feat(python): added python bindings
This commit is contained in:
@@ -1,4 +1,20 @@
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subdir('mfem')
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subdir('libconfig')
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subdir('CLI11')
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subdir('magic_enum')
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subdir('magic_enum')
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if get_option('build_python')
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subdir('python')
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subdir('pybind')
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endif
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if get_option('build_python')
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stroid_pkg_dir = py_installation.get_install_dir() / 'stroid'
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stroid_includedir = stroid_pkg_dir / 'include'
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stroid_libdir = stroid_pkg_dir / 'lib'
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stroid_pcdir = stroid_libdir / 'pkgconfig'
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else
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stroid_includedir = get_option('includedir')
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stroid_libdir = get_option('libdir')
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stroid_pcdir = get_option('libdir') / 'pkgconfig'
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endif
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3
build-config/pybind/meson.build
Normal file
3
build-config/pybind/meson.build
Normal file
@@ -0,0 +1,3 @@
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pybind11_proj = subproject('pybind11')
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pybind11_dep = pybind11_proj.get_variable('pybind11_dep')
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python3_dep = dependency('python3')
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5
build-config/python/meson.build
Normal file
5
build-config/python/meson.build
Normal file
@@ -0,0 +1,5 @@
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py_installation = import('python').find_installation('python3', pure: false)
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py_dep = py_installation.dependency()
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py_module_prefix = ''
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py_module_suffix = 'so'
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43
build-python/meson.build
Normal file
43
build-python/meson.build
Normal file
@@ -0,0 +1,43 @@
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if get_option('build_python')
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message('Building Python bindings...')
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stroid_py_deps = [
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py_dep,
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pybind11_dep,
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stroid_dep
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]
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if host_machine.system() == 'darwin'
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stroid_ext_rpath = '@loader_path/lib'
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else
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stroid_ext_rpath = '$ORIGIN/lib'
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endif
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py_sources = [
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meson.project_source_root() + '/src/python/bindings.cpp',
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meson.project_source_root() + '/src/python/config/bindings.cpp',
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meson.project_source_root() + '/src/python/exceptions/bindings.cpp',
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meson.project_source_root() + '/src/python/IO/bindings.cpp',
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meson.project_source_root() + '/src/python/refinement/bindings.cpp',
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meson.project_source_root() + '/src/python/utils/bindings.cpp',
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]
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py_mod = py_installation.extension_module(
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'_stroid',
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sources: py_sources,
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dependencies: stroid_py_deps,
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install: true,
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link_args: stroid_ext_rpath_args,
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build_rpath: stroid_ext_rpath,
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install_rpath: stroid_ext_rpath,
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subdir: 'stroid',
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)
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py_installation.install_sources(
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meson.project_source_root() + '/src/python/stroid/__init__.py',
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subdir: 'stroid',
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)
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else
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message('Python bindings disabled')
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endif
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@@ -1,4 +1,4 @@
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project('stroid', 'cpp', meson_version : '>= 1.3.0', version : 'v0.3.0', default_options : ['cpp_std=c++23'])
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project('stroid', 'cpp', meson_version : '>= 1.3.0', version : 'v0.4.0', default_options : ['cpp_std=c++23'])
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subdir('build-check')
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@@ -13,6 +13,10 @@ if get_option('build_tools')
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subdir('tools')
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endif
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if get_option('build_python')
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subdir('build-python')
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endif
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if get_option('pkg_config')
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pkg = import('pkgconfig')
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pkg.generate(
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@@ -20,7 +24,7 @@ if get_option('pkg_config')
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description: 'Stroid multi-block curvilinear mesh generation library',
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version: meson.project_version(),
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libraries: [
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stroid_lib
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libstroid
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],
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subdirs: ['stroid'],
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filebase: 'stroid',
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@@ -1,3 +1,4 @@
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option('pkg_config', type: 'boolean', value: false, description: 'generate pkg-config file for stroid')
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option('build_tests', type: 'boolean', value: true, description: 'compile subproject tests')
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option('build_tools', type: 'boolean', value: true, description: 'compile stroid command line tools')
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option('build_tools', type: 'boolean', value: true, description: 'compile stroid command line tools')
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option('build_python', type: 'boolean', value: true, description: 'compile stroid python bindings')
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25
pyproject.toml
Normal file
25
pyproject.toml
Normal file
@@ -0,0 +1,25 @@
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[build-system]
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requires = ["meson-python>=0.19.0", "meson>=1.9.1", "pybind11==3.0.0", "fourdst==0.10.6"]
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build-backend = "mesonpy"
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[project]
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name = "stroid"
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dynamic = ["version"]
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description = "O-grid mesh generation with multiple domains"
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readme = "README.md"
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license = { file = "LICENSE.txt" }
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authors = [
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{name = "Emily M. Boudreaux", email = "emily@boudreauxmail.com"},
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]
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maintainers = [
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{name = "Emily M. Boudreaux", email = "emily@boudreauxmail.com"}
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]
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[tool.meson-python.args]
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setup = [
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'-Dbuild_tools=false',
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'-Dbuild_tests=false',
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'-Dpkg_config=false'
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]
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install = ['--skip-subprojects']
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@@ -1,7 +1,12 @@
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#pragma once
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#include <string>
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#include <expected>
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#include <istream>
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#include "mfem.hpp"
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#include "stroid/utils/types.h"
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namespace stroid::IO {
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/**
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* @brief Visualization modes for GLVis display.
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@@ -15,18 +20,43 @@ namespace stroid::IO {
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BOUNDARY_ELEMENT_ID
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};
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void SaveStroidMesh(const StroidMesh& mesh, const std::string& filename, const std::string& comment="");
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/**
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* @brief Save a mesh to MFEM's native `.mesh` format.
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* @param mesh Mesh to serialize.
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* @param filename Output path (including extension).
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*/
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void SaveMesh(const mfem::Mesh& mesh, const std::string& filename);
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/**
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* @brief Overload of SaveMesh which accepts a StroidMesh type and will internally unpack it
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* @param mesh StroidMesh to serialize.
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* @param filename Path to save to
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*
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* @note This function is a utility wrapper to save a StroidMesh object in MFEM's native .mesh format. Data other than the mesh pointer
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* in StroidMesh **will not be saved** (e.g. the reference mesh, the number of refinement levels, etc..). If you need to serialize an
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* entire StroidMesh then please use the stroid::IO::SaveStroidMesh function
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*/
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void SaveMesh(const stroid::StroidMesh& mesh, const std::string& filename);
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/**
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* @brief Save a mesh as a ParaView VTU dataset.
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* @param mesh Mesh to export.
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* @param exportName Output base name (ParaView will add extensions).
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*/
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void SaveVTU(mfem::Mesh& mesh, const std::string& exportName);
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/**
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* @brief Overload of SaveVTU which accepts a StroidMesh type and will internally unpack it
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* @param mesh StroidMesh to serialize.
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* @param filename Path to save to
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*
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* @note This function is a utility wrapper to save a StroidMesh object in MFEM's native .mesh format. Data other than the mesh pointer
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* in StroidMesh **will not be saved** (e.g. the reference mesh, the number of refinement levels, etc..). If you need to serialize an
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* entire StroidMesh then please use the stroid::IO::SaveStroidVTU function
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*/
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void SaveVTU(const stroid::StroidMesh& mesh, const std::string& exportName);
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/**
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* @brief Stream a mesh to a running GLVis server for interactive viewing.
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* @param mesh Mesh to display.
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@@ -36,9 +66,22 @@ namespace stroid::IO {
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* @param visport GLVis server port.
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*/
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void ViewMesh(mfem::Mesh &mesh, const std::string& title, VISUALIZATION_MODE mode, const std::string &vishost, int visport);
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void ViewMesh(const stroid::StroidMesh& mesh, const std::string& title, VISUALIZATION_MODE mode, const std::string &vishost, int visport);
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/**
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* @brief Visualize boundary face valence (1=surface, 2=internal).
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* @param mesh Mesh whose boundary faces are inspected.
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*/
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void VisualizeFaceValence(mfem::Mesh& mesh);
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void VisualizeFaceValence(mfem::Mesh& mesh, const std::string &vishost, int visport);
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void VisualizeFaceValence(const stroid::StroidMesh& mesh, const std::string &vishost, int visport);
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std::expected<StroidMesh, std::string> ParseStroidMesh(std::istream& is);
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std::expected<StroidMesh, std::string> LoadStroidMesh(const std::string& filename);
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#ifdef MFEM_USE_MPI
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std::expected<StroidMesh, std::string> ParseStroidMesh(std::istream& is, MPI_Comm comm);
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std::expected<StroidMesh, std::string> LoadStroidMesh(const std::string& filename, MPI_Comm comm);
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#endif
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}
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@@ -1,6 +1,8 @@
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#pragma once
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#include <cstdint>
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#include <optional>
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#include <string>
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namespace stroid::config {
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@@ -76,6 +78,13 @@ namespace stroid::config {
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*/
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std::optional<double> core_steepness = 1.0;
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/**
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* @brief Continuity order for the core-envelope transition (0 = discontinuous, 1 = C1, 2 = C2).
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* @section toml
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* - [main].continuity_order
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*/
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std::optional<size_t> continuity_order = 2;
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/**
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* @brief Boundary attribute id for stellar surface
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* @section toml
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@@ -112,5 +121,6 @@ namespace stroid::config {
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std::optional<size_t> vacuum_id = 3;
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std::optional<OptimizationMethods> optimization_methods = OptimizationMethods{true, true};
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};
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}
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3
src/include/stroid/exceptions/exceptions.h
Normal file
3
src/include/stroid/exceptions/exceptions.h
Normal file
@@ -0,0 +1,3 @@
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#pragma once
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#include "stroid/exceptions/stroid_error.h"
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25
src/include/stroid/exceptions/stroid_error.h
Normal file
25
src/include/stroid/exceptions/stroid_error.h
Normal file
@@ -0,0 +1,25 @@
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#pragma once
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#include <exception>
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#include <string>
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namespace stroid::exceptions {
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class StroidError : public std::exception {
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public:
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explicit StroidError(std::string message) : m_msg(std::move(message)) {}
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const char* what() const noexcept override { return m_msg.c_str(); }
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private:
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std::string m_msg;
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};
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class StroidContinuityError : public StroidError {
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using StroidError::StroidError;
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};
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class StroidMeshError : public StroidError {
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using StroidError::StroidError;
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};
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class StroidMissingReferenceMesh : public StroidMeshError {
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using StroidMeshError::StroidMeshError;
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};
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}
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@@ -21,8 +21,8 @@ config.set('STROID_VERSION_PATCH', ver_parts[2])
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config.set('STROID_VERSION_TAG', ver_parts[3])
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configure_file(
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input : 'stroid.h.in',
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output : 'stroid.h',
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input : 'version.h.in',
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output : 'version.h',
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configuration : config ,
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install: true,
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install_dir: get_option('includedir') / 'stroid'
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7
src/include/stroid/refinement/uniform.h
Normal file
7
src/include/stroid/refinement/uniform.h
Normal file
@@ -0,0 +1,7 @@
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#pragma once
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#include "stroid/utils/types.h"
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namespace stroid::refinement {
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void UniformRefinement(StroidMesh& mesh, size_t levels);
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}
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@@ -7,6 +7,9 @@
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||||
#include "stroid/topology/optimize.h"
|
||||
#include "stroid/utils/mesh_utils.h"
|
||||
#include "stroid/IO/mesh.h"
|
||||
#include "stroid/utils/types.h"
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#include "stroid/refinement/uniform.h"
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#include "stroid/utils/mesh_stats.h"
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||||
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||||
/**
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||||
* @namespace stroid
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||||
@@ -45,46 +48,36 @@
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* @endcode
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*/
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namespace stroid {
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||||
/**
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* @brief Version helpers for the stroid library.
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*/
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||||
struct version {
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||||
static constexpr int major = @STROID_VERSION_MAJOR@;
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||||
static constexpr int minor = @STROID_VERSION_MINOR@;
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||||
static constexpr int patch = @STROID_VERSION_PATCH@;
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static constexpr const char* tag = "@STROID_VERSION_TAG@";
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inline StroidMesh GenerateMesh(const fourdst::config::Config<stroid::config::MeshConfig>& cfg) {
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StroidMesh sm;
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sm.config = *cfg;
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auto reference = stroid::topology::BuildSkeleton(cfg);
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||||
stroid::topology::Finalize(*reference, cfg);
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sm.refinement_levels = cfg->refinement_levels.value_or(0);
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||||
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||||
static std::string toString() {
|
||||
std::string versionStr = std::to_string(major) + "." +
|
||||
std::to_string(minor) + "." +
|
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std::to_string(patch);
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||||
if (std::string(tag) != "") {
|
||||
versionStr += "-" + std::string(tag);
|
||||
}
|
||||
return versionStr;
|
||||
sm.reference_mesh = std::move(reference);
|
||||
sm.mesh = utils::BuildProjected(*sm.reference_mesh, cfg);
|
||||
if (cfg->optimization_methods.has_value() && cfg->optimization_methods.value().tmop.has_value() && cfg->optimization_methods.value().tmop.value()) {
|
||||
stroid::topology::ApplyTMOP(*sm.mesh, cfg);
|
||||
}
|
||||
return sm;
|
||||
}
|
||||
inline StroidMesh GenerateMesh(const stroid::config::MeshConfig& config) {
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||||
fourdst::config::Config<config::MeshConfig> cfg;
|
||||
auto Mutator = [&config](config::MeshConfig& orig) {
|
||||
orig = config;
|
||||
};
|
||||
|
||||
friend std::ostream& operator<<(std::ostream& os, const version&) {
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||||
os << toString();
|
||||
return os;
|
||||
}
|
||||
};
|
||||
cfg.mutate(Mutator);
|
||||
return GenerateMesh(cfg);
|
||||
}
|
||||
inline StroidMesh GenerateMesh(const std::string& filename) {
|
||||
fourdst::config::Config<stroid::config::MeshConfig> config;
|
||||
config.load(filename);
|
||||
return GenerateMesh(config);
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* @namespace std
|
||||
* @brief Standard library extensions used by stroid.
|
||||
*
|
||||
* Provides a `std::formatter` specialization for `stroid::version` so it can
|
||||
* be used with `std::format` and related APIs.
