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docs(docs): rebuilt docs with loads more detail for triggers and weak reactions

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This commit is contained in:
Emily Boudreaux
2025-10-08 11:17:09 -04:00
parent 8a0b5b2c36
commit 274c566726
600 changed files with 39207 additions and 9125 deletions
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@@ -102,28 +102,32 @@ $(function(){initNavTree('functions_s.html',''); initResizable(true); });
<div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
<h3><a id="index_s" name="index_s"></a>- s -</h3><ul>
<li>seed_indices&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
<li>seed_species&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af2d7e09d940e0fb3ca24a4bc8ec01031">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
<li>selectPartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b">gridfire::partition::CompositePartitionFunction</a></li>
<li>set_callback()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a6bb0738eef5669b3ad83a3c65a0d1e96">gridfire::solver::DirectNetworkSolver</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a4d97ee85933d5e5f90d4194bb021a1dc">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>, <a class="el" href="class_py_dynamic_network_solver_strategy.html#a112a7babc03858a69d6994a7155370d3">PyDynamicNetworkSolverStrategy</a></li>
<li>set_callback()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a77638ef3d2279009e5a57bbd3f0eb63b">gridfire::solver::CVODESolverStrategy</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a4d97ee85933d5e5f90d4194bb021a1dc">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>, <a class="el" href="class_py_dynamic_network_solver_strategy.html#a112a7babc03858a69d6994a7155370d3">PyDynamicNetworkSolverStrategy</a></li>
<li>set_stdout_logging_enabled()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a46dacb6eb075f2aadac0e56972deeaa3">gridfire::solver::CVODESolverStrategy</a></li>
<li>setFormat()&#160;:&#160;<a class="el" href="classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4">gridfire::Network</a></li>
<li>setNetworkReactions()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#acb5fa7f03cd89b8c1b6b9ffdf3abb12e">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6">PyDynamicEngine</a></li>
<li>setNetworkReactions()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#adedc8547568d643473bdfcc86040b488">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a49025489901e22a20cdf99b455ff2ff0">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a52288e2629609c8438a3c9bc3f910016">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#af99f5e4871808188d00379c1c35868fe">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#af469cba3be850d53f659ec173f0eb4e4">PyDynamicEngine</a></li>
<li>setPrecomputation()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1">gridfire::GraphEngine</a></li>
<li>setScreeningModel()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac">PyDynamicEngine</a></li>
<li>setStiff()&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#aefed972081514c29cdaaa1efd857ad8d">gridfire::approx8::Approx8Network</a>, <a class="el" href="classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe">gridfire::Network</a></li>
<li>setUseReverseReactions()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197">gridfire::GraphEngine</a></li>
<li>SimpleReactionListFileParser()&#160;:&#160;<a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993">gridfire::io::SimpleReactionListFileParser</a></li>
<li>size()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#afa41050855b842c63db16c94d2e9b897">gridfire::reaction::LogicalReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
<li>solveQSEAbundances()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c5fcb8e3396d74359fd601554c9ffa9">gridfire::MultiscalePartitioningEngineView</a></li>
<li>sourceLabel()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0">gridfire::Reaction</a></li>
<li>sources()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#add094eda0e71126f8443698d7f3317f4">gridfire::reaction::LogicalReaction</a></li>
<li>species_indices&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
<li>SimulationTimeTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a235f84a37370a1ca2226fb881b4051c7">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></li>
<li>size()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a4c58951d9f7ab252717c226b0da80a9d">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf">gridfire::ReactionSet</a></li>
<li>solveQSEAbundances()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a40ce2c18063cd56cffd58419b9ae96bf">gridfire::MultiscalePartitioningEngineView</a></li>
<li>solver_instance&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ad7f3eb9caae25ef25357c41c23d6b392">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></li>
<li>sourceLabel()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a96d4ab87de02e9b0be3c248e2e955b4b">gridfire::reaction::ReaclibReaction</a></li>
<li>sources()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad4979f437dc787a5475c3a029804ed99">gridfire::reaction::LogicalReaclibReaction</a></li>
<li>speedOfLight&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a016c3e02f622e21073f9110707177b76">gridfire::rates::weak::WeakReaction::constants</a></li>
<li>StaleEngineError()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50">gridfire::exceptions::StaleEngineError</a>, <a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10">gridfire::expectations::StaleEngineError</a></li>
<li>StaleEngineTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d">gridfire::exceptions::StaleEngineTrigger</a></li>
<li>staleType&#160;:&#160;<a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590">gridfire::expectations::StaleEngineError</a></li>
<li>state&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adab4b53a94b935f89f799bd5a67847a2">gridfire::solver::DirectNetworkSolver::TimestepContext</a></li>
<li>state&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#aaae3c42b9172be4d501f022e67f5a6f6">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
<li>status&#160;:&#160;<a class="el" href="structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d">gridfire::PrimingReport</a></li>
<li>StepDerivatives()&#160;:&#160;<a class="el" href="structgridfire_1_1_step_derivatives.html#a26deeb236e77eddb0119ad368a5d8f1c">gridfire::StepDerivatives&lt; T &gt;</a></li>
<li>stoichiometric_coefficients&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c">gridfire::GraphEngine::PrecomputedReaction</a></li>
<li>stoichiometry()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac">gridfire::Reaction</a></li>
<li>stoichiometry()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a8bf7dc26d9f1375625df99bceba08a44">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a57b2695d152360a6ba08776cc760e3a1">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ad49f4cad024db72c966d949c75f1ce4d">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a55b7f61d9bde45f2ca485c1b07a05950">gridfire::Reaction</a></li>
<li>success&#160;:&#160;<a class="el" href="structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3">gridfire::PrimingReport</a></li>
<li>supports()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="class_py_partition_function.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8">PyPartitionFunction</a></li>
<li>symmetry_factor&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e">gridfire::GraphEngine::PrecomputedReaction</a></li>