Merge pull request #4 from tboudreaux/feat/non_conforming

Non Conforming Vacuum Domain

CHANGELOG.md

@@ -0,0 +1,31 @@
+## v0.2.1 (2026-03-20)
+
+### Feat
+
+- **tools**: Added winding visualization
+- **src**: Enabled Vacuume Region Generation
+
+### Fix
+
+- **cuviliniear.cpp**: removed unused BSD proc header
+- **stroid**: exit properly after stroid -v
+
+## v0.1.0 (2026-01-31)
+
+### Feat
+
+- **release**: added macos release script
+- **build-check**: added setup checks for stl compatibility
+- **stroid**: improved CLI & fixed gcc bug
+- **stroid**: added command line and tests
+- **stroid**: first working version
+- **stroid**: initial commit
+
+### Fix
+
+- **linux**: fixed linux compilation
+- **build-check**: removed c lang
+
+### Refactor
+
+- **stroid**: changed default mesh format from VTU to MFEM

Doxyfile

@@ -48,7 +48,7 @@ PROJECT_NAME           = stroid
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER         = v0.2.0
+PROJECT_NUMBER         = v0.6.0
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewers a

build-config/meson.build

@@ -2,3 +2,19 @@ subdir('mfem')
 subdir('libconfig')
 subdir('CLI11')
 subdir('magic_enum')
+
+if get_option('build_python')
+    subdir('python')
+    subdir('pybind')
+endif
+
+if get_option('build_python')
+    stroid_pkg_dir    = py_installation.get_install_dir() / 'stroid'
+    stroid_includedir = stroid_pkg_dir / 'include'
+    stroid_libdir     = stroid_pkg_dir / 'lib'
+    stroid_pcdir      = stroid_libdir / 'pkgconfig'
+else
+    stroid_includedir = get_option('includedir')
+    stroid_libdir     = get_option('libdir')
+    stroid_pcdir      = get_option('libdir') / 'pkgconfig'
+endif

build-config/mfem/meson.build

@@ -1,3 +1,6 @@
+mfem_dep = dependency('mfem', required : false)
+
+if not mfem_dep.found()
     cmake = import('cmake')
     mfem_cmake_options = cmake.subproject_options()
     mfem_cmake_options.add_cmake_defines({
@@ -14,3 +17,6 @@ mfem_sp = cmake.subproject(
         'mfem',
         options: mfem_cmake_options)
     mfem_dep = mfem_sp.dependency('mfem')
+else
+    message('Using system-installed MFEM library')
+endif

build-config/pybind/meson.build

@@ -0,0 +1,3 @@
+pybind11_proj = subproject('pybind11')
+pybind11_dep = pybind11_proj.get_variable('pybind11_dep')
+python3_dep = dependency('python3')

build-config/python/meson.build

@@ -0,0 +1,5 @@
+py_installation = import('python').find_installation('python3', pure: false)
+
+py_dep = py_installation.dependency()
+py_module_prefix = ''
+py_module_suffix = 'so'

build-python/meson.build

@@ -0,0 +1,43 @@
+if get_option('build_python')
+    message('Building Python bindings...')
+
+    stroid_py_deps = [
+        py_dep,
+        pybind11_dep,
+        stroid_dep
+    ]
+
+    if host_machine.system() == 'darwin'
+        stroid_ext_rpath = '@loader_path/lib'
+    else
+        stroid_ext_rpath = '$ORIGIN/lib'
+    endif
+
+    py_sources =  [
+        meson.project_source_root() + '/src/python/bindings.cpp',
+        meson.project_source_root() + '/src/python/config/bindings.cpp',
+        meson.project_source_root() + '/src/python/exceptions/bindings.cpp',
+        meson.project_source_root() + '/src/python/IO/bindings.cpp',
+        meson.project_source_root() + '/src/python/refinement/bindings.cpp',
+        meson.project_source_root() + '/src/python/utils/bindings.cpp',
+    ]
+
+    py_mod = py_installation.extension_module(
+        '_stroid',
+        sources: py_sources,
+        dependencies: stroid_py_deps,
+        install: true,
+        link_args: stroid_ext_rpath_args,
+        build_rpath: stroid_ext_rpath,
+        install_rpath: stroid_ext_rpath,
+        subdir: 'stroid',
+    )
+
+    py_installation.install_sources(
+        meson.project_source_root() + '/src/python/stroid/__init__.py',
+        subdir: 'stroid',
+    )
+
+else
+    message('Python bindings disabled')
+endif