|
||||
*/
|
||||
// Overload format struct
|
||||
template <>
|
||||
struct std::formatter<stroid::version> : std::formatter<std::string> {
|
||||
auto format(const stroid::version& v, auto& ctx) {
|
||||
return std::formatter<std::string>::format(stroid::version::toString(), ctx);
|
||||
}
|
||||
};
|
||||
|
||||
/**
|
||||
* @namespace stroid::config
|
||||
174
src/include/stroid/utils/mesh_stats.h
Normal file
174
src/include/stroid/utils/mesh_stats.h
Normal file
@@ -0,0 +1,174 @@
|
||||
#pragma once
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include "stroid/utils/types.h"
|
||||
#include "stroid/config/config.h"
|
||||
|
||||
#include <cstdint>
|
||||
#include <optional>
|
||||
#include <string>
|
||||
#include <vector>
|
||||
|
||||
namespace stroid::stats {
|
||||
enum class MeshStatFeatures : uint32_t {
|
||||
NONE = 0u,
|
||||
RADIUS = 1u << 0,
|
||||
AXES = 1u << 1,
|
||||
ELLIPTICITY = 1u << 2,
|
||||
BOWING = 1u << 3,
|
||||
CONFORMITY = 1u << 4,
|
||||
JACOBIAN = 1u << 5,
|
||||
VOLUME_AREA = 1u << 6,
|
||||
ELEMENT_COUNT = 1u << 7,
|
||||
MESH_SIZE = 1u << 8,
|
||||
OUTER_BOUNDS = 1u << 9,
|
||||
CENTROID = 1u << 10,
|
||||
CONFIG_META = 1u << 11,
|
||||
BOUNDING_BOX = 1u << 12,
|
||||
};
|
||||
|
||||
constexpr MeshStatFeatures operator|(MeshStatFeatures lhs, MeshStatFeatures rhs) {
|
||||
return static_cast<MeshStatFeatures>(static_cast<uint32_t>(lhs) | static_cast<uint32_t>(rhs));
|
||||
}
|
||||
|
||||
constexpr MeshStatFeatures operator&(MeshStatFeatures lhs, MeshStatFeatures rhs) {
|
||||
return static_cast<MeshStatFeatures>(static_cast<uint32_t>(lhs) & static_cast<uint32_t>(rhs));
|
||||
}
|
||||
|
||||
constexpr bool has_feature(MeshStatFeatures feature, MeshStatFeatures set) {
|
||||
return (static_cast<uint32_t>(set) & static_cast<uint32_t>(feature)) != 0u;
|
||||
}
|
||||
|
||||
inline constexpr MeshStatFeatures MESH_STAT_DEFAULT =
|
||||
MeshStatFeatures::RADIUS | MeshStatFeatures::AXES | MeshStatFeatures::ELLIPTICITY |
|
||||
MeshStatFeatures::CONFORMITY | MeshStatFeatures::CONFIG_META;
|
||||
|
||||
inline constexpr auto MESH_STAT_ALL = static_cast<MeshStatFeatures>(0xFFFFFFFFu);
|
||||
|
||||
struct RadiusStats {
|
||||
double min = 0, max = 0, mean = 0, stddev = 0;
|
||||
long n_samples = 0;
|
||||
};
|
||||
|
||||
struct AxisStats {
|
||||
double semi_major = 0;
|
||||
double semi_minor = 0;
|
||||
};
|
||||
|
||||
struct EllipticityStats {
|
||||
double flattening = 0;
|
||||
double polar_equatorial = 1;
|
||||
double radius_uniformity = 1;
|
||||
};
|
||||
|
||||
struct BowingStats {
|
||||
double max_inward = 0;
|
||||
double max_outward = 0;
|
||||
double rms = 0;
|
||||
double worst_at_radius = 0;
|
||||
};
|
||||
|
||||
struct ConformityStats {
|
||||
bool conforming = true;
|
||||
long n_nonconforming_faces = 0;
|
||||
};
|
||||
|
||||
struct JacobianStats {
|
||||
double detJ_min;
|
||||
double detJ_max;
|
||||
long n_flipped;
|
||||
double min_detJ_ratio;
|
||||
double worst_ratio_at_radius;
|
||||
double detJ_min_at_radius;
|
||||
long n_elements;
|
||||
};
|
||||
struct VolumeAreaStats {
|
||||
double stellar_volume = 0, surface_area = 0;
|
||||
double analytic_volume = 0, analytic_area = 0;
|
||||
};
|
||||
|
||||
struct ElementCounts {
|
||||
long total = 0, core = 0, envelope = 0, vacuum = 0, other = 0;
|
||||
long n_vertices = 0;
|
||||
};
|
||||
|
||||
struct MeshSizeStats {
|
||||
double h_min = 0, h_max = 0, h_mean = 0, h_stddev = 0;
|
||||
};
|
||||
|
||||
struct OuterBoundsStats {
|
||||
double min = 0, max = 0, mean = 0;
|
||||
long n_samples = 0;
|
||||
};
|
||||
|
||||
struct CentroidStats {
|
||||
double x = 0, y = 0, z = 0, offset = 0;
|
||||
};
|
||||
|
||||
struct ConfigMeta {
|
||||
double r_core = 0, r_star = 0, flattening = 0, r_infinity = 0;
|
||||
int geom_order = 0;
|
||||
size_t refinement_levels = 0;
|
||||
bool has_external_domain = true;
|
||||
};
|
||||
|
||||
struct BoundingBox {
|
||||
double xMin = 0, xMax = 0, yMin = 0, yMax = 0, zMin = 0, zMax = 0;
|
||||
bool valid = false;
|
||||
|
||||
[[nodiscard]] double dx() const {return xMax - xMin;}
|
||||
[[nodiscard]] double dy() const {return yMax - yMin;}
|
||||
[[nodiscard]] double dz() const {return zMax - zMin;}
|
||||
[[nodiscard]] double diag() const {
|
||||
const double a = dx(), b = dy(), c = dz();
|
||||
return std::sqrt(a*a + b*b + c*c);
|
||||
}
|
||||
};
|
||||
|
||||
struct BoundingBoxStats {
|
||||
BoundingBox core;
|
||||
BoundingBox star;
|
||||
BoundingBox vacuum;
|
||||
};
|
||||
|
||||
struct MeshStats {
|
||||
MeshStatFeatures computed = MeshStatFeatures::NONE;
|
||||
std::optional<RadiusStats> radius;
|
||||
std::optional<AxisStats> axes;
|
||||
std::optional<EllipticityStats> ellipticity;
|
||||
std::optional<BowingStats> bowing;
|
||||
std::optional<ConformityStats> conformity;
|
||||
std::optional<JacobianStats> jacobian;
|
||||
std::optional<JacobianStats> jacobian_stellar;
|
||||
std::optional<JacobianStats> jacobian_vacuum;
|
||||
std::optional<VolumeAreaStats> volume;
|
||||
std::optional<ElementCounts> element_counts;
|
||||
std::optional<MeshSizeStats> mesh_size;
|
||||
std::optional<OuterBoundsStats> outer_bounds;
|
||||
std::optional<CentroidStats> centroid;
|
||||
std::optional<ConfigMeta> config_meta;
|
||||
std::optional<BoundingBoxStats> bounding_box;
|
||||
|
||||
std::vector<std::string> warnings;
|
||||
std::vector<std::string> errors;
|
||||
};
|
||||
|
||||
MeshStats ComputeMeshStats(const StroidMesh& sm, MeshStatFeatures features = MESH_STAT_DEFAULT, int sample_order = -1);
|
||||
|
||||
std::string to_string(const MeshStats& s);
|
||||
|
||||
inline std::ostream& operator<<(std::ostream& os, const MeshStats& s) {
|
||||
return os << to_string(s);
|
||||
}
|
||||
}
|
||||
|
||||
template <>
|
||||
struct std::formatter<stroid::stats::MeshStats, char> {
|
||||
static constexpr auto parse(const std::format_parse_context& ctx) {
|
||||
return ctx.begin();
|
||||
}
|
||||
|
||||
static auto format(const stroid::stats::MeshStats &s, std::format_context& ctx) {
|
||||
return std::format_to(ctx.out(), "{}", stroid::stats::to_string(s));
|
||||
}
|
||||
};
|
||||
@@ -2,6 +2,9 @@
|
||||
|
||||
#include "mfem.hpp"
|
||||
|
||||
#include "stroid/config/config.h"
|
||||
#include "fourdst/config/config.h"
|
||||
|
||||
namespace stroid::utils {
|
||||
/**
|
||||
* @brief Mark elements with negative Jacobian determinant.
|
||||
@@ -15,4 +18,9 @@ namespace stroid::utils {
|
||||
* @param mesh Mesh to scan and update in-place.
|
||||
*/
|
||||
void MarkFlippedBoundaryElements(mfem::Mesh& mesh);
|
||||
|
||||
void ExportJacobianRadialProfile(mfem::Mesh& mesh, const std::string& filename);
|
||||
|
||||
std::unique_ptr<mfem::Mesh> BuildProjected(const mfem::Mesh& reference, const fourdst::config::Config<config::MeshConfig>& cfg);
|
||||
|
||||
}
|
||||
65
src/include/stroid/utils/types.h
Normal file
65
src/include/stroid/utils/types.h
Normal file
@@ -0,0 +1,65 @@
|
||||
#pragma once
|
||||
|
||||
#include "mfem.hpp"
|
||||
|
||||
#include "stroid/config/config.h"
|
||||
|
||||
#include <memory>
|
||||
#include <expected>
|
||||
#include <string>
|
||||
#include <unordered_map>
|
||||
#include <variant>
|
||||
|
||||
namespace stroid {
|
||||
enum class MFEM_MESH_TYPE {
|
||||
SERIAL,
|
||||
PARALLEL
|
||||
};
|
||||
|
||||
struct StroidMesh {
|
||||
MFEM_MESH_TYPE type;
|
||||
std::unique_ptr<mfem::Mesh> mesh;
|
||||
std::unique_ptr<mfem::Mesh> reference_mesh;
|
||||
config::MeshConfig config;
|
||||
size_t refinement_levels;
|
||||
|
||||
[[nodiscard]] std::expected<mfem::Mesh*, std::string> as_mesh() const {
|
||||
if (type == MFEM_MESH_TYPE::SERIAL) {
|
||||
return mesh.get();
|
||||
}
|
||||
return std::unexpected{"Mesh is not serial. Try calling as_par_mesh()"};
|
||||
}
|
||||
|
||||
[[nodiscard]] std::expected<mfem::Mesh*, std::string> ref_as_mesh() const {
|
||||
if (type == MFEM_MESH_TYPE::SERIAL) {
|
||||
return reference_mesh.get();
|
||||
}
|
||||
return std::unexpected{"Reference mesh is not serial. Try calling as_par_mesh()"};
|
||||
}
|
||||
|
||||
[[nodiscard]] std::expected<std::unordered_map<std::string, std::variant<int, double, std::string, bool>>, std::string> mesh_stats(bool use_ref_mesh = false) const {
|
||||
if (type != MFEM_MESH_TYPE::SERIAL) {
|
||||
return std::unexpected{"Mesh is not serial. Mesh stats currently only supports serial meshes."};
|
||||
}
|
||||
|
||||
mfem::Mesh* umesh;
|
||||
if (use_ref_mesh) {
|
||||
umesh = reference_mesh.get();
|
||||
} else {
|
||||
umesh = mesh.get();
|
||||
}
|
||||
std::unordered_map<std::string, std::variant<int, double, std::string, bool>> mesh_stats;
|
||||
mesh_stats.emplace("num_elements", umesh->GetNE());
|
||||
mesh_stats.emplace("num_vertices", umesh->GetNV());
|
||||
mesh_stats.emplace("num_edges", umesh->GetNEdges());
|
||||
mesh_stats.emplace("num_faces", umesh->GetNFaces());
|
||||
mesh_stats.emplace("num_boundary_elements", umesh->GetNBE());
|
||||
mesh_stats.emplace("max_bdr_attribute_id", umesh->bdr_attributes.Max());
|
||||
mesh_stats.emplace("min_bdr_attribute_id", umesh->bdr_attributes.Min());
|
||||
mesh_stats.emplace("max_element_attribute_id", umesh->attributes.Max());
|
||||
mesh_stats.emplace("min_element_attribute_id", umesh->attributes.Min());
|
||||
|
||||
return mesh_stats;
|
||||
}
|
||||
};
|
||||
}
|
||||
46
src/include/stroid/version.h.in
Normal file
46
src/include/stroid/version.h.in
Normal file
@@ -0,0 +1,46 @@
|
||||
#pragma once
|
||||
|
||||
#include <string>
|
||||
#include <ostream>
|
||||
|
||||
namespace stroid {
|
||||
/**
|
||||
* @brief Version helpers for the stroid library.
|
||||
*/
|
||||
struct version {
|
||||
static constexpr int major = @STROID_VERSION_MAJOR@;
|
||||
static constexpr int minor = @STROID_VERSION_MINOR@;
|
||||
static constexpr int patch = @STROID_VERSION_PATCH@;
|
||||
static constexpr const char* tag = "@STROID_VERSION_TAG@";
|
||||
|
||||
static std::string toString() {
|
||||
std::string versionStr = std::to_string(major) + "." +
|
||||
std::to_string(minor) + "." +
|
||||
std::to_string(patch);
|
||||
if (std::string(tag) != "") {
|
||||
versionStr += "-" + std::string(tag);
|
||||
}
|
||||
return versionStr;
|
||||
}
|
||||
|
||||
friend std::ostream& operator<<(std::ostream& os, const version&) {
|
||||
os << toString();
|
||||
return os;
|
||||
}
|
||||
};
|
||||
}
|
||||
|
||||
/**
|
||||
* @namespace std
|
||||
* @brief Standard library extensions used by stroid.
|
||||
*
|
||||
* Provides a `std::formatter` specialization for `stroid::version` so it can
|
||||
* be used with `std::format` and related APIs.
|
||||
*/
|
||||
// Overload format struct
|
||||
template <>
|
||||
struct std::formatter<stroid::version> : std::formatter<std::string> {
|
||||
auto format(const stroid::version& v, auto& ctx) {
|
||||
return std::formatter<std::string>::format(stroid::version::toString(), ctx);
|
||||
}
|
||||
};
|
||||
@@ -2,12 +2,428 @@
|
||||
#include "stroid/config/config.h"
|
||||
#include "stroid/IO/mesh.h"
|
||||
|
||||
#include <charconv>
|
||||
|
||||
#include "stroid/version.h"
|
||||
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
#include <cstdint>
|
||||
#include <format>
|
||||
#include <chrono>
|
||||
|
||||
namespace stroid::IO {
|
||||
|
||||
namespace {
|
||||
std::string format_header(const StroidMesh& mesh, const std::string& comment) {
|
||||
auto now = std::chrono::system_clock::now();
|
||||
version v;
|
||||
|
||||
std::stringstream vs;
|
||||
vs << v;
|
||||
|
||||
std::string header = std::format(R"(# STROID MESH
|
||||
# NOTE: STROID MESH IS A THIN WRAPPER AROUND MFEM's NATIVE MESH FORMAT
|
||||
# STRUCTURE:
|
||||
# - Type : Serial or Parallel (S for Serial, P for Parallel)
|
||||
# - mesh : the primary computational domain which can be of n order and be h-refined
|
||||
# - reference mesh : a reference, linear order mesh, used to ensure that the primary mesh remains well formed
|
||||
# - config : The configuration options initially used to generate the mesh
|
||||
# - refinement-levels : the total number of refinement levels the primary mesh has been subjected too
|
||||
# NOTE: EACH BLOCK OF DATA IS STORED BETWEEN "BEGIN BLOCK <NAME>\n ... \nEND BLOCK <NAME>
|
||||
# PARSING THE UNDERLYING MFEM NATIVE MESH FORMAT CAN BE DONE WITH MFEM'S STREAM READER
|
||||
# IF YOU EXTRACT THE RAW CONTENTS BETWEEN THOSE LINES
|
||||
BEGIN BLOCK HEADER
|
||||
MESH_TYPE:{}
|
||||
REFINEMENT_LEVELS:{}
|
||||
DATE_CREATED:{:%Y-%m-%d}
|
||||
COMMENT:{}
|
||||
STROID_VERSION:{}
|
||||
END BLOCK HEADER)",
|
||||
mesh.type == MFEM_MESH_TYPE::PARALLEL ? "P" : "S",
|
||||
mesh.refinement_levels,
|
||||
now,
|
||||
comment,
|
||||
vs.str(),
|
||||
mesh.refinement_levels
|
||||
);
|
||||
return header;
|
||||
}
|
||||
|
||||
std::string format_primary_mesh(const StroidMesh& mesh) {
|
||||
std::stringstream ss;
|
||||
ss.precision(8);
|
||||
mesh.mesh->Print(ss);
|
||||
|
||||
std::string pmesh = std::format("BEGIN BLOCK PMESH\n{}END BLOCK PMESH", ss.str());
|
||||
|
||||
return pmesh;
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
std::string format_opt(const std::optional<T> opt, T default_val) {
|
||||
if (opt.has_value()) {
|
||||
return std::format("{}", opt.value());
|
||||
}
|
||||
return std::format("{}", default_val);
|
||||
|
||||
}
|
||||
|
||||
std::string format_reference_mesh(const StroidMesh& mesh) {
|
||||
std::stringstream ss;
|
||||
ss.precision(8);
|
||||
mesh.reference_mesh->Print(ss);
|
||||
|
||||
std::string rmesh = std::format("BEGIN BLOCK RMESH\n{}END BLOCK RMESH", ss.str());
|
||||
return rmesh;
|
||||
}
|
||||
|
||||
std::string format_config(const StroidMesh& mesh) {
|
||||
config::MeshConfig d;
|
||||
|
||||
config::OptimizationMethods d_opt = d.optimization_methods.value_or(config::OptimizationMethods{false, true});
|
||||
config::OptimizationMethods m_opt = mesh.config.optimization_methods.value_or(d_opt);
|
||||
|
||||
std::string config_str = std::format(R"(BEGIN BLOCK CONFIG
|
||||
# refiniment_levels: Initial number of levels of refinmenet, note the value in the header may be more up to date
|
||||
# std::optional<int>
|
||||
# default: 4
|
||||
refinement_levels:{}
|
||||
|
||||
# order: Polynomial / geometric order to use when constructing the mesh
|
||||
# std::optional<int>
|
||||
# default: 3
|
||||
order:{}
|
||||
|
||||
# include_external_domain: Whether or not to include the external domain in the mesh generally used for applying boundary conditions at infinity
|
||||
# std::optional<bool>
|
||||
# default: true
|
||||
include_external_domain:{}
|
||||
|
||||
# r_core: the radius of the stellar core region (in reference space)
|
||||
# std::optional<double>
|
||||
# default: 0.25
|
||||
r_core:{}
|
||||
|
||||
# r_star: the radius of the stellar surface (in reference space)
|
||||
# std::optional<double>
|
||||
# default: 1.0
|
||||
r_star:{}
|
||||
|
||||
# flattening: the flattening of the star (in reference space) where 0 is spherical and >0 is oblate. Note that this parameter is not equivalent to solving for the structure of a rotating model
|
||||
# std::optional<float>
|
||||
# default: 0.0
|
||||
flattening:{}
|
||||
|
||||
# r_infinity: the radius of the outer boundary of the mesh (in reference space)
|
||||
# std::optional<double>
|
||||
# default: 6.0
|
||||
r_infinity:{}
|
||||
|
||||
# r_instability: the radius inside which computations of geometry are skipped to avoid a core singularity
|
||||
# std::optional<double>
|
||||
# default: 1e-14
|
||||
r_instability:{}
|
||||
|
||||
# core_steepness: Controls the rate of transition of the core-to-envelope transition
|
||||
# std::optional<double>
|
||||
# default: 1.0
|
||||
core_steepness:{}
|
||||
|
||||
# continuity_order: order of continuity to force from teh core-envelope transition (0 = discontinuous, 1=C1 continuity, etc...)
