docs(docs): rebuilt
This commit is contained in:
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fi
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\echo "Please consult $(MANUAL_FILE).log to see the error messages" ; \
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$(LATEX_CMD) $(MANUAL_FILE) ;\
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latex_count=`expr $$latex_count - 1` ;\
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$(MKIDX_CMD) $(MANUAL_FILE).idx
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$(LATEX_CMD) $(MANUAL_FILE) || \
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if [ $$? != 0 ] ; then \
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\echo "Please consult $(MANUAL_FILE).log to see the error messages" ; \
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$(LATEX_CMD) $(MANUAL_FILE)
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clean:
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rm -f *.ps *.dvi *.aux *.toc *.idx *.ind *.ilg *.log *.out *.brf *.blg *.bbl $(MANUAL_FILE).pdf
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@@ -1,14 +1,18 @@
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\doxysection{Class List}
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Here are the classes, structs, unions and interfaces with brief descriptions\+:\begin{DoxyCompactList}
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\item\contentsline{section}{\mbox{\hyperlink{structfourdst_1_1composition_1_1_canonical_composition}{fourdst\+::composition\+::\+Canonical\+Composition}} \\*Represents the canonical (X, Y, Z) composition of stellar material }{\pageref{structfourdst_1_1composition_1_1_canonical_composition}}{}
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\item\contentsline{section}{\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{fourdst\+::composition\+::\+Composition}} \\*Manages a collection of chemical species and their abundances }{\pageref{classfourdst_1_1composition_1_1_composition}}{}
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\item\contentsline{section}{\mbox{\hyperlink{class_composition_abstract}{Composition\+Abstract}} \\*Abstract base class for chemical composition representations }{\pageref{class_composition_abstract}}{}
|
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\item\contentsline{section}{\mbox{\hyperlink{structfourdst_1_1composition_1_1_composition_1_1_composition_cache}{fourdst\+::composition\+::\+Composition\+::\+Composition\+Cache}} \\*Caches computed properties of the composition to avoid redundant calculations }{\pageref{structfourdst_1_1composition_1_1_composition_1_1_composition_cache}}{}
|
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\item\contentsline{section}{\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_composition_error}{fourdst\+::composition\+::exceptions\+::\+Composition\+Error}} \\*Base class for exceptions related to composition objects }{\pageref{classfourdst_1_1composition_1_1exceptions_1_1_composition_error}}{}
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\item\contentsline{section}{\mbox{\hyperlink{structstd_1_1hash_3_01fourdst_1_1atomic_1_1_species_01_4}{std\+::hash$<$ fourdst\+::atomic\+::\+Species $>$}} \\*Specialization of {\ttfamily std\+::hash} for {\ttfamily \doxylink{structfourdst_1_1atomic_1_1_species}{fourdst\+::atomic\+::\+Species}} }{\pageref{structstd_1_1hash_3_01fourdst_1_1atomic_1_1_species_01_4}}{}
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||||
\item\contentsline{section}{\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_invalid_composition_error}{fourdst\+::composition\+::exceptions\+::\+Invalid\+Composition\+Error}} \\*Exception thrown when a composition is in an invalid or inconsistent state }{\pageref{classfourdst_1_1composition_1_1exceptions_1_1_invalid_composition_error}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{structfourdst_1_1atomic_1_1_species}{fourdst\+::atomic\+::\+Species}} \\*Represents an atomic species (isotope) with its fundamental physical properties }{\pageref{structfourdst_1_1atomic_1_1_species}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_species_error}{fourdst\+::composition\+::exceptions\+::\+Species\+Error}} \\*Base class for exceptions related to atomic species }{\pageref{classfourdst_1_1composition_1_1exceptions_1_1_species_error}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_unknown_symbol_error}{fourdst\+::composition\+::exceptions\+::\+Unknown\+Symbol\+Error}} \\*Exception thrown when an unknown symbol is encountered }{\pageref{classfourdst_1_1composition_1_1exceptions_1_1_unknown_symbol_error}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_unregistered_symbol_error}{fourdst\+::composition\+::exceptions\+::\+Unregistered\+Symbol\+Error}} \\*Exception thrown when a symbol is used that has not been registered }{\pageref{classfourdst_1_1composition_1_1exceptions_1_1_unregistered_symbol_error}}{}
|
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\item\contentsline{section}{\mbox{\hyperlink{structfourdst_1_1composition_1_1CanonicalComposition}{fourdst\+::composition\+::\+Canonical\+Composition}} \\*Represents the canonical (X, Y, Z) composition of stellar material }{\pageref{structfourdst_1_1composition_1_1CanonicalComposition}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{fourdst\+::composition\+::\+Composition}} \\*Manages a collection of chemical species and their abundances }{\pageref{classfourdst_1_1composition_1_1Composition}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{classfourdst_1_1composition_1_1CompositionAbstract}{fourdst\+::composition\+::\+Composition\+Abstract}} \\*Abstract base class for chemical composition representations }{\pageref{classfourdst_1_1composition_1_1CompositionAbstract}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{structfourdst_1_1composition_1_1Composition_1_1CompositionCache}{fourdst\+::composition\+::\+Composition\+::\+Composition\+Cache}} \\*Caches computed properties of the composition to avoid redundant calculations }{\pageref{structfourdst_1_1composition_1_1Composition_1_1CompositionCache}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{classfourdst_1_1composition_1_1CompositionDecorator}{fourdst\+::composition\+::\+Composition\+Decorator}} }{\pageref{classfourdst_1_1composition_1_1CompositionDecorator}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1CompositionError}{fourdst\+::composition\+::exceptions\+::\+Composition\+Error}} \\*Base class for exceptions related to composition objects }{\pageref{classfourdst_1_1composition_1_1exceptions_1_1CompositionError}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{structfourdst_1_1composition_1_1utils_1_1CompositionHash}{fourdst\+::composition\+::utils\+::\+Composition\+Hash}} }{\pageref{structfourdst_1_1composition_1_1utils_1_1CompositionHash}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{structstd_1_1hash_3_01fourdst_1_1atomic_1_1Species_01_4}{std\+::hash$<$ fourdst\+::atomic\+::\+Species $>$}} \\*Specialization of {\ttfamily std\+::hash} for {\ttfamily \doxylink{structfourdst_1_1atomic_1_1Species}{fourdst\+::atomic\+::\+Species}} }{\pageref{structstd_1_1hash_3_01fourdst_1_1atomic_1_1Species_01_4}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{structstd_1_1hash_3_01fourdst_1_1composition_1_1Composition_01_4}{std\+::hash$<$ fourdst\+::composition\+::\+Composition $>$}} }{\pageref{structstd_1_1hash_3_01fourdst_1_1composition_1_1Composition_01_4}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}{fourdst\+::composition\+::exceptions\+::\+Invalid\+Composition\+Error}} \\*Exception thrown when a composition is in an invalid or inconsistent state }{\pageref{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{classfourdst_1_1composition_1_1MaskedComposition}{fourdst\+::composition\+::\+Masked\+Composition}} }{\pageref{classfourdst_1_1composition_1_1MaskedComposition}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{structfourdst_1_1atomic_1_1Species}{fourdst\+::atomic\+::\+Species}} \\*Represents an atomic species (isotope) with its fundamental physical properties }{\pageref{structfourdst_1_1atomic_1_1Species}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1SpeciesError}{fourdst\+::composition\+::exceptions\+::\+Species\+Error}} \\*Base class for exceptions related to atomic species }{\pageref{classfourdst_1_1composition_1_1exceptions_1_1SpeciesError}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1UnknownSymbolError}{fourdst\+::composition\+::exceptions\+::\+Unknown\+Symbol\+Error}} \\*Exception thrown when an unknown symbol is encountered }{\pageref{classfourdst_1_1composition_1_1exceptions_1_1UnknownSymbolError}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1UnregisteredSymbolError}{fourdst\+::composition\+::exceptions\+::\+Unregistered\+Symbol\+Error}} \\*Exception thrown when a symbol is used that has not been registered }{\pageref{classfourdst_1_1composition_1_1exceptions_1_1UnregisteredSymbolError}}{}
|
||||
\end{DoxyCompactList}
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||||
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@@ -13,7 +13,8 @@
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{\ttfamily \#include "{}fourdst/atomic/species.\+h"{}}\newline
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{\ttfamily \#include "{}fourdst/composition/composition.\+h"{}}\newline
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{\ttfamily \#include "{}fourdst/composition/exceptions/exceptions\+\_\+composition.\+h"{}}\newline
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Include dependency graph for composition.\+cpp\+:\nopagebreak
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Include dependency graph for composition.\+cpp\+:
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\nopagebreak
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\begin{figure}[H]
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\begin{center}
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\leavevmode
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@@ -30,5 +31,5 @@ namespace \mbox{\hyperlink{namespacefourdst_1_1composition}{fourdst\+::compositi
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\doxysubsubsection*{Functions}
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\begin{DoxyCompactItemize}
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\item
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||||
std\+::ostream \& \mbox{\hyperlink{namespacefourdst_1_1composition_a5e8ccc2bd9e91eebcd3ef5fe470163a1}{fourdst\+::composition\+::operator$<$$<$}} (std\+::ostream \&os, const \mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}} \&composition)
|
||||
std\+::ostream \& \mbox{\hyperlink{namespacefourdst_1_1composition_a5e8ccc2bd9e91eebcd3ef5fe470163a1}{fourdst\+::composition\+::operator$<$$<$}} (std\+::ostream \&os, const \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} \&composition)
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\begin{DoxyCompactList}\small\item\em OVERLOADS. \end{DoxyCompactList}\end{DoxyCompactItemize}
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File diff suppressed because it is too large
Load Diff
@@ -4,18 +4,21 @@
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{\ttfamily \#include $<$unordered\+\_\+map$>$}\newline
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{\ttfamily \#include $<$set$>$}\newline
|
||||
{\ttfamily \#include $<$optional$>$}\newline
|
||||
{\ttfamily \#include $<$unordered\+\_\+set$>$}\newline
|
||||
{\ttfamily \#include "{}fourdst/config/config.\+h"{}}\newline
|
||||
{\ttfamily \#include "{}fourdst/logging/logging.\+h"{}}\newline
|
||||
{\ttfamily \#include "{}fourdst/composition/composition\+\_\+abstract.\+h"{}}\newline
|
||||
{\ttfamily \#include "{}fourdst/atomic/atomic\+Species.\+h"{}}\newline
|
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Include dependency graph for composition.\+h\+:\nopagebreak
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Include dependency graph for composition.\+h\+:
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\nopagebreak
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\begin{figure}[H]
|
||||
\begin{center}
|
||||
\leavevmode
|
||||
\includegraphics[width=350pt]{composition_8h__incl}
|
||||
\end{center}
|
||||
\end{figure}
|
||||
This graph shows which files directly or indirectly include this file\+:\nopagebreak
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This graph shows which files directly or indirectly include this file\+:
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\nopagebreak
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\begin{figure}[H]
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\begin{center}
|
||||
\leavevmode
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@@ -25,11 +28,11 @@ This graph shows which files directly or indirectly include this file\+:\nopageb
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\doxysubsubsection*{Classes}
|
||||
\begin{DoxyCompactItemize}
|
||||
\item
|
||||
struct \mbox{\hyperlink{structfourdst_1_1composition_1_1_canonical_composition}{fourdst\+::composition\+::\+Canonical\+Composition}}
|
||||
struct \mbox{\hyperlink{structfourdst_1_1composition_1_1CanonicalComposition}{fourdst\+::composition\+::\+Canonical\+Composition}}
|
||||
\begin{DoxyCompactList}\small\item\em Represents the canonical (X, Y, Z) composition of stellar material. \end{DoxyCompactList}\item
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{fourdst\+::composition\+::\+Composition}}
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{fourdst\+::composition\+::\+Composition}}
|
||||
\begin{DoxyCompactList}\small\item\em Manages a collection of chemical species and their abundances. \end{DoxyCompactList}\item
|
||||
struct \mbox{\hyperlink{structfourdst_1_1composition_1_1_composition_1_1_composition_cache}{fourdst\+::composition\+::\+Composition\+::\+Composition\+Cache}}
|
||||
struct \mbox{\hyperlink{structfourdst_1_1composition_1_1Composition_1_1CompositionCache}{fourdst\+::composition\+::\+Composition\+::\+Composition\+Cache}}
|
||||
\begin{DoxyCompactList}\small\item\em Caches computed properties of the composition to avoid redundant calculations. \end{DoxyCompactList}\end{DoxyCompactItemize}
|
||||
\doxysubsubsection*{Namespaces}
|
||||
\begin{DoxyCompactItemize}
|
||||
@@ -38,3 +41,8 @@ namespace \mbox{\hyperlink{namespacefourdst}{fourdst}}
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\item
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namespace \mbox{\hyperlink{namespacefourdst_1_1composition}{fourdst\+::composition}}
|
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\begin{DoxyCompactList}\small\item\em Utilities and types for representing and manipulating chemical compositions. \end{DoxyCompactList}\end{DoxyCompactItemize}
|
||||
\doxysubsubsection*{Functions}
|
||||
\begin{DoxyCompactItemize}
|
||||
\item
|
||||
bool \mbox{\hyperlink{namespacefourdst_1_1composition_a06f5abc74104de40349e47ad367c402a}{fourdst\+::composition\+::operator==}} (const \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} \&a, const \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} \&b) noexcept
|
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\end{DoxyCompactItemize}
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@@ -29,192 +29,225 @@
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\DoxyCodeLine{\Hypertarget{composition_8h_source_l00524}00524\ \ \ \ \ \ \ \ \ \textcolor{keywordtype}{void}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a262d7133035d4e6f45daa81827abf5e7}{setMolarAbundance}}(}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00525}00525\ \ \ \ \ \ \ \ \ \ \ \ \ const\ \mbox{\hyperlink{namespacestd}{std}}::set<atomic::Species>\&\ species,}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00526}00526\ \ \ \ \ \ \ \ \ \ \ \ \ const\ \mbox{\hyperlink{namespacestd}{std}}::vector<\textcolor{keywordtype}{double}>\&\ molar\_abundances}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00527}00527\ \ \ \ \ \ \ \ \ );}
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||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00528}00528\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00537}00537\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \mbox{\hyperlink{namespacestd}{std}}::set<\mbox{\hyperlink{namespacestd}{std}}::\textcolor{keywordtype}{string}>\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a3ae885c28580ae15be8c16614bef3b0e}{getRegisteredSymbols}}()\ const\ noexcept\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00538}00538\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00547}00547\ \ \ \ \ \ \ \ \ [[nodiscard]]\ const\ \mbox{\hyperlink{namespacestd}{std}}::set<atomic::Species>\ \&\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a33db253ca50431b5166d43412ff18f71}{getRegisteredSpecies}}()\ const\ noexcept\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00548}00548\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00555}00555\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \mbox{\hyperlink{namespacestd}{std}}::unordered\_map<atomic::Species,\ \textcolor{keywordtype}{double}>\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a9ea2b673341fdc67afeb0f0517a54c8c}{getMassFraction}}()\ const\ noexcept\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00556}00556\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00565}00565\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \textcolor{keywordtype}{double}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a9ea2b673341fdc67afeb0f0517a54c8c}{getMassFraction}}(const\ \mbox{\hyperlink{namespacestd}{std}}::\textcolor{keywordtype}{string}\&\ symbol)\ const\ override;}
