docs(docs): rebuilt docs

docs/html/search/all_0.js

@@ -1,4 +1,7 @@
 var searchData=
 [
-  ['_5f_5finit_5f_5f_2epy_0',['__init__.py',['../build_2lib_2opatio_2____init_____8py.html',1,'(Global Namespace)'],['../build_2lib_2opatio_2opat_2____init_____8py.html',1,'(Global Namespace)'],['../src_2opatio_2____init_____8py.html',1,'(Global Namespace)'],['../src_2opatio_2opat_2____init_____8py.html',1,'(Global Namespace)']]]
+  ['4d_20stellar_20structure_20and_20evolution_20code_0',['4DSSE: A 4D Stellar Structure and Evolution Code',['../index.html',1,'']]],
+  ['4dsse_1',['Building 4DSSE',['../index.html#build_sec',1,'']]],
+  ['4dsse_3a_20a_204d_20stellar_20structure_20and_20evolution_20code_2',['4DSSE: A 4D Stellar Structure and Evolution Code',['../index.html',1,'']]],
+  ['4dstartypes_2eh_3',['4DSTARTypes.h',['../4_d_s_t_a_r_types_8h.html',1,'']]]
 ];

docs/html/search/all_1.js

@@ -1,6 +1,22 @@
 var searchData=
 [
-  ['add_5fintegrator_1',['add_integrator',['../classCompositeNonlinearIntegrator.html#af336df4849e99a3bc95161f03868efc4',1,'CompositeNonlinearIntegrator']]],
-  ['assembleelementgrad_2',['AssembleElementGrad',['../classNonlinearPowerIntegrator.html#a5d8116206e35119fbee20540f5bd3157',1,'NonlinearPowerIntegrator::AssembleElementGrad()'],['../classBilinearIntegratorWrapper.html#a19b6facddeba8256619981e6276f5815',1,'BilinearIntegratorWrapper::AssembleElementGrad()'],['../classCompositeNonlinearIntegrator.html#a2b466f6e16a5797f5ed50621fc4818a0',1,'CompositeNonlinearIntegrator::AssembleElementGrad()']]],
-  ['assembleelementvector_3',['AssembleElementVector',['../classNonlinearPowerIntegrator.html#a23b79c0ab632824ffda9b43928a00504',1,'NonlinearPowerIntegrator::AssembleElementVector()'],['../classBilinearIntegratorWrapper.html#a10c3ac5bb62c91c3a437924e33a527d8',1,'BilinearIntegratorWrapper::AssembleElementVector()'],['../classCompositeNonlinearIntegrator.html#a0a3c6ccf134c4566218eb3a33861214c',1,'CompositeNonlinearIntegrator::AssembleElementVector()']]]
+  ['a_0',['a',['../namespacelane_emden.html#ac80163d44a9840f3de184f50144a5158',1,'laneEmden']]],
+  ['a_204d_20stellar_20structure_20and_20evolution_20code_1',['4DSSE: A 4D Stellar Structure and Evolution Code',['../index.html',1,'']]],
+  ['a_20polytrope_2',['Solving for a Polytrope',['../index.html#usage_polysolver',1,'']]],
+  ['abar_3',['abar',['../structhelmholtz_1_1_e_o_s_input.html#ad0bf9309ddc7f784eca932a02f0af8b8',1,'helmholtz::EOSInput']]],
+  ['accessing_20physical_20constants_4',['Accessing Physical Constants',['../index.html#usage_constants',1,'']]],
+  ['aion_5',['aion',['../structnn_approx8_1_1_net.html#a3303feacf741779a8389a119c44930c9',1,'nnApprox8::Net']]],
+  ['and_20components_6',['Key Modules and Components',['../index.html#modules_sec',1,'']]],
+  ['and_20contributions_7',['Contact and Contributions',['../index.html#contact_sec',1,'']]],
+  ['and_20evolution_20code_8',['4DSSE: A 4D Stellar Structure and Evolution Code',['../index.html',1,'']]],
+  ['approx8_2ecpp_9',['approx8.cpp',['../approx8_8cpp.html',1,'']]],
+  ['approx8_2eh_10',['approx8.h',['../approx8_8h.html',1,'']]],
+  ['approx8network_11',['Approx8Network',['../classnn_approx8_1_1_approx8_network.html',1,'nnApprox8']]],
+  ['approx8test_12',['approx8Test',['../classapprox8_test.html',1,'']]],
+  ['approx8test_2ecpp_13',['approx8Test.cpp',['../approx8_test_8cpp.html',1,'']]],
+  ['array2d_14',['array2D',['../helm_8h.html#a78b5688d4effa2bab8f6e87e440e7c63',1,'helm.h']]],
+  ['assembleandfinalizeform_15',['assembleAndFinalizeForm',['../class_poly_solver.html#a553333a8520390effad208fcde3deaf0',1,'PolySolver']]],
+  ['assembleblocksystem_16',['assembleBlockSystem',['../class_poly_solver.html#afe38ca0ba610c352f1b8b9463bff947c',1,'PolySolver']]],
+  ['assembleelementgrad_17',['AssembleElementGrad',['../classpoly_m_f_e_m_utils_1_1_nonlinear_power_integrator.html#aa6913e69a87ff759ec59b46d89b8cde2',1,'polyMFEMUtils::NonlinearPowerIntegrator']]],
+  ['assembleelementvector_18',['AssembleElementVector',['../classpoly_m_f_e_m_utils_1_1_nonlinear_power_integrator.html#a4999e49e957ccb3900be9b04466bca5b',1,'polyMFEMUtils::NonlinearPowerIntegrator']]]
 ];

docs/html/search/all_2.js

@@ -1,6 +1,9 @@
 var searchData=
 [
-  ['bilinearintegratorwrapper_4',['BilinearIntegratorWrapper',['../classBilinearIntegratorWrapper.html',1,'BilinearIntegratorWrapper'],['../classBilinearIntegratorWrapper.html#a72155007095c629dfca4f349739e4a18',1,'BilinearIntegratorWrapper::BilinearIntegratorWrapper()']]],
-  ['byteend_5',['byteEnd',['../structTableIndex.html#a69c87fd1cb0b7a64a82c52c54193e5e6',1,'TableIndex']]],
-  ['bytestart_6',['byteStart',['../structTableIndex.html#ad899cf13056eb17b33e1c5e303e10132',1,'TableIndex']]]
+  ['breakpoint_0',['BREAKPOINT',['../debug_8h.html#a48fb4fe58bc76af81a90102d9df506c2',1,'debug.h']]],
+  ['build_5fdof_5fidentification_5fvector_1',['build_dof_identification_vector',['../namespaceserif_1_1utilities.html#a2c487e358a0f49e5712f3ddda6f65322',1,'serif::utilities']]],
+  ['build_5freduced_5fmatrix_2',['build_reduced_matrix',['../namespaceserif_1_1utilities.html#a53f2bbdef6ef2ae6e2189c7ab478e861',1,'serif::utilities']]],
+  ['buildindividualforms_3',['buildIndividualForms',['../class_poly_solver.html#ad458dfdfdbd84bd4aa723d7b82df57da',1,'PolySolver']]],
+  ['building_204dsse_4',['Building 4DSSE',['../index.html#build_sec',1,'']]],
+  ['bytesize_5f_5',['byteSize_',['../class_metadata.html#ac73a509797c98c0d52fb32e1f93e38bc',1,'Metadata']]]
 ];