|
||||
# std::optional<double>
|
||||
# default: 2
|
||||
continuity_order:{}
|
||||
|
||||
# surface_bdr_id: the boundary id to tag the stellar surface boundary elements as
|
||||
# std::optional<size_t>
|
||||
# default: 1
|
||||
surface_bdr_id:{}
|
||||
|
||||
# inf_bdr_id: the boundary id to tag the outer boundary elements as
|
||||
# std::optional<size_t>
|
||||
# default: 2
|
||||
inf_bdr_id:{}
|
||||
|
||||
# core_id: the material attribute to tag elements in the core region as
|
||||
# std::optional<size_t>
|
||||
# default 1
|
||||
core_id:{}
|
||||
|
||||
# envelope_id: the material attribute to tag elements in the envelope as
|
||||
# std::optional<size_t>
|
||||
# default 2
|
||||
envelope_id:{}
|
||||
|
||||
# vacuum_id: the material attribute to tag elements in the vacuum region as
|
||||
# std::optional<size_t>
|
||||
# default 3
|
||||
vacuum_id:{}
|
||||
|
||||
# optimization_method: struct for storing which optimization methods are being used
|
||||
# includes tmop and smoothstep booleans
|
||||
optimization_methods-tmop:{}
|
||||
optimization_methods-smoothstep:{}
|
||||
END BLOCK CONFIG)",
|
||||
format_opt(mesh.config.refinement_levels, d.refinement_levels.value()),
|
||||
format_opt(mesh.config.order, d.order.value()),
|
||||
format_opt(mesh.config.include_external_domain, d.include_external_domain.value()),
|
||||
format_opt(mesh.config.r_core, d.r_core.value()),
|
||||
format_opt(mesh.config.r_star, d.r_star.value()),
|
||||
format_opt(mesh.config.flattening, d.flattening.value()),
|
||||
format_opt(mesh.config.r_infinity, d.r_infinity.value()),
|
||||
format_opt(mesh.config.r_instability, d.r_instability.value()),
|
||||
format_opt(mesh.config.core_steepness, d.core_steepness.value()),
|
||||
format_opt(mesh.config.continuity_order, d.continuity_order.value()),
|
||||
format_opt(mesh.config.surface_bdr_id, d.surface_bdr_id.value()),
|
||||
format_opt(mesh.config.inf_bdr_id, d.inf_bdr_id.value()),
|
||||
format_opt(mesh.config.core_id, d.core_id.value()),
|
||||
format_opt(mesh.config.envelope_id, d.envelope_id.value()),
|
||||
format_opt(mesh.config.vacuum_id, d.vacuum_id.value()),
|
||||
m_opt.tmop.value_or(false),
|
||||
m_opt.smoothstep.value_or(true));
|
||||
|
||||
return config_str;
|
||||
}
|
||||
}
|
||||
|
||||
namespace {
|
||||
constexpr std::string_view BEGIN_PREFIX = "BEGIN BLOCK ";
|
||||
constexpr std::string_view END_PREFIX = "END BLOCK ";
|
||||
|
||||
std::string_view trim(std::string_view s) {
|
||||
const auto b = s.find_first_not_of(" \t\r\n");
|
||||
if (b == std::string_view::npos) return {};
|
||||
const auto e = s.find_last_not_of(" \t\r\n");
|
||||
return s.substr(b, e - b + 1);
|
||||
}
|
||||
|
||||
|
||||
std::expected<bool, std::string> parse_bool(std::string_view v) {
|
||||
std::string s(trim(v));
|
||||
std::ranges::transform(s, s.begin(),
|
||||
[](const unsigned char c) { return static_cast<char>(std::tolower(c)); });
|
||||
if (s == "true" || s == "1") return true;
|
||||
if (s == "false" || s == "0") return false;
|
||||
return std::unexpected(std::format("invalid bool value '{}'", v));
|
||||
}
|
||||
|
||||
template <std::integral T>
|
||||
std::expected<T, std::string> parse_int(std::string_view v) {
|
||||
const std::string_view s = trim(v);
|
||||
T out{};
|
||||
if (const auto res = std::from_chars(s.data(), s.data() + s.size(), out); res.ec != std::errc{} || res.ptr != s.data() + s.size())
|
||||
return std::unexpected(std::format("invalid integer value '{}'", v));
|
||||
return out;
|
||||
}
|
||||
|
||||
std::expected<double, std::string> parse_double(std::string_view v) {
|
||||
const std::string_view s = trim(v);
|
||||
double out{};
|
||||
if (const auto [ptr, ec] = std::from_chars(s.data(), s.data() + s.size(), out); ec != std::errc{} || ptr != s.data() + s.size())
|
||||
return std::unexpected(std::format("invalid floating-point value '{}'", v));
|
||||
return out;
|
||||
}
|
||||
|
||||
std::expected<std::map<std::string, std::string>, std::string> extract_blocks(std::istream& is) {
|
||||
std::map<std::string, std::string> blocks;
|
||||
std::string line;
|
||||
std::string current;
|
||||
std::string buffer;
|
||||
bool in_block = false;
|
||||
|
||||
while (std::getline(is, line)) {
|
||||
const std::string_view t = trim(line);
|
||||
|
||||
if (!in_block) {
|
||||
if (t.starts_with(BEGIN_PREFIX)) {
|
||||
current = std::string(trim(t.substr(BEGIN_PREFIX.size())));
|
||||
if (current.empty())
|
||||
return std::unexpected("found 'BEGIN BLOCK' with no block name");
|
||||
if (blocks.contains(current))
|
||||
return std::unexpected(std::format("duplicate block '{}'", current));
|
||||
buffer.clear();
|
||||
in_block = true;
|
||||
}
|
||||
} else {
|
||||
if (t.starts_with(END_PREFIX)) {
|
||||
if (const std::string end_name(trim(t.substr(END_PREFIX.size()))); end_name != current)
|
||||
return std::unexpected(std::format(
|
||||
"mismatched block markers: opened '{}' but closed '{}'",
|
||||
current, end_name));
|
||||
blocks.emplace(std::move(current), std::move(buffer));
|
||||
current.clear();
|
||||
buffer.clear();
|
||||
in_block = false;
|
||||
} else {
|
||||
std::string_view raw = line;
|
||||
if (!raw.empty() && raw.back() == '\r') raw.remove_suffix(1);
|
||||
buffer.append(raw);
|
||||
buffer.push_back('\n');
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
if (in_block)
|
||||
return std::unexpected(std::format("unterminated block '{}' (missing END BLOCK)", current));
|
||||
return blocks;
|
||||
}
|
||||
|
||||
std::expected<void, std::string> parse_header(const std::string& content, StroidMesh& out) {
|
||||
std::istringstream iss(content);
|
||||
std::string line;
|
||||
std::optional<MFEM_MESH_TYPE> type;
|
||||
std::optional<size_t> ref_levels;
|
||||
|
||||
while (std::getline(iss, line)) {
|
||||
const std::string_view t = trim(line);
|
||||
if (t.empty() || t.starts_with('#')) continue;
|
||||
|
||||
const auto colon = t.find(':');
|
||||
if (colon == std::string_view::npos) continue;
|
||||
|
||||
const std::string_view key = trim(t.substr(0, colon));
|
||||
const std::string_view val = trim(t.substr(colon + 1));
|
||||
|
||||
if (key == "MESH_TYPE") {
|
||||
if (val == "P") type = MFEM_MESH_TYPE::PARALLEL;
|
||||
else if (val == "S") type = MFEM_MESH_TYPE::SERIAL;
|
||||
else return std::unexpected(std::format("unknown MESH_TYPE '{}'", val));
|
||||
} else if (key == "REFINEMENT_LEVELS") {
|
||||
auto r = parse_int<size_t>(val);
|
||||
if (!r) return std::unexpected("REFINEMENT_LEVELS: " + r.error());
|
||||
ref_levels = *r;
|
||||
}
|
||||
}
|
||||
|
||||
if (!type) return std::unexpected("HEADER block missing MESH_TYPE");
|
||||
out.type = *type;
|
||||
out.refinement_levels = ref_levels.value_or(0);
|
||||
return {};
|
||||
}
|
||||
|
||||
std::expected<config::MeshConfig, std::string> parse_config(const std::string& content) {
|
||||
config::MeshConfig cfg;
|
||||
config::OptimizationMethods opt =
|
||||
cfg.optimization_methods.value_or(config::OptimizationMethods{});
|
||||
|
||||
using Handler = std::function<std::expected<void, std::string>(std::string_view)>;
|
||||
|
||||
auto as_int = [](std::optional<int>* f) { return [f](const std::string_view v) -> std::expected<void, std::string> { auto r = parse_int<int>(v); if (!r) return std::unexpected(r.error()); *f = *r; return {}; }; };
|
||||
auto as_size = [](std::optional<size_t>* f) { return [f](const std::string_view v) -> std::expected<void, std::string> { auto r = parse_int<size_t>(v); if (!r) return std::unexpected(r.error()); *f = *r; return {}; }; };
|
||||
auto as_double = [](std::optional<double>* f) { return [f](const std::string_view v) -> std::expected<void, std::string> { auto r = parse_double(v); if (!r) return std::unexpected(r.error()); *f = *r; return {}; }; };
|
||||
auto as_bool = [](std::optional<bool>* f) { return [f](const std::string_view v) -> std::expected<void, std::string> { auto r = parse_bool(v); if (!r) return std::unexpected(r.error()); *f = *r; return {}; }; };
|
||||
|
||||
const std::unordered_map<std::string_view, Handler> handlers = {
|
||||
{"refinement_levels", as_int(&cfg.refinement_levels)},
|
||||
{"order", as_int(&cfg.order)},
|
||||
{"include_external_domain", as_bool(&cfg.include_external_domain)},
|
||||
{"r_core", as_double(&cfg.r_core)},
|
||||
{"r_star", as_double(&cfg.r_star)},
|
||||
{"flattening", as_double(&cfg.flattening)},
|
||||
{"r_infinity", as_double(&cfg.r_infinity)},
|
||||
{"r_instability", as_double(&cfg.r_instability)},
|
||||
{"core_steepness", as_double(&cfg.core_steepness)},
|
||||
{"continuity_order", as_size(&cfg.continuity_order)},
|
||||
{"surface_bdr_id", as_size(&cfg.surface_bdr_id)},
|
||||
{"inf_bdr_id", as_size(&cfg.inf_bdr_id)},
|
||||
{"core_id", as_size(&cfg.core_id)},
|
||||
{"envelope_id", as_size(&cfg.envelope_id)},
|
||||
{"vacuum_id", as_size(&cfg.vacuum_id)},
|
||||
{"optimization_methods-tmop", as_bool(&opt.tmop)},
|
||||
{"optimization_methods-smoothstep", as_bool(&opt.smoothstep)},
|
||||
};
|
||||
|
||||
std::istringstream iss(content);
|
||||
std::string line;
|
||||
while (std::getline(iss, line)) {
|
||||
const std::string_view t = trim(line);
|
||||
if (t.empty() || t.starts_with('#')) continue;
|
||||
|
||||
const auto colon = t.find(':');
|
||||
if (colon == std::string_view::npos) continue;
|
||||
|
||||
const std::string_view key = trim(t.substr(0, colon));
|
||||
const std::string_view val = trim(t.substr(colon + 1));
|
||||
|
||||
const auto it = handlers.find(key);
|
||||
if (it == handlers.end()) continue;
|
||||
if (auto r = it->second(val); !r)
|
||||
return std::unexpected(std::format("{}: {}", key, r.error()));
|
||||
}
|
||||
|
||||
cfg.optimization_methods = opt;
|
||||
return cfg;
|
||||
}
|
||||
|
||||
std::expected<std::unique_ptr<mfem::Mesh>, std::string> load_serial_mesh(const std::string& raw) {
|
||||
if (trim(raw).empty()) return std::unexpected("empty mesh block");
|
||||
std::istringstream iss(raw);
|
||||
try {
|
||||
return std::make_unique<mfem::Mesh>(iss);
|
||||
} catch (const std::exception& e) {
|
||||
return std::unexpected(std::string("MFEM failed to parse mesh: ") + e.what());
|
||||
}
|
||||
}
|
||||
|
||||
struct ParsedMeta {
|
||||
StroidMesh mesh;
|
||||
std::string pmesh_raw;
|
||||
std::string rmesh_raw;
|
||||
};
|
||||
|
||||
std::expected<ParsedMeta, std::string> parse_metadata(std::istream& is) {
|
||||
auto blocks = extract_blocks(is);
|
||||
if (!blocks) return std::unexpected(blocks.error());
|
||||
|
||||
auto need = [&](std::string_view name) -> std::expected<std::string, std::string> {
|
||||
const auto it = blocks->find(std::string(name));
|
||||
if (it == blocks->end())
|
||||
return std::unexpected(std::format("missing required block '{}'", name));
|
||||
return it->second;
|
||||
};
|
||||
|
||||
ParsedMeta pm{};
|
||||
|
||||
const auto header = need("HEADER");
|
||||
if (!header) return std::unexpected(header.error());
|
||||
if (auto r = parse_header(*header, pm.mesh); !r) return std::unexpected(r.error());
|
||||
|
||||
const auto config = need("CONFIG");
|
||||
if (!config) return std::unexpected(config.error());
|
||||
auto cfg = parse_config(*config);
|
||||
if (!cfg) return std::unexpected("CONFIG block -> " + cfg.error());
|
||||
pm.mesh.config = std::move(*cfg);
|
||||
|
||||
const auto pmesh = need("PMESH");
|
||||
if (!pmesh) return std::unexpected(pmesh.error());
|
||||
pm.pmesh_raw = *pmesh;
|
||||
|
||||
const auto rmesh = need("RMESH");
|
||||
if (!rmesh) return std::unexpected(rmesh.error());
|
||||
pm.rmesh_raw = *rmesh;
|
||||
|
||||
return pm;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
void SaveStroidMesh(const StroidMesh &mesh, const std::string &filename, const std::string &comment) {
|
||||
std::ofstream ofs(filename);
|
||||
|
||||
// First Write a header with some information
|
||||
std::string header = format_header(mesh, comment);
|
||||
|
||||
std::string pmesh = format_primary_mesh(mesh);
|
||||
std::string rmesh = format_reference_mesh(mesh);
|
||||
|
||||
std::string config = format_config(mesh);
|
||||
|
||||
ofs << header << "\n";
|
||||
ofs << pmesh << "\n";
|
||||
ofs << rmesh << "\n";
|
||||
ofs << config << "\n";
|
||||
}
|
||||
|
||||
void SaveMesh(const mfem::Mesh& mesh, const std::string& filename) {
|
||||
std::ofstream ofs(filename);
|
||||
@@ -15,6 +431,10 @@ namespace stroid::IO {
|
||||
mesh.Print(ofs);
|
||||
}
|
||||
|
||||
void SaveMesh(const stroid::StroidMesh &mesh, const std::string &filename) {
|
||||
SaveMesh(*mesh.mesh, filename);
|
||||
}
|
||||
|
||||
void SaveVTU(mfem::Mesh &mesh, const std::string &exportName) {
|
||||
mfem::ParaViewDataCollection pd(exportName, &mesh);
|
||||
pd.SetDataFormat(mfem::VTKFormat::BINARY);
|
||||
@@ -22,6 +442,10 @@ namespace stroid::IO {
|
||||
pd.Save();
|
||||
}
|
||||
|
||||
void SaveVTU(const stroid::StroidMesh &mesh, const std::string &exportName) {
|
||||
SaveVTU(*mesh.mesh, exportName);
|
||||
}
|
||||
|
||||
void ViewMesh(mfem::Mesh &mesh, const std::string& title, const VISUALIZATION_MODE mode, const std::string &vishost, int visport) {
|
||||
mfem::socketstream sol_sock(vishost.c_str(), visport);
|
||||
if (!sol_sock.is_open()) {
|
||||
@@ -61,7 +485,12 @@ namespace stroid::IO {
