engine_view.html#a57a218c5a145f589531777c8615b7408',1,'gridfire::AdaptiveEngineView::getSpeciesTimescales()'],['../classgridfire_1_1_defined_engine_view.html#a18f46d92ea7e04068ad9e7af4ed605a8',1,'gridfire::DefinedEngineView::getSpeciesTimescales()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aea2c3d2ae6ddf77bd4a9b07b86f3306b',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesTimescales()'],['../class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22',1,'PyDynamicEngine::getSpeciesTimescales()']]],
+  ['getstate_33',['getState',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5',1,'gridfire::exceptions::StaleEngineTrigger']]],
+  ['getstoichiometrymatrixentry_34',['getStoichiometryMatrixEntry',['../classgridfire_1_1_dynamic_engine.html#ad19c8451b6f624e2938f771cc067d5c1',1,'gridfire::DynamicEngine::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_graph_engine.html#ad90a2d770ebf098f0d6d5f5339961e95',1,'gridfire::GraphEngine::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_adaptive_engine_view.html#abe2ca6426e10cc6a10090eecf7098dbe',1,'gridfire::AdaptiveEngineView::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_defined_engine_view.html#af1843cfd2a95bfa46ab40d4c4de11ef9',1,'gridfire::DefinedEngineView::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7140384baaaa0bd05ca448a0d8fec471',1,'gridfire::MultiscalePartitioningEngineView::getStoichiometryMatrixEntry()'],['../class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83',1,'PyDynamicEngine::getStoichiometryMatrixEntry()']]],
+  ['getweakrateinterpolator_35',['getWeakRateInterpolator',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aefc75b3149bee2da878177279ad375da',1,'gridfire::rates::weak::WeakReaction']]],
+  ['graphengine_36',['GraphEngine',['../classgridfire_1_1_graph_engine.html#a38aaafb1d9a6548bc8e8cb672417bbbe',1,'gridfire::GraphEngine::GraphEngine(const fourdst::composition::Composition &amp;composition, BuildDepthType=NetworkBuildDepth::Full)'],['../classgridfire_1_1_graph_engine.html#a3a03fbd767f495ca667f23789b07c293',1,'gridfire::GraphEngine::GraphEngine(const fourdst::composition::Composition &amp;composition, const partition::PartitionFunction &amp;partitionFunction, BuildDepthType buildDepth=NetworkBuildDepth::Full)'],['../classgridfire_1_1_graph_engine.html#a514cc6b5482d6a27902975da17b5e39e',1,'gridfire::GraphEngine::GraphEngine(const reaction::ReactionSet &amp;reactions)']]],
+  ['groundstatepartitionfunction_37',['GroundStatePartitionFunction',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a8afa2aee993eb3ed8d01c887d39b57eb',1,'gridfire::partition::GroundStatePartitionFunction']]]
 ];
diff --git a/docs/html/search/functions_7.js b/docs/html/search/functions_7.js
index 4be9b445..95f8fbbc 100644
--- a/docs/html/search/functions_7.js
+++ b/docs/html/search/functions_7.js
@@ -1,6 +1,6 @@
 var searchData=
 [
-  ['hash_0',['hash',['../structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d',1,'gridfire::QSECacheKey::hash()'],['../classgridfire_1_1reaction_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5',1,'gridfire::reaction::Reaction::hash()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a272800016c83f259f5c6a92dc797353c',1,'gridfire::reaction::TemplatedReactionSet::hash()'],['../classgridfire_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5',1,'gridfire::Reaction::hash()']]],
+  ['hash_0',['hash',['../structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d',1,'gridfire::QSECacheKey::hash()'],['../classgridfire_1_1reaction_1_1_reaction.html#a7ba8c18cd5445aa3499a6fd351183f7a',1,'gridfire::reaction::Reaction::hash()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a661dd461e51c37133f7f9931389fd3cc',1,'gridfire::reaction::ReaclibReaction::hash()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99',1,'gridfire::reaction::ReactionSet::hash()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad2ba6b584cb2df7c15633fca81ce6af1',1,'gridfire::rates::weak::WeakReaction::hash()'],['../classgridfire_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99',1,'gridfire::ReactionSet::hash()'],['../classgridfire_1_1_reaction.html#a41b1c16f499c9255251ed43725cf698c',1,'gridfire::Reaction::hash()']]],
   ['he3he3_5frate_1',['he3he3_rate',['../namespacegridfire_1_1approx8.html#a12cb71ba6ed03750af9e7659464197ea',1,'gridfire::approx8']]],
   ['he3he4_5frate_2',['he3he4_rate',['../namespacegridfire_1_1approx8.html#a593cd66c1eadae4da233ae73b4aad4a3',1,'gridfire::approx8']]],
   ['hit_3',['hit',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5eb642e161ffb5500ccc1e412849ee5e',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
diff --git a/docs/html/search/functions_8.js b/docs/html/search/functions_8.js
index c0bc1eab..7e969616 100644
--- a/docs/html/search/functions_8.js
+++ b/docs/html/search/functions_8.js
@@ -1,13 +1,16 @@
 var searchData=
 [
-  ['id_0',['id',['../classgridfire_1_1reaction_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905',1,'gridfire::reaction::Reaction::id()'],['../classgridfire_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905',1,'gridfire::Reaction::id()']]],
-  ['identifymeanslowestpool_1',['identifyMeanSlowestPool',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a54ca8004fbd8d6d3ea6f67efeb5dbc8d',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['initializeallreaclibreactions_2',['initializeAllReaclibReactions',['../namespacegridfire_1_1reaclib.html#a02ff11b88be94392151873e06a30b276',1,'gridfire::reaclib']]],
-  ['inputs_3',['inputs',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a0adf1074b5e6ba448cedff7563c450d0',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
-  ['involvesspecies_4',['involvesSpecies',['../classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b',1,'gridfire::GraphEngine']]],
-  ['is_5freverse_5',['is_reverse',['../classgridfire_1_1reaction_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba',1,'gridfire::reaction::Reaction::is_reverse()'],['../classgridfire_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba',1,'gridfire::Reaction::is_reverse()']]],
-  ['isprecomputationenabled_6',['isPrecomputationEnabled',['../classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f',1,'gridfire::GraphEngine']]],
-  ['isstale_7',['isStale',['../classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398',1,'gridfire::DynamicEngine::isStale()'],['../classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5',1,'gridfire::GraphEngine::isStale()'],['../classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88',1,'gridfire::AdaptiveEngineView::isStale()'],['../classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87',1,'gridfire::DefinedEngineView::isStale()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46',1,'gridfire::MultiscalePartitioningEngineView::isStale()'],['../class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14',1,'PyDynamicEngine::isStale()']]],
-  ['isstiff_8',['isStiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#a5b17b2831389829533385900ce19a37a',1,'gridfire::approx8::Approx8Network::isStiff()'],['../classgridfire_1_1_network.html#ae93ad65deba79def4b77d420e7affa0b',1,'gridfire::Network::isStiff()']]],
-  ['isusingreversereactions_9',['isUsingReverseReactions',['../classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0',1,'gridfire::GraphEngine']]]
+  ['id_0',['id',['../classgridfire_1_1reaction_1_1_reaction.html#a94b92308b9619ec20c690e55157786ba',1,'gridfire::reaction::Reaction::id()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a06312f834439ccf93012dea53cab47ce',1,'gridfire::reaction::ReaclibReaction::id()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ad01a15d95878c9edbf57cd9045c4413b',1,'gridfire::rates::weak::WeakReaction::id()'],['../classgridfire_1_1_reaction.html#a768329002a4f0b8604b1aa51d56b5d1b',1,'gridfire::Reaction::id()']]],
+  ['identifymeanslowestpool_1',['identifyMeanSlowestPool',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a70f4a0c4123b7f78305f64eb11beeeeb',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['initialize_5fcvode_5fintegration_5fresources_2',['initialize_cvode_integration_resources',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afc6c55237df4af240c4c842305085d91',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['initializeallreaclibreactions_3',['initializeAllReaclibReactions',['../namespacegridfire_1_1reaclib.html#a02ff11b88be94392151873e06a30b276',1,'gridfire::reaclib']]],
+  ['inputs_4',['inputs',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad19c39ced17e400af9f46478546a8fa1',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['inspect_5fjacobian_5fstiffness_5',['inspect_jacobian_stiffness',['../namespacegridfire_1_1diagnostics.html#a066ee899bd259062716f25abae3890b0',1,'gridfire::diagnostics']]],
+  ['inspect_5fspecies_5fbalance_6',['inspect_species_balance',['../namespacegridfire_1_1diagnostics.html#a11c0d538e7244bee168d7f9217442128',1,'gridfire::diagnostics']]],
+  ['involvesspecies_7',['involvesSpecies',['../classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b',1,'gridfire::GraphEngine']]],
+  ['is_5freverse_8',['is_reverse',['../classgridfire_1_1reaction_1_1_reaction.html#a3906a668410e02239f9031b5fc580214',1,'gridfire::reaction::Reaction::is_reverse()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a181b2c75af1f2701c43594c5bb2bac2d',1,'gridfire::reaction::ReaclibReaction::is_reverse()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a90b62d922d91832859516450cf8e3876',1,'gridfire::rates::weak::WeakReaction::is_reverse()'],['../classgridfire_1_1_reaction.html#a640b0bdbed9ed7c2a2e9880ddbcafc1d',1,'gridfire::Reaction::is_reverse()']]],
+  ['isprecomputationenabled_9',['isPrecomputationEnabled',['../classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f',1,'gridfire::GraphEngine']]],
+  ['isstale_10',['isStale',['../classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398',1,'gridfire::DynamicEngine::isStale()'],['../classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5',1,'gridfire::GraphEngine::isStale()'],['../classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88',1,'gridfire::AdaptiveEngineView::isStale()'],['../classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87',1,'gridfire::DefinedEngineView::isStale()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46',1,'gridfire::MultiscalePartitioningEngineView::isStale()'],['../class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14',1,'PyDynamicEngine::isStale()']]],
+  ['isstiff_11',['isStiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#a5b17b2831389829533385900ce19a37a',1,'gridfire::approx8::Approx8Network::isStiff()'],['../classgridfire_1_1_network.html#ae93ad65deba79def4b77d420e7affa0b',1,'gridfire::Network::isStiff()']]],
+  ['isusingreversereactions_12',['isUsingReverseReactions',['../classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0',1,'gridfire::GraphEngine']]]
 ];
diff --git a/docs/html/search/functions_9.js b/docs/html/search/functions_9.js
index 658ba163..41c2a278 100644
--- a/docs/html/search/functions_9.js
+++ b/docs/html/search/functions_9.js
@@ -1,4 +1,6 @@
 var searchData=
 [
-  ['jacobianfunctor_0',['JacobianFunctor',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor']]]
+  ['log_5fstep_5fdiagnostics_0',['log_step_diagnostics',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a53c14f504e5b7827b4bab4a0a7a13341',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['log_5ftime_1',['log_time',['../class_solver_plugin_interface.html#a493a30c0ae4b2e1a89b7d03c02c0041c',1,'SolverPluginInterface']]],
+  ['logicalreaclibreaction_2',['LogicalReaclibReaction',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a0ff112dca1f88070effb6700429b42b4',1,'gridfire::reaction::LogicalReaclibReaction']]]
 ];
diff --git a/docs/html/search/functions_a.js b/docs/html/search/functions_a.js
index 22cc88cb..287e1881 100644
--- a/docs/html/search/functions_a.js
+++ b/docs/html/search/functions_a.js
@@ -1,4 +1,19 @@
 var searchData=
 [
-  ['logicalreaction_0',['LogicalReaction',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a6965906ea33ebd0d615811219d9e9537',1,'gridfire::reaction::LogicalReaction']]]
+  ['make_5fkey_0',['make_key',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0e75ec9b97529783e07953aaf7d70f68',1,'gridfire::partition::GroundStatePartitionFunction::make_key()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec',1,'gridfire::partition::RauscherThielemannPartitionFunction::make_key()']]],
+  ['makeenginepartitioningtrigger_1',['makeEnginePartitioningTrigger',['../namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html#a26555ea09be620dabc5f9644be8f9908',1,'gridfire::trigger::solver::CVODE']]],
+  ['mapculledtofull_2',['mapCulledToFull',['../classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1',1,'gridfire::AdaptiveEngineView']]],
+  ['mapculledtofullreactionindex_3',['mapCulledToFullReactionIndex',['../classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101',1,'gridfire::AdaptiveEngineView']]],
+  ['mapculledtofullspeciesindex_4',['mapCulledToFullSpeciesIndex',['../classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8',1,'gridfire::AdaptiveEngineView']]],
+  ['mapfulltoculled_5',['mapFullToCulled',['../classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44',1,'gridfire::AdaptiveEngineView']]],
+  ['mapfulltoview_6',['mapFullToView',['../classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873',1,'gridfire::DefinedEngineView']]],
+  ['mapnetintomolarabundancevector_7',['mapNetInToMolarAbundanceVector',['../classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a',1,'gridfire::DynamicEngine::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f',1,'gridfire::GraphEngine::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019',1,'gridfire::AdaptiveEngineView::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2',1,'gridfire::DefinedEngineView::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0',1,'gridfire::MultiscalePartitioningEngineView::mapNetInToMolarAbundanceVector()'],['../class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac',1,'PyDynamicEngine::mapNetInToMolarAbundanceVector()']]],
+  ['mapviewtofull_8',['mapViewToFull',['../classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843',1,'gridfire::DefinedEngineView']]],
+  ['mapviewtofullreactionindex_9',['mapViewToFullReactionIndex',['../classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1',1,'gridfire::DefinedEngineView']]],
+  ['mapviewtofullspeciesindex_10',['mapViewToFullSpeciesIndex',['../classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a',1,'gridfire::DefinedEngineView']]],
+  ['mesanetworkfileparser_11',['MESANetworkFileParser',['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c',1,'gridfire::io::MESANetworkFileParser']]],
+  ['miss_12',['miss',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac55fb580dd4b9763cefe4612555b03f3',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['misses_13',['misses',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5df4f2c27e9eaa781c972a8c9b595787',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['molarabundance_14',['MolarAbundance',['../structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65',1,'gridfire::NetIn']]],
+  ['multiscalepartitioningengineview_15',['MultiscalePartitioningEngineView',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f',1,'gridfire::MultiscalePartitioningEngineView']]]
 ];
diff --git a/docs/html/search/functions_b.js b/docs/html/search/functions_b.js
index 6c74fe4e..b6dbf987 100644
--- a/docs/html/search/functions_b.js
+++ b/docs/html/search/functions_b.js
@@ -1,18 +1,19 @@
 var searchData=
 [
-  ['make_5fkey_0',['make_key',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a99c80e2f4ba36e88e08e2abd650a08fb',1,'gridfire::partition::GroundStatePartitionFunction::make_key()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec',1,'gridfire::partition::RauscherThielemannPartitionFunction::make_key()']]],
-  ['mapculledtofull_1',['mapCulledToFull',['../classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1',1,'gridfire::AdaptiveEngineView']]],
-  ['mapculledtofullreactionindex_2',['mapCulledToFullReactionIndex',['../classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101',1,'gridfire::AdaptiveEngineView']]],
-  ['mapculledtofullspeciesindex_3',['mapCulledToFullSpeciesIndex',['../classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8',1,'gridfire::AdaptiveEngineView']]],
-  ['mapfulltoculled_4',['mapFullToCulled',['../classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44',1,'gridfire::AdaptiveEngineView']]],
-  ['mapfulltoview_5',['mapFullToView',['../classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873',1,'gridfire::DefinedEngineView']]],
-  ['mapnetintomolarabundancevector_6',['mapNetInToMolarAbundanceVector',['../classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a',1,'gridfire::DynamicEngine::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f',1,'gridfire::GraphEngine::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019',1,'gridfire::AdaptiveEngineView::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2',1,'gridfire::DefinedEngineView::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0',1,'gridfire::MultiscalePartitioningEngineView::mapNetInToMolarAbundanceVector()'],['../class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac',1,'PyDynamicEngine::mapNetInToMolarAbundanceVector()']]],
-  ['mapviewtofull_7',['mapViewToFull',['../classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843',1,'gridfire::DefinedEngineView']]],
-  ['mapviewtofullreactionindex_8',['mapViewToFullReactionIndex',['../classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1',1,'gridfire::DefinedEngineView']]],
-  ['mapviewtofullspeciesindex_9',['mapViewToFullSpeciesIndex',['../classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a',1,'gridfire::DefinedEngineView']]],
-  ['mesanetworkfileparser_10',['MESANetworkFileParser',['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c',1,'gridfire::io::MESANetworkFileParser']]],
-  ['miss_11',['miss',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac55fb580dd4b9763cefe4612555b03f3',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['misses_12',['misses',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5df4f2c27e9eaa781c972a8c9b595787',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['molarabundance_13',['MolarAbundance',['../structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65',1,'gridfire::NetIn']]],
-  ['multiscalepartitioningengineview_14',['MultiscalePartitioningEngineView',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f',1,'gridfire::MultiscalePartitioningEngineView']]]
+  ['n14a_5frate_0',['n14a_rate',['../namespacegridfire_1_1approx8.html#a3a9861a77093effdfc061743eb13fcdb',1,'gridfire::approx8']]],
+  ['n14p_5frate_1',['n14p_rate',['../namespacegridfire_1_1approx8.html#a34f18b2345a8fd8d96bbe1a9825c1f21',1,'gridfire::approx8']]],
+  ['n15pa_5frate_2',['n15pa_rate',['../namespacegridfire_1_1approx8.html#a9a90b83dd4aa2dcc928bd14f4678dcef',1,'gridfire::approx8']]],
+  ['n15pg_5ffrac_3',['n15pg_frac',['../namespacegridfire_1_1approx8.html#ac309c160c806208bf01bebeb29c23896',1,'gridfire::approx8']]],
+  ['n15pg_5frate_4',['n15pg_rate',['../namespacegridfire_1_1approx8.html#acdbb3ee2ef22bfd9c836324285d0da98',1,'gridfire::approx8']]],
+  ['name_5',['name',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a87fc9fe6bd8762f148c858452ec30043',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::name()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a594893c029f044be3119118808470f7a',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::name()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a290e5643eea08726d2fd44a1cd5617d0',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::name()'],['../classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7',1,'gridfire::trigger::Trigger::name()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#ab78539e5cd88194ab9e98434793eae3f',1,'gridfire::trigger::AndTrigger::name()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#a062af4f567dc48c088f1fcfb64cc79ec',1,'gridfire::trigger::OrTrigger::name()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#acc3bd2938f7746997fb1d255681d8b20',1,'gridfire::trigger::NotTrigger::name()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a4a834d24286f9204995bf78fb69f35dc',1,'gridfire::trigger::EveryNthTrigger::name()']]],
+  ['ne20a_5frate_6',['ne20a_rate',['../namespacegridfire_1_1approx8.html#ad7a6f894fa4bdeebb4cae0eba3b2c210',1,'gridfire::approx8']]],
+  ['network_7',['Network',['../classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55',1,'gridfire::Network']]],
+  ['networkprimingengineview_8',['NetworkPrimingEngineView',['../classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177',1,'gridfire::NetworkPrimingEngineView::NetworkPrimingEngineView(const std::string &amp;primingSymbol, DynamicEngine &amp;baseEngine)'],['../classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6',1,'gridfire::NetworkPrimingEngineView::NetworkPrimingEngineView(const fourdst::atomic::Species &amp;primingSpecies, DynamicEngine &amp;baseEngine)']]],
+  ['networkresizederror_9',['NetworkResizedError',['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a80c0adb088e8083309591d24051b056b',1,'gridfire::exceptions::NetworkResizedError']]],
+  ['networksolverstrategy_10',['NetworkSolverStrategy',['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505',1,'gridfire::solver::NetworkSolverStrategy']]],
+  ['nottrigger_11',['NotTrigger',['../classgridfire_1_1trigger_1_1_not_trigger.html#a4828599aae5ff37f4c82e51fe192bed3',1,'gridfire::trigger::NotTrigger']]],
+  ['num_5fspecies_12',['num_species',['../classgridfire_1_1reaction_1_1_reaction.html#ae2a1b0395ac127c792a8049cd0bcc249',1,'gridfire::reaction::Reaction::num_species()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a9205126955ad38f56e8aca3112bc150a',1,'gridfire::reaction::ReaclibReaction::num_species()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1210917ca1727ea474bb606cf8279edb',1,'gridfire::rates::weak::WeakReaction::num_species()'],['../classgridfire_1_1_reaction.html#a348aae35a6c82194ef5387278419e0e6',1,'gridfire::Reaction::num_species()']]],
+  ['nummisses_13',['numMisses',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a273eb8a3e80d1235d2b3f252e55c5b50',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::numMisses()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0e1ad148f9f3232992a4b16e440c249a',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::numMisses()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a94bb1de08a5ff55e1874f595f8c8965c',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::numMisses()'],['../classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7',1,'gridfire::trigger::Trigger::numMisses()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#addfd61f8cb234881f535fb8f4d618d74',1,'gridfire::trigger::AndTrigger::numMisses()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#a0b3a7f45604dbb27e832d9559dd20997',1,'gridfire::trigger::OrTrigger::numMisses()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#a2f9b0d6a6ac54f6371c5a208c06826ea',1,'gridfire::trigger::NotTrigger::numMisses()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae7776f4a526db3245e64a74a3b0172d3',1,'gridfire::trigger::EveryNthTrigger::numMisses()']]],
+  ['numspecies_14',['numSpecies',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c',1,'gridfire::exceptions::StaleEngineTrigger']]],
+  ['numtriggers_15',['numTriggers',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a34d285584ea96f71b99eefad8c738296',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::numTriggers()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a32980aaf6d9c7632c024b4b74b1d9e70',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::numTriggers()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad2a7c2567b100f97a024f65818ecefed',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::numTriggers()'],['../classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d',1,'gridfire::trigger::Trigger::numTriggers()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#afffb4281569963183d7db3ed1568eb3a',1,'gridfire::trigger::AndTrigger::numTriggers()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#afc7d3eae8306ee383d76997ac3803327',1,'gridfire::trigger::OrTrigger::numTriggers()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#ae2d27d72af9e1fbf711a58e4583b43a3',1,'gridfire::trigger::NotTrigger::numTriggers()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a7e5568c9d7799b7f80ad0d3efe2cd143',1,'gridfire::trigger::EveryNthTrigger::numTriggers()']]]
 ];
diff --git a/docs/html/search/functions_c.js b/docs/html/search/functions_c.js
index 24076055..e319dfd8 100644
--- a/docs/html/search/functions_c.js
+++ b/docs/html/search/functions_c.js
@@ -1,15 +1,16 @@
 var searchData=
 [
-  ['n14a_5frate_0',['n14a_rate',['../namespacegridfire_1_1approx8.html#a3a9861a77093effdfc061743eb13fcdb',1,'gridfire::approx8']]],
-  ['n14p_5frate_1',['n14p_rate',['../namespacegridfire_1_1approx8.html#a34f18b2345a8fd8d96bbe1a9825c1f21',1,'gridfire::approx8']]],
-  ['n15pa_5frate_2',['n15pa_rate',['../namespacegridfire_1_1approx8.html#a9a90b83dd4aa2dcc928bd14f4678dcef',1,'gridfire::approx8']]],
-  ['n15pg_5ffrac_3',['n15pg_frac',['../namespacegridfire_1_1approx8.html#ac309c160c806208bf01bebeb29c23896',1,'gridfire::approx8']]],
-  ['n15pg_5frate_4',['n15pg_rate',['../namespacegridfire_1_1approx8.html#acdbb3ee2ef22bfd9c836324285d0da98',1,'gridfire::approx8']]],
-  ['ne20a_5frate_5',['ne20a_rate',['../namespacegridfire_1_1approx8.html#ad7a6f894fa4bdeebb4cae0eba3b2c210',1,'gridfire::approx8']]],
-  ['network_6',['Network',['../classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55',1,'gridfire::Network']]],
-  ['networkprimingengineview_7',['NetworkPrimingEngineView',['../classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177',1,'gridfire::NetworkPrimingEngineView::NetworkPrimingEngineView(const std::string &amp;primingSymbol, DynamicEngine &amp;baseEngine)'],['../classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6',1,'gridfire::NetworkPrimingEngineView::NetworkPrimingEngineView(const fourdst::atomic::Species &amp;primingSpecies, DynamicEngine &amp;baseEngine)']]],
-  ['networkresizederror_8',['NetworkResizedError',['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a80c0adb088e8083309591d24051b056b',1,'gridfire::exceptions::NetworkResizedError']]],
-  ['networksolverstrategy_9',['NetworkSolverStrategy',['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505',1,'gridfire::solver::NetworkSolverStrategy']]],
-  ['num_5fspecies_10',['num_species',['../classgridfire_1_1reaction_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97',1,'gridfire::reaction::Reaction::num_species()'],['../classgridfire_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97',1,'gridfire::Reaction::num_species()']]],
-  ['numspecies_11',['numSpecies',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c',1,'gridfire::exceptions::StaleEngineTrigger']]]
+  ['o16a_5frate_0',['o16a_rate',['../namespacegridfire_1_1approx8.html#a7387008e672ea12d277e2194745a4c93',1,'gridfire::approx8']]],
+  ['o16p_5frate_1',['o16p_rate',['../namespacegridfire_1_1approx8.html#a62c2f567dc1ada3816843c8586aad0dc',1,'gridfire::approx8']]],
+  ['offdiagonaltrigger_2',['OffDiagonalTrigger',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a6dc334b85ffb822880c6740dc457ea52',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger']]],
+  ['operator_20std_3a_3astring_3',['string',['../structgridfire_1_1expectations_1_1_stale_engine_error.html#ad8ba0f62a2da0d93aba429181e7e6f84',1,'gridfire::expectations::StaleEngineError']]],
+  ['operator_21_3d_4',['operator!=',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup::operator!=()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8b6008e0f629329bfc62256f4f081b77',1,'gridfire::reaction::ReaclibReaction::operator!=()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8',1,'gridfire::reaction::ReactionSet::operator!=()'],['../classgridfire_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8',1,'gridfire::ReactionSet::operator!=()']]],
+  ['operator_28_29_5',['operator()',['../structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa',1,'gridfire::approx8::Jacobian::operator()()'],['../structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0',1,'gridfire::approx8::ODE::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3',1,'std::hash&lt; gridfire::QSECacheKey &gt;::operator()()'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9',1,'std::hash&lt; gridfire::reaction::Reaction &gt;::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921',1,'std::hash&lt; gridfire::reaction::ReactionSet &gt;::operator()()']]],
+  ['operator_3c_6',['operator&lt;',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+  ['operator_3c_3c_7',['operator&lt;&lt;',['../namespacegridfire_1_1reaclib.html#a6bb94d5adc7bb9db5a67f770f7453e63',1,'gridfire::reaclib']]],
+  ['operator_3d_8',['operator=',['../classgridfire_1_1reaction_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a',1,'gridfire::reaction::ReactionSet::operator=()'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af500df838024c82724eaf7fe1cb9b8e8',1,'gridfire::solver::CVODESolverStrategy::operator=(const CVODESolverStrategy &amp;)=delete'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ad26879fafcee9ecb21cc7c5ac0db1692',1,'gridfire::solver::CVODESolverStrategy::operator=(CVODESolverStrategy &amp;&amp;)=delete'],['../classgridfire_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a',1,'gridfire::ReactionSet::operator=()']]],
+  ['operator_3d_3d_9',['operator==',['../structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81',1,'gridfire::QSECacheKey::operator==()'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup::operator==()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae7c930525db447e39b4de18fbc1251a8',1,'gridfire::reaction::ReaclibReaction::operator==()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135',1,'gridfire::reaction::ReactionSet::operator==()'],['../classgridfire_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135',1,'gridfire::ReactionSet::operator==()']]],
+  ['operator_3e_10',['operator&gt;',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+  ['operator_5b_5d_11',['operator[]',['../classgridfire_1_1reaction_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b',1,'gridfire::reaction::ReactionSet::operator[](size_t index) const'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a896b4e492ef596d9174aeda4b59c46cd',1,'gridfire::reaction::ReactionSet::operator[](const std::string_view &amp;id) const'],['../classgridfire_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b',1,'gridfire::ReactionSet::operator[](size_t index) const'],['../classgridfire_1_1_reaction_set.html#a896b4e492ef596d9174aeda4b59c46cd',1,'gridfire::ReactionSet::operator[](const std::string_view &amp;id) const']]],
+  ['ortrigger_12',['OrTrigger',['../classgridfire_1_1trigger_1_1_or_trigger.html#aaf4f8a090bdd10eeba0b7849fa8ed888',1,'gridfire::trigger::OrTrigger']]]
 ];
diff --git a/docs/html/search/functions_d.js b/docs/html/search/functions_d.js
index 7bce4391..8fc35fa1 100644
--- a/docs/html/search/functions_d.js
+++ b/docs/html/search/functions_d.js
@@ -1,15 +1,21 @@
 var searchData=
 [
-  ['o16a_5frate_0',['o16a_rate',['../namespacegridfire_1_1approx8.html#a7387008e672ea12d277e2194745a4c93',1,'gridfire::approx8']]],
-  ['o16p_5frate_1',['o16p_rate',['../namespacegridfire_1_1approx8.html#a62c2f567dc1ada3816843c8586aad0dc',1,'gridfire::approx8']]],
-  ['observe_2',['observe',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a226b007bfc9960b5c0bb7b88b4f122da',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
-  ['operator_20std_3a_3astring_3',['string',['../structgridfire_1_1expectations_1_1_stale_engine_error.html#ad8ba0f62a2da0d93aba429181e7e6f84',1,'gridfire::expectations::StaleEngineError']]],
-  ['operator_21_3d_4',['operator!=',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup::operator!=()'],['../classgridfire_1_1reaction_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51',1,'gridfire::reaction::Reaction::operator!=()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#aac76ec883b4ecebb2a94b2485dae7105',1,'gridfire::reaction::TemplatedReactionSet::operator!=()'],['../classgridfire_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51',1,'gridfire::Reaction::operator!=()']]],
-  ['operator_28_29_5',['operator()',['../structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa',1,'gridfire::approx8::Jacobian::operator()()'],['../structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0',1,'gridfire::approx8::ODE::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3',1,'std::hash&lt; gridfire::QSECacheKey &gt;::operator()()'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::operator()()'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aec8c0a0b2fbb71cebb40c263f64385b3',1,'gridfire::solver::DirectNetworkSolver::RHSManager::operator()()'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9',1,'std::hash&lt; gridfire::reaction::Reaction &gt;::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921',1,'std::hash&lt; gridfire::reaction::ReactionSet &gt;::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html#a4b76e7119050266952ded94d6f0544cb',1,'std::hash&lt; gridfire::reaction::LogicalReactionSet &gt;::operator()()']]],
-  ['operator_3c_6',['operator&lt;',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
-  ['operator_3c_3c_7',['operator&lt;&lt;',['../namespacegridfire_1_1reaclib.html#a6bb94d5adc7bb9db5a67f770f7453e63',1,'gridfire::reaclib']]],
-  ['operator_3d_8',['operator=',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac510dce14a6033551318c0c7b241f3c8',1,'gridfire::reaction::TemplatedReactionSet']]],
-  ['operator_3d_3d_9',['operator==',['../structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81',1,'gridfire::QSECacheKey::operator==()'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup::operator==()'],['../classgridfire_1_1reaction_1_1_reaction.html#ac426457cf0a54a15b206549422083bac',1,'gridfire::reaction::Reaction::operator==()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a128660f5fbc67054f73811ed2982d24d',1,'gridfire::reaction::TemplatedReactionSet::operator==()'],['../classgridfire_1_1_reaction.html#ac426457cf0a54a15b206549422083bac',1,'gridfire::Reaction::operator==()']]],
-  ['operator_3e_10',['operator&gt;',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
-  ['operator_5b_5d_11',['operator[]',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a638067a3e55ec2a422206055881aaaad',1,'gridfire::reaction::TemplatedReactionSet::operator[](size_t index) const'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a13e003529a17fa61aafdce3abd2dc773',1,'gridfire::reaction::TemplatedReactionSet::operator[](const std::string_view &amp;id) const']]]
+  ['pack_5fisotope_5fid_0',['pack_isotope_id',['../classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ac73e9476c89ec7066999b0986bc0d9c1',1,'gridfire::rates::weak::WeakRateInterpolator']]],
+  ['packreactionset_1',['packReactionSet',['../namespacegridfire_1_1reaction.html#af34403cccdb4a091e979f0f895be2f8c',1,'gridfire::reaction']]],
+  ['parse_2',['parse',['../classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf',1,'gridfire::io::NetworkFileParser::parse()'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8',1,'gridfire::io::SimpleReactionListFileParser::parse()'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329',1,'gridfire::io::MESANetworkFileParser::parse()'],['../class_py_network_file_parser.html#afe09d1e5b07110e62cf4c6ec713cff54',1,'PyNetworkFileParser::parse()']]],
+  ['parsespeciesstring_3',['parseSpeciesString',['../namespacegridfire_1_1reaclib.html#afc0deac6cbef076e8884e66fd3ab66e0',1,'gridfire::reaclib']]],
+  ['partitionbytimescale_4',['partitionByTimescale',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['partitionnetwork_5',['partitionNetwork',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c327a40d7c667043826002975baa2b4',1,'gridfire::MultiscalePartitioningEngineView::partitionNetwork(const fourdst::composition::Composition &amp;comp, double T9, double rho)'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7',1,'gridfire::MultiscalePartitioningEngineView::partitionNetwork(const NetIn &amp;netIn)']]],
+  ['pename_6',['peName',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#af775f97f4d5e144e33bc6e0ba58a5851',1,'gridfire::reaction::ReaclibReaction']]],
+  ['populatereactionidmap_7',['populateReactionIDMap',['../classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567',1,'gridfire::GraphEngine']]],
+  ['populatespeciestoindexmap_8',['populateSpeciesToIndexMap',['../classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391',1,'gridfire::GraphEngine']]],
+  ['pp_5frate_9',['pp_rate',['../namespacegridfire_1_1approx8.html#a16739298c01e56967ce784a9a957439f',1,'gridfire::approx8']]],
+  ['precomputenetwork_10',['precomputeNetwork',['../classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd',1,'gridfire::GraphEngine']]],
+  ['primeengine_11',['primeEngine',['../classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e',1,'gridfire::DynamicEngine::primeEngine()'],['../classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e',1,'gridfire::GraphEngine::primeEngine()'],['../classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3',1,'gridfire::AdaptiveEngineView::primeEngine()'],['../classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460',1,'gridfire::DefinedEngineView::primeEngine()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235',1,'gridfire::MultiscalePartitioningEngineView::primeEngine()'],['../class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878',1,'PyDynamicEngine::primeEngine()']]],
+  ['primenetwork_12',['primeNetwork',['../namespacegridfire.html#a3cd451f4b7a7bc7c2d7007ebb343e9ac',1,'gridfire']]],
+  ['printwhy_13',['printWhy',['../namespacegridfire_1_1trigger.html#a5e0fe21f3356426f26b109cdeb1edcd9',1,'gridfire::trigger']]],
+  ['product_5fspecies_14',['product_species',['../classgridfire_1_1reaction_1_1_reaction.html#a0d16572ae2b664374d32ee6c4e22123a',1,'gridfire::reaction::Reaction::product_species()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a67c8fa4d5929c7a8cbca9b3d9dd2b704',1,'gridfire::reaction::ReaclibReaction::product_species()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a5c60feacb0ac48b35323d9f688315316',1,'gridfire::rates::weak::WeakReaction::product_species()'],['../classgridfire_1_1_reaction.html#ac2306d841bad605b7c9ae104397cec0f',1,'gridfire::Reaction::product_species()']]],
+  ['products_15',['products',['../classgridfire_1_1reaction_1_1_reaction.html#a3d7451045d8df41ea98b5e419e0e5ab0',1,'gridfire::reaction::Reaction::products()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a5f563b99bb550d5bafa2a989502de019',1,'gridfire::reaction::ReaclibReaction::products()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aed0ea28ed3ba96a9f86aa9db947ec01c',1,'gridfire::rates::weak::WeakReaction::products()'],['../classgridfire_1_1_reaction.html#ac2918935929030e8d218dc8d107a78f9',1,'gridfire::Reaction::products()']]],
+  ['pybind11_5fmodule_16',['PYBIND11_MODULE',['../bindings_8cpp.html#aa8955e3a8d1ea2d94e8a2c941a12c03f',1,'bindings.cpp']]],
+  ['pydynamicnetworksolverstrategy_17',['PyDynamicNetworkSolverStrategy',['../class_py_dynamic_network_solver_strategy.html#a4a3fce2a9853e7192354834bf2b36159',1,'PyDynamicNetworkSolverStrategy']]]
 ];
diff --git a/docs/html/search/functions_e.js b/docs/html/search/functions_e.js
index 1a8ac55a..bc98a9e4 100644
--- a/docs/html/search/functions_e.js
+++ b/docs/html/search/functions_e.js
@@ -1,19 +1,5 @@
 var searchData=
 [
-  ['packreactionsettologicalreactionset_0',['packReactionSetToLogicalReactionSet',['../namespacegridfire_1_1reaction.html#abfcfafc0cda0c3ed56930a12e7ead67f',1,'gridfire::reaction']]],
-  ['parse_1',['parse',['../classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf',1,'gridfire::io::NetworkFileParser::parse()'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8',1,'gridfire::io::SimpleReactionListFileParser::parse()'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329',1,'gridfire::io::MESANetworkFileParser::parse()'],['../class_py_network_file_parser.html#afe09d1e5b07110e62cf4c6ec713cff54',1,'PyNetworkFileParser::parse()']]],
-  ['parsespeciesstring_2',['parseSpeciesString',['../namespacegridfire_1_1reaclib.html#afc0deac6cbef076e8884e66fd3ab66e0',1,'gridfire::reaclib']]],
-  ['partitionbytimescale_3',['partitionByTimescale',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ad4d29ee55f89384807616d1068797067',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['partitionnetwork_4',['partitionNetwork',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c',1,'gridfire::MultiscalePartitioningEngineView::partitionNetwork(const std::vector&lt; double &gt; &amp;Y, double T9, double rho)'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7',1,'gridfire::MultiscalePartitioningEngineView::partitionNetwork(const NetIn &amp;netIn)']]],
-  ['pename_5',['peName',['../classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97',1,'gridfire::reaction::Reaction::peName()'],['../classgridfire_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97',1,'gridfire::Reaction::peName()']]],
-  ['populatereactionidmap_6',['populateReactionIDMap',['../classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567',1,'gridfire::GraphEngine']]],
-  ['populatespeciestoindexmap_7',['populateSpeciesToIndexMap',['../classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391',1,'gridfire::GraphEngine']]],
-  ['pp_5frate_8',['pp_rate',['../namespacegridfire_1_1approx8.html#a16739298c01e56967ce784a9a957439f',1,'gridfire::approx8']]],
-  ['precomputenetwork_9',['precomputeNetwork',['../classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd',1,'gridfire::GraphEngine']]],
-  ['primeengine_10',['primeEngine',['../classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e',1,'gridfire::DynamicEngine::primeEngine()'],['../classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e',1,'gridfire::GraphEngine::primeEngine()'],['../classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3',1,'gridfire::AdaptiveEngineView::primeEngine()'],['../classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460',1,'gridfire::DefinedEngineView::primeEngine()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235',1,'gridfire::MultiscalePartitioningEngineView::primeEngine()'],['../class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878',1,'PyDynamicEngine::primeEngine()']]],
-  ['primenetwork_11',['primeNetwork',['../namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f',1,'gridfire']]],
-  ['product_5fspecies_12',['product_species',['../classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c',1,'gridfire::reaction::Reaction::product_species()'],['../classgridfire_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c',1,'gridfire::Reaction::product_species()']]],
-  ['products_13',['products',['../classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02',1,'gridfire::reaction::Reaction::products()'],['../classgridfire_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02',1,'gridfire::Reaction::products()']]],
-  ['pybind11_5fmodule_14',['PYBIND11_MODULE',['../bindings_8cpp.html#aa8955e3a8d1ea2d94e8a2c941a12c03f',1,'bindings.cpp']]],
-  ['pydynamicnetworksolverstrategy_15',['PyDynamicNetworkSolverStrategy',['../class_py_dynamic_network_solver_strategy.html#a4a3fce2a9853e7192354834bf2b36159',1,'PyDynamicNetworkSolverStrategy']]]
+  ['qsecachekey_0',['QSECacheKey',['../structgridfire_1_1_q_s_e_cache_key.html#a3078528fc69b8e687448d3108a216c03',1,'gridfire::QSECacheKey']]],
+  ['qvalue_1',['qValue',['../classgridfire_1_1reaction_1_1_reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c',1,'gridfire::reaction::Reaction::qValue()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae47931948f12816eb890c0db4fff4d68',1,'gridfire::reaction::ReaclibReaction::qValue()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#afedb724bf9f1c8fc91d853f2bedb10cb',1,'gridfire::rates::weak::WeakReaction::qValue()'],['../classgridfire_1_1_reaction.html#a11c714febaf818f1d4d6c19a064d707e',1,'gridfire::Reaction::qValue()']]]
 ];
diff --git a/docs/html/search/functions_f.js b/docs/html/search/functions_f.js
index f8f477e5..bcc31550 100644
--- a/docs/html/search/functions_f.js
+++ b/docs/html/search/functions_f.js
@@ -1,5 +1,37 @@
 var searchData=
 [
-  ['qsecachekey_0',['QSECacheKey',['../structgridfire_1_1_q_s_e_cache_key.html#a3078528fc69b8e687448d3108a216c03',1,'gridfire::QSECacheKey']]],
-  ['qvalue_1',['qValue',['../classgridfire_1_1reaction_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8',1,'gridfire::reaction::Reaction::qValue()'],['../classgridfire_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8',1,'gridfire::Reaction::qValue()']]]
+  ['rate_5ffit_0',['rate_fit',['../namespacegridfire_1_1approx8.html#aed8175751b4920a53922f87f8c0e63c4',1,'gridfire::approx8']]],
+  ['ratecoefficients_1',['rateCoefficients',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#adfed51cf788a7ed4770cbd5945ddab2f',1,'gridfire::reaction::ReaclibReaction']]],
+  ['rauscherthielemannpartitionfunction_2',['RauscherThielemannPartitionFunction',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+  ['reaclibreaction_3',['ReaclibReaction',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a264112a230817a6080c770686e5bcc01',1,'gridfire::reaction::ReaclibReaction']]],
+  ['reactant_5fspecies_4',['reactant_species',['../classgridfire_1_1reaction_1_1_reaction.html#a82c14096308cdc9126ab6d9667febcd2',1,'gridfire::reaction::Reaction::reactant_species()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad85ca288289b25d482cbb8e3ff270028',1,'gridfire::reaction::ReaclibReaction::reactant_species()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aae06ff559026e3ce242a42cdd888c5a0',1,'gridfire::rates::weak::WeakReaction::reactant_species()'],['../classgridfire_1_1_reaction.html#a4be8440aa7e79eab1d44b5d83bcdab79',1,'gridfire::Reaction::reactant_species()']]],
+  ['reactants_5',['reactants',['../classgridfire_1_1reaction_1_1_reaction.html#ac7b08c61cdc97268b9442afec4d08dad',1,'gridfire::reaction::Reaction::reactants()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#ad095aba46860fec0e68386bf04f7f142',1,'gridfire::reaction::ReaclibReaction::reactants()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1362d46630f30203027093e35883d1b1',1,'gridfire::rates::weak::WeakReaction::reactants()'],['../classgridfire_1_1_reaction.html#a0c533797f18c2fe4945f1afb3fb06d5d',1,'gridfire::Reaction::reactants()']]],
+  ['reactionset_6',['ReactionSet',['../classgridfire_1_1reaction_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de',1,'gridfire::reaction::ReactionSet::ReactionSet(std::vector&lt; std::unique_ptr&lt; Reaction &gt; &gt; &amp;&amp;reactions)'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a789dee5d93810b85062e59508fe0adea',1,'gridfire::reaction::ReactionSet::ReactionSet(const std::vector&lt; Reaction * &gt; &amp;reactions)'],['../classgridfire_1_1reaction_1_1_reaction_set.html#ab9edff40316b42ce41b2f895962c1041',1,'gridfire::reaction::ReactionSet::ReactionSet()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#acfe2341ae1f016ad82098b6f5a1efc45',1,'gridfire::reaction::ReactionSet::ReactionSet(const ReactionSet &amp;other)'],['../classgridfire_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de',1,'gridfire::ReactionSet::ReactionSet(std::vector&lt; std::unique_ptr&lt; Reaction &gt; &gt; &amp;&amp;reactions)'],['../classgridfire_1_1_reaction_set.html#a789dee5d93810b85062e59508fe0adea',1,'gridfire::ReactionSet::ReactionSet(const std::vector&lt; Reaction * &gt; &amp;reactions)'],['../classgridfire_1_1_reaction_set.html#ab9edff40316b42ce41b2f895962c1041',1,'gridfire::ReactionSet::ReactionSet()'],['../classgridfire_1_1_reaction_set.html#acfe2341ae1f016ad82098b6f5a1efc45',1,'gridfire::ReactionSet::ReactionSet(const ReactionSet &amp;other)']]],
+  ['rebuild_7',['rebuild',['../classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf',1,'gridfire::DynamicEngine::rebuild()'],['../classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490',1,'gridfire::GraphEngine::rebuild()'],['../class_py_dynamic_engine.html#a3d30a9116825ab2c5c209bc2712126bc',1,'PyDynamicEngine::rebuild()']]],
+  ['recordadtape_8',['recordADTape',['../classgridfire_1_1_graph_engine.html#ab29ef3225c8fcda012b10765df064b63',1,'gridfire::GraphEngine']]],
+  ['recordepsadtape_9',['recordEpsADTape',['../classgridfire_1_1_graph_engine.html#a16b8cd1b0e19b4d4519596a4e22eaf5c',1,'gridfire::GraphEngine']]],
+  ['register_5fbase_5fengine_5fbindings_10',['register_base_engine_bindings',['../engine_2bindings_8cpp.html#a766b8bf2c08f2e81486752261ec89642',1,'register_base_engine_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a766b8bf2c08f2e81486752261ec89642',1,'register_base_engine_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5fcomposite_5fpartition_5fbindings_11',['register_composite_partition_bindings',['../partition_2bindings_8cpp.html#a9d0d58ff2233e31a4ad88cc418b5ca64',1,'register_composite_partition_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#a9d0d58ff2233e31a4ad88cc418b5ca64',1,'register_composite_partition_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5fengine_5fbindings_12',['register_engine_bindings',['../engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c',1,'register_engine_bindings(py::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#a73a2ec4150b3954550f16b97102ec993',1,'register_engine_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
+  ['register_5fengine_5fview_5fbindings_13',['register_engine_view_bindings',['../engine_2bindings_8cpp.html#ac12de48f4164b679dd7afb03c83ec4bf',1,'register_engine_view_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../engine_2bindings_8h.html#ac12de48f4164b679dd7afb03c83ec4bf',1,'register_engine_view_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5fexception_5fbindings_14',['register_exception_bindings',['../exceptions_2bindings_8cpp.html#a5566602745756f64f21905217b6d21fd',1,'register_exception_bindings(const py::module &amp;m):&#160;bindings.cpp'],['../exceptions_2bindings_8h.html#a2a0ce1da699ce25f3afdce57cde65471',1,'register_exception_bindings(const pybind11::module &amp;m):&#160;bindings.h']]],
+  ['register_5fexpectation_5fbindings_15',['register_expectation_bindings',['../expectations_2bindings_8cpp.html#ad8b382f2ef7888e5b49bcc117439d843',1,'register_expectation_bindings(const py::module &amp;m):&#160;bindings.cpp'],['../expectations_2bindings_8h.html#ac4570540d44fb7e3136f63448fc2c22c',1,'register_expectation_bindings(const pybind11::module &amp;m):&#160;bindings.h']]],
+  ['register_5fground_5fstate_5fpartition_5fbindings_16',['register_ground_state_partition_bindings',['../partition_2bindings_8cpp.html#ac0a1def5c77c5554187c9d4f26fce77e',1,'register_ground_state_partition_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#ac0a1def5c77c5554187c9d4f26fce77e',1,'register_ground_state_partition_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5fio_5fbindings_17',['register_io_bindings',['../io_2bindings_8cpp.html#a3f76dbefdeeb3b49828ce36586899695',1,'register_io_bindings(const py::module &amp;m) -&gt; void:&#160;bindings.cpp'],['../io_2bindings_8h.html#aba28f9bd688764ab1905af9d40d4b428',1,'register_io_bindings(const pybind11::module &amp;m):&#160;bindings.h']]],
+  ['register_5fpartition_5fbindings_18',['register_partition_bindings',['../partition_2bindings_8cpp.html#a2806baaec82e0e6d66b80348584e08fd',1,'register_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#a2806baaec82e0e6d66b80348584e08fd',1,'register_partition_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5fpartition_5ftypes_5fbindings_19',['register_partition_types_bindings',['../partition_2bindings_8cpp.html#a4c0db94b56a3b02482ac4fd654680cca',1,'register_partition_types_bindings(pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#a4c0db94b56a3b02482ac4fd654680cca',1,'register_partition_types_bindings(pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5frauscher_5fthielemann_5fpartition_5fbindings_20',['register_rauscher_thielemann_partition_bindings',['../partition_2bindings_8cpp.html#ae1665331725ff38c39d7d3eec551ec97',1,'register_rauscher_thielemann_partition_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#ae1665331725ff38c39d7d3eec551ec97',1,'register_rauscher_thielemann_partition_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5frauscher_5fthielemann_5fpartition_5fdata_5frecord_5fbindings_21',['register_rauscher_thielemann_partition_data_record_bindings',['../partition_2bindings_8cpp.html#a294e2893e79c41c10f914467d4858c1a',1,'register_rauscher_thielemann_partition_data_record_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../partition_2bindings_8h.html#a294e2893e79c41c10f914467d4858c1a',1,'register_rauscher_thielemann_partition_data_record_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5freaction_5fbindings_22',['register_reaction_bindings',['../reaction_2bindings_8cpp.html#ae174b115814ec42920a799881cef1efa',1,'register_reaction_bindings(py::module &amp;m):&#160;bindings.cpp'],['../reaction_2bindings_8h.html#a221d509fd54278898e2cbb73663f53d0',1,'register_reaction_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
+  ['register_5fscreening_5fbindings_23',['register_screening_bindings',['../screening_2bindings_8cpp.html#a4fcef69d9382bfbc315cb061038627f4',1,'register_screening_bindings(py::module &amp;m):&#160;bindings.cpp'],['../screening_2bindings_8h.html#a9e1a938ffee0a1b9d913fa4968865b1b',1,'register_screening_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
+  ['register_5fsolver_5fbindings_24',['register_solver_bindings',['../solver_2bindings_8cpp.html#a722d28831d82cd075081fcf4b403479d',1,'register_solver_bindings(const py::module &amp;m):&#160;bindings.cpp'],['../solver_2bindings_8h.html#a7ff40d9e08fcb5028e914045447d46d3',1,'register_solver_bindings(const pybind11::module &amp;m):&#160;bindings.h']]],
+  ['register_5ftype_5fbindings_25',['register_type_bindings',['../types_2bindings_8cpp.html#aa0589677938fad59ffce3f6981f53ff0',1,'register_type_bindings(const pybind11::module &amp;m):&#160;bindings.cpp'],['../types_2bindings_8h.html#aa0589677938fad59ffce3f6981f53ff0',1,'register_type_bindings(const pybind11::module &amp;m):&#160;bindings.cpp']]],
+  ['register_5futils_5fbindings_26',['register_utils_bindings',['../utils_2bindings_8cpp.html#a7af842f50ca4a721518e716d0229697c',1,'register_utils_bindings(py::module &amp;m):&#160;bindings.cpp'],['../utils_2bindings_8h.html#a9eefca377142320755a869fafc6311c7',1,'register_utils_bindings(pybind11::module &amp;m):&#160;bindings.h']]],
+  ['remove_5freaction_27',['remove_reaction',['../classgridfire_1_1reaction_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd',1,'gridfire::reaction::ReactionSet::remove_reaction()'],['../classgridfire_1_1_reaction_set.html#a1177193b1e46b4e5be630028883ab8dd',1,'gridfire::ReactionSet::remove_reaction()']]],
+  ['report_5flimiting_5fspecies_28',['report_limiting_species',['../namespacegridfire_1_1diagnostics.html#a9d95a6c9c4a942d71ff4c8046fe4107a',1,'gridfire::diagnostics']]],
+  ['rescueedgespeciesdestructionchannel_29',['rescueEdgeSpeciesDestructionChannel',['../classgridfire_1_1_adaptive_engine_view.html#a0439f464865b4c01bad0f6be6055c3fc',1,'gridfire::AdaptiveEngineView']]],
+  ['reservejacobianmatrix_30',['reserveJacobianMatrix',['../classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5',1,'gridfire::GraphEngine']]],
+  ['reset_31',['reset',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#af4034fa431e6c88fd05c50cce31b2fa0',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::reset()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a9b782cbf033ed2023da6b2d55dcefc4e',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::reset()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a0fe6af73b11b820561bd4e5552890d4e',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::reset()'],['../classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d',1,'gridfire::trigger::Trigger::reset()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#a2436d8643911ade907e03fb29531ceaa',1,'gridfire::trigger::AndTrigger::reset()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#ab42043e55c81bac5d3f981bc139579de',1,'gridfire::trigger::OrTrigger::reset()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#afe337517b77e5433d92ded3a64565141',1,'gridfire::trigger::NotTrigger::reset()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#abf218d255bde157540b51cd6a54f6eb1',1,'gridfire::trigger::EveryNthTrigger::reset()']]],
+  ['rev_5fsparse_5fjac_32',['rev_sparse_jac',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4',1,'gridfire::GraphEngine::AtomicReverseRate::rev_sparse_jac()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae9d61bdda761da89733408c232d7220e',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::rev_sparse_jac()']]],
+  ['reverse_33',['reverse',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e',1,'gridfire::GraphEngine::AtomicReverseRate::reverse()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#aad13654ea15547c2c95035c3b7937d58',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::reverse()']]]
 ];
diff --git a/docs/html/search/namespaces_0.js b/docs/html/search/namespaces_0.js
index f3b66cb7..7b340d23 100644
--- a/docs/html/search/namespaces_0.js
+++ b/docs/html/search/namespaces_0.js
@@ -2,14 +2,20 @@ var searchData=
 [
   ['gridfire_0',['gridfire',['../namespacegridfire.html',1,'']]],
   ['gridfire_3a_3aapprox8_1',['approx8',['../namespacegridfire_1_1approx8.html',1,'gridfire']]],
-  ['gridfire_3a_3aexceptions_2',['exceptions',['../namespacegridfire_1_1exceptions.html',1,'gridfire']]],
-  ['gridfire_3a_3aexpectations_3',['expectations',['../namespacegridfire_1_1expectations.html',1,'gridfire']]],
-  ['gridfire_3a_3aio_4',['io',['../namespacegridfire_1_1io.html',1,'gridfire']]],
-  ['gridfire_3a_3apartition_5',['partition',['../namespacegridfire_1_1partition.html',1,'gridfire']]],
-  ['gridfire_3a_3apartition_3a_3arecord_6',['record',['../namespacegridfire_1_1partition_1_1record.html',1,'gridfire::partition']]],
-  ['gridfire_3a_3areaclib_7',['reaclib',['../namespacegridfire_1_1reaclib.html',1,'gridfire']]],
-  ['gridfire_3a_3areaction_8',['reaction',['../namespacegridfire_1_1reaction.html',1,'gridfire']]],
-  ['gridfire_3a_3ascreening_9',['screening',['../namespacegridfire_1_1screening.html',1,'gridfire']]],
-  ['gridfire_3a_3asolver_10',['solver',['../namespacegridfire_1_1solver.html',1,'gridfire']]],
-  ['gridfire_3a_3autils_11',['utils',['../namespacegridfire_1_1utils.html',1,'gridfire']]]
+  ['gridfire_3a_3adiagnostics_2',['diagnostics',['../namespacegridfire_1_1diagnostics.html',1,'gridfire']]],
+  ['gridfire_3a_3aexceptions_3',['exceptions',['../namespacegridfire_1_1exceptions.html',1,'gridfire']]],
+  ['gridfire_3a_3aexpectations_4',['expectations',['../namespacegridfire_1_1expectations.html',1,'gridfire']]],
+  ['gridfire_3a_3aio_5',['io',['../namespacegridfire_1_1io.html',1,'gridfire']]],
+  ['gridfire_3a_3apartition_6',['partition',['../namespacegridfire_1_1partition.html',1,'gridfire']]],
+  ['gridfire_3a_3apartition_3a_3arecord_7',['record',['../namespacegridfire_1_1partition_1_1record.html',1,'gridfire::partition']]],
+  ['gridfire_3a_3arates_8',['rates',['../namespacegridfire_1_1rates.html',1,'gridfire']]],
+  ['gridfire_3a_3arates_3a_3aweak_9',['weak',['../namespacegridfire_1_1rates_1_1weak.html',1,'gridfire::rates']]],
+  ['gridfire_3a_3areaclib_10',['reaclib',['../namespacegridfire_1_1reaclib.html',1,'gridfire']]],
+  ['gridfire_3a_3areaction_11',['reaction',['../namespacegridfire_1_1reaction.html',1,'gridfire']]],
+  ['gridfire_3a_3ascreening_12',['screening',['../namespacegridfire_1_1screening.html',1,'gridfire']]],
+  ['gridfire_3a_3asolver_13',['solver',['../namespacegridfire_1_1solver.html',1,'gridfire']]],
+  ['gridfire_3a_3atrigger_14',['trigger',['../namespacegridfire_1_1trigger.html',1,'gridfire']]],
+  ['gridfire_3a_3atrigger_3a_3asolver_15',['solver',['../namespacegridfire_1_1trigger_1_1solver.html',1,'gridfire::trigger']]],
+  ['gridfire_3a_3atrigger_3a_3asolver_3a_3acvode_16',['CVODE',['../namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html',1,'gridfire::trigger::solver']]],
+  ['gridfire_3a_3autils_17',['utils',['../namespacegridfire_1_1utils.html',1,'gridfire']]]
 ];
diff --git a/docs/html/search/related_0.js b/docs/html/search/related_0.js
index 1a47761b..03251822 100644
--- a/docs/html/search/related_0.js
+++ b/docs/html/search/related_0.js
@@ -1,4 +1,4 @@
 var searchData=
 [
-  ['operator_3c_3c_0',['operator&lt;&lt;',['../structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736',1,'gridfire::PrimingReport::operator&lt;&lt;()'],['../structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7',1,'gridfire::expectations::EngineError::operator&lt;&lt;()'],['../structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903',1,'gridfire::expectations::EngineIndexError::operator&lt;&lt;()'],['../structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b',1,'gridfire::NetOut::operator&lt;&lt;()'],['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f',1,'gridfire::reaction::RateCoefficientSet::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8',1,'gridfire::reaction::Reaction::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a10cbea11653524dae2f7eafb5c22c90f',1,'gridfire::reaction::LogicalReaction::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a47265467dbf2c324ce3e4c85ebbaa6a7',1,'gridfire::reaction::TemplatedReactionSet::operator&lt;&lt;()'],['../classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8',1,'gridfire::Reaction::operator&lt;&lt;()']]]
+  ['operator_3c_3c_0',['operator&lt;&lt;',['../structgridfire_1_1_energy_derivatives.html#aa974abdff7fe09c9aea3fcf4ae13b652',1,'gridfire::EnergyDerivatives::operator&lt;&lt;()'],['../structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736',1,'gridfire::PrimingReport::operator&lt;&lt;()'],['../structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7',1,'gridfire::expectations::EngineError::operator&lt;&lt;()'],['../structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903',1,'gridfire::expectations::EngineIndexError::operator&lt;&lt;()'],['../structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b',1,'gridfire::NetOut::operator&lt;&lt;()'],['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f',1,'gridfire::reaction::RateCoefficientSet::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8',1,'gridfire::reaction::Reaction::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae24ad1e38daab536aec6ac72c67e8615',1,'gridfire::reaction::ReaclibReaction::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a495ca800cc1dd224ce2a821a825afafd',1,'gridfire::reaction::LogicalReaclibReaction::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20',1,'gridfire::reaction::ReactionSet::operator&lt;&lt;()'],['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a5a2525ca7e7b2c812b1f67b3b0114aaf',1,'gridfire::rates::weak::WeakReactionEntry::operator&lt;&lt;()'],['../classgridfire_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20',1,'gridfire::ReactionSet::operator&lt;&lt;()'],['../classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8',1,'gridfire::Reaction::operator&lt;&lt;()']]]
 ];
diff --git a/docs/html/search/searchdata.js b/docs/html/search/searchdata.js
index bedf8fef..b13603c2 100644
--- a/docs/html/search/searchdata.js
+++ b/docs/html/search/searchdata.js
@@ -3,15 +3,16 @@ var indexSectionsWithContent =
   0: "12345:abcdefghijklmnopqrstuvwyz~",
   1: "abcdefghijlmnopqrstuw",
   2: "gs",
-  3: "bceilmnprsu",
-  4: "abcdefghijlmnopqrstuvw~",
-  5: "abcdefgiklmnopqrstuyz",
+  3: "bcdeilmnprstuw",
+  4: "abcdefghilmnopqrstuvw~",
+  5: "abcdefgiklmnopqrstuvyz",
   6: "abcdijlmopqrstv",
-  7: "benops",
-  8: "abcfgimnorstuvw",
+  7: "beinoprstw",
+  8: "abcefgilmnoprstuvw",
   9: "o",
-  10: "gpu",
-  11: "ei"
+  10: "g",
+  11: "gpu",
+  12: "ei"
 };
 
