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docs(docs): rebuilt docs with loads more detail for triggers and weak reactions

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Emily Boudreaux
2025-10-08 11:17:09 -04:00
parent 8a0b5b2c36
commit 274c566726
600 changed files with 39207 additions and 9125 deletions
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23
docs/html/classgridfire_1_1_defined_engine_view.js
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@@ -1,22 +1,23 @@
var classgridfire_1_1_defined_engine_view =
[
[ "DefinedEngineView", "classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92", null ],
[ "calculateMolarReactionFlow", "classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032", null ],
[ "calculateRHSAndEnergy", "classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d", null ],
[ "calculateEpsDerivatives", "classgridfire_1_1_defined_engine_view.html#a06aca977aafb4784fd167acb8c02dda2", null ],
[ "calculateMolarReactionFlow", "classgridfire_1_1_defined_engine_view.html#a74298377d0432ae3d577be0e9e6052b3", null ],
[ "calculateRHSAndEnergy", "classgridfire_1_1_defined_engine_view.html#af273b29d7700cdc34da6e2712fffc5c2", null ],
[ "collect", "classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e", null ],
[ "constructReactionIndexMap", "classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68", null ],
[ "constructSpeciesIndexMap", "classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985", null ],
[ "generateJacobianMatrix", "classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae", null ],
[ "generateJacobianMatrix", "classgridfire_1_1_defined_engine_view.html#ab80eadd713a40e9263e5231737e956d0", null ],
[ "generateStoichiometryMatrix", "classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6", null ],
[ "getBaseEngine", "classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484", null ],
[ "getJacobianMatrixEntry", "classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b", null ],
[ "getNetworkReactions", "classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d", null ],
[ "getJacobianMatrixEntry", "classgridfire_1_1_defined_engine_view.html#aa49532266ff959ac66f501336f102ce8", null ],
[ "getNetworkReactions", "classgridfire_1_1_defined_engine_view.html#a5f9db5a9287aa03b2fa4d516e9a576b6", null ],
[ "getNetworkSpecies", "classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211", null ],
[ "getScreeningModel", "classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c", null ],
[ "getSpeciesDestructionTimescales", "classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491", null ],
[ "getSpeciesIndex", "classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3", null ],
[ "getSpeciesTimescales", "classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72", null ],
[ "getStoichiometryMatrixEntry", "classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2", null ],
[ "getSpeciesDestructionTimescales", "classgridfire_1_1_defined_engine_view.html#a7bcf169ba1e12e3356d4bcc27c3fc554", null ],
[ "getSpeciesIndex", "classgridfire_1_1_defined_engine_view.html#af3b355ffcda6a8f2841184cc56e3761a", null ],
[ "getSpeciesTimescales", "classgridfire_1_1_defined_engine_view.html#a18f46d92ea7e04068ad9e7af4ed605a8", null ],
[ "getStoichiometryMatrixEntry", "classgridfire_1_1_defined_engine_view.html#af1843cfd2a95bfa46ab40d4c4de11ef9", null ],
[ "isStale", "classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87", null ],
[ "mapFullToView", "classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873", null ],
[ "mapNetInToMolarAbundanceVector", "classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2", null ],
@@ -24,11 +25,11 @@ var classgridfire_1_1_defined_engine_view =
[ "mapViewToFullReactionIndex", "classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1", null ],
[ "mapViewToFullSpeciesIndex", "classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a", null ],
[ "primeEngine", "classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460", null ],
[ "setNetworkReactions", "classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d", null ],
[ "setNetworkReactions", "classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9", null ],
[ "setScreeningModel", "classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258", null ],
[ "update", "classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae", null ],
[ "validateNetworkState", "classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0", null ],
[ "m_activeReactions", "classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965", null ],
[ "m_activeReactions", "classgridfire_1_1_defined_engine_view.html#a824fe65ae22fa856051f2652764a0bb6", null ],
[ "m_activeSpecies", "classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae", null ],
[ "m_baseEngine", "classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195", null ],
[ "m_isStale", "classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382", null ],