|
||||
sol_sock << "keys iMj\n";
|
||||
sol_sock << std::flush;
|
||||
}
|
||||
void VisualizeFaceValence(mfem::Mesh& mesh) {
|
||||
|
||||
void ViewMesh(const stroid::StroidMesh &mesh, const std::string &title, VISUALIZATION_MODE mode, const std::string &vishost, int visport) {
|
||||
ViewMesh(*mesh.mesh, title, mode, vishost, visport);
|
||||
}
|
||||
|
||||
void VisualizeFaceValence(mfem::Mesh& mesh, const std::string &vishost, int visport) {
|
||||
mfem::L2_FECollection fec(0, 3);
|
||||
mfem::FiniteElementSpace fes(&mesh, &fec);
|
||||
mfem::GridFunction valence_gf(&fes);
|
||||
@@ -78,13 +507,81 @@ namespace stroid::IO {
|
||||
}
|
||||
|
||||
// View in GLVis
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
mfem::socketstream sol_sock(vishost, visport);
|
||||
mfem::socketstream sol_sock(vishost.c_str(), visport);
|
||||
if (sol_sock.is_open()) {
|
||||
sol_sock << "solution\n" << mesh << valence_gf;
|
||||
sol_sock << "window_title 'Boundary Valence: 1=Surface, 2=Internal'\n";
|
||||
sol_sock << "keys am\n" << std::flush;
|
||||
}
|
||||
}
|
||||
|
||||
void VisualizeFaceValence(const stroid::StroidMesh &mesh, const std::string &vishost, int visport) {
|
||||
VisualizeFaceValence(*mesh.mesh, vishost, visport);
|
||||
}
|
||||
|
||||
std::expected<StroidMesh, std::string> ParseStroidMesh(std::istream& is) {
|
||||
auto pm = parse_metadata(is);
|
||||
if (!pm) return std::unexpected(pm.error());
|
||||
|
||||
if (pm->mesh.type != MFEM_MESH_TYPE::SERIAL) {
|
||||
return std::unexpected(
|
||||
"parsed a PARALLEL StroidMesh, but ParseStroidMesh(std::istream&) can only "
|
||||
"reconstruct serial meshes; use the MPI-aware overload "
|
||||
"ParseStroidMesh(std::istream&, MPI_Comm) (requires MFEM_USE_MPI)");
|
||||
}
|
||||
|
||||
auto m = load_serial_mesh(pm->pmesh_raw);
|
||||
if (!m) return std::unexpected("PMESH -> " + m.error());
|
||||
auto rm = load_serial_mesh(pm->rmesh_raw);
|
||||
if (!rm) return std::unexpected("RMESH -> " + rm.error());
|
||||
|
||||
pm->mesh.mesh = std::move(*m);
|
||||
pm->mesh.reference_mesh = std::move(*rm);
|
||||
return std::move(pm->mesh);
|
||||
}
|
||||
|
||||
std::expected<StroidMesh, std::string> LoadStroidMesh(const std::string& filename) {
|
||||
std::ifstream ifs(filename);
|
||||
if (!ifs.is_open())
|
||||
return std::unexpected(std::format("could not open file '{}'", filename));
|
||||
return ParseStroidMesh(ifs);
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
std::expected<StroidMesh, std::string> ParseStroidMesh(std::istream& is, MPI_Comm comm) {
|
||||
auto pm = parse_metadata(is);
|
||||
if (!pm) return std::unexpected(pm.error());
|
||||
|
||||
auto build = [&](const std::string& raw)
|
||||
-> std::expected<std::unique_ptr<mfem::Mesh>, std::string> {
|
||||
if (trim(raw).empty()) return std::unexpected("empty mesh block");
|
||||
std::istringstream iss(raw);
|
||||
try {
|
||||
if (pm->mesh.type == MFEM_MESH_TYPE::PARALLEL)
|
||||
return std::unique_ptr<mfem::Mesh>(new mfem::ParMesh(comm, iss));
|
||||
return std::make_unique<mfem::Mesh>(iss);
|
||||
} catch (const std::exception& e) {
|
||||
return std::unexpected(std::string("MFEM failed to parse mesh: ") + e.what());
|
||||
}
|
||||
};
|
||||
|
||||
auto m = build(pm->pmesh_raw);
|
||||
if (!m) return std::unexpected("PMESH -> " + m.error());
|
||||
auto rm = build(pm->rmesh_raw);
|
||||
if (!rm) return std::unexpected("RMESH -> " + rm.error());
|
||||
|
||||
pm->mesh.mesh = std::move(*m);
|
||||
pm->mesh.reference_mesh = std::move(*rm);
|
||||
return std::move(pm->mesh);
|
||||
}
|
||||
|
||||
std::expected<StroidMesh, std::string> LoadStroidMesh(const std::string& filename, MPI_Comm comm) {
|
||||
std::ifstream ifs(filename);
|
||||
if (!ifs.is_open())
|
||||
return std::unexpected(std::format("could not open file '{}'", filename));
|
||||
return ParseStroidMesh(ifs, comm);
|
||||
}
|
||||
#endif // MFEM_USE_MPI
|
||||
|
||||
|
||||
}
|
||||
39
src/lib/refinement/uniform.cpp
Normal file
39
src/lib/refinement/uniform.cpp
Normal file
@@ -0,0 +1,39 @@
|
||||
#include "mfem.hpp"
|
||||
|
||||
#include "stroid/refinement/uniform.h"
|
||||
#include "stroid/utils/types.h"
|
||||
#include "stroid/utils/mesh_utils.h"
|
||||
#include "stroid/exceptions/exceptions.h"
|
||||
#include "stroid/topology/topology.h"
|
||||
#include "stroid/topology/optimize.h"
|
||||
|
||||
namespace stroid::refinement {
|
||||
void UniformRefinement(StroidMesh &mesh, const size_t levels) {
|
||||
if (!mesh.reference_mesh) {
|
||||
throw exceptions::StroidMissingReferenceMesh("UniformRefinement requires a reference mesh to be present in the StroidMesh object. This should be present by construction and the fact that is is missing represents a bug. Please report this to the stroid developers on GitHub or by email at emily.boudreaux@dartmouth.edu");
|
||||
}
|
||||
|
||||
if (levels == 0) {
|
||||
return;
|
||||
}
|
||||
|
||||
for (size_t i = 0; i < levels; i++) {
|
||||
mesh.reference_mesh->UniformRefinement();
|
||||
}
|
||||
|
||||
mesh.refinement_levels += levels;
|
||||
|
||||
fourdst::config::Config<config::MeshConfig> cfg;
|
||||
auto Mutator = [&mesh](config::MeshConfig& orig) {
|
||||
orig = mesh.config;
|
||||
};
|
||||
|
||||
cfg.mutate(Mutator);
|
||||
|
||||
mesh.mesh = utils::BuildProjected(*mesh.reference_mesh, cfg);
|
||||
|
||||
|
||||
|
||||
topology::OptimizeMesh(*mesh.mesh, cfg);
|
||||
}
|
||||
}
|
||||
@@ -1,6 +1,64 @@
|
||||
#include "stroid/topology/mapping.h"
|
||||
#include "stroid/exceptions/exceptions.h"
|
||||
#include <cmath>
|
||||
#include <algorithm>
|
||||
#include <array>
|
||||
#include <utility>
|
||||
#include <format>
|
||||
#include <string>
|
||||
|
||||
namespace {
|
||||
template<int n, int k>
|
||||
consteval int nCr() {
|
||||
if constexpr (k > n) {
|
||||
return 0;
|
||||
} else {
|
||||
if constexpr (constexpr int kk = (k * 2 > n) ? (n - k) : k; kk == 0) {
|
||||
return 1;
|
||||
} else {
|
||||
int result = n;
|
||||
|
||||
for (int i = 2; i <= kk; ++i) {
|
||||
result *= (n - i + 1);
|
||||
result /= i;
|
||||
}
|
||||
|
||||
return result;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <int n>
|
||||
double GeneralizedSmoothstep(const double x) {
|
||||
if (x <= 0.0) return 0.0;
|
||||
if (x >= 1.0) return 1.0;
|
||||
|
||||
double sum = 0.0;
|
||||
|
||||
auto compute_term = [&]<std::size_t k>(std::integral_constant<std::size_t, k>) {
|
||||
return nCr<n + k, k>() * std::pow(1.0 - x, k);
|
||||
};
|
||||
|
||||
auto unroller = [&]<std::size_t... ks>(std::index_sequence<ks...>) {
|
||||
return (compute_term(std::integral_constant<std::size_t, ks>{}) + ...);
|
||||
};
|
||||
|
||||
sum = unroller(std::make_index_sequence<n + 1>{});
|
||||
return sum * std::pow(x, n + 1);
|
||||
}
|
||||
|
||||
template <std::size_t... Is>
|
||||
constexpr auto make_smoothstep_dispatch_table(std::index_sequence<Is...>) {
|
||||
return std::array<double(*)(double), sizeof...(Is)>{
|
||||
&GeneralizedSmoothstep<Is + 1>...
|
||||
};
|
||||
}
|
||||
|
||||
constexpr int MAX_SMOOTHSTEP_ORDER = 10;
|
||||
constexpr auto smoothstep_dispatch = make_smoothstep_dispatch_table(
|
||||
std::make_index_sequence<MAX_SMOOTHSTEP_ORDER>{}
|
||||
);
|
||||
}
|
||||
|
||||
namespace stroid::topology {
|
||||
void ApplyEquiangular(mfem::Vector &pos) {
|
||||
@@ -33,51 +91,43 @@ namespace stroid::topology {
|
||||
}
|
||||
|
||||
void TransformPoint(mfem::Vector &pos, const fourdst::config::Config<config::MeshConfig> &config, int attribute_id) {
|
||||
double l_inf = 0.0;
|
||||
for (int i = 0; i < pos.Size(); ++i) {
|
||||
l_inf = std::max(l_inf, std::abs(pos(i)));
|
||||
}
|
||||
double X = pos(0);
|
||||
double Y = pos(1);
|
||||
double Z = pos(2);
|
||||
|
||||
if (l_inf < config->r_instability) return;
|
||||
double maxAbs = std::max({std::abs(X), std::abs(Y), std::abs(Z)});
|
||||
if (maxAbs < 1e-14) return;
|
||||
|
||||
// Gnomonic projection
|
||||
const double r_log = pos.Norml2();
|
||||
mfem::Vector unit_dir = pos;
|
||||
unit_dir /= r_log;
|
||||
double cx = X / maxAbs;
|
||||
double cy = Y / maxAbs;
|
||||
double cz = Z / maxAbs;
|
||||
|
||||
ApplyEquiangular(unit_dir);
|
||||
unit_dir /= unit_dir.Norml2(); // Re-normalize
|
||||
double sx = cx * std::sqrt(1.0 - cy*cy/2.0 - cz*cz/2.0 + cy*cy*cz*cz/3.0);
|
||||
double sy = cy * std::sqrt(1.0 - cx*cx/2.0 - cz*cz/2.0 + cx*cx*cz*cz/3.0);
|
||||
double sz = cz * std::sqrt(1.0 - cx*cx/2.0 - cy*cy/2.0 + cx*cx*cy*cy/3.0);
|
||||
|
||||
if (l_inf <= config->r_core) {
|
||||
const double t = l_inf / config->r_core.value();
|
||||
double alpha = std::pow(t, config->core_steepness.value());
|
||||
mfem::Vector unit_dir(3);
|
||||
unit_dir(0) = sx;
|
||||
unit_dir(1) = sy;
|
||||
unit_dir(2) = sz;
|
||||
|
||||
// Smoothstep function to apply C1 continuity
|
||||
alpha = alpha * alpha * (3.0 - 2.0 * alpha);
|
||||
if (maxAbs <= config->r_core.value()) {
|
||||
double nx = X / config->r_core.value();
|
||||
double ny = Y / config->r_core.value();
|
||||
double nz = Z / config->r_core.value();
|
||||
|
||||
mfem::Vector pos_cartesian = pos;
|
||||
mfem::Vector pos_spherical = unit_dir;
|
||||
pos(0) = nx * std::sqrt(1.0 - ny*ny/2.0 - nz*nz/2.0 + ny*ny*nz*nz/3.0);
|
||||
pos(1) = ny * std::sqrt(1.0 - nx*nx/2.0 - nz*nz/2.0 + nx*nx*nz*nz/3.0);
|
||||
pos(2) = nz * std::sqrt(1.0 - nx*nx/2.0 - ny*ny/2.0 + nx*nx*ny*ny/3.0);
|
||||
|
||||
pos_spherical *= l_inf;
|
||||
bool run_smoothstep = false;
|
||||
|
||||
|
||||
if (config->optimization_methods.has_value() && config->optimization_methods.value().smoothstep.has_value() && config->optimization_methods.value().smoothstep.value()) {
|
||||
run_smoothstep = true;
|
||||
}
|
||||
|
||||
|
||||
if (run_smoothstep) {
|
||||
for (int d = 0; d < pos.Size(); ++d) {
|
||||
pos(d) = (1.0 - alpha) * pos_cartesian(d) + alpha * pos_spherical(d);
|
||||
}
|
||||
}
|
||||
pos *= config->r_core.value();
|
||||
|
||||
ApplySpheroidal(pos, config);
|
||||
return;
|
||||
}
|
||||
if (l_inf <= config->r_star) {
|
||||
const double xi = (l_inf - config->r_core.value()) / (config->r_star.value() - config->r_core.value());
|
||||
|
||||
if (maxAbs <= config->r_star.value()) {
|
||||
const double xi = (maxAbs - config->r_core.value()) / (config->r_star.value() - config->r_core.value());
|
||||
const double r_phys = config->r_core.value() + xi * (config->r_star.value() - config->r_core.value());
|
||||
|
||||
pos = unit_dir;
|
||||
@@ -86,8 +136,74 @@ namespace stroid::topology {
|
||||
ApplySpheroidal(pos, config);
|
||||
} else {
|
||||
pos = unit_dir;
|
||||
pos *= l_inf;
|
||||
pos *= maxAbs;
|
||||
|
||||
ApplySpheroidal(pos, config);
|
||||
}
|
||||
}}
|
||||
}
|
||||
|
||||
// void TransformPoint(mfem::Vector &pos, const fourdst::config::Config<config::MeshConfig> &config, int attribute_id) {
|
||||
// double l_inf = 0.0;
|
||||
// for (int i = 0; i < pos.Size(); ++i) {
|
||||
// l_inf = std::max(l_inf, std::abs(pos(i)));
|
||||
// }
|
||||
//
|
||||
// if (l_inf < config->r_instability) return;
|
||||
//
|
||||
// // Gnomonic projection
|
||||
// const double r_log = pos.Norml2();
|
||||
// mfem::Vector unit_dir = pos;
|
||||
// unit_dir /= r_log;
|
||||
//
|
||||
// ApplyEquiangular(unit_dir);
|
||||
// unit_dir /= unit_dir.Norml2(); // Re-normalize
|
||||
//
|
||||
// if (l_inf <= config->r_core) {
|
||||
// const double t = l_inf / config->r_core.value();
|
||||
// double alpha = std::pow(t, config->core_steepness.value());
|
||||
// const size_t order = config->continuity_order.value_or(2);
|
||||
// if (order < 1 || order > MAX_SMOOTHSTEP_ORDER) {
|
||||
// const std::string err_msg = std::format("Invalid continuity order: {}. Continuity order must be between (inclusive) 1 and {}. To push to higher orders you must update MAX_SMOOTHSTEP_ORDER in src/lib/topology/mapping.cpp and recompile.", order, MAX_SMOOTHSTEP_ORDER);
|
||||
// throw exceptions::StroidContinuityError(err_msg);
|
||||
// }
|
||||
//
|
||||
// alpha = smoothstep_dispatch[order - 1](alpha); // We use this funky method as it keeps smoothstep calculation largely offloaded to compile time rather than run-time
|
||||
//
|
||||
// mfem::Vector pos_cartesian = pos;
|
||||
// mfem::Vector pos_spherical = unit_dir;
|
||||
//
|
||||
// pos_spherical *= l_inf;
|
||||
// bool run_smoothstep = false;
|
||||
//
|
||||
//
|
||||
// if (config->optimization_methods.has_value() && config->optimization_methods.value().smoothstep.has_value() && config->optimization_methods.value().smoothstep.value()) {
|
||||
// run_smoothstep = true;
|
||||
// }
|
||||
//
|
||||
//
|
||||
// if (run_smoothstep) {
|
||||
// for (int d = 0; d < pos.Size(); ++d) {
|
||||
// pos(d) = (1.0 - alpha) * pos_cartesian(d) + alpha * pos_spherical(d);
|
||||
// }
|
||||
// }
|
||||
//
|
||||
// ApplySpheroidal(pos, config);
|
||||
// return;
|
||||
// }
|
||||
//
|
||||
// if (l_inf <= config->r_star) {
|
||||
// const double xi = (l_inf - config->r_core.value()) / (config->r_star.value() - config->r_core.value());
|
||||
// const double r_phys = config->r_core.value() + xi * (config->r_star.value() - config->r_core.value());
|
||||
//
|
||||
// pos = unit_dir;
|
||||
// pos *= r_phys;
|
||||
//
|
||||
// ApplySpheroidal(pos, config);
|
||||
// } else {
|
||||