 var indexSectionNames =
@@ -26,8 +27,9 @@ var indexSectionNames =
   7: "enums",
   8: "enumvalues",
   9: "related",
-  10: "pages",
-  11: "concepts"
+  10: "defines",
+  11: "pages",
+  12: "concepts"
 };
 
 var indexSectionLabels =
@@ -42,7 +44,8 @@ var indexSectionLabels =
   7: "Enumerations",
   8: "Enumerator",
   9: "Friends",
-  10: "Pages",
-  11: "Concepts"
+  10: "Macros",
+  11: "Pages",
+  12: "Concepts"
 };
 
diff --git a/docs/html/search/typedefs_6.js b/docs/html/search/typedefs_6.js
index fe03ad28..6c6acf9f 100644
--- a/docs/html/search/typedefs_6.js
+++ b/docs/html/search/typedefs_6.js
@@ -1,5 +1,4 @@
 var searchData=
 [
-  ['logicalreactionset_0',['LogicalReactionSet',['../namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31',1,'gridfire::reaction::LogicalReactionSet'],['../namespacegridfire.html#aa86f08712565f278adacc7cd2361eb31',1,'gridfire::LogicalReactionSet']]],
-  ['logmanager_1',['LogManager',['../classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103',1,'gridfire::AdaptiveEngineView::LogManager'],['../classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08',1,'gridfire::FileDefinedEngineView::LogManager'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de',1,'gridfire::io::SimpleReactionListFileParser::LogManager'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055',1,'gridfire::io::MESANetworkFileParser::LogManager']]]
+  ['logmanager_0',['LogManager',['../classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103',1,'gridfire::AdaptiveEngineView::LogManager'],['../classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08',1,'gridfire::FileDefinedEngineView::LogManager'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de',1,'gridfire::io::SimpleReactionListFileParser::LogManager'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055',1,'gridfire::io::MESANetworkFileParser::LogManager']]]
 ];
diff --git a/docs/html/search/typedefs_b.js b/docs/html/search/typedefs_b.js
index f978b02f..133b966c 100644
--- a/docs/html/search/typedefs_b.js
+++ b/docs/html/search/typedefs_b.js
@@ -1,5 +1,5 @@
 var searchData=
 [
-  ['reactionset_0',['ReactionSet',['../namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1',1,'gridfire::reaction::ReactionSet'],['../namespacegridfire.html#ad838ce3fb6cc02c3fd90b924a0dd91b1',1,'gridfire::ReactionSet']]],
-  ['rescueset_1',['RescueSet',['../classgridfire_1_1_adaptive_engine_view.html#a4ff60b5214ec0bdaf683feb6615573a5',1,'gridfire::AdaptiveEngineView']]]
+  ['rescueset_0',['RescueSet',['../classgridfire_1_1_adaptive_engine_view.html#ac674338ddcbae4c33dd84b0441631806',1,'gridfire::AdaptiveEngineView']]],
+  ['rowdatatable_1',['RowDataTable',['../classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#afd3e0e1c5edaf12609b5fc81c379e3e5',1,'gridfire::rates::weak::WeakRateInterpolator']]]
 ];
diff --git a/docs/html/search/typedefs_d.js b/docs/html/search/typedefs_d.js
index 64e705c8..24a3d3c3 100644
--- a/docs/html/search/typedefs_d.js
+++ b/docs/html/search/typedefs_d.js
@@ -1,4 +1,4 @@
 var searchData=
 [
-  ['timestepcallback_0',['TimestepCallback',['../classgridfire_1_1solver_1_1_direct_network_solver.html#a171bd0c8c292da79ed41f6653fdd47df',1,'gridfire::solver::DirectNetworkSolver']]]
+  ['timestepcallback_0',['TimestepCallback',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a89c537c2f34ba3e202374304b7e5990a',1,'gridfire::solver::CVODESolverStrategy']]]
 ];
diff --git a/docs/html/search/variables_0.js b/docs/html/search/variables_0.js
index 0cf8742e..f6a0ba4a 100644
--- a/docs/html/search/variables_0.js
+++ b/docs/html/search/variables_0.js
@@ -1,14 +1,19 @@
 var searchData=
 [
-  ['a_0',['a',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a677505655a1c6922dfa9b32b70d7e815',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord']]],
-  ['a0_1',['a0',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2fa6b65e300dcd181222b743c2b3d6ed',1,'gridfire::reaction::RateCoefficientSet']]],
-  ['a1_2',['a1',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ace9dbd928e179784e47eaa108ce8d721',1,'gridfire::reaction::RateCoefficientSet']]],
-  ['a2_3',['a2',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2a9316d19bc2e8bf0a7872eb6fe8a53f',1,'gridfire::reaction::RateCoefficientSet']]],
-  ['a3_4',['a3',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a3d047485ebb57d6c763adfe4aae493b1',1,'gridfire::reaction::RateCoefficientSet']]],
-  ['a4_5',['a4',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ae57b2eac71cb4ed9947f40c9cb8fc3ca',1,'gridfire::reaction::RateCoefficientSet']]],
-  ['a5_6',['a5',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a8c79db4e649b4eb1d29c43ebe4e95458',1,'gridfire::reaction::RateCoefficientSet']]],
-  ['a6_7',['a6',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#adf8e6ed7f91cb9e15d1469a808b1877a',1,'gridfire::reaction::RateCoefficientSet']]],
-  ['affected_5fspecies_5findices_8',['affected_species_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3e2e67e532970738d20491ea56b170f3',1,'gridfire::GraphEngine::PrecomputedReaction']]],
-  ['aion_9',['aIon',['../structgridfire_1_1approx8_1_1_approx8_net.html#a296e54c1b22f0c5d4d07a13577c6e069',1,'gridfire::approx8::Approx8Net']]],
-  ['algebraic_5findices_10',['algebraic_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ab11be6e7afeef1ac9e4314ad8345e0b0',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]]
+  ['a_0',['A',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#aee9ee73218397780a2a7708c29779c73',1,'gridfire::rates::weak::RateDataRow']]],
+  ['a_1',['a',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a677505655a1c6922dfa9b32b70d7e815',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord']]],
+  ['a0_2',['a0',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2fa6b65e300dcd181222b743c2b3d6ed',1,'gridfire::reaction::RateCoefficientSet']]],
+  ['a1_3',['a1',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ace9dbd928e179784e47eaa108ce8d721',1,'gridfire::reaction::RateCoefficientSet']]],
+  ['a2_4',['a2',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2a9316d19bc2e8bf0a7872eb6fe8a53f',1,'gridfire::reaction::RateCoefficientSet']]],
+  ['a3_5',['a3',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a3d047485ebb57d6c763adfe4aae493b1',1,'gridfire::reaction::RateCoefficientSet']]],
+  ['a4_6',['a4',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ae57b2eac71cb4ed9947f40c9cb8fc3ca',1,'gridfire::reaction::RateCoefficientSet']]],
+  ['a5_7',['a5',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a8c79db4e649b4eb1d29c43ebe4e95458',1,'gridfire::reaction::RateCoefficientSet']]],
+  ['a6_8',['a6',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#adf8e6ed7f91cb9e15d1469a808b1877a',1,'gridfire::reaction::RateCoefficientSet']]],
+  ['affected_5fspecies_5findices_9',['affected_species_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3e2e67e532970738d20491ea56b170f3',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+  ['aion_10',['aIon',['../structgridfire_1_1approx8_1_1_approx8_net.html#a296e54c1b22f0c5d4d07a13577c6e069',1,'gridfire::approx8::Approx8Net']]],
+  ['algebraic_5fspecies_11',['algebraic_species',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#aff54b71dd17051bc991f747a328c7d8e',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+  ['amu_12',['amu',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abe06f72b5b646cb3f1462b56d94a1de4',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['axis_13',['axis',['../structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#afb2af3df6ec5ea439b5ea55571975391',1,'gridfire::rates::weak::BoundsErrorInfo']]],
+  ['axismaxvalue_14',['axisMaxValue',['../structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a6371b8f8c45a9b069b19dd968ff81b28',1,'gridfire::rates::weak::BoundsErrorInfo']]],
+  ['axisminvalue_15',['axisMinValue',['../structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a07dfb669f73b029a71eb59cbbed69f42',1,'gridfire::rates::weak::BoundsErrorInfo']]]
 ];
diff --git a/docs/html/search/variables_1.js b/docs/html/search/variables_1.js
index e0eaa046..ecb5630f 100644
--- a/docs/html/search/variables_1.js
+++ b/docs/html/search/variables_1.js
@@ -1,5 +1,6 @@
 var searchData=
 [
   ['basepartitiontypetostring_0',['basePartitionTypeToString',['../namespacegridfire_1_1partition.html#a97237521bc760f7521346f8db472dc8e',1,'gridfire::partition']]],
-  ['bound_1',['bound',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a5f673ab0425f06f3639cc9b5200ee3af',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]]
+  ['bound_1',['bound',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a5f673ab0425f06f3639cc9b5200ee3af',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]],
+  ['boundserrorinfo_2',['boundsErrorInfo',['../structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a1541a5280bd1b3f90bc62d7c0e1f80a1',1,'gridfire::rates::weak::InterpolationError']]]
 ];
diff --git a/docs/html/search/variables_10.js b/docs/html/search/variables_10.js
index 3d5e4bb5..36bacf73 100644
--- a/docs/html/search/variables_10.js
+++ b/docs/html/search/variables_10.js
@@ -1,12 +1,12 @@
 var searchData=
 [
-  ['s_5fall_5freaclib_5freactions_5fptr_0',['s_all_reaclib_reactions_ptr',['../namespacegridfire_1_1reaclib.html#a5dba5efc372d2a9e9e846dfd6563f3c0',1,'gridfire::reaclib']]],
+  ['s_5fall_5freaclib_5freactions_5fptr_0',['s_all_reaclib_reactions_ptr',['../namespacegridfire_1_1reaclib.html#a1f75b17a44c23261a221f7558b1a63d9',1,'gridfire::reaclib']]],
   ['s_5finitialized_1',['s_initialized',['../namespacegridfire_1_1reaclib.html#af6ff0dfe7ffe34c73ba9acbab5ef8a66',1,'gridfire::reaclib']]],
-  ['s_5foperator_5fparens_5fcalled_2',['s_operator_parens_called',['../namespacegridfire.html#a8b632637f62614f509cde0e404a79054',1,'gridfire']]],
-  ['seed_5findices_3',['seed_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
-  ['species_5findices_4',['species_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+  ['seed_5fspecies_2',['seed_species',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af2d7e09d940e0fb3ca24a4bc8ec01031',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+  ['solver_5finstance_3',['solver_instance',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ad7f3eb9caae25ef25357c41c23d6b392',1,'gridfire::solver::CVODESolverStrategy::CVODEUserData']]],
+  ['speedoflight_4',['speedOfLight',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a016c3e02f622e21073f9110707177b76',1,'gridfire::rates::weak::WeakReaction::constants']]],
   ['staletype_5',['staleType',['../structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590',1,'gridfire::expectations::StaleEngineError']]],
-  ['state_6',['state',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adab4b53a94b935f89f799bd5a67847a2',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
+  ['state_6',['state',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#aaae3c42b9172be4d501f022e67f5a6f6',1,'gridfire::solver::CVODESolverStrategy::TimestepContext']]],
   ['status_7',['status',['../structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d',1,'gridfire::PrimingReport']]],
   ['stoichiometric_5fcoefficients_8',['stoichiometric_coefficients',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c',1,'gridfire::GraphEngine::PrecomputedReaction']]],
   ['stringtobasepartitiontype_9',['stringToBasePartitionType',['../namespacegridfire_1_1partition.html#a84de6308486d35ce8bc1a9dea52dfa4a',1,'gridfire::partition']]],
diff --git a/docs/html/search/variables_11.js b/docs/html/search/variables_11.js
index 6081d72d..a97b1881 100644
--- a/docs/html/search/variables_11.js
+++ b/docs/html/search/variables_11.js
@@ -1,11 +1,13 @@
 var searchData=
 [
-  ['t_0',['t',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ad49305586fdc676f96161e91c6b863dd',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['t9_1',['T9',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a838fdd3dd8beac8ca7e735921230ea2d',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['t9_5fhigh_2',['T9_high',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a750aa8cd8aa8b8da6d1f0db1cc66233d',1,'gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints']]],
-  ['t9_5flow_3',['T9_low',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a48e170f77812fdbc06cff18267b241ca',1,'gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints']]],
-  ['t9_5ftol_4',['T9_tol',['../structgridfire_1_1_q_s_e_cache_config.html#af4dca2b24aa364fbbf6e99eb26774f40',1,'gridfire::QSECacheConfig']]],
-  ['temperature_5',['temperature',['../structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be',1,'gridfire::NetIn']]],
-  ['tmax_6',['tMax',['../structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1',1,'gridfire::NetIn']]],
-  ['type_7',['type',['../structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897',1,'gridfire::expectations::EngineError']]]
+  ['t_0',['t',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a0b39f0d207181840efacb64417b492ae',1,'gridfire::solver::CVODESolverStrategy::TimestepContext']]],
+  ['t9_1',['T9',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a549f4c9266722314f61d668d8507145c',1,'gridfire::rates::weak::WeakReactionEntry::T9'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a25743a21ed801ed4288309f35dc9a289',1,'gridfire::solver::CVODESolverStrategy::TimestepContext::T9'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a0b27605ac3211a1805d7910c899bbcce',1,'gridfire::solver::CVODESolverStrategy::CVODEUserData::T9']]],
+  ['t9_2',['t9',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a2344c046a615bc6ff07327d6bcfe074b',1,'gridfire::rates::weak::RateDataRow']]],
+  ['t9_5faxis_3',['t9_axis',['../structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a99da523669d85aa0a628d35a077d541c',1,'gridfire::rates::weak::IsotopeGrid']]],
+  ['t9_5fhigh_4',['T9_high',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a750aa8cd8aa8b8da6d1f0db1cc66233d',1,'gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints']]],
+  ['t9_5flow_5',['T9_low',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a48e170f77812fdbc06cff18267b241ca',1,'gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints']]],
+  ['t9_5ftol_6',['T9_tol',['../structgridfire_1_1_q_s_e_cache_config.html#af4dca2b24aa364fbbf6e99eb26774f40',1,'gridfire::QSECacheConfig']]],
+  ['temperature_7',['temperature',['../structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be',1,'gridfire::NetIn']]],
+  ['tmax_8',['tMax',['../structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1',1,'gridfire::NetIn']]],
+  ['type_9',['type',['../structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897',1,'gridfire::expectations::EngineError::type'],['../structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a086720ca534bc4c63d9341995e2f87bd',1,'gridfire::rates::weak::InterpolationError::type'],['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#ad0bb77849bda4934472675e196af87c8',1,'gridfire::rates::weak::WeakReactionEntry::type']]]
 ];
diff --git a/docs/html/search/variables_12.js b/docs/html/search/variables_12.js
index 9b4fa9b2..097a3723 100644
--- a/docs/html/search/variables_12.js
+++ b/docs/html/search/variables_12.js
@@ -1,7 +1,9 @@
 var searchData=
 [
   ['u_0',['u',['../structgridfire_1_1_graph_engine_1_1constants.html#a3597bc632a5dd50aaa0044d8c18ca423',1,'gridfire::GraphEngine::constants']]],
-  ['unique_5fproduct_5findices_1',['unique_product_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a9974f944a2cf5179baabebe09d60cf18',1,'gridfire::GraphEngine::PrecomputedReaction']]],
-  ['unique_5freactant_5findices_2',['unique_reactant_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a510e380116e2e6d9158cf00fedac2666',1,'gridfire::GraphEngine::PrecomputedReaction']]],
-  ['upperindex_3',['upperIndex',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#aa99e1fa2fd4937592c066b0df16f377f',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]]
+  ['u_5fto_5fmev_1',['u_to_MeV',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab7d46e02bb7264ff3aada6b3997b2ab1',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['unified_5fweak_5fdata_2',['UNIFIED_WEAK_DATA',['../namespacegridfire_1_1rates_1_1weak.html#ac48364695089056d9a9b10689c4338e7',1,'gridfire::rates::weak']]],
+  ['unique_5fproduct_5findices_3',['unique_product_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a9974f944a2cf5179baabebe09d60cf18',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+  ['unique_5freactant_5findices_4',['unique_reactant_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a510e380116e2e6d9158cf00fedac2666',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+  ['upperindex_5',['upperIndex',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#aa99e1fa2fd4937592c066b0df16f377f',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]]
 ];
diff --git a/docs/html/search/variables_13.js b/docs/html/search/variables_13.js
index 64cc9a97..ea25961f 100644
--- a/docs/html/search/variables_13.js
+++ b/docs/html/search/variables_13.js
@@ -1,4 +1,4 @@
 var searchData=
 [
-  ['yi_5ftol_0',['Yi_tol',['../structgridfire_1_1_q_s_e_cache_config.html#a31d3e8d1b83109524c94641ce06fa351',1,'gridfire::QSECacheConfig']]]
+  ['value_0',['value',['../structgridfire_1_1trigger_1_1_trigger_result.html#a372af12d705b623075c41872f3ec96e1',1,'gridfire::trigger::TriggerResult']]]
 ];
diff --git a/docs/html/search/variables_14.js b/docs/html/search/variables_14.js
index 1da0cb42..64cc9a97 100644
--- a/docs/html/search/variables_14.js
+++ b/docs/html/search/variables_14.js
@@ -1,4 +1,4 @@
 var searchData=
 [
-  ['z_0',['z',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#abb1416e2d8d4d27264c9eece547006b6',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord']]]
+  ['yi_5ftol_0',['Yi_tol',['../structgridfire_1_1_q_s_e_cache_config.html#a31d3e8d1b83109524c94641ce06fa351',1,'gridfire::QSECacheConfig']]]
 ];
diff --git a/docs/html/search/variables_15.js b/docs/html/search/variables_15.js
new file mode 100644
index 00000000..b9b64588
--- /dev/null
+++ b/docs/html/search/variables_15.js
@@ -0,0 +1,5 @@
+var searchData=
+[
+  ['z_0',['Z',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a318b62e183dcb49c04260832454fa721',1,'gridfire::rates::weak::RateDataRow']]],
+  ['z_1',['z',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#abb1416e2d8d4d27264c9eece547006b6',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord']]]
+];
diff --git a/docs/html/search/variables_2.js b/docs/html/search/variables_2.js
index 156fe8d6..d9572015 100644
--- a/docs/html/search/variables_2.js
+++ b/docs/html/search/variables_2.js
@@ -1,8 +1,8 @@
 var searchData=
 [
-  ['c_0',['c',['../structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306',1,'gridfire::GraphEngine::constants']]],
-  ['cached_5fresult_1',['cached_result',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adc814e5288f42c8eaf21c628858881a0',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['cached_5ftime_2',['cached_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#afaebf35ef65567a7c824d5c14d479bb3',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
+  ['c_0',['c',['../structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306',1,'gridfire::GraphEngine::constants::c'],['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab176a60ea64181d84be3bb6496ad0b0e',1,'gridfire::rates::weak::WeakReaction::constants::c']]],
+  ['captured_5fexception_1',['captured_exception',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a3e089139de2ba47e96dfe22c14d24e9e',1,'gridfire::solver::CVODESolverStrategy::CVODEUserData']]],
+  ['causes_2',['causes',['../structgridfire_1_1trigger_1_1_trigger_result.html#a7cf4d21d3cd3e53b62736932b44072cd',1,'gridfire::trigger::TriggerResult']]],
   ['chapter_3',['chapter',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc',1,'gridfire::reaclib::ReactionRecord']]],
   ['coeffs_4',['coeffs',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0',1,'gridfire::reaclib::ReactionRecord']]],
   ['composition_5',['composition',['../structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1',1,'gridfire::NetIn::composition'],['../structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a',1,'gridfire::NetOut::composition']]],
diff --git a/docs/html/search/variables_3.js b/docs/html/search/variables_3.js
index 6a6bdd3e..da0d8c61 100644
--- a/docs/html/search/variables_3.js
+++ b/docs/html/search/variables_3.js
@@ -1,8 +1,17 @@
 var searchData=
 [
-  ['data_0',['data',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]],
-  ['density_1',['density',['../structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577',1,'gridfire::NetIn']]],
-  ['dt_2',['dt',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a6a293628e61f241b9d335cd223da5f7c',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['dt0_3',['dt0',['../structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a',1,'gridfire::NetIn']]],
-  ['dydt_4',['dydt',['../structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d',1,'gridfire::StepDerivatives']]]
+  ['d_5flog_5fantineutrino_5floss_5fbd_0',['d_log_antineutrino_loss_bd',['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a87894b5fdb0323c41f8e1e179ffefd1e',1,'gridfire::rates::weak::WeakRateDerivatives']]],
+  ['d_5flog_5fbeta_5fminus_1',['d_log_beta_minus',['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a54ba76b67d037954af1cbd6052becc61',1,'gridfire::rates::weak::WeakRateDerivatives']]],
+  ['d_5flog_5fbeta_5fplus_2',['d_log_beta_plus',['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#ab79353551bc5f832c986d24384d8a53a',1,'gridfire::rates::weak::WeakRateDerivatives']]],
+  ['d_5flog_5felectron_5fcapture_3',['d_log_electron_capture',['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a5e15e3d4d03288bd6f5dfc7054120514',1,'gridfire::rates::weak::WeakRateDerivatives']]],
+  ['d_5flog_5fneutrino_5floss_5fec_4',['d_log_neutrino_loss_ec',['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a415f5ff7ee18cc241eab5fbf6a0cdc17',1,'gridfire::rates::weak::WeakRateDerivatives']]],
+  ['d_5flog_5fpositron_5fcapture_5',['d_log_positron_capture',['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a3cf82898078fcc9aa69344b4d2cf8783',1,'gridfire::rates::weak::WeakRateDerivatives']]],
+  ['data_6',['data',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope::data'],['../structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#ad0df5ef84e3a78d881838a3bb014db83',1,'gridfire::rates::weak::IsotopeGrid::data']]],
+  ['density_7',['density',['../structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577',1,'gridfire::NetIn']]],
+  ['deps_5fdrho_8',['dEps_dRho',['../structgridfire_1_1_energy_derivatives.html#adc09db042b1fdee7468c807491245046',1,'gridfire::EnergyDerivatives::dEps_dRho'],['../structgridfire_1_1_net_out.html#ad0bde670fb87bcab4de413e8284d624e',1,'gridfire::NetOut::dEps_dRho']]],
+  ['deps_5fdt_9',['dEps_dT',['../structgridfire_1_1_energy_derivatives.html#a70ae455c021a950fda7bda3022456542',1,'gridfire::EnergyDerivatives::dEps_dT'],['../structgridfire_1_1_net_out.html#a210c0c395bc012c8ce6bef8cc6b683d6',1,'gridfire::NetOut::dEps_dT']]],
+  ['description_10',['description',['../structgridfire_1_1trigger_1_1_trigger_result.html#aaf99ffdeb73f5e792e61c4cca68aa157',1,'gridfire::trigger::TriggerResult']]],
+  ['dt_11',['dt',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a6442d15673e6385bb6fdd11e1179c487',1,'gridfire::solver::CVODESolverStrategy::TimestepContext']]],
+  ['dt0_12',['dt0',['../structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a',1,'gridfire::NetIn']]],
+  ['dydt_13',['dydt',['../structgridfire_1_1_step_derivatives.html#a1ae99ac1684d8df519f8d6af413d2cb1',1,'gridfire::StepDerivatives']]]
 ];
diff --git a/docs/html/search/variables_4.js b/docs/html/search/variables_4.js
index 69db36b6..3de6b887 100644
--- a/docs/html/search/variables_4.js
+++ b/docs/html/search/variables_4.js
@@ -1,5 +1,8 @@
 var searchData=
 [
-  ['energy_0',['energy',['../structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b',1,'gridfire::NetIn::energy'],['../structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6',1,'gridfire::NetOut::energy']]],
-  ['engine_1',['engine',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a53985d354dcaeda96dc39828c6c9d9d1',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]]
+  ['electronmassg_0',['electronMassG',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8998f5acb979463eeabb14da50fb6856',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['electronmassmev_1',['electronMassMeV',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a24d6517e15c177fb8ca72f08f8eaf509',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['energy_2',['energy',['../structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b',1,'gridfire::NetIn::energy'],['../structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6',1,'gridfire::NetOut::energy'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a1fb4ca773aaad8d1d958a3a0e82d8edd',1,'gridfire::solver::CVODESolverStrategy::CVODEUserData::energy']]],
+  ['engine_3',['engine',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#af8c233f893bf740e81c5254d84534067',1,'gridfire::solver::CVODESolverStrategy::TimestepContext::engine'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ac44d6bd0f4952d8bfdf487a09264872b',1,'gridfire::solver::CVODESolverStrategy::CVODEUserData::engine']]],
+  ['evgrelation_4',['eVgRelation',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#af834029caff08f9d5f7ff3a817ade469',1,'gridfire::rates::weak::WeakReaction::constants']]]
 ];
diff --git a/docs/html/search/variables_7.js b/docs/html/search/variables_7.js
index 38f945d5..592280b5 100644
--- a/docs/html/search/variables_7.js
+++ b/docs/html/search/variables_7.js
@@ -9,7 +9,8 @@ var searchData=
   ['img24_6',['img24',['../structgridfire_1_1approx8_1_1_approx8_net.html#a9647205f52fb0fa21316be39c3a6d709',1,'gridfire::approx8::Approx8Net']]],
   ['in14_7',['in14',['../structgridfire_1_1approx8_1_1_approx8_net.html#a1af9135867aa3786721b89dbfdc4aee0',1,'gridfire::approx8::Approx8Net']]],
   ['ine20_8',['ine20',['../structgridfire_1_1approx8_1_1_approx8_net.html#ad43418fd8c536ebc814d5e6de555256c',1,'gridfire::approx8::Approx8Net']]],
-  ['io16_9',['io16',['../structgridfire_1_1approx8_1_1_approx8_net.html#ab4e95622dc0414ad7e636ef811e600af',1,'gridfire::approx8::Approx8Net']]],
-  ['is_5fin_5fequilibrium_10',['is_in_equilibrium',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
-  ['itemp_11',['iTemp',['../structgridfire_1_1approx8_1_1_approx8_net.html#a010df59d40b3bc8a802224968922ebde',1,'gridfire::approx8::Approx8Net']]]
+  ['interpolationerrortypemap_9',['InterpolationErrorTypeMap',['../namespacegridfire_1_1rates_1_1weak.html#a7a262a98e1956c33645bad4eb4e40c7a',1,'gridfire::rates::weak']]],
+  ['io16_10',['io16',['../structgridfire_1_1approx8_1_1_approx8_net.html#ab4e95622dc0414ad7e636ef811e600af',1,'gridfire::approx8::Approx8Net']]],
+  ['is_5fin_5fequilibrium_11',['is_in_equilibrium',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+  ['itemp_12',['iTemp',['../structgridfire_1_1approx8_1_1_approx8_net.html#a010df59d40b3bc8a802224968922ebde',1,'gridfire::approx8::Approx8Net']]]
 ];
diff --git a/docs/html/search/variables_9.js b/docs/html/search/variables_9.js
index 449c0369..7be0cc23 100644
--- a/docs/html/search/variables_9.js
+++ b/docs/html/search/variables_9.js
@@ -1,7 +1,16 @@
 var searchData=
 [
   ['label_0',['label',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a2165deb1c0a54a5086b496cf34604fa5',1,'gridfire::reaclib::ReactionRecord']]],
-  ['last_5fobserved_5ftime_1',['last_observed_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a3e4d242a2f5f6726b980119ed80a9901',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['last_5fstep_5ftime_2',['last_step_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a349187ed1b13c91ef6f9d930db58d97b',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['lowerindex_3',['lowerIndex',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a2da59e4f6e2ba3eff581bacabbf387de',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]]
+  ['last_5fstep_5ftime_1',['last_step_time',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a92187c15b7bcb90adebecc87e1436a',1,'gridfire::solver::CVODESolverStrategy::TimestepContext']]],
+  ['log_5fantineutrino_5floss_5fbd_2',['log_antineutrino_loss_bd',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a9d4db2970fc7f525824f6666198b3d56',1,'gridfire::rates::weak::RateDataRow::log_antineutrino_loss_bd'],['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9134b85837be88ece72c20df9edce50d',1,'gridfire::rates::weak::WeakRatePayload::log_antineutrino_loss_bd']]],
+  ['log_5fbeta_5fminus_3',['log_beta_minus',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ab41dace2493e036460736d8124a3475c',1,'gridfire::rates::weak::RateDataRow::log_beta_minus'],['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aa2e81d295afba465427e46b36e1438e4',1,'gridfire::rates::weak::WeakRatePayload::log_beta_minus']]],
+  ['log_5fbeta_5fplus_4',['log_beta_plus',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a359555f2b05e4b30bf810e12456df43b',1,'gridfire::rates::weak::RateDataRow::log_beta_plus'],['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9d71d093fbb35cd8a451ea12cde28771',1,'gridfire::rates::weak::WeakRatePayload::log_beta_plus']]],
+  ['log_5felectron_5fcapture_5',['log_electron_capture',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a075a70baa4ac5859fb01d493e08debdd',1,'gridfire::rates::weak::RateDataRow::log_electron_capture'],['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aeb0494f46a0c6b9e29ed4cc15f07364b',1,'gridfire::rates::weak::WeakRatePayload::log_electron_capture']]],
+  ['log_5fneutrino_5floss_6',['log_neutrino_loss',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#aa603395b65c8639f8d93f73b7d9bd61e',1,'gridfire::rates::weak::WeakReactionEntry']]],
+  ['log_5fneutrino_5floss_5fec_7',['log_neutrino_loss_ec',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#abd2d7fc00f582316eae824ccafef9b4b',1,'gridfire::rates::weak::RateDataRow::log_neutrino_loss_ec'],['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a6bbeb82cc27fd59ceafa320c1515106a',1,'gridfire::rates::weak::WeakRatePayload::log_neutrino_loss_ec']]],
+  ['log_5fpositron_5fcapture_8',['log_positron_capture',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#afc3f5d3e5c3ec52134619fd462922f85',1,'gridfire::rates::weak::RateDataRow::log_positron_capture'],['../structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#abe1b2dd11ec550311a58555f3a945cbe',1,'gridfire::rates::weak::WeakRatePayload::log_positron_capture']]],
+  ['log_5frate_9',['log_rate',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a90b6e47918fa750c28917ba6136c7880',1,'gridfire::rates::weak::WeakReactionEntry']]],
+  ['log_5frhoye_10',['log_rhoYe',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a17dde21438cabec9ae23a0d318c41a7a',1,'gridfire::rates::weak::WeakReactionEntry']]],
+  ['log_5frhoye_11',['log_rhoye',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ad7908a8b8a1db5014f23a7b3855156b0',1,'gridfire::rates::weak::RateDataRow']]],
+  ['lowerindex_12',['lowerIndex',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a2da59e4f6e2ba3eff581bacabbf387de',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]]
 ];
diff --git a/docs/html/search/variables_a.js b/docs/html/search/variables_a.js
index 408b18fd..ed942cd1 100644
--- a/docs/html/search/variables_a.js
+++ b/docs/html/search/variables_a.js
@@ -1,98 +1,139 @@
 var searchData=
 [
-  ['m_5factivereactionindices_0',['m_activeReactionIndices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5factivereactions_1',['m_activeReactions',['../classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800',1,'gridfire::AdaptiveEngineView::m_activeReactions'],['../classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965',1,'gridfire::DefinedEngineView::m_activeReactions']]],
-  ['m_5factivespecies_2',['m_activeSpecies',['../classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940',1,'gridfire::AdaptiveEngineView::m_activeSpecies'],['../classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae',1,'gridfire::DefinedEngineView::m_activeSpecies']]],
-  ['m_5factivespeciesindices_3',['m_activeSpeciesIndices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5falgebraic_5fspecies_4',['m_algebraic_species',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5falgebraic_5fspecies_5findices_5',['m_algebraic_species_indices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a53862719dd73f98bc69eecde090cf655',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5fatomicreverserates_6',['m_atomicReverseRates',['../classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6',1,'gridfire::GraphEngine']]],
-  ['m_5fbaseengine_7',['m_baseEngine',['../classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8',1,'gridfire::AdaptiveEngineView::m_baseEngine'],['../classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195',1,'gridfire::DefinedEngineView::m_baseEngine'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93',1,'gridfire::MultiscalePartitioningEngineView::m_baseEngine']]],
-  ['m_5fcacheconfig_8',['m_cacheConfig',['../structgridfire_1_1_q_s_e_cache_key.html#a711acccecadd93495fd08c81838be2d8',1,'gridfire::QSECacheKey']]],
-  ['m_5fcached_5fresult_9',['m_cached_result',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
-  ['m_5fcached_5ftime_10',['m_cached_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a17b83f2478395c934c4ec2c964e9d35e',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
-  ['m_5fcachestats_11',['m_cacheStats',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5fcallback_12',['m_callback',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a70d801db98fe8e2e4e6010f37da29905',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_callback'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a44fbc45faa9e4b6864ac6b81282941b5',1,'gridfire::solver::DirectNetworkSolver::m_callback']]],
-  ['m_5fchapter_13',['m_chapter',['../classgridfire_1_1reaction_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b',1,'gridfire::reaction::Reaction::m_chapter'],['../classgridfire_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b',1,'gridfire::Reaction::m_chapter']]],
-  ['m_5fconfig_14',['m_config',['../classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18',1,'gridfire::GraphEngine::m_config'],['../classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30',1,'gridfire::AdaptiveEngineView::m_config'],['../classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362',1,'gridfire::FileDefinedEngineView::m_config'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874',1,'gridfire::io::SimpleReactionListFileParser::m_config'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d',1,'gridfire::io::MESANetworkFileParser::m_config'],['../classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09',1,'gridfire::Network::m_config'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a2cc12e737a753a42b72a45be3fbfa8ab',1,'gridfire::solver::DirectNetworkSolver::m_config']]],
-  ['m_5fconstants_15',['m_constants',['../classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e',1,'gridfire::GraphEngine::m_constants'],['../classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410',1,'gridfire::Network::m_constants']]],
-  ['m_5fdepth_16',['m_depth',['../classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01',1,'gridfire::GraphEngine']]],
-  ['m_5fdt0_17',['m_dt0',['../classgridfire_1_1approx8_1_1_approx8_network.html#a6ed8022834e9541b3e547dd867648b0f',1,'gridfire::approx8::Approx8Network']]],
-  ['m_5fdynamic_5fspecies_18',['m_dynamic_species',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5fdynamic_5fspecies_5findices_19',['m_dynamic_species_indices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a38b4f0373c3bd81503889650c0bb69bb',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5fengine_20',['m_engine',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d',1,'gridfire::GraphEngine::AtomicReverseRate::m_engine'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8',1,'gridfire::solver::NetworkSolverStrategy::m_engine'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a035962dfdfc13d255def98befefcccd9',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_engine'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_engine']]],
-  ['m_5feps_5fnuc_21',['m_eps_nuc',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a24207163a7ea2dde675b458f9df37a99',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
-  ['m_5ffilename_22',['m_fileName',['../classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b',1,'gridfire::FileDefinedEngineView']]],
-  ['m_5ffilename_23',['m_filename',['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099',1,'gridfire::io::MESANetworkFileParser']]],
-  ['m_5fformat_24',['m_format',['../classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18',1,'gridfire::Network']]],
-  ['m_5ffull_5fjacobian_5fsparsity_5fpattern_25',['m_full_jacobian_sparsity_pattern',['../classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06',1,'gridfire::GraphEngine']]],
-  ['m_5fground_5fstate_5fspin_26',['m_ground_state_spin',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245',1,'gridfire::partition::GroundStatePartitionFunction']]],
-  ['m_5fhash_27',['m_hash',['../structgridfire_1_1_q_s_e_cache_key.html#ab860b40d4ccb3c16a962d96bc767ff05',1,'gridfire::QSECacheKey']]],
-  ['m_5fhit_28',['m_hit',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a0c3bd8d5918e344657227a09cd7e39a5',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['m_5fid_29',['m_id',['../classgridfire_1_1reaction_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b',1,'gridfire::reaction::Reaction::m_id'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5fda3af5ea9ae0ecfb60a61a9e07f5b4',1,'gridfire::reaction::TemplatedReactionSet::m_id'],['../classgridfire_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b',1,'gridfire::Reaction::m_id']]],
-  ['m_5findex_30',['m_index',['../structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e',1,'gridfire::expectations::EngineIndexError']]],
-  ['m_5fisstale_31',['m_isStale',['../classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e',1,'gridfire::AdaptiveEngineView::m_isStale'],['../classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382',1,'gridfire::DefinedEngineView::m_isStale']]],
-  ['m_5fjac_5fwork_32',['m_jac_work',['../classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891',1,'gridfire::GraphEngine']]],
-  ['m_5fjacobianmatrix_33',['m_jacobianMatrix',['../classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910',1,'gridfire::GraphEngine']]],
-  ['m_5flast_5fobserved_5ftime_34',['m_last_observed_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a49268e65b89444c3caf1e69323ce545b',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
-  ['m_5flast_5fstep_5ftime_35',['m_last_step_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a69d773a1cfe4804876dbf23de1f212c9',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
-  ['m_5flogger_36',['m_logger',['../classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53',1,'gridfire::GraphEngine::m_logger'],['../classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193',1,'gridfire::AdaptiveEngineView::m_logger'],['../classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3',1,'gridfire::DefinedEngineView::m_logger'],['../classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432',1,'gridfire::FileDefinedEngineView::m_logger'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a',1,'gridfire::MultiscalePartitioningEngineView::m_logger'],['../classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d',1,'gridfire::NetworkPrimingEngineView::m_logger'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66',1,'gridfire::io::SimpleReactionListFileParser::m_logger'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937',1,'gridfire::io::MESANetworkFileParser::m_logger'],['../classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5',1,'gridfire::Network::m_logger'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b',1,'gridfire::partition::CompositePartitionFunction::m_logger'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b',1,'gridfire::partition::GroundStatePartitionFunction::m_logger'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6',1,'gridfire::partition::RauscherThielemannPartitionFunction::m_logger'],['../classgridfire_1_1reaction_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4',1,'gridfire::reaction::Reaction::m_logger'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac6fcc5b08938b73ff6dac680e5bf28d9',1,'gridfire::reaction::TemplatedReactionSet::m_logger'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f',1,'gridfire::screening::WeakScreeningModel::m_logger'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a6cc605a83b5ac5ae048d1044be284ada',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_logger'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079',1,'gridfire::solver::DirectNetworkSolver::m_logger'],['../classgridfire_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4',1,'gridfire::Reaction::m_logger']]],
-  ['m_5flogmanager_37',['m_logManager',['../classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16',1,'gridfire::Network']]],
-  ['m_5fmessage_38',['m_message',['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb',1,'gridfire::exceptions::StaleEngineError::m_message'],['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a77c9a660a2748c2e3a1c7e94edad1cf0',1,'gridfire::exceptions::FailedToPartitionEngineError::m_message'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a581527fc03fdd84a8309c147259ec09d',1,'gridfire::exceptions::NetworkResizedError::m_message'],['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047',1,'gridfire::exceptions::UnableToSetNetworkReactionsError::m_message'],['../structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc',1,'gridfire::expectations::EngineError::m_message']]],
-  ['m_5fmiss_39',['m_miss',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a73ca615753553f4a85160bd9f166da5b',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['m_5fnetworkspecies_40',['m_networkSpecies',['../classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc',1,'gridfire::GraphEngine::m_networkSpecies'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a0eed45bfe5296e4ca9f87b5b53841931',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_networkSpecies']]],
-  ['m_5fnetworkspeciesmap_41',['m_networkSpeciesMap',['../classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827',1,'gridfire::GraphEngine']]],
-  ['m_5fnum_5fsteps_42',['m_num_steps',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
-  ['m_5foperatorhits_43',['m_operatorHits',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac18229250c4c160aada96e19325faa29',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['m_5foperatormisses_44',['m_operatorMisses',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
-  ['m_5fparser_45',['m_parser',['../classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500',1,'gridfire::FileDefinedEngineView']]],
-  ['m_5fpartitiondata_46',['m_partitionData',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a50ce19df4c12e22bbcb61422248a4038',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
-  ['m_5fpartitionfunction_47',['m_partitionFunction',['../classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e',1,'gridfire::GraphEngine']]],
-  ['m_5fpartitionfunctions_48',['m_partitionFunctions',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8',1,'gridfire::partition::CompositePartitionFunction']]],
-  ['m_5fpename_49',['m_peName',['../classgridfire_1_1reaction_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248',1,'gridfire::reaction::Reaction::m_peName'],['../classgridfire_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248',1,'gridfire::Reaction::m_peName']]],
-  ['m_5fprecomputedreactions_50',['m_precomputedReactions',['../classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3',1,'gridfire::GraphEngine']]],
-  ['m_5fprimingspecies_51',['m_primingSpecies',['../classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5',1,'gridfire::NetworkPrimingEngineView']]],
-  ['m_5fproducts_52',['m_products',['../classgridfire_1_1reaction_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e',1,'gridfire::reaction::Reaction::m_products'],['../classgridfire_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e',1,'gridfire::Reaction::m_products']]],
-  ['m_5fqse_5fabundance_5fcache_53',['m_qse_abundance_cache',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5fqse_5fgroups_54',['m_qse_groups',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6',1,'gridfire::MultiscalePartitioningEngineView']]],
-  ['m_5fqse_5fsolve_5findices_55',['m_qse_solve_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4eb11e99dc2a7e038d815bf7c6bd0be8',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
-  ['m_5fqvalue_56',['m_qValue',['../classgridfire_1_1reaction_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b',1,'gridfire::reaction::Reaction::m_qValue'],['../classgridfire_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b',1,'gridfire::Reaction::m_qValue']]],
-  ['m_5fratecoefficients_57',['m_rateCoefficients',['../classgridfire_1_1reaction_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72',1,'gridfire::reaction::Reaction::m_rateCoefficients'],['../classgridfire_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72',1,'gridfire::Reaction::m_rateCoefficients']]],
-  ['m_5frates_58',['m_rates',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a81f75f0085f8a5a45169f0b7240c809d',1,'gridfire::reaction::LogicalReaction']]],
-  ['m_5freactants_59',['m_reactants',['../classgridfire_1_1reaction_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11',1,'gridfire::reaction::Reaction::m_reactants'],['../classgridfire_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11',1,'gridfire::Reaction::m_reactants']]],
-  ['m_5freaction_60',['m_reaction',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a98ed8b450f7868f55e8362a848a4710d',1,'gridfire::GraphEngine::AtomicReverseRate']]],
-  ['m_5freactionidmap_61',['m_reactionIDMap',['../classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3',1,'gridfire::GraphEngine']]],
-  ['m_5freactionindexmap_62',['m_reactionIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de',1,'gridfire::AdaptiveEngineView::m_reactionIndexMap'],['../classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd',1,'gridfire::DefinedEngineView::m_reactionIndexMap']]],
-  ['m_5freactionnamemap_63',['m_reactionNameMap',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a3a4c2448865580001fd3c797b9f56979',1,'gridfire::reaction::TemplatedReactionSet']]],
-  ['m_5freactions_64',['m_reactions',['../classgridfire_1_1_graph_engine.html#acb7c4f5108b0efeae48ad15598e808c3',1,'gridfire::GraphEngine::m_reactions'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5962968fe478c79250e9d88d80a87600',1,'gridfire::reaction::TemplatedReactionSet::m_reactions']]],
-  ['m_5freverse_65',['m_reverse',['../classgridfire_1_1reaction_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9',1,'gridfire::reaction::Reaction::m_reverse'],['../classgridfire_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9',1,'gridfire::Reaction::m_reverse']]],
-  ['m_5frho_66',['m_rho',['../structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63',1,'gridfire::QSECacheKey::m_rho'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::m_rho'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44',1,'gridfire::exceptions::StaleEngineTrigger::state::m_rho'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_rho'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_rho']]],
-  ['m_5frhsadfun_67',['m_rhsADFun',['../classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876',1,'gridfire::GraphEngine']]],
-  ['m_5fscreeningmodel_68',['m_screeningModel',['../classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210',1,'gridfire::GraphEngine']]],
-  ['m_5fscreeningtype_69',['m_screeningType',['../classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80',1,'gridfire::GraphEngine']]],
-  ['m_5fsourcelabel_70',['m_sourceLabel',['../classgridfire_1_1reaction_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6',1,'gridfire::reaction::Reaction::m_sourceLabel'],['../classgridfire_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6',1,'gridfire::Reaction::m_sourceLabel']]],
-  ['m_5fsources_71',['m_sources',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a7fe91d24e20ebc76d612f6ad742f476f',1,'gridfire::reaction::LogicalReaction']]],
-  ['m_5fspecies_5fcache_72',['m_species_cache',['../class_py_engine.html#a73caaa7606e2cdfd1aa82729a78ebb73',1,'PyEngine::m_species_cache'],['../class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03',1,'PyDynamicEngine::m_species_cache']]],
-  ['m_5fspeciesindexmap_73',['m_speciesIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093',1,'gridfire::AdaptiveEngineView::m_speciesIndexMap'],['../classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e',1,'gridfire::DefinedEngineView::m_speciesIndexMap']]],
-  ['m_5fspeciestoindexmap_74',['m_speciesToIndexMap',['../classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7',1,'gridfire::GraphEngine']]],
-  ['m_5fstate_75',['m_state',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a7f9fa2e34da3772714723ef7d5083be5',1,'gridfire::exceptions::StaleEngineTrigger']]],
-  ['m_5fstiff_76',['m_stiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#a697cb49bebc8d0659eb791500c451c67',1,'gridfire::approx8::Approx8Network::m_stiff'],['../classgridfire_1_1_network.html#aefe364ae5af783e19e7b93bfd475566e',1,'gridfire::Network::m_stiff']]],
-  ['m_5fstoichiometrymatrix_77',['m_stoichiometryMatrix',['../classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24',1,'gridfire::GraphEngine']]],
-  ['m_5ft_78',['m_t',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a352cd33629e63286808df617d36cb70b',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
-  ['m_5ft9_79',['m_T9',['../structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7',1,'gridfire::QSECacheKey::m_T9'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::m_T9'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963',1,'gridfire::exceptions::StaleEngineTrigger::state::m_T9'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_T9'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_T9']]],
-  ['m_5ftmax_80',['m_tMax',['../classgridfire_1_1approx8_1_1_approx8_network.html#a6fadf388f07c160f1887a3cb72eaa869',1,'gridfire::approx8::Approx8Network']]],
-  ['m_5ftotal_5fsteps_81',['m_total_steps',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#ac1cddf0f2955d4282afcf4a90a2de9c0',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
-  ['m_5fuseprecomputation_82',['m_usePrecomputation',['../classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de',1,'gridfire::GraphEngine']]],
-  ['m_5fusereversereactions_83',['m_useReverseReactions',['../classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc',1,'gridfire::GraphEngine']]],
-  ['m_5fview_84',['m_view',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
-  ['m_5fy_85',['m_Y',['../structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a',1,'gridfire::QSECacheKey::m_Y'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf',1,'gridfire::exceptions::StaleEngineTrigger::state::m_Y']]],
-  ['m_5fy_86',['m_y',['../classgridfire_1_1approx8_1_1_approx8_network.html#abf9f13ff532917ddac4a7d987698836d',1,'gridfire::approx8::Approx8Network']]],