configs/conditioned_core.toml

@@ -0,0 +1,21 @@
+[main]
+core_mapping = "multi_block"
+refinement_levels = 2
+order = 3
+include_external_domain = true
+r_core = 0.25
+r_star = 1.0
+r_infinity = 6.0
+flattening = 0.0
+r_instability = 1e-14
+core_steepness = 1.0
+continuity_order = 2
+surface_bdr_id = 1
+inf_bdr_id = 2
+core_id = 1
+envelope_id = 2
+vacuum_id = 3
+
+[main.optimization_methods]
+tmop = false
+smoothstep = true

configs/default_config.toml

@@ -13,3 +13,6 @@ surface_bdr_id = 1
 core_id = 1
 envelope_id = 2
 vacuum_id = 3
+
+[main.optimization_methods]
+smoothstep = true

configs/nonconforming_vacuum.toml

@@ -0,0 +1,17 @@
+[main]
+# Absolute minimum depths from the initial block topology.
+refinement_levels = 4
+vacuum_refinement_levels = 2
+# Omit to inherit refinement_levels at the vacuum outer boundary.
+# vacuum_outer_refinement_levels = 4
+order = 3
+include_external_domain = true
+core_mapping = "multi_block"
+r_core = 0.25
+r_star = 1.0
+r_infinity = 6.0
+flattening = 0.0
+
+[main.optimization_methods]
+tmop = false
+smoothstep = true

configs/test_external_domain.toml

@@ -13,3 +13,5 @@ surface_bdr_id = 1
 core_id = 1
 envelope_id = 2
 vacuum_id = 3
+[main.optimization_methods]
+smoothstep = true

configs/test_external_domain_refinement_l1.toml

@@ -14,3 +14,5 @@ core_id = 1
 envelope_id = 2
 vacuum_id = 3
 
+[main.optimization_methods]
+smoothstep = true

configs/test_flattening.toml

@@ -13,3 +13,5 @@ surface_bdr_id = 1
 core_id = 1
 envelope_id = 2
 vacuum_id = 3
+[main.optimization_methods]
+smoothstep = true

configs/test_polynomial_projection.toml

@@ -0,0 +1,17 @@
+[main]
+core_steepness = 1.0
+flattening = 0.2
+include_external_domain = false
+inf_bdr_id = 2
+order = 3
+r_core = 1.5
+r_infinity = 6.0
+r_instability = 1e-14
+r_star = 5.0
+refinement_levels = 1
+surface_bdr_id = 1
+core_id = 1
+envelope_id = 2
+vacuum_id = 3
+[main.optimization_methods]
+smoothstep = true

configs/test_refinement_l2.toml

@@ -14,3 +14,5 @@ core_id = 1
 envelope_id = 2
 vacuum_id = 3
 
+[main.optimization_methods]
+smoothstep = true

configs/test_volume_no_external.toml

@@ -14,3 +14,5 @@ core_id = 1
 envelope_id = 2
 vacuum_id = 3
 
+[main.optimization_methods]
+smoothstep = true

configs/test_volume_spherical_no_external.toml

@@ -14,3 +14,5 @@ core_id = 1
 envelope_id = 2
 vacuum_id = 3
 
+[main.optimization_methods]
+smoothstep = true

configs/test_volume_spherical_with_external.toml

@@ -14,3 +14,5 @@ core_id = 1
 envelope_id = 2
 vacuum_id = 3
 
+[main.optimization_methods]
+smoothstep = true

configs/test_volume_with_external.toml

@@ -14,3 +14,5 @@ core_id = 1
 envelope_id = 2
 vacuum_id = 3
 
+[main.optimization_methods]
+smoothstep = true

docs/html/_logo_8png.html

@@ -31,7 +31,7 @@
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   <td id="projectalign">
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+   <div id="projectname">stroid<span id="projectnumber">&#160;v0.6.0</span>
    </div>
    <div id="projectbrief">Multi-block curvilinear mesh generation</div>
   </td>