docs/html/search/all_3.js

@@ -1,25 +1,57 @@
 var searchData=
 [
-  ['calladdtocache_7',['callAddToCache',['../classconfigTestPrivateAccessor.html#adf7f5c651bdd5ca8c12f18a6a0f8a8e9',1,'configTestPrivateAccessor']]],
-  ['callcachesize_8',['callCacheSize',['../classconfigTestPrivateAccessor.html#aaa9517067ef84ab7fb6365536180ce13',1,'configTestPrivateAccessor']]],
-  ['calliskeyincache_9',['callIsKeyInCache',['../classconfigTestPrivateAccessor.html#a6d7d0e1bf82c1917dde20167697a03b1',1,'configTestPrivateAccessor']]],
-  ['callregisterkeynotfound_10',['callRegisterKeyNotFound',['../classconfigTestPrivateAccessor.html#a447eb550ff20700e31bd530b7ca01592',1,'configTestPrivateAccessor']]],
-  ['checkifkeyunknown_11',['CheckIfKeyUnknown',['../classconfigTestPrivateAccessor.html#a4de7c133e8e296d7f9e713aa0b2c4329',1,'configTestPrivateAccessor']]],
-  ['comment_12',['comment',['../structHeader.html#a122331824871070af2c6cebc9698abd8',1,'Header']]],
-  ['compositenonlinearintegrator_13',['CompositeNonlinearIntegrator',['../classCompositeNonlinearIntegrator.html',1,'CompositeNonlinearIntegrator'],['../classCompositeNonlinearIntegrator.html#aba931cf9d57170b7483eed0ade6cd459',1,'CompositeNonlinearIntegrator::CompositeNonlinearIntegrator()']]],
-  ['computechecksum_14',['computeChecksum',['../classOpatIO.html#a6161d6e006312ebd79b037501ade9943',1,'OpatIO::computeChecksum(std::vector< double > index)'],['../classOpatIO.html#af5c52b5d862f5b94ee847c6c791998db',1,'OpatIO::computeChecksum(int tableID)']]],
-  ['computemeshvolume_15',['ComputeMeshVolume',['../meshIOTest_8cpp.html#aa6ba7ddcf2f95334ee7497d22d9f0f25',1,'meshIOTest.cpp']]],
-  ['config_16',['Config',['../classConfig.html',1,'']]],
-  ['config_2ecpp_17',['config.cpp',['../config_8cpp.html',1,'']]],
-  ['config_2eh_18',['config.h',['../config_8h.html',1,'']]],
-  ['configtest_19',['configTest',['../classconfigTest.html',1,'']]],
-  ['configtest_2ecpp_20',['configTest.cpp',['../configTest_8cpp.html',1,'']]],
-  ['configtestprivateaccessor_21',['configTestPrivateAccessor',['../classconfigTestPrivateAccessor.html',1,'']]],
-  ['const_2ecpp_22',['const.cpp',['../const_8cpp.html',1,'']]],
-  ['const_2eh_23',['const.h',['../const_8h.html',1,'']]],
-  ['constant_24',['Constant',['../structConstant.html',1,'Constant'],['../structConstant.html#a84ca5b6951cc8a8eccd083894302a857',1,'Constant::Constant()']]],
-  ['constants_25',['Constants',['../classConstants.html',1,'']]],
-  ['consttest_26',['constTest',['../classconstTest.html',1,'']]],
-  ['consttest_2ecpp_27',['constTest.cpp',['../constTest_8cpp.html',1,'']]],
-  ['creationdate_28',['creationDate',['../structHeader.html#a83f52dffac0449704ef1a50a5e787e92',1,'Header']]]
+  ['c_0',['c',['../namespacelane_emden.html#a9a6068f1948185b2217878595159f26b',1,'laneEmden']]],
+  ['c12a_5frate_1',['c12a_rate',['../namespacenn_approx8.html#a77c285ac81064bdaf0859a8cbf235868',1,'nnApprox8']]],
+  ['c12c12_5frate_2',['c12c12_rate',['../namespacenn_approx8.html#a306d1bf533815b98ea4f6294864de7d8',1,'nnApprox8']]],
+  ['c12o16_5frate_3',['c12o16_rate',['../namespacenn_approx8.html#a09c1f166d7f0f9e943ef4b32c5274b7f',1,'nnApprox8']]],
+  ['c12p_5frate_4',['c12p_rate',['../namespacenn_approx8.html#a7b4f6b355b64ee9722eb76fb454f7845',1,'nnApprox8']]],
+  ['calladdtocache_5',['callAddToCache',['../classconfig_test_private_accessor.html#adf7f5c651bdd5ca8c12f18a6a0f8a8e9',1,'configTestPrivateAccessor']]],
+  ['callcachesize_6',['callCacheSize',['../classconfig_test_private_accessor.html#aaa9517067ef84ab7fb6365536180ce13',1,'configTestPrivateAccessor']]],
+  ['calliskeyincache_7',['callIsKeyInCache',['../classconfig_test_private_accessor.html#a6d7d0e1bf82c1917dde20167697a03b1',1,'configTestPrivateAccessor']]],
+  ['callregisterkeynotfound_8',['callRegisterKeyNotFound',['../classconfig_test_private_accessor.html#a447eb550ff20700e31bd530b7ca01592',1,'configTestPrivateAccessor']]],
+  ['checkifkeyunknown_9',['CheckIfKeyUnknown',['../classconfig_test_private_accessor.html#a4de7c133e8e296d7f9e713aa0b2c4329',1,'configTestPrivateAccessor']]],
+  ['chemical_20compositions_10',['Managing Chemical Compositions',['../index.html#usage_composition',1,'']]],
+  ['chirho_11',['chiRho',['../structhelmholtz_1_1_e_o_s.html#a6f89d6997aa90914cc0a217ee664c2b0',1,'helmholtz::EOS']]],
+  ['chit_12',['chiT',['../structhelmholtz_1_1_e_o_s.html#af4d991fc59359640fcdf7dd9aaf046f6',1,'helmholtz::EOS']]],
+  ['code_13',['4DSSE: A 4D Stellar Structure and Evolution Code',['../index.html',1,'']]],
+  ['coeff_14',['coeff',['../structpolycoeff_1_1x1_interp_coeff.html#a2ed1361bf2f2f2eb2b3cdb192ba9c142',1,'polycoeff::x1InterpCoeff::coeff'],['../structpolycoeff_1_1d_theta_interp_coeff.html#ae6a1aea3ee446ad4090dfcc90ef1bf6f',1,'polycoeff::dThetaInterpCoeff::coeff']]],
+  ['col_5fwidths_5f_15',['col_widths_',['../class_constants.html#ada6a392cd5d3e2914c2736b232a2355a',1,'Constants']]],
+  ['comp_2ecpp_16',['comp.cpp',['../comp_8cpp.html',1,'']]],
+  ['components_17',['Key Modules and Components',['../index.html#modules_sec',1,'']]],
+  ['composition_18',['Composition',['../classcomposition_1_1_composition.html',1,'composition::Composition'],['../classcomposition_1_1_composition.html#a844470d1f13475a0a28b5c1914570357',1,'composition::Composition::Composition()=default'],['../classcomposition_1_1_composition.html#ada296207092ebe33ed599d1712c49633',1,'composition::Composition::Composition(const std::vector< std::string > &symbols)'],['../classcomposition_1_1_composition.html#a46be04b5d28183092dbb29bbd0037fb8',1,'composition::Composition::Composition(const std::set< std::string > &symbols)'],['../classcomposition_1_1_composition.html#a6570edadab8cd37c96a61ec43de6f8ba',1,'composition::Composition::Composition(const std::vector< std::string > &symbols, const std::vector< double > &mass_fractions, bool massFracMode=true)']]],
+  ['composition_19',['composition',['../namespacecomposition.html',1,'composition'],['../structnuclear_network_1_1_net_in.html#a4390cc59d2a9bd0d265163aa6e38c6c2',1,'nuclearNetwork::NetIn::composition'],['../structnuclear_network_1_1_net_out.html#a84c19198ae5cb48527b2d19f61fa160f',1,'nuclearNetwork::NetOut::composition']]],
+  ['composition_2ecpp_20',['composition.cpp',['../composition_8cpp.html',1,'']]],
+  ['composition_2eh_21',['composition.h',['../composition_8h.html',1,'']]],
+  ['compositionentry_22',['CompositionEntry',['../structcomposition_1_1_composition_entry.html',1,'composition::CompositionEntry'],['../structcomposition_1_1_composition_entry.html#af6835e8d2f97e52d76f3704d8db9cd38',1,'composition::CompositionEntry::CompositionEntry()'],['../structcomposition_1_1_composition_entry.html#a6bb77a98088b71a7665912caadcc2e59',1,'composition::CompositionEntry::CompositionEntry(const std::string &symbol, bool massFracMode=true)'],['../structcomposition_1_1_composition_entry.html#a9407ab2732dc35068f4a14eb8a562198',1,'composition::CompositionEntry::CompositionEntry(const CompositionEntry &entry)']]],
+  ['compositions_23',['Managing Chemical Compositions',['../index.html#usage_composition',1,'']]],
+  ['compositiontest_24',['compositionTest',['../classcomposition_test.html',1,'']]],
+  ['compositiontest_2ecpp_25',['compositionTest.cpp',['../composition_test_8cpp.html',1,'']]],
+  ['compute_5fcurl_26',['compute_curl',['../namespaceserif_1_1utilities.html#a6e1a8cf248f13c3d66a24bb7b39cf029',1,'serif::utilities']]],
+  ['computeblockoffsets_27',['computeBlockOffsets',['../class_poly_solver.html#ad69d4ff9b5b56e0654f8e082a210c613',1,'PolySolver']]],
+  ['computemeshvolume_28',['ComputeMeshVolume',['../mesh_i_o_test_8cpp.html#aa6ba7ddcf2f95334ee7497d22d9f0f25',1,'meshIOTest.cpp']]],
+  ['config_29',['Config',['../class_config.html',1,'']]],
+  ['config_2ecpp_30',['config.cpp',['../config_8cpp.html',1,'']]],
+  ['config_2eh_31',['config.h',['../config_8h.html',1,'']]],
+  ['config_5ffilename_32',['CONFIG_FILENAME',['../poly_test_8cpp.html#a355ce39014e2371f32c994670916c1fc',1,'polyTest.cpp']]],
+  ['configtest_33',['configTest',['../classconfig_test.html',1,'']]],
+  ['configtest_2ecpp_34',['configTest.cpp',['../config_test_8cpp.html',1,'']]],
+  ['configtestprivateaccessor_35',['configTestPrivateAccessor',['../classconfig_test_private_accessor.html',1,'']]],
+  ['configuration_20management_36',['Configuration Management',['../index.html#usage_config',1,'']]],
+  ['const_2ecpp_37',['const.cpp',['../const_8cpp.html',1,'']]],
+  ['const_2eh_38',['const.h',['../const_8h.html',1,'']]],
+  ['constant_39',['Constant',['../struct_constant.html',1,'Constant'],['../struct_constant.html#a84ca5b6951cc8a8eccd083894302a857',1,'Constant::Constant()']]],
+  ['constants_40',['Constants',['../index.html#usage_constants',1,'Accessing Physical Constants'],['../class_constants.html',1,'Constants'],['../class_constants.html#af395b3c1d6f0577f4880a21a257aa1db',1,'Constants::Constants()']]],
+  ['constants_5f_41',['constants_',['../class_constants.html#a095db9a742d6180556d1138ebbcddc8c',1,'Constants']]],
+  ['construct_5fjacobian_5fconstant_5fterms_42',['construct_jacobian_constant_terms',['../class_polytrope_operator.html#a45844aac69f5b441f015b9b76ac453d6',1,'PolytropeOperator']]],
+  ['construct_5fmatrix_5frepresentations_43',['construct_matrix_representations',['../class_polytrope_operator.html#a0a22ba7589125309e40cbf8180404e5a',1,'PolytropeOperator']]],
+  ['construct_5freduced_5fblock_5foffsets_44',['construct_reduced_block_offsets',['../class_polytrope_operator.html#a961d9dc73ba632e20266ede59c9503c2',1,'PolytropeOperator']]],
+  ['consttest_45',['constTest',['../classconst_test.html',1,'']]],
+  ['consttest_2ecpp_46',['constTest.cpp',['../const_test_8cpp.html',1,'']]],
+  ['contact_20and_20contributions_47',['Contact and Contributions',['../index.html#contact_sec',1,'']]],
+  ['contributions_48',['Contact and Contributions',['../index.html#contact_sec',1,'']]],
+  ['convert_5fnetin_49',['convert_netIn',['../classnn_approx8_1_1_approx8_network.html#af6bd9b6c9b4c3f344ae6b8fcce1b3659',1,'nnApprox8::Approx8Network']]],
+  ['cp_50',['cP',['../structhelmholtz_1_1_e_o_s.html#afe74ec34a65d3dfb222dc56a89c37fa1',1,'helmholtz::EOS']]],
+  ['createresource_51',['createResource',['../resource_manager_types_8cpp.html#ae0a43e40a0c5e0fd54274c9cd8688d19',1,'createResource(const std::string &type, const std::string &path): resourceManagerTypes.cpp'],['../resource_manager_types_8h.html#ae0a43e40a0c5e0fd54274c9cd8688d19',1,'createResource(const std::string &type, const std::string &path): resourceManagerTypes.cpp']]],
+  ['csound_52',['csound',['../structhelmholtz_1_1_e_o_s.html#a7ff100c0f3f66db73a424277ee1d84f3',1,'helmholtz::EOS']]],
+  ['cv_53',['cV',['../structhelmholtz_1_1_e_o_s.html#a41bb263abe642a7db728a82e7260cb93',1,'helmholtz::EOS']]]
 ];

docs/html/search/all_4.js

@@ -1,11 +1,64 @@
 var searchData=
 [
-  ['datatype_29',['DataType',['../classDObject.html#a79a2ecac4130ef3df272bdfeed26a620',1,'DObject']]],
-  ['datatypemap_30',['dataTypeMap',['../classDObject.html#a358d5f015da09ae5f0cbb46f3fd9e401',1,'DObject']]],
-  ['defaultobject_31',['defaultObject',['../classDObjectTest.html#ac753942590ae6ee456e6f3dd8b205df2',1,'DObjectTest']]],
-  ['dobject_32',['DObject',['../classDObject.html',1,'DObject'],['../classDObject.html#a0ae54853e18265657296bfb5ac3bf9d0',1,'DObject::DObject()'],['../classDObject.html#a598321f3b8524b98df72393c04d7470c',1,'DObject::DObject(const DataType &data)']]],
-  ['dobject_2ecpp_33',['DObject.cpp',['../DObject_8cpp.html',1,'']]],
-  ['dobject_2eh_34',['DObject.h',['../DObject_8h.html',1,'']]],
-  ['dobjecttest_35',['DObjectTest',['../classDObjectTest.html',1,'']]],
-  ['dobjecttest_2ecpp_36',['DObjectTest.cpp',['../DObjectTest_8cpp.html',1,'']]]
+  ['d_0',['D',['../structform_bundle.html#afb8d1cb4cfb97e8d84164553505400d5',1,'formBundle']]],
+  ['d_1',['d',['../structhelmholtz_1_1_h_e_l_m_table.html#af95c990382e78a2b4fb20ed2225ce392',1,'helmholtz::HELMTable']]],
+  ['data_5f_2',['data_',['../class_d_object.html#ad7ba02f6d87ce64792149096f3310b21',1,'DObject']]],
+  ['datatype_3',['DataType',['../class_d_object.html#a55b7cdac36a3a518ba6e1ecef0e25dcd',1,'DObject']]],
+  ['datatype_5f_4',['dataType_',['../class_metadata.html#a290205e5f46416dd0f48bd6ff62888ac',1,'Metadata']]],
+  ['datatypemap_5',['dataTypeMap',['../class_d_object.html#a358d5f015da09ae5f0cbb46f3fd9e401',1,'DObject']]],
+  ['dd2_5fsav_6',['dd2_sav',['../structhelmholtz_1_1_h_e_l_m_table.html#a42eb94b05893cf752f1e566c3496ddbe',1,'helmholtz::HELMTable']]],
+  ['dd_5fsav_7',['dd_sav',['../structhelmholtz_1_1_h_e_l_m_table.html#accb622615ab4c5432bac307c1ea9ca76',1,'helmholtz::HELMTable']]],
+  ['ddi_5fsav_8',['ddi_sav',['../structhelmholtz_1_1_h_e_l_m_table.html#a54eceeaf3fa2f2fa3fe4b06c60c93ee9',1,'helmholtz::HELMTable']]],
+  ['ddpsi0_9',['ddpsi0',['../namespacehelmholtz.html#afb12b8ccdd5491440542d69cd81bcb55',1,'helmholtz']]],
+  ['ddpsi1_10',['ddpsi1',['../namespacehelmholtz.html#a73dce1f6c33b646d29ea6b746beed652',1,'helmholtz']]],
+  ['ddpsi2_11',['ddpsi2',['../namespacehelmholtz.html#a45b09d3473306d955bc45cf11df44a11',1,'helmholtz']]],
+  ['debug_2eh_12',['debug.h',['../debug_8h.html',1,'']]],
+  ['debugenabled_5f_13',['debugEnabled_',['../class_d_object.html#accf5c10d4afc3969607e11b0055312d5',1,'DObject']]],
+  ['debugflag_5f_14',['debugFlag_',['../class_metadata.html#a65fd506f1bd41699d9cd19bc0dfc9701',1,'Metadata']]],
+  ['defaultobject_15',['defaultObject',['../class_d_object_test.html#ac753942590ae6ee456e6f3dd8b205df2',1,'DObjectTest']]],
+  ['denerda_16',['denerda',['../structhelmholtz_1_1_e_o_s.html#a1dd1a303671ccd229581e206ee8179b2',1,'helmholtz::EOS']]],
+  ['denerdd_17',['denerdd',['../structhelmholtz_1_1_e_o_s.html#afc03c373412cb7700696a9cdd4c790cf',1,'helmholtz::EOS']]],
+  ['denerdt_18',['denerdt',['../structhelmholtz_1_1_e_o_s.html#acc528281ace51f28dcf876ec3cfc860f',1,'helmholtz::EOS']]],
+  ['denerdz_19',['denerdz',['../structhelmholtz_1_1_e_o_s.html#aabb4e5356a1f83cb18489ccd860a74f5',1,'helmholtz::EOS']]],
+  ['density_20',['density',['../structnuclear_network_1_1_net_in.html#a987cb42b169b0e503515a8c62e242b97',1,'nuclearNetwork::NetIn']]],
+  ['dentrda_21',['dentrda',['../structhelmholtz_1_1_e_o_s.html#a6bed48eed316e6af9124b8f4f14d6833',1,'helmholtz::EOS']]],
+  ['dentrdd_22',['dentrdd',['../structhelmholtz_1_1_e_o_s.html#a48739687f1a620368e7526242666b8fe',1,'helmholtz::EOS']]],
+  ['dentrdt_23',['dentrdt',['../structhelmholtz_1_1_e_o_s.html#a8096e0185b3fd660cd115de6c0340abb',1,'helmholtz::EOS']]],
+  ['dentrdz_24',['dentrdz',['../structhelmholtz_1_1_e_o_s.html#ab0e9d3245ee686b471e9d0e49c8870b9',1,'helmholtz::EOS']]],
+  ['deprecation_5fwarning_5foff_25',['DEPRECATION_WARNING_OFF',['../warning__control_8h.html#a4101250c61feebb5d110c809fe7a2151',1,'warning_control.h']]],
+  ['deprecation_5fwarning_5fon_26',['DEPRECATION_WARNING_ON',['../warning__control_8h.html#aaab638127f083dc583d9ea4afe6cfc5f',1,'warning_control.h']]],
+  ['development_27',['Future Development',['../index.html#future_dev',1,'']]],
+  ['dfmod_28',['dfmod',['../namespacepoly_m_f_e_m_utils.html#a6aa65cbcd9af83e05c34fbd8428c335c',1,'polyMFEMUtils']]],
+  ['dhi_29',['dhi',['../namespacehelmholtz.html#a25b740f248ffeeffccefab25de64f0ee',1,'helmholtz']]],
+  ['diffusioncoeff_30',['diffusionCoeff',['../namespacepolycoeff.html#a1c9b910e2fb3363c13bb8ebf2fb98f09',1,'polycoeff']]],
+  ['dimensions_5f_31',['dimensions_',['../class_metadata.html#a163f74d4ef9ecd13a34e7e9cab2e21ce',1,'Metadata']]],
+  ['dlo_32',['dlo',['../namespacehelmholtz.html#a8c59343e6debfa120fbc8ebfd740fe76',1,'helmholtz']]],
+  ['dobject_33',['DObject',['../class_d_object.html',1,'DObject'],['../class_d_object.html#a0ae54853e18265657296bfb5ac3bf9d0',1,'DObject::DObject()'],['../class_d_object.html#a598321f3b8524b98df72393c04d7470c',1,'DObject::DObject(const DataType &data)']]],
+  ['dobject_2ecpp_34',['DObject.cpp',['../_d_object_8cpp.html',1,'']]],
+  ['dobject_2eh_35',['DObject.h',['../_d_object_8h.html',1,'']]],
+  ['dobjecttest_36',['DObjectTest',['../class_d_object_test.html',1,'']]],
+  ['dobjecttest_2ecpp_37',['DObjectTest.cpp',['../_d_object_test_8cpp.html',1,'']]],
+  ['dp_5frate_38',['dp_rate',['../namespacenn_approx8.html#a4b667550e45632fd9659d0ba61fb1733',1,'nnApprox8']]],
+  ['dpdf_39',['dpdf',['../structhelmholtz_1_1_h_e_l_m_table.html#a4135cf7c9662ba24b721efaf9f9b7a54',1,'helmholtz::HELMTable']]],
+  ['dpdfd_40',['dpdfd',['../structhelmholtz_1_1_h_e_l_m_table.html#aed06207df8ffc9b1b3a0c1743b8b9def',1,'helmholtz::HELMTable']]],
+  ['dpdfdt_41',['dpdfdt',['../structhelmholtz_1_1_h_e_l_m_table.html#a46b8f7f115f3087b5d3ed2b7faa85ca4',1,'helmholtz::HELMTable']]],
+  ['dpdft_42',['dpdft',['../structhelmholtz_1_1_h_e_l_m_table.html#a62198deb22b22231986626e9783eddd5',1,'helmholtz::HELMTable']]],
+  ['dpe_43',['dpe',['../structhelmholtz_1_1_e_o_s.html#ac76d7a5dd193aa4c0118af3abb502267',1,'helmholtz::EOS']]],
+  ['dpresda_44',['dpresda',['../structhelmholtz_1_1_e_o_s.html#a90c0edabc4ec77eda96a5be15b6c0c60',1,'helmholtz::EOS']]],
+  ['dpresdd_45',['dpresdd',['../structhelmholtz_1_1_e_o_s.html#a43886274bb32bf147aefd6ebe688fcca',1,'helmholtz::EOS']]],
+  ['dpresdt_46',['dpresdt',['../structhelmholtz_1_1_e_o_s.html#aaf0bc97c93bf89d74b8ecbfaa3764ff5',1,'helmholtz::EOS']]],
+  ['dpresdz_47',['dpresdz',['../structhelmholtz_1_1_e_o_s.html#a2aa1892e07d7830da78689410b0343ab',1,'helmholtz::EOS']]],
+  ['dpsi0_48',['dpsi0',['../namespacehelmholtz.html#a1eb81e38cac69acdff0c72bfbdfa0a49',1,'helmholtz']]],
+  ['dpsi1_49',['dpsi1',['../namespacehelmholtz.html#a90f0e41668ae5e2827292892db0be33c',1,'helmholtz']]],
+  ['dpsi2_50',['dpsi2',['../namespacehelmholtz.html#a9638e40279f8a986ab000a1628fb4119',1,'helmholtz']]],
+  ['dse_51',['dse',['../structhelmholtz_1_1_e_o_s.html#a7c0ba282c8ab3daa5f0af8fbf81f61e0',1,'helmholtz::EOS']]],
+  ['dsp_52',['dsp',['../structhelmholtz_1_1_e_o_s.html#a6e93efb7d5981b690e95be438f7e552c',1,'helmholtz::EOS']]],
+  ['dstp_53',['dstp',['../namespacehelmholtz.html#a84622ce36e33370b8dc8d9a5df527e04',1,'helmholtz']]],
+  ['dstpi_54',['dstpi',['../namespacehelmholtz.html#a36eae093854dacb5e19b062a780ef6e3',1,'helmholtz']]],
+  ['dt0_55',['dt0',['../structnuclear_network_1_1_net_in.html#aa55b1d6cd458b69afb89cb096e661d9b',1,'nuclearNetwork::NetIn']]],
+  ['dt2_5fsav_56',['dt2_sav',['../structhelmholtz_1_1_h_e_l_m_table.html#a17c96d4c325e937bae0bf441daed14fc',1,'helmholtz::HELMTable']]],
+  ['dt2i_5fsav_57',['dt2i_sav',['../structhelmholtz_1_1_h_e_l_m_table.html#a8a496f02754d9c9bb0366cc64b979e10',1,'helmholtz::HELMTable']]],
+  ['dt_5fsav_58',['dt_sav',['../structhelmholtz_1_1_h_e_l_m_table.html#a83eec62d8285d9d4a83ebb3267d329c4',1,'helmholtz::HELMTable']]],
+  ['dthetainterpcoeff_59',['dThetaInterpCoeff',['../structpolycoeff_1_1d_theta_interp_coeff.html',1,'polycoeff']]],
+  ['dti_5fsav_60',['dti_sav',['../structhelmholtz_1_1_h_e_l_m_table.html#aeb904c0367b607db45c3dc633b44e17e',1,'helmholtz::HELMTable']]]
 ];