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||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00566}00566\ }
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||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00584}00584\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \textcolor{keywordtype}{double}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a9ea2b673341fdc67afeb0f0517a54c8c}{getMassFraction}}(const\ atomic::Species\&\ species)\ const\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00585}00585\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00594}00594\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \textcolor{keywordtype}{double}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a1f87ed64a1be9a6091c852131d24e476}{getNumberFraction}}(const\ \mbox{\hyperlink{namespacestd}{std}}::\textcolor{keywordtype}{string}\&\ symbol)\ const\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00595}00595\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00612}00612\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \textcolor{keywordtype}{double}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a1f87ed64a1be9a6091c852131d24e476}{getNumberFraction}}(const\ atomic::Species\&\ species)\ const\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00613}00613\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00620}00620\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \mbox{\hyperlink{namespacestd}{std}}::unordered\_map<atomic::Species,\ \textcolor{keywordtype}{double}>\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a1f87ed64a1be9a6091c852131d24e476}{getNumberFraction}}()\ const\ noexcept\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00621}00621\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00632}00632\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \textcolor{keywordtype}{double}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_add67a92d73e3a57a2bbdb52bc9ca3bfe}{getMolarAbundance}}(const\ \mbox{\hyperlink{namespacestd}{std}}::\textcolor{keywordtype}{string}\&\ symbol)\ const\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00633}00633\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00643}00643\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \textcolor{keywordtype}{double}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_add67a92d73e3a57a2bbdb52bc9ca3bfe}{getMolarAbundance}}(const\ atomic::Species\&\ species)\ const\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00644}00644\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00658}00658\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \textcolor{keywordtype}{double}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_afbbb5e51ad5ae5c0fa6bc0094195aecd}{getMeanParticleMass}}()\ const\ noexcept\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00659}00659\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00673}00673\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \textcolor{keywordtype}{double}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a90fc71d1fe03017ee4c7a1cac69d24fb}{getElectronAbundance}}()\ const\ noexcept\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00674}00674\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00675}00675\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00690}00690\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \mbox{\hyperlink{structfourdst_1_1composition_1_1CanonicalComposition}{CanonicalComposition}}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_aac5b214a3d1278e127422224cb9cee50}{getCanonicalComposition}}()\ const;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00691}00691\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00697}00697\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \mbox{\hyperlink{namespacestd}{std}}::vector<\textcolor{keywordtype}{double}>\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_af4f44aaf8b7e0d63872a70b5e2131369}{getMassFractionVector}}()\ const\ noexcept\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00698}00698\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00704}00704\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \mbox{\hyperlink{namespacestd}{std}}::vector<\textcolor{keywordtype}{double}>\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_ae4f72972cf4d1ff422d0790080e11473}{getNumberFractionVector}}()\ const\ noexcept\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00705}00705\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00711}00711\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \mbox{\hyperlink{namespacestd}{std}}::vector<\textcolor{keywordtype}{double}>\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_abcb391f5fca2b636127e48e681e4c3ee}{getMolarAbundanceVector}}()\ const\ noexcept\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00712}00712\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00721}00721\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \textcolor{keywordtype}{size\_t}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a0d94f62402bb90b5d12679faeaa8c5d7}{getSpeciesIndex}}(const\ \mbox{\hyperlink{namespacestd}{std}}::\textcolor{keywordtype}{string}\&\ symbol)\ const\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00722}00722\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00730}00730\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \textcolor{keywordtype}{size\_t}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a0d94f62402bb90b5d12679faeaa8c5d7}{getSpeciesIndex}}(const\ atomic::Species\&\ species)\ const\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00731}00731\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00739}00739\ \ \ \ \ \ \ \ \ [[nodiscard]]\ atomic::Species\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_ae4f854ded38f5e6fcd157a74a57cbf0c}{getSpeciesAtIndex}}(\textcolor{keywordtype}{size\_t}\ index)\ const\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00740}00740\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00741}00741\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \mbox{\hyperlink{namespacestd}{std}}::unique\_ptr<\mbox{\hyperlink{classfourdst_1_1composition_1_1CompositionAbstract}{CompositionAbstract}}>\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a5a1f5661a329ec7bc8b7e118ff9d6c25}{clone}}()\ const\ override;}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00742}00742\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00749}00749\ \ \ \ \ \ \ \ \ friend\ \mbox{\hyperlink{namespacestd}{std}}::ostream\&\ operator<<(\mbox{\hyperlink{namespacestd}{std}}::ostream\&\ os,\ const\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}}\&\ composition);}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00750}00750\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00768}\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a8699ef1c21f7cf21a26ab2f83cfd9785}{00768}}\ \ \ \ \ \ \ \ \ [[nodiscard]]\ \mbox{\hyperlink{namespacestd}{std}}::map<atomic::Species,\ \textcolor{keywordtype}{double}>::iterator\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a8699ef1c21f7cf21a26ab2f83cfd9785}{begin}}()\textcolor{keyword}{\ override\ }\{}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00769}00769\ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keywordflow}{return}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_aa05a640e0ea80142682bf4ee30a93c7f}{m\_molarAbundances}}.begin();}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00770}00770\ \ \ \ \ \ \ \ \ \}}
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||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00771}00771\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00789}\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a5f6ca82e740a9297dad4bb9cc1075112}{00789}}\ \ \ \ \ \ \ \ \ [[nodiscard]]\ std::map<atomic::Species,\ double>::const\_iterator\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a5f6ca82e740a9297dad4bb9cc1075112}{begin}}()\textcolor{keyword}{\ const\ override\ }\{}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00790}00790\ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keywordflow}{return}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_aa05a640e0ea80142682bf4ee30a93c7f}{m\_molarAbundances}}.cbegin();}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00791}00791\ \ \ \ \ \ \ \ \ \}}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00792}00792\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00810}\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a8c07a604bff4963b9f8a1f11175f97cf}{00810}}\ \ \ \ \ \ \ \ \ [[nodiscard]]\ std::map<atomic::Species,\ double>::iterator\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a8c07a604bff4963b9f8a1f11175f97cf}{end}}()\textcolor{keyword}{\ override\ }\{}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00811}00811\ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keywordflow}{return}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_aa05a640e0ea80142682bf4ee30a93c7f}{m\_molarAbundances}}.end();}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00812}00812\ \ \ \ \ \ \ \ \ \}}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00813}00813\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00831}\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a12be36a912c1a1f59affba37d44431ef}{00831}}\ \ \ \ \ \ \ \ \ [[nodiscard]]\ std::map<atomic::Species,\ double>::const\_iterator\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a12be36a912c1a1f59affba37d44431ef}{end}}()\textcolor{keyword}{\ const\ override\ }\{}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00832}00832\ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keywordflow}{return}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_aa05a640e0ea80142682bf4ee30a93c7f}{m\_molarAbundances}}.cend();}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00833}00833\ \ \ \ \ \ \ \ \ \}}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00834}00834\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00835}00835\ \ \ \ \ \};}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00836}00836\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00837}\mbox{\hyperlink{namespacefourdst_1_1composition_a06f5abc74104de40349e47ad367c402a}{00837}}\ \ \ \ \ \textcolor{keyword}{inline}\ \textcolor{keywordtype}{bool}\ \mbox{\hyperlink{namespacefourdst_1_1composition_a06f5abc74104de40349e47ad367c402a}{operator==}}(\textcolor{keyword}{const}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}}\&\ a,\ \textcolor{keyword}{const}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}}\&\ b)\ \textcolor{keyword}{noexcept}\ \{}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00838}00838\ \ \ \ \ \ \ \ \ \textcolor{keywordflow}{if}\ (a.size()\ !=\ b.size())\ \textcolor{keywordflow}{return}\ \textcolor{keyword}{false};}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00839}00839\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00840}00840\ \ \ \ \ \ \ \ \ \textcolor{comment}{//\ Compare\ species\ sets\ quickly}}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00841}00841\ \ \ \ \ \ \ \ \ \textcolor{keywordflow}{if}\ (a.getRegisteredSpecies()\ !=\ b.getRegisteredSpecies())}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00842}00842\ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keywordflow}{return}\ \textcolor{keyword}{false};}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00843}00843\ }
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00844}00844\ \ \ \ \ \ \ \ \ \textcolor{comment}{//\ Compare\ all\ abundances}}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00845}00845\ \ \ \ \ \ \ \ \ \textcolor{keywordflow}{for}\ (\textcolor{keyword}{auto}\ itA\ =\ a.begin(),\ itB\ =\ b.begin();}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00846}00846\ \ \ \ \ \ \ \ \ \ \ \ \ \ itA\ !=\ a.end()\ \&\&\ itB\ !=\ b.end();\ ++itA,\ ++itB)\ \{}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00847}00847\ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keywordflow}{if}\ (itA-\/>first\ !=\ itB-\/>first)}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00848}00848\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keywordflow}{return}\ \textcolor{keyword}{false};}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00849}00849\ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keywordflow}{if}\ (itA-\/>second\ !=\ itB-\/>second)}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00850}00850\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keywordflow}{return}\ \textcolor{keyword}{false};}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00851}00851\ \ \ \ \ \ \ \ \ \ \ \ \ \ \}}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00852}00852\ \ \ \ \ \ \ \ \ \textcolor{keywordflow}{return}\ \textcolor{keyword}{true};}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00853}00853\ \ \ \ \ \}}
|
||||
\DoxyCodeLine{\Hypertarget{composition_8h_source_l00854}00854\ \};\ \textcolor{comment}{//\ namespace\ fourdst::composition}}
|
||||
|
||||
\end{DoxyCode}
|
||||
|
||||
@@ -1,10 +1,11 @@
|
||||
\doxysection{src/composition/include/fourdst Directory Reference}
|
||||
\hypertarget{dir_3c9efac6790a3720e63e1a08c00d11f2}{}\label{dir_3c9efac6790a3720e63e1a08c00d11f2}\index{src/composition/include/fourdst Directory Reference@{src/composition/include/fourdst Directory Reference}}
|
||||
Directory dependency graph for fourdst\+:\nopagebreak
|
||||
Directory dependency graph for fourdst\+:
|
||||
\nopagebreak
|
||||
\begin{figure}[H]
|
||||
\begin{center}
|
||||
\leavevmode
|
||||
\includegraphics[width=260pt]{dir_3c9efac6790a3720e63e1a08c00d11f2_dep}
|
||||
\includegraphics[width=272pt]{dir_3c9efac6790a3720e63e1a08c00d11f2_dep}
|
||||
\end{center}
|
||||
\end{figure}
|
||||
\doxysubsubsection*{Directories}
|
||||
|
||||
@@ -1,10 +1,11 @@
|
||||
\doxysection{src/composition Directory Reference}
|
||||
\hypertarget{dir_425afc2e69e55565110382214454a15b}{}\label{dir_425afc2e69e55565110382214454a15b}\index{src/composition Directory Reference@{src/composition Directory Reference}}
|
||||
Directory dependency graph for composition\+:\nopagebreak
|
||||
Directory dependency graph for composition\+:
|
||||
\nopagebreak
|
||||
\begin{figure}[H]
|
||||
\begin{center}
|
||||
\leavevmode
|
||||
\includegraphics[width=243pt]{dir_425afc2e69e55565110382214454a15b_dep}
|
||||
\includegraphics[width=250pt]{dir_425afc2e69e55565110382214454a15b_dep}
|
||||
\end{center}
|
||||
\end{figure}
|
||||
\doxysubsubsection*{Directories}
|
||||
|
||||
@@ -1,10 +1,11 @@
|
||||
\doxysection{src Directory Reference}
|
||||
\hypertarget{dir_68267d1309a1af8e8297ef4c3efbcdba}{}\label{dir_68267d1309a1af8e8297ef4c3efbcdba}\index{src Directory Reference@{src Directory Reference}}
|
||||
Directory dependency graph for src\+:\nopagebreak
|
||||
Directory dependency graph for src\+:
|
||||
\nopagebreak
|
||||
\begin{figure}[H]
|
||||
\begin{center}
|
||||
\leavevmode
|
||||
\includegraphics[width=228pt]{dir_68267d1309a1af8e8297ef4c3efbcdba_dep}
|
||||
\includegraphics[width=236pt]{dir_68267d1309a1af8e8297ef4c3efbcdba_dep}
|
||||
\end{center}
|
||||
\end{figure}
|
||||
\doxysubsubsection*{Directories}
|
||||
|
||||
@@ -1,10 +1,11 @@
|
||||
\doxysection{src/composition/include/fourdst/composition/exceptions Directory Reference}
|
||||
\hypertarget{dir_88aa30610c51652b536406602eb05405}{}\label{dir_88aa30610c51652b536406602eb05405}\index{src/composition/include/fourdst/composition/exceptions Directory Reference@{src/composition/include/fourdst/composition/exceptions Directory Reference}}
|
||||
Directory dependency graph for exceptions\+:\nopagebreak
|
||||
Directory dependency graph for exceptions\+:
|
||||
\nopagebreak
|
||||
\begin{figure}[H]
|
||||
\begin{center}
|
||||
\leavevmode
|
||||
\includegraphics[width=176pt]{dir_88aa30610c51652b536406602eb05405_dep}
|
||||
\includegraphics[width=182pt]{dir_88aa30610c51652b536406602eb05405_dep}
|
||||
\end{center}
|
||||
\end{figure}
|
||||
\doxysubsubsection*{Files}
|
||||
|
||||
@@ -1,9 +1,10 @@
|
||||
\doxysection{docs/static Directory Reference}
|
||||
\hypertarget{dir_c34d5e8363cf0aa3fabc4f3fad3412a4}{}\label{dir_c34d5e8363cf0aa3fabc4f3fad3412a4}\index{docs/static Directory Reference@{docs/static Directory Reference}}
|
||||
Directory dependency graph for static\+:\nopagebreak
|
||||
Directory dependency graph for static\+:
|
||||
\nopagebreak
|
||||
\begin{figure}[H]
|
||||
\begin{center}
|
||||
\leavevmode
|
||||
\includegraphics[width=152pt]{dir_c34d5e8363cf0aa3fabc4f3fad3412a4_dep}
|
||||
\includegraphics[width=156pt]{dir_c34d5e8363cf0aa3fabc4f3fad3412a4_dep}
|
||||
\end{center}
|
||||
\end{figure}
|
||||
|
||||
@@ -1,10 +1,11 @@
|
||||
\doxysection{src/composition/include Directory Reference}
|
||||
\hypertarget{dir_cb6fc2f7165eff3b2362b2440dfaea8e}{}\label{dir_cb6fc2f7165eff3b2362b2440dfaea8e}\index{src/composition/include Directory Reference@{src/composition/include Directory Reference}}
|
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Directory dependency graph for include\+:\nopagebreak
|
||||