-  ['m_5fy_5ffull_5finitial_87',['m_Y_full_initial',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3bc901d2d8234d1f61e94d0fe0777f7d',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
-  ['m_5fy_5fscale_88',['m_Y_scale',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
-  ['massfractionchanges_89',['massFractionChanges',['../structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7',1,'gridfire::PrimingReport']]],
-  ['mean_5ftimescale_90',['mean_timescale',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
-  ['min_5fabundance_5fthreshold_91',['MIN_ABUNDANCE_THRESHOLD',['../namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06',1,'gridfire']]],
-  ['min_5fdensity_5fthreshold_92',['MIN_DENSITY_THRESHOLD',['../namespacegridfire.html#ada3c137c014ecd8d06200fea2d1a9f50',1,'gridfire']]],
-  ['min_5fjacobian_5fthreshold_93',['MIN_JACOBIAN_THRESHOLD',['../namespacegridfire.html#ae01b1738df1921db565bcbd68dd6cf64',1,'gridfire']]],
-  ['mion_94',['mIon',['../structgridfire_1_1approx8_1_1_approx8_net.html#a928b7810cb2993d59d40aa73c2faef18',1,'gridfire::approx8::Approx8Net']]]
+  ['m_5fa_0',['m_A',['../classgridfire_1_1trigger_1_1_and_trigger.html#a99be74b126d50c15d21c0724d933af87',1,'gridfire::trigger::AndTrigger::m_A'],['../classgridfire_1_1trigger_1_1_or_trigger.html#a6da04b5b15371f7087be03bb337dbdd6',1,'gridfire::trigger::OrTrigger::m_A'],['../classgridfire_1_1trigger_1_1_not_trigger.html#a0d7818e59a8d86e86053bcb6d5d7d2b8',1,'gridfire::trigger::NotTrigger::m_A'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a27f1fd8c8a93576f83a4f3320469c83a',1,'gridfire::trigger::EveryNthTrigger::m_A']]],
+  ['m_5fa_1',['m_a',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a0beb567afdecd85e336b493ff85326bd',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate']]],
+  ['m_5factivereactionindices_2',['m_activeReactionIndices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['m_5factivereactions_3',['m_activeReactions',['../classgridfire_1_1_adaptive_engine_view.html#ab5ab06941bf6d97007d0a76658bf2aa6',1,'gridfire::AdaptiveEngineView::m_activeReactions'],['../classgridfire_1_1_defined_engine_view.html#a824fe65ae22fa856051f2652764a0bb6',1,'gridfire::DefinedEngineView::m_activeReactions']]],
+  ['m_5factivespecies_4',['m_activeSpecies',['../classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940',1,'gridfire::AdaptiveEngineView::m_activeSpecies'],['../classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae',1,'gridfire::DefinedEngineView::m_activeSpecies']]],
+  ['m_5factivespeciesindices_5',['m_activeSpeciesIndices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['m_5falgebraic_5fabundances_6',['m_algebraic_abundances',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a3af2b37ce21829d9554d702cad074470',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['m_5falgebraic_5fspecies_7',['m_algebraic_species',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['m_5fatomic_8',['m_atomic',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a4f2bf61b35566e439ac8a48da265d215',1,'gridfire::rates::weak::WeakReaction']]],
+  ['m_5fatomicreverserates_9',['m_atomicReverseRates',['../classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6',1,'gridfire::GraphEngine']]],
+  ['m_5fb_10',['m_B',['../classgridfire_1_1trigger_1_1_and_trigger.html#af8ee88421d0dfd92de6df96d686ece38',1,'gridfire::trigger::AndTrigger::m_B'],['../classgridfire_1_1trigger_1_1_or_trigger.html#a30dec370b61a5f0562956394b89e8f89',1,'gridfire::trigger::OrTrigger::m_B']]],
+  ['m_5fbaseengine_11',['m_baseEngine',['../classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8',1,'gridfire::AdaptiveEngineView::m_baseEngine'],['../classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195',1,'gridfire::DefinedEngineView::m_baseEngine'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93',1,'gridfire::MultiscalePartitioningEngineView::m_baseEngine']]],
+  ['m_5fcacheconfig_12',['m_cacheConfig',['../structgridfire_1_1_q_s_e_cache_key.html#a711acccecadd93495fd08c81838be2d8',1,'gridfire::QSECacheKey']]],
+  ['m_5fcachestats_13',['m_cacheStats',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['m_5fcallback_14',['m_callback',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50c7b4e1ff2c88ce424c745478414e30',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5fchapter_15',['m_chapter',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#adbcb383bac0f47c66251ee1b7c5f539d',1,'gridfire::reaction::ReaclibReaction']]],
+  ['m_5fconfig_16',['m_config',['../classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18',1,'gridfire::GraphEngine::m_config'],['../classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30',1,'gridfire::AdaptiveEngineView::m_config'],['../classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362',1,'gridfire::FileDefinedEngineView::m_config'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874',1,'gridfire::io::SimpleReactionListFileParser::m_config'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d',1,'gridfire::io::MESANetworkFileParser::m_config'],['../classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09',1,'gridfire::Network::m_config'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a202fe9e6499aac5f6813e036ee4ed2d5',1,'gridfire::solver::CVODESolverStrategy::m_config']]],
+  ['m_5fconstants_17',['m_constants',['../classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e',1,'gridfire::GraphEngine::m_constants'],['../classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410',1,'gridfire::Network::m_constants'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2f0ee4c0d52db0f58781f90dd39dc0f7',1,'gridfire::rates::weak::WeakReaction::m_constants']]],
+  ['m_5fconstraints_18',['m_constraints',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50d8f309ca897fa83b16db0a1701b339',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5fcounter_19',['m_counter',['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a80d6f82095c3b5fdbc46776e183cdb1f',1,'gridfire::trigger::EveryNthTrigger']]],
+  ['m_5fcvode_5fmem_20',['m_cvode_mem',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab5a8fa55e36685cac50c1dbdd8dbfa57',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5fdata_21',['m_data',['../classgridfire_1_1utils_1_1_column.html#aaa99c4d00c3b79e37f2e73e7c6854758',1,'gridfire::utils::Column']]],
+  ['m_5fdepth_22',['m_depth',['../classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01',1,'gridfire::GraphEngine']]],
+  ['m_5fdt0_23',['m_dt0',['../classgridfire_1_1approx8_1_1_approx8_network.html#a6ed8022834e9541b3e547dd867648b0f',1,'gridfire::approx8::Approx8Network']]],
+  ['m_5fdynamic_5fspecies_24',['m_dynamic_species',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['m_5fengine_25',['m_engine',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d',1,'gridfire::GraphEngine::AtomicReverseRate::m_engine'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8',1,'gridfire::solver::NetworkSolverStrategy::m_engine']]],
+  ['m_5feps_5fnuc_26',['m_eps_nuc',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a24207163a7ea2dde675b458f9df37a99',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
+  ['m_5fepsadfun_27',['m_epsADFun',['../classgridfire_1_1_graph_engine.html#a1d5f6a3f217af7f4d0f95bdf7916b774',1,'gridfire::GraphEngine']]],
+  ['m_5ffilename_28',['m_fileName',['../classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b',1,'gridfire::FileDefinedEngineView']]],
+  ['m_5ffilename_29',['m_filename',['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099',1,'gridfire::io::MESANetworkFileParser']]],
+  ['m_5fformat_30',['m_format',['../classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18',1,'gridfire::Network']]],
+  ['m_5ffull_5fjacobian_5fsparsity_5fpattern_31',['m_full_jacobian_sparsity_pattern',['../classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06',1,'gridfire::GraphEngine']]],
+  ['m_5fground_5fstate_5fspin_32',['m_ground_state_spin',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245',1,'gridfire::partition::GroundStatePartitionFunction']]],
+  ['m_5fhash_33',['m_hash',['../structgridfire_1_1_q_s_e_cache_key.html#ab860b40d4ccb3c16a962d96bc767ff05',1,'gridfire::QSECacheKey']]],
+  ['m_5fheader_34',['m_header',['../classgridfire_1_1utils_1_1_column.html#aaddf58469be3e3fd3bee0f4f660fe9e0',1,'gridfire::utils::Column']]],
+  ['m_5fhit_35',['m_hit',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a0c3bd8d5918e344657227a09cd7e39a5',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['m_5fhits_36',['m_hits',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a2b1b4a9ef137e76d39e7a7dcb6cf725d',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_hits'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0d3b7c1d1057f442417c2f8c2a7177c5',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_hits'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aff23db33140aa6a5a2ad36eda77b833d',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_hits'],['../classgridfire_1_1trigger_1_1_and_trigger.html#a43e6a9c01b163ab92a0b413bfba52ef5',1,'gridfire::trigger::AndTrigger::m_hits'],['../classgridfire_1_1trigger_1_1_or_trigger.html#a35d519d5266c68b696b779b275574ebf',1,'gridfire::trigger::OrTrigger::m_hits'],['../classgridfire_1_1trigger_1_1_not_trigger.html#a86404f57e0e0683fc56e0e49321e5e3b',1,'gridfire::trigger::NotTrigger::m_hits'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a021c30d6db015bb88a70af348a5dd336',1,'gridfire::trigger::EveryNthTrigger::m_hits']]],
+  ['m_5fid_37',['m_id',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ca86e0f8f95ffb6d87ca295e44f14c5',1,'gridfire::reaction::ReaclibReaction::m_id'],['../classgridfire_1_1reaction_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111',1,'gridfire::reaction::ReactionSet::m_id'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a79877bd387bd891e602adff3f99cb4c5',1,'gridfire::rates::weak::WeakReaction::m_id'],['../classgridfire_1_1_reaction_set.html#af92e3003b2a3606b48ab857cdedc3111',1,'gridfire::ReactionSet::m_id']]],
+  ['m_5findex_38',['m_index',['../structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e',1,'gridfire::expectations::EngineIndexError']]],
+  ['m_5findextospeciesmap_39',['m_indexToSpeciesMap',['../classgridfire_1_1_graph_engine.html#a8ff064c9996772281984f88ee492d04a',1,'gridfire::GraphEngine']]],
+  ['m_5finitial_5fcomp_40',['m_initial_comp',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ac5bf1e4b4ac8435af5739ce970b373d7',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['m_5finterpolator_41',['m_interpolator',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a874efa5a57427c8afecd0375094da6e9',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::m_interpolator'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#adf203cbae7d7afcd274020b5210b426b',1,'gridfire::rates::weak::WeakReaction::m_interpolator']]],
+  ['m_5finterval_42',['m_interval',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab6215873390f6bedab5c9f83b990b5e0',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger']]],
+  ['m_5fisstale_43',['m_isStale',['../classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e',1,'gridfire::AdaptiveEngineView::m_isStale'],['../classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382',1,'gridfire::DefinedEngineView::m_isStale']]],
+  ['m_5fj_44',['m_J',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afd1053d0827512b6831ee15f14488c20',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5fjac_5fwork_45',['m_jac_work',['../classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891',1,'gridfire::GraphEngine']]],
+  ['m_5fjacobianmatrix_46',['m_jacobianMatrix',['../classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910',1,'gridfire::GraphEngine']]],
+  ['m_5flast_5ftrigger_5ftime_47',['m_last_trigger_time',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a51ac3899010c2790fc98801ffba9407e',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger']]],
+  ['m_5flast_5ftrigger_5ftime_5fdelta_48',['m_last_trigger_time_delta',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab93cb25bbebb159a8608a737bd972abd',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger']]],
+  ['m_5flogger_49',['m_logger',['../classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53',1,'gridfire::GraphEngine::m_logger'],['../classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193',1,'gridfire::AdaptiveEngineView::m_logger'],['../classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3',1,'gridfire::DefinedEngineView::m_logger'],['../classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432',1,'gridfire::FileDefinedEngineView::m_logger'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a',1,'gridfire::MultiscalePartitioningEngineView::m_logger'],['../classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d',1,'gridfire::NetworkPrimingEngineView::m_logger'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66',1,'gridfire::io::SimpleReactionListFileParser::m_logger'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937',1,'gridfire::io::MESANetworkFileParser::m_logger'],['../classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5',1,'gridfire::Network::m_logger'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b',1,'gridfire::partition::CompositePartitionFunction::m_logger'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b',1,'gridfire::partition::GroundStatePartitionFunction::m_logger'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6',1,'gridfire::partition::RauscherThielemannPartitionFunction::m_logger'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#abab0ed78925789856ebb119d60c6a53d',1,'gridfire::reaction::ReaclibReaction::m_logger'],['../classgridfire_1_1reaction_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb',1,'gridfire::reaction::ReactionSet::m_logger'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f',1,'gridfire::screening::WeakScreeningModel::m_logger'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5867eb99b00815b8b4f710cb48904dbe',1,'gridfire::solver::CVODESolverStrategy::m_logger'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a16e9b87a8abb05bb6b5410903eb49e91',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_logger'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#afbd9258d65370bbc965e799c82f0e1c0',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_logger'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#abe902b2a42a6451f64497e075b0e0b25',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_logger'],['../classgridfire_1_1_reaction_set.html#aff5ae284012009164d4b3033577709eb',1,'gridfire::ReactionSet::m_logger']]],
+  ['m_5flogmanager_50',['m_logManager',['../classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16',1,'gridfire::Network']]],
+  ['m_5fls_51',['m_LS',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af4a2f003a4c4c06b4b72840f2d445f81',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5fmessage_52',['m_message',['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb',1,'gridfire::exceptions::StaleEngineError::m_message'],['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a77c9a660a2748c2e3a1c7e94edad1cf0',1,'gridfire::exceptions::FailedToPartitionEngineError::m_message'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a581527fc03fdd84a8309c147259ec09d',1,'gridfire::exceptions::NetworkResizedError::m_message'],['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047',1,'gridfire::exceptions::UnableToSetNetworkReactionsError::m_message'],['../structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc',1,'gridfire::expectations::EngineError::m_message']]],
+  ['m_5fmiss_53',['m_miss',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a73ca615753553f4a85160bd9f166da5b',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['m_5fmisses_54',['m_misses',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a00ede9fff51a8318913fd2ed504c1007',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_misses'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a14b1884a9014df33a1ec90dd3433c0b9',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_misses'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a021c760717efef3fc3b415dee6d4840b',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_misses'],['../classgridfire_1_1trigger_1_1_and_trigger.html#a1714656e907edfcba2d354ff5d7c9ceb',1,'gridfire::trigger::AndTrigger::m_misses'],['../classgridfire_1_1trigger_1_1_or_trigger.html#ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b',1,'gridfire::trigger::OrTrigger::m_misses'],['../classgridfire_1_1trigger_1_1_not_trigger.html#aa1253080cd57cdf0be6780773ce6c73c',1,'gridfire::trigger::NotTrigger::m_misses'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0a5c2c5aedc779c1535d3839c6a6596e',1,'gridfire::trigger::EveryNthTrigger::m_misses']]],
+  ['m_5fn_55',['m_N',['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a652ba8d1ac36b9713f426eedf2b1ead0',1,'gridfire::trigger::EveryNthTrigger']]],
+  ['m_5fnetworkspecies_56',['m_networkSpecies',['../classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc',1,'gridfire::GraphEngine']]],
+  ['m_5fnetworkspeciesmap_57',['m_networkSpeciesMap',['../classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827',1,'gridfire::GraphEngine']]],
+  ['m_5fnum_5fsteps_58',['m_num_steps',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab7495898e893640670f49308a105658f',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5foperatorhits_59',['m_operatorHits',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac18229250c4c160aada96e19325faa29',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['m_5foperatormisses_60',['m_operatorMisses',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+  ['m_5fparser_61',['m_parser',['../classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500',1,'gridfire::FileDefinedEngineView']]],
+  ['m_5fpartitiondata_62',['m_partitionData',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a50ce19df4c12e22bbcb61422248a4038',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+  ['m_5fpartitionfunction_63',['m_partitionFunction',['../classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e',1,'gridfire::GraphEngine']]],
+  ['m_5fpartitionfunctions_64',['m_partitionFunctions',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8',1,'gridfire::partition::CompositePartitionFunction']]],
+  ['m_5fpename_65',['m_peName',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a51f658789f34f96e0e6bd42cef5cbfe4',1,'gridfire::reaction::ReaclibReaction']]],
+  ['m_5fprecomputedreactions_66',['m_precomputedReactions',['../classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3',1,'gridfire::GraphEngine']]],
+  ['m_5fprimingspecies_67',['m_primingSpecies',['../classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5',1,'gridfire::NetworkPrimingEngineView']]],
+  ['m_5fproduct_68',['m_product',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aee395d13ed3a515d5c1d69bedffca5de',1,'gridfire::rates::weak::WeakReaction']]],
+  ['m_5fproduct_5fa_69',['m_product_a',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2567545c89eb847a15909b02fa0f383e',1,'gridfire::rates::weak::WeakReaction']]],
+  ['m_5fproduct_5fz_70',['m_product_z',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ab1be1d3010ff539b8a911506734fd9cf',1,'gridfire::rates::weak::WeakReaction']]],
+  ['m_5fproducts_71',['m_products',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#ac350a26bdf19d7c1d20db55a226e6063',1,'gridfire::reaction::ReaclibReaction']]],
+  ['m_5fqse_5fabundance_5fcache_72',['m_qse_abundance_cache',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['m_5fqse_5fgroups_73',['m_qse_groups',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6',1,'gridfire::MultiscalePartitioningEngineView']]],
+  ['m_5fqse_5fsolve_5fspecies_74',['m_qse_solve_species',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4804c6481c2706b04f48c1bbfd9fd5f8',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['m_5fqse_5fsolve_5fspecies_5findex_5fmap_75',['m_qse_solve_species_index_map',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a23e6ba8dfe37b7f167837296a6654684',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['m_5fqvalue_76',['m_qValue',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a498c202a259cbc315997ec68a2cb8a59',1,'gridfire::reaction::ReaclibReaction']]],
+  ['m_5frate_5ftable_77',['m_rate_table',['../classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a7a01f956eccd3a0a90dd08984ca3f009',1,'gridfire::rates::weak::WeakRateInterpolator']]],
+  ['m_5fratecoefficients_78',['m_rateCoefficients',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a8ea3de0412395b7b617c4b71cbc2ab68',1,'gridfire::reaction::ReaclibReaction']]],
+  ['m_5frates_79',['m_rates',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#afe1b95bf9d81f7521b9f19bbd1305d01',1,'gridfire::reaction::LogicalReaclibReaction']]],
+  ['m_5freactant_80',['m_reactant',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aeaceef054714e2a9667986406107ba3a',1,'gridfire::rates::weak::WeakReaction']]],
+  ['m_5freactant_5fa_81',['m_reactant_a',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a37dfb1d460e78e81a6def62e7217e6f8',1,'gridfire::rates::weak::WeakReaction']]],
+  ['m_5freactant_5fz_82',['m_reactant_z',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a3d1b52076e102d07acb7200a7ee99165',1,'gridfire::rates::weak::WeakReaction']]],
+  ['m_5freactants_83',['m_reactants',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7cf403bc519ce39a1af886432a653826',1,'gridfire::reaction::ReaclibReaction']]],
+  ['m_5freaction_84',['m_reaction',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a98ed8b450f7868f55e8362a848a4710d',1,'gridfire::GraphEngine::AtomicReverseRate']]],
+  ['m_5freactionidmap_85',['m_reactionIDMap',['../classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3',1,'gridfire::GraphEngine']]],
+  ['m_5freactionindexmap_86',['m_reactionIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de',1,'gridfire::AdaptiveEngineView::m_reactionIndexMap'],['../classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd',1,'gridfire::DefinedEngineView::m_reactionIndexMap']]],
+  ['m_5freactionnamemap_87',['m_reactionNameMap',['../classgridfire_1_1reaction_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44',1,'gridfire::reaction::ReactionSet::m_reactionNameMap'],['../classgridfire_1_1_reaction_set.html#a62965c04447909462bb4f2112661ef44',1,'gridfire::ReactionSet::m_reactionNameMap']]],
+  ['m_5freactions_88',['m_reactions',['../classgridfire_1_1_graph_engine.html#ad3b97595871d1f62ee7f4726b601ebef',1,'gridfire::GraphEngine::m_reactions'],['../classgridfire_1_1reaction_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe',1,'gridfire::reaction::ReactionSet::m_reactions'],['../classgridfire_1_1_reaction_set.html#abd6feda1b3f65a6177904755581f6efe',1,'gridfire::ReactionSet::m_reactions']]],
+  ['m_5frelative_89',['m_relative',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa4162916f562b4d7ea0205d6f3e6f917',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger']]],
+  ['m_5fresets_90',['m_resets',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a3004a10bb89ecd7b2ba6103c9f5d4b96',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_resets'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#acd55d04da377c8bf4af3ea2fcf2f1918',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_resets'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad4cc7113574f71905bc93cc40024b4bd',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_resets'],['../classgridfire_1_1trigger_1_1_and_trigger.html#ae3ff88ddb15d04e798fc03c6c941e312',1,'gridfire::trigger::AndTrigger::m_resets'],['../classgridfire_1_1trigger_1_1_or_trigger.html#adc6f560d9199455ba98d85eadfe02847',1,'gridfire::trigger::OrTrigger::m_resets'],['../classgridfire_1_1trigger_1_1_not_trigger.html#adb9c36fa46a30c28e68c59a7d3bd825d',1,'gridfire::trigger::NotTrigger::m_resets'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a87b6e54f3a0536d20709d7e746ec575d',1,'gridfire::trigger::EveryNthTrigger::m_resets']]],
+  ['m_5freverse_91',['m_reverse',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#af52b42d940f6a09dba5d28898d2b0b1f',1,'gridfire::reaction::ReaclibReaction']]],
+  ['m_5frho_92',['m_rho',['../structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63',1,'gridfire::QSECacheKey::m_rho'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::m_rho'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44',1,'gridfire::exceptions::StaleEngineTrigger::state::m_rho']]],
+  ['m_5frhsadfun_93',['m_rhsADFun',['../classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876',1,'gridfire::GraphEngine']]],
+  ['m_5fscreeningmodel_94',['m_screeningModel',['../classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210',1,'gridfire::GraphEngine']]],
+  ['m_5fscreeningtype_95',['m_screeningType',['../classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80',1,'gridfire::GraphEngine']]],
+  ['m_5fsourcelabel_96',['m_sourceLabel',['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a7e79437a68947e176b8dd7dcbe27baab',1,'gridfire::reaction::ReaclibReaction']]],
+  ['m_5fsources_97',['m_sources',['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a8c6f12a01c6d1fdeba1f0cc73128731e',1,'gridfire::reaction::LogicalReaclibReaction']]],
+  ['m_5fspecies_5fcache_98',['m_species_cache',['../class_py_engine.html#a73caaa7606e2cdfd1aa82729a78ebb73',1,'PyEngine::m_species_cache'],['../class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03',1,'PyDynamicEngine::m_species_cache']]],
+  ['m_5fspeciesindexmap_99',['m_speciesIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093',1,'gridfire::AdaptiveEngineView::m_speciesIndexMap'],['../classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e',1,'gridfire::DefinedEngineView::m_speciesIndexMap']]],
+  ['m_5fspeciestoindexmap_100',['m_speciesToIndexMap',['../classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7',1,'gridfire::GraphEngine']]],
+  ['m_5fstate_101',['m_state',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a7f9fa2e34da3772714723ef7d5083be5',1,'gridfire::exceptions::StaleEngineTrigger']]],
+  ['m_5fstdout_5flogging_5fenabled_102',['m_stdout_logging_enabled',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af3e470b5a6f982c107785c64b169a992',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5fstiff_103',['m_stiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#a697cb49bebc8d0659eb791500c451c67',1,'gridfire::approx8::Approx8Network::m_stiff'],['../classgridfire_1_1_network.html#aefe364ae5af783e19e7b93bfd475566e',1,'gridfire::Network::m_stiff']]],
+  ['m_5fstoichiometrymatrix_104',['m_stoichiometryMatrix',['../classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24',1,'gridfire::GraphEngine']]],
+  ['m_5fsun_5fctx_105',['m_sun_ctx',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ac57a4f62d95d769c379470e680e6882d',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5ft_106',['m_t',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a352cd33629e63286808df617d36cb70b',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
+  ['m_5ft9_107',['m_T9',['../structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7',1,'gridfire::QSECacheKey::m_T9'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::m_T9'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963',1,'gridfire::exceptions::StaleEngineTrigger::state::m_T9']]],
+  ['m_5fthreshold_108',['m_threshold',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#aeac341c1e854d561a29aa39ad306d5d7',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_threshold'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ab7d86e5c89a848cf238141393fe3a8de',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_threshold']]],
+  ['m_5ftimestep_5fwindow_109',['m_timestep_window',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ae18e08a0bd72b68605d64e4d84355f79',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger']]],
+  ['m_5ftmax_110',['m_tMax',['../classgridfire_1_1approx8_1_1_approx8_network.html#a6fadf388f07c160f1887a3cb72eaa869',1,'gridfire::approx8::Approx8Network']]],
+  ['m_5ftotal_5fsteps_111',['m_total_steps',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#ac1cddf0f2955d4282afcf4a90a2de9c0',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
+  ['m_5ftype_112',['m_type',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae78d2a9b20c22a6ad624f4d968cbf639',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::m_type'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a92c3590161c63c6ed4e7650d2b7beee3',1,'gridfire::rates::weak::WeakReaction::m_type']]],
+  ['m_5fupdates_113',['m_updates',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#ab80799eb7c80b3b20c1a7e7f9e1f5030',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_updates'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a4885bdcc719a0f8c8394905893739b96',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_updates'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a25f6ac369c590a8370270bdc70545171',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_updates'],['../classgridfire_1_1trigger_1_1_and_trigger.html#a7f88c1139e1b05baed44614104d601b4',1,'gridfire::trigger::AndTrigger::m_updates'],['../classgridfire_1_1trigger_1_1_or_trigger.html#af595a5daab0f5b3ffc450c6de6737517',1,'gridfire::trigger::OrTrigger::m_updates'],['../classgridfire_1_1trigger_1_1_not_trigger.html#ae4830ed152643770b0888b040475b000',1,'gridfire::trigger::NotTrigger::m_updates'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#ab0a33f49be02d34b27f75edf75dbc06d',1,'gridfire::trigger::EveryNthTrigger::m_updates']]],
+  ['m_5fuseprecomputation_114',['m_usePrecomputation',['../classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de',1,'gridfire::GraphEngine']]],
+  ['m_5fusereversereactions_115',['m_useReverseReactions',['../classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc',1,'gridfire::GraphEngine']]],
+  ['m_5fview_116',['m_view',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['m_5fweak_5fnetwork_117',['m_weak_network',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#a8169adef9b4b3c7552c7a8fdc945cf6f',1,'gridfire::rates::weak::WeakReactionMap']]],
+  ['m_5fweakrateinterpolator_118',['m_weakRateInterpolator',['../classgridfire_1_1_graph_engine.html#a9ac5893030802b0b846552949e866340',1,'gridfire::GraphEngine']]],
+  ['m_5fwindowsize_119',['m_windowSize',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aa03c13813065f720cf698c240f07d559',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger']]],
+  ['m_5fy_120',['m_Y',['../structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a',1,'gridfire::QSECacheKey::m_Y'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf',1,'gridfire::exceptions::StaleEngineTrigger::state::m_Y'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aae19c1ec467051404a7bf1d4c7066c22',1,'gridfire::solver::CVODESolverStrategy::m_Y']]],
+  ['m_5fy_121',['m_y',['../classgridfire_1_1approx8_1_1_approx8_network.html#abf9f13ff532917ddac4a7d987698836d',1,'gridfire::approx8::Approx8Network']]],
+  ['m_5fy_5fscale_122',['m_Y_scale',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+  ['m_5fyerr_123',['m_YErr',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a0717afcde6fdb71b12490bbcadb5fdb4',1,'gridfire::solver::CVODESolverStrategy']]],
+  ['m_5fz_124',['m_z',['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a292dfe5fdfd3b90a36906f5f609a4c1c',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate']]],
+  ['massfractionchanges_125',['massFractionChanges',['../structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7',1,'gridfire::PrimingReport']]],
+  ['mean_5ftimescale_126',['mean_timescale',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+  ['mev2erg_127',['MeV2Erg',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ae527298ffcdeb0b7b4089eeed4ddb58d',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['mevgrelation_128',['MeVgRelation',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab60f42677de82f3aab77d2af846c2ffd',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['mevpergraph_129',['MeVPerGraph',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a57273916131b68d1aed6e16d85667427',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['min_5fabundance_5fthreshold_130',['MIN_ABUNDANCE_THRESHOLD',['../namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06',1,'gridfire']]],
+  ['min_5fdensity_5fthreshold_131',['MIN_DENSITY_THRESHOLD',['../namespacegridfire.html#ada3c137c014ecd8d06200fea2d1a9f50',1,'gridfire']]],
+  ['min_5fjacobian_5fthreshold_132',['MIN_JACOBIAN_THRESHOLD',['../namespacegridfire.html#ae01b1738df1921db565bcbd68dd6cf64',1,'gridfire']]],
+  ['mion_133',['mIon',['../structgridfire_1_1approx8_1_1_approx8_net.html#a928b7810cb2993d59d40aa73c2faef18',1,'gridfire::approx8::Approx8Net']]],
+  ['mu_5fe_134',['mu_e',['../structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ac08d42071950006ccf3c438253ef9ee9',1,'gridfire::rates::weak::RateDataRow::mu_e'],['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a4a1cbc93d5e197a69a5a29a8cabc6498',1,'gridfire::rates::weak::WeakReactionEntry::mu_e']]],
+  ['mue_5faxis_135',['mue_axis',['../structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a82cc218ce48dcb835d07422dad927a5a',1,'gridfire::rates::weak::IsotopeGrid']]]
 ];
diff --git a/docs/html/search/variables_b.js b/docs/html/search/variables_b.js
index 04dc908d..8ed65b52 100644
--- a/docs/html/search/variables_b.js
+++ b/docs/html/search/variables_b.js
@@ -1,10 +1,13 @@
 var searchData=
 [
   ['na_0',['Na',['../structgridfire_1_1_graph_engine_1_1constants.html#a5ccc874d6704615e0ce54c14dc67699d',1,'gridfire::GraphEngine::constants']]],
-  ['networkspecies_1',['networkSpecies',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#afee439e7b59805a6b4dcffffa2b0e6e3',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
-  ['niso_2',['nIso',['../structgridfire_1_1approx8_1_1_approx8_net.html#a31928b4041479da6515a90569322fc02',1,'gridfire::approx8::Approx8Net']]],
-  ['normalized_5fg_5fvalues_3',['normalized_g_values',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aea71e9198606e0ba393321178f988fcc',1,'gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData::normalized_g_values'],['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a64c1cef58c1bdeab1fcc7f9a30a71609',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord::normalized_g_values']]],
-  ['nuclearenergygenerationrate_4',['nuclearEnergyGenerationRate',['../structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008',1,'gridfire::StepDerivatives']]],
-  ['num_5fsteps_5',['num_steps',['../structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6',1,'gridfire::NetOut::num_steps'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#a85eab3fb76bcef5044b2be6cc60a46df',1,'gridfire::solver::DirectNetworkSolver::TimestepContext::num_steps']]],
-  ['nvar_6',['nVar',['../structgridfire_1_1approx8_1_1_approx8_net.html#a7218aa9b3dbe7c6eca52119e115692db',1,'gridfire::approx8::Approx8Net']]]
+  ['name_1',['name',['../structgridfire_1_1trigger_1_1_trigger_result.html#a1f27dd6d5cca43956812ec78cfb7be2d',1,'gridfire::trigger::TriggerResult']]],
+  ['networkspecies_2',['networkSpecies',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a75d7e32c9df3d8a047069fe2d64cd089',1,'gridfire::solver::CVODESolverStrategy::TimestepContext::networkSpecies'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a41a5bc46358cb59373f62c791e1bc29c',1,'gridfire::solver::CVODESolverStrategy::CVODEUserData::networkSpecies']]],
+  ['neutronmassg_3',['neutronMassG',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a2d6c6d4eb9b54c050c266298611c1e44',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['neutronmassmev_4',['neutronMassMeV',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a0629ea0e5d51166e400696a358b0045e',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['niso_5',['nIso',['../structgridfire_1_1approx8_1_1_approx8_net.html#a31928b4041479da6515a90569322fc02',1,'gridfire::approx8::Approx8Net']]],
+  ['normalized_5fg_5fvalues_6',['normalized_g_values',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aea71e9198606e0ba393321178f988fcc',1,'gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData::normalized_g_values'],['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a64c1cef58c1bdeab1fcc7f9a30a71609',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord::normalized_g_values']]],
+  ['nuclearenergygenerationrate_7',['nuclearEnergyGenerationRate',['../structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008',1,'gridfire::StepDerivatives']]],
+  ['num_5fsteps_8',['num_steps',['../structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6',1,'gridfire::NetOut::num_steps'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a51e86d2721053055d8479662b864e367',1,'gridfire::solver::CVODESolverStrategy::TimestepContext::num_steps']]],
+  ['nvar_9',['nVar',['../structgridfire_1_1approx8_1_1_approx8_net.html#a7218aa9b3dbe7c6eca52119e115692db',1,'gridfire::approx8::Approx8Net']]]
 ];
diff --git a/docs/html/search/variables_d.js b/docs/html/search/variables_d.js
index 09718243..24b0651c 100644
--- a/docs/html/search/variables_d.js
+++ b/docs/html/search/variables_d.js
@@ -3,5 +3,7 @@ var searchData=
   ['primedcomposition_0',['primedComposition',['../structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb',1,'gridfire::PrimingReport']]],
   ['primingreportstatusstrings_1',['PrimingReportStatusStrings',['../namespacegridfire.html#a02be158966bf82a91b159b7a962c3fa5',1,'gridfire']]],
   ['product_5fpowers_2',['product_powers',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3ce63aa3ad88568f4eb0d3ca2414209f',1,'gridfire::GraphEngine::PrecomputedReaction']]],
-  ['products_5fstr_3',['products_str',['../structgridfire_1_1reaclib_1_1_reaction_record.html#af1b1d3b0308d965ef0697b247fcf9082',1,'gridfire::reaclib::ReactionRecord']]]
+  ['products_5fstr_3',['products_str',['../structgridfire_1_1reaclib_1_1_reaction_record.html#af1b1d3b0308d965ef0697b247fcf9082',1,'gridfire::reaclib::ReactionRecord']]],
+  ['protonmassg_4',['protonMassG',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abdb3124f6ef5ea294f402d30717fa208',1,'gridfire::rates::weak::WeakReaction::constants']]],
+  ['protonmassmev_5',['protonMassMeV',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8a780d3937e60794f007ec65fe866a56',1,'gridfire::rates::weak::WeakReaction::constants']]]
 ];
diff --git a/docs/html/search/variables_e.js b/docs/html/search/variables_e.js
index 87a61027..a253100b 100644
--- a/docs/html/search/variables_e.js
+++ b/docs/html/search/variables_e.js
@@ -1,4 +1,5 @@
 var searchData=
 [
-  ['qvalue_0',['qValue',['../structgridfire_1_1reaclib_1_1_reaction_record.html#aeeb8a1e078a27420e398663825cce644',1,'gridfire::reaclib::ReactionRecord']]]
+  ['queryvalue_0',['queryValue',['../structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a3eb0be2063f7333994a026a569ae5568',1,'gridfire::rates::weak::BoundsErrorInfo']]],
+  ['qvalue_1',['qValue',['../structgridfire_1_1reaclib_1_1_reaction_record.html#aeeb8a1e078a27420e398663825cce644',1,'gridfire::reaclib::ReactionRecord']]]
 ];
diff --git a/docs/html/search/variables_f.js b/docs/html/search/variables_f.js
index d5f3523e..aacc8371 100644
--- a/docs/html/search/variables_f.js
+++ b/docs/html/search/variables_f.js
@@ -7,11 +7,12 @@ var searchData=
   ['reactant_5fpowers_4',['reactant_powers',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275',1,'gridfire::GraphEngine::PrecomputedReaction']]],
   ['reactants_5fstr_5',['reactants_str',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a67afc513db8dbcc43d79733e22ca8d39',1,'gridfire::reaclib::ReactionRecord']]],
   ['reaction_5findex_6',['reaction_index',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497',1,'gridfire::GraphEngine::PrecomputedReaction']]],
-  ['reactionptr_7',['reactionPtr',['../structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a3bb21f20df8115d37108cf3c3be3bc6f',1,'gridfire::AdaptiveEngineView::ReactionFlow']]],
+  ['reactionptr_7',['reactionPtr',['../structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#afc894db76a799be17be91130ff3ae6d9',1,'gridfire::AdaptiveEngineView::ReactionFlow']]],
   ['reverse_8',['reverse',['../structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd',1,'gridfire::reaclib::ReactionRecord']]],
   ['reverse_5fsymmetry_5ffactor_9',['reverse_symmetry_factor',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6bcfe2230dd54b088180d34389266b07',1,'gridfire::GraphEngine::PrecomputedReaction']]],
-  ['rho_10',['rho',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ad565c013b373f312f0f5157f11d02cef',1,'gridfire::solver::DirectNetworkSolver::TimestepContext']]],
+  ['rho_10',['rho',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a25afbc9f8a907304992e144dfa3529',1,'gridfire::solver::CVODESolverStrategy::TimestepContext::rho'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#afdc510f8160693806737c4ab517058b8',1,'gridfire::solver::CVODESolverStrategy::CVODEUserData::rho']]],
   ['rho_5ftol_11',['rho_tol',['../structgridfire_1_1_q_s_e_cache_config.html#a57b7ca68463aa9b78007e5cf35ebf7ce',1,'gridfire::QSECacheConfig']]],
-  ['rpname_12',['rpName',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a523b7cfb0a6d8ddccd785aef2f425ad1',1,'gridfire::reaclib::ReactionRecord']]],
-  ['rt_5ftemperature_5fgrid_5ft9_13',['RT_TEMPERATURE_GRID_T9',['../namespacegridfire_1_1partition.html#a1e08a3c20c55bc6fa4a4ecdf7ea57b8f',1,'gridfire::partition']]]
+  ['rhoye_5faxis_12',['rhoYe_axis',['../structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a30362f5bb497ae74cf6a10fd701273a0',1,'gridfire::rates::weak::IsotopeGrid']]],
+  ['rpname_13',['rpName',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a523b7cfb0a6d8ddccd785aef2f425ad1',1,'gridfire::reaclib::ReactionRecord']]],
+  ['rt_5ftemperature_5fgrid_5ft9_14',['RT_TEMPERATURE_GRID_T9',['../namespacegridfire_1_1partition.html#a1e08a3c20c55bc6fa4a4ecdf7ea57b8f',1,'gridfire::partition']]]
 ];
diff --git a/docs/html/solver_2bindings_8cpp.html b/docs/html/solver_2bindings_8cpp.html
index a6874af7..7498e90a 100644
--- a/docs/html/solver_2bindings_8cpp.html
+++ b/docs/html/solver_2bindings_8cpp.html
@@ -108,7 +108,6 @@ $(function(){initNavTree('solver_2bindings_8cpp.html',''); initResizable(true);
 <code>#include &lt;pybind11/stl.h&gt;</code><br />
 <code>#include &lt;pybind11/stl_bind.h&gt;</code><br />
 <code>#include &lt;pybind11/numpy.h&gt;</code><br />
-<code>#include &lt;pybind11/functional.h&gt;</code><br />
 <code>#include &lt;boost/numeric/ublas/vector.hpp&gt;</code><br />
 <code>#include &quot;<a class="el" href="solver_2bindings_8h.html">bindings.h</a>&quot;</code><br />
 <code>#include &quot;<a class="el" href="solver_8h.html">gridfire/solver/solver.h</a>&quot;</code><br />
diff --git a/docs/html/solver_8h.html b/docs/html/solver_8h.html
index 17b7f2d4..30a4c8ef 100644
--- a/docs/html/solver_8h.html
+++ b/docs/html/solver_8h.html
@@ -106,12 +106,8 @@ $(function(){initNavTree('solver_8h.html',''); initResizable(true); });
   <div class="headertitle"><div class="title">solver.h File Reference</div></div>
 </div><!--header-->
 <div class="contents">
-<div class="textblock"><code>#include &quot;<a class="el" href="engine__graph_8h.html">gridfire/engine/engine_graph.h</a>&quot;</code><br />
-<code>#include &quot;<a class="el" href="engine__abstract_8h.html">gridfire/engine/engine_abstract.h</a>&quot;</code><br />
+<div class="textblock"><code>#include &quot;<a class="el" href="engine__abstract_8h.html">gridfire/engine/engine_abstract.h</a>&quot;</code><br />
 <code>#include &quot;<a class="el" href="network_8h.html">gridfire/network.h</a>&quot;</code><br />
-<code>#include &quot;fourdst/logging/logging.h&quot;</code><br />
-<code>#include &quot;fourdst/config/config.h&quot;</code><br />
-<code>#include &quot;quill/Logger.h&quot;</code><br />
 <code>#include &lt;functional&gt;</code><br />
 <code>#include &lt;any&gt;</code><br />
 <code>#include &lt;vector&gt;</code><br />
@@ -126,18 +122,6 @@ Classes</h2></td></tr>
 <tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td></tr>
 <tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Abstract base class for network solver strategies.  <a href="classgridfire_1_1solver_1_1_network_solver_strategy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html">gridfire::solver::DirectNetworkSolver</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A network solver that directly integrates the reaction network ODEs.  <a href="classgridfire_1_1solver_1_1_direct_network_solver.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html">gridfire::solver::DirectNetworkSolver::TimestepContext</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Context for the timestep callback function for the <a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html" title="A network solver that directly integrates the reaction network ODEs.">DirectNetworkSolver</a>.  <a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html">gridfire::solver::DirectNetworkSolver::RHSManager</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Functor for calculating the right-hand side of the ODEs.  <a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Functor for calculating the Jacobian matrix.  <a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
 Namespaces</h2></td></tr>
diff --git a/docs/html/solver_8h.js b/docs/html/solver_8h.js
index 8be61403..cf9a1be2 100644
--- a/docs/html/solver_8h.js
+++ b/docs/html/solver_8h.js
@@ -2,9 +2,5 @@ var solver_8h =
 [
     [ "gridfire::solver::SolverContextBase", "structgridfire_1_1solver_1_1_solver_context_base.html", "structgridfire_1_1solver_1_1_solver_context_base" ],
     [ "gridfire::solver::NetworkSolverStrategy< EngineT >", "classgridfire_1_1solver_1_1_network_solver_strategy.html", "classgridfire_1_1solver_1_1_network_solver_strategy" ],
-    [ "gridfire::solver::DirectNetworkSolver", "classgridfire_1_1solver_1_1_direct_network_solver.html", "classgridfire_1_1solver_1_1_direct_network_solver" ],
-    [ "gridfire::solver::DirectNetworkSolver::TimestepContext", "structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html", "structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context" ],
-    [ "gridfire::solver::DirectNetworkSolver::RHSManager", "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html", "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager" ],
-    [ "gridfire::solver::DirectNetworkSolver::JacobianFunctor", "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html", "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor" ],
     [ "gridfire::solver::DynamicNetworkSolverStrategy", "namespacegridfire_1_1solver.html#a8118d08bc25e439754b43a3f5ecc1db3", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/solver__interfaces_8h.html b/docs/html/solver__interfaces_8h.html
new file mode 100644
index 00000000..46e34746
--- /dev/null
+++ b/docs/html/solver__interfaces_8h.html
@@ -0,0 +1,124 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/interfaces/solver/solver_interfaces.h File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('solver__interfaces_8h.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a>  </div>
+  <div class="headertitle"><div class="title">solver_interfaces.h File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><code>#include &quot;fourdst/plugin/plugin.h&quot;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_solver_plugin_interface.html">SolverPluginInterface</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_f4383b1846ef599868e873d917f1344c.html">interfaces</a></li><li class="navelem"><a class="el" href="dir_ab918a70d5de27403bd1202d71acc71b.html">solver</a></li><li class="navelem"><a class="el" href="solver__interfaces_8h.html">solver_interfaces.h</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/solver__interfaces_8h.js b/docs/html/solver__interfaces_8h.js
new file mode 100644
index 00000000..dc054988
--- /dev/null
+++ b/docs/html/solver__interfaces_8h.js
@@ -0,0 +1,4 @@
+var solver__interfaces_8h =
+[
+    [ "SolverPluginInterface", "class_solver_plugin_interface.html", "class_solver_plugin_interface" ]
+];
\ No newline at end of file
diff --git a/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow-members.html b/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow-members.html
index 52976f99..e167b916 100644
--- a/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow-members.html
+++ b/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow-members.html
@@ -106,7 +106,7 @@ $(function(){initNavTree('structgridfire_1_1_adaptive_engine_view_1_1_reaction_f
 <p>This is the complete list of members for <a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html">gridfire::AdaptiveEngineView::ReactionFlow</a>, including all inherited members.</p>
 <table class="directory">
   <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a6c2e9087f6c8af5d89a5f0de7bd4a5b4">flowRate</a></td><td class="entry"><a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html">gridfire::AdaptiveEngineView::ReactionFlow</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a3bb21f20df8115d37108cf3c3be3bc6f">reactionPtr</a></td><td class="entry"><a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html">gridfire::AdaptiveEngineView::ReactionFlow</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#afc894db76a799be17be91130ff3ae6d9">reactionPtr</a></td><td class="entry"><a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html">gridfire::AdaptiveEngineView::ReactionFlow</a></td><td class="entry"></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html b/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html
index 6b7fbc1e..cee47f94 100644
--- a/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html
+++ b/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html
@@ -111,8 +111,8 @@ $(function(){initNavTree('structgridfire_1_1_adaptive_engine_view_1_1_reaction_f
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
 Public Attributes</h2></td></tr>
-<tr class="memitem:a3bb21f20df8115d37108cf3c3be3bc6f" id="r_a3bb21f20df8115d37108cf3c3be3bc6f"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html">reaction::LogicalReaction</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3bb21f20df8115d37108cf3c3be3bc6f">reactionPtr</a></td></tr>
-<tr class="separator:a3bb21f20df8115d37108cf3c3be3bc6f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afc894db76a799be17be91130ff3ae6d9" id="r_afc894db76a799be17be91130ff3ae6d9"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afc894db76a799be17be91130ff3ae6d9">reactionPtr</a></td></tr>
+<tr class="separator:afc894db76a799be17be91130ff3ae6d9"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a6c2e9087f6c8af5d89a5f0de7bd4a5b4" id="r_a6c2e9087f6c8af5d89a5f0de7bd4a5b4"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6c2e9087f6c8af5d89a5f0de7bd4a5b4">flowRate</a></td></tr>
 <tr class="separator:a6c2e9087f6c8af5d89a5f0de7bd4a5b4"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
@@ -133,14 +133,14 @@ Public Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a3bb21f20df8115d37108cf3c3be3bc6f" name="a3bb21f20df8115d37108cf3c3be3bc6f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3bb21f20df8115d37108cf3c3be3bc6f">&#9670;&#160;</a></span>reactionPtr</h2>
+<a id="afc894db76a799be17be91130ff3ae6d9" name="afc894db76a799be17be91130ff3ae6d9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afc894db76a799be17be91130ff3ae6d9">&#9670;&#160;</a></span>reactionPtr</h2>
 