docs/html/search/all_5.js

@@ -1,5 +1,27 @@
 var searchData=
 [
-  ['example_5ffilename_37',['EXAMPLE_FILENAME',['../configTest_8cpp.html#a2f358f231bffa8eaaa670ec1db93a470',1,'EXAMPLE_FILENAME(): configTest.cpp'],['../meshIOTest_8cpp.html#a2f358f231bffa8eaaa670ec1db93a470',1,'EXAMPLE_FILENAME(): meshIOTest.cpp'],['../opatIOTest_8cpp.html#a2f358f231bffa8eaaa670ec1db93a470',1,'EXAMPLE_FILENAME(): opatIOTest.cpp']]],
-  ['export_5fsymbol_38',['EXPORT_SYMBOL',['../Metadata_8h.html#ab57c319c35ea0fbacf781f2ecb3a4339',1,'Metadata.h']]]
+  ['ef_0',['ef',['../structhelmholtz_1_1_h_e_l_m_table.html#a4827e6e44936342d7e4f7b0dc4108c2c',1,'helmholtz::HELMTable']]],
+  ['efd_1',['efd',['../structhelmholtz_1_1_h_e_l_m_table.html#a3f64f6e59edf180a08e1d12099aacc36',1,'helmholtz::HELMTable']]],
+  ['efdt_2',['efdt',['../structhelmholtz_1_1_h_e_l_m_table.html#a5ceda8bce85539d33ecc8490cae79b89',1,'helmholtz::HELMTable']]],
+  ['eft_3',['eft',['../structhelmholtz_1_1_h_e_l_m_table.html#a8af3817554a4163d5fda231fcb0120f1',1,'helmholtz::HELMTable']]],
+  ['egas_4',['egas',['../structhelmholtz_1_1_e_o_s.html#a84cb411ea78cf80e2d766fc8506ed289',1,'helmholtz::EOS']]],
+  ['energy_5',['energy',['../structnuclear_network_1_1_net_in.html#a137d9ee9c0430a8431e73e23b56b6262',1,'nuclearNetwork::NetIn::energy'],['../structnuclear_network_1_1_net_out.html#a380030ff17ec877c6f1134a820bf2163',1,'nuclearNetwork::NetOut::energy']]],
+  ['eos_6',['EOS',['../structhelmholtz_1_1_e_o_s.html',1,'helmholtz::EOS'],['../index.html#usage_eos',1,'Equation of State (EOS)']]],
+  ['eosinput_7',['EOSInput',['../structhelmholtz_1_1_e_o_s_input.html',1,'helmholtz']]],
+  ['eosio_8',['EosIO',['../class_eos_i_o.html',1,'EosIO'],['../class_eos_i_o.html#ad721f72b591f1ef4b7fa87668e8d8b34',1,'EosIO::EosIO()']]],
+  ['eosio_2ecpp_9',['eosIO.cpp',['../eos_i_o_8cpp.html',1,'']]],
+  ['eosio_2eh_10',['eosIO.h',['../eos_i_o_8h.html',1,'']]],
+  ['eostable_11',['EOSTable',['../eos_i_o_8h.html#a1aa7735934336ab2646c539c4370dcd5',1,'eosIO.h']]],
+  ['eostest_12',['eosTest',['../classeos_test.html',1,'']]],
+  ['eostest_2ecpp_13',['eosTest.cpp',['../eos_test_8cpp.html',1,'']]],
+  ['equation_20of_20state_20eos_14',['Equation of State (EOS)',['../index.html#usage_eos',1,'']]],
+  ['erad_15',['erad',['../structhelmholtz_1_1_e_o_s.html#a8b3865f0c062652b7c4889783903fa92',1,'helmholtz::EOS']]],
+  ['errorcode_5f_16',['errorCode_',['../class_d_object.html#ad8de5890e8dae5fc7e72fabca2520fc3',1,'DObject']]],
+  ['etaele_17',['etaele',['../structhelmholtz_1_1_e_o_s.html#aa62deea3e7c4b43e9abc9419fb3732fe',1,'helmholtz::EOS']]],
+  ['etot_18',['etot',['../structhelmholtz_1_1_e_o_s.html#a1aa2caf18b3701c6f9515fd9f56d9a97',1,'helmholtz::EOS']]],
+  ['evaluate_19',['evaluate',['../classnn_approx8_1_1_approx8_network.html#a31b8a20338d18123eca6e644f6e72366',1,'nnApprox8::Approx8Network::evaluate()'],['../classnuclear_network_1_1_network.html#aaa7fe5e69bd45e268c815aa8919966f1',1,'nuclearNetwork::Network::evaluate()']]],
+  ['evolution_20code_20',['4DSSE: A 4D Stellar Structure and Evolution Code',['../index.html',1,'']]],
+  ['example_5ffilename_21',['EXAMPLE_FILENAME',['../composition_test_8cpp.html#a2f358f231bffa8eaaa670ec1db93a470',1,'EXAMPLE_FILENAME: compositionTest.cpp'],['../config_test_8cpp.html#a2f358f231bffa8eaaa670ec1db93a470',1,'EXAMPLE_FILENAME: configTest.cpp'],['../mesh_i_o_test_8cpp.html#a2f358f231bffa8eaaa670ec1db93a470',1,'EXAMPLE_FILENAME: meshIOTest.cpp']]],
+  ['examples_22',['High-Level Usage Examples',['../index.html#usage_sec',1,'']]],
+  ['export_5fsymbol_23',['EXPORT_SYMBOL',['../_metadata_8h.html#ab57c319c35ea0fbacf781f2ecb3a4339',1,'Metadata.h']]]
 ];