Directory dependency graph for include\+:
|
||||
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||||
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||||
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|
||||
\doxysubsubsection*{Directories}
|
||||
|
||||
@@ -1,12 +1,18 @@
|
||||
\doxysection{src/composition/lib Directory Reference}
|
||||
\hypertarget{dir_e22a97de167fe22ecd13733f7a34b9f0}{}\label{dir_e22a97de167fe22ecd13733f7a34b9f0}\index{src/composition/lib Directory Reference@{src/composition/lib Directory Reference}}
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Directory dependency graph for lib\+:\nopagebreak
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Directory dependency graph for lib\+:
|
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||||
\hypertarget{dir_f0fdd83dd0cb4aa6fd6a832374ae4f05}{}\label{dir_f0fdd83dd0cb4aa6fd6a832374ae4f05}\index{src/composition/include/fourdst/composition Directory Reference@{src/composition/include/fourdst/composition Directory Reference}}
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Directory dependency graph for composition\+:\nopagebreak
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Directory dependency graph for composition\+:
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directory \mbox{\hyperlink{dir_f6270720383943883918701d7c63cf1d}{decorators}}
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directory \mbox{\hyperlink{dir_88aa30610c51652b536406602eb05405}{exceptions}}
|
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|
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directory \mbox{\hyperlink{dir_d6630bab6c58db28bc1f1c304498b57d}{utils}}
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|
||||
|
||||
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|
||||
\hypertarget{exceptions__composition_8h}{}\label{exceptions__composition_8h}\index{src/composition/include/fourdst/composition/exceptions/exceptions\_composition.h@{src/composition/include/fourdst/composition/exceptions/exceptions\_composition.h}}
|
||||
{\ttfamily \#include $<$exception$>$}\newline
|
||||
{\ttfamily \#include $<$string$>$}\newline
|
||||
Include dependency graph for exceptions\+\_\+composition.\+h\+:\nopagebreak
|
||||
Include dependency graph for exceptions\+\_\+composition.\+h\+:
|
||||
\nopagebreak
|
||||
\begin{figure}[H]
|
||||
\begin{center}
|
||||
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|
||||
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|
||||
\includegraphics[width=253pt]{exceptions__composition_8h__incl}
|
||||
\end{center}
|
||||
\end{figure}
|
||||
This graph shows which files directly or indirectly include this file\+:\nopagebreak
|
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This graph shows which files directly or indirectly include this file\+:
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|
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|
||||
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|
||||
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|
||||
\doxysubsubsection*{Classes}
|
||||
\begin{DoxyCompactItemize}
|
||||
\item
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_composition_error}{fourdst\+::composition\+::exceptions\+::\+Composition\+Error}}
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1CompositionError}{fourdst\+::composition\+::exceptions\+::\+Composition\+Error}}
|
||||
\begin{DoxyCompactList}\small\item\em Base class for exceptions related to composition objects. \end{DoxyCompactList}\item
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_invalid_composition_error}{fourdst\+::composition\+::exceptions\+::\+Invalid\+Composition\+Error}}
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}{fourdst\+::composition\+::exceptions\+::\+Invalid\+Composition\+Error}}
|
||||
\begin{DoxyCompactList}\small\item\em Exception thrown when a composition is in an invalid or inconsistent state. \end{DoxyCompactList}\item
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_unregistered_symbol_error}{fourdst\+::composition\+::exceptions\+::\+Unregistered\+Symbol\+Error}}
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1UnregisteredSymbolError}{fourdst\+::composition\+::exceptions\+::\+Unregistered\+Symbol\+Error}}
|
||||
\begin{DoxyCompactList}\small\item\em Exception thrown when a symbol is used that has not been registered. \end{DoxyCompactList}\item
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_species_error}{fourdst\+::composition\+::exceptions\+::\+Species\+Error}}
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1SpeciesError}{fourdst\+::composition\+::exceptions\+::\+Species\+Error}}
|
||||
\begin{DoxyCompactList}\small\item\em Base class for exceptions related to atomic species. \end{DoxyCompactList}\item
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_unknown_symbol_error}{fourdst\+::composition\+::exceptions\+::\+Unknown\+Symbol\+Error}}
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1UnknownSymbolError}{fourdst\+::composition\+::exceptions\+::\+Unknown\+Symbol\+Error}}
|
||||
\begin{DoxyCompactList}\small\item\em Exception thrown when an unknown symbol is encountered. \end{DoxyCompactList}\end{DoxyCompactItemize}
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\DoxyCodeLine{\Hypertarget{exceptions__composition_8h_source_l00064}00064\ \ \ \ \ \ \ \ \ \ \ \ \ :\ \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_species_error_a07a424e42edd368e6fb5113655ab6d1e}{m\_message}}(std::move(message))\ \{\}}
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\DoxyCodeLine{\Hypertarget{exceptions__composition_8h_source_l00064}00064\ \ \ \ \ \ \ \ \ \ \ \ \ :\ \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1SpeciesError_a07a424e42edd368e6fb5113655ab6d1e}{m\_message}}(\mbox{\hyperlink{namespacestd}{std}}::move(message))\ \{\}}
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\DoxyCodeLine{\Hypertarget{exceptions__composition_8h_source_l00067}00067\ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keywordflow}{return}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_species_error_a07a424e42edd368e6fb5113655ab6d1e}{m\_message}}.c\_str();}
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\DoxyCodeLine{\Hypertarget{exceptions__composition_8h_source_l00067}00067\ \ \ \ \ \ \ \ \ \ \ \ \ \textcolor{keywordflow}{return}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1SpeciesError_a07a424e42edd368e6fb5113655ab6d1e}{m\_message}}.c\_str();}
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\DoxyCodeLine{\Hypertarget{exceptions__composition_8h_source_l00077}\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_unknown_symbol_error}{00077}}\ \ \ \ \ \textcolor{keyword}{class\ }\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_unknown_symbol_error}{UnknownSymbolError}}\ final\ :\ \textcolor{keyword}{public}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_unknown_symbol_error_af67ed95557b2511ff5143c7064fc5813}{SpeciesError}}\ \{}
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\DoxyCodeLine{\Hypertarget{exceptions__composition_8h_source_l00078}00078\ \ \ \ \ \ \ \ \ \textcolor{keyword}{using\ }\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_species_error_af67ed95557b2511ff5143c7064fc5813}{SpeciesError::SpeciesError}};}
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\DoxyCodeLine{\Hypertarget{exceptions__composition_8h_source_l00077}\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1UnknownSymbolError}{00077}}\ \ \ \ \ \textcolor{keyword}{class\ }\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1UnknownSymbolError}{UnknownSymbolError}}\ final\ :\ \textcolor{keyword}{public}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1SpeciesError}{SpeciesError}}\ \{}
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\DoxyCodeLine{\Hypertarget{exceptions__composition_8h_source_l00078}00078\ \ \ \ \ \ \ \ \ \textcolor{keyword}{using\ }\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1SpeciesError_af67ed95557b2511ff5143c7064fc5813}{SpeciesError::SpeciesError}};}
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||||
\DoxyCodeLine{\Hypertarget{exceptions__composition_8h_source_l00079}00079\ \ \ \ \ \};}
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||||
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|
||||
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|
||||
|
||||
@@ -1,12 +1,16 @@
|
||||
\doxysection{File List}
|
||||
Here is a list of all files with brief descriptions\+:\begin{DoxyCompactList}
|
||||
\item\contentsline{section}{src/composition/include/fourdst/atomic/\mbox{\hyperlink{atomic_species_8h}{atomic\+Species.\+h}} }{\pageref{atomic_species_8h}}{}
|
||||
\item\contentsline{section}{src/composition/include/fourdst/atomic/\mbox{\hyperlink{atomicSpecies_8h}{atomic\+Species.\+h}} }{\pageref{atomicSpecies_8h}}{}
|
||||
\item\contentsline{section}{src/composition/include/fourdst/atomic/\mbox{\hyperlink{elements_8h}{elements.\+h}} \\*Provides mappings between atomic numbers and element symbols for the periodic table }{\pageref{elements_8h}}{}
|
||||
\item\contentsline{section}{src/composition/include/fourdst/atomic/\mbox{\hyperlink{species_8h}{species.\+h}} }{\pageref{species_8h}}{}
|
||||
\item\contentsline{section}{src/composition/include/fourdst/composition/\mbox{\hyperlink{composition_8h}{composition.\+h}} }{\pageref{composition_8h}}{}
|
||||
\item\contentsline{section}{src/composition/include/fourdst/composition/\mbox{\hyperlink{composition__abstract_8h}{composition\+\_\+abstract.\+h}} }{\pageref{composition__abstract_8h}}{}
|
||||
\item\contentsline{section}{src/composition/include/fourdst/composition/\mbox{\hyperlink{utils_8h}{utils.\+h}} }{\pageref{utils_8h}}{}
|
||||
\item\contentsline{section}{src/composition/include/fourdst/composition/decorators/\mbox{\hyperlink{composition__decorator__abstract_8h}{composition\+\_\+decorator\+\_\+abstract.\+h}} }{\pageref{composition__decorator__abstract_8h}}{}
|
||||
\item\contentsline{section}{src/composition/include/fourdst/composition/decorators/\mbox{\hyperlink{composition__masked_8h}{composition\+\_\+masked.\+h}} }{\pageref{composition__masked_8h}}{}
|
||||
\item\contentsline{section}{src/composition/include/fourdst/composition/exceptions/\mbox{\hyperlink{exceptions__composition_8h}{exceptions\+\_\+composition.\+h}} }{\pageref{exceptions__composition_8h}}{}
|
||||
\item\contentsline{section}{src/composition/include/fourdst/composition/utils/\mbox{\hyperlink{composition__hash_8h}{composition\+\_\+hash.\+h}} }{\pageref{composition__hash_8h}}{}
|
||||
\item\contentsline{section}{src/composition/lib/\mbox{\hyperlink{composition_8cpp}{composition.\+cpp}} }{\pageref{composition_8cpp}}{}
|
||||
\item\contentsline{section}{src/composition/lib/\mbox{\hyperlink{utils_8cpp}{utils.\+cpp}} }{\pageref{utils_8cpp}}{}
|
||||
\item\contentsline{section}{src/composition/lib/decorators/\mbox{\hyperlink{composition__masked_8cpp}{composition\+\_\+masked.\+cpp}} }{\pageref{composition__masked_8cpp}}{}
|
||||
\end{DoxyCompactList}
|
||||
|
||||
@@ -1,22 +1,28 @@
|
||||
\doxysection{Class Hierarchy}
|
||||
This inheritance list is sorted roughly, but not completely, alphabetically\+:\begin{DoxyCompactList}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::Canonical\+Composition}{\pageref{structfourdst_1_1composition_1_1_canonical_composition}}{}
|
||||
\item \contentsline{section}{Composition\+Abstract}{\pageref{class_composition_abstract}}{}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::Canonical\+Composition}{\pageref{structfourdst_1_1composition_1_1CanonicalComposition}}{}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::Composition\+Abstract}{\pageref{classfourdst_1_1composition_1_1CompositionAbstract}}{}
|
||||
\begin{DoxyCompactList}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::Composition}{\pageref{classfourdst_1_1composition_1_1_composition}}{}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::Composition}{\pageref{classfourdst_1_1composition_1_1Composition}}{}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::Composition\+Decorator}{\pageref{classfourdst_1_1composition_1_1CompositionDecorator}}{}
|
||||
\begin{DoxyCompactList}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::Masked\+Composition}{\pageref{classfourdst_1_1composition_1_1MaskedComposition}}{}
|
||||
\end{DoxyCompactList}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::Composition\+::Composition\+Cache}{\pageref{structfourdst_1_1composition_1_1_composition_1_1_composition_cache}}{}
|
||||
\end{DoxyCompactList}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::Composition\+::Composition\+Cache}{\pageref{structfourdst_1_1composition_1_1Composition_1_1CompositionCache}}{}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::utils\+::Composition\+Hash}{\pageref{structfourdst_1_1composition_1_1utils_1_1CompositionHash}}{}
|
||||
\item std\+::exception\begin{DoxyCompactList}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::exceptions\+::Composition\+Error}{\pageref{classfourdst_1_1composition_1_1exceptions_1_1_composition_error}}{}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::exceptions\+::Composition\+Error}{\pageref{classfourdst_1_1composition_1_1exceptions_1_1CompositionError}}{}
|
||||
\begin{DoxyCompactList}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::exceptions\+::Invalid\+Composition\+Error}{\pageref{classfourdst_1_1composition_1_1exceptions_1_1_invalid_composition_error}}{}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::exceptions\+::Unregistered\+Symbol\+Error}{\pageref{classfourdst_1_1composition_1_1exceptions_1_1_unregistered_symbol_error}}{}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::exceptions\+::Invalid\+Composition\+Error}{\pageref{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}}{}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::exceptions\+::Unregistered\+Symbol\+Error}{\pageref{classfourdst_1_1composition_1_1exceptions_1_1UnregisteredSymbolError}}{}
|
||||
\end{DoxyCompactList}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::exceptions\+::Species\+Error}{\pageref{classfourdst_1_1composition_1_1exceptions_1_1_species_error}}{}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::exceptions\+::Species\+Error}{\pageref{classfourdst_1_1composition_1_1exceptions_1_1SpeciesError}}{}
|
||||
\begin{DoxyCompactList}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::exceptions\+::Unknown\+Symbol\+Error}{\pageref{classfourdst_1_1composition_1_1exceptions_1_1_unknown_symbol_error}}{}
|
||||
\item \contentsline{section}{fourdst\+::composition\+::exceptions\+::Unknown\+Symbol\+Error}{\pageref{classfourdst_1_1composition_1_1exceptions_1_1UnknownSymbolError}}{}
|
||||
\end{DoxyCompactList}
|
||||
\end{DoxyCompactList}
|
||||
\item \contentsline{section}{std\+::hash\texorpdfstring{$<$}{<} fourdst\+::atomic\+::Species \texorpdfstring{$>$}{>}}{\pageref{structstd_1_1hash_3_01fourdst_1_1atomic_1_1_species_01_4}}{}
|
||||
\item \contentsline{section}{fourdst\+::atomic\+::Species}{\pageref{structfourdst_1_1atomic_1_1_species}}{}
|
||||
\item \contentsline{section}{std\+::hash\texorpdfstring{$<$}{<} fourdst\+::atomic\+::Species \texorpdfstring{$>$}{>}}{\pageref{structstd_1_1hash_3_01fourdst_1_1atomic_1_1Species_01_4}}{}
|
||||
\item \contentsline{section}{std\+::hash\texorpdfstring{$<$}{<} fourdst\+::composition\+::Composition \texorpdfstring{$>$}{>}}{\pageref{structstd_1_1hash_3_01fourdst_1_1composition_1_1Composition_01_4}}{}
|
||||
\item \contentsline{section}{fourdst\+::atomic\+::Species}{\pageref{structfourdst_1_1atomic_1_1Species}}{}
|
||||
\end{DoxyCompactList}
|
||||
|
||||
@@ -4,7 +4,7 @@
|
||||
{\ttfamily libcomposition} is a modern, C++23 library, for the creation, manipulation, and analysis of astrophysical chemical compositions. It provides a robust and type‑safe interface for assembling a set of isotopes together with their molar abundances and for deriving commonly used bulk properties (mass fractions, number fractions, canonical X/\+Y/Z, mean particle mass, and electron abundance). {\ttfamily libcomposition} is designed to be tighly integrated into SERiF and related projects such as Grid\+Fire.\hypertarget{index_autotoc_md10}{}\doxysubsubsection{\texorpdfstring{Key Features}{Key Features}}\label{index_autotoc_md10}
|
||||
|
||||
\begin{DoxyItemize}
|
||||
\item {\bfseries{Type–\+Safe Species Representation}}\+: Strongly typed isotopes ({\ttfamily \doxylink{structfourdst_1_1atomic_1_1_species}{fourdst\+::atomic\+::\+Species}}) generated from evaluated nuclear data (AME2020 / NUBASE2020).
|
||||
\item {\bfseries{Type–\+Safe Species Representation}}\+: Strongly typed isotopes ({\ttfamily \doxylink{structfourdst_1_1atomic_1_1Species}{fourdst\+::atomic\+::\+Species}}) generated from evaluated nuclear data (AME2020 / NUBASE2020).
|
||||
\item {\bfseries{Molar Abundance Core}}\+: Stores absolute molar abundances and derives all secondary quantities (mass / number fractions, mean particle mass, electron abundance) on demand, with internal caching.
|
||||
\item {\bfseries{Canonical Composition Support}}\+: Direct computation of canonical (X\+: Hydrogen, Y\+: Helium, Z\+: Metals) mass fractions via {\ttfamily get\+Canonical\+Composition()}.
|
||||
\item {\bfseries{Convenience Construction}}\+: Helper utilities for constructing compositions from a vector or set of mass fractions ({\ttfamily build\+Composition\+From\+Mass\+Fractions}).