// pos = unit_dir;
|
||||
// pos *= l_inf;
|
||||
//
|
||||
// ApplySpheroidal(pos, config);
|
||||
// }
|
||||
// }
|
||||
}
|
||||
|
||||
@@ -172,7 +172,8 @@ class TMOPProgressBar : public mfem::IterativeSolverMonitor {
|
||||
fes->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
|
||||
mfem::TMOP_QualityMetric* metric = new mfem::TMOP_Metric_302();
|
||||
mfem::TargetConstructor* target_c = new mfem::TargetConstructor(mfem::TargetConstructor::IDEAL_SHAPE_UNIT_SIZE);
|
||||
mfem::TargetConstructor* target_c = new mfem::TargetConstructor(mfem::TargetConstructor::IDEAL_SHAPE_GIVEN_SIZE);
|
||||
target_c->SetNodes(*mesh.GetNodes());
|
||||
mfem::TMOP_Integrator* tmop_integrator = new mfem::TMOP_Integrator(metric, target_c);
|
||||
|
||||
mfem::NonlinearForm a(fes);
|
||||
@@ -185,10 +186,10 @@ class TMOPProgressBar : public mfem::IterativeSolverMonitor {
|
||||
b = 0.0;
|
||||
|
||||
mfem::MINRESSolver minres;
|
||||
minres.SetMaxIter(500);
|
||||
minres.SetMaxIter(750);
|
||||
minres.SetRelTol(1e-5);
|
||||
minres.SetAbsTol(0.0);
|
||||
minres.SetPrintLevel(0);
|
||||
minres.SetPrintLevel(-1);
|
||||
|
||||
mfem::DSmoother jacobi(1, 1.0, 1);
|
||||
jacobi.SetPositiveDiagonal(true);
|
||||
@@ -206,7 +207,7 @@ class TMOPProgressBar : public mfem::IterativeSolverMonitor {
|
||||
}
|
||||
}
|
||||
|
||||
constexpr double newton_rtol = 1e-4;
|
||||
constexpr double newton_rtol = 1e-8;
|
||||
mfem::TMOPNewtonSolver newton(ir, 0);
|
||||
newton.SetPreconditioner(minres);
|
||||
newton.SetOperator(a);
|
||||
|
||||
485
src/lib/utils/mesh_stats.cpp
Normal file
485
src/lib/utils/mesh_stats.cpp
Normal file
@@ -0,0 +1,485 @@
|
||||
#include "stroid/utils/mesh_stats.h"
|
||||
|
||||
#include <cmath>
|
||||
#include <limits>
|
||||
#include <format>
|
||||
#include <string>
|
||||
#include <algorithm>
|
||||
|
||||
namespace stroid::stats {
|
||||
namespace {
|
||||
double SpheroidRadius(const double ux, const double uy, const double uz,
|
||||
const double r_star, const double flattening) {
|
||||
const double a = r_star;
|
||||
const double c = r_star * (1.0 - flattening);
|
||||
const double inv = (ux*ux + uy*uy) / (a*a) + (uz*uz) / (c*c);
|
||||
return (inv > 0.0) ? 1.0 / std::sqrt(inv) : 0.0;
|
||||
}
|
||||
}
|
||||
|
||||
MeshStats ComputeMeshStats(const StroidMesh& sm, MeshStatFeatures features, int sample_order) {
|
||||
MeshStats out;
|
||||
out.computed = features;
|
||||
|
||||
auto mesh_or = sm.as_mesh();
|
||||
if (!mesh_or) {
|
||||
out.errors.push_back(mesh_or.error());
|
||||
return out;
|
||||
}
|
||||
mfem::Mesh* mesh = *mesh_or;
|
||||
if (!mesh) {
|
||||
out.errors.push_back("StroidMesh has no stored computational mesh to compute stats against");
|
||||
return out; // BUGFIX: was falling through to a null deref
|
||||
}
|
||||
|
||||
const auto& cfg = sm.config;
|
||||
const double r_star = cfg.r_star.value_or(1.0);
|
||||
const double flattening = cfg.flattening.value_or(0.0);
|
||||
const int surf_bdr = static_cast<int>(cfg.surface_bdr_id.value_or(-99));
|
||||
const int inf_bdr = static_cast<int>(cfg.inf_bdr_id.value_or(-99));
|
||||
const int core_id = static_cast<int>(cfg.core_id.value_or(-99));
|
||||
const int env_id = static_cast<int>(cfg.envelope_id.value_or(-99));
|
||||
const int vac_id = static_cast<int>(cfg.vacuum_id.value_or(-99));
|
||||
|
||||
int geom_order = -99;
|
||||
if (mesh->GetNodes()) {
|
||||
geom_order = mesh->GetNodes()->FESpace()->GetMaxElementOrder();
|
||||
}
|
||||
const int sorder = (sample_order > 0) ? sample_order : (2 * geom_order + 4);
|
||||
|
||||
if (has_feature(features, MeshStatFeatures::CONFIG_META)) {
|
||||
ConfigMeta meta;
|
||||
meta.r_core = cfg.r_core.value_or(-99.99);
|
||||
meta.r_star = cfg.r_star.value_or(-99.99);
|
||||
meta.r_infinity = cfg.r_infinity.value_or(-99.99);
|
||||
meta.flattening = flattening;
|
||||
meta.geom_order = geom_order;
|
||||
meta.refinement_levels = sm.refinement_levels;
|
||||
meta.has_external_domain = cfg.include_external_domain.value_or(false);
|
||||
out.config_meta = meta;
|
||||
}
|
||||
|
||||
if (has_feature(features, MeshStatFeatures::CONFORMITY)) {
|
||||
ConformityStats conformity;
|
||||
conformity.conforming = mesh->Conforming();
|
||||
conformity.n_nonconforming_faces = conformity.conforming ? 0 : -99; // TODO: count
|
||||
out.conformity = conformity;
|
||||
}
|
||||
|
||||
// ============================ SURFACE PASS ============================
|
||||
const bool needs_surface =
|
||||
has_feature(features, MeshStatFeatures::RADIUS) ||
|
||||
has_feature(features, MeshStatFeatures::AXES) ||
|
||||
has_feature(features, MeshStatFeatures::ELLIPTICITY) ||
|
||||
has_feature(features, MeshStatFeatures::BOWING) ||
|
||||
has_feature(features, MeshStatFeatures::VOLUME_AREA);
|
||||
|
||||
if (needs_surface) {
|
||||
double r_min = std::numeric_limits<double>::max();
|
||||
double r_max = std::numeric_limits<double>::lowest();
|
||||
double r_sum = 0.0, r_sum_sq = 0.0;
|
||||
double a_eq = 0.0, c_pol = 0.0;
|
||||
double bow_in = 0.0, bow_out = 0.0, bow_sum_sq = 0.0, bow_worst_r = 0.0;
|
||||
double bow_worst_mag = 0.0;
|
||||
double area = 0.0;
|
||||
long n_samples = 0;
|
||||
mfem::Vector phys;
|
||||
|
||||
for (int b = 0; b < mesh->GetNBE(); ++b) {
|
||||
if (mesh->GetBdrAttribute(b) != surf_bdr) continue;
|
||||
mfem::ElementTransformation* T = mesh->GetBdrElementTransformation(b);
|
||||
const mfem::IntegrationRule& ir = mfem::IntRules.Get(T->GetGeometryType(), sorder);
|
||||
|
||||
for (int q = 0; q < ir.GetNPoints(); ++q) {
|
||||
const mfem::IntegrationPoint& ip = ir.IntPoint(q);
|
||||
T->SetIntPoint(&ip);
|
||||
T->Transform(ip, phys);
|
||||
|
||||
const double x = phys(0), y = phys(1), z = phys(2);
|
||||
const double r = phys.Norml2();
|
||||
const double rho = std::sqrt(x*x + y*y);
|
||||
const double w = T->Weight() * ip.weight;
|
||||
|
||||
r_min = std::min(r_min, r);
|
||||
r_max = std::max(r_max, r);
|
||||
r_sum += r; r_sum_sq += r*r;
|
||||
a_eq = std::max(a_eq, rho);
|
||||
c_pol = std::max(c_pol, std::abs(z));
|
||||
area += w;
|
||||
++n_samples;
|
||||
|
||||
if (has_feature(features, MeshStatFeatures::BOWING) && r > 1e-14) {
|
||||
const double rt = SpheroidRadius(x/r, y/r, z/r, r_star, flattening);
|
||||
const double dev = r - rt;
|
||||
bow_in = std::min(bow_in, dev);
|
||||
bow_out = std::max(bow_out, dev);
|
||||
bow_sum_sq += dev * dev;
|
||||
if (std::abs(dev) > bow_worst_mag) {
|
||||
bow_worst_mag = std::abs(dev);
|
||||
bow_worst_r = r;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
if (n_samples == 0) {
|
||||
out.warnings.push_back("No samples were collected from the surface boundary. Check that the "
|
||||
"surface boundary ID is correct. Lacking a surface pass prevents the "
|
||||
"following from reporting accurate results: "
|
||||
"[RADIUS, AXES, ELLIPTICITY, BOWING, VOLUME_AREA]");
|
||||
} else {
|
||||
if (has_feature(features, MeshStatFeatures::RADIUS)) {
|
||||
const double mean = r_sum / n_samples;
|
||||
const double var = std::max(0.0, r_sum_sq / n_samples - mean * mean);
|
||||
out.radius = RadiusStats{
|
||||
.min = r_min, .max = r_max, .mean = mean,
|
||||
.stddev = std::sqrt(var), .n_samples = n_samples
|
||||
};
|
||||
}
|
||||
if (has_feature(features, MeshStatFeatures::AXES)) {
|
||||
out.axes = AxisStats{ .semi_major = a_eq, .semi_minor = c_pol };
|
||||
}
|
||||
if (has_feature(features, MeshStatFeatures::ELLIPTICITY)) {
|
||||
out.ellipticity = EllipticityStats{
|
||||
.flattening = (a_eq > 0) ? (a_eq - c_pol) / a_eq : 0.0,
|
||||
.polar_equatorial = (a_eq > 0) ? c_pol / a_eq : 1.0,
|
||||
.radius_uniformity = (r_max > 0) ? r_min / r_max : 1.0,
|
||||
};
|
||||
}
|
||||
if (has_feature(features, MeshStatFeatures::BOWING)) {
|
||||
out.bowing = BowingStats{
|
||||
.max_inward = bow_in, .max_outward = bow_out,
|
||||
.rms = std::sqrt(bow_sum_sq / n_samples), .worst_at_radius = bow_worst_r,
|
||||
};
|
||||
}
|
||||
if (has_feature(features, MeshStatFeatures::VOLUME_AREA)) {
|
||||
const double a = r_star, c = r_star * (1.0 - flattening);
|
||||
out.volume = VolumeAreaStats{
|
||||
.surface_area = area,
|
||||
.analytic_area = (flattening == 0) ? 4.0 * M_PI * a * a : -99.99
|
||||
};
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// ============================ VOLUME PASS ============================
|
||||
const bool needs_volume =
|
||||
has_feature(features, MeshStatFeatures::VOLUME_AREA) ||
|
||||
has_feature(features, MeshStatFeatures::JACOBIAN) ||
|
||||
has_feature(features, MeshStatFeatures::ELEMENT_COUNT) ||
|
||||
has_feature(features, MeshStatFeatures::MESH_SIZE) ||
|
||||
has_feature(features, MeshStatFeatures::CENTROID) ||
|
||||
has_feature(features, MeshStatFeatures::BOUNDING_BOX); // BUGFIX: was a dangling ';'
|
||||
|
||||
if (needs_volume) {
|
||||
const bool need_bbox = has_feature(features, MeshStatFeatures::BOUNDING_BOX);
|
||||
const bool need_jac = has_feature(features, MeshStatFeatures::JACOBIAN);
|
||||
|
||||
// Bounding-box accumulators (seeded inverted so empty regions stay invalid).
|
||||
double cxmin=+std::numeric_limits<double>::max(), cxmax=-std::numeric_limits<double>::max();
|
||||
double cymin=cxmin, cymax=cxmax, czmin=cxmin, czmax=cxmax; // core
|
||||
double sxmin=cxmin, sxmax=cxmax, symin=cxmin, symax=cxmax, szmin=cxmin, szmax=cxmax; // stellar
|
||||
double vxmin=cxmin, vxmax=cxmax, vymin=cxmin, vymax=cxmax, vzmin=cxmin, vzmax=cxmax; // vacuum
|
||||
long n_core_box=0, n_stel_box=0, n_vac_box=0;
|
||||
mfem::Vector bphys;
|
||||
|
||||
// Per-region Jacobian accumulators.
|
||||
struct JacAccum {
|
||||
double detJ_min = std::numeric_limits<double>::max();
|
||||
double detJ_max = -std::numeric_limits<double>::max();
|
||||
double min_ratio = 1.0;
|
||||
long n_flipped = 0;
|
||||
long n_elem = 0;
|
||||
double worst_ratio_r = -1.0;
|
||||
double min_detJ_r = -1.0;
|
||||
};
|
||||
JacAccum all_acc, stel_acc, vac_acc;
|
||||
|
||||
auto jac_update = [](JacAccum& a, double dmin, double dmax, bool flip, double r) {
|
||||
++a.n_elem;
|
||||
if (dmin < a.detJ_min) { a.detJ_min = dmin; a.min_detJ_r = r; }
|
||||
if (dmax > a.detJ_max) a.detJ_max = dmax;
|
||||
if (dmax > 1e-30) {
|
||||
const double ratio = dmin / dmax;
|
||||
if (ratio < a.min_ratio) { a.min_ratio = ratio; a.worst_ratio_r = r; }
|
||||
}
|
||||
if (flip) ++a.n_flipped;
|
||||
};
|
||||
|
||||
double vol = 0.0, cx = 0.0, cy = 0.0, cz = 0.0;
|
||||
double h_min = std::numeric_limits<double>::max();
|
||||
double h_max = -std::numeric_limits<double>::max();
|
||||
double h_sum = 0.0, h_sum_sq = 0.0;
|
||||
long n_core = 0, n_env = 0, n_vac = 0, n_other = 0;
|
||||
mfem::Vector phys;
|
||||
|
||||
for (int e = 0; e < mesh->GetNE(); ++e) {
|
||||
const int attr = mesh->GetAttribute(e);
|
||||
if (attr == core_id) ++n_core;
|
||||
else if (attr == env_id) ++n_env;
|
||||
else if (attr == vac_id) ++n_vac;
|
||||
else ++n_other;
|
||||
|
||||
const bool stellar = (attr == core_id || attr == env_id);
|
||||
|
||||
if (has_feature(features, MeshStatFeatures::MESH_SIZE) && stellar) {
|
||||
const double h = mesh->GetElementSize(e);
|
||||
h_min = std::min(h_min, h);
|
||||
h_max = std::max(h_max, h);
|
||||
h_sum += h; h_sum_sq += h*h;
|
||||
}
|
||||
|
||||
mfem::ElementTransformation* T = mesh->GetElementTransformation(e);
|
||||
const mfem::IntegrationRule& ir = mfem::IntRules.Get(T->GetGeometryType(), sorder);
|
||||
|
||||
double e_detmin = std::numeric_limits<double>::max();
|
||||
double e_detmax = -std::numeric_limits<double>::max();
|
||||
bool e_flip = false;
|
||||
|
||||
for (int q = 0; q < ir.GetNPoints(); ++q) {
|
||||
const mfem::IntegrationPoint& ip = ir.IntPoint(q);
|
||||
T->SetIntPoint(&ip);
|
||||
|
||||
if (need_bbox) {
|
||||
T->Transform(ip, bphys);
|
||||
const double X = bphys(0), Y = bphys(1), Z = bphys(2);
|
||||
if (attr == core_id) {
|
||||
cxmin=std::min(cxmin,X); cxmax=std::max(cxmax,X);
|
||||
cymin=std::min(cymin,Y); cymax=std::max(cymax,Y);
|
||||
czmin=std::min(czmin,Z); czmax=std::max(czmax,Z);
|
||||
++n_core_box;
|
||||
}
|
||||
if (stellar) { // stellar = core U envelope
|
||||
sxmin=std::min(sxmin,X); sxmax=std::max(sxmax,X);
|
||||
symin=std::min(symin,Y); symax=std::max(symax,Y);
|
||||
szmin=std::min(szmin,Z); szmax=std::max(szmax,Z);
|
||||
++n_stel_box;
|
||||
}
|
||||
if (attr == vac_id) {
|
||||
vxmin=std::min(vxmin,X); vxmax=std::max(vxmax,X);
|
||||
vymin=std::min(vymin,Y); vymax=std::max(vymax,Y);
|
||||
vzmin=std::min(vzmin,Z); vzmax=std::max(vzmax,Z);
|
||||
++n_vac_box;
|
||||
}
|
||||
}
|
||||
|
||||
const double dJ = T->Jacobian().Det();
|
||||
e_detmin = std::min(e_detmin, dJ);
|
||||
e_detmax = std::max(e_detmax, dJ);
|
||||
if (dJ < 0.0) e_flip = true;
|
||||
|
||||
if (stellar && (has_feature(features, MeshStatFeatures::VOLUME_AREA) ||
|
||||
has_feature(features, MeshStatFeatures::CENTROID))) {
|
||||
const double w = std::abs(dJ) * ip.weight;
|
||||
vol += w;
|
||||
if (has_feature(features, MeshStatFeatures::CENTROID)) {
|
||||
T->Transform(ip, phys);
|
||||
cx += w*phys(0); cy += w*phys(1); cz += w*phys(2);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
if (need_jac) {
|
||||
// Representative element radius (center) for locating the worst element.