docs/html/search/all_6.js

@@ -1,18 +1,20 @@
 var searchData=
 [
-  ['get_39',['get',['../classLockableDObject.html#adcfe201fc728cc1c6fcf638a566ba9a1',1,'LockableDObject::get()'],['../classConstants.html#a36ddd7fe6857d1bbf6d1c84d4ed7bc19',1,'Constants::get()']]],
-  ['getbytesize_40',['getByteSize',['../classMetadata.html#ac7980d1efdd6ae434f0115f83d08348e',1,'Metadata']]],
-  ['getdata_41',['getData',['../classDObject.html#a4862655c3634d019b0a45b811d6f7235',1,'DObject']]],
-  ['getdataas_42',['getDataAs',['../classDObject.html#aca2db093c1c8c6f7893de07544aed619',1,'DObject']]],
-  ['getdatatype_43',['getDataType',['../classMetadata.html#aeed7f22ccc61d9a3d6425441d381dcdc',1,'Metadata']]],
-  ['getdimensions_44',['getDimensions',['../classMetadata.html#a412c0c0b8754d85f9edbbdcd637f3b20',1,'Metadata']]],
-  ['geterrorcode_45',['getErrorCode',['../classDObject.html#afa8926d916081de72478cb8813c25e98',1,'DObject']]],
-  ['getheader_46',['getHeader',['../classOpatIO.html#afe725b647bc5bb802f6d711fc5dca3ab',1,'OpatIO']]],
-  ['getinstance_47',['getInstance',['../classConstants.html#aaa6f3af20fa563cf22df71a987923065',1,'Constants']]],
-  ['getmaxqdepth_48',['getMaxQDepth',['../classOpatIO.html#a48cd5e4f3fdb221bc1b6253e149e8e01',1,'OpatIO']]],
-  ['getmesh_49',['GetMesh',['../classMeshIO.html#a3e4bccff08abf9a28b3d64c8fb9f7317',1,'MeshIO']]],
-  ['getnumindex_50',['getNumIndex',['../classOpatIO.html#a8f7cc9a4ec8845c22df330678afd29c6',1,'OpatIO']]],
-  ['getopatversion_51',['getOPATVersion',['../classOpatIO.html#a2894437c09f4cdb06c9b06d6aad4bd2f',1,'OpatIO']]],
-  ['gettable_52',['getTable',['../classOpatIO.html#a5c35b863873239e023427864ed016f58',1,'OpatIO']]],
-  ['gettableindex_53',['getTableIndex',['../classOpatIO.html#af0bc6bb210c4ff74bc1e043aeb252e1a',1,'OpatIO::getTableIndex()'],['../classOpatIO.html#a408b7f7d58d4a49636220f0431813dad',1,'OpatIO::getTableIndex(std::vector< double > index)']]]
+  ['f_0',['f',['../structhelmholtz_1_1_h_e_l_m_table.html#a1f0eee19faf7a51cbeadbd6733471f6c',1,'helmholtz::HELMTable::f'],['../structform_bundle.html#ab63a99eee55a078559cbea6b197afbff',1,'formBundle::f']]],
+  ['fd_1',['fd',['../structhelmholtz_1_1_h_e_l_m_table.html#aaf2a41f3d48dadb2800f4dc386574221',1,'helmholtz::HELMTable']]],
+  ['fdd_2',['fdd',['../structhelmholtz_1_1_h_e_l_m_table.html#ad6baf7c5cabdddd7a4e867bdabb49c91',1,'helmholtz::HELMTable']]],
+  ['fddt_3',['fddt',['../structhelmholtz_1_1_h_e_l_m_table.html#a8c50a283acf9ba2299aa88aefe0275e2',1,'helmholtz::HELMTable']]],
+  ['fddtt_4',['fddtt',['../structhelmholtz_1_1_h_e_l_m_table.html#a7ab29a0e887f19a2effd135a6a0b9cfe',1,'helmholtz::HELMTable']]],
+  ['fdt_5',['fdt',['../structhelmholtz_1_1_h_e_l_m_table.html#a94f4903b7fac0f44758be51202927d92',1,'helmholtz::HELMTable']]],
+  ['fdtt_6',['fdtt',['../structhelmholtz_1_1_h_e_l_m_table.html#a260b29a89af730b2ebd750af250645da',1,'helmholtz::HELMTable']]],
+  ['finalize_7',['finalize',['../classcomposition_1_1_composition.html#a5547fe9d6154e10a7406d8a06d969462',1,'composition::Composition::finalize()'],['../class_polytrope_operator.html#ac7ebc4ae1c34e1569281be028e4daec1',1,'PolytropeOperator::finalize()']]],
+  ['finalizemassfracmode_8',['finalizeMassFracMode',['../classcomposition_1_1_composition.html#ae2b5392ad8acd0ab8e17d8452b35aa86',1,'composition::Composition']]],
+  ['finalizenumberfracmode_9',['finalizeNumberFracMode',['../classcomposition_1_1_composition.html#a8a3aec6d7f2f6cb4f91105740c15ffc8',1,'composition::Composition']]],
+  ['findcenterelement_10',['findCenterElement',['../class_poly_solver.html#a77455ce3505d93f7b5b5d3e9447bbe23',1,'PolySolver']]],
+  ['fmod_11',['fmod',['../namespacepoly_m_f_e_m_utils.html#a3b99f87291c525582b460ffdc4e2c220',1,'polyMFEMUtils']]],
+  ['for_20a_20polytrope_12',['Solving for a Polytrope',['../index.html#usage_polysolver',1,'']]],
+  ['formbundle_13',['formBundle',['../structform_bundle.html',1,'']]],
+  ['ft_14',['ft',['../structhelmholtz_1_1_h_e_l_m_table.html#a7c56683836717e62ea098ea6ab5e094e',1,'helmholtz::HELMTable']]],
+  ['ftt_15',['ftt',['../structhelmholtz_1_1_h_e_l_m_table.html#a25bdc8a0e265bac2e47f18e2fa3e35ba',1,'helmholtz::HELMTable']]],
+  ['future_20development_16',['Future Development',['../index.html#future_dev',1,'']]]
 ];

docs/html/search/all_7.js

@@ -1,6 +1,51 @@
 var searchData=
 [
-  ['has_54',['has',['../classConstants.html#a2aa041fd223f259e55bf098c90581039',1,'Constants']]],
-  ['header_55',['Header',['../structHeader.html',1,'']]],
-  ['headersize_56',['headerSize',['../structHeader.html#af0bdf31defd5888cc8d2f7537e687917',1,'Header']]]
+  ['gamma1_0',['gamma1',['../structhelmholtz_1_1_e_o_s.html#a3674b3150d86aeba59ba0c9381aafbb1',1,'helmholtz::EOS']]],
+  ['gamma2_1',['gamma2',['../structhelmholtz_1_1_e_o_s.html#aa739739139e5a1038b0f19007bcfe6f1',1,'helmholtz::EOS']]],
+  ['gamma3_2',['gamma3',['../structhelmholtz_1_1_e_o_s.html#afadcfad69d383e9c8e6715148c2e93b6',1,'helmholtz::EOS']]],
+  ['get_3',['get',['../class_constants.html#a36ddd7fe6857d1bbf6d1c84d4ed7bc19',1,'Constants::get()'],['../class_lockable_d_object.html#adcfe201fc728cc1c6fcf638a566ba9a1',1,'LockableDObject::get()']]],
+  ['get_5fblock_5foffsets_4',['get_block_offsets',['../class_polytrope_operator.html#a2a7f200a45cff11897470de39a302f93',1,'PolytropeOperator']]],
+  ['get_5fessential_5ftrue_5fdofs_5',['get_essential_true_dofs',['../class_polytrope_operator.html#a1bf3ced83363a1318258ae0f5bfeb57e',1,'PolytropeOperator']]],
+  ['get_5ffree_5fdofs_6',['get_free_dofs',['../class_polytrope_operator.html#ab5577c71be2bdb0f82daefd2631b8cb1',1,'PolytropeOperator']]],
+  ['get_5fhelm_5feos_7',['get_helm_EOS',['../namespacehelmholtz.html#ad2176033ca3ac4e5dc65f281477b94c2',1,'helmholtz']]],
+  ['get_5fjacobian_5foperator_8',['get_jacobian_operator',['../class_polytrope_operator.html#ac05cd1bd6b0a2b2502af9d8a6b86077c',1,'PolytropeOperator']]],
+  ['get_5fpreconditioner_9',['get_preconditioner',['../class_polytrope_operator.html#a7789efbb8ba3a09a0975475518b4b611',1,'PolytropeOperator']]],
+  ['get_5freduced_5fblock_5foffsets_10',['get_reduced_block_offsets',['../class_polytrope_operator.html#acc69c13a7178c25af2ff5c339cbb1c67',1,'PolytropeOperator']]],
+  ['get_5freduced_5fsystem_5fsize_11',['get_reduced_system_size',['../class_polytrope_operator.html#afbcb03cce5e5da376163a7dd89216400',1,'PolytropeOperator']]],
+  ['get_5ft9_5farray_12',['get_T9_array',['../namespacenn_approx8.html#a4c456c6d41b33d7b5c9e6520ec002e0e',1,'nnApprox8']]],
+  ['getavaliableresources_13',['getAvaliableResources',['../class_resource_manager.html#a77243baf9aa96d5f3c1635f8a34b48b5',1,'ResourceManager']]],
+  ['getbytesize_14',['getByteSize',['../class_metadata.html#ac7980d1efdd6ae434f0115f83d08348e',1,'Metadata']]],
+  ['getcomposition_15',['getComposition',['../classcomposition_1_1_composition.html#a41df148cfdc1253a87f64c8874763e80',1,'composition::Composition::getComposition(const std::string &symbol) const'],['../classcomposition_1_1_composition.html#ae38c20ab0819669f3d6fbefbf8a2fa7c',1,'composition::Composition::getComposition() const']]],
+  ['getdata_16',['getData',['../class_d_object.html#a4862655c3634d019b0a45b811d6f7235',1,'DObject']]],
+  ['getdataas_17',['getDataAs',['../class_d_object.html#aca2db093c1c8c6f7893de07544aed619',1,'DObject']]],
+  ['getdatatype_18',['getDataType',['../class_metadata.html#aeed7f22ccc61d9a3d6425441d381dcdc',1,'Metadata']]],
+  ['getdimensions_19',['getDimensions',['../class_metadata.html#a412c0c0b8754d85f9edbbdcd637f3b20',1,'Metadata']]],
+  ['getdofcoordinates_20',['GetDofCoordinates',['../class_poly_solver.html#ae80ad90a3f632683e38ae03cb4b8e12b',1,'PolySolver']]],
+  ['geterrorcode_21',['getErrorCode',['../class_d_object.html#afa8926d916081de72478cb8813c25e98',1,'DObject']]],
+  ['getessentialtruedof_22',['getEssentialTrueDof',['../class_poly_solver.html#a45cc1921d9e385b31406b00d750d9a8b',1,'PolySolver']]],
+  ['getfirstsegment_23',['getFirstSegment',['../resource_manager_types_8cpp.html#a3adea101b1d749fb0eaee2e91b7e10fe',1,'getFirstSegment(const std::string &input): resourceManagerTypes.cpp'],['../resource_manager_types_8h.html#a3adea101b1d749fb0eaee2e91b7e10fe',1,'getFirstSegment(const std::string &input): resourceManagerTypes.cpp']]],
+  ['getformat_24',['getFormat',['../class_eos_i_o.html#add10f91411e996844a14979d12d107b7',1,'EosIO']]],
+  ['getgradient_25',['GetGradient',['../class_polytrope_operator.html#af0324f7a83083306158bb8740fdf4379',1,'PolytropeOperator']]],
+  ['getinstance_26',['getInstance',['../class_constants.html#ab302ea5420378c55a9e5f116d19ae0e2',1,'Constants::getInstance()'],['../class_probe_1_1_log_manager.html#adddabc01655308e7e62d8d3bd1b15386',1,'Probe::LogManager::getInstance()'],['../class_resource_manager.html#ad4dd8ab7ad458929de4a60128079af98',1,'ResourceManager::getInstance()']]],
+  ['getlastline_27',['getLastLine',['../probe_test_8cpp.html#a6181751ac1c7f7f38b548af87ad506ab',1,'probeTest.cpp']]],
+  ['getlogger_28',['getLogger',['../class_probe_1_1_log_manager.html#a5a12a541a9a7ca7f848ff385fb729c1d',1,'Probe::LogManager']]],
+  ['getloggernames_29',['getLoggerNames',['../class_probe_1_1_log_manager.html#a91daa688d52850bcf857fe638e9f421d',1,'Probe::LogManager']]],
+  ['getloggers_30',['getLoggers',['../class_probe_1_1_log_manager.html#a627ffe6b758ad69e77a7033f28bd7dbd',1,'Probe::LogManager']]],
+  ['getmassfracmode_31',['getMassFracMode',['../structcomposition_1_1_composition_entry.html#aa715e35857d200dd69a0e777afb312e0',1,'composition::CompositionEntry']]],
+  ['getmassfraction_32',['getMassFraction',['../classcomposition_1_1_composition.html#a205d51c7455bdf7069de1794315954aa',1,'composition::Composition::getMassFraction() const'],['../classcomposition_1_1_composition.html#a9cca346916b1bb733a3de915dce10ccb',1,'composition::Composition::getMassFraction(const std::string &symbol) const']]],
+  ['getmesh_33',['GetMesh',['../class_mesh_i_o.html#a12d2876be0d000aaaa6e5cd6d6a758af',1,'MeshIO']]],
+  ['getmesh_34',['getMesh',['../class_poly_solver.html#a7959fe89ce2753b262f1e5b1a1b7fd4e',1,'PolySolver']]],
+  ['getmeshradius_35',['getMeshRadius',['../namespace_probe.html#a7f82da2ba203b4c8ddabe66105518ab5',1,'Probe']]],
+  ['getn_36',['getN',['../class_poly_solver.html#afdb769d3ee9e0929c16a68eb71630f23',1,'PolySolver']]],
+  ['getnumberfraction_37',['getNumberFraction',['../classcomposition_1_1_composition.html#aa75453fd563e3f50dee316879df01968',1,'composition::Composition::getNumberFraction(const std::string &symbol) const'],['../classcomposition_1_1_composition.html#a0990e41edd2ad138e844fea0962c8278',1,'composition::Composition::getNumberFraction() const']]],
+  ['getorder_38',['getOrder',['../class_poly_solver.html#aea184d88d7c450b03682f61565541d72',1,'PolySolver']]],
+  ['getraysolution_39',['getRaySolution',['../namespace_probe.html#ad9b811b23f12083ece6f4e6dbe2dcdd7',1,'Probe::getRaySolution(mfem::GridFunction &u, mfem::Mesh &mesh, const std::vector< double > &rayDirection, int numSamples, std::string filename)'],['../namespace_probe.html#a79200561b55e113bf48db25def08ab71',1,'Probe::getRaySolution(mfem::Vector &vec, mfem::FiniteElementSpace &fes, const std::vector< double > &rayDirection, int numSamples, std::string filename)']]],
+  ['getregisteredsymbols_40',['getRegisteredSymbols',['../classcomposition_1_1_composition.html#affaeabe495474b82951786591ead8026',1,'composition::Composition']]],
+  ['getresource_41',['getResource',['../class_resource_manager.html#a203619e5da7f2bef6cbe13326d41eda4',1,'ResourceManager']]],
+  ['getsolution_42',['getSolution',['../class_poly_solver.html#aa2baea44320e302f543ed6fad5e0d6a2',1,'PolySolver']]],
+  ['gettable_43',['getTable',['../class_eos_i_o.html#ad7484ed459d8479381f4fb288597cbeb',1,'EosIO']]],
+  ['globalcomposition_44',['GlobalComposition',['../structcomposition_1_1_global_composition.html',1,'composition']]],
+  ['glvisview_45',['glVisView',['../namespace_probe.html#a12b943de0fdd9f43c61690d9bf4458fc',1,'Probe::glVisView(mfem::GridFunction &u, mfem::Mesh &mesh, const std::string &windowTitle="grid function", const std::string &keyset="")'],['../namespace_probe.html#a03820eac150e53edc8f112f3e637d7ed',1,'Probe::glVisView(mfem::Vector &vec, mfem::FiniteElementSpace &fes, const std::string &windowTitle="vector", const std::string &keyset="")']]],
+  ['gmresinverter_46',['GMRESInverter',['../class_g_m_r_e_s_inverter.html',1,'GMRESInverter'],['../class_g_m_r_e_s_inverter.html#a58b277d5a3e5882eb1844db328e60c7a',1,'GMRESInverter::GMRESInverter()']]],
+  ['grad_5fad_47',['grad_ad',['../structhelmholtz_1_1_e_o_s.html#a4d478a995bf9995d8eec9f49570b94bf',1,'helmholtz::EOS']]]
 ];