|
||||
@@ -60,7 +60,7 @@ You can enable the generation of a {\ttfamily pkg-\/config} file during the setu
|
||||
|
||||
\DoxyHorRuler{0}
|
||||
\hypertarget{index_usage_sec}{}\doxysection{\texorpdfstring{Usage}{Usage}}\label{index_usage_sec}
|
||||
Below are focused examples illustrating the current API. All examples assume headers are available via pkg-\/config or your include path.\hypertarget{index_autotoc_md15}{}\doxysubsubsubsection{\texorpdfstring{1. Constructing a Composition from Symbols}{1. Constructing a Composition from Symbols}}\label{index_autotoc_md15}
|
||||
Below are focused examples illustrating the current API. All examples assume headers are available via pkg-\/config or your include path.\hypertarget{index_autotoc_md15}{}\doxyparagraph{\texorpdfstring{1. Constructing a Composition from Symbols}{1. Constructing a Composition from Symbols}}\label{index_autotoc_md15}
|
||||
|
||||
\begin{DoxyCode}{0}
|
||||
\DoxyCodeLine{\textcolor{preprocessor}{\#include\ <iostream>}}
|
||||
@@ -70,10 +70,10 @@ Below are focused examples illustrating the current API. All examples assume hea
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keyword}{using\ namespace\ }\mbox{\hyperlink{namespacefourdst_1_1composition}{fourdst::composition}};}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{comment}{//\ Register\ symbols\ upon\ construction\ (no\ molar\ abundances\ yet\ -\/>\ default\ 0.0)}}
|
||||
\DoxyCodeLine{\ \ \ \ \mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}}\ comp(\{\textcolor{stringliteral}{"{}H-\/1"{}},\ \textcolor{stringliteral}{"{}He-\/4"{}},\ \textcolor{stringliteral}{"{}C-\/12"{}}\});}
|
||||
\DoxyCodeLine{\ \ \ \ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}}\ comp(\{\textcolor{stringliteral}{"{}H-\/1"{}},\ \textcolor{stringliteral}{"{}He-\/4"{}},\ \textcolor{stringliteral}{"{}C-\/12"{}}\});}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{comment}{//\ Set\ molar\ abundances\ (absolute\ counts;\ they\ need\ not\ sum\ to\ 1.0)}}
|
||||
\DoxyCodeLine{\ \ \ \ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition_a262d7133035d4e6f45daa81827abf5e7}{setMolarAbundance}}(\textcolor{stringliteral}{"{}H-\/1"{}},\ 10.0);}
|
||||
\DoxyCodeLine{\ \ \ \ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a262d7133035d4e6f45daa81827abf5e7}{setMolarAbundance}}(\textcolor{stringliteral}{"{}H-\/1"{}},\ 10.0);}
|
||||
\DoxyCodeLine{\ \ \ \ comp.setMolarAbundance(\textcolor{stringliteral}{"{}He-\/4"{}},\ 3.0);}
|
||||
\DoxyCodeLine{\ \ \ \ comp.setMolarAbundance(\textcolor{stringliteral}{"{}C-\/12"{}},\ 0.25);}
|
||||
\DoxyCodeLine{}
|
||||
@@ -88,7 +88,7 @@ Below are focused examples illustrating the current API. All examples assume hea
|
||||
\DoxyCodeLine{\}}
|
||||
|
||||
\end{DoxyCode}
|
||||
\hypertarget{index_autotoc_md16}{}\doxysubsubsubsection{\texorpdfstring{2. Constructing from Strongly Typed Species}{2. Constructing from Strongly Typed Species}}\label{index_autotoc_md16}
|
||||
\hypertarget{index_autotoc_md16}{}\doxyparagraph{\texorpdfstring{2. Constructing from Strongly Typed Species}{2. Constructing from Strongly Typed Species}}\label{index_autotoc_md16}
|
||||
|
||||
\begin{DoxyCode}{0}
|
||||
\DoxyCodeLine{\textcolor{preprocessor}{\#include\ <iostream>}}
|
||||
@@ -100,18 +100,18 @@ Below are focused examples illustrating the current API. All examples assume hea
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keyword}{using\ namespace\ }\mbox{\hyperlink{namespacefourdst_1_1atomic}{fourdst::atomic}};}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{comment}{//\ Build\ directly\ from\ species\ constants}}
|
||||
\DoxyCodeLine{\ \ \ \ \mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}}\ comp(std::vector<Species>\{\mbox{\hyperlink{namespacefourdst_1_1atomic_a6766bc834fd656df51bdcf22f7d97877}{H\_1}},\ \mbox{\hyperlink{namespacefourdst_1_1atomic_ab665e3014e2a805624227350699f141a}{He\_4}},\ \mbox{\hyperlink{namespacefourdst_1_1atomic_af2588b97ce949e37c193d6a3e5cb84a0}{O\_16}}\});}
|
||||
\DoxyCodeLine{\ \ \ \ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}}\ comp(std::vector<Species>\{H\_1,\ He\_4,\ O\_16\});}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\ \ \ \ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition_a262d7133035d4e6f45daa81827abf5e7}{setMolarAbundance}}(\mbox{\hyperlink{namespacefourdst_1_1atomic_a6766bc834fd656df51bdcf22f7d97877}{H\_1}},\ 5.0);}
|
||||
\DoxyCodeLine{\ \ \ \ comp.setMolarAbundance(\mbox{\hyperlink{namespacefourdst_1_1atomic_ab665e3014e2a805624227350699f141a}{He\_4}},\ 2.5);}
|
||||
\DoxyCodeLine{\ \ \ \ comp.setMolarAbundance(\mbox{\hyperlink{namespacefourdst_1_1atomic_af2588b97ce949e37c193d6a3e5cb84a0}{O\_16}},\ 0.1);}
|
||||
\DoxyCodeLine{\ \ \ \ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a262d7133035d4e6f45daa81827abf5e7}{setMolarAbundance}}(H\_1,\ 5.0);}
|
||||
\DoxyCodeLine{\ \ \ \ comp.setMolarAbundance(He\_4,\ 2.5);}
|
||||
\DoxyCodeLine{\ \ \ \ comp.setMolarAbundance(O\_16,\ 0.1);}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\ \ \ \ std::cout\ <<\ \textcolor{stringliteral}{"{}Mean\ particle\ mass:\ "{}}\ <<\ comp.getMeanParticleMass()\ <<\ \textcolor{stringliteral}{"{}\ g/mol\(\backslash\)n"{}};}
|
||||
\DoxyCodeLine{\ \ \ \ std::cout\ <<\ \textcolor{stringliteral}{"{}Electron\ abundance\ (Ye):\ "{}}\ <<\ comp.getElectronAbundance()\ <<\ \textcolor{stringliteral}{"{}\(\backslash\)n"{}};}
|
||||
\DoxyCodeLine{\}}
|
||||
|
||||
\end{DoxyCode}
|
||||
\hypertarget{index_autotoc_md17}{}\doxysubsubsubsection{\texorpdfstring{3. Building from Mass Fractions (Helper Utility)}{3. Building from Mass Fractions (Helper Utility)}}\label{index_autotoc_md17}
|
||||
\hypertarget{index_autotoc_md17}{}\doxyparagraph{\texorpdfstring{3. Building from Mass Fractions (\+Helper Utility)}{3. Building from Mass Fractions (Helper Utility)}}\label{index_autotoc_md17}
|
||||
|
||||
\begin{DoxyCode}{0}
|
||||
\DoxyCodeLine{\textcolor{preprocessor}{\#include\ <iostream>}}
|
||||
@@ -123,14 +123,14 @@ Below are focused examples illustrating the current API. All examples assume hea
|
||||
\DoxyCodeLine{\ \ \ \ std::vector<std::string>\ symbols\ =\ \{\textcolor{stringliteral}{"{}H-\/1"{}},\ \textcolor{stringliteral}{"{}He-\/4"{}},\ \textcolor{stringliteral}{"{}C-\/12"{}}\};}
|
||||
\DoxyCodeLine{\ \ \ \ std::vector<double>\ mf\ \ \ \ \ \ \ =\ \{0.70,\ 0.28,\ 0.02\};\ \textcolor{comment}{//\ Must\ sum\ to\ \string~1\ within\ tolerance}}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\ \ \ \ \mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}}\ comp\ =\ \mbox{\hyperlink{namespacefourdst_1_1composition_aa90b1ef07d607c0c829bedccf381cf54}{buildCompositionFromMassFractions}}(symbols,\ mf);}
|
||||
\DoxyCodeLine{\ \ \ \ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}}\ comp\ =\ \mbox{\hyperlink{namespacefourdst_1_1composition_aa90b1ef07d607c0c829bedccf381cf54}{buildCompositionFromMassFractions}}(symbols,\ mf);}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keyword}{auto}\ canon\ =\ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition_aac5b214a3d1278e127422224cb9cee50}{getCanonicalComposition}}();}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keyword}{auto}\ canon\ =\ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_aac5b214a3d1278e127422224cb9cee50}{getCanonicalComposition}}();}
|
||||
\DoxyCodeLine{\ \ \ \ std::cout\ <<\ canon\ <<\ \textcolor{stringliteral}{"{}\(\backslash\)n"{}};}
|
||||
\DoxyCodeLine{\}}
|
||||
|
||||
\end{DoxyCode}
|
||||
\hypertarget{index_autotoc_md18}{}\doxysubsubsubsection{\texorpdfstring{4. Iterating and Sorted Vector Interfaces}{4. Iterating and Sorted Vector Interfaces}}\label{index_autotoc_md18}
|
||||
\hypertarget{index_autotoc_md18}{}\doxyparagraph{\texorpdfstring{4. Iterating and Sorted Vector Interfaces}{4. Iterating and Sorted Vector Interfaces}}\label{index_autotoc_md18}
|
||||
|
||||
\begin{DoxyCode}{0}
|
||||
\DoxyCodeLine{\textcolor{preprocessor}{\#include\ <iostream>}}
|
||||
@@ -139,8 +139,8 @@ Below are focused examples illustrating the current API. All examples assume hea
|
||||
\DoxyCodeLine{\textcolor{keywordtype}{int}\ main()\ \{}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keyword}{using\ namespace\ }\mbox{\hyperlink{namespacefourdst_1_1composition}{fourdst::composition}};}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\ \ \ \ \mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}}\ comp(\{\textcolor{stringliteral}{"{}H-\/1"{}},\ \textcolor{stringliteral}{"{}C-\/12"{}},\ \textcolor{stringliteral}{"{}He-\/4"{}}\});\ \textcolor{comment}{//\ Internally\ sorted\ by\ mass\ (H\ <\ He\ <\ C)}}
|
||||
\DoxyCodeLine{\ \ \ \ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition_a262d7133035d4e6f45daa81827abf5e7}{setMolarAbundance}}(\{\textcolor{stringliteral}{"{}H-\/1"{}},\ \textcolor{stringliteral}{"{}He-\/4"{}},\ \textcolor{stringliteral}{"{}C-\/12"{}}\},\ \{10.0,\ 3.0,\ 0.25\});}
|
||||
\DoxyCodeLine{\ \ \ \ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}}\ comp(\{\textcolor{stringliteral}{"{}H-\/1"{}},\ \textcolor{stringliteral}{"{}C-\/12"{}},\ \textcolor{stringliteral}{"{}He-\/4"{}}\});\ \textcolor{comment}{//\ Internally\ sorted\ by\ mass\ (H\ <\ He\ <\ C)}}
|
||||
\DoxyCodeLine{\ \ \ \ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a262d7133035d4e6f45daa81827abf5e7}{setMolarAbundance}}(\{\textcolor{stringliteral}{"{}H-\/1"{}},\ \textcolor{stringliteral}{"{}He-\/4"{}},\ \textcolor{stringliteral}{"{}C-\/12"{}}\},\ \{10.0,\ 3.0,\ 0.25\});}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{comment}{//\ Ordered\ iteration\ (lightest\ -\/>\ heaviest)}}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keywordflow}{for}\ (\textcolor{keyword}{const}\ \textcolor{keyword}{auto}\ \&[sp,\ y]\ :\ comp)\ \{}
|
||||
@@ -148,28 +148,28 @@ Below are focused examples illustrating the current API. All examples assume hea
|
||||
\DoxyCodeLine{\ \ \ \ \}}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{comment}{//\ Vector\ access\ (index\ corresponds\ to\ ordering\ by\ atomic\ mass)}}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keyword}{auto}\ molarVec\ =\ comp.getMolarAbundanceVector();}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keyword}{auto}\ massVec\ \ =\ comp.getMassFractionVector();}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keyword}{auto}\ molarVec\ =\ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_abcb391f5fca2b636127e48e681e4c3ee}{getMolarAbundanceVector}}();}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keyword}{auto}\ massVec\ \ =\ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_af4f44aaf8b7e0d63872a70b5e2131369}{getMassFractionVector}}();}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keywordtype}{size\_t}\ idx\_he4\ =\ comp.getSpeciesIndex(\textcolor{stringliteral}{"{}He-\/4"{}});}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keywordtype}{size\_t}\ idx\_he4\ =\ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a0d94f62402bb90b5d12679faeaa8c5d7}{getSpeciesIndex}}(\textcolor{stringliteral}{"{}He-\/4"{}});}
|
||||
\DoxyCodeLine{\ \ \ \ std::cout\ <<\ \textcolor{stringliteral}{"{}He-\/4\ index:\ "{}}\ <<\ idx\_he4\ <<\ \textcolor{stringliteral}{"{},\ molar\ abundance\ at\ index:\ "{}}\ <<\ molarVec[idx\_he4]\ <<\ \textcolor{stringliteral}{"{}\(\backslash\)n"{}};}
|
||||
\DoxyCodeLine{\}}
|
||||
|
||||
\end{DoxyCode}
|
||||
\hypertarget{index_autotoc_md19}{}\doxysubsubsubsection{\texorpdfstring{5. Accessing Specific Derived Quantities}{5. Accessing Specific Derived Quantities}}\label{index_autotoc_md19}
|
||||
\hypertarget{index_autotoc_md19}{}\doxyparagraph{\texorpdfstring{5. Accessing Specific Derived Quantities}{5. Accessing Specific Derived Quantities}}\label{index_autotoc_md19}
|
||||
|
||||
\begin{DoxyCode}{0}
|
||||
\DoxyCodeLine{\textcolor{comment}{//\ Assume\ 'comp'\ is\ already\ populated.}}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\textcolor{keywordtype}{double}\ mf\_c12\ \ \ =\ comp.getMassFraction(\textcolor{stringliteral}{"{}C-\/12"{}});}
|
||||
\DoxyCodeLine{\textcolor{keywordtype}{double}\ nf\_c12\ \ \ =\ comp.getNumberFraction(\textcolor{stringliteral}{"{}C-\/12"{}});}
|
||||
\DoxyCodeLine{\textcolor{keywordtype}{double}\ mol\_c12\ \ =\ comp.getMolarAbundance(\textcolor{stringliteral}{"{}C-\/12"{}});}
|
||||
\DoxyCodeLine{\textcolor{keywordtype}{double}\ meanA\ \ \ \ =\ comp.getMeanParticleMass();}
|
||||
\DoxyCodeLine{\textcolor{keywordtype}{double}\ Ye\ \ \ \ \ \ \ =\ comp.getElectronAbundance();}
|
||||
\DoxyCodeLine{\textcolor{keyword}{auto}\ \ \ canon\ \ \ \ =\ comp.getCanonicalComposition();}
|
||||
\DoxyCodeLine{\textcolor{keywordtype}{double}\ mf\_c12\ \ \ =\ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a9ea2b673341fdc67afeb0f0517a54c8c}{getMassFraction}}(\textcolor{stringliteral}{"{}C-\/12"{}});}
|
||||
\DoxyCodeLine{\textcolor{keywordtype}{double}\ nf\_c12\ \ \ =\ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a34f71d4d8f0297c576fd62fabd490305}{getNumberFraction}}(\textcolor{stringliteral}{"{}C-\/12"{}});}
|
||||
\DoxyCodeLine{\textcolor{keywordtype}{double}\ mol\_c12\ \ =\ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_add67a92d73e3a57a2bbdb52bc9ca3bfe}{getMolarAbundance}}(\textcolor{stringliteral}{"{}C-\/12"{}});}
|
||||
\DoxyCodeLine{\textcolor{keywordtype}{double}\ meanA\ \ \ \ =\ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_afbbb5e51ad5ae5c0fa6bc0094195aecd}{getMeanParticleMass}}();}
|
||||
\DoxyCodeLine{\textcolor{keywordtype}{double}\ Ye\ \ \ \ \ \ \ =\ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a90fc71d1fe03017ee4c7a1cac69d24fb}{getElectronAbundance}}();}
|
||||
\DoxyCodeLine{\textcolor{keyword}{auto}\ \ \ canon\ \ \ \ =\ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_aac5b214a3d1278e127422224cb9cee50}{getCanonicalComposition}}();}
|
||||
|
||||
\end{DoxyCode}
|
||||
\hypertarget{index_autotoc_md20}{}\doxysubsubsubsection{\texorpdfstring{6. Exception Handling Examples}{6. Exception Handling Examples}}\label{index_autotoc_md20}
|
||||
\hypertarget{index_autotoc_md20}{}\doxyparagraph{\texorpdfstring{6. Exception Handling Examples}{6. Exception Handling Examples}}\label{index_autotoc_md20}
|
||||
|
||||
\begin{DoxyCode}{0}
|
||||
\DoxyCodeLine{\textcolor{preprocessor}{\#include\ <iostream>}}
|
||||
@@ -180,35 +180,35 @@ Below are focused examples illustrating the current API. All examples assume hea
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keyword}{using\ namespace\ }\mbox{\hyperlink{namespacefourdst_1_1composition}{fourdst::composition}};}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keyword}{using\ namespace\ }\mbox{\hyperlink{namespacefourdst_1_1composition_1_1exceptions}{fourdst::composition::exceptions}};}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\ \ \ \ \mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}}\ comp;}
|
||||
\DoxyCodeLine{\ \ \ \ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}}\ comp;}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keywordflow}{try}\ \{}
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ \textcolor{comment}{//\ Unknown\ symbol\ (not\ in\ species\ database)}}
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition_a3ab4dcda0bfd1a35b169bcc57fe66725}{registerSymbol}}(\textcolor{stringliteral}{"{}Xx-\/999"{}});}
|
||||
\DoxyCodeLine{\ \ \ \ \}\ \textcolor{keywordflow}{catch}\ (\textcolor{keyword}{const}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_unknown_symbol_error}{UnknownSymbolError}}\ \&e)\ \{}
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ std::cerr\ <<\ \textcolor{stringliteral}{"{}Caught\ UnknownSymbolError:\ "{}}\ <<\ e.\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_species_error_af0c63f7e05d0c65157b960c654d09b67}{what}}()\ <<\ \textcolor{stringliteral}{"{}\(\backslash\)n"{}};}
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a3ab4dcda0bfd1a35b169bcc57fe66725}{registerSymbol}}(\textcolor{stringliteral}{"{}Xx-\/999"{}});}
|
||||
\DoxyCodeLine{\ \ \ \ \}\ \textcolor{keywordflow}{catch}\ (\textcolor{keyword}{const}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1UnknownSymbolError}{UnknownSymbolError}}\ \&e)\ \{}
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ std::cerr\ <<\ \textcolor{stringliteral}{"{}Caught\ UnknownSymbolError:\ "{}}\ <<\ e.\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1SpeciesError_af0c63f7e05d0c65157b960c654d09b67}{what}}()\ <<\ \textcolor{stringliteral}{"{}\(\backslash\)n"{}};}
|
||||
\DoxyCodeLine{\ \ \ \ \}}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\ \ \ \ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition_a3ab4dcda0bfd1a35b169bcc57fe66725}{registerSymbol}}(\textcolor{stringliteral}{"{}H-\/1"{}});}
|
||||