 <div class="memitem">
 <div class="memproto">
       <table class="memname">
         <tr>
-          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html">reaction::LogicalReaction</a>* gridfire::AdaptiveEngineView::ReactionFlow::reactionPtr</td>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a>* gridfire::AdaptiveEngineView::ReactionFlow::reactionPtr</td>
         </tr>
       </table>
 </div><div class="memdoc">
diff --git a/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.js b/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.js
index 0a73992f..c5e10a61 100644
--- a/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.js
+++ b/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.js
@@ -1,5 +1,5 @@
 var structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow =
 [
     [ "flowRate", "structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a6c2e9087f6c8af5d89a5f0de7bd4a5b4", null ],
-    [ "reactionPtr", "structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a3bb21f20df8115d37108cf3c3be3bc6f", null ]
+    [ "reactionPtr", "structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#afc894db76a799be17be91130ff3ae6d9", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/structgridfire_1_1_energy_derivatives-members.html b/docs/html/structgridfire_1_1_energy_derivatives-members.html
new file mode 100644
index 00000000..bd5b7daa
--- /dev/null
+++ b/docs/html/structgridfire_1_1_energy_derivatives-members.html
@@ -0,0 +1,120 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1_energy_derivatives.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::EnergyDerivatives Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1_energy_derivatives.html">gridfire::EnergyDerivatives</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_energy_derivatives.html#adc09db042b1fdee7468c807491245046">dEps_dRho</a></td><td class="entry"><a class="el" href="structgridfire_1_1_energy_derivatives.html">gridfire::EnergyDerivatives</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_energy_derivatives.html#a70ae455c021a950fda7bda3022456542">dEps_dT</a></td><td class="entry"><a class="el" href="structgridfire_1_1_energy_derivatives.html">gridfire::EnergyDerivatives</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_energy_derivatives.html#aa974abdff7fe09c9aea3fcf4ae13b652">operator&lt;&lt;</a>(std::ostream &amp;os, const EnergyDerivatives &amp;ed)</td><td class="entry"><a class="el" href="structgridfire_1_1_energy_derivatives.html">gridfire::EnergyDerivatives</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1_energy_derivatives.html b/docs/html/structgridfire_1_1_energy_derivatives.html
new file mode 100644
index 00000000..ef6d0adc
--- /dev/null
+++ b/docs/html/structgridfire_1_1_energy_derivatives.html
@@ -0,0 +1,202 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::EnergyDerivatives Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1_energy_derivatives.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="structgridfire_1_1_energy_derivatives-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::EnergyDerivatives Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;engine_abstract.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a70ae455c021a950fda7bda3022456542" id="r_a70ae455c021a950fda7bda3022456542"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a70ae455c021a950fda7bda3022456542">dEps_dT</a> = 0.0</td></tr>
+<tr class="memdesc:a70ae455c021a950fda7bda3022456542"><td class="mdescLeft">&#160;</td><td class="mdescRight">Partial derivative of energy generation rate with respect to temperature.  <br /></td></tr>
+<tr class="separator:a70ae455c021a950fda7bda3022456542"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adc09db042b1fdee7468c807491245046" id="r_adc09db042b1fdee7468c807491245046"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#adc09db042b1fdee7468c807491245046">dEps_dRho</a> = 0.0</td></tr>
+<tr class="memdesc:adc09db042b1fdee7468c807491245046"><td class="mdescLeft">&#160;</td><td class="mdescRight">Partial derivative of energy generation rate with respect to density.  <br /></td></tr>
+<tr class="separator:adc09db042b1fdee7468c807491245046"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="friends" name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:aa974abdff7fe09c9aea3fcf4ae13b652" id="r_aa974abdff7fe09c9aea3fcf4ae13b652"><td class="memItemLeft" align="right" valign="top">std::ostream &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa974abdff7fe09c9aea3fcf4ae13b652">operator&lt;&lt;</a> (std::ostream &amp;os, const <a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a> &amp;ed)</td></tr>
+<tr class="separator:aa974abdff7fe09c9aea3fcf4ae13b652"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Friends And Related Symbol Documentation</h2>
+<a id="aa974abdff7fe09c9aea3fcf4ae13b652" name="aa974abdff7fe09c9aea3fcf4ae13b652"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa974abdff7fe09c9aea3fcf4ae13b652">&#9670;&#160;</a></span>operator&lt;&lt;</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::ostream &amp; operator&lt;&lt; </td>
+          <td>(</td>
+          <td class="paramtype">std::ostream &amp;</td>          <td class="paramname"><span class="paramname"><em>os</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>ed</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel friend">friend</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="adc09db042b1fdee7468c807491245046" name="adc09db042b1fdee7468c807491245046"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adc09db042b1fdee7468c807491245046">&#9670;&#160;</a></span>dEps_dRho</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::EnergyDerivatives::dEps_dRho = 0.0</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Partial derivative of energy generation rate with respect to density. </p>
+
+</div>
+</div>
+<a id="a70ae455c021a950fda7bda3022456542" name="a70ae455c021a950fda7bda3022456542"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a70ae455c021a950fda7bda3022456542">&#9670;&#160;</a></span>dEps_dT</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::EnergyDerivatives::dEps_dT = 0.0</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Partial derivative of energy generation rate with respect to temperature. </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/engine/<a class="el" href="engine__abstract_8h.html">engine_abstract.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="structgridfire_1_1_energy_derivatives.html">EnergyDerivatives</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1_energy_derivatives.js b/docs/html/structgridfire_1_1_energy_derivatives.js
new file mode 100644
index 00000000..cd5f3ec8
--- /dev/null
+++ b/docs/html/structgridfire_1_1_energy_derivatives.js
@@ -0,0 +1,6 @@
+var structgridfire_1_1_energy_derivatives =
+[
+    [ "operator<<", "structgridfire_1_1_energy_derivatives.html#aa974abdff7fe09c9aea3fcf4ae13b652", null ],
+    [ "dEps_dRho", "structgridfire_1_1_energy_derivatives.html#adc09db042b1fdee7468c807491245046", null ],
+    [ "dEps_dT", "structgridfire_1_1_energy_derivatives.html#a70ae455c021a950fda7bda3022456542", null ]
+];
\ No newline at end of file
diff --git a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html
index 3a4d0e3b..63ce8610 100644
--- a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html
+++ b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html
@@ -377,12 +377,12 @@ Public Attributes</h2></td></tr>
 <div class="line">                {<a class="code hl_enumvalue" href="#ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061">operators::GetSpeciesDestructionTimescales</a>, 0},</div>
 <div class="line">                {<a class="code hl_enumvalue" href="#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387">operators::Other</a>, 0}</div>
 <div class="line">            }</div>
-<div class="ttc" id="astructgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats_html_ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894"><div class="ttname"><a href="#ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894">gridfire::MultiscalePartitioningEngineView::CacheStats::operators::CalculateMolarReactionFlow</a></div><div class="ttdeci">@ CalculateMolarReactionFlow</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:879</div></div>
-<div class="ttc" id="astructgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats_html_ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387"><div class="ttname"><a href="#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387">gridfire::MultiscalePartitioningEngineView::CacheStats::operators::Other</a></div><div class="ttdeci">@ Other</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:882</div></div>
-<div class="ttc" id="astructgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats_html_ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a"><div class="ttname"><a href="#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a">gridfire::MultiscalePartitioningEngineView::CacheStats::operators::GetSpeciesTimescales</a></div><div class="ttdeci">@ GetSpeciesTimescales</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:880</div></div>
-<div class="ttc" id="astructgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats_html_ac558e59f790508a5e8522c412be5b505a9e720102de6020a01552bc0e8935c566"><div class="ttname"><a href="#ac558e59f790508a5e8522c412be5b505a9e720102de6020a01552bc0e8935c566">gridfire::MultiscalePartitioningEngineView::CacheStats::operators::GenerateJacobianMatrix</a></div><div class="ttdeci">@ GenerateJacobianMatrix</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:878</div></div>
-<div class="ttc" id="astructgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats_html_ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061"><div class="ttname"><a href="#ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061">gridfire::MultiscalePartitioningEngineView::CacheStats::operators::GetSpeciesDestructionTimescales</a></div><div class="ttdeci">@ GetSpeciesDestructionTimescales</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:881</div></div>
-<div class="ttc" id="astructgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats_html_ac558e59f790508a5e8522c412be5b505aafefea58639f78d7c750970bbad28420"><div class="ttname"><a href="#ac558e59f790508a5e8522c412be5b505aafefea58639f78d7c750970bbad28420">gridfire::MultiscalePartitioningEngineView::CacheStats::operators::CalculateRHSAndEnergy</a></div><div class="ttdeci">@ CalculateRHSAndEnergy</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:877</div></div>
+<div class="ttc" id="astructgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats_html_ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894"><div class="ttname"><a href="#ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894">gridfire::MultiscalePartitioningEngineView::CacheStats::operators::CalculateMolarReactionFlow</a></div><div class="ttdeci">@ CalculateMolarReactionFlow</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:892</div></div>
+<div class="ttc" id="astructgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats_html_ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387"><div class="ttname"><a href="#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387">gridfire::MultiscalePartitioningEngineView::CacheStats::operators::Other</a></div><div class="ttdeci">@ Other</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:895</div></div>
+<div class="ttc" id="astructgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats_html_ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a"><div class="ttname"><a href="#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a">gridfire::MultiscalePartitioningEngineView::CacheStats::operators::GetSpeciesTimescales</a></div><div class="ttdeci">@ GetSpeciesTimescales</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:893</div></div>
+<div class="ttc" id="astructgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats_html_ac558e59f790508a5e8522c412be5b505a9e720102de6020a01552bc0e8935c566"><div class="ttname"><a href="#ac558e59f790508a5e8522c412be5b505a9e720102de6020a01552bc0e8935c566">gridfire::MultiscalePartitioningEngineView::CacheStats::operators::GenerateJacobianMatrix</a></div><div class="ttdeci">@ GenerateJacobianMatrix</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:891</div></div>
+<div class="ttc" id="astructgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats_html_ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061"><div class="ttname"><a href="#ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061">gridfire::MultiscalePartitioningEngineView::CacheStats::operators::GetSpeciesDestructionTimescales</a></div><div class="ttdeci">@ GetSpeciesDestructionTimescales</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:894</div></div>
+<div class="ttc" id="astructgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats_html_ac558e59f790508a5e8522c412be5b505aafefea58639f78d7c750970bbad28420"><div class="ttname"><a href="#ac558e59f790508a5e8522c412be5b505aafefea58639f78d7c750970bbad28420">gridfire::MultiscalePartitioningEngineView::CacheStats::operators::CalculateRHSAndEnergy</a></div><div class="ttdeci">@ CalculateRHSAndEnergy</div><div class="ttdef"><b>Definition</b> engine_multiscale.h:890</div></div>
 </div><!-- fragment -->
 <p>Map from operators to the number of cache hits for that operator. </p>
 
diff --git a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor-members.html b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor-members.html
index 83a5c64a..c51f568b 100644
--- a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor-members.html
+++ b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor-members.html
@@ -106,21 +106,22 @@ $(function(){initNavTree('structgridfire_1_1_multiscale_partitioning_engine_view
 <p>This is the complete list of members for <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a>, including all inherited members.</p>
 <table class="directory">
   <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc">df</a>(const InputType &amp;v_qse, JacobianType &amp;J_qse) const</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a1aa29df77925443796e1e59c1b7b7a60">EigenFunctor</a>(MultiscalePartitioningEngineView &amp;view, const std::vector&lt; size_t &gt; &amp;qse_solve_indices, const std::vector&lt; double &gt; &amp;Y_full_initial, const double T9, const double rho, const Eigen::VectorXd &amp;Y_scale)</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a0adf1074b5e6ba448cedff7563c450d0">inputs</a>() const</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a24463a5e83e096ef368878ad29fdafb6">EigenFunctor</a>(MultiscalePartitioningEngineView &amp;view, const std::set&lt; fourdst::atomic::Species &gt; &amp;qse_solve_species, const fourdst::composition::Composition &amp;initial_comp, const double T9, const double rho, const Eigen::VectorXd &amp;Y_scale, const std::unordered_map&lt; fourdst::atomic::Species, size_t &gt; &amp;qse_solve_species_index_map)</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad19c39ced17e400af9f46478546a8fa1">inputs</a>() const</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a753b594931f9ee122e2079986ad572c9">InputsAtCompileTime</a> enum value</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3ebf684b36e98da38d8ee6f0be4f91e2">InputType</a> typedef</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7353c20a6eac2ac0d9d13791577080d">JacobianType</a> typedef</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4eb11e99dc2a7e038d815bf7c6bd0be8">m_qse_solve_indices</a></td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ac5bf1e4b4ac8435af5739ce970b373d7">m_initial_comp</a></td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4804c6481c2706b04f48c1bbfd9fd5f8">m_qse_solve_species</a></td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a23e6ba8dfe37b7f167837296a6654684">m_qse_solve_species_index_map</a></td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c">m_rho</a></td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678">m_T9</a></td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7">m_view</a></td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3bc901d2d8234d1f61e94d0fe0777f7d">m_Y_full_initial</a></td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5">m_Y_scale</a></td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28">operator()</a>(const InputType &amp;v_qse, OutputType &amp;f_qse) const</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0">OutputType</a> typedef</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6d13bb5294f5dae7e2eb1d26720f944e">values</a>() const</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a29d2722f9dbe03584086bc1ab8e102c0">ValuesAtCompileTime</a> enum value</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5">m_Y_scale</a></td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28">operator()</a>(const InputType &amp;v_qse, OutputType &amp;f_qse) const</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0">OutputType</a> typedef</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6f5611ca669567534df1bd793e90d2e3">values</a>() const</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a29d2722f9dbe03584086bc1ab8e102c0">ValuesAtCompileTime</a> enum value</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></td><td class="entry"></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html
index ea188e46..1183a7c2 100644
--- a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html
+++ b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html
@@ -126,15 +126,15 @@ Public Types</h2></td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
 Public Member Functions</h2></td></tr>
-<tr class="memitem:a1aa29df77925443796e1e59c1b7b7a60" id="r_a1aa29df77925443796e1e59c1b7b7a60"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1aa29df77925443796e1e59c1b7b7a60">EigenFunctor</a> (<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">MultiscalePartitioningEngineView</a> &amp;view, const std::vector&lt; size_t &gt; &amp;qse_solve_indices, const std::vector&lt; double &gt; &amp;Y_full_initial, const double T9, const double rho, const Eigen::VectorXd &amp;Y_scale)</td></tr>
-<tr class="memdesc:a1aa29df77925443796e1e59c1b7b7a60"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs an <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html" title="Functor for solving QSE abundances using Eigen&#39;s nonlinear optimization.">EigenFunctor</a>.  <br /></td></tr>
-<tr class="separator:a1aa29df77925443796e1e59c1b7b7a60"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6d13bb5294f5dae7e2eb1d26720f944e" id="r_a6d13bb5294f5dae7e2eb1d26720f944e"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6d13bb5294f5dae7e2eb1d26720f944e">values</a> () const</td></tr>
-<tr class="memdesc:a6d13bb5294f5dae7e2eb1d26720f944e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the number of output values from the functor (size of the residual vector).  <br /></td></tr>
-<tr class="separator:a6d13bb5294f5dae7e2eb1d26720f944e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0adf1074b5e6ba448cedff7563c450d0" id="r_a0adf1074b5e6ba448cedff7563c450d0"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0adf1074b5e6ba448cedff7563c450d0">inputs</a> () const</td></tr>
-<tr class="memdesc:a0adf1074b5e6ba448cedff7563c450d0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the number of input values to the functor (size of the variable vector).  <br /></td></tr>
-<tr class="separator:a0adf1074b5e6ba448cedff7563c450d0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a24463a5e83e096ef368878ad29fdafb6" id="r_a24463a5e83e096ef368878ad29fdafb6"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a24463a5e83e096ef368878ad29fdafb6">EigenFunctor</a> (<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">MultiscalePartitioningEngineView</a> &amp;view, const std::set&lt; fourdst::atomic::Species &gt; &amp;qse_solve_species, const fourdst::composition::Composition &amp;initial_comp, const double T9, const double rho, const Eigen::VectorXd &amp;Y_scale, const std::unordered_map&lt; fourdst::atomic::Species, size_t &gt; &amp;qse_solve_species_index_map)</td></tr>
+<tr class="memdesc:a24463a5e83e096ef368878ad29fdafb6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs an <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html" title="Functor for solving QSE abundances using Eigen&#39;s nonlinear optimization.">EigenFunctor</a>.  <br /></td></tr>
+<tr class="separator:a24463a5e83e096ef368878ad29fdafb6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6f5611ca669567534df1bd793e90d2e3" id="r_a6f5611ca669567534df1bd793e90d2e3"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6f5611ca669567534df1bd793e90d2e3">values</a> () const</td></tr>
+<tr class="memdesc:a6f5611ca669567534df1bd793e90d2e3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the number of output values from the functor (size of the residual vector).  <br /></td></tr>
+<tr class="separator:a6f5611ca669567534df1bd793e90d2e3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad19c39ced17e400af9f46478546a8fa1" id="r_ad19c39ced17e400af9f46478546a8fa1"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad19c39ced17e400af9f46478546a8fa1">inputs</a> () const</td></tr>
+<tr class="memdesc:ad19c39ced17e400af9f46478546a8fa1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the number of input values to the functor (size of the variable vector).  <br /></td></tr>
+<tr class="separator:ad19c39ced17e400af9f46478546a8fa1"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:ad7bd060a3eaaaefab0c31e60dcdb5f28" id="r_ad7bd060a3eaaaefab0c31e60dcdb5f28"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad7bd060a3eaaaefab0c31e60dcdb5f28">operator()</a> (const <a class="el" href="#a3ebf684b36e98da38d8ee6f0be4f91e2">InputType</a> &amp;v_qse, <a class="el" href="#a4d597d16bd9f982d44512d5a6beddae0">OutputType</a> &amp;f_qse) const</td></tr>
 <tr class="memdesc:ad7bd060a3eaaaefab0c31e60dcdb5f28"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluates the functor's residual vector <code>f_qse = dY_alg/dt</code>.  <br /></td></tr>
 <tr class="separator:ad7bd060a3eaaaefab0c31e60dcdb5f28"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -147,12 +147,12 @@ Public Attributes</h2></td></tr>
 <tr class="memitem:af2acc70592e5545f9e8f0a33e10ffdc7" id="r_af2acc70592e5545f9e8f0a33e10ffdc7"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">MultiscalePartitioningEngineView</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af2acc70592e5545f9e8f0a33e10ffdc7">m_view</a></td></tr>
 <tr class="memdesc:af2acc70592e5545f9e8f0a33e10ffdc7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pointer to the <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html" title="An engine view that partitions the reaction network into multiple groups based on timescales.">MultiscalePartitioningEngineView</a> instance.  <br /></td></tr>
 <tr class="separator:af2acc70592e5545f9e8f0a33e10ffdc7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4eb11e99dc2a7e038d815bf7c6bd0be8" id="r_a4eb11e99dc2a7e038d815bf7c6bd0be8"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; size_t &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4eb11e99dc2a7e038d815bf7c6bd0be8">m_qse_solve_indices</a></td></tr>
-<tr class="memdesc:a4eb11e99dc2a7e038d815bf7c6bd0be8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Indices of the species to solve for in the QSE group.  <br /></td></tr>
-<tr class="separator:a4eb11e99dc2a7e038d815bf7c6bd0be8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3bc901d2d8234d1f61e94d0fe0777f7d" id="r_a3bc901d2d8234d1f61e94d0fe0777f7d"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; double &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3bc901d2d8234d1f61e94d0fe0777f7d">m_Y_full_initial</a></td></tr>
-<tr class="memdesc:a3bc901d2d8234d1f61e94d0fe0777f7d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initial abundances of all species in the full network.  <br /></td></tr>
-<tr class="separator:a3bc901d2d8234d1f61e94d0fe0777f7d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4804c6481c2706b04f48c1bbfd9fd5f8" id="r_a4804c6481c2706b04f48c1bbfd9fd5f8"><td class="memItemLeft" align="right" valign="top">const std::set&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4804c6481c2706b04f48c1bbfd9fd5f8">m_qse_solve_species</a></td></tr>
+<tr class="memdesc:a4804c6481c2706b04f48c1bbfd9fd5f8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Indices of the species to solve for in the QSE group.  <br /></td></tr>
+<tr class="separator:a4804c6481c2706b04f48c1bbfd9fd5f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac5bf1e4b4ac8435af5739ce970b373d7" id="r_ac5bf1e4b4ac8435af5739ce970b373d7"><td class="memItemLeft" align="right" valign="top">const fourdst::composition::Composition &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac5bf1e4b4ac8435af5739ce970b373d7">m_initial_comp</a></td></tr>
+<tr class="memdesc:ac5bf1e4b4ac8435af5739ce970b373d7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initial abundances of all species in the full network.  <br /></td></tr>
+<tr class="separator:ac5bf1e4b4ac8435af5739ce970b373d7"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a7f65ed75e9dca9b6e1160ad297e07678" id="r_a7f65ed75e9dca9b6e1160ad297e07678"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7f65ed75e9dca9b6e1160ad297e07678">m_T9</a></td></tr>
 <tr class="memdesc:a7f65ed75e9dca9b6e1160ad297e07678"><td class="mdescLeft">&#160;</td><td class="mdescRight">Temperature in units of 10^9 K.  <br /></td></tr>
 <tr class="separator:a7f65ed75e9dca9b6e1160ad297e07678"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -162,6 +162,9 @@ Public Attributes</h2></td></tr>
 <tr class="memitem:a8dd40205db7aef439b6f04289ca5dfd5" id="r_a8dd40205db7aef439b6f04289ca5dfd5"><td class="memItemLeft" align="right" valign="top">const Eigen::VectorXd &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8dd40205db7aef439b6f04289ca5dfd5">m_Y_scale</a></td></tr>
 <tr class="memdesc:a8dd40205db7aef439b6f04289ca5dfd5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Scaling factors for the species abundances, used to improve solver stability.  <br /></td></tr>
 <tr class="separator:a8dd40205db7aef439b6f04289ca5dfd5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a23e6ba8dfe37b7f167837296a6654684" id="r_a23e6ba8dfe37b7f167837296a6654684"><td class="memItemLeft" align="right" valign="top">const std::unordered_map&lt; fourdst::atomic::Species, size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a23e6ba8dfe37b7f167837296a6654684">m_qse_solve_species_index_map</a></td></tr>
+<tr class="memdesc:a23e6ba8dfe37b7f167837296a6654684"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mapping from species to their indices in the QSE solve vector.  <br /></td></tr>
+<tr class="separator:a23e6ba8dfe37b7f167837296a6654684"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
 <div class="textblock"><p>Functor for solving QSE abundances using Eigen's nonlinear optimization. </p>
@@ -234,8 +237,8 @@ Public Attributes</h2></td></tr>
 </div>
 </div>
 <h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
-<a id="a1aa29df77925443796e1e59c1b7b7a60" name="a1aa29df77925443796e1e59c1b7b7a60"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1aa29df77925443796e1e59c1b7b7a60">&#9670;&#160;</a></span>EigenFunctor()</h2>
+<a id="a24463a5e83e096ef368878ad29fdafb6" name="a24463a5e83e096ef368878ad29fdafb6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a24463a5e83e096ef368878ad29fdafb6">&#9670;&#160;</a></span>EigenFunctor()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -251,12 +254,12 @@ Public Attributes</h2></td></tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; size_t &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>qse_solve_indices</em></span>, </td>
+          <td class="paramtype">const std::set&lt; fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>qse_solve_species</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_full_initial</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>initial_comp</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
@@ -271,7 +274,12 @@ Public Attributes</h2></td></tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const Eigen::VectorXd &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_scale</em></span>&#160;)</td>
+          <td class="paramtype">const Eigen::VectorXd &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_scale</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; fourdst::atomic::Species, size_t &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>qse_solve_species_index_map</em></span>&#160;)</td>
         </tr>
       </table>
   </td>
@@ -285,11 +293,12 @@ Public Attributes</h2></td></tr>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
     <tr><td class="paramname">view</td><td>The <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html" title="An engine view that partitions the reaction network into multiple groups based on timescales.">MultiscalePartitioningEngineView</a> instance. </td></tr>
-    <tr><td class="paramname">qse_solve_indices</td><td>Indices of the species to solve for in the QSE group. </td></tr>
-    <tr><td class="paramname">Y_full_initial</td><td>Initial abundances of all species. </td></tr>
+    <tr><td class="paramname">qse_solve_species</td><td>Species to solve for in the QSE group. </td></tr>
+    <tr><td class="paramname">initial_comp</td><td>Initial abundances of all species in the full network. </td></tr>
     <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
     <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
     <tr><td class="paramname">Y_scale</td><td>Scaling factors for the species abundances. </td></tr>
+    <tr><td class="paramname">qse_solve_species_index_map</td><td>Mapping from species to their indices in the QSE solve vector. </td></tr>
   </table>
   </dd>
 </dl>
@@ -328,8 +337,8 @@ Public Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a0adf1074b5e6ba448cedff7563c450d0" name="a0adf1074b5e6ba448cedff7563c450d0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0adf1074b5e6ba448cedff7563c450d0">&#9670;&#160;</a></span>inputs()</h2>
+<a id="ad19c39ced17e400af9f46478546a8fa1" name="ad19c39ced17e400af9f46478546a8fa1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad19c39ced17e400af9f46478546a8fa1">&#9670;&#160;</a></span>inputs()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -338,7 +347,7 @@ Public Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">int gridfire::MultiscalePartitioningEngineView::EigenFunctor::inputs </td>
+          <td class="memname">size_t gridfire::MultiscalePartitioningEngineView::EigenFunctor::inputs </td>
           <td>(</td>
           <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
           <td> const</td>
@@ -387,8 +396,8 @@ Public Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a6d13bb5294f5dae7e2eb1d26720f944e" name="a6d13bb5294f5dae7e2eb1d26720f944e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6d13bb5294f5dae7e2eb1d26720f944e">&#9670;&#160;</a></span>values()</h2>
+<a id="a6f5611ca669567534df1bd793e90d2e3" name="a6f5611ca669567534df1bd793e90d2e3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6f5611ca669567534df1bd793e90d2e3">&#9670;&#160;</a></span>values()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -397,7 +406,7 @@ Public Attributes</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">int gridfire::MultiscalePartitioningEngineView::EigenFunctor::values </td>
+          <td class="memname">size_t gridfire::MultiscalePartitioningEngineView::EigenFunctor::values </td>
           <td>(</td>
           <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
           <td> const</td>
@@ -416,20 +425,52 @@ Public Attributes</h2></td></tr>
 </div>
 </div>
 <h2 class="groupheader">Member Data Documentation</h2>
-<a id="a4eb11e99dc2a7e038d815bf7c6bd0be8" name="a4eb11e99dc2a7e038d815bf7c6bd0be8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4eb11e99dc2a7e038d815bf7c6bd0be8">&#9670;&#160;</a></span>m_qse_solve_indices</h2>
+<a id="ac5bf1e4b4ac8435af5739ce970b373d7" name="ac5bf1e4b4ac8435af5739ce970b373d7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac5bf1e4b4ac8435af5739ce970b373d7">&#9670;&#160;</a></span>m_initial_comp</h2>
 
 <div class="memitem">
 <div class="memproto">
       <table class="memname">
         <tr>
-          <td class="memname">const std::vector&lt;size_t&gt;&amp; gridfire::MultiscalePartitioningEngineView::EigenFunctor::m_qse_solve_indices</td>
+          <td class="memname">const fourdst::composition::Composition&amp; gridfire::MultiscalePartitioningEngineView::EigenFunctor::m_initial_comp</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Initial abundances of all species in the full network. </p>
+
+</div>
+</div>
+<a id="a4804c6481c2706b04f48c1bbfd9fd5f8" name="a4804c6481c2706b04f48c1bbfd9fd5f8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4804c6481c2706b04f48c1bbfd9fd5f8">&#9670;&#160;</a></span>m_qse_solve_species</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::set&lt;fourdst::atomic::Species&gt;&amp; gridfire::MultiscalePartitioningEngineView::EigenFunctor::m_qse_solve_species</td>
         </tr>
       </table>
 </div><div class="memdoc">
 
 <p>Indices of the species to solve for in the QSE group. </p>
 
+</div>
+</div>
+<a id="a23e6ba8dfe37b7f167837296a6654684" name="a23e6ba8dfe37b7f167837296a6654684"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a23e6ba8dfe37b7f167837296a6654684">&#9670;&#160;</a></span>m_qse_solve_species_index_map</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::unordered_map&lt;fourdst::atomic::Species, size_t&gt; gridfire::MultiscalePartitioningEngineView::EigenFunctor::m_qse_solve_species_index_map</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Mapping from species to their indices in the QSE solve vector. </p>
+
 </div>
 </div>
 <a id="a4dc013f4fb9d93b38ef601741dbe4d4c" name="a4dc013f4fb9d93b38ef601741dbe4d4c"></a>
@@ -478,22 +519,6 @@ Public Attributes</h2></td></tr>
 
 <p>Pointer to the <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html" title="An engine view that partitions the reaction network into multiple groups based on timescales.">MultiscalePartitioningEngineView</a> instance. </p>
 
-</div>
-</div>
-<a id="a3bc901d2d8234d1f61e94d0fe0777f7d" name="a3bc901d2d8234d1f61e94d0fe0777f7d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3bc901d2d8234d1f61e94d0fe0777f7d">&#9670;&#160;</a></span>m_Y_full_initial</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">const std::vector&lt;double&gt;&amp; gridfire::MultiscalePartitioningEngineView::EigenFunctor::m_Y_full_initial</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Initial abundances of all species in the full network. </p>
-
 </div>
 </div>
 <a id="a8dd40205db7aef439b6f04289ca5dfd5" name="a8dd40205db7aef439b6f04289ca5dfd5"></a>
diff --git a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.js b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.js
index 769ca092..e5cf9324 100644
--- a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.js
+++ b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.js
@@ -3,15 +3,16 @@ var structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor =
     [ "InputType", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3ebf684b36e98da38d8ee6f0be4f91e2", null ],
     [ "JacobianType", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7353c20a6eac2ac0d9d13791577080d", null ],
     [ "OutputType", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0", null ],
-    [ "EigenFunctor", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a1aa29df77925443796e1e59c1b7b7a60", null ],
+    [ "EigenFunctor", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a24463a5e83e096ef368878ad29fdafb6", null ],
     [ "df", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc", null ],
-    [ "inputs", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a0adf1074b5e6ba448cedff7563c450d0", null ],
+    [ "inputs", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad19c39ced17e400af9f46478546a8fa1", null ],
     [ "operator()", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28", null ],
-    [ "values", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6d13bb5294f5dae7e2eb1d26720f944e", null ],
-    [ "m_qse_solve_indices", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4eb11e99dc2a7e038d815bf7c6bd0be8", null ],
+    [ "values", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6f5611ca669567534df1bd793e90d2e3", null ],
+    [ "m_initial_comp", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ac5bf1e4b4ac8435af5739ce970b373d7", null ],
+    [ "m_qse_solve_species", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4804c6481c2706b04f48c1bbfd9fd5f8", null ],
+    [ "m_qse_solve_species_index_map", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a23e6ba8dfe37b7f167837296a6654684", null ],
     [ "m_rho", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c", null ],
     [ "m_T9", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678", null ],
     [ "m_view", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7", null ],
-    [ "m_Y_full_initial", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3bc901d2d8234d1f61e94d0fe0777f7d", null ],
     [ "m_Y_scale", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group-members.html b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group-members.html
index 5cc8c2ae..c69c55e5 100644
--- a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group-members.html
+++ b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group-members.html
@@ -105,15 +105,15 @@ $(function(){initNavTree('structgridfire_1_1_multiscale_partitioning_engine_view
 