docs/html/search/all_8.js

@@ -1,12 +1,17 @@
 var searchData=
 [
-  ['index_57',['index',['../structTableIndex.html#a5abb8638b94f778674d999db0f506ecc',1,'TableIndex']]],
-  ['indexoffset_58',['indexOffset',['../structHeader.html#a31039c09176a479defcbe38597eb9957',1,'Header']]],
-  ['initializedobject_59',['initializedObject',['../classDObjectTest.html#a2150dd7881a4d1c68ce51344f174738e',1,'DObjectTest']]],
-  ['initlaize_5fopac_60',['initlaize_opac',['../opac_8h.html#a6243596bfdc55d73744ebecd9e577ee8',1,'opac.h']]],
-  ['is_5fbig_5fendian_61',['is_big_endian',['../opatIO_8cpp.html#aed5f3e73e01248d8a2d6792a69081f9e',1,'opatIO.cpp']]],
-  ['isdebugenabled_62',['isDebugEnabled',['../classMetadata.html#abe52c81e04665628666b4140cd346b69',1,'Metadata']]],
-  ['isdebuggingenabled_63',['isDebuggingEnabled',['../classDObject.html#ae47bf220fbe2173cf6933c2380035dbd',1,'DObject']]],
-  ['isloaded_64',['isLoaded',['../classConstants.html#ae276dfdc0ffe75a53e3842e33ab52630',1,'Constants::isLoaded()'],['../classOpatIO.html#aba1be05d51d4b0b9e4581b95ad0e1890',1,'OpatIO::isLoaded()']]],
-  ['isloaded_65',['IsLoaded',['../classMeshIO.html#a12495fc814254021d44e0509ac760672',1,'MeshIO']]]
+  ['h3_0',['h3',['../namespacehelmholtz.html#a41df406f39a42cca3025714d1f8eb46e',1,'helmholtz::h3(std::array< double, 36 > fi, double w0t, double w1t, double w0mt, double w1mt, double w0d, double w1d, double w0md, double w1md)'],['../namespacehelmholtz.html#aa85859a889cb5f1737f1f6aebf515e23',1,'helmholtz::h3(double fi[36], double w0t, double w1t, double w0mt, double w1mt, double w0d, double w1d, double w0md, double w1md)']]],
+  ['h5_1',['h5',['../namespacehelmholtz.html#a1a82ee04b75adacdd2b9f69ccd318a83',1,'helmholtz::h5(std::array< double, 36 > fi, double w0t, double w1t, double w2t, double w0mt, double w1mt, double w2mt, double w0d, double w1d, double w2d, double w0md, double w1md, double w2md)'],['../namespacehelmholtz.html#a9a32be64f7f8465928548b2fa92ec524',1,'helmholtz::h5(double fi[36], double w0t, double w1t, double w2t, double w0mt, double w1mt, double w2mt, double w0d, double w1d, double w2d, double w0md, double w1md, double w2md)']]],
+  ['handling_2',['Mesh Handling',['../index.html#usage_meshio',1,'']]],
+  ['has_3',['has',['../class_constants.html#a2aa041fd223f259e55bf098c90581039',1,'Constants']]],
+  ['hassymbol_4',['hasSymbol',['../classcomposition_1_1_composition.html#a7dee1bb3074a6aa2842d4fffcac4d2c4',1,'composition::Composition']]],
+  ['he3he3_5frate_5',['he3he3_rate',['../namespacenn_approx8.html#a0adb7d9f97ced151a36f0d2aaa95011d',1,'nnApprox8']]],
+  ['he3he4_5frate_6',['he3he4_rate',['../namespacenn_approx8.html#a2e8c3f6a3752b706d200b5ecef2c3223',1,'nnApprox8']]],
+  ['heap_5fallocate_5fcontiguous_5f2d_5fmemory_7',['heap_allocate_contiguous_2D_memory',['../helm_8cpp.html#a0537c506d77a3dfea9b237aeb07f3281',1,'heap_allocate_contiguous_2D_memory(int rows, int cols): helm.cpp'],['../helm_8h.html#a0537c506d77a3dfea9b237aeb07f3281',1,'heap_allocate_contiguous_2D_memory(int rows, int cols): helm.cpp']]],
+  ['heap_5fdeallocate_5fcontiguous_5f2d_5fmemory_8',['heap_deallocate_contiguous_2D_memory',['../helm_8cpp.html#a82f032cfe64e2576c67986660cbe824d',1,'heap_deallocate_contiguous_2D_memory(double **array): helm.cpp'],['../helm_8h.html#a82f032cfe64e2576c67986660cbe824d',1,'heap_deallocate_contiguous_2D_memory(double **array): helm.cpp']]],
+  ['helm_2ecpp_9',['helm.cpp',['../helm_8cpp.html',1,'']]],
+  ['helm_2eh_10',['helm.h',['../helm_8h.html',1,'']]],
+  ['helmholtz_11',['helmholtz',['../namespacehelmholtz.html',1,'']]],
+  ['helmtable_12',['HELMTable',['../structhelmholtz_1_1_h_e_l_m_table.html',1,'helmholtz::HELMTable'],['../structhelmholtz_1_1_h_e_l_m_table.html#a0165aed3bb02b69a70934c8b7b185872',1,'helmholtz::HELMTable::HELMTable()']]],
+  ['high_20level_20usage_20examples_13',['High-Level Usage Examples',['../index.html#usage_sec',1,'']]]
 ];

docs/html/search/all_9.js

@@ -1,4 +1,31 @@
 var searchData=
 [
-  ['keys_66',['keys',['../classConstants.html#ab9de36fa145552a3e7964e7e85a67149',1,'Constants']]]
+  ['ic12_0',['ic12',['../structnn_approx8_1_1_net.html#a6d10a7a53c20fd59bb97ff619e7579df',1,'nnApprox8::Net']]],
+  ['iden_1',['iden',['../structnn_approx8_1_1_net.html#ad69abef62cfa266e0369f8cfcb144939',1,'nnApprox8::Net']]],
+  ['iener_2',['iener',['../structnn_approx8_1_1_net.html#ae60a5909d107b9857dd31a117b943eae',1,'nnApprox8::Net']]],
+  ['ih1_3',['ih1',['../structnn_approx8_1_1_net.html#a86ed8213cf2fffe5dcd7f06bdb6a6186',1,'nnApprox8::Net']]],
+  ['ihe3_4',['ihe3',['../structnn_approx8_1_1_net.html#af9848b913e7d761c63d6d3cc7fab5c3d',1,'nnApprox8::Net']]],
+  ['ihe4_5',['ihe4',['../structnn_approx8_1_1_net.html#aa94596664306f33de1bd045417f9ff1e',1,'nnApprox8::Net']]],
+  ['imax_6',['IMAX',['../helm_8h.html#a6e96ad1c3be2c24926ba0487d28cd75c',1,'helm.h']]],
+  ['imax_7',['imax',['../structhelmholtz_1_1_h_e_l_m_table.html#aaee7f470b4ce2518c3490474853d13b7',1,'helmholtz::HELMTable']]],
+  ['img24_8',['img24',['../structnn_approx8_1_1_net.html#a70112e0ee737a1de09a02aac4a4d7556',1,'nnApprox8::Net']]],
+  ['in14_9',['in14',['../structnn_approx8_1_1_net.html#a0eaaafa199c9451554e1cf28eba4b872',1,'nnApprox8::Net']]],
+  ['ine20_10',['ine20',['../structnn_approx8_1_1_net.html#a9a964a24b5498991057e8e9870f02fbc',1,'nnApprox8::Net']]],
+  ['initialize_11',['initialize',['../class_constants.html#a60f87120b1eef774efe8c168aa69af6a',1,'Constants']]],
+  ['initializedobject_12',['initializedObject',['../class_d_object_test.html#a2150dd7881a4d1c68ce51344f174738e',1,'DObjectTest']]],
+  ['initlaize_5fopac_13',['initlaize_opac',['../opac_8h.html#a6243596bfdc55d73744ebecd9e577ee8',1,'opac.h']]],
+  ['integrators_2ecpp_14',['integrators.cpp',['../integrators_8cpp.html',1,'']]],
+  ['integrators_2eh_15',['integrators.h',['../integrators_8h.html',1,'']]],
+  ['introduction_16',['Introduction',['../index.html#intro_sec',1,'']]],
+  ['io16_17',['io16',['../structnn_approx8_1_1_net.html#ae592cf9d13f0a783087f7016ae1c3e4e',1,'nnApprox8::Net']]],
+  ['isdebugenabled_18',['isDebugEnabled',['../class_metadata.html#abe52c81e04665628666b4140cd346b69',1,'Metadata']]],
+  ['isdebuggingenabled_19',['isDebuggingEnabled',['../class_d_object.html#ae47bf220fbe2173cf6933c2380035dbd',1,'DObject']]],
+  ['isfinalized_20',['isFinalized',['../class_polytrope_operator.html#aeb8d505244836212c9015205e486378a',1,'PolytropeOperator']]],
+  ['isloaded_21',['IsLoaded',['../class_mesh_i_o.html#a12495fc814254021d44e0509ac760672',1,'MeshIO']]],
+  ['isloaded_22',['isLoaded',['../class_constants.html#ae276dfdc0ffe75a53e3842e33ab52630',1,'Constants']]],
+  ['isotope_23',['isotope',['../structcomposition_1_1_composition_entry.html#a31b399ff8b24a6ebbfe4bb9ced7a2afa',1,'composition::CompositionEntry']]],
+  ['isstiff_24',['isStiff',['../classnn_approx8_1_1_approx8_network.html#a4b1600c394d4cf312c48e5ca82542a76',1,'nnApprox8::Approx8Network']]],
+  ['isvalidcomposition_25',['isValidComposition',['../classcomposition_1_1_composition.html#ac71fb70e029b4310e2bb4232e4270e96',1,'composition::Composition']]],
+  ['isvalidsymbol_26',['isValidSymbol',['../classcomposition_1_1_composition.html#a11a463394bf9110ac0f1a8b1df1384e9',1,'composition::Composition']]],
+  ['itemp_27',['itemp',['../structnn_approx8_1_1_net.html#affd739be39542d5f0f0730adb5108dc1',1,'nnApprox8::Net']]]
 ];

docs/html/search/classes_0.js

@@ -1,4 +1,5 @@
 var searchData=
 [
-  ['bilinearintegratorwrapper_164',['BilinearIntegratorWrapper',['../classBilinearIntegratorWrapper.html',1,'']]]
+  ['approx8network_0',['Approx8Network',['../classnn_approx8_1_1_approx8_network.html',1,'nnApprox8']]],
+  ['approx8test_1',['approx8Test',['../classapprox8_test.html',1,'']]]
 ];

docs/html/search/classes_1.js

@@ -1,10 +1,12 @@
 var searchData=
 [
-  ['compositenonlinearintegrator_165',['CompositeNonlinearIntegrator',['../classCompositeNonlinearIntegrator.html',1,'']]],
-  ['config_166',['Config',['../classConfig.html',1,'']]],
-  ['configtest_167',['configTest',['../classconfigTest.html',1,'']]],
-  ['configtestprivateaccessor_168',['configTestPrivateAccessor',['../classconfigTestPrivateAccessor.html',1,'']]],
-  ['constant_169',['Constant',['../structConstant.html',1,'']]],
-  ['constants_170',['Constants',['../classConstants.html',1,'']]],
-  ['consttest_171',['constTest',['../classconstTest.html',1,'']]]
+  ['composition_0',['Composition',['../classcomposition_1_1_composition.html',1,'composition']]],
+  ['compositionentry_1',['CompositionEntry',['../structcomposition_1_1_composition_entry.html',1,'composition']]],
+  ['compositiontest_2',['compositionTest',['../classcomposition_test.html',1,'']]],
+  ['config_3',['Config',['../class_config.html',1,'']]],
+  ['configtest_4',['configTest',['../classconfig_test.html',1,'']]],
+  ['configtestprivateaccessor_5',['configTestPrivateAccessor',['../classconfig_test_private_accessor.html',1,'']]],
+  ['constant_6',['Constant',['../struct_constant.html',1,'']]],
+  ['constants_7',['Constants',['../class_constants.html',1,'']]],
+  ['consttest_8',['constTest',['../classconst_test.html',1,'']]]
 ];

docs/html/search/classes_2.js

@@ -1,5 +1,6 @@
 var searchData=
 [
-  ['dobject_172',['DObject',['../classDObject.html',1,'']]],
-  ['dobjecttest_173',['DObjectTest',['../classDObjectTest.html',1,'']]]
+  ['dobject_0',['DObject',['../class_d_object.html',1,'']]],
+  ['dobjecttest_1',['DObjectTest',['../class_d_object_test.html',1,'']]],
+  ['dthetainterpcoeff_2',['dThetaInterpCoeff',['../structpolycoeff_1_1d_theta_interp_coeff.html',1,'polycoeff']]]
 ];