\DoxyCodeLine{\ \ \ \ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a3ab4dcda0bfd1a35b169bcc57fe66725}{registerSymbol}}(\textcolor{stringliteral}{"{}H-\/1"{}});}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keywordflow}{try}\ \{}
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ \textcolor{comment}{//\ Unregistered\ symbol\ used\ in\ a\ setter}}
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition_a262d7133035d4e6f45daa81827abf5e7}{setMolarAbundance}}(\textcolor{stringliteral}{"{}He-\/4"{}},\ 1.0);\ \textcolor{comment}{//\ He-\/4\ not\ registered\ yet}}
|
||||
\DoxyCodeLine{\ \ \ \ \}\ \textcolor{keywordflow}{catch}\ (\textcolor{keyword}{const}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_unregistered_symbol_error}{UnregisteredSymbolError}}\ \&e)\ \{}
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ std::cerr\ <<\ \textcolor{stringliteral}{"{}Caught\ UnregisteredSymbolError:\ "{}}\ <<\ e.\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_composition_error_ae44ceddb19da8a8cda7ee150b6826d08}{what}}()\ <<\ \textcolor{stringliteral}{"{}\(\backslash\)n"{}};}
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a262d7133035d4e6f45daa81827abf5e7}{setMolarAbundance}}(\textcolor{stringliteral}{"{}He-\/4"{}},\ 1.0);\ \textcolor{comment}{//\ He-\/4\ not\ registered\ yet}}
|
||||
\DoxyCodeLine{\ \ \ \ \}\ \textcolor{keywordflow}{catch}\ (\textcolor{keyword}{const}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1UnregisteredSymbolError}{UnregisteredSymbolError}}\ \&e)\ \{}
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ std::cerr\ <<\ \textcolor{stringliteral}{"{}Caught\ UnregisteredSymbolError:\ "{}}\ <<\ e.\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1CompositionError_ae44ceddb19da8a8cda7ee150b6826d08}{what}}()\ <<\ \textcolor{stringliteral}{"{}\(\backslash\)n"{}};}
|
||||
\DoxyCodeLine{\ \ \ \ \}}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\ \ \ \ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition_a3ab4dcda0bfd1a35b169bcc57fe66725}{registerSymbol}}(\textcolor{stringliteral}{"{}He-\/4"{}});}
|
||||
\DoxyCodeLine{\ \ \ \ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a3ab4dcda0bfd1a35b169bcc57fe66725}{registerSymbol}}(\textcolor{stringliteral}{"{}He-\/4"{}});}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keywordflow}{try}\ \{}
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition_a262d7133035d4e6f45daa81827abf5e7}{setMolarAbundance}}(\textcolor{stringliteral}{"{}H-\/1"{}},\ -\/3.0);}
|
||||
\DoxyCodeLine{\ \ \ \ \}\ \textcolor{keywordflow}{catch}\ (\textcolor{keyword}{const}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_invalid_composition_error}{InvalidCompositionError}}\ \&e)\ \{\ }
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ std::cerr\ <<\ \textcolor{stringliteral}{"{}Caught\ InvalidCompositionError:\ "{}}\ <<\ e.\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_composition_error_ae44ceddb19da8a8cda7ee150b6826d08}{what}}()\ <<\ \textcolor{stringliteral}{"{}\(\backslash\)n"{}};}
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a262d7133035d4e6f45daa81827abf5e7}{setMolarAbundance}}(\textcolor{stringliteral}{"{}H-\/1"{}},\ -\/3.0);}
|
||||
\DoxyCodeLine{\ \ \ \ \}\ \textcolor{keywordflow}{catch}\ (\textcolor{keyword}{const}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}{InvalidCompositionError}}\ \&e)\ \{\ }
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ std::cerr\ <<\ \textcolor{stringliteral}{"{}Caught\ InvalidCompositionError:\ "{}}\ <<\ e.\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1CompositionError_ae44ceddb19da8a8cda7ee150b6826d08}{what}}()\ <<\ \textcolor{stringliteral}{"{}\(\backslash\)n"{}};}
|
||||
\DoxyCodeLine{\ \ \ \ \}}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{comment}{//\ Mass\ fraction\ construction\ validation}}
|
||||
\DoxyCodeLine{\ \ \ \ \textcolor{keywordflow}{try}\ \{}
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ \mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}}\ bad\ =\ \mbox{\hyperlink{namespacefourdst_1_1composition_aa90b1ef07d607c0c829bedccf381cf54}{buildCompositionFromMassFractions}}(\{\textcolor{stringliteral}{"{}H-\/1"{}},\ \textcolor{stringliteral}{"{}He-\/4"{}}\},\ \{0.6,\ 0.5\});\ \textcolor{comment}{//\ sums\ to\ 1.1}}
|
||||
\DoxyCodeLine{\ \ \ \ \}\ \textcolor{keywordflow}{catch}\ (\textcolor{keyword}{const}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_invalid_composition_error}{InvalidCompositionError}}\ \&e)\ \{}
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ std::cerr\ <<\ \textcolor{stringliteral}{"{}Caught\ InvalidCompositionError:\ "{}}\ <<\ e.\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_composition_error_ae44ceddb19da8a8cda7ee150b6826d08}{what}}()\ <<\ \textcolor{stringliteral}{"{}\(\backslash\)n"{}};}
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}}\ bad\ =\ \mbox{\hyperlink{namespacefourdst_1_1composition_aa90b1ef07d607c0c829bedccf381cf54}{buildCompositionFromMassFractions}}(\{\textcolor{stringliteral}{"{}H-\/1"{}},\ \textcolor{stringliteral}{"{}He-\/4"{}}\},\ \{0.6,\ 0.5\});\ \textcolor{comment}{//\ sums\ to\ 1.1}}
|
||||
\DoxyCodeLine{\ \ \ \ \}\ \textcolor{keywordflow}{catch}\ (\textcolor{keyword}{const}\ \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}{InvalidCompositionError}}\ \&e)\ \{}
|
||||
\DoxyCodeLine{\ \ \ \ \ \ \ \ std::cerr\ <<\ \textcolor{stringliteral}{"{}Caught\ InvalidCompositionError:\ "{}}\ <<\ e.\mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1CompositionError_ae44ceddb19da8a8cda7ee150b6826d08}{what}}()\ <<\ \textcolor{stringliteral}{"{}\(\backslash\)n"{}};}
|
||||
\DoxyCodeLine{\ \ \ \ \}}
|
||||
\DoxyCodeLine{\}}
|
||||
|
||||
@@ -245,7 +245,7 @@ Recommended patterns\+:
|
||||
|
||||
\DoxyHorRuler{0}
|
||||
\hypertarget{index_api_sec}{}\doxysection{\texorpdfstring{Linking and Integration}{Linking and Integration}}\label{index_api_sec}
|
||||
\hypertarget{index_autotoc_md23}{}\doxysubsubsection{\texorpdfstring{Linking with pkg-\/config}{Linking with pkg-\/config}}\label{index_autotoc_md23}
|
||||
\hypertarget{index_autotoc_md23}{}\doxysubsubsection{\texorpdfstring{Linking with pkg-\/config}{Linking with pkg-config}}\label{index_autotoc_md23}
|
||||
If you installed {\ttfamily libcomposition} with the {\ttfamily pkg-\/config} option enabled, you can get the necessary compiler and linker flags easily\+:
|
||||
|
||||
|
||||
@@ -273,7 +273,7 @@ For a complete list of all classes, methods, and functions, see the {\bfseries{N
|
||||
|
||||
\begin{DoxyItemize}
|
||||
\item Namespace overview\+: {\ttfamily \doxylink{namespacefourdst_1_1composition}{fourdst\+::composition}}, {\ttfamily \doxylink{namespacefourdst_1_1atomic}{fourdst\+::atomic}}
|
||||
\item Core classes\+: {\ttfamily \doxylink{classfourdst_1_1composition_1_1_composition}{fourdst\+::composition\+::\+Composition}}, {\ttfamily fourdst\+::composition\+::\+Composition\+Abstract}
|
||||
\item Core classes\+: {\ttfamily \doxylink{classfourdst_1_1composition_1_1Composition}{fourdst\+::composition\+::\+Composition}}, {\ttfamily \doxylink{classfourdst_1_1composition_1_1CompositionAbstract}{fourdst\+::composition\+::\+Composition\+Abstract}}
|
||||
\item Helper utilities\+: {\ttfamily build\+Composition\+From\+Mass\+Fractions}
|
||||
\item Exception hierarchy\+: {\ttfamily \doxylink{namespacefourdst_1_1composition_1_1exceptions}{fourdst\+::composition\+::exceptions}}
|
||||
\end{DoxyItemize}
|
||||
|
||||
@@ -164,7 +164,7 @@
|
||||
\ifdim \dimen@>\z@\vfil\break\fi
|
||||
\global\@colroom\@colht
|
||||
\ifvoid\LT@foot\else
|
||||
\global\advance\vsize-\ht\LT@foot
|
||||
\advance\vsize-\ht\LT@foot
|
||||
\global\advance\@colroom-\ht\LT@foot
|
||||
\dimen@\pagegoal\advance\dimen@-\ht\LT@foot\pagegoal\dimen@
|
||||
\maxdepth\z@
|
||||
@@ -193,13 +193,9 @@
|
||||
\LT@final@warn
|
||||
\fi
|
||||
\endgraf\penalty -\LT@end@pen
|
||||
\ifvoid\LT@foot\else
|
||||
\global\advance\vsize\ht\LT@foot
|
||||
\global\advance\@colroom\ht\LT@foot
|
||||
\dimen@\pagegoal\advance\dimen@\ht\LT@foot\pagegoal\dimen@
|
||||
\fi
|
||||
\endgroup
|
||||
\global\@mparbottom\z@
|
||||
\pagegoal\vsize
|
||||
\endgraf\penalty\z@\addvspace\LTpost
|
||||
\ifvoid\footins\else\insert\footins{}\fi}
|
||||
\def\LT@nofcols#1&{%
|
||||
@@ -396,17 +392,18 @@
|
||||
\setbox\z@\vbox{\unvbox\@cclv}%
|
||||
\ifdim \ht\LT@lastfoot>\ht\LT@foot
|
||||
\dimen@\pagegoal
|
||||
\advance\dimen@\ht\LT@foot
|
||||
\advance\dimen@-\ht\LT@lastfoot
|
||||
\ifdim\dimen@<\ht\z@
|
||||
\setbox\@cclv\vbox{\unvbox\z@\copy\LT@foot\vss}%
|
||||
\@makecol
|
||||
\@outputpage
|
||||
\global\vsize\@colroom
|
||||
\setbox\z@\vbox{\box\LT@head}%
|
||||
\fi
|
||||
\fi
|
||||
\unvbox\z@\ifvoid\LT@lastfoot\copy\LT@foot\else\box\LT@lastfoot\fi
|
||||
\global\@colroom\@colht
|
||||
\global\vsize\@colht
|
||||
\vbox
|
||||
{\unvbox\z@\box\ifvoid\LT@lastfoot\LT@foot\else\LT@lastfoot\fi}%
|
||||
\fi
|
||||
\else
|
||||
\setbox\@cclv\vbox{\unvbox\@cclv\copy\LT@foot\vss}%
|
||||
|
||||
File diff suppressed because it is too large
Load Diff
@@ -9,42 +9,60 @@ Utilities and types for representing and manipulating chemical compositions.
|
||||
\begin{DoxyCompactItemize}
|
||||
\item
|
||||
namespace \mbox{\hyperlink{namespacefourdst_1_1composition_1_1exceptions}{exceptions}}
|
||||
\item
|
||||
namespace \mbox{\hyperlink{namespacefourdst_1_1composition_1_1utils}{utils}}
|
||||
\end{DoxyCompactItemize}
|
||||
\doxysubsubsection*{Classes}
|
||||
\begin{DoxyCompactItemize}
|
||||
\item
|
||||
struct \mbox{\hyperlink{structfourdst_1_1composition_1_1_canonical_composition}{Canonical\+Composition}}
|
||||
struct \mbox{\hyperlink{structfourdst_1_1composition_1_1CanonicalComposition}{Canonical\+Composition}}
|
||||
\begin{DoxyCompactList}\small\item\em Represents the canonical (X, Y, Z) composition of stellar material. \end{DoxyCompactList}\item
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}}
|
||||
\begin{DoxyCompactList}\small\item\em Manages a collection of chemical species and their abundances. \end{DoxyCompactList}\end{DoxyCompactItemize}
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}}
|
||||
\begin{DoxyCompactList}\small\item\em Manages a collection of chemical species and their abundances. \end{DoxyCompactList}\item
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1CompositionAbstract}{Composition\+Abstract}}
|
||||
\begin{DoxyCompactList}\small\item\em Abstract base class for chemical composition representations. \end{DoxyCompactList}\item
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1CompositionDecorator}{Composition\+Decorator}}
|
||||
\item
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1MaskedComposition}{Masked\+Composition}}
|
||||
\end{DoxyCompactItemize}
|
||||
\doxysubsubsection*{Functions}
|
||||
\begin{DoxyCompactItemize}
|
||||
\item
|
||||
\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}} \mbox{\hyperlink{namespacefourdst_1_1composition_aa90b1ef07d607c0c829bedccf381cf54}{build\+Composition\+From\+Mass\+Fractions}} (const std\+::vector$<$ std\+::string $>$ \&symbols, const std\+::vector$<$ double $>$ \&mass\+Fractions)
|
||||
\begin{DoxyCompactList}\small\item\em Build a \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} object from symbols and their corresponding mass fractions. \end{DoxyCompactList}\item
|
||||
\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}} \mbox{\hyperlink{namespacefourdst_1_1composition_a39d4f84dfa85ddda3b9feb5dda1afc1e}{build\+Composition\+From\+Mass\+Fractions}} (const std\+::vector$<$ \mbox{\hyperlink{structfourdst_1_1atomic_1_1_species}{atomic\+::\+Species}} $>$ \&species, const std\+::vector$<$ double $>$ \&mass\+Fractions)
|
||||
\begin{DoxyCompactList}\small\item\em Build a \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} object from species and their corresponding mass fractions. \end{DoxyCompactList}\item
|
||||
\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}} \mbox{\hyperlink{namespacefourdst_1_1composition_a2cb98194b465f646973ceba38d0e7d95}{build\+Composition\+From\+Mass\+Fractions}} (const std\+::set$<$ \mbox{\hyperlink{structfourdst_1_1atomic_1_1_species}{atomic\+::\+Species}} $>$ \&species, const std\+::vector$<$ double $>$ \&mass\+Fractions)
|
||||
\begin{DoxyCompactList}\small\item\em Build a \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} object from species in a set and their corresponding mass fractions. \end{DoxyCompactList}\item
|
||||
std\+::ostream \& \mbox{\hyperlink{namespacefourdst_1_1composition_a5e8ccc2bd9e91eebcd3ef5fe470163a1}{operator$<$$<$}} (std\+::ostream \&os, const \mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}} \&composition)
|
||||
bool \mbox{\hyperlink{namespacefourdst_1_1composition_a06f5abc74104de40349e47ad367c402a}{operator==}} (const \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} \&a, const \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} \&b) noexcept
|
||||
\item
|
||||
\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} \mbox{\hyperlink{namespacefourdst_1_1composition_aa90b1ef07d607c0c829bedccf381cf54}{build\+Composition\+From\+Mass\+Fractions}} (const std\+::vector$<$ std\+::string $>$ \&symbols, const std\+::vector$<$ double $>$ \&mass\+Fractions)
|
||||
\begin{DoxyCompactList}\small\item\em Build a \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object from symbols and their corresponding mass fractions. \end{DoxyCompactList}\item
|
||||
\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} \mbox{\hyperlink{namespacefourdst_1_1composition_a39d4f84dfa85ddda3b9feb5dda1afc1e}{build\+Composition\+From\+Mass\+Fractions}} (const std\+::vector$<$ \mbox{\hyperlink{structfourdst_1_1atomic_1_1Species}{atomic\+::\+Species}} $>$ \&species, const std\+::vector$<$ double $>$ \&mass\+Fractions)
|
||||
\begin{DoxyCompactList}\small\item\em Build a \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object from species and their corresponding mass fractions. \end{DoxyCompactList}\item
|
||||
\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} \mbox{\hyperlink{namespacefourdst_1_1composition_a2cb98194b465f646973ceba38d0e7d95}{build\+Composition\+From\+Mass\+Fractions}} (const std\+::set$<$ \mbox{\hyperlink{structfourdst_1_1atomic_1_1Species}{atomic\+::\+Species}} $>$ \&species, const std\+::vector$<$ double $>$ \&mass\+Fractions)
|
||||
\begin{DoxyCompactList}\small\item\em Build a \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object from species in a set and their corresponding mass fractions. \end{DoxyCompactList}\item
|
||||
\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} \mbox{\hyperlink{namespacefourdst_1_1composition_ada2fea5f3ac5cff3ecd67541a0a094fc}{build\+Composition\+From\+Mass\+Fractions}} (const std\+::unordered\+\_\+map$<$ \mbox{\hyperlink{structfourdst_1_1atomic_1_1Species}{atomic\+::\+Species}}, double $>$ \&mass\+Fractions\+Map)
|
||||
\begin{DoxyCompactList}\small\item\em Build a \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object from a map of species to mass fractions. \end{DoxyCompactList}\item
|
||||
\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} \mbox{\hyperlink{namespacefourdst_1_1composition_abf844ad6e10524bf99fc3bf6c9d68465}{build\+Composition\+From\+Mass\+Fractions}} (const std\+::unordered\+\_\+map$<$ std\+::string, double $>$ \&mass\+Fractions)
|
||||
\begin{DoxyCompactList}\small\item\em Build a \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object from a map of species to mass fractions. \end{DoxyCompactList}\item
|
||||
\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} \mbox{\hyperlink{namespacefourdst_1_1composition_a8163289e584a05b4075c775279761e55}{build\+Composition\+From\+Mass\+Fractions}} (std\+::map$<$ \mbox{\hyperlink{structfourdst_1_1atomic_1_1Species}{atomic\+::\+Species}}, double $>$ mass\+Fractions)
|
||||
\begin{DoxyCompactList}\small\item\em Build a \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object from a map of species to mass fractions. \end{DoxyCompactList}\item
|
||||
\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} \mbox{\hyperlink{namespacefourdst_1_1composition_abd0e185f7fd52130f36414faf2dc07d7}{build\+Composition\+From\+Mass\+Fractions}} (std\+::map$<$ std\+::string, double $>$ mass\+Fractions)
|
||||
\begin{DoxyCompactList}\small\item\em Build a \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object from a map of species to mass fractions. \end{DoxyCompactList}\item
|
||||
std\+::ostream \& \mbox{\hyperlink{namespacefourdst_1_1composition_a5e8ccc2bd9e91eebcd3ef5fe470163a1}{operator$<$$<$}} (std\+::ostream \&os, const \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} \&composition)
|
||||
\begin{DoxyCompactList}\small\item\em OVERLOADS. \end{DoxyCompactList}\end{DoxyCompactItemize}
|
||||
|
||||
|
||||
\doxysubsection{Detailed Description}
|
||||
Utilities and types for representing and manipulating chemical compositions.