 <p>This is the complete list of members for <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">gridfire::MultiscalePartitioningEngineView::QSEGroup</a>, including all inherited members.</p>
 <table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ab11be6e7afeef1ac9e4314ad8345e0b0">algebraic_indices</a></td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#aff54b71dd17051bc991f747a328c7d8e">algebraic_species</a></td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06">is_in_equilibrium</a></td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9">mean_timescale</a></td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a">operator!=</a>(const QSEGroup &amp;other) const</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06">operator&lt;</a>(const QSEGroup &amp;other) const</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88">operator==</a>(const QSEGroup &amp;other) const</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a">operator&gt;</a>(const QSEGroup &amp;other) const</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
-  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681">seed_indices</a></td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e">species_indices</a></td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af2d7e09d940e0fb3ca24a4bc8ec01031">seed_species</a></td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a165b68f0ebb30cda5ffaafa7c0f27617">toString</a>() const</td><td class="entry"><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html
index b496264a..063c3996 100644
--- a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html
+++ b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html
@@ -124,21 +124,20 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:ac81f994476d580a92686e7f84b726c2a" id="r_ac81f994476d580a92686e7f84b726c2a"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac81f994476d580a92686e7f84b726c2a">operator!=</a> (const <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">QSEGroup</a> &amp;other) const</td></tr>
 <tr class="memdesc:ac81f994476d580a92686e7f84b726c2a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Inequality operator for <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html" title="Struct representing a QSE group.">QSEGroup</a>.  <br /></td></tr>
 <tr class="separator:ac81f994476d580a92686e7f84b726c2a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a165b68f0ebb30cda5ffaafa7c0f27617" id="r_a165b68f0ebb30cda5ffaafa7c0f27617"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a165b68f0ebb30cda5ffaafa7c0f27617">toString</a> () const</td></tr>
+<tr class="separator:a165b68f0ebb30cda5ffaafa7c0f27617"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
 Public Attributes</h2></td></tr>
-<tr class="memitem:a3840e7faa591b7c3006b27ae3df9e21e" id="r_a3840e7faa591b7c3006b27ae3df9e21e"><td class="memItemLeft" align="right" valign="top">std::set&lt; size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3840e7faa591b7c3006b27ae3df9e21e">species_indices</a></td></tr>
-<tr class="memdesc:a3840e7faa591b7c3006b27ae3df9e21e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Indices of all species in this group.  <br /></td></tr>
-<tr class="separator:a3840e7faa591b7c3006b27ae3df9e21e"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:af8dc75a5e022510ec13da0be8c53aa06" id="r_af8dc75a5e022510ec13da0be8c53aa06"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af8dc75a5e022510ec13da0be8c53aa06">is_in_equilibrium</a> = false</td></tr>
 <tr class="memdesc:af8dc75a5e022510ec13da0be8c53aa06"><td class="mdescLeft">&#160;</td><td class="mdescRight">Flag set by flux analysis.  <br /></td></tr>
 <tr class="separator:af8dc75a5e022510ec13da0be8c53aa06"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab11be6e7afeef1ac9e4314ad8345e0b0" id="r_ab11be6e7afeef1ac9e4314ad8345e0b0"><td class="memItemLeft" align="right" valign="top">std::set&lt; size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab11be6e7afeef1ac9e4314ad8345e0b0">algebraic_indices</a></td></tr>
-<tr class="memdesc:ab11be6e7afeef1ac9e4314ad8345e0b0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Indices of algebraic species in this group.  <br /></td></tr>
-<tr class="separator:ab11be6e7afeef1ac9e4314ad8345e0b0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a997efc7ef138efb0e60e60790fcce681" id="r_a997efc7ef138efb0e60e60790fcce681"><td class="memItemLeft" align="right" valign="top">std::set&lt; size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a997efc7ef138efb0e60e60790fcce681">seed_indices</a></td></tr>
-<tr class="memdesc:a997efc7ef138efb0e60e60790fcce681"><td class="mdescLeft">&#160;</td><td class="mdescRight">Indices of dynamic species in this group.  <br /></td></tr>
-<tr class="separator:a997efc7ef138efb0e60e60790fcce681"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aff54b71dd17051bc991f747a328c7d8e" id="r_aff54b71dd17051bc991f747a328c7d8e"><td class="memItemLeft" align="right" valign="top">std::set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aff54b71dd17051bc991f747a328c7d8e">algebraic_species</a></td></tr>
+<tr class="memdesc:aff54b71dd17051bc991f747a328c7d8e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Algebraic species in this group.  <br /></td></tr>
+<tr class="separator:aff54b71dd17051bc991f747a328c7d8e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af2d7e09d940e0fb3ca24a4bc8ec01031" id="r_af2d7e09d940e0fb3ca24a4bc8ec01031"><td class="memItemLeft" align="right" valign="top">std::set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af2d7e09d940e0fb3ca24a4bc8ec01031">seed_species</a></td></tr>
+<tr class="memdesc:af2d7e09d940e0fb3ca24a4bc8ec01031"><td class="mdescLeft">&#160;</td><td class="mdescRight">Dynamic species in this group.  <br /></td></tr>
+<tr class="separator:af2d7e09d940e0fb3ca24a4bc8ec01031"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a66e6677638af72e4db75f5518dc867f9" id="r_a66e6677638af72e4db75f5518dc867f9"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a66e6677638af72e4db75f5518dc867f9">mean_timescale</a></td></tr>
 <tr class="memdesc:a66e6677638af72e4db75f5518dc867f9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mean timescale of the group.  <br /></td></tr>
 <tr class="separator:a66e6677638af72e4db75f5518dc867f9"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -249,22 +248,47 @@ Public Attributes</h2></td></tr>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>True if this group's mean timescale is greater than the other's. </dd></dl>
 
+</div>
+</div>
+<a id="a165b68f0ebb30cda5ffaafa7c0f27617" name="a165b68f0ebb30cda5ffaafa7c0f27617"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a165b68f0ebb30cda5ffaafa7c0f27617">&#9670;&#160;</a></span>toString()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::MultiscalePartitioningEngineView::QSEGroup::toString </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
 </div>
 </div>
 <h2 class="groupheader">Member Data Documentation</h2>
-<a id="ab11be6e7afeef1ac9e4314ad8345e0b0" name="ab11be6e7afeef1ac9e4314ad8345e0b0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab11be6e7afeef1ac9e4314ad8345e0b0">&#9670;&#160;</a></span>algebraic_indices</h2>
+<a id="aff54b71dd17051bc991f747a328c7d8e" name="aff54b71dd17051bc991f747a328c7d8e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aff54b71dd17051bc991f747a328c7d8e">&#9670;&#160;</a></span>algebraic_species</h2>
 
 <div class="memitem">
 <div class="memproto">
       <table class="memname">
         <tr>
-          <td class="memname">std::set&lt;size_t&gt; gridfire::MultiscalePartitioningEngineView::QSEGroup::algebraic_indices</td>
+          <td class="memname">std::set&lt;fourdst::atomic::Species&gt; gridfire::MultiscalePartitioningEngineView::QSEGroup::algebraic_species</td>
         </tr>
       </table>
 </div><div class="memdoc">
 
-<p>Indices of algebraic species in this group. </p>
+<p>Algebraic species in this group. </p>
 
 </div>
 </div>
@@ -300,35 +324,19 @@ Public Attributes</h2></td></tr>
 
 </div>
 </div>
-<a id="a997efc7ef138efb0e60e60790fcce681" name="a997efc7ef138efb0e60e60790fcce681"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a997efc7ef138efb0e60e60790fcce681">&#9670;&#160;</a></span>seed_indices</h2>
+<a id="af2d7e09d940e0fb3ca24a4bc8ec01031" name="af2d7e09d940e0fb3ca24a4bc8ec01031"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af2d7e09d940e0fb3ca24a4bc8ec01031">&#9670;&#160;</a></span>seed_species</h2>
 
 <div class="memitem">
 <div class="memproto">
       <table class="memname">
         <tr>
-          <td class="memname">std::set&lt;size_t&gt; gridfire::MultiscalePartitioningEngineView::QSEGroup::seed_indices</td>
+          <td class="memname">std::set&lt;fourdst::atomic::Species&gt; gridfire::MultiscalePartitioningEngineView::QSEGroup::seed_species</td>
         </tr>
       </table>
 </div><div class="memdoc">
 
-<p>Indices of dynamic species in this group. </p>
-
-</div>
-</div>
-<a id="a3840e7faa591b7c3006b27ae3df9e21e" name="a3840e7faa591b7c3006b27ae3df9e21e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3840e7faa591b7c3006b27ae3df9e21e">&#9670;&#160;</a></span>species_indices</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">std::set&lt;size_t&gt; gridfire::MultiscalePartitioningEngineView::QSEGroup::species_indices</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Indices of all species in this group. </p>
+<p>Dynamic species in this group. </p>
 
 </div>
 </div>
diff --git a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.js b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.js
index 07d313ff..1ecf6449 100644
--- a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.js
+++ b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.js
@@ -4,9 +4,9 @@ var structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group =
     [ "operator<", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06", null ],
     [ "operator==", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88", null ],
     [ "operator>", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a", null ],
-    [ "algebraic_indices", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ab11be6e7afeef1ac9e4314ad8345e0b0", null ],
+    [ "toString", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a165b68f0ebb30cda5ffaafa7c0f27617", null ],
+    [ "algebraic_species", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#aff54b71dd17051bc991f747a328c7d8e", null ],
     [ "is_in_equilibrium", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06", null ],
     [ "mean_timescale", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9", null ],
-    [ "seed_indices", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681", null ],
-    [ "species_indices", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e", null ]
+    [ "seed_species", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af2d7e09d940e0fb3ca24a4bc8ec01031", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/structgridfire_1_1_net_in.html b/docs/html/structgridfire_1_1_net_in.html
index 128598e5..0df51612 100644
--- a/docs/html/structgridfire_1_1_net_in.html
+++ b/docs/html/structgridfire_1_1_net_in.html
@@ -144,6 +144,9 @@ Public Attributes</h2></td></tr>
 
 <div class="memitem">
 <div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
       <table class="memname">
         <tr>
           <td class="memname">std::vector&lt; double &gt; gridfire::NetIn::MolarAbundance </td>
@@ -152,6 +155,11 @@ Public Attributes</h2></td></tr>
           <td> const</td>
         </tr>
       </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
 </div><div class="memdoc">
 
 </div>
diff --git a/docs/html/structgridfire_1_1_net_out-members.html b/docs/html/structgridfire_1_1_net_out-members.html
index 993a2796..3762e16f 100644
--- a/docs/html/structgridfire_1_1_net_out-members.html
+++ b/docs/html/structgridfire_1_1_net_out-members.html
@@ -106,6 +106,8 @@ $(function(){initNavTree('structgridfire_1_1_net_out.html',''); initResizable(tr
 <p>This is the complete list of members for <a class="el" href="structgridfire_1_1_net_out.html">gridfire::NetOut</a>, including all inherited members.</p>
 <table class="directory">
   <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a">composition</a></td><td class="entry"><a class="el" href="structgridfire_1_1_net_out.html">gridfire::NetOut</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_net_out.html#ad0bde670fb87bcab4de413e8284d624e">dEps_dRho</a></td><td class="entry"><a class="el" href="structgridfire_1_1_net_out.html">gridfire::NetOut</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_net_out.html#a210c0c395bc012c8ce6bef8cc6b683d6">dEps_dT</a></td><td class="entry"><a class="el" href="structgridfire_1_1_net_out.html">gridfire::NetOut</a></td><td class="entry"></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6">energy</a></td><td class="entry"><a class="el" href="structgridfire_1_1_net_out.html">gridfire::NetOut</a></td><td class="entry"></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6">num_steps</a></td><td class="entry"><a class="el" href="structgridfire_1_1_net_out.html">gridfire::NetOut</a></td><td class="entry"></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b">operator&lt;&lt;</a>(std::ostream &amp;os, const NetOut &amp;netOut)</td><td class="entry"><a class="el" href="structgridfire_1_1_net_out.html">gridfire::NetOut</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
diff --git a/docs/html/structgridfire_1_1_net_out.html b/docs/html/structgridfire_1_1_net_out.html
index 77f74949..24153a8b 100644
--- a/docs/html/structgridfire_1_1_net_out.html
+++ b/docs/html/structgridfire_1_1_net_out.html
@@ -120,6 +120,12 @@ Public Attributes</h2></td></tr>
 <tr class="memitem:a43d5a861708992c949f616aa2a035ec6" id="r_a43d5a861708992c949f616aa2a035ec6"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a43d5a861708992c949f616aa2a035ec6">energy</a></td></tr>
 <tr class="memdesc:a43d5a861708992c949f616aa2a035ec6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Energy in ergs after evaluation.  <br /></td></tr>
 <tr class="separator:a43d5a861708992c949f616aa2a035ec6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a210c0c395bc012c8ce6bef8cc6b683d6" id="r_a210c0c395bc012c8ce6bef8cc6b683d6"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a210c0c395bc012c8ce6bef8cc6b683d6">dEps_dT</a></td></tr>
+<tr class="memdesc:a210c0c395bc012c8ce6bef8cc6b683d6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Partial derivative of energy generation rate with respect to temperature.  <br /></td></tr>
+<tr class="separator:a210c0c395bc012c8ce6bef8cc6b683d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad0bde670fb87bcab4de413e8284d624e" id="r_ad0bde670fb87bcab4de413e8284d624e"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad0bde670fb87bcab4de413e8284d624e">dEps_dRho</a></td></tr>
+<tr class="memdesc:ad0bde670fb87bcab4de413e8284d624e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Partial derivative of energy generation rate with respect to density.  <br /></td></tr>
+<tr class="separator:ad0bde670fb87bcab4de413e8284d624e"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="friends" name="friends"></a>
 Friends</h2></td></tr>
@@ -171,6 +177,38 @@ Friends</h2></td></tr>
 
 <p>Composition of the network after evaluation. </p>
 
+</div>
+</div>
+<a id="ad0bde670fb87bcab4de413e8284d624e" name="ad0bde670fb87bcab4de413e8284d624e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad0bde670fb87bcab4de413e8284d624e">&#9670;&#160;</a></span>dEps_dRho</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::NetOut::dEps_dRho</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Partial derivative of energy generation rate with respect to density. </p>
+
+</div>
+</div>
+<a id="a210c0c395bc012c8ce6bef8cc6b683d6" name="a210c0c395bc012c8ce6bef8cc6b683d6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a210c0c395bc012c8ce6bef8cc6b683d6">&#9670;&#160;</a></span>dEps_dT</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::NetOut::dEps_dT</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Partial derivative of energy generation rate with respect to temperature. </p>
+
 </div>
 </div>
 <a id="a43d5a861708992c949f616aa2a035ec6" name="a43d5a861708992c949f616aa2a035ec6"></a>
diff --git a/docs/html/structgridfire_1_1_net_out.js b/docs/html/structgridfire_1_1_net_out.js
index dce8f67c..c3b93f6b 100644
--- a/docs/html/structgridfire_1_1_net_out.js
+++ b/docs/html/structgridfire_1_1_net_out.js
@@ -2,6 +2,8 @@ var structgridfire_1_1_net_out =
 [
     [ "operator<<", "structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b", null ],
     [ "composition", "structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a", null ],
+    [ "dEps_dRho", "structgridfire_1_1_net_out.html#ad0bde670fb87bcab4de413e8284d624e", null ],
+    [ "dEps_dT", "structgridfire_1_1_net_out.html#a210c0c395bc012c8ce6bef8cc6b683d6", null ],
     [ "energy", "structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6", null ],
     [ "num_steps", "structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/structgridfire_1_1_q_s_e_cache_key.html b/docs/html/structgridfire_1_1_q_s_e_cache_key.html
index 0a385ffd..5b6ccb9c 100644
--- a/docs/html/structgridfire_1_1_q_s_e_cache_key.html
+++ b/docs/html/structgridfire_1_1_q_s_e_cache_key.html
@@ -234,6 +234,9 @@ Public Attributes</h2></td></tr>
 
 <div class="memitem">
 <div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
       <table class="memname">
         <tr>
           <td class="memname">size_t gridfire::QSECacheKey::hash </td>
@@ -242,6 +245,11 @@ Public Attributes</h2></td></tr>
           <td> const</td>
         </tr>
       </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span></span>  </td>
+  </tr>
+</table>
 </div><div class="memdoc">
 
 <p>Computes the hash value for this key. </p>
@@ -289,9 +297,9 @@ Public Attributes</h2></td></tr>
       </table>
 </div><div class="memdoc">
 <b>Initial value:</b><div class="fragment"><div class="line">= {</div>
-<div class="line">            1e-3, </div>
-<div class="line">            1e-1, </div>
-<div class="line">            1e-3  </div>
+<div class="line">            1e-10, </div>
+<div class="line">            1e-10, </div>
+<div class="line">            1e-10  </div>
 <div class="line">        }</div>
 </div><!-- fragment -->
 </div>
diff --git a/docs/html/structgridfire_1_1_step_derivatives-members.html b/docs/html/structgridfire_1_1_step_derivatives-members.html
index a4a197ec..0e7771bc 100644
--- a/docs/html/structgridfire_1_1_step_derivatives-members.html
+++ b/docs/html/structgridfire_1_1_step_derivatives-members.html
@@ -105,8 +105,9 @@ $(function(){initNavTree('structgridfire_1_1_step_derivatives.html',''); initRes
 
 <p>This is the complete list of members for <a class="el" href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives&lt; T &gt;</a>, including all inherited members.</p>
 <table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d">dydt</a></td><td class="entry"><a class="el" href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives&lt; T &gt;</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_step_derivatives.html#a1ae99ac1684d8df519f8d6af413d2cb1">dydt</a></td><td class="entry"><a class="el" href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives&lt; T &gt;</a></td><td class="entry"></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008">nuclearEnergyGenerationRate</a></td><td class="entry"><a class="el" href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives&lt; T &gt;</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1_step_derivatives.html#a26deeb236e77eddb0119ad368a5d8f1c">StepDerivatives</a>()</td><td class="entry"><a class="el" href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
 </table></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
diff --git a/docs/html/structgridfire_1_1_step_derivatives.html b/docs/html/structgridfire_1_1_step_derivatives.html
index 3131381e..698c045f 100644
--- a/docs/html/structgridfire_1_1_step_derivatives.html
+++ b/docs/html/structgridfire_1_1_step_derivatives.html
@@ -100,6 +100,7 @@ $(function(){initNavTree('structgridfire_1_1_step_derivatives.html',''); initRes
 
 <div class="header">
   <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
 <a href="#pub-attribs">Public Attributes</a> &#124;
 <a href="structgridfire_1_1_step_derivatives-members.html">List of all members</a>  </div>
   <div class="headertitle"><div class="title">gridfire::StepDerivatives&lt; T &gt; Struct Template Reference</div></div>
@@ -111,11 +112,16 @@ $(function(){initNavTree('structgridfire_1_1_step_derivatives.html',''); initRes
 
 <p><code>#include &lt;engine_abstract.h&gt;</code></p>
 <table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a26deeb236e77eddb0119ad368a5d8f1c" id="r_a26deeb236e77eddb0119ad368a5d8f1c"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a26deeb236e77eddb0119ad368a5d8f1c">StepDerivatives</a> ()</td></tr>
+<tr class="separator:a26deeb236e77eddb0119ad368a5d8f1c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
 Public Attributes</h2></td></tr>
-<tr class="memitem:ae0de268b86c2404379409c4feae0b34d" id="r_ae0de268b86c2404379409c4feae0b34d"><td class="memItemLeft" align="right" valign="top">std::vector&lt; T &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae0de268b86c2404379409c4feae0b34d">dydt</a></td></tr>
-<tr class="memdesc:ae0de268b86c2404379409c4feae0b34d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Derivatives of abundances (dY/dt for each species).  <br /></td></tr>
-<tr class="separator:ae0de268b86c2404379409c4feae0b34d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1ae99ac1684d8df519f8d6af413d2cb1" id="r_a1ae99ac1684d8df519f8d6af413d2cb1"><td class="memItemLeft" align="right" valign="top">std::map&lt; fourdst::atomic::Species, T &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1ae99ac1684d8df519f8d6af413d2cb1">dydt</a></td></tr>
+<tr class="memdesc:a1ae99ac1684d8df519f8d6af413d2cb1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Derivatives of abundances (dY/dt for each species).  <br /></td></tr>
+<tr class="separator:a1ae99ac1684d8df519f8d6af413d2cb1"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:ab4aeb41be952c7b5844e1ee81fef9008" id="r_ab4aeb41be952c7b5844e1ee81fef9008"><td class="memItemLeft" align="right" valign="top">T&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab4aeb41be952c7b5844e1ee81fef9008">nuclearEnergyGenerationRate</a> = T(0.0)</td></tr>
 <tr class="memdesc:ab4aeb41be952c7b5844e1ee81fef9008"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specific energy generation rate (e.g., erg/g/s).  <br /></td></tr>
 <tr class="separator:ab4aeb41be952c7b5844e1ee81fef9008"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -130,17 +136,45 @@ struct gridfire::StepDerivatives&lt; T &gt;</div><p>Structure holding derivative
   </dd>
 </dl>
 <p>This struct is used to return both the time derivatives of all species abundances and the specific nuclear energy generation rate for a single network evaluation.</p>
-<p>Example usage: </p><div class="fragment"><div class="line"><a class="code hl_struct" href="structgridfire_1_1_step_derivatives.html">StepDerivatives&lt;double&gt;</a> result = engine.calculateRHSAndEnergy(Y, T9, rho);</div>
-<div class="line"><span class="keywordflow">for</span> (<span class="keywordtype">double</span> dydt_i : result.<a class="code hl_variable" href="#ae0de268b86c2404379409c4feae0b34d">dydt</a>) {</div>
+<p>Example usage: </p><div class="fragment"><div class="line"><a class="code hl_function" href="#a26deeb236e77eddb0119ad368a5d8f1c">StepDerivatives&lt;double&gt;</a> result = engine.calculateRHSAndEnergy(Y, T9, rho);</div>
+<div class="line"><span class="keywordflow">for</span> (<span class="keywordtype">double</span> dydt_i : result.<a class="code hl_variable" href="#a1ae99ac1684d8df519f8d6af413d2cb1">dydt</a>) {</div>
 <div class="line">    <span class="comment">// Use derivative</span></div>
 <div class="line">}</div>
 <div class="line"><span class="keywordtype">double</span> energyRate = result.<a class="code hl_variable" href="#ab4aeb41be952c7b5844e1ee81fef9008">nuclearEnergyGenerationRate</a>;</div>
-<div class="ttc" id="astructgridfire_1_1_step_derivatives_html"><div class="ttname"><a href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives</a></div><div class="ttdoc">Structure holding derivatives and energy generation for a network step.</div><div class="ttdef"><b>Definition</b> engine_abstract.h:60</div></div>
+<div class="ttc" id="astructgridfire_1_1_step_derivatives_html_a1ae99ac1684d8df519f8d6af413d2cb1"><div class="ttname"><a href="#a1ae99ac1684d8df519f8d6af413d2cb1">gridfire::StepDerivatives::dydt</a></div><div class="ttdeci">std::map&lt; fourdst::atomic::Species, T &gt; dydt</div><div class="ttdoc">Derivatives of abundances (dY/dt for each species).</div><div class="ttdef"><b>Definition</b> engine_abstract.h:61</div></div>
+<div class="ttc" id="astructgridfire_1_1_step_derivatives_html_a26deeb236e77eddb0119ad368a5d8f1c"><div class="ttname"><a href="#a26deeb236e77eddb0119ad368a5d8f1c">gridfire::StepDerivatives::StepDerivatives</a></div><div class="ttdeci">StepDerivatives()</div><div class="ttdef"><b>Definition</b> engine_abstract.h:64</div></div>
 <div class="ttc" id="astructgridfire_1_1_step_derivatives_html_ab4aeb41be952c7b5844e1ee81fef9008"><div class="ttname"><a href="#ab4aeb41be952c7b5844e1ee81fef9008">gridfire::StepDerivatives::nuclearEnergyGenerationRate</a></div><div class="ttdeci">T nuclearEnergyGenerationRate</div><div class="ttdoc">Specific energy generation rate (e.g., erg/g/s).</div><div class="ttdef"><b>Definition</b> engine_abstract.h:62</div></div>
-<div class="ttc" id="astructgridfire_1_1_step_derivatives_html_ae0de268b86c2404379409c4feae0b34d"><div class="ttname"><a href="#ae0de268b86c2404379409c4feae0b34d">gridfire::StepDerivatives::dydt</a></div><div class="ttdeci">std::vector&lt; T &gt; dydt</div><div class="ttdoc">Derivatives of abundances (dY/dt for each species).</div><div class="ttdef"><b>Definition</b> engine_abstract.h:61</div></div>
-</div><!-- fragment --> </div><h2 class="groupheader">Member Data Documentation</h2>
-<a id="ae0de268b86c2404379409c4feae0b34d" name="ae0de268b86c2404379409c4feae0b34d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae0de268b86c2404379409c4feae0b34d">&#9670;&#160;</a></span>dydt</h2>
+</div><!-- fragment --> </div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a26deeb236e77eddb0119ad368a5d8f1c" name="a26deeb236e77eddb0119ad368a5d8f1c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a26deeb236e77eddb0119ad368a5d8f1c">&#9670;&#160;</a></span>StepDerivatives()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;IsArithmeticOrAD T&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives</a>&lt; T &gt;::StepDerivatives </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a1ae99ac1684d8df519f8d6af413d2cb1" name="a1ae99ac1684d8df519f8d6af413d2cb1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1ae99ac1684d8df519f8d6af413d2cb1">&#9670;&#160;</a></span>dydt</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -148,7 +182,7 @@ struct gridfire::StepDerivatives&lt; T &gt;</div><p>Structure holding derivative
 template&lt;IsArithmeticOrAD T&gt; </div>
       <table class="memname">
         <tr>
-          <td class="memname">std::vector&lt;T&gt; <a class="el" href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives</a>&lt; T &gt;::dydt</td>
+          <td class="memname">std::map&lt;fourdst::atomic::Species, T&gt; <a class="el" href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives</a>&lt; T &gt;::dydt</td>
         </tr>
       </table>
 </div><div class="memdoc">
diff --git a/docs/html/structgridfire_1_1_step_derivatives.js b/docs/html/structgridfire_1_1_step_derivatives.js
index d12a4294..b6a42e59 100644
--- a/docs/html/structgridfire_1_1_step_derivatives.js
+++ b/docs/html/structgridfire_1_1_step_derivatives.js
@@ -1,5 +1,6 @@
 var structgridfire_1_1_step_derivatives =
 [
-    [ "dydt", "structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d", null ],
+    [ "StepDerivatives", "structgridfire_1_1_step_derivatives.html#a26deeb236e77eddb0119ad368a5d8f1c", null ],
+    [ "dydt", "structgridfire_1_1_step_derivatives.html#a1ae99ac1684d8df519f8d6af413d2cb1", null ],
     [ "nuclearEnergyGenerationRate", "structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/structgridfire_1_1expectations_1_1_engine_error-members.html b/docs/html/structgridfire_1_1expectations_1_1_engine_error-members.html
index d855d2fc..0e66abc2 100644
--- a/docs/html/structgridfire_1_1expectations_1_1_engine_error-members.html
+++ b/docs/html/structgridfire_1_1expectations_1_1_engine_error-members.html
@@ -105,7 +105,7 @@ $(function(){initNavTree('structgridfire_1_1expectations_1_1_engine_error.html',
 
 <p>This is the complete list of members for <a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html">gridfire::expectations::EngineError</a>, including all inherited members.</p>
 <table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa">EngineError</a>(const std::string &amp;message, const EngineErrorTypes type)</td><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html">gridfire::expectations::EngineError</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#a574a18b105ee285f516db535e1e3bdfd">EngineError</a>(std::string message, const EngineErrorTypes type)</td><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html">gridfire::expectations::EngineError</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc">m_message</a></td><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html">gridfire::expectations::EngineError</a></td><td class="entry"></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7">operator&lt;&lt;</a>(std::ostream &amp;os, const EngineError &amp;e)</td><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html">gridfire::expectations::EngineError</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897">type</a></td><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html">gridfire::expectations::EngineError</a></td><td class="entry"></td></tr>
diff --git a/docs/html/structgridfire_1_1expectations_1_1_engine_error.html b/docs/html/structgridfire_1_1expectations_1_1_engine_error.html
index 77fd2749..a7be4427 100644
--- a/docs/html/structgridfire_1_1expectations_1_1_engine_error.html
+++ b/docs/html/structgridfire_1_1expectations_1_1_engine_error.html
@@ -122,8 +122,8 @@ Inheritance diagram for gridfire::expectations::EngineError:</div>
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
 Public Member Functions</h2></td></tr>
-<tr class="memitem:afb827165fd15ba94c50c72b28735fdaa" id="r_afb827165fd15ba94c50c72b28735fdaa"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afb827165fd15ba94c50c72b28735fdaa">EngineError</a> (const std::string &amp;message, const <a class="el" href="namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87c">EngineErrorTypes</a> <a class="el" href="#ac5fcafed01de529e03afa055d18bd897">type</a>)</td></tr>
-<tr class="separator:afb827165fd15ba94c50c72b28735fdaa"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a574a18b105ee285f516db535e1e3bdfd" id="r_a574a18b105ee285f516db535e1e3bdfd"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a574a18b105ee285f516db535e1e3bdfd">EngineError</a> (std::string message, const <a class="el" href="namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87c">EngineErrorTypes</a> <a class="el" href="#ac5fcafed01de529e03afa055d18bd897">type</a>)</td></tr>
+<tr class="separator:a574a18b105ee285f516db535e1e3bdfd"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a018c845e244869df264b1b073de39897" id="r_a018c845e244869df264b1b073de39897"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a018c845e244869df264b1b073de39897">~EngineError</a> ()=default</td></tr>
 <tr class="separator:a018c845e244869df264b1b073de39897"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
@@ -140,8 +140,8 @@ Friends</h2></td></tr>
 <tr class="separator:a042b9486812f1cf963061a2497deabb7"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
-<a id="afb827165fd15ba94c50c72b28735fdaa" name="afb827165fd15ba94c50c72b28735fdaa"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afb827165fd15ba94c50c72b28735fdaa">&#9670;&#160;</a></span>EngineError()</h2>
+<a id="a574a18b105ee285f516db535e1e3bdfd" name="a574a18b105ee285f516db535e1e3bdfd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a574a18b105ee285f516db535e1e3bdfd">&#9670;&#160;</a></span>EngineError()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -152,7 +152,7 @@ Friends</h2></td></tr>
         <tr>
           <td class="memname">gridfire::expectations::EngineError::EngineError </td>
           <td>(</td>
-          <td class="paramtype">const std::string &amp;</td>          <td class="paramname"><span class="paramname"><em>message</em></span>, </td>
+          <td class="paramtype">std::string</td>          <td class="paramname"><span class="paramname"><em>message</em></span>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
diff --git a/docs/html/structgridfire_1_1expectations_1_1_engine_error.js b/docs/html/structgridfire_1_1expectations_1_1_engine_error.js
index 7b90044f..94a35359 100644
--- a/docs/html/structgridfire_1_1expectations_1_1_engine_error.js
+++ b/docs/html/structgridfire_1_1expectations_1_1_engine_error.js
@@ -1,6 +1,6 @@
 var structgridfire_1_1expectations_1_1_engine_error =
 [
-    [ "EngineError", "structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa", null ],
+    [ "EngineError", "structgridfire_1_1expectations_1_1_engine_error.html#a574a18b105ee285f516db535e1e3bdfd", null ],
     [ "~EngineError", "structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897", null ],
     [ "operator<<", "structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7", null ],
     [ "m_message", "structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc", null ],
diff --git a/docs/html/structgridfire_1_1expectations_1_1_engine_index_error-members.html b/docs/html/structgridfire_1_1expectations_1_1_engine_index_error-members.html
index b63d00f8..028a5b69 100644
--- a/docs/html/structgridfire_1_1expectations_1_1_engine_index_error-members.html
+++ b/docs/html/structgridfire_1_1expectations_1_1_engine_index_error-members.html
@@ -105,7 +105,7 @@ $(function(){initNavTree('structgridfire_1_1expectations_1_1_engine_index_error.
 
 <p>This is the complete list of members for <a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html">gridfire::expectations::EngineIndexError</a>, including all inherited members.</p>
 <table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa">EngineError</a>(const std::string &amp;message, const EngineErrorTypes type)</td><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html">gridfire::expectations::EngineError</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#a574a18b105ee285f516db535e1e3bdfd">EngineError</a>(std::string message, const EngineErrorTypes type)</td><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html">gridfire::expectations::EngineError</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html#ab44bba2a197d43319e65cd200cd347b0">EngineIndexError</a>(const int index)</td><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html">gridfire::expectations::EngineIndexError</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e">m_index</a></td><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html">gridfire::expectations::EngineIndexError</a></td><td class="entry"></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc">m_message</a></td><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html">gridfire::expectations::EngineError</a></td><td class="entry"></td></tr>
diff --git a/docs/html/structgridfire_1_1expectations_1_1_engine_index_error.html b/docs/html/structgridfire_1_1expectations_1_1_engine_index_error.html
index d2b4a9ab..6035d718 100644
--- a/docs/html/structgridfire_1_1expectations_1_1_engine_index_error.html
+++ b/docs/html/structgridfire_1_1expectations_1_1_engine_index_error.html
@@ -124,8 +124,8 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:ab44bba2a197d43319e65cd200cd347b0" id="r_ab44bba2a197d43319e65cd200cd347b0"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab44bba2a197d43319e65cd200cd347b0">EngineIndexError</a> (const int index)</td></tr>
 <tr class="separator:ab44bba2a197d43319e65cd200cd347b0"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="inherit_header pub_methods_structgridfire_1_1expectations_1_1_engine_error"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_structgridfire_1_1expectations_1_1_engine_error')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html">gridfire::expectations::EngineError</a></td></tr>
-<tr class="memitem:afb827165fd15ba94c50c72b28735fdaa inherit pub_methods_structgridfire_1_1expectations_1_1_engine_error" id="r_afb827165fd15ba94c50c72b28735fdaa"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa">EngineError</a> (const std::string &amp;message, const <a class="el" href="namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87c">EngineErrorTypes</a> <a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897">type</a>)</td></tr>
-<tr class="separator:afb827165fd15ba94c50c72b28735fdaa inherit pub_methods_structgridfire_1_1expectations_1_1_engine_error"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a574a18b105ee285f516db535e1e3bdfd inherit pub_methods_structgridfire_1_1expectations_1_1_engine_error" id="r_a574a18b105ee285f516db535e1e3bdfd"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#a574a18b105ee285f516db535e1e3bdfd">EngineError</a> (std::string message, const <a class="el" href="namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87c">EngineErrorTypes</a> <a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897">type</a>)</td></tr>
+<tr class="separator:a574a18b105ee285f516db535e1e3bdfd inherit pub_methods_structgridfire_1_1expectations_1_1_engine_error"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a018c845e244869df264b1b073de39897 inherit pub_methods_structgridfire_1_1expectations_1_1_engine_error" id="r_a018c845e244869df264b1b073de39897"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897">~EngineError</a> ()=default</td></tr>
 <tr class="separator:a018c845e244869df264b1b073de39897 inherit pub_methods_structgridfire_1_1expectations_1_1_engine_error"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
diff --git a/docs/html/structgridfire_1_1expectations_1_1_stale_engine_error-members.html b/docs/html/structgridfire_1_1expectations_1_1_stale_engine_error-members.html
index 24f75471..6176860a 100644
--- a/docs/html/structgridfire_1_1expectations_1_1_stale_engine_error-members.html
+++ b/docs/html/structgridfire_1_1expectations_1_1_stale_engine_error-members.html
@@ -105,7 +105,7 @@ $(function(){initNavTree('structgridfire_1_1expectations_1_1_stale_engine_error.
 