docs/html/search/close.svg

@@ -1,27 +1,14 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
+ "https://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
 <svg
-   xmlns:dc="http://purl.org/dc/elements/1.1/"
-   xmlns:cc="http://creativecommons.org/ns#"
-   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
-   xmlns:svg="http://www.w3.org/2000/svg"
    xmlns="http://www.w3.org/2000/svg"
+   xmlns:xlink="http://www.w3.org/1999/xlink"
    viewBox="0 0 11 11"
    height="11"
    width="11"
    id="svg2"
    version="1.1">
-  <metadata
-     id="metadata8">
-    <rdf:RDF>
-      <cc:Work
-         rdf:about="">
-        <dc:format>image/svg+xml</dc:format>
-        <dc:type
-           rdf:resource="http://purl.org/dc/dcmitype/StillImage" />
-        <dc:title></dc:title>
-      </cc:Work>
-    </rdf:RDF>
-  </metadata>
   <defs
      id="defs6" />
   <path

docs/html/search/files_0.js

@@ -1,4 +1,4 @@
 var searchData=
 [
-  ['_5f_5finit_5f_5f_2epy_186',['__init__.py',['../build_2lib_2opatio_2____init_____8py.html',1,'(Global Namespace)'],['../build_2lib_2opatio_2opat_2____init_____8py.html',1,'(Global Namespace)'],['../src_2opatio_2____init_____8py.html',1,'(Global Namespace)'],['../src_2opatio_2opat_2____init_____8py.html',1,'(Global Namespace)']]]
+  ['4dstartypes_2eh_0',['4DSTARTypes.h',['../4_d_s_t_a_r_types_8h.html',1,'']]]
 ];

docs/html/search/files_1.js

@@ -1,9 +1,6 @@
 var searchData=
 [
-  ['config_2ecpp_187',['config.cpp',['../config_8cpp.html',1,'']]],
-  ['config_2eh_188',['config.h',['../config_8h.html',1,'']]],
-  ['configtest_2ecpp_189',['configTest.cpp',['../configTest_8cpp.html',1,'']]],
-  ['const_2ecpp_190',['const.cpp',['../const_8cpp.html',1,'']]],
-  ['const_2eh_191',['const.h',['../const_8h.html',1,'']]],
-  ['consttest_2ecpp_192',['constTest.cpp',['../constTest_8cpp.html',1,'']]]
+  ['approx8_2ecpp_0',['approx8.cpp',['../approx8_8cpp.html',1,'']]],
+  ['approx8_2eh_1',['approx8.h',['../approx8_8h.html',1,'']]],
+  ['approx8test_2ecpp_2',['approx8Test.cpp',['../approx8_test_8cpp.html',1,'']]]
 ];

docs/html/search/files_2.js

@@ -1,6 +1,13 @@
 var searchData=
 [
-  ['dobject_2ecpp_193',['DObject.cpp',['../DObject_8cpp.html',1,'']]],
-  ['dobject_2eh_194',['DObject.h',['../DObject_8h.html',1,'']]],
-  ['dobjecttest_2ecpp_195',['DObjectTest.cpp',['../DObjectTest_8cpp.html',1,'']]]
+  ['comp_2ecpp_0',['comp.cpp',['../comp_8cpp.html',1,'']]],
+  ['composition_2ecpp_1',['composition.cpp',['../composition_8cpp.html',1,'']]],
+  ['composition_2eh_2',['composition.h',['../composition_8h.html',1,'']]],
+  ['compositiontest_2ecpp_3',['compositionTest.cpp',['../composition_test_8cpp.html',1,'']]],
+  ['config_2ecpp_4',['config.cpp',['../config_8cpp.html',1,'']]],
+  ['config_2eh_5',['config.h',['../config_8h.html',1,'']]],
+  ['configtest_2ecpp_6',['configTest.cpp',['../config_test_8cpp.html',1,'']]],
+  ['const_2ecpp_7',['const.cpp',['../const_8cpp.html',1,'']]],
+  ['const_2eh_8',['const.h',['../const_8h.html',1,'']]],
+  ['consttest_2ecpp_9',['constTest.cpp',['../const_test_8cpp.html',1,'']]]
 ];

docs/html/search/functions_0.js

@@ -1,6 +1,8 @@
 var searchData=
 [
-  ['add_5fintegrator_219',['add_integrator',['../classCompositeNonlinearIntegrator.html#af336df4849e99a3bc95161f03868efc4',1,'CompositeNonlinearIntegrator']]],
-  ['assembleelementgrad_220',['AssembleElementGrad',['../classNonlinearPowerIntegrator.html#a5d8116206e35119fbee20540f5bd3157',1,'NonlinearPowerIntegrator::AssembleElementGrad()'],['../classBilinearIntegratorWrapper.html#a19b6facddeba8256619981e6276f5815',1,'BilinearIntegratorWrapper::AssembleElementGrad()'],['../classCompositeNonlinearIntegrator.html#a2b466f6e16a5797f5ed50621fc4818a0',1,'CompositeNonlinearIntegrator::AssembleElementGrad()']]],
-  ['assembleelementvector_221',['AssembleElementVector',['../classNonlinearPowerIntegrator.html#a23b79c0ab632824ffda9b43928a00504',1,'NonlinearPowerIntegrator::AssembleElementVector()'],['../classBilinearIntegratorWrapper.html#a10c3ac5bb62c91c3a437924e33a527d8',1,'BilinearIntegratorWrapper::AssembleElementVector()'],['../classCompositeNonlinearIntegrator.html#a0a3c6ccf134c4566218eb3a33861214c',1,'CompositeNonlinearIntegrator::AssembleElementVector()']]]
+  ['a_0',['a',['../namespacelane_emden.html#ac80163d44a9840f3de184f50144a5158',1,'laneEmden']]],
+  ['assembleandfinalizeform_1',['assembleAndFinalizeForm',['../class_poly_solver.html#a553333a8520390effad208fcde3deaf0',1,'PolySolver']]],
+  ['assembleblocksystem_2',['assembleBlockSystem',['../class_poly_solver.html#afe38ca0ba610c352f1b8b9463bff947c',1,'PolySolver']]],
+  ['assembleelementgrad_3',['AssembleElementGrad',['../classpoly_m_f_e_m_utils_1_1_nonlinear_power_integrator.html#aa6913e69a87ff759ec59b46d89b8cde2',1,'polyMFEMUtils::NonlinearPowerIntegrator']]],
+  ['assembleelementvector_4',['AssembleElementVector',['../classpoly_m_f_e_m_utils_1_1_nonlinear_power_integrator.html#a4999e49e957ccb3900be9b04466bca5b',1,'polyMFEMUtils::NonlinearPowerIntegrator']]]
 ];

docs/html/search/functions_1.js

@@ -1,4 +1,6 @@
 var searchData=
 [
-  ['bilinearintegratorwrapper_222',['BilinearIntegratorWrapper',['../classBilinearIntegratorWrapper.html#a72155007095c629dfca4f349739e4a18',1,'BilinearIntegratorWrapper']]]
+  ['build_5fdof_5fidentification_5fvector_0',['build_dof_identification_vector',['../namespaceserif_1_1utilities.html#a2c487e358a0f49e5712f3ddda6f65322',1,'serif::utilities']]],
+  ['build_5freduced_5fmatrix_1',['build_reduced_matrix',['../namespaceserif_1_1utilities.html#a53f2bbdef6ef2ae6e2189c7ab478e861',1,'serif::utilities']]],
+  ['buildindividualforms_2',['buildIndividualForms',['../class_poly_solver.html#ad458dfdfdbd84bd4aa723d7b82df57da',1,'PolySolver']]]
 ];

docs/html/search/functions_2.js

@@ -1,12 +1,25 @@
 var searchData=
 [
-  ['calladdtocache_223',['callAddToCache',['../classconfigTestPrivateAccessor.html#adf7f5c651bdd5ca8c12f18a6a0f8a8e9',1,'configTestPrivateAccessor']]],
-  ['callcachesize_224',['callCacheSize',['../classconfigTestPrivateAccessor.html#aaa9517067ef84ab7fb6365536180ce13',1,'configTestPrivateAccessor']]],
-  ['calliskeyincache_225',['callIsKeyInCache',['../classconfigTestPrivateAccessor.html#a6d7d0e1bf82c1917dde20167697a03b1',1,'configTestPrivateAccessor']]],
-  ['callregisterkeynotfound_226',['callRegisterKeyNotFound',['../classconfigTestPrivateAccessor.html#a447eb550ff20700e31bd530b7ca01592',1,'configTestPrivateAccessor']]],
-  ['checkifkeyunknown_227',['CheckIfKeyUnknown',['../classconfigTestPrivateAccessor.html#a4de7c133e8e296d7f9e713aa0b2c4329',1,'configTestPrivateAccessor']]],
-  ['compositenonlinearintegrator_228',['CompositeNonlinearIntegrator',['../classCompositeNonlinearIntegrator.html#aba931cf9d57170b7483eed0ade6cd459',1,'CompositeNonlinearIntegrator']]],
-  ['computechecksum_229',['computeChecksum',['../classOpatIO.html#af5c52b5d862f5b94ee847c6c791998db',1,'OpatIO::computeChecksum(int tableID)'],['../classOpatIO.html#a6161d6e006312ebd79b037501ade9943',1,'OpatIO::computeChecksum(std::vector< double > index)']]],
-  ['computemeshvolume_230',['ComputeMeshVolume',['../meshIOTest_8cpp.html#aa6ba7ddcf2f95334ee7497d22d9f0f25',1,'meshIOTest.cpp']]],
-  ['constant_231',['Constant',['../structConstant.html#a84ca5b6951cc8a8eccd083894302a857',1,'Constant']]]
+  ['c_0',['c',['../namespacelane_emden.html#a9a6068f1948185b2217878595159f26b',1,'laneEmden']]],
+  ['c12a_5frate_1',['c12a_rate',['../namespacenn_approx8.html#a77c285ac81064bdaf0859a8cbf235868',1,'nnApprox8']]],
+  ['c12c12_5frate_2',['c12c12_rate',['../namespacenn_approx8.html#a306d1bf533815b98ea4f6294864de7d8',1,'nnApprox8']]],
+  ['c12o16_5frate_3',['c12o16_rate',['../namespacenn_approx8.html#a09c1f166d7f0f9e943ef4b32c5274b7f',1,'nnApprox8']]],
+  ['c12p_5frate_4',['c12p_rate',['../namespacenn_approx8.html#a7b4f6b355b64ee9722eb76fb454f7845',1,'nnApprox8']]],
+  ['calladdtocache_5',['callAddToCache',['../classconfig_test_private_accessor.html#adf7f5c651bdd5ca8c12f18a6a0f8a8e9',1,'configTestPrivateAccessor']]],
+  ['callcachesize_6',['callCacheSize',['../classconfig_test_private_accessor.html#aaa9517067ef84ab7fb6365536180ce13',1,'configTestPrivateAccessor']]],
+  ['calliskeyincache_7',['callIsKeyInCache',['../classconfig_test_private_accessor.html#a6d7d0e1bf82c1917dde20167697a03b1',1,'configTestPrivateAccessor']]],
+  ['callregisterkeynotfound_8',['callRegisterKeyNotFound',['../classconfig_test_private_accessor.html#a447eb550ff20700e31bd530b7ca01592',1,'configTestPrivateAccessor']]],
+  ['checkifkeyunknown_9',['CheckIfKeyUnknown',['../classconfig_test_private_accessor.html#a4de7c133e8e296d7f9e713aa0b2c4329',1,'configTestPrivateAccessor']]],
+  ['composition_10',['Composition',['../classcomposition_1_1_composition.html#a844470d1f13475a0a28b5c1914570357',1,'composition::Composition::Composition()=default'],['../classcomposition_1_1_composition.html#ada296207092ebe33ed599d1712c49633',1,'composition::Composition::Composition(const std::vector< std::string > &symbols)'],['../classcomposition_1_1_composition.html#a46be04b5d28183092dbb29bbd0037fb8',1,'composition::Composition::Composition(const std::set< std::string > &symbols)'],['../classcomposition_1_1_composition.html#a6570edadab8cd37c96a61ec43de6f8ba',1,'composition::Composition::Composition(const std::vector< std::string > &symbols, const std::vector< double > &mass_fractions, bool massFracMode=true)']]],
+  ['compositionentry_11',['CompositionEntry',['../structcomposition_1_1_composition_entry.html#af6835e8d2f97e52d76f3704d8db9cd38',1,'composition::CompositionEntry::CompositionEntry()'],['../structcomposition_1_1_composition_entry.html#a6bb77a98088b71a7665912caadcc2e59',1,'composition::CompositionEntry::CompositionEntry(const std::string &symbol, bool massFracMode=true)'],['../structcomposition_1_1_composition_entry.html#a9407ab2732dc35068f4a14eb8a562198',1,'composition::CompositionEntry::CompositionEntry(const CompositionEntry &entry)']]],
+  ['compute_5fcurl_12',['compute_curl',['../namespaceserif_1_1utilities.html#a6e1a8cf248f13c3d66a24bb7b39cf029',1,'serif::utilities']]],
+  ['computeblockoffsets_13',['computeBlockOffsets',['../class_poly_solver.html#ad69d4ff9b5b56e0654f8e082a210c613',1,'PolySolver']]],
+  ['computemeshvolume_14',['ComputeMeshVolume',['../mesh_i_o_test_8cpp.html#aa6ba7ddcf2f95334ee7497d22d9f0f25',1,'meshIOTest.cpp']]],
+  ['constant_15',['Constant',['../struct_constant.html#a84ca5b6951cc8a8eccd083894302a857',1,'Constant']]],
+  ['constants_16',['Constants',['../class_constants.html#af395b3c1d6f0577f4880a21a257aa1db',1,'Constants']]],
+  ['construct_5fjacobian_5fconstant_5fterms_17',['construct_jacobian_constant_terms',['../class_polytrope_operator.html#a45844aac69f5b441f015b9b76ac453d6',1,'PolytropeOperator']]],
+  ['construct_5fmatrix_5frepresentations_18',['construct_matrix_representations',['../class_polytrope_operator.html#a0a22ba7589125309e40cbf8180404e5a',1,'PolytropeOperator']]],
+  ['construct_5freduced_5fblock_5foffsets_19',['construct_reduced_block_offsets',['../class_polytrope_operator.html#a961d9dc73ba632e20266ede59c9503c2',1,'PolytropeOperator']]],
+  ['convert_5fnetin_20',['convert_netIn',['../classnn_approx8_1_1_approx8_network.html#af6bd9b6c9b4c3f344ae6b8fcce1b3659',1,'nnApprox8::Approx8Network']]],
+  ['createresource_21',['createResource',['../resource_manager_types_8cpp.html#ae0a43e40a0c5e0fd54274c9cd8688d19',1,'createResource(const std::string &type, const std::string &path): resourceManagerTypes.cpp'],['../resource_manager_types_8h.html#ae0a43e40a0c5e0fd54274c9cd8688d19',1,'createResource(const std::string &type, const std::string &path): resourceManagerTypes.cpp']]]
 ];