|
||||
|
||||
The composition module provides a small, but expressive, API for constructing and querying material compositions used throughout the 4D-\/\+STAR codebase. A \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} represents a collection of atomic species together with their molar abundances. From these molar abundances the module can compute derived quantities such as mass fractions, number fractions, canonical (X, Y, Z) composition, mean particle mass, and the electron abundance (Y\+\_\+e).
|
||||
The composition module provides a small, but expressive, API for constructing and querying material compositions used throughout the 4D-\/\+STAR codebase. A \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} represents a collection of atomic species together with their molar abundances. From these molar abundances the module can compute derived quantities such as mass fractions, number fractions, canonical (X, Y, Z) composition, mean particle mass, and the electron abundance (Y\+\_\+e).
|
||||
|
||||
Key concepts\+:
|
||||
\begin{DoxyItemize}
|
||||
\item Species and Symbols\+: Atomic isotopes are represented by the strongly-\/typed \doxylink{structfourdst_1_1atomic_1_1_species}{fourdst\+::atomic\+::\+Species} values (see {\ttfamily \doxylink{species_8h}{fourdst/atomic/species.\+h}}). Each species also has a human-\/readable string symbol (e.\+g. "{}\+H-\/1"{}, "{}\+He-\/4"{}) used by some constructors and convenience overloads.
|
||||
\item Molar abundances\+: The \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} API accepts and stores molar abundances (absolute mole counts). Many derived quantities (mass fraction, number fraction, mean particle mass) are computed from these molar abundances.
|
||||
\item Canonical composition\+: A \doxylink{structfourdst_1_1composition_1_1_canonical_composition}{Canonical\+Composition} (X, Y, Z) is provided which groups mass fractions into hydrogen (X), helium (Y), and metals (Z). A lightweight struct {\ttfamily \doxylink{structfourdst_1_1composition_1_1_canonical_composition}{Canonical\+Composition}} holds these values and provides an ostream operator for easy logging and testing.
|
||||
\item Caching\+: The concrete \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} implementation caches computed vectors and scalars to avoid repeated work. The cache is invalidated automatically when molar abundances or registered species are changed.
|
||||
\item Species and Symbols\+: Atomic isotopes are represented by the strongly-\/typed \doxylink{structfourdst_1_1atomic_1_1Species}{fourdst\+::atomic\+::\+Species} values (see {\ttfamily \doxylink{species_8h}{fourdst/atomic/species.\+h}}). Each species also has a human-\/readable string symbol (e.\+g. "{}\+H-\/1"{}, "{}\+He-\/4"{}) used by some constructors and convenience overloads.
|
||||
\item Molar abundances\+: The \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} API accepts and stores molar abundances (absolute mole counts). Many derived quantities (mass fraction, number fraction, mean particle mass) are computed from these molar abundances.
|
||||
\item Canonical composition\+: A \doxylink{structfourdst_1_1composition_1_1CanonicalComposition}{Canonical\+Composition} (X, Y, Z) is provided which groups mass fractions into hydrogen (X), helium (Y), and metals (Z). A lightweight struct {\ttfamily \doxylink{structfourdst_1_1composition_1_1CanonicalComposition}{Canonical\+Composition}} holds these values and provides an ostream operator for easy logging and testing.
|
||||
\item Caching\+: The concrete \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} implementation caches computed vectors and scalars to avoid repeated work. The cache is invalidated automatically when molar abundances or registered species are changed.
|
||||
\end{DoxyItemize}\hypertarget{namespacefourdst_1_1composition_autotoc_md6}{}\doxysubsubsection{\texorpdfstring{Main types and functions}{Main types and functions}}\label{namespacefourdst_1_1composition_autotoc_md6}
|
||||
|
||||
\begin{DoxyItemize}
|
||||
\item \doxylink{classfourdst_1_1composition_1_1_composition}{Composition}\+: The primary concrete class for building and interrogating compositions. It implements the \doxylink{class_composition_abstract}{Composition\+Abstract} interface and exposes methods to register symbols/species, set molar abundances, and query all commonly-\/needed derived quantities. Multiple constructors are provided for convenience (from vectors/sets of symbols or species, with optional molar-\/abundance initialization).
|
||||
\item \doxylink{classfourdst_1_1composition_1_1Composition}{Composition}\+: The primary concrete class for building and interrogating compositions. It implements the \doxylink{classfourdst_1_1composition_1_1CompositionAbstract}{Composition\+Abstract} interface and exposes methods to register symbols/species, set molar abundances, and query all commonly-\/needed derived quantities. Multiple constructors are provided for convenience (from vectors/sets of symbols or species, with optional molar-\/abundance initialization).
|
||||
|
||||
Important member functions include\+:
|
||||
\begin{DoxyItemize}
|
||||
@@ -56,13 +74,13 @@ Important member functions include\+:
|
||||
\item get\+Canonical\+Composition
|
||||
\item Iteration support (begin/end) which iterates species from lightest to heaviest because species ordering is defined by atomic mass.
|
||||
\end{DoxyItemize}
|
||||
\item \doxylink{class_composition_abstract}{Composition\+Abstract}\+: A compact abstract interface implemented by \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} which guarantees the presence of all getter/query methods. This allows other components to accept composition-\/like objects without depending on the concrete implementation.
|
||||
\item Utilities (\doxylink{namespacefourdst_1_1composition_aa90b1ef07d607c0c829bedccf381cf54}{fourdst\+::composition\+::build\+Composition\+From\+Mass\+Fractions})\+: Convenience helpers exist to construct a \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} from mass fractions (instead of molar abundances). Those helpers validate that the provided mass fractions sum to unity within a tight tolerance and convert them into the corresponding molar abundances before returning a populated \doxylink{classfourdst_1_1composition_1_1_composition}{Composition}.
|
||||
\item \doxylink{classfourdst_1_1composition_1_1CompositionAbstract}{Composition\+Abstract}\+: A compact abstract interface implemented by \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} which guarantees the presence of all getter/query methods. This allows other components to accept composition-\/like objects without depending on the concrete implementation.
|
||||
\item Utilities (\doxylink{namespacefourdst_1_1composition_aa90b1ef07d607c0c829bedccf381cf54}{fourdst\+::composition\+::build\+Composition\+From\+Mass\+Fractions})\+: Convenience helpers exist to construct a \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} from mass fractions (instead of molar abundances). Those helpers validate that the provided mass fractions sum to unity within a tight tolerance and convert them into the corresponding molar abundances before returning a populated \doxylink{classfourdst_1_1composition_1_1Composition}{Composition}.
|
||||
\item Exceptions (namespace \doxylink{namespacefourdst_1_1composition_1_1exceptions}{fourdst\+::composition\+::exceptions})\+: The module defines a small hierarchy of exceptions for error handling\+:
|
||||
\begin{DoxyItemize}
|
||||
\item Composition\+Error\+: Base class for composition-\/related errors.
|
||||
\item Invalid\+Composition\+Error\+: Thrown when the composition is inconsistent or when mass fractions fail validation.
|
||||
\item Unregistered\+Symbol\+Error\+: Thrown when an operation requires a symbol that hasn\textquotesingle{}t been registered on the \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} object.
|
||||
\item Unregistered\+Symbol\+Error\+: Thrown when an operation requires a symbol that hasn\textquotesingle{}t been registered on the \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object.
|
||||
\item Unknown\+Symbol\+Error\+: Thrown when a provided string symbol does not map to any known atomic species in the atomic species database.
|
||||
\end{DoxyItemize}
|
||||
\end{DoxyItemize}\hypertarget{namespacefourdst_1_1composition_autotoc_md7}{}\doxysubsubsection{\texorpdfstring{Usage examples}{Usage examples}}\label{namespacefourdst_1_1composition_autotoc_md7}
|
||||
@@ -72,15 +90,15 @@ Example 1 – basic construction and queries\+:
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\textcolor{keyword}{using\ namespace\ }\mbox{\hyperlink{namespacefourdst_1_1composition}{fourdst::composition}};}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}}\ comp;}
|
||||
\DoxyCodeLine{comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition_a3ab4dcda0bfd1a35b169bcc57fe66725}{registerSymbol}}(\textcolor{stringliteral}{"{}H-\/1"{}});}
|
||||
\DoxyCodeLine{comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition_a3ab4dcda0bfd1a35b169bcc57fe66725}{registerSymbol}}(\textcolor{stringliteral}{"{}He-\/4"{}});}
|
||||
\DoxyCodeLine{comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition_a262d7133035d4e6f45daa81827abf5e7}{setMolarAbundance}}(\textcolor{stringliteral}{"{}H-\/1"{}},\ 1.0);}
|
||||
\DoxyCodeLine{comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition_a262d7133035d4e6f45daa81827abf5e7}{setMolarAbundance}}(\textcolor{stringliteral}{"{}He-\/4"{}},\ 0.5);}
|
||||
\DoxyCodeLine{\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}}\ comp;}
|
||||
\DoxyCodeLine{comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a3ab4dcda0bfd1a35b169bcc57fe66725}{registerSymbol}}(\textcolor{stringliteral}{"{}H-\/1"{}});}
|
||||
\DoxyCodeLine{comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a3ab4dcda0bfd1a35b169bcc57fe66725}{registerSymbol}}(\textcolor{stringliteral}{"{}He-\/4"{}});}
|
||||
\DoxyCodeLine{comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a262d7133035d4e6f45daa81827abf5e7}{setMolarAbundance}}(\textcolor{stringliteral}{"{}H-\/1"{}},\ 1.0);}
|
||||
\DoxyCodeLine{comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a262d7133035d4e6f45daa81827abf5e7}{setMolarAbundance}}(\textcolor{stringliteral}{"{}He-\/4"{}},\ 0.5);}
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{\textcolor{keywordtype}{double}\ X\_h1\ =\ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition_a9ea2b673341fdc67afeb0f0517a54c8c}{getMassFraction}}(\textcolor{stringliteral}{"{}H-\/1"{}});}
|
||||
\DoxyCodeLine{\textcolor{keywordtype}{double}\ meanA\ =\ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition_afbbb5e51ad5ae5c0fa6bc0094195aecd}{getMeanParticleMass}}();}
|
||||
\DoxyCodeLine{\mbox{\hyperlink{structfourdst_1_1composition_1_1_canonical_composition}{CanonicalComposition}}\ canon\ =\ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition_aac5b214a3d1278e127422224cb9cee50}{getCanonicalComposition}}();}
|
||||
\DoxyCodeLine{\textcolor{keywordtype}{double}\ X\_h1\ =\ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_a9ea2b673341fdc67afeb0f0517a54c8c}{getMassFraction}}(\textcolor{stringliteral}{"{}H-\/1"{}});}
|
||||
\DoxyCodeLine{\textcolor{keywordtype}{double}\ meanA\ =\ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_afbbb5e51ad5ae5c0fa6bc0094195aecd}{getMeanParticleMass}}();}
|
||||
\DoxyCodeLine{\mbox{\hyperlink{structfourdst_1_1composition_1_1CanonicalComposition}{CanonicalComposition}}\ canon\ =\ comp.\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition_aac5b214a3d1278e127422224cb9cee50}{getCanonicalComposition}}();}
|
||||
\DoxyCodeLine{std::cout\ <<\ canon\ <<\ std::endl;\ \textcolor{comment}{//\ prints\ X,\ Y,\ Z}}
|
||||
|
||||
\end{DoxyCode}
|
||||
@@ -92,34 +110,34 @@ Example 2 – constructing from mass fractions\+:
|
||||
\DoxyCodeLine{}
|
||||
\DoxyCodeLine{std::vector<std::string>\ symbols\ =\ \{\textcolor{stringliteral}{"{}H-\/1"{}},\ \textcolor{stringliteral}{"{}He-\/4"{}},\ \textcolor{stringliteral}{"{}C-\/12"{}}\};}
|
||||
\DoxyCodeLine{std::vector<double>\ massFractions\ =\ \{0.70,\ 0.28,\ 0.02\};}
|
||||
\DoxyCodeLine{\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}}\ comp\ =\ \mbox{\hyperlink{namespacefourdst_1_1composition_aa90b1ef07d607c0c829bedccf381cf54}{buildCompositionFromMassFractions}}(symbols,\ massFractions);}
|
||||
\DoxyCodeLine{\mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}}\ comp\ =\ \mbox{\hyperlink{namespacefourdst_1_1composition_aa90b1ef07d607c0c829bedccf381cf54}{buildCompositionFromMassFractions}}(symbols,\ massFractions);}
|
||||
|
||||
\end{DoxyCode}
|
||||
\hypertarget{namespacefourdst_1_1composition_autotoc_md8}{}\doxysubsubsection{\texorpdfstring{Notes and remarks}{Notes and remarks}}\label{namespacefourdst_1_1composition_autotoc_md8}
|
||||
|
||||
\begin{DoxyItemize}
|
||||
\item Molar abundances are the canonical input for the \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} class. When passing mass fractions, use the {\ttfamily build\+Composition\+From\+Mass\+Fractions} helper which performs the safe conversion and validation.
|
||||
\item Molar abundances are the canonical input for the \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} class. When passing mass fractions, use the {\ttfamily build\+Composition\+From\+Mass\+Fractions} helper which performs the safe conversion and validation.
|
||||
\item Many methods throw exceptions from the {\ttfamily \doxylink{namespacefourdst_1_1composition_1_1exceptions}{fourdst\+::composition\+::exceptions}} namespace on invalid usage (unknown symbols, unregistered species, or invalid abundance values). Callers should catch and handle these where appropriate.
|
||||
\item Floating point results (mass/number fractions, mean particle mass, Y\+\_\+e) are computed as doubles and may have small numerical round-\/off. Callers comparing values in tests should use an appropriate tolerance.
|
||||
\end{DoxyItemize}\hypertarget{namespacefourdst_1_1composition_autotoc_md9}{}\doxysubsubsection{\texorpdfstring{See also}{See also}}\label{namespacefourdst_1_1composition_autotoc_md9}
|
||||
|
||||
\begin{DoxyItemize}
|
||||
\item \doxylink{species_8h}{fourdst/atomic/species.\+h} — canonical atomic species definitions and symbols.
|
||||
\item \doxylink{composition_8h}{fourdst/composition/composition.\+h} — concrete \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} implementation.
|
||||
\item \doxylink{composition_8h}{fourdst/composition/composition.\+h} — concrete \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} implementation.
|
||||
\item \doxylink{composition__abstract_8h}{fourdst/composition/composition\+\_\+abstract.\+h} — abstract composition interface.
|
||||
\item \doxylink{utils_8h}{fourdst/composition/utils.\+h} — helpers for constructing compositions from mass fractions.
|
||||
\end{DoxyItemize}
|
||||
|
||||
\doxysubsection{Function Documentation}
|
||||
\Hypertarget{namespacefourdst_1_1composition_a2cb98194b465f646973ceba38d0e7d95}\index{fourdst::composition@{fourdst::composition}!buildCompositionFromMassFractions@{buildCompositionFromMassFractions}}
|
||||
\Hypertarget{namespacefourdst_1_1composition_a2cb98194b465f646973ceba38d0e7d95}\label{namespacefourdst_1_1composition_a2cb98194b465f646973ceba38d0e7d95}
|
||||
\index{fourdst::composition@{fourdst::composition}!buildCompositionFromMassFractions@{buildCompositionFromMassFractions}}
|
||||
\index{buildCompositionFromMassFractions@{buildCompositionFromMassFractions}!fourdst::composition@{fourdst::composition}}
|
||||
\doxysubsubsection{\texorpdfstring{buildCompositionFromMassFractions()}{buildCompositionFromMassFractions()}\hspace{0.1cm}{\footnotesize\ttfamily [1/3]}}
|
||||
{\footnotesize\ttfamily \label{namespacefourdst_1_1composition_a2cb98194b465f646973ceba38d0e7d95}
|
||||
\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}} fourdst\+::composition\+::build\+Composition\+From\+Mass\+Fractions (\begin{DoxyParamCaption}\item[{const std\+::set$<$ \mbox{\hyperlink{structfourdst_1_1atomic_1_1_species}{atomic\+::\+Species}} $>$ \&}]{species}{, }\item[{const std\+::vector$<$ double $>$ \&}]{mass\+Fractions}{}\end{DoxyParamCaption})}
|
||||
\doxysubsubsection{\texorpdfstring{buildCompositionFromMassFractions()}{buildCompositionFromMassFractions()}\hspace{0.1cm}{\footnotesize\ttfamily [1/7]}}
|
||||
{\footnotesize\ttfamily \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} fourdst\+::composition\+::build\+Composition\+From\+Mass\+Fractions (\begin{DoxyParamCaption}\item[{const std\+::set$<$ \mbox{\hyperlink{structfourdst_1_1atomic_1_1Species}{atomic\+::\+Species}} $>$ \&}]{species, }\item[{const std\+::vector$<$ double $>$ \&}]{mass\+Fractions }\end{DoxyParamCaption})}
|
||||
|
||||
|
||||
|
||||
Build a \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} object from species in a set and their corresponding mass fractions.