 <p>This is the complete list of members for <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">gridfire::expectations::StaleEngineError</a>, including all inherited members.</p>
 <table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa">EngineError</a>(const std::string &amp;message, const EngineErrorTypes type)</td><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html">gridfire::expectations::EngineError</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#a574a18b105ee285f516db535e1e3bdfd">EngineError</a>(std::string message, const EngineErrorTypes type)</td><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html">gridfire::expectations::EngineError</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc">m_message</a></td><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html">gridfire::expectations::EngineError</a></td><td class="entry"></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html#ad8ba0f62a2da0d93aba429181e7e6f84">operator std::string</a>() const</td><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">gridfire::expectations::StaleEngineError</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
   <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10">StaleEngineError</a>(const StaleEngineErrorTypes sType)</td><td class="entry"><a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">gridfire::expectations::StaleEngineError</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
diff --git a/docs/html/structgridfire_1_1expectations_1_1_stale_engine_error.html b/docs/html/structgridfire_1_1expectations_1_1_stale_engine_error.html
index 6bc76093..537b495f 100644
--- a/docs/html/structgridfire_1_1expectations_1_1_stale_engine_error.html
+++ b/docs/html/structgridfire_1_1expectations_1_1_stale_engine_error.html
@@ -125,8 +125,8 @@ Public Member Functions</h2></td></tr>
 <tr class="memitem:ad8ba0f62a2da0d93aba429181e7e6f84" id="r_ad8ba0f62a2da0d93aba429181e7e6f84"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad8ba0f62a2da0d93aba429181e7e6f84">operator std::string</a> () const</td></tr>
 <tr class="separator:ad8ba0f62a2da0d93aba429181e7e6f84"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="inherit_header pub_methods_structgridfire_1_1expectations_1_1_engine_error"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_structgridfire_1_1expectations_1_1_engine_error')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html">gridfire::expectations::EngineError</a></td></tr>
-<tr class="memitem:afb827165fd15ba94c50c72b28735fdaa inherit pub_methods_structgridfire_1_1expectations_1_1_engine_error" id="r_afb827165fd15ba94c50c72b28735fdaa"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa">EngineError</a> (const std::string &amp;message, const <a class="el" href="namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87c">EngineErrorTypes</a> <a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897">type</a>)</td></tr>
-<tr class="separator:afb827165fd15ba94c50c72b28735fdaa inherit pub_methods_structgridfire_1_1expectations_1_1_engine_error"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a574a18b105ee285f516db535e1e3bdfd inherit pub_methods_structgridfire_1_1expectations_1_1_engine_error" id="r_a574a18b105ee285f516db535e1e3bdfd"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#a574a18b105ee285f516db535e1e3bdfd">EngineError</a> (std::string message, const <a class="el" href="namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87c">EngineErrorTypes</a> <a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897">type</a>)</td></tr>
+<tr class="separator:a574a18b105ee285f516db535e1e3bdfd inherit pub_methods_structgridfire_1_1expectations_1_1_engine_error"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a018c845e244869df264b1b073de39897 inherit pub_methods_structgridfire_1_1expectations_1_1_engine_error" id="r_a018c845e244869df264b1b073de39897"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897">~EngineError</a> ()=default</td></tr>
 <tr class="separator:a018c845e244869df264b1b073de39897 inherit pub_methods_structgridfire_1_1expectations_1_1_engine_error"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info-members.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info-members.html
new file mode 100644
index 00000000..6a0e6dfd
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info-members.html
@@ -0,0 +1,121 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::rates::weak::BoundsErrorInfo Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html">gridfire::rates::weak::BoundsErrorInfo</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#afb2af3df6ec5ea439b5ea55571975391">axis</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html">gridfire::rates::weak::BoundsErrorInfo</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a6371b8f8c45a9b069b19dd968ff81b28">axisMaxValue</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html">gridfire::rates::weak::BoundsErrorInfo</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a07dfb669f73b029a71eb59cbbed69f42">axisMinValue</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html">gridfire::rates::weak::BoundsErrorInfo</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a3eb0be2063f7333994a026a569ae5568">queryValue</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html">gridfire::rates::weak::BoundsErrorInfo</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html
new file mode 100644
index 00000000..36042dfe
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html
@@ -0,0 +1,209 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::rates::weak::BoundsErrorInfo Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::BoundsErrorInfo Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Detailed bounds information for a BOUNDS_ERROR.  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;weak_types.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:afb2af3df6ec5ea439b5ea55571975391" id="r_afb2af3df6ec5ea439b5ea55571975391"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">TableAxes</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afb2af3df6ec5ea439b5ea55571975391">axis</a></td></tr>
+<tr class="memdesc:afb2af3df6ec5ea439b5ea55571975391"><td class="mdescLeft">&#160;</td><td class="mdescRight">Axis on which the error occurred.  <br /></td></tr>
+<tr class="separator:afb2af3df6ec5ea439b5ea55571975391"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a07dfb669f73b029a71eb59cbbed69f42" id="r_a07dfb669f73b029a71eb59cbbed69f42"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a07dfb669f73b029a71eb59cbbed69f42">axisMinValue</a></td></tr>
+<tr class="memdesc:a07dfb669f73b029a71eb59cbbed69f42"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum tabulated value on the axis.  <br /></td></tr>
+<tr class="separator:a07dfb669f73b029a71eb59cbbed69f42"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6371b8f8c45a9b069b19dd968ff81b28" id="r_a6371b8f8c45a9b069b19dd968ff81b28"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6371b8f8c45a9b069b19dd968ff81b28">axisMaxValue</a></td></tr>
+<tr class="memdesc:a6371b8f8c45a9b069b19dd968ff81b28"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum tabulated value on the axis.  <br /></td></tr>
+<tr class="separator:a6371b8f8c45a9b069b19dd968ff81b28"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3eb0be2063f7333994a026a569ae5568" id="r_a3eb0be2063f7333994a026a569ae5568"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3eb0be2063f7333994a026a569ae5568">queryValue</a></td></tr>
+<tr class="memdesc:a3eb0be2063f7333994a026a569ae5568"><td class="mdescLeft">&#160;</td><td class="mdescRight">Requested value.  <br /></td></tr>
+<tr class="separator:a3eb0be2063f7333994a026a569ae5568"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Detailed bounds information for a BOUNDS_ERROR. </p>
+</div><h2 class="groupheader">Member Data Documentation</h2>
+<a id="afb2af3df6ec5ea439b5ea55571975391" name="afb2af3df6ec5ea439b5ea55571975391"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afb2af3df6ec5ea439b5ea55571975391">&#9670;&#160;</a></span>axis</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">TableAxes</a> gridfire::rates::weak::BoundsErrorInfo::axis</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Axis on which the error occurred. </p>
+
+</div>
+</div>
+<a id="a6371b8f8c45a9b069b19dd968ff81b28" name="a6371b8f8c45a9b069b19dd968ff81b28"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6371b8f8c45a9b069b19dd968ff81b28">&#9670;&#160;</a></span>axisMaxValue</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::BoundsErrorInfo::axisMaxValue</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Maximum tabulated value on the axis. </p>
+
+</div>
+</div>
+<a id="a07dfb669f73b029a71eb59cbbed69f42" name="a07dfb669f73b029a71eb59cbbed69f42"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a07dfb669f73b029a71eb59cbbed69f42">&#9670;&#160;</a></span>axisMinValue</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::BoundsErrorInfo::axisMinValue</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Minimum tabulated value on the axis. </p>
+
+</div>
+</div>
+<a id="a3eb0be2063f7333994a026a569ae5568" name="a3eb0be2063f7333994a026a569ae5568"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3eb0be2063f7333994a026a569ae5568">&#9670;&#160;</a></span>queryValue</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::BoundsErrorInfo::queryValue</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Requested value. </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak__types_8h.html">weak_types.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates.html">rates</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">weak</a></li><li class="navelem"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html">BoundsErrorInfo</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.js b/docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.js
new file mode 100644
index 00000000..b6f9b8c1
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.js
@@ -0,0 +1,7 @@
+var structgridfire_1_1rates_1_1weak_1_1_bounds_error_info =
+[
+    [ "axis", "structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#afb2af3df6ec5ea439b5ea55571975391", null ],
+    [ "axisMaxValue", "structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a6371b8f8c45a9b069b19dd968ff81b28", null ],
+    [ "axisMinValue", "structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a07dfb669f73b029a71eb59cbbed69f42", null ],
+    [ "queryValue", "structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#a3eb0be2063f7333994a026a569ae5568", null ]
+];
\ No newline at end of file
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error-members.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error-members.html
new file mode 100644
index 00000000..f72c67a8
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error-members.html
@@ -0,0 +1,119 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::rates::weak::InterpolationError Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html">gridfire::rates::weak::InterpolationError</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a1541a5280bd1b3f90bc62d7c0e1f80a1">boundsErrorInfo</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html">gridfire::rates::weak::InterpolationError</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a086720ca534bc4c63d9341995e2f87bd">type</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html">gridfire::rates::weak::InterpolationError</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html
new file mode 100644
index 00000000..f1ab0a94
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html
@@ -0,0 +1,169 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::rates::weak::InterpolationError Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::InterpolationError Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Interpolation error with optional per-axis bounds details.  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;weak_types.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a086720ca534bc4c63d9341995e2f87bd" id="r_a086720ca534bc4c63d9341995e2f87bd"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4">InterpolationErrorType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a086720ca534bc4c63d9341995e2f87bd">type</a></td></tr>
+<tr class="memdesc:a086720ca534bc4c63d9341995e2f87bd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Error category.  <br /></td></tr>
+<tr class="separator:a086720ca534bc4c63d9341995e2f87bd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1541a5280bd1b3f90bc62d7c0e1f80a1" id="r_a1541a5280bd1b3f90bc62d7c0e1f80a1"><td class="memItemLeft" align="right" valign="top">std::optional&lt; std::unordered_map&lt; <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">TableAxes</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html">BoundsErrorInfo</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1541a5280bd1b3f90bc62d7c0e1f80a1">boundsErrorInfo</a> = std::nullopt</td></tr>
+<tr class="separator:a1541a5280bd1b3f90bc62d7c0e1f80a1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Interpolation error with optional per-axis bounds details. </p>
+<p>For BOUNDS_ERROR, boundsErrorInfo may contain an entry per offending axis. </p>
+</div><h2 class="groupheader">Member Data Documentation</h2>
+<a id="a1541a5280bd1b3f90bc62d7c0e1f80a1" name="a1541a5280bd1b3f90bc62d7c0e1f80a1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1541a5280bd1b3f90bc62d7c0e1f80a1">&#9670;&#160;</a></span>boundsErrorInfo</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::optional&lt;std::unordered_map&lt;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">TableAxes</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html">BoundsErrorInfo</a>&gt; &gt; gridfire::rates::weak::InterpolationError::boundsErrorInfo = std::nullopt</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a086720ca534bc4c63d9341995e2f87bd" name="a086720ca534bc4c63d9341995e2f87bd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a086720ca534bc4c63d9341995e2f87bd">&#9670;&#160;</a></span>type</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4">InterpolationErrorType</a> gridfire::rates::weak::InterpolationError::type</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Error category. </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak__types_8h.html">weak_types.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates.html">rates</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">weak</a></li><li class="navelem"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html">InterpolationError</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error.js b/docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error.js
new file mode 100644
index 00000000..77c37dc2
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error.js
@@ -0,0 +1,5 @@
+var structgridfire_1_1rates_1_1weak_1_1_interpolation_error =
+[
+    [ "boundsErrorInfo", "structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a1541a5280bd1b3f90bc62d7c0e1f80a1", null ],
+    [ "type", "structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#a086720ca534bc4c63d9341995e2f87bd", null ]
+];
\ No newline at end of file
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid-members.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid-members.html
new file mode 100644
index 00000000..2e979679
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid-members.html
@@ -0,0 +1,121 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::rates::weak::IsotopeGrid Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html">gridfire::rates::weak::IsotopeGrid</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#ad0df5ef84e3a78d881838a3bb014db83">data</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html">gridfire::rates::weak::IsotopeGrid</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a82cc218ce48dcb835d07422dad927a5a">mue_axis</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html">gridfire::rates::weak::IsotopeGrid</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a30362f5bb497ae74cf6a10fd701273a0">rhoYe_axis</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html">gridfire::rates::weak::IsotopeGrid</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a99da523669d85aa0a628d35a077d541c">t9_axis</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html">gridfire::rates::weak::IsotopeGrid</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html
new file mode 100644
index 00000000..c8ca1ab2
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html
@@ -0,0 +1,210 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::rates::weak::IsotopeGrid Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::IsotopeGrid Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Regular 3D grid and payloads for a single isotope (A,Z).  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;weak_types.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a99da523669d85aa0a628d35a077d541c" id="r_a99da523669d85aa0a628d35a077d541c"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a99da523669d85aa0a628d35a077d541c">t9_axis</a></td></tr>
+<tr class="memdesc:a99da523669d85aa0a628d35a077d541c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Unique sorted T9 grid.  <br /></td></tr>
+<tr class="separator:a99da523669d85aa0a628d35a077d541c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a30362f5bb497ae74cf6a10fd701273a0" id="r_a30362f5bb497ae74cf6a10fd701273a0"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a30362f5bb497ae74cf6a10fd701273a0">rhoYe_axis</a></td></tr>
+<tr class="memdesc:a30362f5bb497ae74cf6a10fd701273a0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Unique sorted log10(rho*Ye) grid.  <br /></td></tr>
+<tr class="separator:a30362f5bb497ae74cf6a10fd701273a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a82cc218ce48dcb835d07422dad927a5a" id="r_a82cc218ce48dcb835d07422dad927a5a"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a82cc218ce48dcb835d07422dad927a5a">mue_axis</a></td></tr>
+<tr class="memdesc:a82cc218ce48dcb835d07422dad927a5a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Unique sorted mu_e grid.  <br /></td></tr>
+<tr class="separator:a82cc218ce48dcb835d07422dad927a5a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad0df5ef84e3a78d881838a3bb014db83" id="r_ad0df5ef84e3a78d881838a3bb014db83"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">WeakRatePayload</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad0df5ef84e3a78d881838a3bb014db83">data</a></td></tr>
+<tr class="memdesc:ad0df5ef84e3a78d881838a3bb014db83"><td class="mdescLeft">&#160;</td><td class="mdescRight">Payloads at each grid node.  <br /></td></tr>
+<tr class="separator:ad0df5ef84e3a78d881838a3bb014db83"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Regular 3D grid and payloads for a single isotope (A,Z). </p>
+<p>Axes are monotonically increasing per dimension. Data vector is laid out in row-major order with index computed as: index = ((i_t9 * rhoYe_axis.size() + j_rhoYe) * mue_axis.size()) + k_mue </p>
+</div><h2 class="groupheader">Member Data Documentation</h2>
+<a id="ad0df5ef84e3a78d881838a3bb014db83" name="ad0df5ef84e3a78d881838a3bb014db83"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad0df5ef84e3a78d881838a3bb014db83">&#9670;&#160;</a></span>data</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">WeakRatePayload</a>&gt; gridfire::rates::weak::IsotopeGrid::data</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Payloads at each grid node. </p>
+
+</div>
+</div>
+<a id="a82cc218ce48dcb835d07422dad927a5a" name="a82cc218ce48dcb835d07422dad927a5a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a82cc218ce48dcb835d07422dad927a5a">&#9670;&#160;</a></span>mue_axis</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;double&gt; gridfire::rates::weak::IsotopeGrid::mue_axis</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Unique sorted mu_e grid. </p>
+
+</div>
+</div>
+<a id="a30362f5bb497ae74cf6a10fd701273a0" name="a30362f5bb497ae74cf6a10fd701273a0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a30362f5bb497ae74cf6a10fd701273a0">&#9670;&#160;</a></span>rhoYe_axis</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;double&gt; gridfire::rates::weak::IsotopeGrid::rhoYe_axis</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Unique sorted log10(rho*Ye) grid. </p>
+
+</div>
+</div>
+<a id="a99da523669d85aa0a628d35a077d541c" name="a99da523669d85aa0a628d35a077d541c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a99da523669d85aa0a628d35a077d541c">&#9670;&#160;</a></span>t9_axis</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;double&gt; gridfire::rates::weak::IsotopeGrid::t9_axis</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Unique sorted T9 grid. </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak__types_8h.html">weak_types.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates.html">rates</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">weak</a></li><li class="navelem"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html">IsotopeGrid</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid.js b/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid.js
new file mode 100644
index 00000000..c348e9ff
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid.js
@@ -0,0 +1,7 @@
+var structgridfire_1_1rates_1_1weak_1_1_isotope_grid =
+[
+    [ "data", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#ad0df5ef84e3a78d881838a3bb014db83", null ],
+    [ "mue_axis", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a82cc218ce48dcb835d07422dad927a5a", null ],
+    [ "rhoYe_axis", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a30362f5bb497ae74cf6a10fd701273a0", null ],
+    [ "t9_axis", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a99da523669d85aa0a628d35a077d541c", null ]
+];
\ No newline at end of file
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row-members.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row-members.html
new file mode 100644
index 00000000..87cf330e
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row-members.html
@@ -0,0 +1,128 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::rates::weak::RateDataRow Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">gridfire::rates::weak::RateDataRow</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#aee9ee73218397780a2a7708c29779c73">A</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">gridfire::rates::weak::RateDataRow</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a9d4db2970fc7f525824f6666198b3d56">log_antineutrino_loss_bd</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">gridfire::rates::weak::RateDataRow</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ab41dace2493e036460736d8124a3475c">log_beta_minus</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">gridfire::rates::weak::RateDataRow</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a359555f2b05e4b30bf810e12456df43b">log_beta_plus</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">gridfire::rates::weak::RateDataRow</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a075a70baa4ac5859fb01d493e08debdd">log_electron_capture</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">gridfire::rates::weak::RateDataRow</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#abd2d7fc00f582316eae824ccafef9b4b">log_neutrino_loss_ec</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">gridfire::rates::weak::RateDataRow</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#afc3f5d3e5c3ec52134619fd462922f85">log_positron_capture</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">gridfire::rates::weak::RateDataRow</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ad7908a8b8a1db5014f23a7b3855156b0">log_rhoye</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">gridfire::rates::weak::RateDataRow</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ac08d42071950006ccf3c438253ef9ee9">mu_e</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">gridfire::rates::weak::RateDataRow</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a2344c046a615bc6ff07327d6bcfe074b">t9</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">gridfire::rates::weak::RateDataRow</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a318b62e183dcb49c04260832454fa721">Z</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">gridfire::rates::weak::RateDataRow</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html
new file mode 100644
index 00000000..28e1eb1b
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html
@@ -0,0 +1,354 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::rates::weak::RateDataRow Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::RateDataRow Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>One row of the unified weak-rate data table for a specific isotope and state.  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;weak_types.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:aee9ee73218397780a2a7708c29779c73" id="r_aee9ee73218397780a2a7708c29779c73"><td class="memItemLeft" align="right" valign="top">uint16_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aee9ee73218397780a2a7708c29779c73">A</a></td></tr>
+<tr class="memdesc:aee9ee73218397780a2a7708c29779c73"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mass number.  <br /></td></tr>
+<tr class="separator:aee9ee73218397780a2a7708c29779c73"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a318b62e183dcb49c04260832454fa721" id="r_a318b62e183dcb49c04260832454fa721"><td class="memItemLeft" align="right" valign="top">uint8_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a318b62e183dcb49c04260832454fa721">Z</a></td></tr>
+<tr class="memdesc:a318b62e183dcb49c04260832454fa721"><td class="mdescLeft">&#160;</td><td class="mdescRight">Proton number.  <br /></td></tr>
+<tr class="separator:a318b62e183dcb49c04260832454fa721"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2344c046a615bc6ff07327d6bcfe074b" id="r_a2344c046a615bc6ff07327d6bcfe074b"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2344c046a615bc6ff07327d6bcfe074b">t9</a></td></tr>
+<tr class="memdesc:a2344c046a615bc6ff07327d6bcfe074b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Temperature in GK.  <br /></td></tr>
+<tr class="separator:a2344c046a615bc6ff07327d6bcfe074b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad7908a8b8a1db5014f23a7b3855156b0" id="r_ad7908a8b8a1db5014f23a7b3855156b0"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad7908a8b8a1db5014f23a7b3855156b0">log_rhoye</a></td></tr>
+<tr class="memdesc:ad7908a8b8a1db5014f23a7b3855156b0"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(rho*Ye) (cgs density times electron fraction).  <br /></td></tr>
+<tr class="separator:ad7908a8b8a1db5014f23a7b3855156b0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac08d42071950006ccf3c438253ef9ee9" id="r_ac08d42071950006ccf3c438253ef9ee9"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac08d42071950006ccf3c438253ef9ee9">mu_e</a></td></tr>
+<tr class="memdesc:ac08d42071950006ccf3c438253ef9ee9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Electron chemical potential (MeV).  <br /></td></tr>
+<tr class="separator:ac08d42071950006ccf3c438253ef9ee9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a359555f2b05e4b30bf810e12456df43b" id="r_a359555f2b05e4b30bf810e12456df43b"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a359555f2b05e4b30bf810e12456df43b">log_beta_plus</a></td></tr>
+<tr class="memdesc:a359555f2b05e4b30bf810e12456df43b"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(β+ decay rate).  <br /></td></tr>
+<tr class="separator:a359555f2b05e4b30bf810e12456df43b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a075a70baa4ac5859fb01d493e08debdd" id="r_a075a70baa4ac5859fb01d493e08debdd"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a075a70baa4ac5859fb01d493e08debdd">log_electron_capture</a></td></tr>
+<tr class="memdesc:a075a70baa4ac5859fb01d493e08debdd"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(e− capture rate).  <br /></td></tr>
+<tr class="separator:a075a70baa4ac5859fb01d493e08debdd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abd2d7fc00f582316eae824ccafef9b4b" id="r_abd2d7fc00f582316eae824ccafef9b4b"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abd2d7fc00f582316eae824ccafef9b4b">log_neutrino_loss_ec</a></td></tr>
+<tr class="memdesc:abd2d7fc00f582316eae824ccafef9b4b"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(neutrino loss for β+ and e− capture).  <br /></td></tr>
+<tr class="separator:abd2d7fc00f582316eae824ccafef9b4b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab41dace2493e036460736d8124a3475c" id="r_ab41dace2493e036460736d8124a3475c"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab41dace2493e036460736d8124a3475c">log_beta_minus</a></td></tr>
+<tr class="memdesc:ab41dace2493e036460736d8124a3475c"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(β− decay rate).  <br /></td></tr>
+<tr class="separator:ab41dace2493e036460736d8124a3475c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afc3f5d3e5c3ec52134619fd462922f85" id="r_afc3f5d3e5c3ec52134619fd462922f85"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afc3f5d3e5c3ec52134619fd462922f85">log_positron_capture</a></td></tr>
+<tr class="memdesc:afc3f5d3e5c3ec52134619fd462922f85"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(e+ capture rate).  <br /></td></tr>
+<tr class="separator:afc3f5d3e5c3ec52134619fd462922f85"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9d4db2970fc7f525824f6666198b3d56" id="r_a9d4db2970fc7f525824f6666198b3d56"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9d4db2970fc7f525824f6666198b3d56">log_antineutrino_loss_bd</a></td></tr>
+<tr class="memdesc:a9d4db2970fc7f525824f6666198b3d56"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(antineutrino loss for β− and e+ capture).  <br /></td></tr>
+<tr class="separator:a9d4db2970fc7f525824f6666198b3d56"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>One row of the unified weak-rate data table for a specific isotope and state. </p>
+<p>Units and meanings:</p><ul>
+<li>t9: temperature in GK (10^9 K).</li>
+<li>log_rhoye: base-10 logarithm of rho*Ye where rho is g cm^-3 and Ye is electron fraction.</li>
+<li>mu_e: electron chemical potential in MeV.</li>
+<li>log_*: base-10 logarithm of the tabulated rate or neutrino-energy loss term.</li>
+</ul>
+<p>Channel mappings:</p><ul>
+<li>beta-plus (β+): log_beta_plus, neutrino-loss column log_neutrino_loss_ec.</li>
+<li>electron capture (e− cap): log_electron_capture, neutrino-loss column log_neutrino_loss_ec.</li>
+<li>beta-minus (β−): log_beta_minus, neutrino-loss column log_antineutrino_loss_bd.</li>
+<li>positron capture (e+ cap): log_positron_capture, neutrino-loss column log_antineutrino_loss_bd. </li>
+</ul>
+</div><h2 class="groupheader">Member Data Documentation</h2>
+<a id="aee9ee73218397780a2a7708c29779c73" name="aee9ee73218397780a2a7708c29779c73"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aee9ee73218397780a2a7708c29779c73">&#9670;&#160;</a></span>A</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">uint16_t gridfire::rates::weak::RateDataRow::A</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Mass number. </p>
+
+</div>
+</div>
+<a id="a9d4db2970fc7f525824f6666198b3d56" name="a9d4db2970fc7f525824f6666198b3d56"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9d4db2970fc7f525824f6666198b3d56">&#9670;&#160;</a></span>log_antineutrino_loss_bd</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::log_antineutrino_loss_bd</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(antineutrino loss for β− and e+ capture). </p>
+
+</div>
+</div>
+<a id="ab41dace2493e036460736d8124a3475c" name="ab41dace2493e036460736d8124a3475c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab41dace2493e036460736d8124a3475c">&#9670;&#160;</a></span>log_beta_minus</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::log_beta_minus</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(β− decay rate). </p>
+
+</div>
+</div>
+<a id="a359555f2b05e4b30bf810e12456df43b" name="a359555f2b05e4b30bf810e12456df43b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a359555f2b05e4b30bf810e12456df43b">&#9670;&#160;</a></span>log_beta_plus</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::log_beta_plus</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(β+ decay rate). </p>
+
+</div>
+</div>
+<a id="a075a70baa4ac5859fb01d493e08debdd" name="a075a70baa4ac5859fb01d493e08debdd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a075a70baa4ac5859fb01d493e08debdd">&#9670;&#160;</a></span>log_electron_capture</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::log_electron_capture</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(e− capture rate). </p>
+
+</div>
+</div>
+<a id="abd2d7fc00f582316eae824ccafef9b4b" name="abd2d7fc00f582316eae824ccafef9b4b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abd2d7fc00f582316eae824ccafef9b4b">&#9670;&#160;</a></span>log_neutrino_loss_ec</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::log_neutrino_loss_ec</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(neutrino loss for β+ and e− capture). </p>
+
+</div>
+</div>
+<a id="afc3f5d3e5c3ec52134619fd462922f85" name="afc3f5d3e5c3ec52134619fd462922f85"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afc3f5d3e5c3ec52134619fd462922f85">&#9670;&#160;</a></span>log_positron_capture</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::log_positron_capture</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(e+ capture rate). </p>
+
+</div>
+</div>
+<a id="ad7908a8b8a1db5014f23a7b3855156b0" name="ad7908a8b8a1db5014f23a7b3855156b0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad7908a8b8a1db5014f23a7b3855156b0">&#9670;&#160;</a></span>log_rhoye</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::log_rhoye</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(rho*Ye) (cgs density times electron fraction). </p>
+
+</div>
+</div>
+<a id="ac08d42071950006ccf3c438253ef9ee9" name="ac08d42071950006ccf3c438253ef9ee9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac08d42071950006ccf3c438253ef9ee9">&#9670;&#160;</a></span>mu_e</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::mu_e</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Electron chemical potential (MeV). </p>
+
+</div>
+</div>
+<a id="a2344c046a615bc6ff07327d6bcfe074b" name="a2344c046a615bc6ff07327d6bcfe074b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2344c046a615bc6ff07327d6bcfe074b">&#9670;&#160;</a></span>t9</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::t9</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Temperature in GK. </p>
+
+</div>
+</div>
+<a id="a318b62e183dcb49c04260832454fa721" name="a318b62e183dcb49c04260832454fa721"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a318b62e183dcb49c04260832454fa721">&#9670;&#160;</a></span>Z</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">uint8_t gridfire::rates::weak::RateDataRow::Z</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Proton number. </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak__types_8h.html">weak_types.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates.html">rates</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">weak</a></li><li class="navelem"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">RateDataRow</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row.js b/docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row.js
new file mode 100644
index 00000000..a24da36a
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row.js
@@ -0,0 +1,14 @@
+var structgridfire_1_1rates_1_1weak_1_1_rate_data_row =
+[
+    [ "A", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#aee9ee73218397780a2a7708c29779c73", null ],
+    [ "log_antineutrino_loss_bd", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a9d4db2970fc7f525824f6666198b3d56", null ],
+    [ "log_beta_minus", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ab41dace2493e036460736d8124a3475c", null ],
+    [ "log_beta_plus", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a359555f2b05e4b30bf810e12456df43b", null ],
+    [ "log_electron_capture", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a075a70baa4ac5859fb01d493e08debdd", null ],
+    [ "log_neutrino_loss_ec", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#abd2d7fc00f582316eae824ccafef9b4b", null ],
+    [ "log_positron_capture", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#afc3f5d3e5c3ec52134619fd462922f85", null ],
+    [ "log_rhoye", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ad7908a8b8a1db5014f23a7b3855156b0", null ],
+    [ "mu_e", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#ac08d42071950006ccf3c438253ef9ee9", null ],
+    [ "t9", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a2344c046a615bc6ff07327d6bcfe074b", null ],
+    [ "Z", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#a318b62e183dcb49c04260832454fa721", null ]
+];
\ No newline at end of file
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives-members.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives-members.html
new file mode 100644
index 00000000..bfc37a44
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives-members.html
@@ -0,0 +1,123 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakRateDerivatives Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html">gridfire::rates::weak::WeakRateDerivatives</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a87894b5fdb0323c41f8e1e179ffefd1e">d_log_antineutrino_loss_bd</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html">gridfire::rates::weak::WeakRateDerivatives</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a54ba76b67d037954af1cbd6052becc61">d_log_beta_minus</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html">gridfire::rates::weak::WeakRateDerivatives</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#ab79353551bc5f832c986d24384d8a53a">d_log_beta_plus</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html">gridfire::rates::weak::WeakRateDerivatives</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a5e15e3d4d03288bd6f5dfc7054120514">d_log_electron_capture</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html">gridfire::rates::weak::WeakRateDerivatives</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a415f5ff7ee18cc241eab5fbf6a0cdc17">d_log_neutrino_loss_ec</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html">gridfire::rates::weak::WeakRateDerivatives</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a3cf82898078fcc9aa69344b4d2cf8783">d_log_positron_capture</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html">gridfire::rates::weak::WeakRateDerivatives</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html
new file mode 100644
index 00000000..384dc727
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html
@@ -0,0 +1,230 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::rates::weak::WeakRateDerivatives Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakRateDerivatives Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye), mu_e).  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;weak_types.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:ab79353551bc5f832c986d24384d8a53a" id="r_ab79353551bc5f832c986d24384d8a53a"><td class="memItemLeft" align="right" valign="top">std::array&lt; double, 3 &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab79353551bc5f832c986d24384d8a53a">d_log_beta_plus</a></td></tr>
+<tr class="separator:ab79353551bc5f832c986d24384d8a53a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5e15e3d4d03288bd6f5dfc7054120514" id="r_a5e15e3d4d03288bd6f5dfc7054120514"><td class="memItemLeft" align="right" valign="top">std::array&lt; double, 3 &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5e15e3d4d03288bd6f5dfc7054120514">d_log_electron_capture</a></td></tr>
+<tr class="separator:a5e15e3d4d03288bd6f5dfc7054120514"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a415f5ff7ee18cc241eab5fbf6a0cdc17" id="r_a415f5ff7ee18cc241eab5fbf6a0cdc17"><td class="memItemLeft" align="right" valign="top">std::array&lt; double, 3 &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a415f5ff7ee18cc241eab5fbf6a0cdc17">d_log_neutrino_loss_ec</a></td></tr>
+<tr class="separator:a415f5ff7ee18cc241eab5fbf6a0cdc17"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a54ba76b67d037954af1cbd6052becc61" id="r_a54ba76b67d037954af1cbd6052becc61"><td class="memItemLeft" align="right" valign="top">std::array&lt; double, 3 &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a54ba76b67d037954af1cbd6052becc61">d_log_beta_minus</a></td></tr>
+<tr class="separator:a54ba76b67d037954af1cbd6052becc61"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3cf82898078fcc9aa69344b4d2cf8783" id="r_a3cf82898078fcc9aa69344b4d2cf8783"><td class="memItemLeft" align="right" valign="top">std::array&lt; double, 3 &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3cf82898078fcc9aa69344b4d2cf8783">d_log_positron_capture</a></td></tr>
+<tr class="separator:a3cf82898078fcc9aa69344b4d2cf8783"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a87894b5fdb0323c41f8e1e179ffefd1e" id="r_a87894b5fdb0323c41f8e1e179ffefd1e"><td class="memItemLeft" align="right" valign="top">std::array&lt; double, 3 &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a87894b5fdb0323c41f8e1e179ffefd1e">d_log_antineutrino_loss_bd</a></td></tr>
+<tr class="separator:a87894b5fdb0323c41f8e1e179ffefd1e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye), mu_e). </p>
+<p>Array ordering is [d/dT9, d/dlogRhoYe, d/dMuE] for each corresponding field. </p>
+</div><h2 class="groupheader">Member Data Documentation</h2>
+<a id="a87894b5fdb0323c41f8e1e179ffefd1e" name="a87894b5fdb0323c41f8e1e179ffefd1e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a87894b5fdb0323c41f8e1e179ffefd1e">&#9670;&#160;</a></span>d_log_antineutrino_loss_bd</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::array&lt;double, 3&gt; gridfire::rates::weak::WeakRateDerivatives::d_log_antineutrino_loss_bd</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a54ba76b67d037954af1cbd6052becc61" name="a54ba76b67d037954af1cbd6052becc61"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a54ba76b67d037954af1cbd6052becc61">&#9670;&#160;</a></span>d_log_beta_minus</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::array&lt;double, 3&gt; gridfire::rates::weak::WeakRateDerivatives::d_log_beta_minus</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab79353551bc5f832c986d24384d8a53a" name="ab79353551bc5f832c986d24384d8a53a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab79353551bc5f832c986d24384d8a53a">&#9670;&#160;</a></span>d_log_beta_plus</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::array&lt;double, 3&gt; gridfire::rates::weak::WeakRateDerivatives::d_log_beta_plus</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a5e15e3d4d03288bd6f5dfc7054120514" name="a5e15e3d4d03288bd6f5dfc7054120514"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5e15e3d4d03288bd6f5dfc7054120514">&#9670;&#160;</a></span>d_log_electron_capture</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::array&lt;double, 3&gt; gridfire::rates::weak::WeakRateDerivatives::d_log_electron_capture</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a415f5ff7ee18cc241eab5fbf6a0cdc17" name="a415f5ff7ee18cc241eab5fbf6a0cdc17"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a415f5ff7ee18cc241eab5fbf6a0cdc17">&#9670;&#160;</a></span>d_log_neutrino_loss_ec</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::array&lt;double, 3&gt; gridfire::rates::weak::WeakRateDerivatives::d_log_neutrino_loss_ec</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a3cf82898078fcc9aa69344b4d2cf8783" name="a3cf82898078fcc9aa69344b4d2cf8783"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3cf82898078fcc9aa69344b4d2cf8783">&#9670;&#160;</a></span>d_log_positron_capture</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::array&lt;double, 3&gt; gridfire::rates::weak::WeakRateDerivatives::d_log_positron_capture</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak__types_8h.html">weak_types.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates.html">rates</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">weak</a></li><li class="navelem"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html">WeakRateDerivatives</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.js b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.js
new file mode 100644
index 00000000..712a2cee
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.js
@@ -0,0 +1,9 @@
+var structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives =
+[
+    [ "d_log_antineutrino_loss_bd", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a87894b5fdb0323c41f8e1e179ffefd1e", null ],
+    [ "d_log_beta_minus", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a54ba76b67d037954af1cbd6052becc61", null ],
+    [ "d_log_beta_plus", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#ab79353551bc5f832c986d24384d8a53a", null ],
+    [ "d_log_electron_capture", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a5e15e3d4d03288bd6f5dfc7054120514", null ],
+    [ "d_log_neutrino_loss_ec", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a415f5ff7ee18cc241eab5fbf6a0cdc17", null ],
+    [ "d_log_positron_capture", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a3cf82898078fcc9aa69344b4d2cf8783", null ]
+];
\ No newline at end of file
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload-members.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload-members.html
new file mode 100644
index 00000000..3b82390b
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload-members.html
@@ -0,0 +1,123 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakRatePayload Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">gridfire::rates::weak::WeakRatePayload</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9134b85837be88ece72c20df9edce50d">log_antineutrino_loss_bd</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">gridfire::rates::weak::WeakRatePayload</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aa2e81d295afba465427e46b36e1438e4">log_beta_minus</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">gridfire::rates::weak::WeakRatePayload</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9d71d093fbb35cd8a451ea12cde28771">log_beta_plus</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">gridfire::rates::weak::WeakRatePayload</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aeb0494f46a0c6b9e29ed4cc15f07364b">log_electron_capture</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">gridfire::rates::weak::WeakRatePayload</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a6bbeb82cc27fd59ceafa320c1515106a">log_neutrino_loss_ec</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">gridfire::rates::weak::WeakRatePayload</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#abe1b2dd11ec550311a58555f3a945cbe">log_positron_capture</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">gridfire::rates::weak::WeakRatePayload</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html
new file mode 100644
index 00000000..6ef25e32
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html
@@ -0,0 +1,248 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::rates::weak::WeakRatePayload Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakRatePayload Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Interpolated weak-rate payload at a single state.  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;weak_types.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a9d71d093fbb35cd8a451ea12cde28771" id="r_a9d71d093fbb35cd8a451ea12cde28771"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9d71d093fbb35cd8a451ea12cde28771">log_beta_plus</a></td></tr>
+<tr class="memdesc:a9d71d093fbb35cd8a451ea12cde28771"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(β+ decay rate).  <br /></td></tr>
+<tr class="separator:a9d71d093fbb35cd8a451ea12cde28771"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aeb0494f46a0c6b9e29ed4cc15f07364b" id="r_aeb0494f46a0c6b9e29ed4cc15f07364b"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aeb0494f46a0c6b9e29ed4cc15f07364b">log_electron_capture</a></td></tr>
+<tr class="memdesc:aeb0494f46a0c6b9e29ed4cc15f07364b"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(e− capture rate).  <br /></td></tr>
+<tr class="separator:aeb0494f46a0c6b9e29ed4cc15f07364b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6bbeb82cc27fd59ceafa320c1515106a" id="r_a6bbeb82cc27fd59ceafa320c1515106a"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6bbeb82cc27fd59ceafa320c1515106a">log_neutrino_loss_ec</a></td></tr>
+<tr class="memdesc:a6bbeb82cc27fd59ceafa320c1515106a"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(neutrino loss for β+ and e− capture).  <br /></td></tr>
+<tr class="separator:a6bbeb82cc27fd59ceafa320c1515106a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa2e81d295afba465427e46b36e1438e4" id="r_aa2e81d295afba465427e46b36e1438e4"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa2e81d295afba465427e46b36e1438e4">log_beta_minus</a></td></tr>
+<tr class="memdesc:aa2e81d295afba465427e46b36e1438e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(β− decay rate).  <br /></td></tr>
+<tr class="separator:aa2e81d295afba465427e46b36e1438e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abe1b2dd11ec550311a58555f3a945cbe" id="r_abe1b2dd11ec550311a58555f3a945cbe"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abe1b2dd11ec550311a58555f3a945cbe">log_positron_capture</a></td></tr>
+<tr class="memdesc:abe1b2dd11ec550311a58555f3a945cbe"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(e+ capture rate).  <br /></td></tr>
+<tr class="separator:abe1b2dd11ec550311a58555f3a945cbe"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9134b85837be88ece72c20df9edce50d" id="r_a9134b85837be88ece72c20df9edce50d"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9134b85837be88ece72c20df9edce50d">log_antineutrino_loss_bd</a></td></tr>
+<tr class="memdesc:a9134b85837be88ece72c20df9edce50d"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(antineutrino loss for β− and e+ capture).  <br /></td></tr>
+<tr class="separator:a9134b85837be88ece72c20df9edce50d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Interpolated weak-rate payload at a single state. </p>
+<p>All values are base-10 logarithms of the corresponding rates or neutrino-loss terms. Consumers typically convert with pow(10, log_value) and may apply sentinel thresholds at the usage site. </p>
+</div><h2 class="groupheader">Member Data Documentation</h2>
+<a id="a9134b85837be88ece72c20df9edce50d" name="a9134b85837be88ece72c20df9edce50d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9134b85837be88ece72c20df9edce50d">&#9670;&#160;</a></span>log_antineutrino_loss_bd</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakRatePayload::log_antineutrino_loss_bd</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(antineutrino loss for β− and e+ capture). </p>
+
+</div>
+</div>
+<a id="aa2e81d295afba465427e46b36e1438e4" name="aa2e81d295afba465427e46b36e1438e4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa2e81d295afba465427e46b36e1438e4">&#9670;&#160;</a></span>log_beta_minus</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakRatePayload::log_beta_minus</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(β− decay rate). </p>
+
+</div>
+</div>
+<a id="a9d71d093fbb35cd8a451ea12cde28771" name="a9d71d093fbb35cd8a451ea12cde28771"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9d71d093fbb35cd8a451ea12cde28771">&#9670;&#160;</a></span>log_beta_plus</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakRatePayload::log_beta_plus</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(β+ decay rate). </p>
+
+</div>
+</div>
+<a id="aeb0494f46a0c6b9e29ed4cc15f07364b" name="aeb0494f46a0c6b9e29ed4cc15f07364b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aeb0494f46a0c6b9e29ed4cc15f07364b">&#9670;&#160;</a></span>log_electron_capture</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakRatePayload::log_electron_capture</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(e− capture rate). </p>
+
+</div>
+</div>
+<a id="a6bbeb82cc27fd59ceafa320c1515106a" name="a6bbeb82cc27fd59ceafa320c1515106a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6bbeb82cc27fd59ceafa320c1515106a">&#9670;&#160;</a></span>log_neutrino_loss_ec</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakRatePayload::log_neutrino_loss_ec</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(neutrino loss for β+ and e− capture). </p>
+
+</div>
+</div>
+<a id="abe1b2dd11ec550311a58555f3a945cbe" name="abe1b2dd11ec550311a58555f3a945cbe"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abe1b2dd11ec550311a58555f3a945cbe">&#9670;&#160;</a></span>log_positron_capture</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakRatePayload::log_positron_capture</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(e+ capture rate). </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak__types_8h.html">weak_types.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates.html">rates</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">weak</a></li><li class="navelem"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">WeakRatePayload</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.js b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.js
new file mode 100644
index 00000000..300cce05
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.js
@@ -0,0 +1,9 @@
+var structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload =
+[
+    [ "log_antineutrino_loss_bd", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9134b85837be88ece72c20df9edce50d", null ],
+    [ "log_beta_minus", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aa2e81d295afba465427e46b36e1438e4", null ],
+    [ "log_beta_plus", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a9d71d093fbb35cd8a451ea12cde28771", null ],
+    [ "log_electron_capture", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#aeb0494f46a0c6b9e29ed4cc15f07364b", null ],
+    [ "log_neutrino_loss_ec", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#a6bbeb82cc27fd59ceafa320c1515106a", null ],
+    [ "log_positron_capture", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#abe1b2dd11ec550311a58555f3a945cbe", null ]
+];
\ No newline at end of file
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants-members.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants-members.html
new file mode 100644
index 00000000..8e7cf76f
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants-members.html
@@ -0,0 +1,131 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReaction::constants Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">gridfire::rates::weak::WeakReaction::constants</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abe06f72b5b646cb3f1462b56d94a1de4">amu</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">gridfire::rates::weak::WeakReaction::constants</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab176a60ea64181d84be3bb6496ad0b0e">c</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">gridfire::rates::weak::WeakReaction::constants</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8998f5acb979463eeabb14da50fb6856">electronMassG</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">gridfire::rates::weak::WeakReaction::constants</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a24d6517e15c177fb8ca72f08f8eaf509">electronMassMeV</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">gridfire::rates::weak::WeakReaction::constants</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#af834029caff08f9d5f7ff3a817ade469">eVgRelation</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">gridfire::rates::weak::WeakReaction::constants</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ae527298ffcdeb0b7b4089eeed4ddb58d">MeV2Erg</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">gridfire::rates::weak::WeakReaction::constants</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab60f42677de82f3aab77d2af846c2ffd">MeVgRelation</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">gridfire::rates::weak::WeakReaction::constants</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a57273916131b68d1aed6e16d85667427">MeVPerGraph</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">gridfire::rates::weak::WeakReaction::constants</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a2d6c6d4eb9b54c050c266298611c1e44">neutronMassG</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">gridfire::rates::weak::WeakReaction::constants</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a0629ea0e5d51166e400696a358b0045e">neutronMassMeV</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">gridfire::rates::weak::WeakReaction::constants</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abdb3124f6ef5ea294f402d30717fa208">protonMassG</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">gridfire::rates::weak::WeakReaction::constants</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8a780d3937e60794f007ec65fe866a56">protonMassMeV</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">gridfire::rates::weak::WeakReaction::constants</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a016c3e02f622e21073f9110707177b76">speedOfLight</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">gridfire::rates::weak::WeakReaction::constants</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab7d46e02bb7264ff3aada6b3997b2ab1">u_to_MeV</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">gridfire::rates::weak::WeakReaction::constants</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html
new file mode 100644
index 00000000..1c0cd709
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html
@@ -0,0 +1,350 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::rates::weak::WeakReaction::constants Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReaction::constants Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:ab176a60ea64181d84be3bb6496ad0b0e" id="r_ab176a60ea64181d84be3bb6496ad0b0e"><td class="memItemLeft" align="right" valign="top">const fourdst::constant::Constants &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab176a60ea64181d84be3bb6496ad0b0e">c</a> = fourdst::constant::Constants::getInstance()</td></tr>
+<tr class="separator:ab176a60ea64181d84be3bb6496ad0b0e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2d6c6d4eb9b54c050c266298611c1e44" id="r_a2d6c6d4eb9b54c050c266298611c1e44"><td class="memItemLeft" align="right" valign="top">fourdst::constant::Constant&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a2d6c6d4eb9b54c050c266298611c1e44">neutronMassG</a> = c.get(&quot;mN&quot;)</td></tr>
+<tr class="separator:a2d6c6d4eb9b54c050c266298611c1e44"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abdb3124f6ef5ea294f402d30717fa208" id="r_abdb3124f6ef5ea294f402d30717fa208"><td class="memItemLeft" align="right" valign="top">fourdst::constant::Constant&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abdb3124f6ef5ea294f402d30717fa208">protonMassG</a> = c.get(&quot;mP&quot;)</td></tr>
+<tr class="separator:abdb3124f6ef5ea294f402d30717fa208"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8998f5acb979463eeabb14da50fb6856" id="r_a8998f5acb979463eeabb14da50fb6856"><td class="memItemLeft" align="right" valign="top">fourdst::constant::Constant&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8998f5acb979463eeabb14da50fb6856">electronMassG</a> = c.get(&quot;mE&quot;)</td></tr>
+<tr class="separator:a8998f5acb979463eeabb14da50fb6856"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a016c3e02f622e21073f9110707177b76" id="r_a016c3e02f622e21073f9110707177b76"><td class="memItemLeft" align="right" valign="top">fourdst::constant::Constant&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a016c3e02f622e21073f9110707177b76">speedOfLight</a> = c.get(&quot;c&quot;)</td></tr>
+<tr class="separator:a016c3e02f622e21073f9110707177b76"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af834029caff08f9d5f7ff3a817ade469" id="r_af834029caff08f9d5f7ff3a817ade469"><td class="memItemLeft" align="right" valign="top">fourdst::constant::Constant&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af834029caff08f9d5f7ff3a817ade469">eVgRelation</a> = c.get(&quot;eV_kg&quot;)</td></tr>
+<tr class="separator:af834029caff08f9d5f7ff3a817ade469"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae527298ffcdeb0b7b4089eeed4ddb58d" id="r_ae527298ffcdeb0b7b4089eeed4ddb58d"><td class="memItemLeft" align="right" valign="top">fourdst::constant::Constant&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae527298ffcdeb0b7b4089eeed4ddb58d">MeV2Erg</a> = c.get(&quot;MeV_to_erg&quot;)</td></tr>
+<tr class="separator:ae527298ffcdeb0b7b4089eeed4ddb58d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abe06f72b5b646cb3f1462b56d94a1de4" id="r_abe06f72b5b646cb3f1462b56d94a1de4"><td class="memItemLeft" align="right" valign="top">fourdst::constant::Constant&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#abe06f72b5b646cb3f1462b56d94a1de4">amu</a> = c.get(&quot;u&quot;)</td></tr>
+<tr class="separator:abe06f72b5b646cb3f1462b56d94a1de4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab60f42677de82f3aab77d2af846c2ffd" id="r_ab60f42677de82f3aab77d2af846c2ffd"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab60f42677de82f3aab77d2af846c2ffd">MeVgRelation</a> = eVgRelation.value * 1.0e6</td></tr>
+<tr class="separator:ab60f42677de82f3aab77d2af846c2ffd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a57273916131b68d1aed6e16d85667427" id="r_a57273916131b68d1aed6e16d85667427"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a57273916131b68d1aed6e16d85667427">MeVPerGraph</a> = 1.0/<a class="el" href="#ab60f42677de82f3aab77d2af846c2ffd">MeVgRelation</a></td></tr>
+<tr class="separator:a57273916131b68d1aed6e16d85667427"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0629ea0e5d51166e400696a358b0045e" id="r_a0629ea0e5d51166e400696a358b0045e"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0629ea0e5d51166e400696a358b0045e">neutronMassMeV</a> = neutronMassG.value * <a class="el" href="#ab60f42677de82f3aab77d2af846c2ffd">MeVgRelation</a></td></tr>
+<tr class="separator:a0629ea0e5d51166e400696a358b0045e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8a780d3937e60794f007ec65fe866a56" id="r_a8a780d3937e60794f007ec65fe866a56"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8a780d3937e60794f007ec65fe866a56">protonMassMeV</a> = protonMassG.value * <a class="el" href="#ab60f42677de82f3aab77d2af846c2ffd">MeVgRelation</a></td></tr>
+<tr class="separator:a8a780d3937e60794f007ec65fe866a56"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a24d6517e15c177fb8ca72f08f8eaf509" id="r_a24d6517e15c177fb8ca72f08f8eaf509"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a24d6517e15c177fb8ca72f08f8eaf509">electronMassMeV</a> = electronMassG.value * <a class="el" href="#ab60f42677de82f3aab77d2af846c2ffd">MeVgRelation</a></td></tr>
+<tr class="separator:a24d6517e15c177fb8ca72f08f8eaf509"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab7d46e02bb7264ff3aada6b3997b2ab1" id="r_ab7d46e02bb7264ff3aada6b3997b2ab1"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ab7d46e02bb7264ff3aada6b3997b2ab1">u_to_MeV</a> = (amu.value * speedOfLight.value * speedOfLight.value)/MeV2Erg.value</td></tr>
+<tr class="separator:ab7d46e02bb7264ff3aada6b3997b2ab1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="abe06f72b5b646cb3f1462b56d94a1de4" name="abe06f72b5b646cb3f1462b56d94a1de4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abe06f72b5b646cb3f1462b56d94a1de4">&#9670;&#160;</a></span>amu</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::constant::Constant gridfire::rates::weak::WeakReaction::constants::amu = c.get(&quot;u&quot;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab176a60ea64181d84be3bb6496ad0b0e" name="ab176a60ea64181d84be3bb6496ad0b0e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab176a60ea64181d84be3bb6496ad0b0e">&#9670;&#160;</a></span>c</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const fourdst::constant::Constants&amp; gridfire::rates::weak::WeakReaction::constants::c = fourdst::constant::Constants::getInstance()</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a8998f5acb979463eeabb14da50fb6856" name="a8998f5acb979463eeabb14da50fb6856"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8998f5acb979463eeabb14da50fb6856">&#9670;&#160;</a></span>electronMassG</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::constant::Constant gridfire::rates::weak::WeakReaction::constants::electronMassG = c.get(&quot;mE&quot;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a24d6517e15c177fb8ca72f08f8eaf509" name="a24d6517e15c177fb8ca72f08f8eaf509"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a24d6517e15c177fb8ca72f08f8eaf509">&#9670;&#160;</a></span>electronMassMeV</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::constants::electronMassMeV = electronMassG.value * <a class="el" href="#ab60f42677de82f3aab77d2af846c2ffd">MeVgRelation</a></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="af834029caff08f9d5f7ff3a817ade469" name="af834029caff08f9d5f7ff3a817ade469"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af834029caff08f9d5f7ff3a817ade469">&#9670;&#160;</a></span>eVgRelation</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::constant::Constant gridfire::rates::weak::WeakReaction::constants::eVgRelation = c.get(&quot;eV_kg&quot;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae527298ffcdeb0b7b4089eeed4ddb58d" name="ae527298ffcdeb0b7b4089eeed4ddb58d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae527298ffcdeb0b7b4089eeed4ddb58d">&#9670;&#160;</a></span>MeV2Erg</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::constant::Constant gridfire::rates::weak::WeakReaction::constants::MeV2Erg = c.get(&quot;MeV_to_erg&quot;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab60f42677de82f3aab77d2af846c2ffd" name="ab60f42677de82f3aab77d2af846c2ffd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab60f42677de82f3aab77d2af846c2ffd">&#9670;&#160;</a></span>MeVgRelation</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::constants::MeVgRelation = eVgRelation.value * 1.0e6</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a57273916131b68d1aed6e16d85667427" name="a57273916131b68d1aed6e16d85667427"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a57273916131b68d1aed6e16d85667427">&#9670;&#160;</a></span>MeVPerGraph</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::constants::MeVPerGraph = 1.0/<a class="el" href="#ab60f42677de82f3aab77d2af846c2ffd">MeVgRelation</a></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a2d6c6d4eb9b54c050c266298611c1e44" name="a2d6c6d4eb9b54c050c266298611c1e44"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2d6c6d4eb9b54c050c266298611c1e44">&#9670;&#160;</a></span>neutronMassG</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::constant::Constant gridfire::rates::weak::WeakReaction::constants::neutronMassG = c.get(&quot;mN&quot;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a0629ea0e5d51166e400696a358b0045e" name="a0629ea0e5d51166e400696a358b0045e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0629ea0e5d51166e400696a358b0045e">&#9670;&#160;</a></span>neutronMassMeV</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::constants::neutronMassMeV = neutronMassG.value * <a class="el" href="#ab60f42677de82f3aab77d2af846c2ffd">MeVgRelation</a></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="abdb3124f6ef5ea294f402d30717fa208" name="abdb3124f6ef5ea294f402d30717fa208"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abdb3124f6ef5ea294f402d30717fa208">&#9670;&#160;</a></span>protonMassG</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::constant::Constant gridfire::rates::weak::WeakReaction::constants::protonMassG = c.get(&quot;mP&quot;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a8a780d3937e60794f007ec65fe866a56" name="a8a780d3937e60794f007ec65fe866a56"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8a780d3937e60794f007ec65fe866a56">&#9670;&#160;</a></span>protonMassMeV</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::constants::protonMassMeV = protonMassG.value * <a class="el" href="#ab60f42677de82f3aab77d2af846c2ffd">MeVgRelation</a></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a016c3e02f622e21073f9110707177b76" name="a016c3e02f622e21073f9110707177b76"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a016c3e02f622e21073f9110707177b76">&#9670;&#160;</a></span>speedOfLight</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::constant::Constant gridfire::rates::weak::WeakReaction::constants::speedOfLight = c.get(&quot;c&quot;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab7d46e02bb7264ff3aada6b3997b2ab1" name="ab7d46e02bb7264ff3aada6b3997b2ab1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab7d46e02bb7264ff3aada6b3997b2ab1">&#9670;&#160;</a></span>u_to_MeV</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::constants::u_to_MeV = (amu.value * speedOfLight.value * speedOfLight.value)/MeV2Erg.value</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak_8h.html">weak.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates.html">rates</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">weak</a></li><li class="navelem"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">WeakReaction</a></li><li class="navelem"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">constants</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.js b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.js
new file mode 100644
index 00000000..e8361cb2
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.js
@@ -0,0 +1,17 @@
+var structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants =
+[
+    [ "amu", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abe06f72b5b646cb3f1462b56d94a1de4", null ],
+    [ "c", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab176a60ea64181d84be3bb6496ad0b0e", null ],
+    [ "electronMassG", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8998f5acb979463eeabb14da50fb6856", null ],
+    [ "electronMassMeV", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a24d6517e15c177fb8ca72f08f8eaf509", null ],
+    [ "eVgRelation", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#af834029caff08f9d5f7ff3a817ade469", null ],
+    [ "MeV2Erg", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ae527298ffcdeb0b7b4089eeed4ddb58d", null ],
+    [ "MeVgRelation", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab60f42677de82f3aab77d2af846c2ffd", null ],
+    [ "MeVPerGraph", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a57273916131b68d1aed6e16d85667427", null ],
+    [ "neutronMassG", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a2d6c6d4eb9b54c050c266298611c1e44", null ],
+    [ "neutronMassMeV", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a0629ea0e5d51166e400696a358b0045e", null ],
+    [ "protonMassG", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#abdb3124f6ef5ea294f402d30717fa208", null ],
+    [ "protonMassMeV", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a8a780d3937e60794f007ec65fe866a56", null ],
+    [ "speedOfLight", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a016c3e02f622e21073f9110707177b76", null ],
+    [ "u_to_MeV", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#ab7d46e02bb7264ff3aada6b3997b2ab1", null ]
+];
\ No newline at end of file
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry-members.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry-members.html
new file mode 100644
index 00000000..5d7c580e
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry-members.html
@@ -0,0 +1,124 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReactionEntry Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">gridfire::rates::weak::WeakReactionEntry</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#aa603395b65c8639f8d93f73b7d9bd61e">log_neutrino_loss</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">gridfire::rates::weak::WeakReactionEntry</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a90b6e47918fa750c28917ba6136c7880">log_rate</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">gridfire::rates::weak::WeakReactionEntry</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a17dde21438cabec9ae23a0d318c41a7a">log_rhoYe</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">gridfire::rates::weak::WeakReactionEntry</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a4a1cbc93d5e197a69a5a29a8cabc6498">mu_e</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">gridfire::rates::weak::WeakReactionEntry</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a5a2525ca7e7b2c812b1f67b3b0114aaf">operator&lt;&lt;</a>(std::ostream &amp;os, const WeakReactionEntry &amp;reaction)</td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">gridfire::rates::weak::WeakReactionEntry</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a549f4c9266722314f61d668d8507145c">T9</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">gridfire::rates::weak::WeakReactionEntry</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#ad0bb77849bda4934472675e196af87c8">type</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">gridfire::rates::weak::WeakReactionEntry</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html
new file mode 100644
index 00000000..ad6e60de
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html
@@ -0,0 +1,289 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::rates::weak::WeakReactionEntry Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReactionEntry Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>A single weak-reaction data point (type, state, and log values).  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;weak_types.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:ad0bb77849bda4934472675e196af87c8" id="r_ad0bb77849bda4934472675e196af87c8"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad0bb77849bda4934472675e196af87c8">type</a></td></tr>
+<tr class="memdesc:ad0bb77849bda4934472675e196af87c8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Channel.  <br /></td></tr>
+<tr class="separator:ad0bb77849bda4934472675e196af87c8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a549f4c9266722314f61d668d8507145c" id="r_a549f4c9266722314f61d668d8507145c"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a549f4c9266722314f61d668d8507145c">T9</a></td></tr>
+<tr class="memdesc:a549f4c9266722314f61d668d8507145c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Temperature in GK.  <br /></td></tr>
+<tr class="separator:a549f4c9266722314f61d668d8507145c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a17dde21438cabec9ae23a0d318c41a7a" id="r_a17dde21438cabec9ae23a0d318c41a7a"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a17dde21438cabec9ae23a0d318c41a7a">log_rhoYe</a></td></tr>
+<tr class="memdesc:a17dde21438cabec9ae23a0d318c41a7a"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(rho*Ye).  <br /></td></tr>
+<tr class="separator:a17dde21438cabec9ae23a0d318c41a7a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4a1cbc93d5e197a69a5a29a8cabc6498" id="r_a4a1cbc93d5e197a69a5a29a8cabc6498"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4a1cbc93d5e197a69a5a29a8cabc6498">mu_e</a></td></tr>
+<tr class="memdesc:a4a1cbc93d5e197a69a5a29a8cabc6498"><td class="mdescLeft">&#160;</td><td class="mdescRight">Electron chemical potential (MeV).  <br /></td></tr>
+<tr class="separator:a4a1cbc93d5e197a69a5a29a8cabc6498"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a90b6e47918fa750c28917ba6136c7880" id="r_a90b6e47918fa750c28917ba6136c7880"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a90b6e47918fa750c28917ba6136c7880">log_rate</a></td></tr>
+<tr class="memdesc:a90b6e47918fa750c28917ba6136c7880"><td class="mdescLeft">&#160;</td><td class="mdescRight">Channel-specific log10(rate).  <br /></td></tr>
+<tr class="separator:a90b6e47918fa750c28917ba6136c7880"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa603395b65c8639f8d93f73b7d9bd61e" id="r_aa603395b65c8639f8d93f73b7d9bd61e"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa603395b65c8639f8d93f73b7d9bd61e">log_neutrino_loss</a></td></tr>
+<tr class="memdesc:aa603395b65c8639f8d93f73b7d9bd61e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Corresponding log10(neutrino or antineutrino energy loss).  <br /></td></tr>
+<tr class="separator:aa603395b65c8639f8d93f73b7d9bd61e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="friends" name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:a5a2525ca7e7b2c812b1f67b3b0114aaf" id="r_a5a2525ca7e7b2c812b1f67b3b0114aaf"><td class="memItemLeft" align="right" valign="top">std::ostream &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5a2525ca7e7b2c812b1f67b3b0114aaf">operator&lt;&lt;</a> (std::ostream &amp;os, const <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a> &amp;reaction)</td></tr>
+<tr class="separator:a5a2525ca7e7b2c812b1f67b3b0114aaf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>A single weak-reaction data point (type, state, and log values). </p>
+<p>All rates and losses are base-10 logarithms. Useful for listing and filtering weak entries for a Species.</p>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><a class="code hl_struct" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a> e{<a class="code hl_enumvalue" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7">WeakReactionType::ELECTRON_CAPTURE</a>, 3.0f, 6.0f, 2.0f, -2.3f, -1.7f};</div>
+<div class="line">std::cout &lt;&lt; e &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>; <span class="comment">// prints a compact summary</span></div>
+<div class="ttc" id="anamespacegridfire_1_1rates_1_1weak_html_ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7"><div class="ttname"><a href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7">gridfire::rates::weak::WeakReactionType::ELECTRON_CAPTURE</a></div><div class="ttdeci">@ ELECTRON_CAPTURE</div><div class="ttdoc">e− capture: (Z, e−) -&gt; Z-1 + ν_e</div><div class="ttdef"><b>Definition</b> weak_types.h:55</div></div>
+<div class="ttc" id="astructgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry_html"><div class="ttname"><a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">gridfire::rates::weak::WeakReactionEntry</a></div><div class="ttdoc">A single weak-reaction data point (type, state, and log values).</div><div class="ttdef"><b>Definition</b> weak_types.h:200</div></div>
+</div><!-- fragment --> </dd></dl>
+</div><h2 class="groupheader">Friends And Related Symbol Documentation</h2>
+<a id="a5a2525ca7e7b2c812b1f67b3b0114aaf" name="a5a2525ca7e7b2c812b1f67b3b0114aaf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5a2525ca7e7b2c812b1f67b3b0114aaf">&#9670;&#160;</a></span>operator&lt;&lt;</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::ostream &amp; operator&lt;&lt; </td>
+          <td>(</td>
+          <td class="paramtype">std::ostream &amp;</td>          <td class="paramname"><span class="paramname"><em>os</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reaction</em></span>&#160;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel friend">friend</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="aa603395b65c8639f8d93f73b7d9bd61e" name="aa603395b65c8639f8d93f73b7d9bd61e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa603395b65c8639f8d93f73b7d9bd61e">&#9670;&#160;</a></span>log_neutrino_loss</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::WeakReactionEntry::log_neutrino_loss</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Corresponding log10(neutrino or antineutrino energy loss). </p>
+
+</div>
+</div>
+<a id="a90b6e47918fa750c28917ba6136c7880" name="a90b6e47918fa750c28917ba6136c7880"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a90b6e47918fa750c28917ba6136c7880">&#9670;&#160;</a></span>log_rate</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::WeakReactionEntry::log_rate</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Channel-specific log10(rate). </p>
+
+</div>
+</div>
+<a id="a17dde21438cabec9ae23a0d318c41a7a" name="a17dde21438cabec9ae23a0d318c41a7a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a17dde21438cabec9ae23a0d318c41a7a">&#9670;&#160;</a></span>log_rhoYe</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::WeakReactionEntry::log_rhoYe</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(rho*Ye). </p>
+
+</div>
+</div>
+<a id="a4a1cbc93d5e197a69a5a29a8cabc6498" name="a4a1cbc93d5e197a69a5a29a8cabc6498"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4a1cbc93d5e197a69a5a29a8cabc6498">&#9670;&#160;</a></span>mu_e</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::WeakReactionEntry::mu_e</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Electron chemical potential (MeV). </p>
+
+</div>
+</div>
+<a id="a549f4c9266722314f61d668d8507145c" name="a549f4c9266722314f61d668d8507145c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a549f4c9266722314f61d668d8507145c">&#9670;&#160;</a></span>T9</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::WeakReactionEntry::T9</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Temperature in GK. </p>
+
+</div>
+</div>
+<a id="ad0bb77849bda4934472675e196af87c8" name="ad0bb77849bda4934472675e196af87c8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad0bb77849bda4934472675e196af87c8">&#9670;&#160;</a></span>type</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a> gridfire::rates::weak::WeakReactionEntry::type</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Channel. </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak__types_8h.html">weak_types.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates.html">rates</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">weak</a></li><li class="navelem"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.js b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.js
new file mode 100644
index 00000000..842eb323
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.js
@@ -0,0 +1,10 @@
+var structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry =
+[
+    [ "operator<<", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a5a2525ca7e7b2c812b1f67b3b0114aaf", null ],
+    [ "log_neutrino_loss", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#aa603395b65c8639f8d93f73b7d9bd61e", null ],
+    [ "log_rate", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a90b6e47918fa750c28917ba6136c7880", null ],
+    [ "log_rhoYe", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a17dde21438cabec9ae23a0d318c41a7a", null ],
+    [ "mu_e", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a4a1cbc93d5e197a69a5a29a8cabc6498", null ],
+    [ "T9", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a549f4c9266722314f61d668d8507145c", null ],
+    [ "type", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#ad0bb77849bda4934472675e196af87c8", null ]
+];
\ No newline at end of file
diff --git a/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data-members.html b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data-members.html
new file mode 100644
index 00000000..9b8a2d61
--- /dev/null
+++ b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data-members.html
@@ -0,0 +1,124 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::solver::CVODESolverStrategy::CVODEUserData Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a3e089139de2ba47e96dfe22c14d24e9e">captured_exception</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a1fb4ca773aaad8d1d958a3a0e82d8edd">energy</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ac44d6bd0f4952d8bfdf487a09264872b">engine</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a41a5bc46358cb59373f62c791e1bc29c">networkSpecies</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#afdc510f8160693806737c4ab517058b8">rho</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ad7f3eb9caae25ef25357c41c23d6b392">solver_instance</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a0b27605ac3211a1805d7910c899bbcce">T9</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html
new file mode 100644
index 00000000..19dc3065
--- /dev/null
+++ b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html
@@ -0,0 +1,244 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::solver::CVODESolverStrategy::CVODEUserData Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::solver::CVODESolverStrategy::CVODEUserData Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>A helper struct to pass C++ context to C-style CVODE callbacks.  
+ <a href="#details">More...</a></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:ad7f3eb9caae25ef25357c41c23d6b392" id="r_ad7f3eb9caae25ef25357c41c23d6b392"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad7f3eb9caae25ef25357c41c23d6b392">solver_instance</a></td></tr>
+<tr class="separator:ad7f3eb9caae25ef25357c41c23d6b392"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac44d6bd0f4952d8bfdf487a09264872b" id="r_ac44d6bd0f4952d8bfdf487a09264872b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac44d6bd0f4952d8bfdf487a09264872b">engine</a></td></tr>
+<tr class="separator:ac44d6bd0f4952d8bfdf487a09264872b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0b27605ac3211a1805d7910c899bbcce" id="r_a0b27605ac3211a1805d7910c899bbcce"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0b27605ac3211a1805d7910c899bbcce">T9</a></td></tr>
+<tr class="separator:a0b27605ac3211a1805d7910c899bbcce"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afdc510f8160693806737c4ab517058b8" id="r_afdc510f8160693806737c4ab517058b8"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afdc510f8160693806737c4ab517058b8">rho</a></td></tr>
+<tr class="separator:afdc510f8160693806737c4ab517058b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1fb4ca773aaad8d1d958a3a0e82d8edd" id="r_a1fb4ca773aaad8d1d958a3a0e82d8edd"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1fb4ca773aaad8d1d958a3a0e82d8edd">energy</a></td></tr>
+<tr class="separator:a1fb4ca773aaad8d1d958a3a0e82d8edd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a41a5bc46358cb59373f62c791e1bc29c" id="r_a41a5bc46358cb59373f62c791e1bc29c"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a41a5bc46358cb59373f62c791e1bc29c">networkSpecies</a></td></tr>
+<tr class="separator:a41a5bc46358cb59373f62c791e1bc29c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3e089139de2ba47e96dfe22c14d24e9e" id="r_a3e089139de2ba47e96dfe22c14d24e9e"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html">exceptions::StaleEngineTrigger</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3e089139de2ba47e96dfe22c14d24e9e">captured_exception</a> = nullptr</td></tr>
+<tr class="separator:a3e089139de2ba47e96dfe22c14d24e9e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>A helper struct to pass C++ context to C-style CVODE callbacks. </p>
+<p>Carries pointers back to the solver instance and engine, the current thermodynamic state, energy accumulator, and a slot to capture a copy of <a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html">exceptions::StaleEngineTrigger</a> from RHS evaluation. The RHS wrapper treats this as a recoverable failure and returns 1 to CVODE, then the driver loop inspects and rethrows. </p>
+</div><h2 class="groupheader">Member Data Documentation</h2>
+<a id="a3e089139de2ba47e96dfe22c14d24e9e" name="a3e089139de2ba47e96dfe22c14d24e9e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3e089139de2ba47e96dfe22c14d24e9e">&#9670;&#160;</a></span>captured_exception</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html">exceptions::StaleEngineTrigger</a>&gt; gridfire::solver::CVODESolverStrategy::CVODEUserData::captured_exception = nullptr</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a1fb4ca773aaad8d1d958a3a0e82d8edd" name="a1fb4ca773aaad8d1d958a3a0e82d8edd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1fb4ca773aaad8d1d958a3a0e82d8edd">&#9670;&#160;</a></span>energy</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::solver::CVODESolverStrategy::CVODEUserData::energy</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ac44d6bd0f4952d8bfdf487a09264872b" name="ac44d6bd0f4952d8bfdf487a09264872b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac44d6bd0f4952d8bfdf487a09264872b">&#9670;&#160;</a></span>engine</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>* gridfire::solver::CVODESolverStrategy::CVODEUserData::engine</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a41a5bc46358cb59373f62c791e1bc29c" name="a41a5bc46358cb59373f62c791e1bc29c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a41a5bc46358cb59373f62c791e1bc29c">&#9670;&#160;</a></span>networkSpecies</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt;fourdst::atomic::Species&gt;* gridfire::solver::CVODESolverStrategy::CVODEUserData::networkSpecies</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="afdc510f8160693806737c4ab517058b8" name="afdc510f8160693806737c4ab517058b8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afdc510f8160693806737c4ab517058b8">&#9670;&#160;</a></span>rho</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::solver::CVODESolverStrategy::CVODEUserData::rho</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ad7f3eb9caae25ef25357c41c23d6b392" name="ad7f3eb9caae25ef25357c41c23d6b392"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad7f3eb9caae25ef25357c41c23d6b392">&#9670;&#160;</a></span>solver_instance</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a>* gridfire::solver::CVODESolverStrategy::CVODEUserData::solver_instance</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a0b27605ac3211a1805d7910c899bbcce" name="a0b27605ac3211a1805d7910c899bbcce"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0b27605ac3211a1805d7910c899bbcce">&#9670;&#160;</a></span>T9</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::solver::CVODESolverStrategy::CVODEUserData::T9</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/solver/strategies/<a class="el" href="_c_v_o_d_e__solver__strategy_8h.html">CVODE_solver_strategy.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1solver.html">solver</a></li><li class="navelem"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a></li><li class="navelem"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">CVODEUserData</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.js b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.js
new file mode 100644
index 00000000..a4c2c664
--- /dev/null
+++ b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.js
@@ -0,0 +1,10 @@
+var structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data =
+[
+    [ "captured_exception", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a3e089139de2ba47e96dfe22c14d24e9e", null ],
+    [ "energy", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a1fb4ca773aaad8d1d958a3a0e82d8edd", null ],
+    [ "engine", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ac44d6bd0f4952d8bfdf487a09264872b", null ],
+    [ "networkSpecies", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a41a5bc46358cb59373f62c791e1bc29c", null ],
+    [ "rho", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#afdc510f8160693806737c4ab517058b8", null ],
+    [ "solver_instance", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ad7f3eb9caae25ef25357c41c23d6b392", null ],
+    [ "T9", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a0b27605ac3211a1805d7910c899bbcce", null ]
+];
\ No newline at end of file
diff --git a/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context-members.html b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context-members.html
new file mode 100644
index 00000000..d9bb98ec
--- /dev/null
+++ b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context-members.html
@@ -0,0 +1,129 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::solver::CVODESolverStrategy::TimestepContext Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#ae3c6320ce7a8f41c9ae36c42d62b4204">describe</a>() const override</td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a6442d15673e6385bb6fdd11e1179c487">dt</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#af8c233f893bf740e81c5254d84534067">engine</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a92187c15b7bcb90adebecc87e1436a">last_step_time</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a75d7e32c9df3d8a047069fe2d64cd089">networkSpecies</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a51e86d2721053055d8479662b864e367">num_steps</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a25afbc9f8a907304992e144dfa3529">rho</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#aaae3c42b9172be4d501f022e67f5a6f6">state</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a0b39f0d207181840efacb64417b492ae">t</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a25743a21ed801ed4288309f35dc9a289">T9</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a406b36ce5f192c855eb3c8dcf0fde0bd">TimestepContext</a>(double t, const N_Vector &amp;state, double dt, double last_step_time, double t9, double rho, size_t num_steps, const DynamicEngine &amp;engine, const std::vector&lt; fourdst::atomic::Species &gt; &amp;networkSpecies)</td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_solver_context_base.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8">~SolverContextBase</a>()=default</td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1_solver_context_base.html">gridfire::solver::SolverContextBase</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html
new file mode 100644
index 00000000..5fea06c5
--- /dev/null
+++ b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html
@@ -0,0 +1,417 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::solver::CVODESolverStrategy::TimestepContext Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::solver::CVODESolverStrategy::TimestepContext Struct Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Immutable view of the current integration state passed to callbacks.  
+ <a href="#details">More...</a></p>
+
+<p><code>#include &lt;CVODE_solver_strategy.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::solver::CVODESolverStrategy::TimestepContext:</div>
+<div class="dyncontent">
+ <div class="center">
+  <img src="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.png" usemap="#gridfire::solver::CVODESolverStrategy::TimestepContext_map" alt=""/>
+  <map id="gridfire::solver::CVODESolverStrategy::TimestepContext_map" name="gridfire::solver::CVODESolverStrategy::TimestepContext_map">
+<area href="structgridfire_1_1solver_1_1_solver_context_base.html" title="Base class for solver callback contexts." alt="gridfire::solver::SolverContextBase" shape="rect" coords="0,0,326,24"/>
+  </map>
+</div></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a406b36ce5f192c855eb3c8dcf0fde0bd" id="r_a406b36ce5f192c855eb3c8dcf0fde0bd"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a406b36ce5f192c855eb3c8dcf0fde0bd">TimestepContext</a> (double <a class="el" href="#a0b39f0d207181840efacb64417b492ae">t</a>, const N_Vector &amp;<a class="el" href="#aaae3c42b9172be4d501f022e67f5a6f6">state</a>, double <a class="el" href="#a6442d15673e6385bb6fdd11e1179c487">dt</a>, double <a class="el" href="#a4a92187c15b7bcb90adebecc87e1436a">last_step_time</a>, double t9, double <a class="el" href="#a4a25afbc9f8a907304992e144dfa3529">rho</a>, size_t <a class="el" href="#a51e86d2721053055d8479662b864e367">num_steps</a>, const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;<a class="el" href="#af8c233f893bf740e81c5254d84534067">engine</a>, const std::vector&lt; fourdst::atomic::Species &gt; &amp;<a class="el" href="#a75d7e32c9df3d8a047069fe2d64cd089">networkSpecies</a>)</td></tr>
+<tr class="memdesc:a406b36ce5f192c855eb3c8dcf0fde0bd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a context snapshot.  <br /></td></tr>
+<tr class="separator:a406b36ce5f192c855eb3c8dcf0fde0bd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae3c6320ce7a8f41c9ae36c42d62b4204" id="r_ae3c6320ce7a8f41c9ae36c42d62b4204"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::tuple&lt; std::string, std::string &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae3c6320ce7a8f41c9ae36c42d62b4204">describe</a> () const override</td></tr>
+<tr class="memdesc:ae3c6320ce7a8f41c9ae36c42d62b4204"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable description of the context fields.  <br /></td></tr>
+<tr class="separator:ae3c6320ce7a8f41c9ae36c42d62b4204"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_structgridfire_1_1solver_1_1_solver_context_base"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_structgridfire_1_1solver_1_1_solver_context_base')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="structgridfire_1_1solver_1_1_solver_context_base.html">gridfire::solver::SolverContextBase</a></td></tr>
+<tr class="memitem:ab1abf9e5ff7f53a6cebe5e00ea5fc0c8 inherit pub_methods_structgridfire_1_1solver_1_1_solver_context_base" id="r_ab1abf9e5ff7f53a6cebe5e00ea5fc0c8"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1_solver_context_base.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8">~SolverContextBase</a> ()=default</td></tr>
+<tr class="separator:ab1abf9e5ff7f53a6cebe5e00ea5fc0c8 inherit pub_methods_structgridfire_1_1solver_1_1_solver_context_base"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a0b39f0d207181840efacb64417b492ae" id="r_a0b39f0d207181840efacb64417b492ae"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0b39f0d207181840efacb64417b492ae">t</a></td></tr>
+<tr class="memdesc:a0b39f0d207181840efacb64417b492ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Current integration time [s].  <br /></td></tr>
+<tr class="separator:a0b39f0d207181840efacb64417b492ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aaae3c42b9172be4d501f022e67f5a6f6" id="r_aaae3c42b9172be4d501f022e67f5a6f6"><td class="memItemLeft" align="right" valign="top">const N_Vector &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aaae3c42b9172be4d501f022e67f5a6f6">state</a></td></tr>
+<tr class="memdesc:aaae3c42b9172be4d501f022e67f5a6f6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Current CVODE state vector (N_Vector).  <br /></td></tr>
+<tr class="separator:aaae3c42b9172be4d501f022e67f5a6f6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6442d15673e6385bb6fdd11e1179c487" id="r_a6442d15673e6385bb6fdd11e1179c487"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6442d15673e6385bb6fdd11e1179c487">dt</a></td></tr>
+<tr class="memdesc:a6442d15673e6385bb6fdd11e1179c487"><td class="mdescLeft">&#160;</td><td class="mdescRight">Last step size [s].  <br /></td></tr>
+<tr class="separator:a6442d15673e6385bb6fdd11e1179c487"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4a92187c15b7bcb90adebecc87e1436a" id="r_a4a92187c15b7bcb90adebecc87e1436a"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4a92187c15b7bcb90adebecc87e1436a">last_step_time</a></td></tr>
+<tr class="memdesc:a4a92187c15b7bcb90adebecc87e1436a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Time at last callback [s].  <br /></td></tr>
+<tr class="separator:a4a92187c15b7bcb90adebecc87e1436a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a25743a21ed801ed4288309f35dc9a289" id="r_a25743a21ed801ed4288309f35dc9a289"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a25743a21ed801ed4288309f35dc9a289">T9</a></td></tr>
+<tr class="memdesc:a25743a21ed801ed4288309f35dc9a289"><td class="mdescLeft">&#160;</td><td class="mdescRight">Temperature in GK.  <br /></td></tr>
+<tr class="separator:a25743a21ed801ed4288309f35dc9a289"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4a25afbc9f8a907304992e144dfa3529" id="r_a4a25afbc9f8a907304992e144dfa3529"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4a25afbc9f8a907304992e144dfa3529">rho</a></td></tr>
+<tr class="memdesc:a4a25afbc9f8a907304992e144dfa3529"><td class="mdescLeft">&#160;</td><td class="mdescRight">Density [g cm^-3].  <br /></td></tr>
+<tr class="separator:a4a25afbc9f8a907304992e144dfa3529"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a51e86d2721053055d8479662b864e367" id="r_a51e86d2721053055d8479662b864e367"><td class="memItemLeft" align="right" valign="top">const size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a51e86d2721053055d8479662b864e367">num_steps</a></td></tr>
+<tr class="memdesc:a51e86d2721053055d8479662b864e367"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of CVODE steps taken so far.  <br /></td></tr>
+<tr class="separator:a51e86d2721053055d8479662b864e367"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af8c233f893bf740e81c5254d84534067" id="r_af8c233f893bf740e81c5254d84534067"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af8c233f893bf740e81c5254d84534067">engine</a></td></tr>
+<tr class="memdesc:af8c233f893bf740e81c5254d84534067"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reference to the engine.  <br /></td></tr>
+<tr class="separator:af8c233f893bf740e81c5254d84534067"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a75d7e32c9df3d8a047069fe2d64cd089" id="r_a75d7e32c9df3d8a047069fe2d64cd089"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a75d7e32c9df3d8a047069fe2d64cd089">networkSpecies</a></td></tr>
+<tr class="memdesc:a75d7e32c9df3d8a047069fe2d64cd089"><td class="mdescLeft">&#160;</td><td class="mdescRight">Species layout.  <br /></td></tr>
+<tr class="separator:a75d7e32c9df3d8a047069fe2d64cd089"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Immutable view of the current integration state passed to callbacks. </p>
+<p>Fields capture CVODE time/state, step size, thermodynamic state, the engine reference, and the list of network species used to interpret the state vector layout. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a406b36ce5f192c855eb3c8dcf0fde0bd" name="a406b36ce5f192c855eb3c8dcf0fde0bd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a406b36ce5f192c855eb3c8dcf0fde0bd">&#9670;&#160;</a></span>TimestepContext()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::solver::CVODESolverStrategy::TimestepContext::TimestepContext </td>
+          <td>(</td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>t</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const N_Vector &amp;</td>          <td class="paramname"><span class="paramname"><em>state</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>dt</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>last_step_time</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>t9</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t</td>          <td class="paramname"><span class="paramname"><em>num_steps</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>engine</em></span>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>networkSpecies</em></span>&#160;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Construct a context snapshot. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ae3c6320ce7a8f41c9ae36c42d62b4204" name="ae3c6320ce7a8f41c9ae36c42d62b4204"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae3c6320ce7a8f41c9ae36c42d62b4204">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; std::tuple&lt; std::string, std::string &gt; &gt; gridfire::solver::CVODESolverStrategy::TimestepContext::describe </td>
+          <td>(</td>
+          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Human-readable description of the context fields. </p>
+
+<p>Implements <a class="el" href="structgridfire_1_1solver_1_1_solver_context_base.html#a9cbef3cabc8524e542613ee50d8860c6">gridfire::solver::SolverContextBase</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a6442d15673e6385bb6fdd11e1179c487" name="a6442d15673e6385bb6fdd11e1179c487"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6442d15673e6385bb6fdd11e1179c487">&#9670;&#160;</a></span>dt</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const double gridfire::solver::CVODESolverStrategy::TimestepContext::dt</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Last step size [s]. </p>
+
+</div>
+</div>
+<a id="af8c233f893bf740e81c5254d84534067" name="af8c233f893bf740e81c5254d84534067"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af8c233f893bf740e81c5254d84534067">&#9670;&#160;</a></span>engine</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>&amp; gridfire::solver::CVODESolverStrategy::TimestepContext::engine</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Reference to the engine. </p>
+
+</div>
+</div>
+<a id="a4a92187c15b7bcb90adebecc87e1436a" name="a4a92187c15b7bcb90adebecc87e1436a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4a92187c15b7bcb90adebecc87e1436a">&#9670;&#160;</a></span>last_step_time</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const double gridfire::solver::CVODESolverStrategy::TimestepContext::last_step_time</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Time at last callback [s]. </p>
+
+</div>
+</div>
+<a id="a75d7e32c9df3d8a047069fe2d64cd089" name="a75d7e32c9df3d8a047069fe2d64cd089"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a75d7e32c9df3d8a047069fe2d64cd089">&#9670;&#160;</a></span>networkSpecies</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt;fourdst::atomic::Species&gt;&amp; gridfire::solver::CVODESolverStrategy::TimestepContext::networkSpecies</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Species layout. </p>
+
+</div>
+</div>
+<a id="a51e86d2721053055d8479662b864e367" name="a51e86d2721053055d8479662b864e367"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a51e86d2721053055d8479662b864e367">&#9670;&#160;</a></span>num_steps</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const size_t gridfire::solver::CVODESolverStrategy::TimestepContext::num_steps</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Number of CVODE steps taken so far. </p>
+
+</div>
+</div>
+<a id="a4a25afbc9f8a907304992e144dfa3529" name="a4a25afbc9f8a907304992e144dfa3529"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4a25afbc9f8a907304992e144dfa3529">&#9670;&#160;</a></span>rho</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const double gridfire::solver::CVODESolverStrategy::TimestepContext::rho</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Density [g cm^-3]. </p>
+
+</div>
+</div>
+<a id="aaae3c42b9172be4d501f022e67f5a6f6" name="aaae3c42b9172be4d501f022e67f5a6f6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaae3c42b9172be4d501f022e67f5a6f6">&#9670;&#160;</a></span>state</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const N_Vector&amp; gridfire::solver::CVODESolverStrategy::TimestepContext::state</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Current CVODE state vector (N_Vector). </p>
+
+</div>
+</div>
+<a id="a0b39f0d207181840efacb64417b492ae" name="a0b39f0d207181840efacb64417b492ae"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0b39f0d207181840efacb64417b492ae">&#9670;&#160;</a></span>t</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const double gridfire::solver::CVODESolverStrategy::TimestepContext::t</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Current integration time [s]. </p>
+
+</div>
+</div>
+<a id="a25743a21ed801ed4288309f35dc9a289" name="a25743a21ed801ed4288309f35dc9a289"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a25743a21ed801ed4288309f35dc9a289">&#9670;&#160;</a></span>T9</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const double gridfire::solver::CVODESolverStrategy::TimestepContext::T9</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Temperature in GK. </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following files:<ul>
+<li>src/include/gridfire/solver/strategies/<a class="el" href="_c_v_o_d_e__solver__strategy_8h.html">CVODE_solver_strategy.h</a></li>
+<li>src/lib/solver/strategies/<a class="el" href="_c_v_o_d_e__solver__strategy_8cpp.html">CVODE_solver_strategy.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1solver.html">solver</a></li><li class="navelem"><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a></li><li class="navelem"><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">TimestepContext</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.js b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.js
new file mode 100644
index 00000000..22021c92
--- /dev/null
+++ b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.js
@@ -0,0 +1,14 @@
+var structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context =
+[
+    [ "TimestepContext", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a406b36ce5f192c855eb3c8dcf0fde0bd", null ],
+    [ "describe", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#ae3c6320ce7a8f41c9ae36c42d62b4204", null ],
+    [ "dt", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a6442d15673e6385bb6fdd11e1179c487", null ],
+    [ "engine", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#af8c233f893bf740e81c5254d84534067", null ],
+    [ "last_step_time", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a92187c15b7bcb90adebecc87e1436a", null ],
+    [ "networkSpecies", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a75d7e32c9df3d8a047069fe2d64cd089", null ],
+    [ "num_steps", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a51e86d2721053055d8479662b864e367", null ],
+    [ "rho", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a25afbc9f8a907304992e144dfa3529", null ],
+    [ "state", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#aaae3c42b9172be4d501f022e67f5a6f6", null ],
+    [ "t", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a0b39f0d207181840efacb64417b492ae", null ],
+    [ "T9", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a25743a21ed801ed4288309f35dc9a289", null ]
+];
\ No newline at end of file
diff --git a/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.png b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.png
new file mode 100644
index 0000000000000000000000000000000000000000..a9defd0814be93b72a6715232dcd064fad213794
GIT binary patch
literal 1162
zcmeAS@N?(olHy`uVBq!ia0y~yU~~hr12~w0WY9;Q4?s#fz$e7@|Ns9$=8HF9OZyKk
zw=mEwkeGhv#e)YAfa0cS!<GQ$I7@>3f*F8(FfeDDeT9L6Mby*9F{Fa=?cCdWU$uBz
z+B-we{<i-Z*Us=vV3OYR`&psk*_T=*lIkUXi{0LqyD;~*S^tKKDIF^I;R!09+nJO-
zcZo`PURry=V^ZGTUc;;Pnordy*<84!Wc%-&Z}e*B$HzZkes@Q4(w}|*0?q99s+|m8
zyC&}as)LQ0>01v}?8;U7IWzCzj^}qjM_u}`^>gKyzbR+#dxjjY_P@=1c3JAFQ&$r1
zt&NjkH+|9u*5rA)cN9GP-yQhzsp5O~e^bTjzg=$KFGzp;Iae-r#w@E#7KU{tR(0-e
z_gXHl>c4tI<)-0mz4QJ)>^*x6BM)CYcIbb3V$Q1S<IAQr6_u&GzP(V=Xc#@yJhe)4
z|MK^L>Tgz@O3UDTtT|`Ky3HHy_rJB=cZb8XXk~QvVow&M!Vu~3+jj0xgnNW9YrYZt
zeeYRaMedrpyF?c6yS8=jHd(Em6K}6Kv@xF>`LuV<++R;8o1TgO-)vP{E#mp<{L6E<
zJSNqLn9IJh_xrfb*>_TXMB_x2yIeggFT-Gg`1Qb!+}mQew&fOcFx2hZ$DqK%Ajj&)
z@Zr^KZ40J`;6_1)JyiibeGCtR6IdFgMFbcRtUbWNkOx#!pl!g^5DipthpUI-L0AF{
z129$?c8E$)P09TR!=+Q4G?zXRoTSpK^0JuK&9g|`z-v-;W8fs9rIVgq6M1a+<<In>
zx=Blz*XqveT_dq~-R~2x>-SdHzq8#Cvpw>|Ea7T<TeDe#88wz0POlKV`J<v(H}txo
ziTBhW$EB?|L~W1#@F;HHyR9mwuWEL772aR{eCv{j+4i4a{9gI)>b_*tWwvwgtu{}Q
zYBIgfee+<&*1UQDzv=!C)wi6Ym#qEw&%vzRbo<45f6Wd*3-&!E*0cV4<;71Ci#5J`
zZrcCw+%0p<V#de&EMJ#OFJ@Lh_Oa_DYl>X|%&6E`?Y}E+-B#cG`|itD_maH-b8~b;
zH!VAq6`P$RHv6~TwWfo=63WDrt=D_rdY_P!l_#F3$y)m}pK0UQv{}8IJC?nU@_Aog
zY2IdHb0p%{tedB`C3aWJr##Nwaam?h&&9I-!==`XCq~J}B)?J0OkcmbutFm1@tS=;
z{H5EAeQ(c|S;qFjb9vml-Nzzo_cs}Oe!JdoYx_Fw<*oO}{9^s;;wRtwc9TyuXy;-n
zzNKPU{HNZ0rY3)HbLr-ZZ>MjYI4wX*NZIZ7%Cm3w2A{7vIpOv6?%abGmfI$M@lHM6
zt`d7aee$nc8lL-O+>gdgI`{POjNq6_b-Q=1)APLk^oWM1qUSFMSnP!*Oi|g+v{+^5
k*8?+xycSLgDtckhV$S1{SgmjmSZXkMy85}Sb4q9e09&;(Hvj+t