docs/html/search/functions_3.js

@@ -1,4 +1,13 @@
 var searchData=
 [
-  ['dobject_232',['DObject',['../classDObject.html#a0ae54853e18265657296bfb5ac3bf9d0',1,'DObject::DObject()'],['../classDObject.html#a598321f3b8524b98df72393c04d7470c',1,'DObject::DObject(const DataType &data)']]]
+  ['ddpsi0_0',['ddpsi0',['../namespacehelmholtz.html#afb12b8ccdd5491440542d69cd81bcb55',1,'helmholtz']]],
+  ['ddpsi1_1',['ddpsi1',['../namespacehelmholtz.html#a73dce1f6c33b646d29ea6b746beed652',1,'helmholtz']]],
+  ['ddpsi2_2',['ddpsi2',['../namespacehelmholtz.html#a45b09d3473306d955bc45cf11df44a11',1,'helmholtz']]],
+  ['dfmod_3',['dfmod',['../namespacepoly_m_f_e_m_utils.html#a6aa65cbcd9af83e05c34fbd8428c335c',1,'polyMFEMUtils']]],
+  ['diffusioncoeff_4',['diffusionCoeff',['../namespacepolycoeff.html#a1c9b910e2fb3363c13bb8ebf2fb98f09',1,'polycoeff']]],
+  ['dobject_5',['DObject',['../class_d_object.html#a0ae54853e18265657296bfb5ac3bf9d0',1,'DObject::DObject()'],['../class_d_object.html#a598321f3b8524b98df72393c04d7470c',1,'DObject::DObject(const DataType &data)']]],
+  ['dp_5frate_6',['dp_rate',['../namespacenn_approx8.html#a4b667550e45632fd9659d0ba61fb1733',1,'nnApprox8']]],
+  ['dpsi0_7',['dpsi0',['../namespacehelmholtz.html#a1eb81e38cac69acdff0c72bfbdfa0a49',1,'helmholtz']]],
+  ['dpsi1_8',['dpsi1',['../namespacehelmholtz.html#a90f0e41668ae5e2827292892db0be33c',1,'helmholtz']]],
+  ['dpsi2_9',['dpsi2',['../namespacehelmholtz.html#a9638e40279f8a986ab000a1628fb4119',1,'helmholtz']]]
 ];

docs/html/search/functions_4.js

@@ -1,18 +1,5 @@
 var searchData=
 [
-  ['get_233',['get',['../classLockableDObject.html#adcfe201fc728cc1c6fcf638a566ba9a1',1,'LockableDObject::get()'],['../classConstants.html#a36ddd7fe6857d1bbf6d1c84d4ed7bc19',1,'Constants::get()']]],
-  ['getbytesize_234',['getByteSize',['../classMetadata.html#ac7980d1efdd6ae434f0115f83d08348e',1,'Metadata']]],
-  ['getdata_235',['getData',['../classDObject.html#a4862655c3634d019b0a45b811d6f7235',1,'DObject']]],
-  ['getdataas_236',['getDataAs',['../classDObject.html#aca2db093c1c8c6f7893de07544aed619',1,'DObject']]],
-  ['getdatatype_237',['getDataType',['../classMetadata.html#aeed7f22ccc61d9a3d6425441d381dcdc',1,'Metadata']]],
-  ['getdimensions_238',['getDimensions',['../classMetadata.html#a412c0c0b8754d85f9edbbdcd637f3b20',1,'Metadata']]],
-  ['geterrorcode_239',['getErrorCode',['../classDObject.html#afa8926d916081de72478cb8813c25e98',1,'DObject']]],
-  ['getheader_240',['getHeader',['../classOpatIO.html#afe725b647bc5bb802f6d711fc5dca3ab',1,'OpatIO']]],
-  ['getinstance_241',['getInstance',['../classConstants.html#aaa6f3af20fa563cf22df71a987923065',1,'Constants']]],
-  ['getmaxqdepth_242',['getMaxQDepth',['../classOpatIO.html#a48cd5e4f3fdb221bc1b6253e149e8e01',1,'OpatIO']]],
-  ['getmesh_243',['GetMesh',['../classMeshIO.html#a3e4bccff08abf9a28b3d64c8fb9f7317',1,'MeshIO']]],
-  ['getnumindex_244',['getNumIndex',['../classOpatIO.html#a8f7cc9a4ec8845c22df330678afd29c6',1,'OpatIO']]],
-  ['getopatversion_245',['getOPATVersion',['../classOpatIO.html#a2894437c09f4cdb06c9b06d6aad4bd2f',1,'OpatIO']]],
-  ['gettable_246',['getTable',['../classOpatIO.html#a5c35b863873239e023427864ed016f58',1,'OpatIO']]],
-  ['gettableindex_247',['getTableIndex',['../classOpatIO.html#af0bc6bb210c4ff74bc1e043aeb252e1a',1,'OpatIO::getTableIndex()'],['../classOpatIO.html#a408b7f7d58d4a49636220f0431813dad',1,'OpatIO::getTableIndex(std::vector< double > index)']]]
+  ['eosio_0',['EosIO',['../class_eos_i_o.html#ad721f72b591f1ef4b7fa87668e8d8b34',1,'EosIO']]],
+  ['evaluate_1',['evaluate',['../classnn_approx8_1_1_approx8_network.html#a31b8a20338d18123eca6e644f6e72366',1,'nnApprox8::Approx8Network::evaluate()'],['../classnuclear_network_1_1_network.html#aaa7fe5e69bd45e268c815aa8919966f1',1,'nuclearNetwork::Network::evaluate()']]]
 ];

docs/html/search/functions_5.js

@@ -1,4 +1,8 @@
 var searchData=
 [
-  ['has_248',['has',['../classConstants.html#a2aa041fd223f259e55bf098c90581039',1,'Constants']]]
+  ['finalize_0',['finalize',['../classcomposition_1_1_composition.html#a5547fe9d6154e10a7406d8a06d969462',1,'composition::Composition::finalize()'],['../class_polytrope_operator.html#ac7ebc4ae1c34e1569281be028e4daec1',1,'PolytropeOperator::finalize()']]],
+  ['finalizemassfracmode_1',['finalizeMassFracMode',['../classcomposition_1_1_composition.html#ae2b5392ad8acd0ab8e17d8452b35aa86',1,'composition::Composition']]],
+  ['finalizenumberfracmode_2',['finalizeNumberFracMode',['../classcomposition_1_1_composition.html#a8a3aec6d7f2f6cb4f91105740c15ffc8',1,'composition::Composition']]],
+  ['findcenterelement_3',['findCenterElement',['../class_poly_solver.html#a77455ce3505d93f7b5b5d3e9447bbe23',1,'PolySolver']]],
+  ['fmod_4',['fmod',['../namespacepoly_m_f_e_m_utils.html#a3b99f87291c525582b460ffdc4e2c220',1,'polyMFEMUtils']]]
 ];

docs/html/search/functions_6.js

@@ -1,9 +1,46 @@
 var searchData=
 [
-  ['initlaize_5fopac_249',['initlaize_opac',['../opac_8h.html#a6243596bfdc55d73744ebecd9e577ee8',1,'opac.h']]],
-  ['is_5fbig_5fendian_250',['is_big_endian',['../opatIO_8cpp.html#aed5f3e73e01248d8a2d6792a69081f9e',1,'opatIO.cpp']]],
-  ['isdebugenabled_251',['isDebugEnabled',['../classMetadata.html#abe52c81e04665628666b4140cd346b69',1,'Metadata']]],
-  ['isdebuggingenabled_252',['isDebuggingEnabled',['../classDObject.html#ae47bf220fbe2173cf6933c2380035dbd',1,'DObject']]],
-  ['isloaded_253',['isLoaded',['../classConstants.html#ae276dfdc0ffe75a53e3842e33ab52630',1,'Constants::isLoaded()'],['../classOpatIO.html#aba1be05d51d4b0b9e4581b95ad0e1890',1,'OpatIO::isLoaded()']]],
-  ['isloaded_254',['IsLoaded',['../classMeshIO.html#a12495fc814254021d44e0509ac760672',1,'MeshIO']]]
+  ['get_0',['get',['../class_constants.html#a36ddd7fe6857d1bbf6d1c84d4ed7bc19',1,'Constants::get()'],['../class_lockable_d_object.html#adcfe201fc728cc1c6fcf638a566ba9a1',1,'LockableDObject::get()']]],
+  ['get_5fblock_5foffsets_1',['get_block_offsets',['../class_polytrope_operator.html#a2a7f200a45cff11897470de39a302f93',1,'PolytropeOperator']]],
+  ['get_5fessential_5ftrue_5fdofs_2',['get_essential_true_dofs',['../class_polytrope_operator.html#a1bf3ced83363a1318258ae0f5bfeb57e',1,'PolytropeOperator']]],
+  ['get_5ffree_5fdofs_3',['get_free_dofs',['../class_polytrope_operator.html#ab5577c71be2bdb0f82daefd2631b8cb1',1,'PolytropeOperator']]],
+  ['get_5fhelm_5feos_4',['get_helm_EOS',['../namespacehelmholtz.html#ad2176033ca3ac4e5dc65f281477b94c2',1,'helmholtz']]],
+  ['get_5fjacobian_5foperator_5',['get_jacobian_operator',['../class_polytrope_operator.html#ac05cd1bd6b0a2b2502af9d8a6b86077c',1,'PolytropeOperator']]],
+  ['get_5fpreconditioner_6',['get_preconditioner',['../class_polytrope_operator.html#a7789efbb8ba3a09a0975475518b4b611',1,'PolytropeOperator']]],
+  ['get_5freduced_5fblock_5foffsets_7',['get_reduced_block_offsets',['../class_polytrope_operator.html#acc69c13a7178c25af2ff5c339cbb1c67',1,'PolytropeOperator']]],
+  ['get_5freduced_5fsystem_5fsize_8',['get_reduced_system_size',['../class_polytrope_operator.html#afbcb03cce5e5da376163a7dd89216400',1,'PolytropeOperator']]],
+  ['get_5ft9_5farray_9',['get_T9_array',['../namespacenn_approx8.html#a4c456c6d41b33d7b5c9e6520ec002e0e',1,'nnApprox8']]],
+  ['getavaliableresources_10',['getAvaliableResources',['../class_resource_manager.html#a77243baf9aa96d5f3c1635f8a34b48b5',1,'ResourceManager']]],
+  ['getbytesize_11',['getByteSize',['../class_metadata.html#ac7980d1efdd6ae434f0115f83d08348e',1,'Metadata']]],
+  ['getcomposition_12',['getComposition',['../classcomposition_1_1_composition.html#a41df148cfdc1253a87f64c8874763e80',1,'composition::Composition::getComposition(const std::string &symbol) const'],['../classcomposition_1_1_composition.html#ae38c20ab0819669f3d6fbefbf8a2fa7c',1,'composition::Composition::getComposition() const']]],
+  ['getdata_13',['getData',['../class_d_object.html#a4862655c3634d019b0a45b811d6f7235',1,'DObject']]],
+  ['getdataas_14',['getDataAs',['../class_d_object.html#aca2db093c1c8c6f7893de07544aed619',1,'DObject']]],
+  ['getdatatype_15',['getDataType',['../class_metadata.html#aeed7f22ccc61d9a3d6425441d381dcdc',1,'Metadata']]],
+  ['getdimensions_16',['getDimensions',['../class_metadata.html#a412c0c0b8754d85f9edbbdcd637f3b20',1,'Metadata']]],
+  ['getdofcoordinates_17',['GetDofCoordinates',['../class_poly_solver.html#ae80ad90a3f632683e38ae03cb4b8e12b',1,'PolySolver']]],
+  ['geterrorcode_18',['getErrorCode',['../class_d_object.html#afa8926d916081de72478cb8813c25e98',1,'DObject']]],
+  ['getessentialtruedof_19',['getEssentialTrueDof',['../class_poly_solver.html#a45cc1921d9e385b31406b00d750d9a8b',1,'PolySolver']]],
+  ['getfirstsegment_20',['getFirstSegment',['../resource_manager_types_8cpp.html#a3adea101b1d749fb0eaee2e91b7e10fe',1,'getFirstSegment(const std::string &input): resourceManagerTypes.cpp'],['../resource_manager_types_8h.html#a3adea101b1d749fb0eaee2e91b7e10fe',1,'getFirstSegment(const std::string &input): resourceManagerTypes.cpp']]],
+  ['getformat_21',['getFormat',['../class_eos_i_o.html#add10f91411e996844a14979d12d107b7',1,'EosIO']]],
+  ['getgradient_22',['GetGradient',['../class_polytrope_operator.html#af0324f7a83083306158bb8740fdf4379',1,'PolytropeOperator']]],
+  ['getinstance_23',['getInstance',['../class_constants.html#ab302ea5420378c55a9e5f116d19ae0e2',1,'Constants::getInstance()'],['../class_probe_1_1_log_manager.html#adddabc01655308e7e62d8d3bd1b15386',1,'Probe::LogManager::getInstance()'],['../class_resource_manager.html#ad4dd8ab7ad458929de4a60128079af98',1,'ResourceManager::getInstance()']]],
+  ['getlastline_24',['getLastLine',['../probe_test_8cpp.html#a6181751ac1c7f7f38b548af87ad506ab',1,'probeTest.cpp']]],
+  ['getlogger_25',['getLogger',['../class_probe_1_1_log_manager.html#a5a12a541a9a7ca7f848ff385fb729c1d',1,'Probe::LogManager']]],
+  ['getloggernames_26',['getLoggerNames',['../class_probe_1_1_log_manager.html#a91daa688d52850bcf857fe638e9f421d',1,'Probe::LogManager']]],
+  ['getloggers_27',['getLoggers',['../class_probe_1_1_log_manager.html#a627ffe6b758ad69e77a7033f28bd7dbd',1,'Probe::LogManager']]],
+  ['getmassfracmode_28',['getMassFracMode',['../structcomposition_1_1_composition_entry.html#aa715e35857d200dd69a0e777afb312e0',1,'composition::CompositionEntry']]],
+  ['getmassfraction_29',['getMassFraction',['../classcomposition_1_1_composition.html#a205d51c7455bdf7069de1794315954aa',1,'composition::Composition::getMassFraction() const'],['../classcomposition_1_1_composition.html#a9cca346916b1bb733a3de915dce10ccb',1,'composition::Composition::getMassFraction(const std::string &symbol) const']]],
+  ['getmesh_30',['GetMesh',['../class_mesh_i_o.html#a12d2876be0d000aaaa6e5cd6d6a758af',1,'MeshIO']]],
+  ['getmesh_31',['getMesh',['../class_poly_solver.html#a7959fe89ce2753b262f1e5b1a1b7fd4e',1,'PolySolver']]],
+  ['getmeshradius_32',['getMeshRadius',['../namespace_probe.html#a7f82da2ba203b4c8ddabe66105518ab5',1,'Probe']]],
+  ['getn_33',['getN',['../class_poly_solver.html#afdb769d3ee9e0929c16a68eb71630f23',1,'PolySolver']]],
+  ['getnumberfraction_34',['getNumberFraction',['../classcomposition_1_1_composition.html#aa75453fd563e3f50dee316879df01968',1,'composition::Composition::getNumberFraction(const std::string &symbol) const'],['../classcomposition_1_1_composition.html#a0990e41edd2ad138e844fea0962c8278',1,'composition::Composition::getNumberFraction() const']]],
+  ['getorder_35',['getOrder',['../class_poly_solver.html#aea184d88d7c450b03682f61565541d72',1,'PolySolver']]],
+  ['getraysolution_36',['getRaySolution',['../namespace_probe.html#ad9b811b23f12083ece6f4e6dbe2dcdd7',1,'Probe::getRaySolution(mfem::GridFunction &u, mfem::Mesh &mesh, const std::vector< double > &rayDirection, int numSamples, std::string filename)'],['../namespace_probe.html#a79200561b55e113bf48db25def08ab71',1,'Probe::getRaySolution(mfem::Vector &vec, mfem::FiniteElementSpace &fes, const std::vector< double > &rayDirection, int numSamples, std::string filename)']]],
+  ['getregisteredsymbols_37',['getRegisteredSymbols',['../classcomposition_1_1_composition.html#affaeabe495474b82951786591ead8026',1,'composition::Composition']]],
+  ['getresource_38',['getResource',['../class_resource_manager.html#a203619e5da7f2bef6cbe13326d41eda4',1,'ResourceManager']]],
+  ['getsolution_39',['getSolution',['../class_poly_solver.html#aa2baea44320e302f543ed6fad5e0d6a2',1,'PolySolver']]],
+  ['gettable_40',['getTable',['../class_eos_i_o.html#ad7484ed459d8479381f4fb288597cbeb',1,'EosIO']]],
+  ['glvisview_41',['glVisView',['../namespace_probe.html#a12b943de0fdd9f43c61690d9bf4458fc',1,'Probe::glVisView(mfem::GridFunction &u, mfem::Mesh &mesh, const std::string &windowTitle="grid function", const std::string &keyset="")'],['../namespace_probe.html#a03820eac150e53edc8f112f3e637d7ed',1,'Probe::glVisView(mfem::Vector &vec, mfem::FiniteElementSpace &fes, const std::string &windowTitle="vector", const std::string &keyset="")']]],
+  ['gmresinverter_42',['GMRESInverter',['../class_g_m_r_e_s_inverter.html#a58b277d5a3e5882eb1844db328e60c7a',1,'GMRESInverter']]]
 ];