docs/html/annotated.html

@@ -31,7 +31,7 @@
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   <td id="projectlogo"><img alt="Logo" src="Logo.png"/></td>
   <td id="projectalign">
-   <div id="projectname">stroid<span id="projectnumber">&#160;v0.2.0</span>
+   <div id="projectname">stroid<span id="projectnumber">&#160;v0.6.0</span>
    </div>
    <div id="projectbrief">Multi-block curvilinear mesh generation</div>
   </td>
@@ -106,9 +106,39 @@ $(function(){initNavTree('annotated.html',''); initResizable(true); });
 <div class="contents">
 <div class="textblock">Here are the classes, structs, unions and interfaces with brief descriptions:</div><div class="directory">
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-<tr id="row_0_0_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_0_" class="arrow" onclick="dynsection.toggleFolder('0_0_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacestroid_1_1config.html" target="_self">config</a></td><td class="desc"></td></tr>
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+<tr id="row_1_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_1_" class="arrow" onclick="dynsection.toggleFolder('1_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacestroid.html" target="_self">stroid</a></td><td class="desc">Public API surface for the stroid mesh generation library </td></tr>
+<tr id="row_1_0_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_1_0_" class="arrow" onclick="dynsection.toggleFolder('1_0_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacestroid_1_1config.html" target="_self">config</a></td><td class="desc">Configuration types and defaults for mesh generation </td></tr>
+<tr id="row_1_0_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstroid_1_1config_1_1_mesh_config.html" target="_self">MeshConfig</a></td><td class="desc">Configuration parameters for stroid mesh generation </td></tr>
+<tr id="row_1_0_1_" class="odd"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstroid_1_1config_1_1_optimization_methods.html" target="_self">OptimizationMethods</a></td><td class="desc"></td></tr>
+<tr id="row_1_1_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_1_1_" class="arrow" onclick="dynsection.toggleFolder('1_1_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacestroid_1_1exceptions.html" target="_self">exceptions</a></td><td class="desc"></td></tr>
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docs/html/annotated_dup.js

@@ -1,8 +1,42 @@
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+        [ "BoundingBox", "structstroid_1_1stats_1_1_bounding_box.html", "structstroid_1_1stats_1_1_bounding_box" ],
+        [ "BoundingBoxStats", "structstroid_1_1stats_1_1_bounding_box_stats.html", "structstroid_1_1stats_1_1_bounding_box_stats" ],
+        [ "BowingStats", "structstroid_1_1stats_1_1_bowing_stats.html", "structstroid_1_1stats_1_1_bowing_stats" ],
+        [ "CentroidStats", "structstroid_1_1stats_1_1_centroid_stats.html", "structstroid_1_1stats_1_1_centroid_stats" ],
+        [ "ConfigMeta", "structstroid_1_1stats_1_1_config_meta.html", "structstroid_1_1stats_1_1_config_meta" ],
+        [ "ConformityStats", "structstroid_1_1stats_1_1_conformity_stats.html", "structstroid_1_1stats_1_1_conformity_stats" ],
+        [ "ElementCounts", "structstroid_1_1stats_1_1_element_counts.html", "structstroid_1_1stats_1_1_element_counts" ],
+        [ "EllipticityStats", "structstroid_1_1stats_1_1_ellipticity_stats.html", "structstroid_1_1stats_1_1_ellipticity_stats" ],
+        [ "JacobianStats", "structstroid_1_1stats_1_1_jacobian_stats.html", "structstroid_1_1stats_1_1_jacobian_stats" ],
+        [ "MeshSizeStats", "structstroid_1_1stats_1_1_mesh_size_stats.html", "structstroid_1_1stats_1_1_mesh_size_stats" ],
+        [ "MeshStats", "structstroid_1_1stats_1_1_mesh_stats.html", "structstroid_1_1stats_1_1_mesh_stats" ],
+        [ "OuterBoundsStats", "structstroid_1_1stats_1_1_outer_bounds_stats.html", "structstroid_1_1stats_1_1_outer_bounds_stats" ],
+        [ "RadiusStats", "structstroid_1_1stats_1_1_radius_stats.html", "structstroid_1_1stats_1_1_radius_stats" ],
+        [ "RefinementStats", "structstroid_1_1stats_1_1_refinement_stats.html", "structstroid_1_1stats_1_1_refinement_stats" ],
+        [ "RegionRefinementStats", "structstroid_1_1stats_1_1_region_refinement_stats.html", "structstroid_1_1stats_1_1_region_refinement_stats" ],
+        [ "VolumeAreaStats", "structstroid_1_1stats_1_1_volume_area_stats.html", "structstroid_1_1stats_1_1_volume_area_stats" ]
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+      [ "ScalarMeshField", "structstroid_1_1_scalar_mesh_field.html", "structstroid_1_1_scalar_mesh_field" ],
+      [ "StroidMesh", "structstroid_1_1_stroid_mesh.html", "structstroid_1_1_stroid_mesh" ]
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@@ -31,7 +31,7 @@
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