literal 0
HcmV?d00001

diff --git a/docs/html/structgridfire_1_1solver_1_1_solver_context_base.html b/docs/html/structgridfire_1_1solver_1_1_solver_context_base.html
index 348ee77d..a40c39da 100644
--- a/docs/html/structgridfire_1_1solver_1_1_solver_context_base.html
+++ b/docs/html/structgridfire_1_1solver_1_1_solver_context_base.html
@@ -116,7 +116,7 @@ Inheritance diagram for gridfire::solver::SolverContextBase:</div>
  <div class="center">
   <img src="structgridfire_1_1solver_1_1_solver_context_base.png" usemap="#gridfire::solver::SolverContextBase_map" alt=""/>
   <map id="gridfire::solver::SolverContextBase_map" name="gridfire::solver::SolverContextBase_map">
-<area href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html" title="Context for the timestep callback function for the DirectNetworkSolver." alt="gridfire::solver::DirectNetworkSolver::TimestepContext" shape="rect" coords="0,56,314,80"/>
+<area href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html" title="Immutable view of the current integration state passed to callbacks." alt="gridfire::solver::CVODESolverStrategy::TimestepContext" shape="rect" coords="0,56,326,80"/>
   </map>
 </div></div>
 <table class="memberdecls">
@@ -176,7 +176,7 @@ Public Member Functions</h2></td></tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
+<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -185,7 +185,7 @@ Public Member Functions</h2></td></tr>
 <dl class="section return"><dt>Returns</dt><dd>A vector of tuples, each containing a string for the parameters name and a string for its type.</dd></dl>
 <p>This method should be overridden by derived classes to provide a description of the context that will be passed to the callback function. The intent of this method is that an end user can investigate the context that will be passed to the callback function, and use this information to craft their own callback function. </p>
 
-<p>Implemented in <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#ab032139a719e551f888ae012ef8018ee">gridfire::solver::DirectNetworkSolver::TimestepContext</a>.</p>
+<p>Implemented in <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#ae3c6320ce7a8f41c9ae36c42d62b4204">gridfire::solver::CVODESolverStrategy::TimestepContext</a>.</p>
 
 </div>
 </div>
diff --git a/docs/html/structgridfire_1_1solver_1_1_solver_context_base.png b/docs/html/structgridfire_1_1solver_1_1_solver_context_base.png
index 2583b39c5fdb3cbfa62780085e2d7cd3470f7822..78e2ccce226be5f4ad72141f1f5618e21b7037ee 100644
GIT binary patch
delta 1117
zcmey$(aovY8Q|y6%O%Cdz`(%k>ERN@z`*DRWCw6C1IeI|Iv*w~+SiMDx;TbZFutAp
zuy3;!kBfTqmRaBHAKhm1oFm}0{n_rUt#PFh9DSYsGQahMyfmi-dC4hy26;@n7oIRh
zWjoVim7SszswdYT(D2N=+gtek+n?z{b(59|`|8fq{cvl`Rx86goAt7xlm0dS3pBF}
z*Y%t}D{}4oRR=pW(@hUn?9821|7Bj@!5z=<evZ0SaQCOpE?ddZx}8}Sx3}0{$cb8Z
z#)tRW-K@U_d#AMMN_@`Q%;Wj#1z*qWuJ5I9_p3cAny>QP`cCBUn%VB^%a-+-bX(Mw
zSk$?<-D|nHs{iT<m7A8c_0H@2@Jm!besuWSu|xlN8<<_)n;h)rXt}$2QCXJN!5M4o
z&&)R3+jIYN`M>=+ds2!s_>Ko#7|cyiuCKdY{HI8H%953NYkSoMmn>O)Ysal`l`eJ%
zEDU51<!yYQ`|fad^4lv*CBAN5_jc>sfRnv<>Utk;eR)DFKjrO}*R$3n-uuP>>dM=|
zDNF2^TW2p;`5Sn*WW|4rqqq6Cs{Bo4b@MFJHt?EMAKe%@=?+)Vq$k&ylf5)sgS<{E
zGW;m{%izGlV8hkJ@Zjos{{j|<<xI*96<-%f$S@vQet?6)Ttk7WA-YkJ0jQJVL0AF{
z!*-y89ikG92i5|m^H|*&3bYM~QBqHoG4~q^Bd0w*{B^U==}$KgIZaZWR1@DgQROaI
zkIKui1Qk!9?Vh_#kIZ<rf66Ce&v_Yn6XoiUX6${Z{Q7^@=Gr{z8NYI6_HFBU%RD)P
zP5;)`IXB*(-<(r3BSv{oecyt@&`0+7ZZyukf9+v+b>+_MDmPa|pI$BTeQ#Bqx751d
z6WzBj-xdD5@9K<iCAapNr${xKUgy5q{P9fwy!~r+*RPH%(uh44_UmW!)m!K4-0rTs
z%`@BIlr!33-TKX!KSeCo_};l?|KYh?^NXIb_WXW!=C7HXdbdSic#rmkLYuU#`q&`*
zJLg{;Mtwc~-Y>q|<@mS#CyxcGW^0}K6Q%q(XV14}U5kkMXWk{{JU8|HE#2dL_U$3v
zr3>```zma^$FsRm<l=?(N4M-fy}QukaB$DkwKMnDuqK<o@6Fl6Q$C|vKY7dD$5-;x
zOO}MOKbP3;aqH&ioHz1)TMI+t+uC>C-nr~;Js)2%^M^&j{(sLIUfa6A$#CMg>+QBS
zuaA}fJhUKq`sDl9mu#!u=G+?cZbh5(O4in}mlMCK$=}o7fAhpQ@7o^U8oZs#ZnsyS
zeX}>X|Jo$Q>-y=py9x_(JU@A-o@V#lw{E+dY?iWT-Oh7emY#8^+YOgnc-HOSwa#zS
z`qP~gRh(6ff3|_*PE^A4(%J(alYl8_QpxK^U~H>y(K-F-LcL^@FgNq5&BuTx27{-o
KpUXO@geCwjy&d5I

literal 1141
zcmeAS@N?(olHy`uVBq!ia0y~yV6+0V12~w0<h~ZqXFy6iz$e7@|Ns9$=8HF9OZyKk
zw=mEwkeGhv#e)YAfa0cS!<GQ$I7@>3f*F8(FfeDDeT9L6g~8LsF{Fa=?cCRWpS1*7
zX1hgw{cZozGpCr{dY;Su&MA>gHyO(19c8E&bmH*iP`tzHI7!BHSNrP8D#GjhCi(2J
z@-%w*O6BB{=T~Ik+Wc>wFi$1(VCIp}OuPAV7mFS2fBx2P%98$1AJ<g(g-p`3?7nqx
zYJ+Qrc<G{dMJrWa>gBJp{`C6i+{?Mq4?}j@hd!*{G)436)xMKUFT_06*%DOkk}ErX
z{hS$*v8!TvohRk&S)M2T)NtD4%Ra{c`GWpR)?NMhGF{7-bM3i~G=b#hmp^?s`j}g4
z`uC64s+6eTFFyTLDhasG{@m=<W<Bfwb){!H@BTb-+vff0lZsn;Yy+n+T4lboO0WL=
zyC33_<u8*h9vqi7<Fq}$t1f?A^_QooeI|+3yjZhZEQU)e^ZBK?>c!7GcX_@DDOmk$
z$EtlF)@YmO*v0(Xyn3(l?L~8#U*1~7wB9*AF!SRn-rc<``Fu|QwZFgNt=Z%y@{f$u
z=c@db$<Mzr-}HMUuePUsCr0o&$8soID7F*`GyI7A$8dnLVfPLzh7BLSKYzz?pkXyL
z12=#1J3fYYk6$qy=;&r<5MIZ}01SHugNHzY7N9(B1n#fZJ0`Jz+J1@TKVbr%mlRJ{
z@35L=^6-_%rIyvop2F+;RD6A|wtmuY`QkE(`<&9D&-t=nH15VvxxV_^r4@bO^mgB?
zvXlP*#P#+MrFRu}r+3-tPO^C%a<}rp=6<~=F?YKUZrlF(VB9L}YtO-Hpc$A3rhc^y
zTWN7`wd~#H7i=Exo4NPx-r2i8ZTztE?xlP8+~f|GUUzj}6;m3=n@~MJDpNZDaS(TP
zOxW~k|2Zt>PH#Asaw4F%Exxp7uk7)(BA57(D_h?_jSSE7-?i>auF$jM70aTgE!BVb
z`s=H#UmrtCcBk9@E1d0X6>+AS=j!spAfbP)>t3&sPF62vFRhjLExH$Yea^zWKR%o3
z-_Bi{$DeuS>D)VOK6~A@I8b@rxKwk+9QM0@5i4H5lH8P6)V<}gyx+CVYo`CZcCA_=
zlQ;S8@1*P9YhGX48@%=0u78O(ueC0xJn*>gQNQktS&qWZi@e!3tdb|@ty(X>%kJ)m
z&71S~>AmHenw?Q}_}SZw%e|_XZ*{fYd&%_r@~Znjt7f?cy*p7Rm;1DcdH;p4F0r+T
zr@b}?>N+<0M$zGAHx}h>QuX|#Zs1#E@!I3l^9ui1uhdC@EboQ5PvZ03*8z(xSnM5f
jj_onDGCWo>`9Fi@K91_H(v_aT0)oNQ)z4*}Q$iB}YJxUq