|
||||
const mfem::IntegrationPoint& cip = mfem::Geometries.GetCenter(T->GetGeometryType());
|
||||
T->SetIntPoint(&cip);
|
||||
mfem::Vector cpt;
|
||||
T->Transform(cip, cpt);
|
||||
const double er = cpt.Norml2();
|
||||
|
||||
jac_update(all_acc, e_detmin, e_detmax, e_flip, er);
|
||||
if (stellar) jac_update(stel_acc, e_detmin, e_detmax, e_flip, er);
|
||||
else if (attr == vac_id) jac_update(vac_acc, e_detmin, e_detmax, e_flip, er);
|
||||
}
|
||||
}
|
||||
|
||||
if (has_feature(features, MeshStatFeatures::ELEMENT_COUNT)) {
|
||||
out.element_counts = ElementCounts{
|
||||
.total = n_core + n_env + n_vac + n_other,
|
||||
.core = n_core, .envelope = n_env, .vacuum = n_vac, .other = n_other,
|
||||
.n_vertices = mesh->GetNV(),
|
||||
};
|
||||
}
|
||||
|
||||
if (need_jac) {
|
||||
auto finalize = [](const JacAccum& a) {
|
||||
JacobianStats j;
|
||||
j.n_elements = a.n_elem;
|
||||
j.detJ_min = (a.n_elem > 0) ? a.detJ_min : 0.0;
|
||||
j.detJ_max = (a.n_elem > 0) ? a.detJ_max : 0.0;
|
||||
j.min_detJ_ratio = a.min_ratio;
|
||||
j.n_flipped = a.n_flipped;
|
||||
j.worst_ratio_at_radius = a.worst_ratio_r;
|
||||
j.detJ_min_at_radius = a.min_detJ_r;
|
||||
return j;
|
||||
};
|
||||
out.jacobian = finalize(all_acc);
|
||||
if (stel_acc.n_elem > 0) out.jacobian_stellar = finalize(stel_acc);
|
||||
if (vac_acc.n_elem > 0) out.jacobian_vacuum = finalize(vac_acc);
|
||||
}
|
||||
|
||||
if (has_feature(features, MeshStatFeatures::MESH_SIZE)) {
|
||||
const long ns = n_core + n_env;
|
||||
const double mean = (ns > 0) ? h_sum / ns : 0.0;
|
||||
const double var = (ns > 0) ? std::max(0.0, h_sum_sq / ns - mean * mean) : 0.0;
|
||||
out.mesh_size = MeshSizeStats{
|
||||
.h_min = h_min, .h_max = h_max, .h_mean = mean, .h_stddev = std::sqrt(var),
|
||||
};
|
||||
}
|
||||
|
||||
if (has_feature(features, MeshStatFeatures::VOLUME_AREA)) {
|
||||
if (!out.volume) out.volume.emplace(); // BUGFIX: surface pass may not have created it
|
||||
out.volume->stellar_volume = vol;
|
||||
const double a = r_star, c = r_star * (1.0 - flattening);
|
||||
out.volume->analytic_volume = (4.0 / 3.0) * M_PI * a * a * c;
|
||||
}
|
||||
|
||||
if (has_feature(features, MeshStatFeatures::CENTROID)) {
|
||||
if (vol <= 0) {
|
||||
out.warnings.push_back("Stellar volume is zero or negative, cannot compute centroid.");
|
||||
} else {
|
||||
const double ccx = cx / vol, ccy = cy / vol, ccz = cz / vol; // BUGFIX: normalize
|
||||
out.centroid = CentroidStats{
|
||||
.x = ccx, .y = ccy, .z = ccz,
|
||||
.offset = std::sqrt(ccx*ccx + ccy*ccy + ccz*ccz)
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
if (need_bbox) {
|
||||
BoundingBoxStats bb;
|
||||
auto fill = [](BoundingBox& box, long n,
|
||||
double xmn,double xmx,double ymn,double ymx,double zmn,double zmx) {
|
||||
if (n > 0) {
|
||||
box.valid = true;
|
||||
box.xMin=xmn; box.xMax=xmx;
|
||||
box.yMin=ymn; box.yMax=ymx;
|
||||
box.zMin=zmn; box.zMax=zmx;
|
||||
}
|
||||
};
|
||||
fill(bb.core, n_core_box, cxmin,cxmax,cymin,cymax,czmin,czmax);
|
||||
fill(bb.star, n_stel_box, sxmin,sxmax,symin,symax,szmin,szmax);
|
||||
fill(bb.vacuum, n_vac_box, vxmin,vxmax,vymin,vymax,vzmin,vzmax);
|
||||
out.bounding_box = bb;
|
||||
}
|
||||
}
|
||||
|
||||
// ============================ OUTER BOUND PASS ============================
|
||||
if (has_feature(features, MeshStatFeatures::OUTER_BOUNDS)) {
|
||||
double r_min = std::numeric_limits<double>::max();
|
||||
double r_max = std::numeric_limits<double>::lowest();
|
||||
double r_sum = 0.0;
|
||||
long n_samples = 0;
|
||||
mfem::Vector phys;
|
||||
|
||||
for (int b = 0; b < mesh->GetNBE(); ++b) {
|
||||
if (mesh->GetBdrAttribute(b) != inf_bdr) continue;
|
||||
mfem::ElementTransformation* T = mesh->GetBdrElementTransformation(b);
|
||||
const mfem::IntegrationRule& ir = mfem::IntRules.Get(T->GetGeometryType(), sorder);
|
||||
for (int q = 0; q < ir.GetNPoints(); ++q) {
|
||||
T->SetIntPoint(&ir.IntPoint(q));
|
||||
T->Transform(ir.IntPoint(q), phys);
|
||||
const double r = phys.Norml2();
|
||||
r_min = std::min(r_min, r); r_max = std::max(r_max, r);
|
||||
r_sum += r; ++n_samples;
|
||||
}
|
||||
}
|
||||
|
||||
if (n_samples == 0) {
|
||||
out.warnings.push_back("No samples found on the outer boundary, cannot compute outer bounds.");
|
||||
} else {
|
||||
out.outer_bounds = OuterBoundsStats{
|
||||
.min = r_min, .max = r_max, .mean = r_sum / n_samples, .n_samples = n_samples
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
return out;
|
||||
}
|
||||
|
||||
std::string to_string(const MeshStats& s) {
|
||||
std::string o = "MeshStats:\n";
|
||||
auto line = [&](const std::string& l){ o += " =>" + l + "\n"; };
|
||||
|
||||
if (s.config_meta) {
|
||||
const auto& m = *s.config_meta;
|
||||
line(std::format(
|
||||
"config: r_core={:0.4f}, r_star={:0.4f}, r_inf={:0.4f}, flattening={:0.4f}, "
|
||||
"geometric order={}, refinement levels={}",
|
||||
m.r_core, m.r_star, m.r_infinity, m.flattening, m.geom_order, m.refinement_levels));
|
||||
}
|
||||
if (s.radius) {
|
||||
const auto& r = *s.radius;
|
||||
line(std::format("radius: min={:.6f} max={:.6f} mean={:.6f} std={:.3E} (n={})",
|
||||
r.min, r.max, r.mean, r.stddev, r.n_samples));
|
||||
}
|
||||
if (s.axes) {
|
||||
line(std::format("axes: semi_major(eq)={:.6f} semi_minor(pol)={:.6f}",
|
||||
s.axes->semi_major, s.axes->semi_minor));
|
||||
}
|
||||
if (s.ellipticity) {
|
||||
const auto& e = *s.ellipticity;
|
||||
line(std::format("ellipticity: flattening={:.5f} c/a={:.5f} r_min/r_max={:.5f}",
|
||||
e.flattening, e.polar_equatorial, e.radius_uniformity));
|
||||
}
|
||||
if (s.bowing) {
|
||||
const auto& b = *s.bowing;
|
||||
line(std::format("bowing: max_inward={:.3E} max_outward={:.3E} rms={:.3E}",
|
||||
b.max_inward, b.max_outward, b.rms));
|
||||
}
|
||||
if (s.conformity) {
|
||||
line(std::format("conforming: {}", s.conformity->conforming));
|
||||
}
|
||||
|
||||
auto jac_line = [&](const std::string& label, const JacobianStats& j) {
|
||||
line(std::format(
|
||||
"jacobian[{}]: detJ=[{:.3E},{:.3E}] min_ratio={:.3E} (@r={:.4f}) "
|
||||
"min_detJ@r={:.4f} flipped={} n={}",
|
||||
label, j.detJ_min, j.detJ_max, j.min_detJ_ratio, j.worst_ratio_at_radius,
|
||||
j.detJ_min_at_radius, j.n_flipped, j.n_elements));
|
||||
};
|
||||
if (s.jacobian) jac_line("all", *s.jacobian);
|
||||
if (s.jacobian_stellar) jac_line("stellar", *s.jacobian_stellar);
|
||||
if (s.jacobian_vacuum) jac_line("vacuum", *s.jacobian_vacuum);
|
||||
|
||||
if (s.volume) {
|
||||
const auto& v = *s.volume;
|
||||
line(std::format("volume={:.6f} (analytic {:.6f}) area={:.6f}",
|
||||
v.stellar_volume, v.analytic_volume, v.surface_area));
|
||||
}
|
||||
if (s.element_counts) {
|
||||
const auto& c = *s.element_counts;
|
||||
line(std::format("elements: total={} core={} env={} vac={} other={} NV={}",
|
||||
c.total, c.core, c.envelope, c.vacuum, c.other, c.n_vertices));
|
||||
}
|
||||
if (s.mesh_size) {
|
||||
line(std::format("h: min={:.4E} max={:.4E} mean={:.4E} std={:.4E}",
|
||||
s.mesh_size->h_min, s.mesh_size->h_max, s.mesh_size->h_mean, s.mesh_size->h_stddev));
|
||||
}
|
||||
if (s.bounding_box) {
|
||||
const auto& bb = *s.bounding_box;
|
||||
auto bline = [&](const char* nm, const BoundingBox& b){
|
||||
if (b.valid)
|
||||
line(std::format("bbox[{}]: x[{:.4f},{:.4f}] y[{:.4f},{:.4f}] z[{:.4f},{:.4f}]",
|
||||
nm, b.xMin,b.xMax, b.yMin,b.yMax, b.zMin,b.zMax));
|
||||
else
|
||||
line(std::format("bbox[{}]: <absent>", nm));
|
||||
};
|
||||
bline("core", bb.core);
|
||||
bline("star", bb.star);
|
||||
bline("vacuum", bb.vacuum);
|
||||
}
|
||||
if (s.outer_bounds) {
|
||||
line(std::format("outer: min={:.4f} max={:.4f} mean={:.4f}",
|
||||
s.outer_bounds->min, s.outer_bounds->max, s.outer_bounds->mean));
|
||||
}
|
||||
if (s.centroid) {
|
||||
line(std::format("centroid: x={:.6f} y={:.6f} z={:.6f} offset={:.6f}",
|
||||
s.centroid->x, s.centroid->y, s.centroid->z, s.centroid->offset));
|
||||
}
|
||||
|
||||
for (const auto& w : s.warnings) line("WARNING: " + w);
|
||||
for (const auto& e : s.errors) line(std::format("ERROR: {}", e));
|
||||
return o;
|
||||
}
|
||||
}
|
||||
@@ -2,6 +2,8 @@
|
||||
#include "mfem.hpp"
|
||||
#include <print>
|
||||
|
||||
#include "stroid/topology/curvilinear.h"
|
||||
|
||||
namespace stroid::utils {
|
||||
void MarkFlippedElements(mfem::Mesh& mesh) {
|
||||
for (int i = 0; i < mesh.GetNE(); i++) {
|
||||
@@ -51,4 +53,44 @@ namespace stroid::utils {
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void ExportJacobianRadialProfile(mfem::Mesh& mesh, const std::string& filename) {
|
||||
std::ofstream ofs(filename);
|
||||
|
||||
if (!ofs.good()) {
|
||||
throw std::runtime_error(std::format("Stroid: Could not open file {} for writing Jacobian radial profile", filename));
|
||||
}
|
||||
|
||||
ofs << "Radius,DetJ,Attribute,ElementID\n";
|
||||
ofs.precision(10);
|
||||
|
||||
const int sample_order = 2 * mesh.GetNodes()->FESpace()->GetMaxElementOrder() + 2;
|
||||
for (int i = 0; i < mesh.GetNE(); ++i) {
|
||||
mfem::ElementTransformation *T = mesh.GetElementTransformation(i);
|
||||
const int attr = mesh.GetAttribute(i);
|
||||
|
||||
const mfem::IntegrationRule &ir = mfem::IntRules.Get(T->GetGeometryType(), sample_order);
|
||||
|
||||
for (int j = 0; j < ir.GetNPoints(); ++j) {
|
||||
T->SetIntPoint(&ir.IntPoint(j));
|
||||
|
||||
mfem::Vector pos;
|
||||
T->Transform(ir.IntPoint(j), pos);
|
||||
|
||||
const double r = pos.Norml2();
|
||||
const double detJ = T->Jacobian().Det();
|
||||
|
||||
ofs << r << "," << detJ << "," << attr << ',' << i << "\n";
|
||||
}
|
||||
}
|
||||
ofs.close();
|
||||
std::println("Jacobian radial profile exported to {}", filename);
|
||||
}
|
||||
|
||||
std::unique_ptr<mfem::Mesh> BuildProjected(const mfem::Mesh& reference, const fourdst::config::Config<config::MeshConfig>& cfg) {
|
||||
auto projected = std::make_unique<mfem::Mesh>(reference);
|
||||
topology::PromoteToHighOrder(*projected, cfg);
|
||||
topology::ProjectMesh(*projected, cfg);
|
||||
return projected;
|
||||
}
|
||||
}
|
||||
|
||||
@@ -13,21 +13,73 @@ stroid_sources = files(
|
||||
'lib/topology/optimize.cpp',
|
||||
'lib/IO/mesh.cpp',
|
||||
'lib/utils/mesh_utils.cpp',
|
||||
'lib/utils/mesh_stats.cpp',
|
||||
'lib/refinement/uniform.cpp',
|
||||
)
|
||||
|
||||
stroid_lib = static_library(
|
||||
'libstroid',
|
||||
stroid_sources,
|
||||
include_directories: stroid_include_files,
|
||||
dependencies: dependencies,
|
||||
install: true
|
||||
)
|
||||
if get_option('build_python')
|
||||
if host_machine.system() == 'darwin'
|
||||
stroid_lib_rpath_args = [
|
||||
'-Wl,-rpath,@loader_path',
|
||||
'-Wl,-rpath,@loader_path/../../fourdst/lib',
|
||||
'-Wl,-rpath,@loader_path/../../fourdst/lib/vendor',
|
||||
]
|
||||
stroid_lib_rpath = ''
|
||||
|
||||
stroid_dep = declare_dependency(
|
||||
link_with: stroid_lib,
|
||||
include_directories: stroid_include_files,
|
||||
dependencies: dependencies
|
||||
)
|
||||
stroid_ext_rpath_args = [
|
||||
'-Wl,-rpath,@loader_path/lib',
|
||||
'-Wl,-rpath,@loader_path/../fourdst/lib',
|
||||
'-Wl,-rpath,@loader_path/../fourdst/lib/vendor',
|
||||
]
|
||||
stroid_ext_rpath = ''
|
||||
else
|
||||
stroid_lib_rpath_args = []
|
||||
stroid_lib_rpath = '$ORIGIN:' + '$ORIGIN/../../fourdst/lib:' + '$ORIGIN/../../fourdst/lib/vendor'
|
||||
|
||||
stroid_ext_rpath_args = []
|
||||
stroid_ext_rpath = '$ORIGIN/lib:' + '$ORIGIN/../fourdst/lib:' + '$ORIGIN/../fourdst/lib/vendor'
|
||||
endif
|
||||
|
||||
libstroid = static_library(
|
||||
'libstroid',
|
||||
stroid_sources,
|
||||
include_directories: stroid_include_files,
|
||||
dependencies: dependencies,
|
||||
install_dir: stroid_libdir,
|
||||
link_args: stroid_lib_rpath_args,
|
||||
build_rpath: stroid_lib_rpath,
|
||||
install_rpath: stroid_lib_rpath,
|
||||
)
|
||||
else
|
||||
libstroid = static_library(
|
||||
'libstroid',
|
||||
stroid_sources,
|
||||
include_directories: stroid_include_files,
|
||||
dependencies: dependencies,
|
||||
install: true,
|
||||
)
|
||||
endif
|
||||
|
||||
|
||||
if get_option('build_python')
|
||||
stroid_iface_dep = declare_dependency(
|
||||
dependencies: dependencies
|
||||
).partial_dependency(compile_args: true, includes: true)
|
||||
|
||||
stroid_dep = declare_dependency(
|
||||
link_with: libstroid,
|
||||
include_directories: stroid_include_files,
|
||||
dependencies: [stroid_iface_dep]
|
||||
)
|
||||
else
|
||||
stroid_dep = declare_dependency(
|
||||
link_with: libstroid,
|
||||
include_directories: stroid_include_files,
|
||||
dependencies: dependencies
|
||||
)
|
||||
endif
|
||||
|
||||
meson.override_dependency('stroid', stroid_dep)
|
||||
|
||||
install_subdir(
|
||||
'include/stroid',
|
||||
|
||||
77
src/python/IO/bindings.cpp
Normal file
77
src/python/IO/bindings.cpp
Normal file
@@ -0,0 +1,77 @@
|
||||
#include <pybind11/pybind11.h>
|
||||
#include <pybind11/stl.h>
|
||||
#include "bindings.h"
|
||||
|
||||
#include "stroid/IO/mesh.h"
|
||||
|
||||
namespace py = pybind11;
|
||||
|
||||
void register_io_bindings(pybind11::module_ &m) {
|
||||
py::enum_<stroid::IO::VISUALIZATION_MODE>(m, "VISUALIZATION_MODE")
|
||||
.value("NONE", stroid::IO::VISUALIZATION_MODE::NONE)
|
||||
.value("ELEMENT_ID", stroid::IO::VISUALIZATION_MODE::ELEMENT_ID)
|
||||
.value("BOUNDARY_ELEMENT_ID", stroid::IO::VISUALIZATION_MODE::BOUNDARY_ELEMENT_ID)
|
||||
.export_values();
|
||||
|
||||
m.def(
|
||||
"SaveStroidMesh",
|
||||
&stroid::IO::SaveStroidMesh,
|
||||
py::arg("mesh"),
|
||||
py::arg("filename"),
|
||||
py::arg("comment")="",
|
||||
"Save a Stroid mesh to a file."