|
||||
Build a \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object from species in a set and their corresponding mass fractions.
|
||||
|
||||
|
||||
\begin{DoxyParams}{Parameters}
|
||||
@@ -129,13 +147,13 @@ Build a \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} obje
|
||||
\hline
|
||||
\end{DoxyParams}
|
||||
\begin{DoxyReturn}{Returns}
|
||||
A \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} object constructed from the provided species and mass fractions.
|
||||
A \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object constructed from the provided species and mass fractions.
|
||||
\end{DoxyReturn}
|
||||
|
||||
\begin{DoxyExceptions}{Exceptions}
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1_invalid_composition_error}{exceptions\+::\+Invalid\+Composition\+Error}} & if the provided mass fractions do not sum to within one part in 10\texorpdfstring{$^\wedge$}{\string^}10 of 1.\+0. \\
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}{exceptions\+::\+Invalid\+Composition\+Error}} & if the provided mass fractions do not sum to within one part in 10\texorpdfstring{$^\wedge$}{\string^}10 of 1.\+0. \\
|
||||
\hline
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1_invalid_composition_error}{exceptions\+::\+Invalid\+Composition\+Error}} & if the number of species does not match the number of mass fractions.\\
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}{exceptions\+::\+Invalid\+Composition\+Error}} & if the number of species does not match the number of mass fractions.\\
|
||||
\hline
|
||||
\end{DoxyExceptions}
|
||||
\begin{DoxyNote}{Note}
|
||||
@@ -145,15 +163,69 @@ This is the version of the function which the other overloads ultimately call.
|
||||
|
||||
Definition at line \mbox{\hyperlink{utils_8cpp_source_l00036}{36}} of file \mbox{\hyperlink{utils_8cpp_source}{utils.\+cpp}}.
|
||||
|
||||
\Hypertarget{namespacefourdst_1_1composition_a39d4f84dfa85ddda3b9feb5dda1afc1e}\index{fourdst::composition@{fourdst::composition}!buildCompositionFromMassFractions@{buildCompositionFromMassFractions}}
|
||||
\Hypertarget{namespacefourdst_1_1composition_ada2fea5f3ac5cff3ecd67541a0a094fc}\label{namespacefourdst_1_1composition_ada2fea5f3ac5cff3ecd67541a0a094fc}
|
||||
\index{fourdst::composition@{fourdst::composition}!buildCompositionFromMassFractions@{buildCompositionFromMassFractions}}
|
||||
\index{buildCompositionFromMassFractions@{buildCompositionFromMassFractions}!fourdst::composition@{fourdst::composition}}
|
||||
\doxysubsubsection{\texorpdfstring{buildCompositionFromMassFractions()}{buildCompositionFromMassFractions()}\hspace{0.1cm}{\footnotesize\ttfamily [2/3]}}
|
||||
{\footnotesize\ttfamily \label{namespacefourdst_1_1composition_a39d4f84dfa85ddda3b9feb5dda1afc1e}
|
||||
\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}} fourdst\+::composition\+::build\+Composition\+From\+Mass\+Fractions (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ \mbox{\hyperlink{structfourdst_1_1atomic_1_1_species}{atomic\+::\+Species}} $>$ \&}]{species}{, }\item[{const std\+::vector$<$ double $>$ \&}]{mass\+Fractions}{}\end{DoxyParamCaption})}
|
||||
\doxysubsubsection{\texorpdfstring{buildCompositionFromMassFractions()}{buildCompositionFromMassFractions()}\hspace{0.1cm}{\footnotesize\ttfamily [2/7]}}
|
||||
{\footnotesize\ttfamily \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} fourdst\+::composition\+::build\+Composition\+From\+Mass\+Fractions (\begin{DoxyParamCaption}\item[{const std\+::unordered\+\_\+map$<$ \mbox{\hyperlink{structfourdst_1_1atomic_1_1Species}{atomic\+::\+Species}}, double $>$ \&}]{mass\+Fractions\+Map }\end{DoxyParamCaption})}
|
||||
|
||||
|
||||
|
||||
Build a \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} object from species and their corresponding mass fractions.
|
||||
Build a \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object from a map of species to mass fractions.
|
||||
|
||||
|
||||
\begin{DoxyParams}{Parameters}
|
||||
{\em mass\+Fractions\+Map} & The map of species to their corresponding mass fractions. \\
|
||||
\hline
|
||||
\end{DoxyParams}
|
||||
\begin{DoxyReturn}{Returns}
|
||||
A \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object constructed from the provided species and mass fractions.
|
||||
\end{DoxyReturn}
|
||||
|
||||
\begin{DoxyExceptions}{Exceptions}
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}{exceptions\+::\+Invalid\+Composition\+Error}} & if the provided mass fractions do not sum to within one part in 10\texorpdfstring{$^\wedge$}{\string^}10 of 1.\+0. \\
|
||||
\hline
|
||||
\end{DoxyExceptions}
|
||||
|
||||
|
||||
Definition at line \mbox{\hyperlink{utils_8cpp_source_l00107}{107}} of file \mbox{\hyperlink{utils_8cpp_source}{utils.\+cpp}}.
|
||||
|
||||
\Hypertarget{namespacefourdst_1_1composition_abf844ad6e10524bf99fc3bf6c9d68465}\label{namespacefourdst_1_1composition_abf844ad6e10524bf99fc3bf6c9d68465}
|
||||
\index{fourdst::composition@{fourdst::composition}!buildCompositionFromMassFractions@{buildCompositionFromMassFractions}}
|
||||
\index{buildCompositionFromMassFractions@{buildCompositionFromMassFractions}!fourdst::composition@{fourdst::composition}}
|
||||
\doxysubsubsection{\texorpdfstring{buildCompositionFromMassFractions()}{buildCompositionFromMassFractions()}\hspace{0.1cm}{\footnotesize\ttfamily [3/7]}}
|
||||
{\footnotesize\ttfamily \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} fourdst\+::composition\+::build\+Composition\+From\+Mass\+Fractions (\begin{DoxyParamCaption}\item[{const std\+::unordered\+\_\+map$<$ std\+::string, double $>$ \&}]{mass\+Fractions }\end{DoxyParamCaption})}
|
||||
|
||||
|
||||
|
||||
Build a \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object from a map of species to mass fractions.
|
||||
|
||||
|
||||
\begin{DoxyParams}{Parameters}
|
||||
{\em mass\+Fractions} & The map of species to their corresponding mass fractions. \\
|
||||
\hline
|
||||
\end{DoxyParams}
|
||||
\begin{DoxyReturn}{Returns}
|
||||
A \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object constructed from the provided species and mass fractions.
|
||||
\end{DoxyReturn}
|
||||
|
||||
\begin{DoxyExceptions}{Exceptions}
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}{exceptions\+::\+Invalid\+Composition\+Error}} & if the provided mass fractions do not sum to within one part in 10\texorpdfstring{$^\wedge$}{\string^}10 of 1.\+0. \\
|
||||
\hline
|
||||
\end{DoxyExceptions}
|
||||
|
||||
|
||||
Definition at line \mbox{\hyperlink{utils_8cpp_source_l00170}{170}} of file \mbox{\hyperlink{utils_8cpp_source}{utils.\+cpp}}.
|
||||
|
||||
\Hypertarget{namespacefourdst_1_1composition_a39d4f84dfa85ddda3b9feb5dda1afc1e}\label{namespacefourdst_1_1composition_a39d4f84dfa85ddda3b9feb5dda1afc1e}
|
||||
\index{fourdst::composition@{fourdst::composition}!buildCompositionFromMassFractions@{buildCompositionFromMassFractions}}
|
||||
\index{buildCompositionFromMassFractions@{buildCompositionFromMassFractions}!fourdst::composition@{fourdst::composition}}
|
||||
\doxysubsubsection{\texorpdfstring{buildCompositionFromMassFractions()}{buildCompositionFromMassFractions()}\hspace{0.1cm}{\footnotesize\ttfamily [4/7]}}
|
||||
{\footnotesize\ttfamily \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} fourdst\+::composition\+::build\+Composition\+From\+Mass\+Fractions (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ \mbox{\hyperlink{structfourdst_1_1atomic_1_1Species}{atomic\+::\+Species}} $>$ \&}]{species, }\item[{const std\+::vector$<$ double $>$ \&}]{mass\+Fractions }\end{DoxyParamCaption})}
|
||||
|
||||
|
||||
|
||||
Build a \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object from species and their corresponding mass fractions.
|
||||
|
||||
|
||||
\begin{DoxyParams}{Parameters}
|
||||
@@ -163,28 +235,28 @@ Build a \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} obje
|
||||
\hline
|
||||
\end{DoxyParams}
|
||||
\begin{DoxyReturn}{Returns}
|
||||
A \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} object constructed from the provided species and mass fractions.
|
||||
A \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object constructed from the provided species and mass fractions.
|
||||
\end{DoxyReturn}
|
||||
|
||||
\begin{DoxyExceptions}{Exceptions}
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1_invalid_composition_error}{exceptions\+::\+Invalid\+Composition\+Error}} & if the provided mass fractions do not sum to within one part in 10\texorpdfstring{$^\wedge$}{\string^}10 of 1.\+0. \\
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}{exceptions\+::\+Invalid\+Composition\+Error}} & if the provided mass fractions do not sum to within one part in 10\texorpdfstring{$^\wedge$}{\string^}10 of 1.\+0. \\
|
||||
\hline
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1_invalid_composition_error}{exceptions\+::\+Invalid\+Composition\+Error}} & if the number of species does not match the number of mass fractions. \\
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}{exceptions\+::\+Invalid\+Composition\+Error}} & if the number of species does not match the number of mass fractions. \\
|
||||
\hline
|
||||
\end{DoxyExceptions}
|
||||
|
||||
|
||||
Definition at line \mbox{\hyperlink{utils_8cpp_source_l00070}{70}} of file \mbox{\hyperlink{utils_8cpp_source}{utils.\+cpp}}.
|
||||
|
||||
\Hypertarget{namespacefourdst_1_1composition_aa90b1ef07d607c0c829bedccf381cf54}\index{fourdst::composition@{fourdst::composition}!buildCompositionFromMassFractions@{buildCompositionFromMassFractions}}
|
||||
\Hypertarget{namespacefourdst_1_1composition_aa90b1ef07d607c0c829bedccf381cf54}\label{namespacefourdst_1_1composition_aa90b1ef07d607c0c829bedccf381cf54}
|
||||
\index{fourdst::composition@{fourdst::composition}!buildCompositionFromMassFractions@{buildCompositionFromMassFractions}}
|
||||
\index{buildCompositionFromMassFractions@{buildCompositionFromMassFractions}!fourdst::composition@{fourdst::composition}}
|
||||
\doxysubsubsection{\texorpdfstring{buildCompositionFromMassFractions()}{buildCompositionFromMassFractions()}\hspace{0.1cm}{\footnotesize\ttfamily [3/3]}}
|
||||
{\footnotesize\ttfamily \label{namespacefourdst_1_1composition_aa90b1ef07d607c0c829bedccf381cf54}
|
||||
\mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}} fourdst\+::composition\+::build\+Composition\+From\+Mass\+Fractions (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ std\+::string $>$ \&}]{symbols}{, }\item[{const std\+::vector$<$ double $>$ \&}]{mass\+Fractions}{}\end{DoxyParamCaption})}
|
||||
\doxysubsubsection{\texorpdfstring{buildCompositionFromMassFractions()}{buildCompositionFromMassFractions()}\hspace{0.1cm}{\footnotesize\ttfamily [5/7]}}
|
||||
{\footnotesize\ttfamily \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} fourdst\+::composition\+::build\+Composition\+From\+Mass\+Fractions (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ std\+::string $>$ \&}]{symbols, }\item[{const std\+::vector$<$ double $>$ \&}]{mass\+Fractions }\end{DoxyParamCaption})}
|
||||
|
||||
|
||||
|
||||
Build a \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} object from symbols and their corresponding mass fractions.
|
||||
Build a \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object from symbols and their corresponding mass fractions.
|
||||
|
||||
|
||||
\begin{DoxyParams}{Parameters}
|
||||
@@ -194,38 +266,92 @@ Build a \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} obje
|
||||
\hline
|
||||
\end{DoxyParams}
|
||||
\begin{DoxyReturn}{Returns}
|
||||
A \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} object constructed from the provided symbols and mass fractions.
|
||||
A \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object constructed from the provided symbols and mass fractions.
|
||||
\end{DoxyReturn}
|
||||
|
||||
\begin{DoxyExceptions}{Exceptions}
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1_unknown_symbol_error}{exceptions\+::\+Unknown\+Symbol\+Error}} & if any symbol is invalid. Symbols are invalid if they are not registered at compile time in the atomic species database ({\ttfamily \doxylink{species_8h}{fourdst/atomic/species.\+h}}). \\
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1UnknownSymbolError}{exceptions\+::\+Unknown\+Symbol\+Error}} & if any symbol is invalid. Symbols are invalid if they are not registered at compile time in the atomic species database ({\ttfamily \doxylink{species_8h}{fourdst/atomic/species.\+h}}). \\
|
||||
\hline
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1_invalid_composition_error}{exceptions\+::\+Invalid\+Composition\+Error}} & if the provided mass fractions do not sum to within one part in 10\texorpdfstring{$^\wedge$}{\string^}10 of 1.\+0. \\
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}{exceptions\+::\+Invalid\+Composition\+Error}} & if the provided mass fractions do not sum to within one part in 10\texorpdfstring{$^\wedge$}{\string^}10 of 1.\+0. \\
|
||||
\hline
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1_invalid_composition_error}{exceptions\+::\+Invalid\+Composition\+Error}} & if the number of symbols does not match the number of mass fractions. \\
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}{exceptions\+::\+Invalid\+Composition\+Error}} & if the number of symbols does not match the number of mass fractions. \\
|
||||
\hline
|
||||
\end{DoxyExceptions}
|
||||
|
||||
|
||||
Definition at line \mbox{\hyperlink{utils_8cpp_source_l00074}{74}} of file \mbox{\hyperlink{utils_8cpp_source}{utils.\+cpp}}.
|
||||
Definition at line \mbox{\hyperlink{utils_8cpp_source_l00084}{84}} of file \mbox{\hyperlink{utils_8cpp_source}{utils.\+cpp}}.
|
||||
|
||||
\Hypertarget{namespacefourdst_1_1composition_a5e8ccc2bd9e91eebcd3ef5fe470163a1}\index{fourdst::composition@{fourdst::composition}!operator$<$$<$@{operator$<$$<$}}
|
||||
\Hypertarget{namespacefourdst_1_1composition_a8163289e584a05b4075c775279761e55}\label{namespacefourdst_1_1composition_a8163289e584a05b4075c775279761e55}
|
||||
\index{fourdst::composition@{fourdst::composition}!buildCompositionFromMassFractions@{buildCompositionFromMassFractions}}
|
||||
\index{buildCompositionFromMassFractions@{buildCompositionFromMassFractions}!fourdst::composition@{fourdst::composition}}
|
||||
\doxysubsubsection{\texorpdfstring{buildCompositionFromMassFractions()}{buildCompositionFromMassFractions()}\hspace{0.1cm}{\footnotesize\ttfamily [6/7]}}
|
||||
{\footnotesize\ttfamily \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} fourdst\+::composition\+::build\+Composition\+From\+Mass\+Fractions (\begin{DoxyParamCaption}\item[{std\+::map$<$ \mbox{\hyperlink{structfourdst_1_1atomic_1_1Species}{atomic\+::\+Species}}, double $>$}]{mass\+Fractions }\end{DoxyParamCaption})}
|
||||
|
||||
|
||||
|
||||
Build a \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object from a map of species to mass fractions.
|
||||
|
||||
|
||||
\begin{DoxyParams}{Parameters}
|
||||
{\em mass\+Fractions} & The map of species to their corresponding mass fractions. \\
|
||||
\hline
|
||||
\end{DoxyParams}
|
||||
\begin{DoxyReturn}{Returns}
|
||||
A \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object constructed from the provided species and mass fractions.