diff --git a/docs/html/structgridfire_1_1trigger_1_1_trigger_result-members.html b/docs/html/structgridfire_1_1trigger_1_1_trigger_result-members.html
new file mode 100644
index 00000000..b7168da8
--- /dev/null
+++ b/docs/html/structgridfire_1_1trigger_1_1_trigger_result-members.html
@@ -0,0 +1,121 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1trigger_1_1_trigger_result.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::trigger::TriggerResult Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">gridfire::trigger::TriggerResult</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html#a7cf4d21d3cd3e53b62736932b44072cd">causes</a></td><td class="entry"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">gridfire::trigger::TriggerResult</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html#aaf99ffdeb73f5e792e61c4cca68aa157">description</a></td><td class="entry"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">gridfire::trigger::TriggerResult</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html#a1f27dd6d5cca43956812ec78cfb7be2d">name</a></td><td class="entry"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">gridfire::trigger::TriggerResult</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html#a372af12d705b623075c41872f3ec96e1">value</a></td><td class="entry"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">gridfire::trigger::TriggerResult</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1trigger_1_1_trigger_result.html b/docs/html/structgridfire_1_1trigger_1_1_trigger_result.html
new file mode 100644
index 00000000..1f524aaf
--- /dev/null
+++ b/docs/html/structgridfire_1_1trigger_1_1_trigger_result.html
@@ -0,0 +1,204 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::trigger::TriggerResult Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('structgridfire_1_1trigger_1_1_trigger_result.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1trigger_1_1_trigger_result-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::TriggerResult Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;trigger_result.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a1f27dd6d5cca43956812ec78cfb7be2d" id="r_a1f27dd6d5cca43956812ec78cfb7be2d"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1f27dd6d5cca43956812ec78cfb7be2d">name</a></td></tr>
+<tr class="memdesc:a1f27dd6d5cca43956812ec78cfb7be2d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Short identifier for the condition (e.g., "Temperature Rise").  <br /></td></tr>
+<tr class="separator:a1f27dd6d5cca43956812ec78cfb7be2d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aaf99ffdeb73f5e792e61c4cca68aa157" id="r_aaf99ffdeb73f5e792e61c4cca68aa157"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aaf99ffdeb73f5e792e61c4cca68aa157">description</a></td></tr>
+<tr class="memdesc:aaf99ffdeb73f5e792e61c4cca68aa157"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable reason summarizing the outcome at this node.  <br /></td></tr>
+<tr class="separator:aaf99ffdeb73f5e792e61c4cca68aa157"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a372af12d705b623075c41872f3ec96e1" id="r_a372af12d705b623075c41872f3ec96e1"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a372af12d705b623075c41872f3ec96e1">value</a></td></tr>
+<tr class="memdesc:a372af12d705b623075c41872f3ec96e1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluation result for this node (true/false).  <br /></td></tr>
+<tr class="separator:a372af12d705b623075c41872f3ec96e1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7cf4d21d3cd3e53b62736932b44072cd" id="r_a7cf4d21d3cd3e53b62736932b44072cd"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7cf4d21d3cd3e53b62736932b44072cd">causes</a></td></tr>
+<tr class="memdesc:a7cf4d21d3cd3e53b62736932b44072cd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sub-reasons for composite triggers.  <br /></td></tr>
+<tr class="separator:a7cf4d21d3cd3e53b62736932b44072cd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a7cf4d21d3cd3e53b62736932b44072cd" name="a7cf4d21d3cd3e53b62736932b44072cd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7cf4d21d3cd3e53b62736932b44072cd">&#9670;&#160;</a></span>causes</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;<a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a>&gt; gridfire::trigger::TriggerResult::causes</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Sub-reasons for composite triggers. </p>
+
+</div>
+</div>
+<a id="aaf99ffdeb73f5e792e61c4cca68aa157" name="aaf99ffdeb73f5e792e61c4cca68aa157"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaf99ffdeb73f5e792e61c4cca68aa157">&#9670;&#160;</a></span>description</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::trigger::TriggerResult::description</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Human-readable reason summarizing the outcome at this node. </p>
+
+</div>
+</div>
+<a id="a1f27dd6d5cca43956812ec78cfb7be2d" name="a1f27dd6d5cca43956812ec78cfb7be2d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1f27dd6d5cca43956812ec78cfb7be2d">&#9670;&#160;</a></span>name</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::trigger::TriggerResult::name</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Short identifier for the condition (e.g., "Temperature Rise"). </p>
+
+</div>
+</div>
+<a id="a372af12d705b623075c41872f3ec96e1" name="a372af12d705b623075c41872f3ec96e1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a372af12d705b623075c41872f3ec96e1">&#9670;&#160;</a></span>value</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::trigger::TriggerResult::value</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Evaluation result for this node (true/false). </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/trigger/<a class="el" href="trigger__result_8h.html">trigger_result.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li><li class="navelem"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1trigger_1_1_trigger_result.js b/docs/html/structgridfire_1_1trigger_1_1_trigger_result.js
new file mode 100644
index 00000000..74906422
--- /dev/null
+++ b/docs/html/structgridfire_1_1trigger_1_1_trigger_result.js
@@ -0,0 +1,7 @@
+var structgridfire_1_1trigger_1_1_trigger_result =
+[
+    [ "causes", "structgridfire_1_1trigger_1_1_trigger_result.html#a7cf4d21d3cd3e53b62736932b44072cd", null ],
+    [ "description", "structgridfire_1_1trigger_1_1_trigger_result.html#aaf99ffdeb73f5e792e61c4cca68aa157", null ],
+    [ "name", "structgridfire_1_1trigger_1_1_trigger_result.html#a1f27dd6d5cca43956812ec78cfb7be2d", null ],
+    [ "value", "structgridfire_1_1trigger_1_1_trigger_result.html#a372af12d705b623075c41872f3ec96e1", null ]
+];
\ No newline at end of file
diff --git a/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html b/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html
index 4f0cd489..3af10f15 100644
--- a/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html
+++ b/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html
@@ -108,7 +108,7 @@ $(function(){initNavTree('structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reactio
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
 Public Member Functions</h2></td></tr>
-<tr class="memitem:a32b976b3e3e4e0403c1295f9b467e921" id="r_a32b976b3e3e4e0403c1295f9b467e921"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a32b976b3e3e4e0403c1295f9b467e921">operator()</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1">gridfire::reaction::ReactionSet</a> &amp;s) const noexcept</td></tr>
+<tr class="memitem:a32b976b3e3e4e0403c1295f9b467e921" id="r_a32b976b3e3e4e0403c1295f9b467e921"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a32b976b3e3e4e0403c1295f9b467e921">operator()</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a> &amp;s) const noexcept</td></tr>
 <tr class="separator:a32b976b3e3e4e0403c1295f9b467e921"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Member Function Documentation</h2>
@@ -122,9 +122,9 @@ Public Member Functions</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">size_t std::hash&lt; <a class="el" href="namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1">gridfire::reaction::ReactionSet</a> &gt;::operator() </td>
+          <td class="memname">size_t std::hash&lt; <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a> &gt;::operator() </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1">gridfire::reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>s</em></span></td><td>)</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">gridfire::reaction::ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>s</em></span></td><td>)</td>
           <td> const</td>
         </tr>
       </table>
diff --git a/docs/html/table__format_8h.html b/docs/html/table__format_8h.html
new file mode 100644
index 00000000..4ca3606e
--- /dev/null
+++ b/docs/html/table__format_8h.html
@@ -0,0 +1,148 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/utils/table_format.h File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('table__format_8h.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#namespaces">Namespaces</a> &#124;
+<a href="#func-members">Functions</a>  </div>
+  <div class="headertitle"><div class="title">table_format.h File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><code>#include &lt;iostream&gt;</code><br />
+<code>#include &lt;utility&gt;</code><br />
+<code>#include &lt;vector&gt;</code><br />
+<code>#include &lt;string&gt;</code><br />
+<code>#include &lt;sstream&gt;</code><br />
+<code>#include &lt;iomanip&gt;</code><br />
+<code>#include &lt;algorithm&gt;</code><br />
+<code>#include &lt;numeric&gt;</code><br />
+<code>#include &lt;memory&gt;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1utils_1_1_column_base.html">gridfire::utils::ColumnBase</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1utils_1_1_column.html">gridfire::utils::Column&lt; T &gt;</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1utils.html">gridfire::utils</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:a6451ba6762273b91a8281043cfaa5d2a" id="r_a6451ba6762273b91a8281043cfaa5d2a"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1utils.html#a6451ba6762273b91a8281043cfaa5d2a">gridfire::utils::format_table</a> (const std::string &amp;tableName, const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1utils_1_1_column_base.html">ColumnBase</a> &gt; &gt; &amp;columns)</td></tr>
+<tr class="separator:a6451ba6762273b91a8281043cfaa5d2a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_8e34b6fea5a3d13256b367f27bc2135d.html">utils</a></li><li class="navelem"><a class="el" href="table__format_8h.html">table_format.h</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/table__format_8h.js b/docs/html/table__format_8h.js
new file mode 100644
index 00000000..e44e7cfd
--- /dev/null
+++ b/docs/html/table__format_8h.js
@@ -0,0 +1,6 @@
+var table__format_8h =
+[
+    [ "gridfire::utils::ColumnBase", "classgridfire_1_1utils_1_1_column_base.html", "classgridfire_1_1utils_1_1_column_base" ],
+    [ "gridfire::utils::Column< T >", "classgridfire_1_1utils_1_1_column.html", "classgridfire_1_1utils_1_1_column" ],
+    [ "gridfire::utils::format_table", "namespacegridfire_1_1utils.html#a6451ba6762273b91a8281043cfaa5d2a", null ]
+];
\ No newline at end of file
diff --git a/docs/html/trigger__abstract_8h.html b/docs/html/trigger__abstract_8h.html
new file mode 100644
index 00000000..f3e6da5d
--- /dev/null
+++ b/docs/html/trigger__abstract_8h.html
@@ -0,0 +1,134 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/trigger/trigger_abstract.h File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('trigger__abstract_8h.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#namespaces">Namespaces</a>  </div>
+  <div class="headertitle"><div class="title">trigger_abstract.h File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><code>#include &quot;<a class="el" href="trigger__result_8h.html">gridfire/trigger/trigger_result.h</a>&quot;</code><br />
+<code>#include &lt;string&gt;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generic trigger interface for signaling events/conditions during integration.  <a href="classgridfire_1_1trigger_1_1_trigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_6ccae78e9032a1b4db4873aea5f3b43d.html">trigger</a></li><li class="navelem"><a class="el" href="trigger__abstract_8h.html">trigger_abstract.h</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/trigger__abstract_8h.js b/docs/html/trigger__abstract_8h.js
new file mode 100644
index 00000000..e3f16927
--- /dev/null
+++ b/docs/html/trigger__abstract_8h.js
@@ -0,0 +1,4 @@
+var trigger__abstract_8h =
+[
+    [ "gridfire::trigger::Trigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_trigger.html", "classgridfire_1_1trigger_1_1_trigger" ]
+];
\ No newline at end of file
diff --git a/docs/html/trigger__logical_8h.html b/docs/html/trigger__logical_8h.html
new file mode 100644
index 00000000..68faf60d
--- /dev/null
+++ b/docs/html/trigger__logical_8h.html
@@ -0,0 +1,155 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/trigger/trigger_logical.h File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('trigger__logical_8h.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#namespaces">Namespaces</a>  </div>
+  <div class="headertitle"><div class="title">trigger_logical.h File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Combinators for composing triggers with boolean logic (AND/OR/NOT/EveryNth).  
+<a href="#details">More...</a></p>
+<div class="textblock"><code>#include &quot;<a class="el" href="trigger__abstract_8h.html">gridfire/trigger/trigger_abstract.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="trigger__result_8h.html">gridfire/trigger/trigger_result.h</a>&quot;</code><br />
+<code>#include &lt;string&gt;</code><br />
+<code>#include &lt;vector&gt;</code><br />
+<code>#include &lt;memory&gt;</code><br />
+<code>#include &lt;stdexcept&gt;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_logical_trigger.html">gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt;</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logical conjunction of two triggers with short-circuit evaluation.  <a href="classgridfire_1_1trigger_1_1_and_trigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logical disjunction of two triggers with short-circuit evaluation.  <a href="classgridfire_1_1trigger_1_1_or_trigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logical negation of a trigger.  <a href="classgridfire_1_1trigger_1_1_not_trigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pass-through trigger that fires every Nth time its child trigger is true.  <a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Combinators for composing triggers with boolean logic (AND/OR/NOT/EveryNth). </p>
+<p>These templates wrap any Trigger&lt;Context&gt; and provide convenient composition. They also maintain simple hit/miss counters and implement short-circuit logic in check() and why(). </p>
+</div></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_6ccae78e9032a1b4db4873aea5f3b43d.html">trigger</a></li><li class="navelem"><a class="el" href="trigger__logical_8h.html">trigger_logical.h</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/trigger__logical_8h.js b/docs/html/trigger__logical_8h.js
new file mode 100644
index 00000000..4f241cd9
--- /dev/null
+++ b/docs/html/trigger__logical_8h.js
@@ -0,0 +1,8 @@
+var trigger__logical_8h =
+[
+    [ "gridfire::trigger::LogicalTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_logical_trigger.html", null ],
+    [ "gridfire::trigger::AndTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_and_trigger.html", "classgridfire_1_1trigger_1_1_and_trigger" ],
+    [ "gridfire::trigger::OrTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_or_trigger.html", "classgridfire_1_1trigger_1_1_or_trigger" ],
+    [ "gridfire::trigger::NotTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_not_trigger.html", "classgridfire_1_1trigger_1_1_not_trigger" ],
+    [ "gridfire::trigger::EveryNthTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_every_nth_trigger.html", "classgridfire_1_1trigger_1_1_every_nth_trigger" ]
+];
\ No newline at end of file
diff --git a/docs/html/trigger__pprint_8h.html b/docs/html/trigger__pprint_8h.html
new file mode 100644
index 00000000..dcfd2f5f
--- /dev/null
+++ b/docs/html/trigger__pprint_8h.html
@@ -0,0 +1,134 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/trigger/procedures/trigger_pprint.h File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('trigger__pprint_8h.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#namespaces">Namespaces</a> &#124;
+<a href="#func-members">Functions</a>  </div>
+  <div class="headertitle"><div class="title">trigger_pprint.h File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><code>#include &quot;<a class="el" href="trigger__result_8h.html">gridfire/trigger/trigger_result.h</a>&quot;</code><br />
+<code>#include &lt;iostream&gt;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:a5e0fe21f3356426f26b109cdeb1edcd9" id="r_a5e0fe21f3356426f26b109cdeb1edcd9"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger.html#a5e0fe21f3356426f26b109cdeb1edcd9">gridfire::trigger::printWhy</a> (const <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> &amp;result, const int indent=0)</td></tr>
+<tr class="memdesc:a5e0fe21f3356426f26b109cdeb1edcd9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pretty-print a <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> explanation tree to std::cout.  <br /></td></tr>
+<tr class="separator:a5e0fe21f3356426f26b109cdeb1edcd9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_6ccae78e9032a1b4db4873aea5f3b43d.html">trigger</a></li><li class="navelem"><a class="el" href="dir_d2ba15782ddae84c3d0c5f0e63bda236.html">procedures</a></li><li class="navelem"><a class="el" href="trigger__pprint_8h.html">trigger_pprint.h</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/trigger__pprint_8h.js b/docs/html/trigger__pprint_8h.js
new file mode 100644
index 00000000..8c0093d4
--- /dev/null
+++ b/docs/html/trigger__pprint_8h.js
@@ -0,0 +1,4 @@
+var trigger__pprint_8h =
+[
+    [ "gridfire::trigger::printWhy", "namespacegridfire_1_1trigger.html#a5e0fe21f3356426f26b109cdeb1edcd9", null ]
+];
\ No newline at end of file
diff --git a/docs/html/trigger__result_8h.html b/docs/html/trigger__result_8h.html
new file mode 100644
index 00000000..51ba7ee0
--- /dev/null
+++ b/docs/html/trigger__result_8h.html
@@ -0,0 +1,145 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/trigger/trigger_result.h File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('trigger__result_8h.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#namespaces">Namespaces</a>  </div>
+  <div class="headertitle"><div class="title">trigger_result.h File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Structured explanation node for trigger evaluations.  
+<a href="#details">More...</a></p>
+<div class="textblock"><code>#include &lt;vector&gt;</code><br />
+<code>#include &lt;string&gt;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">gridfire::trigger::TriggerResult</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Structured explanation node for trigger evaluations. </p>
+<p>TriggerResult represents a tree describing why a trigger evaluated to true/false. Each node contains a boolean value, a short name, a human-readable description, and optional nested causes for composite triggers (e.g., AND/OR/NOT).</p>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="comment">// Produce a result and pretty-print it</span></div>
+<div class="line"><a class="code hl_struct" href="structgridfire_1_1trigger_1_1_trigger_result.html">gridfire::trigger::TriggerResult</a> r{<span class="stringliteral">&quot;A&gt;5&quot;</span>, <span class="stringliteral">&quot;Threshold passed&quot;</span>, <span class="keyword">true</span>, {}};</div>
+<div class="line"><span class="comment">// See procedures/trigger_pprint.h for printWhy()</span></div>
+<div class="line"><span class="comment">// gridfire::trigger::printWhy(r);</span></div>
+<div class="ttc" id="astructgridfire_1_1trigger_1_1_trigger_result_html"><div class="ttname"><a href="structgridfire_1_1trigger_1_1_trigger_result.html">gridfire::trigger::TriggerResult</a></div><div class="ttdef"><b>Definition</b> trigger_result.h:23</div></div>
+</div><!-- fragment --> </dd></dl>
+</div></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_6ccae78e9032a1b4db4873aea5f3b43d.html">trigger</a></li><li class="navelem"><a class="el" href="trigger__result_8h.html">trigger_result.h</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/trigger__result_8h.js b/docs/html/trigger__result_8h.js
new file mode 100644
index 00000000..683ee7b3
--- /dev/null
+++ b/docs/html/trigger__result_8h.js
@@ -0,0 +1,4 @@
+var trigger__result_8h =
+[
+    [ "gridfire::trigger::TriggerResult", "structgridfire_1_1trigger_1_1_trigger_result.html", "structgridfire_1_1trigger_1_1_trigger_result" ]
+];
\ No newline at end of file
diff --git a/docs/html/types_2bindings_8cpp.html b/docs/html/types_2bindings_8cpp.html
index 1b9ca840..f7c28b59 100644
--- a/docs/html/types_2bindings_8cpp.html
+++ b/docs/html/types_2bindings_8cpp.html
@@ -112,12 +112,12 @@ $(function(){initNavTree('types_2bindings_8cpp.html',''); initResizable(true); }
 </div><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:a37d2e0b6a2605d063eec5e2a64e9bcc5" id="r_a37d2e0b6a2605d063eec5e2a64e9bcc5"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a37d2e0b6a2605d063eec5e2a64e9bcc5">register_type_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:a37d2e0b6a2605d063eec5e2a64e9bcc5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa0589677938fad59ffce3f6981f53ff0" id="r_aa0589677938fad59ffce3f6981f53ff0"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa0589677938fad59ffce3f6981f53ff0">register_type_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:aa0589677938fad59ffce3f6981f53ff0"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Function Documentation</h2>
-<a id="a37d2e0b6a2605d063eec5e2a64e9bcc5" name="a37d2e0b6a2605d063eec5e2a64e9bcc5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a37d2e0b6a2605d063eec5e2a64e9bcc5">&#9670;&#160;</a></span>register_type_bindings()</h2>
+<a id="aa0589677938fad59ffce3f6981f53ff0" name="aa0589677938fad59ffce3f6981f53ff0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa0589677938fad59ffce3f6981f53ff0">&#9670;&#160;</a></span>register_type_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -125,7 +125,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_type_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
diff --git a/docs/html/types_2bindings_8cpp.js b/docs/html/types_2bindings_8cpp.js
index 03880e6d..b26553d0 100644
--- a/docs/html/types_2bindings_8cpp.js
+++ b/docs/html/types_2bindings_8cpp.js
@@ -1,4 +1,4 @@
 var types_2bindings_8cpp =
 [
-    [ "register_type_bindings", "types_2bindings_8cpp.html#a37d2e0b6a2605d063eec5e2a64e9bcc5", null ]
+    [ "register_type_bindings", "types_2bindings_8cpp.html#aa0589677938fad59ffce3f6981f53ff0", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/types_2bindings_8h.html b/docs/html/types_2bindings_8h.html
index 66b81e5f..81aa4b2d 100644
--- a/docs/html/types_2bindings_8h.html
+++ b/docs/html/types_2bindings_8h.html
@@ -108,12 +108,12 @@ $(function(){initNavTree('types_2bindings_8h.html',''); initResizable(true); });
 </div><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:a37d2e0b6a2605d063eec5e2a64e9bcc5" id="r_a37d2e0b6a2605d063eec5e2a64e9bcc5"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a37d2e0b6a2605d063eec5e2a64e9bcc5">register_type_bindings</a> (pybind11::module &amp;m)</td></tr>
-<tr class="separator:a37d2e0b6a2605d063eec5e2a64e9bcc5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa0589677938fad59ffce3f6981f53ff0" id="r_aa0589677938fad59ffce3f6981f53ff0"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa0589677938fad59ffce3f6981f53ff0">register_type_bindings</a> (const pybind11::module &amp;m)</td></tr>
+<tr class="separator:aa0589677938fad59ffce3f6981f53ff0"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Function Documentation</h2>
-<a id="a37d2e0b6a2605d063eec5e2a64e9bcc5" name="a37d2e0b6a2605d063eec5e2a64e9bcc5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a37d2e0b6a2605d063eec5e2a64e9bcc5">&#9670;&#160;</a></span>register_type_bindings()</h2>
+<a id="aa0589677938fad59ffce3f6981f53ff0" name="aa0589677938fad59ffce3f6981f53ff0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa0589677938fad59ffce3f6981f53ff0">&#9670;&#160;</a></span>register_type_bindings()</h2>
 
 <div class="memitem">
 <div class="memproto">
@@ -121,7 +121,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_type_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
           <td></td>
         </tr>
       </table>
diff --git a/docs/html/types_2bindings_8h.js b/docs/html/types_2bindings_8h.js
index f73d1e1c..ba36c820 100644
--- a/docs/html/types_2bindings_8h.js
+++ b/docs/html/types_2bindings_8h.js
@@ -1,4 +1,4 @@
 var types_2bindings_8h =
 [
-    [ "register_type_bindings", "types_2bindings_8h.html#a37d2e0b6a2605d063eec5e2a64e9bcc5", null ]
+    [ "register_type_bindings", "types_2bindings_8h.html#aa0589677938fad59ffce3f6981f53ff0", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/utils_2bindings_8cpp.html b/docs/html/utils_2bindings_8cpp.html
index ce362c13..4a519013 100644
--- a/docs/html/utils_2bindings_8cpp.html
+++ b/docs/html/utils_2bindings_8cpp.html
@@ -105,7 +105,6 @@ $(function(){initNavTree('utils_2bindings_8cpp.html',''); initResizable(true); }
 </div><!--header-->
 <div class="contents">
 <div class="textblock"><code>#include &lt;pybind11/pybind11.h&gt;</code><br />
-<code>#include &lt;pybind11/stl.h&gt;</code><br />
 <code>#include &lt;pybind11/stl_bind.h&gt;</code><br />
 <code>#include &quot;<a class="el" href="utils_2bindings_8h.html">bindings.h</a>&quot;</code><br />
 <code>#include &quot;<a class="el" href="logging_8h.html">gridfire/utils/logging.h</a>&quot;</code><br />
diff --git a/docs/html/weak_8cpp.html b/docs/html/weak_8cpp.html
new file mode 100644
index 00000000..598d34ea
--- /dev/null
+++ b/docs/html/weak_8cpp.html
@@ -0,0 +1,138 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/lib/reaction/weak/weak.cpp File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('weak_8cpp.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#namespaces">Namespaces</a>  </div>
+  <div class="headertitle"><div class="title">weak.cpp File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><code>#include &quot;<a class="el" href="weak__rate__library_8h.html">gridfire/reaction/weak/weak_rate_library.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="weak_8h.html">gridfire/reaction/weak/weak.h</a>&quot;</code><br />
+<code>#include &quot;fourdst/composition/species.h&quot;</code><br />
+<code>#include &lt;array&gt;</code><br />
+<code>#include &lt;ranges&gt;</code><br />
+<code>#include &lt;unordered_map&gt;</code><br />
+<code>#include &lt;expected&gt;</code><br />
+<code>#include &lt;vector&gt;</code><br />
+<code>#include &lt;format&gt;</code><br />
+<code>#include &quot;<a class="el" href="weak__interpolator_8h.html">gridfire/reaction/weak/weak_interpolator.h</a>&quot;</code><br />
+<code>#include &quot;xxhash64.h&quot;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates.html">gridfire::rates</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_c85d3e3c5052e9ad9ce18c6863244a25.html">lib</a></li><li class="navelem"><a class="el" href="dir_902e06e9d82d80b06df7be6e417fa9ee.html">reaction</a></li><li class="navelem"><a class="el" href="dir_da65b9a371696ae0281f77edf1c03876.html">weak</a></li><li class="navelem"><a class="el" href="weak_8cpp.html">weak.cpp</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/weak_8h.html b/docs/html/weak_8h.html
new file mode 100644
index 00000000..e13408b2
--- /dev/null
+++ b/docs/html/weak_8h.html
@@ -0,0 +1,177 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/reaction/weak/weak.h File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('weak_8h.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#namespaces">Namespaces</a> &#124;
+<a href="#define-members">Macros</a>  </div>
+  <div class="headertitle"><div class="title">weak.h File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><code>#include &quot;<a class="el" href="reaction_8h.html">gridfire/reaction/reaction.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="weak__types_8h.html">gridfire/reaction/weak/weak_types.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="weak__interpolator_8h.html">gridfire/reaction/weak/weak_interpolator.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="engine__abstract_8h.html">gridfire/engine/engine_abstract.h</a>&quot;</code><br />
+<code>#include &quot;fourdst/composition/atomicSpecies.h&quot;</code><br />
+<code>#include &quot;fourdst/constants/const.h&quot;</code><br />
+<code>#include &quot;cppad/cppad.hpp&quot;</code><br />
+<code>#include &lt;memory&gt;</code><br />
+<code>#include &lt;unordered_map&gt;</code><br />
+<code>#include &lt;expected&gt;</code><br />
+<code>#include &lt;vector&gt;</code><br />
+<code>#include &lt;string&gt;</code><br />
+<code>#include &lt;string_view&gt;</code><br />
+<code>#include &lt;unordered_set&gt;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html">gridfire::rates::weak::WeakReactionMap</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Index of available weak reactions keyed by species.  <a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">gridfire::rates::weak::WeakReaction</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Concrete <a class="el" href="classgridfire_1_1_reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> representing a single weak process (beta±, e−/e+ capture).  <a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">CppAD atomic that wraps weak-rate interpolation for AD evaluation.  <a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">gridfire::rates::weak::WeakReaction::constants</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates.html">gridfire::rates</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="define-members" name="define-members"></a>
+Macros</h2></td></tr>
+<tr class="memitem:a56d76d6c9aef1e09f707c836a157ff27" id="r_a56d76d6c9aef1e09f707c836a157ff27"><td class="memItemLeft" align="right" valign="top">#define&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a56d76d6c9aef1e09f707c836a157ff27">GRIDFIRE_WEAK_REACTION_LIB_SENTINEL</a>&#160;&#160;&#160;-60.0</td></tr>
+<tr class="separator:a56d76d6c9aef1e09f707c836a157ff27"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Macro Definition Documentation</h2>
+<a id="a56d76d6c9aef1e09f707c836a157ff27" name="a56d76d6c9aef1e09f707c836a157ff27"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a56d76d6c9aef1e09f707c836a157ff27">&#9670;&#160;</a></span>GRIDFIRE_WEAK_REACTION_LIB_SENTINEL</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">#define GRIDFIRE_WEAK_REACTION_LIB_SENTINEL&#160;&#160;&#160;-60.0</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_f2d7b0c77cb2532170ac94ead6e4ba70.html">reaction</a></li><li class="navelem"><a class="el" href="dir_67aa14af464fbd247881f6980be7deb5.html">weak</a></li><li class="navelem"><a class="el" href="weak_8h.html">weak.h</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/weak_8h.js b/docs/html/weak_8h.js
new file mode 100644
index 00000000..9360efa9
--- /dev/null
+++ b/docs/html/weak_8h.js
@@ -0,0 +1,8 @@
+var weak_8h =
+[
+    [ "gridfire::rates::weak::WeakReactionMap", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map" ],
+    [ "gridfire::rates::weak::WeakReaction", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction" ],
+    [ "gridfire::rates::weak::WeakReaction::AtomicWeakRate", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate" ],
+    [ "gridfire::rates::weak::WeakReaction::constants", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants" ],
+    [ "GRIDFIRE_WEAK_REACTION_LIB_SENTINEL", "weak_8h.html#a56d76d6c9aef1e09f707c836a157ff27", null ]
+];
\ No newline at end of file
diff --git a/docs/html/weak__interpolator_8cpp.html b/docs/html/weak__interpolator_8cpp.html
new file mode 100644
index 00000000..f60bfdbb
--- /dev/null
+++ b/docs/html/weak__interpolator_8cpp.html
@@ -0,0 +1,139 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/lib/reaction/weak/weak_interpolator.cpp File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('weak__interpolator_8cpp.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#namespaces">Namespaces</a>  </div>
+  <div class="headertitle"><div class="title">weak_interpolator.cpp File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><code>#include &quot;<a class="el" href="weak__interpolator_8h.html">gridfire/reaction/weak/weak_interpolator.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="reaction_8h.html">gridfire/reaction/reaction.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="weak_8h.html">gridfire/reaction/weak/weak.h</a>&quot;</code><br />
+<code>#include &lt;algorithm&gt;</code><br />
+<code>#include &lt;map&gt;</code><br />
+<code>#include &lt;set&gt;</code><br />
+<code>#include &lt;unordered_map&gt;</code><br />
+<code>#include &lt;vector&gt;</code><br />
+<code>#include &lt;optional&gt;</code><br />
+<code>#include &lt;expected&gt;</code><br />
+<code>#include &lt;ranges&gt;</code><br />
+<code>#include &quot;fourdst/composition/species.h&quot;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates.html">gridfire::rates</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_c85d3e3c5052e9ad9ce18c6863244a25.html">lib</a></li><li class="navelem"><a class="el" href="dir_902e06e9d82d80b06df7be6e417fa9ee.html">reaction</a></li><li class="navelem"><a class="el" href="dir_da65b9a371696ae0281f77edf1c03876.html">weak</a></li><li class="navelem"><a class="el" href="weak__interpolator_8cpp.html">weak_interpolator.cpp</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/weak__interpolator_8h.html b/docs/html/weak__interpolator_8h.html
new file mode 100644
index 00000000..c9cf0244
--- /dev/null
+++ b/docs/html/weak__interpolator_8h.html
@@ -0,0 +1,141 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/reaction/weak/weak_interpolator.h File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('weak__interpolator_8h.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#namespaces">Namespaces</a>  </div>
+  <div class="headertitle"><div class="title">weak_interpolator.h File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><code>#include &quot;<a class="el" href="weak__types_8h.html">gridfire/reaction/weak/weak_types.h</a>&quot;</code><br />
+<code>#include &quot;fourdst/composition/atomicSpecies.h&quot;</code><br />
+<code>#include &lt;unordered_map&gt;</code><br />
+<code>#include &lt;cstdint&gt;</code><br />
+<code>#include &lt;vector&gt;</code><br />
+<code>#include &lt;expected&gt;</code><br />
+<code>#include &lt;array&gt;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">gridfire::rates::weak::WeakRateInterpolator</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">3D table interpolator for tabulated weak reaction data by isotope.  <a href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates.html">gridfire::rates</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_f2d7b0c77cb2532170ac94ead6e4ba70.html">reaction</a></li><li class="navelem"><a class="el" href="dir_67aa14af464fbd247881f6980be7deb5.html">weak</a></li><li class="navelem"><a class="el" href="weak__interpolator_8h.html">weak_interpolator.h</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/weak__interpolator_8h.js b/docs/html/weak__interpolator_8h.js
new file mode 100644
index 00000000..c7a0dfb5
--- /dev/null
+++ b/docs/html/weak__interpolator_8h.js
@@ -0,0 +1,4 @@
+var weak__interpolator_8h =
+[
+    [ "gridfire::rates::weak::WeakRateInterpolator", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator" ]
+];
\ No newline at end of file
diff --git a/docs/html/weak__rate__library_8h.html b/docs/html/weak__rate__library_8h.html
new file mode 100644
index 00000000..112b2762
--- /dev/null
+++ b/docs/html/weak__rate__library_8h.html
@@ -0,0 +1,135 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/reaction/weak/weak_rate_library.h File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('weak__rate__library_8h.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#namespaces">Namespaces</a> &#124;
+<a href="#var-members">Variables</a>  </div>
+  <div class="headertitle"><div class="title">weak_rate_library.h File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><code>#include &lt;array&gt;</code><br />
+<code>#include &quot;<a class="el" href="weak_8h.html">gridfire/reaction/weak/weak.h</a>&quot;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates.html">gridfire::rates</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="var-members" name="var-members"></a>
+Variables</h2></td></tr>
+<tr class="memitem:ac48364695089056d9a9b10689c4338e7" id="r_ac48364695089056d9a9b10689c4338e7"><td class="memItemLeft" align="right" valign="top">static constexpr std::array&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">RateDataRow</a>, 77400 &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ac48364695089056d9a9b10689c4338e7">gridfire::rates::weak::UNIFIED_WEAK_DATA</a></td></tr>
+<tr class="separator:ac48364695089056d9a9b10689c4338e7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_f2d7b0c77cb2532170ac94ead6e4ba70.html">reaction</a></li><li class="navelem"><a class="el" href="dir_67aa14af464fbd247881f6980be7deb5.html">weak</a></li><li class="navelem"><a class="el" href="weak__rate__library_8h.html">weak_rate_library.h</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/weak__rate__library_8h.js b/docs/html/weak__rate__library_8h.js
new file mode 100644
index 00000000..009c4371
--- /dev/null
+++ b/docs/html/weak__rate__library_8h.js
@@ -0,0 +1,4 @@
+var weak__rate__library_8h =
+[
+    [ "gridfire::rates::weak::UNIFIED_WEAK_DATA", "namespacegridfire_1_1rates_1_1weak.html#ac48364695089056d9a9b10689c4338e7", null ]
+];
\ No newline at end of file
diff --git a/docs/html/weak__types_8h.html b/docs/html/weak__types_8h.html
new file mode 100644
index 00000000..932a7f5e
--- /dev/null
+++ b/docs/html/weak__types_8h.html
@@ -0,0 +1,218 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: src/include/gridfire/reaction/weak/weak_types.h File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('weak__types_8h.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#namespaces">Namespaces</a> &#124;
+<a href="#enum-members">Enumerations</a> &#124;
+<a href="#func-members">Functions</a> &#124;
+<a href="#var-members">Variables</a>  </div>
+  <div class="headertitle"><div class="title">weak_types.h File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Plain data structures and enums for weak reaction tables, interpolation payloads, and errors.  
+<a href="#details">More...</a></p>
+<div class="textblock"><code>#include &lt;cstdint&gt;</code><br />
+<code>#include &lt;array&gt;</code><br />
+<code>#include &lt;vector&gt;</code><br />
+<code>#include &lt;optional&gt;</code><br />
+<code>#include &lt;unordered_map&gt;</code><br />
+<code>#include &lt;ostream&gt;</code><br />
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">gridfire::rates::weak::RateDataRow</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">One row of the unified weak-rate data table for a specific isotope and state.  <a href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">gridfire::rates::weak::WeakRatePayload</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interpolated weak-rate payload at a single state.  <a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html">gridfire::rates::weak::WeakRateDerivatives</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye), mu_e).  <a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html">gridfire::rates::weak::BoundsErrorInfo</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Detailed bounds information for a BOUNDS_ERROR.  <a href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html">gridfire::rates::weak::InterpolationError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interpolation error with optional per-axis bounds details.  <a href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html">gridfire::rates::weak::IsotopeGrid</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Regular 3D grid and payloads for a single isotope (A,Z).  <a href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">gridfire::rates::weak::WeakReactionEntry</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A single weak-reaction data point (type, state, and log values).  <a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates.html">gridfire::rates</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="enum-members" name="enum-members"></a>
+Enumerations</h2></td></tr>
+<tr class="memitem:ae834fb6f8cd1ac922967d5296a25bec7" id="r_ae834fb6f8cd1ac922967d5296a25bec7"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">gridfire::rates::weak::WeakReactionType</a> { <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a2f146a0cd66e2d010c8802852db26759">gridfire::rates::weak::BETA_PLUS_DECAY</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a12122315f1a94a10826f77a8fd949a94">gridfire::rates::weak::BETA_MINUS_DECAY</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7">gridfire::rates::weak::ELECTRON_CAPTURE</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7ae0be5539e1cf1c424806baa62540aa9d">gridfire::rates::weak::POSITRON_CAPTURE</a>
+ }</td></tr>
+<tr class="memdesc:ae834fb6f8cd1ac922967d5296a25bec7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Weak reaction channel identifiers.  <a href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">More...</a><br /></td></tr>
+<tr class="separator:ae834fb6f8cd1ac922967d5296a25bec7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aeddc9527afbf9755d4252f64ad5d70ca" id="r_aeddc9527afbf9755d4252f64ad5d70ca"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70ca">gridfire::rates::weak::NeutrinoTypes</a> { <br />
+&#160;&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa3fde0fbf2166dfb3dd60458c535699d8">gridfire::rates::weak::ELECTRON_NEUTRINO</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa8d99b7a21c927a7b8274caaf23290de6">gridfire::rates::weak::ELECTRON_ANTINEUTRINO</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caaabd6fefb3f84f632c3968acfcd76d554">gridfire::rates::weak::MUON_NEUTRINO</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caae6f2e17ddd61e72e331faf8700bbedef">gridfire::rates::weak::MUON_ANTINEUTRINO</a>
+, <br />
+&#160;&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa8c2cdafd7125a278e6e0da4c04e29d9e">gridfire::rates::weak::TAU_NEUTRINO</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa2712e9cfc69c4ee0c4ed136338acb6cc">gridfire::rates::weak::TAU_ANTINEUTRINO</a>
+<br />
+ }</td></tr>
+<tr class="memdesc:aeddc9527afbf9755d4252f64ad5d70ca"><td class="mdescLeft">&#160;</td><td class="mdescRight">Enumeration of neutrino flavors (for potential extensions and tagging).  <a href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70ca">More...</a><br /></td></tr>
+<tr class="separator:aeddc9527afbf9755d4252f64ad5d70ca"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a15ca7b1a1951c131fddb9eb011d59550" id="r_a15ca7b1a1951c131fddb9eb011d59550"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550">gridfire::rates::weak::WeakMapError</a> { <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550a3659baf2b06bba6c02bad8316d517761">gridfire::rates::weak::SPECIES_NOT_FOUND</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550a9a10f345b0f755d461a8673a5e9ef6b4">gridfire::rates::weak::UNKNOWN_ERROR</a>
+ }</td></tr>
+<tr class="memdesc:a15ca7b1a1951c131fddb9eb011d59550"><td class="mdescLeft">&#160;</td><td class="mdescRight">Lookup errors for WeakReactionMap queries.  <a href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550">More...</a><br /></td></tr>
+<tr class="separator:a15ca7b1a1951c131fddb9eb011d59550"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3fc4243d5c894779b986110c3a1ee1d4" id="r_a3fc4243d5c894779b986110c3a1ee1d4"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4">gridfire::rates::weak::InterpolationErrorType</a> { <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4a1516ba0949425312ba92ea385c80dc7a">gridfire::rates::weak::BOUNDS_ERROR</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4acc038b1c5dbfcede2eaa525fe0e2379d">gridfire::rates::weak::UNKNOWN_SPECIES_ERROR</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4a9a10f345b0f755d461a8673a5e9ef6b4">gridfire::rates::weak::UNKNOWN_ERROR</a>
+ }</td></tr>
+<tr class="memdesc:a3fc4243d5c894779b986110c3a1ee1d4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Error categories for interpolation attempts.  <a href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4">More...</a><br /></td></tr>
+<tr class="separator:a3fc4243d5c894779b986110c3a1ee1d4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5e6ecdf02b9748cf1b0a15a5cc1b34ae" id="r_a5e6ecdf02b9748cf1b0a15a5cc1b34ae"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">gridfire::rates::weak::TableAxes</a> { <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755">gridfire::rates::weak::T9</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea1448b5920e7c95f07cbc08d3ba5b9746">gridfire::rates::weak::LOG_RHOYE</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea5257ed2407fcbb45ab05897fdea80c2b">gridfire::rates::weak::MUE</a>
+ }</td></tr>
+<tr class="memdesc:a5e6ecdf02b9748cf1b0a15a5cc1b34ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Axes of the interpolation table.  <a href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">More...</a><br /></td></tr>
+<tr class="separator:a5e6ecdf02b9748cf1b0a15a5cc1b34ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:a81f6133710abef28d9d2b030fdbaaeef" id="r_a81f6133710abef28d9d2b030fdbaaeef"><td class="memItemLeft" align="right" valign="top">constexpr std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a81f6133710abef28d9d2b030fdbaaeef">gridfire::rates::weak::weak_reaction_type_name</a> (const <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a> t) noexcept</td></tr>
+<tr class="memdesc:a81f6133710abef28d9d2b030fdbaaeef"><td class="mdescLeft">&#160;</td><td class="mdescRight">Abbreviated channel name used in printing and IDs.  <br /></td></tr>
+<tr class="separator:a81f6133710abef28d9d2b030fdbaaeef"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="var-members" name="var-members"></a>
+Variables</h2></td></tr>
+<tr class="memitem:a7a262a98e1956c33645bad4eb4e40c7a" id="r_a7a262a98e1956c33645bad4eb4e40c7a"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4">InterpolationErrorType</a>, std::string_view &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a7a262a98e1956c33645bad4eb4e40c7a">gridfire::rates::weak::InterpolationErrorTypeMap</a></td></tr>
+<tr class="memdesc:a7a262a98e1956c33645bad4eb4e40c7a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable names for <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4" title="Error categories for interpolation attempts.">InterpolationErrorType</a>.  <br /></td></tr>
+<tr class="separator:a7a262a98e1956c33645bad4eb4e40c7a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Plain data structures and enums for weak reaction tables, interpolation payloads, and errors. </p>
+<p>This header defines the raw row format loaded from the unified weak-rate library, simple enumerations for channels and axes, compact payloads for interpolated values and derivatives, and error-reporting structures used by the interpolator. </p>
+</div></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_f2d7b0c77cb2532170ac94ead6e4ba70.html">reaction</a></li><li class="navelem"><a class="el" href="dir_67aa14af464fbd247881f6980be7deb5.html">weak</a></li><li class="navelem"><a class="el" href="weak__types_8h.html">weak_types.h</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/weak__types_8h.js b/docs/html/weak__types_8h.js
new file mode 100644
index 00000000..0d8c06cb
--- /dev/null
+++ b/docs/html/weak__types_8h.js
@@ -0,0 +1,40 @@
+var weak__types_8h =
+[
+    [ "gridfire::rates::weak::RateDataRow", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row" ],
+    [ "gridfire::rates::weak::WeakRatePayload", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload" ],
+    [ "gridfire::rates::weak::WeakRateDerivatives", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives" ],
+    [ "gridfire::rates::weak::BoundsErrorInfo", "structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html", "structgridfire_1_1rates_1_1weak_1_1_bounds_error_info" ],
+    [ "gridfire::rates::weak::InterpolationError", "structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html", "structgridfire_1_1rates_1_1weak_1_1_interpolation_error" ],
+    [ "gridfire::rates::weak::IsotopeGrid", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid" ],
+    [ "gridfire::rates::weak::WeakReactionEntry", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry" ],
+    [ "gridfire::rates::weak::InterpolationErrorType", "namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4", [
+      [ "gridfire::rates::weak::InterpolationErrorType::BOUNDS_ERROR", "namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4a1516ba0949425312ba92ea385c80dc7a", null ],
+      [ "gridfire::rates::weak::InterpolationErrorType::UNKNOWN_SPECIES_ERROR", "namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4acc038b1c5dbfcede2eaa525fe0e2379d", null ],
+      [ "gridfire::rates::weak::InterpolationErrorType::UNKNOWN_ERROR", "namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4a9a10f345b0f755d461a8673a5e9ef6b4", null ]
+    ] ],
+    [ "gridfire::rates::weak::NeutrinoTypes", "namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70ca", [
+      [ "gridfire::rates::weak::NeutrinoTypes::ELECTRON_NEUTRINO", "namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa3fde0fbf2166dfb3dd60458c535699d8", null ],
+      [ "gridfire::rates::weak::NeutrinoTypes::ELECTRON_ANTINEUTRINO", "namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa8d99b7a21c927a7b8274caaf23290de6", null ],
+      [ "gridfire::rates::weak::NeutrinoTypes::MUON_NEUTRINO", "namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caaabd6fefb3f84f632c3968acfcd76d554", null ],
+      [ "gridfire::rates::weak::NeutrinoTypes::MUON_ANTINEUTRINO", "namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caae6f2e17ddd61e72e331faf8700bbedef", null ],
+      [ "gridfire::rates::weak::NeutrinoTypes::TAU_NEUTRINO", "namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa8c2cdafd7125a278e6e0da4c04e29d9e", null ],
+      [ "gridfire::rates::weak::NeutrinoTypes::TAU_ANTINEUTRINO", "namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa2712e9cfc69c4ee0c4ed136338acb6cc", null ]
+    ] ],
+    [ "gridfire::rates::weak::TableAxes", "namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae", [
+      [ "gridfire::rates::weak::TableAxes::T9", "namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755", null ],
+      [ "gridfire::rates::weak::TableAxes::LOG_RHOYE", "namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea1448b5920e7c95f07cbc08d3ba5b9746", null ],
+      [ "gridfire::rates::weak::TableAxes::MUE", "namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea5257ed2407fcbb45ab05897fdea80c2b", null ]
+    ] ],
+    [ "gridfire::rates::weak::WeakMapError", "namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550", [
+      [ "gridfire::rates::weak::WeakMapError::SPECIES_NOT_FOUND", "namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550a3659baf2b06bba6c02bad8316d517761", null ],
+      [ "gridfire::rates::weak::WeakMapError::UNKNOWN_ERROR", "namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550a9a10f345b0f755d461a8673a5e9ef6b4", null ]
+    ] ],
+    [ "gridfire::rates::weak::WeakReactionType", "namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7", [
+      [ "gridfire::rates::weak::WeakReactionType::BETA_PLUS_DECAY", "namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a2f146a0cd66e2d010c8802852db26759", null ],
+      [ "gridfire::rates::weak::WeakReactionType::BETA_MINUS_DECAY", "namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a12122315f1a94a10826f77a8fd949a94", null ],
+      [ "gridfire::rates::weak::WeakReactionType::ELECTRON_CAPTURE", "namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7", null ],
+      [ "gridfire::rates::weak::WeakReactionType::POSITRON_CAPTURE", "namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7ae0be5539e1cf1c424806baa62540aa9d", null ]
+    ] ],
+    [ "gridfire::rates::weak::weak_reaction_type_name", "namespacegridfire_1_1rates_1_1weak.html#a81f6133710abef28d9d2b030fdbaaeef", null ],
+    [ "gridfire::rates::weak::InterpolationErrorTypeMap", "namespacegridfire_1_1rates_1_1weak.html#a7a262a98e1956c33645bad4eb4e40c7a", null ]
+];
\ No newline at end of file