|
||||
);
|
||||
m.def(
|
||||
"SaveMesh",
|
||||
py::overload_cast<const stroid::StroidMesh&, const std::string&>(&stroid::IO::SaveMesh),
|
||||
py::arg("mesh"),
|
||||
py::arg("filename")
|
||||
);
|
||||
m.def(
|
||||
"SaveVTU",
|
||||
py::overload_cast<const stroid::StroidMesh&, const std::string&>(&stroid::IO::SaveVTU),
|
||||
py::arg("mesh"),
|
||||
py::arg("filename")
|
||||
);
|
||||
m.def(
|
||||
"ViewMesh",
|
||||
py::overload_cast<const stroid::StroidMesh&, const std::string&, stroid::IO::VISUALIZATION_MODE, const std::string&, int>(&stroid::IO::ViewMesh),
|
||||
py::arg("mesh"),
|
||||
py::arg("title")="",
|
||||
py::arg("mode")=stroid::IO::VISUALIZATION_MODE::ELEMENT_ID,
|
||||
py::arg("host")="localhost",
|
||||
py::arg("port")=19916
|
||||
);
|
||||
|
||||
m.def(
|
||||
"VisualizeFaceValence",
|
||||
py::overload_cast<const stroid::StroidMesh&, const std::string&, int>(&stroid::IO::VisualizeFaceValence),
|
||||
py::arg("mesh"),
|
||||
py::arg("host")="localhost",
|
||||
py::arg("port")=19916
|
||||
);
|
||||
|
||||
m.def(
|
||||
"ParseStroidMesh",
|
||||
[](const std::string& buf) {
|
||||
std::stringstream ss;
|
||||
ss << buf;
|
||||
auto r = stroid::IO::ParseStroidMesh(ss);
|
||||
if (!r.has_value()) {
|
||||
throw std::runtime_error("Parsing failed: " + r.error());
|
||||
}
|
||||
return std::move(r.value());
|
||||
}
|
||||
);
|
||||
|
||||
m.def(
|
||||
"LoadStroidMesh",
|
||||
[](const std::string& filename) {
|
||||
auto r = stroid::IO::LoadStroidMesh(filename);
|
||||
if (!r.has_value()) {
|
||||
throw std::runtime_error("Loading " + filename + " failed: " + r.error());
|
||||
}
|
||||
return std::move(r.value());
|
||||
}
|
||||
);
|
||||
}
|
||||
5
src/python/IO/bindings.h
Normal file
5
src/python/IO/bindings.h
Normal file
@@ -0,0 +1,5 @@
|
||||
#pragma once
|
||||
|
||||
#include <pybind11/pybind11.h>
|
||||
|
||||
void register_io_bindings(pybind11::module_& m);
|
||||
36
src/python/bindings.cpp
Normal file
36
src/python/bindings.cpp
Normal file
@@ -0,0 +1,36 @@
|
||||
#include <pybind11/pybind11.h>
|
||||
#include <pybind11/stl.h>
|
||||
|
||||
#include "config/bindings.h"
|
||||
#include "exceptions/bindings.h"
|
||||
#include "IO/bindings.h"
|
||||
#include "refinement/bindings.h"
|
||||
#include "utils/bindings.h"
|
||||
|
||||
#include "stroid/exceptions/stroid_error.h"
|
||||
|
||||
#include "stroid/stroid.h"
|
||||
#include "stroid/version.h"
|
||||
|
||||
PYBIND11_MODULE(_stroid, m) {
|
||||
m.doc() = "Python bindings for stroid library.";
|
||||
|
||||
register_utils_bindings(m);
|
||||
|
||||
auto exceptionsMod = m.def_submodule("exceptions", "Exceptions Bindings");
|
||||
register_exceptions_bindings(exceptionsMod);
|
||||
|
||||
auto configMod = m.def_submodule("config", "Config Bindings");
|
||||
register_config_bindings(configMod);
|
||||
|
||||
auto IOMod = m.def_submodule("IO", "IO Bindings");
|
||||
register_io_bindings(IOMod);
|
||||
|
||||
auto refinementMod = m.def_submodule("refinement", "Refinement Bindings");
|
||||
register_refinement_bindings(refinementMod);
|
||||
|
||||
m.def("GenerateMesh", pybind11::overload_cast<const stroid::config::MeshConfig&>(&stroid::GenerateMesh), "Generate a mesh from a MeshConfig object.");
|
||||
m.def("GenerateMesh", pybind11::overload_cast<const std::string&>(&stroid::GenerateMesh), "Generate a mesh from a config file path.");
|
||||
|
||||
|
||||
}
|
||||
202
src/python/config/bindings.cpp
Normal file
202
src/python/config/bindings.cpp
Normal file
@@ -0,0 +1,202 @@
|
||||
#include <pybind11/pybind11.h>
|
||||
#include <pybind11/stl.h>
|
||||
#include "bindings.h"
|
||||
|
||||
#include "stroid/config/config.h"
|
||||
|
||||
namespace py = pybind11;
|
||||
|
||||
void register_config_bindings(pybind11::module_& m) {
|
||||
py::class_<stroid::config::OptimizationMethods>(m, "OptimizationMethods")
|
||||
.def(py::init([](bool tmop, bool smoothstep) {
|
||||
return stroid::config::OptimizationMethods{tmop, smoothstep};
|
||||
}), py::arg("tmop") = false, py::arg("smoothstep") = true)
|
||||
.def_property("tmop",
|
||||
[](const stroid::config::OptimizationMethods& self) {
|
||||
return self.tmop;
|
||||
},
|
||||
[](stroid::config::OptimizationMethods& self, bool value) {
|
||||
self.tmop = value;
|
||||
}
|
||||
)
|
||||
.def_property("smoothstep",
|
||||
[](const stroid::config::OptimizationMethods& self) {
|
||||
return self.smoothstep;
|
||||
},
|
||||
[](stroid::config::OptimizationMethods& self, bool value) {
|
||||
self.smoothstep = value;
|
||||
}
|
||||
);
|
||||
|
||||
py::class_<stroid::config::MeshConfig>(m, "MeshConfig")
|
||||
.def(py::init([](py::kwargs kwargs) {
|
||||
int ref_level = 4, order = 3;
|
||||
size_t continuity_order = 2, surface_bdr_id = 1, inf_bdr_id = 2, core_id = 1, envelope_id = 2, vacuum_id=3;
|
||||
bool include_external_domain = true;
|
||||
double r_core = 0.25, r_star = 1.0, flattening = 0.0, r_inf = 6.0, r_instability = 1e-14, core_steepness = 1.0;
|
||||
stroid::config::OptimizationMethods opt_method{.tmop = false, .smoothstep = true};
|
||||
|
||||
return stroid::config::MeshConfig{
|
||||
.refinement_levels = kwargs.contains("refinement_levels") ? kwargs["refinement_levels"].cast<int>() : ref_level,
|
||||
.order = kwargs.contains("order") ? kwargs["order"].cast<int>() : order,
|
||||
.include_external_domain = kwargs.contains("include_external_domain") ? kwargs["include_external_domain"].cast<bool>() : include_external_domain,
|
||||
.r_core = kwargs.contains("r_core") ? kwargs["r_core"].cast<double>() : r_core,
|
||||
.r_star = kwargs.contains("r_star") ? kwargs["r_star"].cast<double>() : r_star,
|
||||
.flattening = kwargs.contains("flattening") ? kwargs["flattening"].cast<double>() : flattening,
|
||||
.r_infinity = kwargs.contains("r_infinity") ? kwargs["r_infinity"].cast<double>() : r_inf,
|
||||
.r_instability = kwargs.contains("r_instability") ? kwargs["r_instability"].cast<double>() : r_instability,
|
||||
.core_steepness = kwargs.contains("core_steepness") ? kwargs["core_steepness"].cast<double>() : core_steepness,
|
||||
.continuity_order = kwargs.contains("continuity_order") ? kwargs["continuity_order"].cast<size_t>() : continuity_order,
|
||||
.surface_bdr_id = kwargs.contains("surface_bdr_id") ? kwargs["surface_bdr_id"].cast<size_t>() : surface_bdr_id,
|
||||
.inf_bdr_id = kwargs.contains("inf_bdr_id") ? kwargs["inf_bdr_id"].cast<size_t>() : inf_bdr_id,
|
||||
.core_id = kwargs.contains("core_id") ? kwargs["core_id"].cast<size_t>() : core_id,
|
||||
.envelope_id = kwargs.contains("envelope_id") ? kwargs["envelope_id"].cast<size_t>() : envelope_id,
|
||||
.vacuum_id = kwargs.contains("vacuum_id") ? kwargs["vacuum_id"].cast<size_t>() : vacuum_id,
|
||||
.optimization_methods = kwargs.contains("optimization_methods") ? kwargs["optimization_methods"].cast<stroid::config::OptimizationMethods>() : opt_method
|
||||
};
|
||||
}))
|
||||
.def_property(
|
||||
"refinement_levels",
|
||||
[](const stroid::config::MeshConfig& self) {
|
||||
return self.refinement_levels;
|
||||
},
|
||||
[](stroid::config::MeshConfig& self, int value) {
|
||||
self.refinement_levels = value;
|
||||
}
|
||||
)
|
||||
.def_property(
|
||||
"order",
|
||||
[](const stroid::config::MeshConfig& self) {
|
||||
return self.order;
|
||||
},
|
||||
[](stroid::config::MeshConfig& self, int value) {
|
||||
self.order = value;
|
||||
}
|
||||
)
|
||||
.def_property(
|
||||
"include_external_domain",
|
||||
[](const stroid::config::MeshConfig& self) {
|
||||
return self.include_external_domain;
|
||||
},
|
||||
[](stroid::config::MeshConfig& self, bool value) {
|
||||
self.include_external_domain = value;
|
||||
}
|
||||
)
|
||||
.def_property(
|
||||
"r_core",
|
||||
[](const stroid::config::MeshConfig& self) {
|
||||
return self.r_core;
|
||||
},
|
||||
[](stroid::config::MeshConfig& self, int value) {
|
||||
self.order = value;
|
||||
}
|
||||
)
|
||||
.def_property(
|
||||
"r_star",
|
||||
[](const stroid::config::MeshConfig& self) {
|
||||
return self.r_star;
|
||||
},
|
||||
[](stroid::config::MeshConfig& self, double value) {
|
||||
self.r_star = value;
|
||||
}
|
||||
)
|
||||
.def_property(
|
||||
"flattening",
|
||||
[](const stroid::config::MeshConfig& self) {
|
||||
return self.flattening;
|
||||
},
|
||||
[](stroid::config::MeshConfig& self, double value) {
|
||||
self.flattening = value;
|
||||
}
|
||||
)
|
||||
.def_property(
|
||||
"r_infinity",
|
||||
[](const stroid::config::MeshConfig& self) {
|
||||
return self.r_infinity;
|
||||
},
|
||||
[](stroid::config::MeshConfig& self, double value) {
|
||||
self.r_infinity = value;
|
||||
}
|
||||
)
|
||||
.def_property(
|
||||
"r_instability",
|
||||
[](const stroid::config::MeshConfig& self) {
|
||||
return self.r_instability;
|
||||
},
|
||||
[](stroid::config::MeshConfig& self, double value) {
|
||||
self.r_instability = value;
|
||||
}
|
||||
)
|
||||
.def_property(
|
||||
"core_steepness",
|
||||
[](const stroid::config::MeshConfig& self) {
|
||||
return self.core_steepness;
|
||||
},
|
||||
[](stroid::config::MeshConfig& self, double value) {
|
||||
self.core_steepness = value;
|
||||
}
|
||||
)
|
||||
.def_property(
|
||||
"continuity_order",
|
||||
[](const stroid::config::MeshConfig& self) {
|
||||
return self.continuity_order;
|
||||
},
|
||||
[](stroid::config::MeshConfig& self, size_t value) {
|
||||
self.continuity_order = value;
|
||||
}
|
||||
)
|
||||
.def_property(
|
||||
"surface_bdr_id",
|
||||
[](const stroid::config::MeshConfig& self) {
|
||||
return self.surface_bdr_id;
|
||||
},
|
||||
[](stroid::config::MeshConfig& self, size_t value) {
|
||||
self.surface_bdr_id = value;
|
||||
}
|
||||
)
|
||||
.def_property(
|
||||
"inf_bdr_id",
|
||||
[](const stroid::config::MeshConfig& self) {
|
||||
return self.inf_bdr_id;
|
||||
},
|
||||
[](stroid::config::MeshConfig& self, size_t value) {
|
||||
self.inf_bdr_id = value;
|
||||
}
|
||||
)
|
||||
.def_property(
|
||||
"core_id",
|
||||
[](const stroid::config::MeshConfig& self) {
|
||||
return self.core_id;
|
||||
},
|
||||
[](stroid::config::MeshConfig& self, size_t value) {
|
||||
self.core_id = value;
|
||||
}
|
||||
)
|
||||
.def_property(
|
||||
"envelope_id",
|
||||
[](const stroid::config::MeshConfig& self) {
|
||||
return self.envelope_id;
|
||||
},
|
||||
[](stroid::config::MeshConfig& self, size_t value) {
|
||||
self.envelope_id = value;
|
||||
}
|
||||
)
|
||||
.def_property(
|
||||
"vacuum_id",
|
||||
[](const stroid::config::MeshConfig& self) {
|
||||
return self.vacuum_id;
|
||||
},
|
||||
[](stroid::config::MeshConfig& self, size_t value) {
|
||||
self.vacuum_id = value;
|
||||
}
|
||||
)
|
||||
.def_property(
|
||||
"optimization_methods",
|
||||
[](const stroid::config::MeshConfig& self) {
|
||||
return self.optimization_methods;
|
||||
},
|
||||
[](stroid::config::MeshConfig& self, stroid::config::OptimizationMethods value) {
|
||||
self.optimization_methods = value;
|
||||
}
|
||||
);
|
||||
}
|
||||
5
src/python/config/bindings.h
Normal file
5
src/python/config/bindings.h
Normal file
@@ -0,0 +1,5 @@
|
||||
#pragma once
|
||||
|
||||
#include <pybind11/pybind11.h>
|
||||
|
||||
void register_config_bindings(pybind11::module_& m);
|
||||
14
src/python/exceptions/bindings.cpp
Normal file
14
src/python/exceptions/bindings.cpp
Normal file
@@ -0,0 +1,14 @@
|
||||
#include <pybind11/pybind11.h>
|
||||
|
||||
#include "bindings.h"
|
||||
#include "stroid/exceptions/exceptions.h"
|
||||
|
||||
namespace py = pybind11;
|
||||
|
||||
|
||||
void register_exceptions_bindings(py::module_& m) {
|
||||
py::register_exception<stroid::exceptions::StroidError>(m, "StroidError");
|
||||
py::register_exception<stroid::exceptions::StroidContinuityError>(m, "StroidContinuityError", m.attr("StroidError"));
|
||||
py::register_exception<stroid::exceptions::StroidMeshError>(m, "StroidMeshError", m.attr("StroidError"));
|
||||
py::register_exception<stroid::exceptions::StroidMissingReferenceMesh>(m, "StroidMissingReferenceMesh", m.attr("StroidMeshError"));
|
||||
}
|
||||
5
src/python/exceptions/bindings.h
Normal file
5
src/python/exceptions/bindings.h
Normal file
@@ -0,0 +1,5 @@
|
||||
#pragma once
|
||||
|
||||
#include <pybind11/pybind11.h>
|
||||
|
||||
void register_exceptions_bindings(pybind11::module_& m);
|
||||
11
src/python/refinement/bindings.cpp
Normal file
11
src/python/refinement/bindings.cpp
Normal file
@@ -0,0 +1,11 @@
|
||||
#include <pybind11/pybind11.h>
|
||||
#include <pybind11/stl.h>
|
||||
#include "bindings.h"
|
||||
|
||||
#include "stroid/refinement/uniform.h"
|
||||
|
||||
namespace py = pybind11;
|
||||
|
||||
void register_refinement_bindings(pybind11::module_ &m) {
|
||||
m.def("UniformRefinement", &stroid::refinement::UniformRefinement, py::arg("mesh"), py::arg("levels"), "Perform uniform refinement without breaking the higher order structure");
|
||||
}
|
||||
5
src/python/refinement/bindings.h
Normal file
5
src/python/refinement/bindings.h
Normal file
@@ -0,0 +1,5 @@
|
||||
#pragma once
|
||||
|
||||
#include <pybind11/pybind11.h>
|
||||
|
||||
void register_refinement_bindings(pybind11::module_& m);
|
||||
45
src/python/stroid/__init__.py
Normal file
45
src/python/stroid/__init__.py
Normal file
@@ -0,0 +1,45 @@
|
||||
import io
|
||||
import sys
|
||||
|
||||
from ._stroid import *
|
||||
|
||||
from ._stroid import config
|
||||
from ._stroid import exceptions
|
||||
from ._stroid import IO
|
||||
from ._stroid import refinement
|
||||
from ._stroid import stats
|
||||
from ._stroid import GenerateMesh
|
||||
from ._stroid import StroidMesh
|
||||
|
||||
sys.modules['stroid.config'] = config
|
||||
sys.modules['stroid.exceptions'] = exceptions
|
||||
sys.modules['stroid.IO'] = IO
|
||||
sys.modules["stroid.refinement"] = refinement
|
||||
sys.modules["stroid.stats"] = stats
|
||||
|
||||
|
||||
