feat(topology): Added TMOP support

Meshes generated purley algebraically tend to be poorly conditioned. Incorporated MFEM's TMOP support based on a metric of ideal shape and unit size

configs/default_config.toml

@@ -13,3 +13,6 @@ surface_bdr_id = 1
 core_id = 1
 envelope_id = 2
 vacuum_id = 3
+
+[main.optimization_methods]
+smoothstep = true

configs/test_external_domain.toml

@@ -13,3 +13,5 @@ surface_bdr_id = 1
 core_id = 1
 envelope_id = 2
 vacuum_id = 3
+[main.optimization_methods]
+smoothstep = true

configs/test_external_domain_refinement_l1.toml

@@ -14,3 +14,5 @@ core_id = 1
 envelope_id = 2
 vacuum_id = 3
 
+[main.optimization_methods]
+smoothstep = true

configs/test_flattening.toml

@@ -13,3 +13,5 @@ surface_bdr_id = 1
 core_id = 1
 envelope_id = 2
 vacuum_id = 3
+[main.optimization_methods]
+smoothstep = true

configs/test_polynomial_projection.toml

@@ -0,0 +1,17 @@
+[main]
+core_steepness = 1.0
+flattening = 0.2
+include_external_domain = false
+inf_bdr_id = 2
+order = 3
+r_core = 1.5
+r_infinity = 6.0
+r_instability = 1e-14
+r_star = 5.0
+refinement_levels = 1
+surface_bdr_id = 1
+core_id = 1
+envelope_id = 2
+vacuum_id = 3
+[main.optimization_methods]
+smoothstep = true

configs/test_refinement_l2.toml

@@ -14,3 +14,5 @@ core_id = 1
 envelope_id = 2
 vacuum_id = 3
 
+[main.optimization_methods]
+smoothstep = true

configs/test_volume_no_external.toml

@@ -14,3 +14,5 @@ core_id = 1
 envelope_id = 2
 vacuum_id = 3
 
+[main.optimization_methods]
+smoothstep = true

configs/test_volume_spherical_no_external.toml

@@ -14,3 +14,5 @@ core_id = 1
 envelope_id = 2
 vacuum_id = 3
 
+[main.optimization_methods]
+smoothstep = true

configs/test_volume_spherical_with_external.toml

@@ -14,3 +14,5 @@ core_id = 1
 envelope_id = 2
 vacuum_id = 3
 
+[main.optimization_methods]
+smoothstep = true

configs/test_volume_with_external.toml

@@ -14,3 +14,5 @@ core_id = 1
 envelope_id = 2
 vacuum_id = 3
 
+[main.optimization_methods]
+smoothstep = true