|
||||
\end{DoxyReturn}
|
||||
|
||||
\begin{DoxyExceptions}{Exceptions}
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}{exceptions\+::\+Invalid\+Composition\+Error}} & if the provided mass fractions do not sum to within one part in 10\texorpdfstring{$^\wedge$}{\string^}10 of 1.\+0. \\
|
||||
\hline
|
||||
\end{DoxyExceptions}
|
||||
|
||||
|
||||
Definition at line \mbox{\hyperlink{utils_8cpp_source_l00127}{127}} of file \mbox{\hyperlink{utils_8cpp_source}{utils.\+cpp}}.
|
||||
|
||||
\Hypertarget{namespacefourdst_1_1composition_abd0e185f7fd52130f36414faf2dc07d7}\label{namespacefourdst_1_1composition_abd0e185f7fd52130f36414faf2dc07d7}
|
||||
\index{fourdst::composition@{fourdst::composition}!buildCompositionFromMassFractions@{buildCompositionFromMassFractions}}
|
||||
\index{buildCompositionFromMassFractions@{buildCompositionFromMassFractions}!fourdst::composition@{fourdst::composition}}
|
||||
\doxysubsubsection{\texorpdfstring{buildCompositionFromMassFractions()}{buildCompositionFromMassFractions()}\hspace{0.1cm}{\footnotesize\ttfamily [7/7]}}
|
||||
{\footnotesize\ttfamily \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} fourdst\+::composition\+::build\+Composition\+From\+Mass\+Fractions (\begin{DoxyParamCaption}\item[{std\+::map$<$ std\+::string, double $>$}]{mass\+Fractions }\end{DoxyParamCaption})}
|
||||
|
||||
|
||||
|
||||
Build a \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object from a map of species to mass fractions.
|
||||
|
||||
|
||||
\begin{DoxyParams}{Parameters}
|
||||
{\em mass\+Fractions} & The map of species to their corresponding mass fractions. \\
|
||||
\hline
|
||||
\end{DoxyParams}
|
||||
\begin{DoxyReturn}{Returns}
|
||||
A \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} object constructed from the provided species and mass fractions.
|
||||
\end{DoxyReturn}
|
||||
|
||||
\begin{DoxyExceptions}{Exceptions}
|
||||
{\em \doxylink{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}{exceptions\+::\+Invalid\+Composition\+Error}} & if the provided mass fractions do not sum to within one part in 10\texorpdfstring{$^\wedge$}{\string^}10 of 1.\+0. \\
|
||||
\hline
|
||||
\end{DoxyExceptions}
|
||||
|
||||
|
||||
Definition at line \mbox{\hyperlink{utils_8cpp_source_l00141}{141}} of file \mbox{\hyperlink{utils_8cpp_source}{utils.\+cpp}}.
|
||||
|
||||
\Hypertarget{namespacefourdst_1_1composition_a5e8ccc2bd9e91eebcd3ef5fe470163a1}\label{namespacefourdst_1_1composition_a5e8ccc2bd9e91eebcd3ef5fe470163a1}
|
||||
\index{fourdst::composition@{fourdst::composition}!operator$<$$<$@{operator$<$$<$}}
|
||||
\index{operator$<$$<$@{operator$<$$<$}!fourdst::composition@{fourdst::composition}}
|
||||
\doxysubsubsection{\texorpdfstring{operator$<$$<$()}{operator<<()}}
|
||||
{\footnotesize\ttfamily \label{namespacefourdst_1_1composition_a5e8ccc2bd9e91eebcd3ef5fe470163a1}
|
||||
std\+::ostream \& fourdst\+::composition\+::operator$<$$<$ (\begin{DoxyParamCaption}\item[{std\+::ostream \&}]{os}{, }\item[{const \mbox{\hyperlink{classfourdst_1_1composition_1_1_composition}{Composition}} \&}]{composition}{}\end{DoxyParamCaption})}
|
||||
{\footnotesize\ttfamily std\+::ostream \& fourdst\+::composition\+::operator$<$$<$ (\begin{DoxyParamCaption}\item[{std\+::ostream \&}]{os, }\item[{const \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} \&}]{composition }\end{DoxyParamCaption})}
|
||||
|
||||
|
||||
|
||||
OVERLOADS.
|
||||
|
||||
Overloaded output stream operator for \doxylink{classfourdst_1_1composition_1_1_composition}{Composition}.
|
||||
Overloaded output stream operator for \doxylink{classfourdst_1_1composition_1_1Composition}{Composition}.
|
||||
|
||||
|
||||
\begin{DoxyParams}{Parameters}
|
||||
{\em os} & The output stream. \\
|
||||
\hline
|
||||
{\em composition} & The \doxylink{classfourdst_1_1composition_1_1_composition}{Composition} to output. \\
|
||||
{\em composition} & The \doxylink{classfourdst_1_1composition_1_1Composition}{Composition} to output. \\
|
||||
\hline
|
||||
\end{DoxyParams}
|
||||
\begin{DoxyReturn}{Returns}
|
||||
@@ -233,5 +359,15 @@ The output stream.
|
||||
\end{DoxyReturn}
|
||||
|
||||
|
||||
Definition at line \mbox{\hyperlink{composition_8cpp_source_l00593}{593}} of file \mbox{\hyperlink{composition_8cpp_source}{composition.\+cpp}}.
|
||||
Definition at line \mbox{\hyperlink{composition_8cpp_source_l00644}{644}} of file \mbox{\hyperlink{composition_8cpp_source}{composition.\+cpp}}.
|
||||
|
||||
\Hypertarget{namespacefourdst_1_1composition_a06f5abc74104de40349e47ad367c402a}\label{namespacefourdst_1_1composition_a06f5abc74104de40349e47ad367c402a}
|
||||
\index{fourdst::composition@{fourdst::composition}!operator==@{operator==}}
|
||||
\index{operator==@{operator==}!fourdst::composition@{fourdst::composition}}
|
||||
\doxysubsubsection{\texorpdfstring{operator==()}{operator==()}}
|
||||
{\footnotesize\ttfamily bool fourdst\+::composition\+::operator== (\begin{DoxyParamCaption}\item[{const \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} \&}]{a, }\item[{const \mbox{\hyperlink{classfourdst_1_1composition_1_1Composition}{Composition}} \&}]{b }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}, {\ttfamily [noexcept]}}
|
||||
|
||||
|
||||
|
||||
Definition at line \mbox{\hyperlink{composition_8h_source_l00837}{837}} of file \mbox{\hyperlink{composition_8h_source}{composition.\+h}}.
|
||||
|
||||
|
||||
@@ -3,13 +3,13 @@
|
||||
\doxysubsubsection*{Classes}
|
||||
\begin{DoxyCompactItemize}
|
||||
\item
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_composition_error}{Composition\+Error}}
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1CompositionError}{Composition\+Error}}
|
||||
\begin{DoxyCompactList}\small\item\em Base class for exceptions related to composition objects. \end{DoxyCompactList}\item
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_invalid_composition_error}{Invalid\+Composition\+Error}}
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}{Invalid\+Composition\+Error}}
|
||||
\begin{DoxyCompactList}\small\item\em Exception thrown when a composition is in an invalid or inconsistent state. \end{DoxyCompactList}\item
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_species_error}{Species\+Error}}
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1SpeciesError}{Species\+Error}}
|
||||
\begin{DoxyCompactList}\small\item\em Base class for exceptions related to atomic species. \end{DoxyCompactList}\item
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_unknown_symbol_error}{Unknown\+Symbol\+Error}}
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1UnknownSymbolError}{Unknown\+Symbol\+Error}}
|
||||
\begin{DoxyCompactList}\small\item\em Exception thrown when an unknown symbol is encountered. \end{DoxyCompactList}\item
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1_unregistered_symbol_error}{Unregistered\+Symbol\+Error}}
|
||||
class \mbox{\hyperlink{classfourdst_1_1composition_1_1exceptions_1_1UnregisteredSymbolError}{Unregistered\+Symbol\+Error}}
|
||||
\begin{DoxyCompactList}\small\item\em Exception thrown when a symbol is used that has not been registered. \end{DoxyCompactList}\end{DoxyCompactItemize}
|
||||
|
||||
@@ -4,4 +4,6 @@ Here is a list of all namespaces with brief descriptions\+:\begin{DoxyCompactLis
|
||||
\item\contentsline{section}{\mbox{\hyperlink{namespacefourdst_1_1atomic}{fourdst\+::atomic}} \\*Contains canonical information about atomic species and elements used by 4D-\/\+STAR }{\pageref{namespacefourdst_1_1atomic}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{namespacefourdst_1_1composition}{fourdst\+::composition}} \\*Utilities and types for representing and manipulating chemical compositions }{\pageref{namespacefourdst_1_1composition}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{namespacefourdst_1_1composition_1_1exceptions}{fourdst\+::composition\+::exceptions}} }{\pageref{namespacefourdst_1_1composition_1_1exceptions}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{namespacefourdst_1_1composition_1_1utils}{fourdst\+::composition\+::utils}} }{\pageref{namespacefourdst_1_1composition_1_1utils}}{}
|
||||
\item\contentsline{section}{\mbox{\hyperlink{namespacestd}{std}} \\*STL namespace }{\pageref{namespacestd}}{}
|
||||
\end{DoxyCompactList}
|
||||
|
||||
@@ -1,16 +1,7 @@
|
||||
% Handle batch mode
|
||||
% to overcome problems with too many open files
|
||||
\let\mypdfximage\pdfximage\def\pdfximage{\immediate\mypdfximage}
|
||||
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|
||||
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\special{pdf:minorversion 7}
|
||||
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||||
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|
||||
\pdfminorversion=7
|
||||
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|
||||
\pdfminorversion=7
|
||||
% Set document class depending on configuration
|
||||
\documentclass[twoside]{book}
|
||||
%% moved from doxygen.sty due to workaround for LaTex 2019 version and unmaintained tabu package
|
||||
@@ -31,18 +22,10 @@
|
||||
\let\protected@wlog\@@protected@wlog
|
||||
\makeatother
|
||||
\IfFormatAtLeastTF{2016/01/01}{}{\usepackage{fixltx2e}} % for \textsubscript
|
||||
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|
||||
\IfFormatAtLeastTF{2015/01/01}{\pdfsuppresswarningpagegroup=1}{}
|
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||||
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|
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|
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\defaultfontfeatures{Ligatures={TeX}}
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
\usepackage[utf8]{inputenc}
|
||||
\usepackage{makeidx}
|
||||
\PassOptionsToPackage{warn}{textcomp}
|
||||
\usepackage{textcomp}
|
||||
@@ -51,10 +34,7 @@
|
||||
% NLS support packages
|
||||
% Define default fonts
|
||||
% Font selection
|
||||
\iftutex
|
||||
\else
|
||||
\usepackage[T1]{fontenc}
|
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|
||||
\usepackage[T1]{fontenc}
|
||||
% set main and monospaced font
|
||||
\usepackage[scaled=.90]{helvet}
|
||||
\usepackage{courier}
|
||||
@@ -135,14 +115,13 @@
|
||||
}
|
||||
% ToC, LoF, LoT, bibliography, and index
|
||||
% Indices & bibliography
|
||||
\usepackage[numbers]{natbib}
|
||||
\usepackage{natbib}
|
||||
\usepackage[titles]{tocloft}
|
||||
\setcounter{tocdepth}{3}
|
||||
\setcounter{secnumdepth}{5}
|
||||
% creating indexes
|
||||
\makeindex
|
||||
\ifPDFTeX
|
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|
||||
\usepackage{newunicodechar}
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||||
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\def\doxynewunicodechar#1#2{%
|
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\@tempswafalse
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@@ -161,20 +140,15 @@
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\doxynewunicodechar{⁻}{${}^{-}$}% Superscript minus
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\doxynewunicodechar{²}{${}^{2}$}% Superscript two
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\doxynewunicodechar{³}{${}^{3}$}% Superscript three
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||||
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% Hyperlinks
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||||
% Hyperlinks (required, but should be loaded last)
|
||||
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|
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|
||||
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||||
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|
||||
\hypersetup{%
|
||||
@@ -220,9 +194,9 @@
|
||||
\vspace*{7cm}
|
||||
\begin{center}%
|
||||
{\Large fourdst\+::libcomposition}\\
|
||||
[1ex]\large v2.\+0.\+1 \\
|
||||
[1ex]\large v2.\+2.\+1 \\
|
||||
\vspace*{1cm}
|
||||
{\large Generated by Doxygen 1.13.2}\\
|
||||
{\large Generated by Doxygen 1.9.8}\\
|
||||
\end{center}
|
||||
\end{titlepage}
|
||||
\clearemptydoublepage
|
||||
@@ -247,23 +221,29 @@
|
||||
\input{namespacefourdst_1_1atomic}
|
||||
\input{namespacefourdst_1_1composition}
|
||||
\input{namespacefourdst_1_1composition_1_1exceptions}
|
||||
\input{namespacefourdst_1_1composition_1_1utils}
|
||||
\input{namespacestd}
|
||||
\chapter{Class Documentation}
|
||||
\input{structfourdst_1_1composition_1_1_canonical_composition}
|
||||
\input{classfourdst_1_1composition_1_1_composition}
|
||||
\input{class_composition_abstract}
|
||||
\input{structfourdst_1_1composition_1_1_composition_1_1_composition_cache}
|
||||
\input{classfourdst_1_1composition_1_1exceptions_1_1_composition_error}
|
||||
\input{structstd_1_1hash_3_01fourdst_1_1atomic_1_1_species_01_4}
|
||||
\input{classfourdst_1_1composition_1_1exceptions_1_1_invalid_composition_error}
|
||||
\input{structfourdst_1_1atomic_1_1_species}
|
||||
\input{classfourdst_1_1composition_1_1exceptions_1_1_species_error}
|
||||
\input{classfourdst_1_1composition_1_1exceptions_1_1_unknown_symbol_error}
|
||||
\input{classfourdst_1_1composition_1_1exceptions_1_1_unregistered_symbol_error}
|
||||
\input{structfourdst_1_1composition_1_1CanonicalComposition}
|
||||
\input{classfourdst_1_1composition_1_1Composition}
|
||||
\input{classfourdst_1_1composition_1_1CompositionAbstract}
|
||||
\input{structfourdst_1_1composition_1_1Composition_1_1CompositionCache}
|
||||
\input{classfourdst_1_1composition_1_1CompositionDecorator}
|
||||
\input{classfourdst_1_1composition_1_1exceptions_1_1CompositionError}
|
||||
\input{structfourdst_1_1composition_1_1utils_1_1CompositionHash}
|
||||
\input{structstd_1_1hash_3_01fourdst_1_1atomic_1_1Species_01_4}
|
||||
\input{structstd_1_1hash_3_01fourdst_1_1composition_1_1Composition_01_4}
|
||||
\input{classfourdst_1_1composition_1_1exceptions_1_1InvalidCompositionError}
|
||||
\input{classfourdst_1_1composition_1_1MaskedComposition}
|
||||
\input{structfourdst_1_1atomic_1_1Species}
|
||||
\input{classfourdst_1_1composition_1_1exceptions_1_1SpeciesError}
|
||||
\input{classfourdst_1_1composition_1_1exceptions_1_1UnknownSymbolError}
|
||||
\input{classfourdst_1_1composition_1_1exceptions_1_1UnregisteredSymbolError}
|
||||
\chapter{File Documentation}
|
||||
\input{mainpage_8md}
|
||||
\input{atomic_8dox}
|
||||
\input{atomic_species_8h}
|
||||
\input{atomic_species_8h_source}
|
||||
\input{atomicSpecies_8h}
|
||||
\input{atomicSpecies_8h_source}
|
||||
\input{elements_8h}
|
||||
\input{elements_8h_source}
|
||||
\input{species_8h}
|
||||
@@ -273,12 +253,20 @@
|
||||
\input{composition_8h_source}
|
||||
\input{composition__abstract_8h}
|
||||
\input{composition__abstract_8h_source}
|
||||
\input{composition__decorator__abstract_8h}
|
||||
\input{composition__decorator__abstract_8h_source}
|
||||
\input{composition__masked_8h}
|
||||
\input{composition__masked_8h_source}
|
||||
\input{exceptions__composition_8h}
|
||||
\input{exceptions__composition_8h_source}
|
||||
\input{utils_8h}
|
||||
\input{utils_8h_source}
|
||||
\input{composition__hash_8h}
|
||||
\input{composition__hash_8h_source}
|
||||
\input{composition_8cpp}
|
||||
\input{composition_8cpp_source}
|
||||
\input{composition__masked_8cpp}
|
||||
\input{composition__masked_8cpp_source}
|
||||
\input{utils_8cpp}
|
||||
\input{utils_8cpp_source}
|
||||
%--- End generated contents ---
|
||||
|
||||
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Reference in New Issue
Block a user