__all__ = ['config', 'exceptions', 'IO', 'refinement', 'stats', 'GenerateMesh', 'StroidMesh']
|
||||
|
||||
import importlib.metadata
|
||||
|
||||
|
||||
try:
|
||||
_meta = importlib.metadata.metadata('stroid')
|
||||
__version__ = _meta['Version']
|
||||
__license__ = _meta['License']
|
||||
__description__ = _meta['Summary']
|
||||
__author__ = 'Emily M. Boudreaux'
|
||||
__url__ = 'https://github.com/4D-STAR/stroid'
|
||||
except importlib.metadata.PackageNotFoundError :
|
||||
__version__ = 'unknown - Package not installed'
|
||||
__license__ = 'GNU General Public License v3.0'
|
||||
__email__ = 'emily.boudreaux@dartmouth.edu'
|
||||
__url__ = 'https://github.com/4D-STAR/stroid'
|
||||
|
||||
|
||||
import os
|
||||
from pathlib import Path
|
||||
from typing import List
|
||||
|
||||
_PACKAGE_DIR = Path(__file__).resolve().parent
|
||||
|
||||
187
src/python/utils/bindings.cpp
Normal file
187
src/python/utils/bindings.cpp
Normal file
@@ -0,0 +1,187 @@
|
||||
#include <pybind11/pybind11.h>
|
||||
#include <pybind11/stl.h>
|
||||
#include "bindings.h"
|
||||
|
||||
#include "stroid/utils/types.h"
|
||||
#include "stroid/utils/mesh_stats.h"
|
||||
#include "stroid/utils/mesh_utils.h"
|
||||
|
||||
namespace py = pybind11;
|
||||
|
||||
void register_stats_bindings(pybind11::module_ &m) {
|
||||
auto statsMod = m.def_submodule("stats", "Stats Bindings");
|
||||
py::enum_<stroid::stats::MeshStatFeatures>(statsMod, "MeshStatFeatures", py::arithmetic())
|
||||
.value("NONE", stroid::stats::MeshStatFeatures::NONE)
|
||||
.value("RADIUS", stroid::stats::MeshStatFeatures::RADIUS)
|
||||
.value("AXES", stroid::stats::MeshStatFeatures::AXES)
|
||||
.value("ELLIPTICITY", stroid::stats::MeshStatFeatures::ELLIPTICITY)
|
||||
.value("BOWING", stroid::stats::MeshStatFeatures::BOWING)
|
||||
.value("CONFORMITY", stroid::stats::MeshStatFeatures::CONFORMITY)
|
||||
.value("JACOBIAN", stroid::stats::MeshStatFeatures::JACOBIAN)
|
||||
.value("VOLUME_AREA", stroid::stats::MeshStatFeatures::VOLUME_AREA)
|
||||
.value("ELEMENT_COUNT", stroid::stats::MeshStatFeatures::ELEMENT_COUNT)
|
||||
.value("MESH_SIZE", stroid::stats::MeshStatFeatures::MESH_SIZE)
|
||||
.value("OUTER_BOUNDS", stroid::stats::MeshStatFeatures::OUTER_BOUNDS)
|
||||
.value("CENTROID", stroid::stats::MeshStatFeatures::CENTROID)
|
||||
.value("CONFIG_META", stroid::stats::MeshStatFeatures::CONFIG_META)
|
||||
.value("BOUNDING_BOX", stroid::stats::MeshStatFeatures::BOUNDING_BOX)
|
||||
.export_values();
|
||||
|
||||
py::class_<stroid::stats::RadiusStats>(statsMod, "RadiusStats")
|
||||
.def_readonly("min", &stroid::stats::RadiusStats::min)
|
||||
.def_readonly("max", &stroid::stats::RadiusStats::max)
|
||||
.def_readonly("mean", &stroid::stats::RadiusStats::mean)
|
||||
.def_readonly("stddev", &stroid::stats::RadiusStats::stddev)
|
||||
.def_readonly("n_samples", &stroid::stats::RadiusStats::n_samples);
|
||||
|
||||
py::class_<stroid::stats::AxisStats>(statsMod, "AxisStats")
|
||||
.def_readonly("semi_major", &stroid::stats::AxisStats::semi_major)
|
||||
.def_readonly("semi_minor", &stroid::stats::AxisStats::semi_minor);
|
||||
|
||||
py::class_<stroid::stats::EllipticityStats>(statsMod, "EllipticityStats")
|
||||
.def_readonly("flattening", &stroid::stats::EllipticityStats::flattening)
|
||||
.def_readonly("polar_equatorial", &stroid::stats::EllipticityStats::polar_equatorial)
|
||||
.def_readonly("radius_uniformity", &stroid::stats::EllipticityStats::radius_uniformity);
|
||||
|
||||
py::class_<stroid::stats::BowingStats>(statsMod, "BowingStats")
|
||||
.def_readonly("max_inward", &stroid::stats::BowingStats::max_inward)
|
||||
.def_readonly("max_outward", &stroid::stats::BowingStats::max_outward)
|
||||
.def_readonly("rms", &stroid::stats::BowingStats::rms)
|
||||
.def_readonly("worst_at_radius", &stroid::stats::BowingStats::worst_at_radius);
|
||||
|
||||
py::class_<stroid::stats::ConformityStats>(statsMod, "ConformityStats")
|
||||
.def_readonly("conforming", &stroid::stats::ConformityStats::conforming)
|
||||
.def_readonly("n_nonconforming_faces", &stroid::stats::ConformityStats::n_nonconforming_faces);
|
||||
|
||||
py::class_<stroid::stats::JacobianStats>(statsMod, "JacobianStats")
|
||||
.def_readonly("detJ_min", &stroid::stats::JacobianStats::detJ_min)
|
||||
.def_readonly("detJ_max", &stroid::stats::JacobianStats::detJ_max)
|
||||
.def_readonly("n_flipped", &stroid::stats::JacobianStats::n_flipped)
|
||||
.def_readonly("min_detJ_ratio", &stroid::stats::JacobianStats::min_detJ_ratio)
|
||||
.def_readonly("worst_ratio_at_radius", &stroid::stats::JacobianStats::worst_ratio_at_radius)
|
||||
.def_readonly("detJ_min_at_radius", &stroid::stats::JacobianStats::detJ_min_at_radius)
|
||||
.def_readonly("n_elements", &stroid::stats::JacobianStats::n_elements);
|
||||
|
||||
py::class_<stroid::stats::VolumeAreaStats>(statsMod, "VolumeAreaStats")
|
||||
.def_readonly("stellar_volume", &stroid::stats::VolumeAreaStats::stellar_volume)
|
||||
.def_readonly("surface_area", &stroid::stats::VolumeAreaStats::surface_area)
|
||||
.def_readonly("analytic_volume", &stroid::stats::VolumeAreaStats::analytic_volume)
|
||||
.def_readonly("analytic_area", &stroid::stats::VolumeAreaStats::analytic_area);
|
||||
|
||||
py::class_<stroid::stats::ElementCounts>(statsMod, "ElementCounts")
|
||||
.def_readonly("total", &stroid::stats::ElementCounts::total)
|
||||
.def_readonly("core", &stroid::stats::ElementCounts::core)
|
||||
.def_readonly("envelope", &stroid::stats::ElementCounts::envelope)
|
||||
.def_readonly("vacuum", &stroid::stats::ElementCounts::vacuum)
|
||||
.def_readonly("other", &stroid::stats::ElementCounts::other)
|
||||
.def_readonly("n_vertices", &stroid::stats::ElementCounts::n_vertices);
|
||||
|
||||
py::class_<stroid::stats::MeshSizeStats>(statsMod, "MeshSizeStats")
|
||||
.def_readonly("h_min", &stroid::stats::MeshSizeStats::h_min)
|
||||
.def_readonly("h_max", &stroid::stats::MeshSizeStats::h_max)
|
||||
.def_readonly("h_mean", &stroid::stats::MeshSizeStats::h_mean)
|
||||
.def_readonly("h_stddev", &stroid::stats::MeshSizeStats::h_stddev);
|
||||
|
||||
py::class_<stroid::stats::OuterBoundsStats>(statsMod, "OuterBoundsStats")
|
||||
.def_readonly("min", &stroid::stats::OuterBoundsStats::min)
|
||||
.def_readonly("max", &stroid::stats::OuterBoundsStats::max)
|
||||
.def_readonly("mean", &stroid::stats::OuterBoundsStats::mean)
|
||||
.def_readonly("n_samples", &stroid::stats::OuterBoundsStats::n_samples);
|
||||
|
||||
py::class_<stroid::stats::CentroidStats>(statsMod, "CentroidStats")
|
||||
.def_readonly("x", &stroid::stats::CentroidStats::x)
|
||||
.def_readonly("y", &stroid::stats::CentroidStats::y)
|
||||
.def_readonly("z", &stroid::stats::CentroidStats::z)
|
||||
.def_readonly("offset", &stroid::stats::CentroidStats::offset);
|
||||
|
||||
py::class_<stroid::stats::ConfigMeta>(statsMod, "ConfigMeta")
|
||||
.def_readonly("r_core", &stroid::stats::ConfigMeta::r_core)
|
||||
.def_readonly("r_star", &stroid::stats::ConfigMeta::r_star)
|
||||
.def_readonly("flattening", &stroid::stats::ConfigMeta::flattening)
|
||||
.def_readonly("r_infinity", &stroid::stats::ConfigMeta::r_infinity)
|
||||
.def_readonly("geom_order", &stroid::stats::ConfigMeta::geom_order)
|
||||
.def_readonly("refinement_levels", &stroid::stats::ConfigMeta::refinement_levels)
|
||||
.def_readonly("has_external_domain", &stroid::stats::ConfigMeta::has_external_domain);
|
||||
|
||||
py::class_<stroid::stats::BoundingBox>(statsMod, "BoundingBox")
|
||||
.def_readonly("xMin", &stroid::stats::BoundingBox::xMin)
|
||||
.def_readonly("xMax", &stroid::stats::BoundingBox::xMax)
|
||||
.def_readonly("yMin", &stroid::stats::BoundingBox::yMin)
|
||||
.def_readonly("yMax", &stroid::stats::BoundingBox::yMax)
|
||||
.def_readonly("zMin", &stroid::stats::BoundingBox::zMin)
|
||||
.def_readonly("zMax", &stroid::stats::BoundingBox::zMax)
|
||||
.def_readonly("valid", &stroid::stats::BoundingBox::valid)
|
||||
.def("dx", &stroid::stats::BoundingBox::dx)
|
||||
.def("dy", &stroid::stats::BoundingBox::dy)
|
||||
.def("dz", &stroid::stats::BoundingBox::dz)
|
||||
.def("diag", &stroid::stats::BoundingBox::diag);
|
||||
|
||||
py::class_<stroid::stats::BoundingBoxStats>(statsMod, "BoundingBoxStats")
|
||||
.def_readonly("core", &stroid::stats::BoundingBoxStats::core)
|
||||
.def_readonly("star", &stroid::stats::BoundingBoxStats::star)
|
||||
.def_readonly("vacuum", &stroid::stats::BoundingBoxStats::vacuum);
|
||||
|
||||
py::class_<stroid::stats::MeshStats>(statsMod, "MeshStats")
|
||||
.def_readonly("computed", &stroid::stats::MeshStats::computed)
|
||||
.def_readonly("radius", &stroid::stats::MeshStats::radius)
|
||||
.def_readonly("axes", &stroid::stats::MeshStats::axes)
|
||||
.def_readonly("ellipticity", &stroid::stats::MeshStats::ellipticity)
|
||||
.def_readonly("bowing", &stroid::stats::MeshStats::bowing)
|
||||
.def_readonly("conformity", &stroid::stats::MeshStats::conformity)
|
||||
.def_readonly("jacobian", &stroid::stats::MeshStats::jacobian)
|
||||
.def_readonly("jacobian_stellar", &stroid::stats::MeshStats::jacobian_stellar)
|
||||
.def_readonly("jacobian_vacuum", &stroid::stats::MeshStats::jacobian_vacuum)
|
||||
.def_readonly("volume", &stroid::stats::MeshStats::volume)
|
||||
.def_readonly("element_counts", &stroid::stats::MeshStats::element_counts)
|
||||
.def_readonly("mesh_size", &stroid::stats::MeshStats::mesh_size)
|
||||
.def_readonly("outer_bounds", &stroid::stats::MeshStats::outer_bounds)
|
||||
.def_readonly("centroid", &stroid::stats::MeshStats::centroid)
|
||||
.def_readonly("config_meta", &stroid::stats::MeshStats::config_meta)
|
||||
.def_readonly("bounding_box", &stroid::stats::MeshStats::bounding_box)
|
||||
.def_readonly("warnings", &stroid::stats::MeshStats::warnings)
|
||||
.def_readonly("errors", &stroid::stats::MeshStats::errors)
|
||||
.def("__repr__", [](const stroid::stats::MeshStats& self) {
|
||||
return stroid::stats::to_string(self);
|
||||
});
|
||||
|
||||
statsMod.attr("MESH_STAT_DEFAULT") = stroid::stats::MESH_STAT_DEFAULT;
|
||||
statsMod.attr("MESH_STAT_ALL") = stroid::stats::MESH_STAT_ALL;
|
||||
|
||||
statsMod.def(
|
||||
"ComputeMeshStats",
|
||||
&stroid::stats::ComputeMeshStats,
|
||||
py::arg("mesh"),
|
||||
py::arg("features") = stroid::stats::MESH_STAT_DEFAULT,
|
||||
py::arg("sample_order")=-1
|
||||
);
|
||||
}
|
||||
|
||||
void register_type_bindings(py::module_ &m) {
|
||||
py::enum_<stroid::MFEM_MESH_TYPE>(m, "MFEM_MESH_TYPE")
|
||||
.value("SERIAL", stroid::MFEM_MESH_TYPE::SERIAL)
|
||||
.value("PARALLEL", stroid::MFEM_MESH_TYPE::PARALLEL)
|
||||
.export_values();
|
||||
|
||||
py::class_<stroid::StroidMesh>(m, "StroidMesh")
|
||||
.def_property_readonly("type", [](const stroid::StroidMesh& self) {
|
||||
return (self.type == stroid::MFEM_MESH_TYPE::SERIAL) ? "SERIAL" : "PARALLEL";
|
||||
})
|
||||
.def_readonly("config", &stroid::StroidMesh::config)
|
||||
.def_readonly("refinement_levels", &stroid::StroidMesh::refinement_levels)
|
||||
.def("has_mesh", [](const stroid::StroidMesh& self) {
|
||||
return self.mesh != nullptr;
|
||||
})
|
||||
.def("has_rmesh", [](const stroid::StroidMesh& self) {
|
||||
return self.reference_mesh != nullptr;
|
||||
})
|
||||
.def("mesh_stats", &stroid::StroidMesh::mesh_stats)
|
||||
.def("__repr__", [](const stroid::StroidMesh& self) {
|
||||
return std::format("<StroidMesh [{}]: NE: {}, NV: {}>", (self.type == stroid::MFEM_MESH_TYPE::SERIAL) ? "SERIAL" : "PARALLEL", self.mesh->GetNE(), self.mesh->GetNV());
|
||||
});
|
||||
}
|
||||
|
||||
void register_utils_bindings(pybind11::module_ &m) {
|
||||
register_type_bindings(m);
|
||||
register_stats_bindings(m);
|
||||
}
|
||||
|
||||
5
src/python/utils/bindings.h
Normal file
5
src/python/utils/bindings.h
Normal file
@@ -0,0 +1,5 @@
|
||||
#pragma once
|
||||
|
||||
#include <pybind11/pybind11.h>
|
||||
|
||||
void register_utils_bindings(pybind11::module_& m);
|
||||
19
subprojects/packagefiles/pybind11/LICENSE.build
Normal file
19
subprojects/packagefiles/pybind11/LICENSE.build
Normal file
@@ -0,0 +1,19 @@
|
||||
Copyright (c) 2021 The Meson development team
|
||||
|
||||
Permission is hereby granted, free of charge, to any person obtaining a copy
|
||||
of this software and associated documentation files (the "Software"), to deal
|
||||
in the Software without restriction, including without limitation the rights
|
||||
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
||||
copies of the Software, and to permit persons to whom the Software is
|
||||
furnished to do so, subject to the following conditions:
|
||||
|
||||
The above copyright notice and this permission notice shall be included in all
|
||||
copies or substantial portions of the Software.
|
||||
|
||||
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
||||
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
||||
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
||||
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
||||
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
||||
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
||||
SOFTWARE.
|
||||
8
subprojects/packagefiles/pybind11/meson.build
Normal file
8
subprojects/packagefiles/pybind11/meson.build
Normal file
@@ -0,0 +1,8 @@
|
||||
project('pybind11', 'cpp',
|
||||
version : 'v3.0.0',
|
||||
license : 'BSD-3-Clause')
|
||||
|
||||
pybind11_incdir = include_directories('include')
|
||||
|
||||
pybind11_dep = declare_dependency(
|
||||
include_directories : pybind11_incdir)
|
||||
8
subprojects/pybind11.wrap
Normal file
8
subprojects/pybind11.wrap
Normal file
@@ -0,0 +1,8 @@
|
||||
[wrap-git]
|
||||
url = https://github.com/pybind/pybind11.git
|
||||
revision = v3.0.0
|
||||
depth = 1
|
||||
patch_directory = pybind11
|
||||
|
||||
[provide]
|
||||
pybind11 = pybind11_dep
|
||||
Reference in New Issue
Block a user