docs/html/search/functions_7.js

@@ -1,4 +1,12 @@
 var searchData=
 [
-  ['keys_255',['keys',['../classConstants.html#ab9de36fa145552a3e7964e7e85a67149',1,'Constants']]]
+  ['h3_0',['h3',['../namespacehelmholtz.html#a41df406f39a42cca3025714d1f8eb46e',1,'helmholtz::h3(std::array< double, 36 > fi, double w0t, double w1t, double w0mt, double w1mt, double w0d, double w1d, double w0md, double w1md)'],['../namespacehelmholtz.html#aa85859a889cb5f1737f1f6aebf515e23',1,'helmholtz::h3(double fi[36], double w0t, double w1t, double w0mt, double w1mt, double w0d, double w1d, double w0md, double w1md)']]],
+  ['h5_1',['h5',['../namespacehelmholtz.html#a1a82ee04b75adacdd2b9f69ccd318a83',1,'helmholtz::h5(std::array< double, 36 > fi, double w0t, double w1t, double w2t, double w0mt, double w1mt, double w2mt, double w0d, double w1d, double w2d, double w0md, double w1md, double w2md)'],['../namespacehelmholtz.html#a9a32be64f7f8465928548b2fa92ec524',1,'helmholtz::h5(double fi[36], double w0t, double w1t, double w2t, double w0mt, double w1mt, double w2mt, double w0d, double w1d, double w2d, double w0md, double w1md, double w2md)']]],
+  ['has_2',['has',['../class_constants.html#a2aa041fd223f259e55bf098c90581039',1,'Constants']]],
+  ['hassymbol_3',['hasSymbol',['../classcomposition_1_1_composition.html#a7dee1bb3074a6aa2842d4fffcac4d2c4',1,'composition::Composition']]],
+  ['he3he3_5frate_4',['he3he3_rate',['../namespacenn_approx8.html#a0adb7d9f97ced151a36f0d2aaa95011d',1,'nnApprox8']]],
+  ['he3he4_5frate_5',['he3he4_rate',['../namespacenn_approx8.html#a2e8c3f6a3752b706d200b5ecef2c3223',1,'nnApprox8']]],
+  ['heap_5fallocate_5fcontiguous_5f2d_5fmemory_6',['heap_allocate_contiguous_2D_memory',['../helm_8cpp.html#a0537c506d77a3dfea9b237aeb07f3281',1,'heap_allocate_contiguous_2D_memory(int rows, int cols): helm.cpp'],['../helm_8h.html#a0537c506d77a3dfea9b237aeb07f3281',1,'heap_allocate_contiguous_2D_memory(int rows, int cols): helm.cpp']]],
+  ['heap_5fdeallocate_5fcontiguous_5f2d_5fmemory_7',['heap_deallocate_contiguous_2D_memory',['../helm_8cpp.html#a82f032cfe64e2576c67986660cbe824d',1,'heap_deallocate_contiguous_2D_memory(double **array): helm.cpp'],['../helm_8h.html#a82f032cfe64e2576c67986660cbe824d',1,'heap_deallocate_contiguous_2D_memory(double **array): helm.cpp']]],
+  ['helmtable_8',['HELMTable',['../structhelmholtz_1_1_h_e_l_m_table.html#a0165aed3bb02b69a70934c8b7b185872',1,'helmholtz::HELMTable']]]
 ];

docs/html/search/functions_8.js

@@ -1,8 +1,14 @@
 var searchData=
 [
-  ['load_256',['load',['../classOpatIO.html#a3578ac9bad40dd45ada3459f92a93b56',1,'OpatIO']]],
-  ['lock_257',['lock',['../classLockableDObject.html#ade38ca54703913359fc3b4366f6e292a',1,'LockableDObject']]],
-  ['lockabledobject_258',['LockableDObject',['../classLockableDObject.html#ae1a174a2740fa053626fe2820ee0efee',1,'LockableDObject']]],
-  ['lookupclosesttableid_259',['lookupClosestTableID',['../classOpatIO.html#a82715d95a5ddd1e78470b90fbd005c4d',1,'OpatIO']]],
-  ['lookuptableid_260',['lookupTableID',['../classOpatIO.html#a1a4456b7745c0dd559eca72d5d744fc0',1,'OpatIO']]]
+  ['initialize_0',['initialize',['../class_constants.html#a60f87120b1eef774efe8c168aa69af6a',1,'Constants']]],
+  ['initlaize_5fopac_1',['initlaize_opac',['../opac_8h.html#a6243596bfdc55d73744ebecd9e577ee8',1,'opac.h']]],
+  ['isdebugenabled_2',['isDebugEnabled',['../class_metadata.html#abe52c81e04665628666b4140cd346b69',1,'Metadata']]],
+  ['isdebuggingenabled_3',['isDebuggingEnabled',['../class_d_object.html#ae47bf220fbe2173cf6933c2380035dbd',1,'DObject']]],
+  ['isfinalized_4',['isFinalized',['../class_polytrope_operator.html#aeb8d505244836212c9015205e486378a',1,'PolytropeOperator']]],
+  ['isloaded_5',['IsLoaded',['../class_mesh_i_o.html#a12495fc814254021d44e0509ac760672',1,'MeshIO']]],
+  ['isloaded_6',['isLoaded',['../class_constants.html#ae276dfdc0ffe75a53e3842e33ab52630',1,'Constants']]],
+  ['isotope_7',['isotope',['../structcomposition_1_1_composition_entry.html#a31b399ff8b24a6ebbfe4bb9ced7a2afa',1,'composition::CompositionEntry']]],
+  ['isstiff_8',['isStiff',['../classnn_approx8_1_1_approx8_network.html#a4b1600c394d4cf312c48e5ca82542a76',1,'nnApprox8::Approx8Network']]],
+  ['isvalidcomposition_9',['isValidComposition',['../classcomposition_1_1_composition.html#ac71fb70e029b4310e2bb4232e4270e96',1,'composition::Composition']]],
+  ['isvalidsymbol_10',['isValidSymbol',['../classcomposition_1_1_composition.html#a11a463394bf9110ac0f1a8b1df1384e9',1,'composition::Composition']]]
 ];

docs/html/search/mag_sel.svg

@@ -1,59 +1,17 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
 <!-- Created with Inkscape (http://www.inkscape.org/) -->
-
+<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
+ "https://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
 <svg
-   xmlns:dc="http://purl.org/dc/elements/1.1/"
-   xmlns:cc="http://creativecommons.org/ns#"
-   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
-   xmlns:svg="http://www.w3.org/2000/svg"
    xmlns="http://www.w3.org/2000/svg"
-   xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
-   xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
    version="1.1"
    id="svg2"
    width="20"
    height="19"
    viewBox="0 0 20 19"
-   sodipodi:docname="mag_sel.svg"
-   inkscape:version="0.92.5 (2060ec1f9f, 2020-04-08)">
-  <metadata
-     id="metadata8">
-    <rdf:RDF>
-      <cc:Work
-         rdf:about="">
-        <dc:format>image/svg+xml</dc:format>
-        <dc:type
-           rdf:resource="http://purl.org/dc/dcmitype/StillImage" />
-        <dc:title></dc:title>
-      </cc:Work>
-    </rdf:RDF>
-  </metadata>
+  >
   <defs
      id="defs6" />
-  <sodipodi:namedview
-     pagecolor="#ffffff"
-     bordercolor="#666666"
-     borderopacity="1"
-     objecttolerance="10"
-     gridtolerance="10"
-     guidetolerance="10"
-     inkscape:pageopacity="0"
-     inkscape:pageshadow="2"
-     inkscape:window-width="1920"
-     inkscape:window-height="2096"
-     id="namedview4"
-     showgrid="false"
-     fit-margin-top="0"
-     fit-margin-left="0"
-     fit-margin-right="0"
-     fit-margin-bottom="0"
-     inkscape:zoom="32"
-     inkscape:cx="5.9792688"
-     inkscape:cy="1.1436277"
-     inkscape:window-x="1920"
-     inkscape:window-y="27"
-     inkscape:window-maximized="0"
-     inkscape:current-layer="svg2" />
   <circle
      style="fill:#000000;fill-opacity:0;stroke:#656565;stroke-width:1.4;stroke-opacity:1;stroke-miterlimit:4;stroke-dasharray:none"
      id="path4611"
@@ -64,11 +22,10 @@
      style="fill:#656565;fill-opacity:1;stroke:none;stroke-width:1px;stroke-linecap:butt;stroke-linejoin:miter;stroke-opacity:1"
      d="M 11,7 13.5,10 16,7 Z"
      id="path4609"
-     inkscape:connector-curvature="0"
-     sodipodi:nodetypes="cccc" />
+     />
   <path
      style="fill:none;stroke:#656565;stroke-width:1.4;stroke-linecap:round;stroke-linejoin:miter;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1"
      d="m 8.1085854,11.109059 2.7823556,2.782356"
      id="path4630"
-     inkscape:connector-curvature="0" />
+     />
 </svg>

docs/html/search/related_0.js

@@ -1,4 +1,4 @@
 var searchData=
 [
-  ['operator_3c_3c_335',['operator<<',['../structConstant.html#ad298f7af7cdfd2e2267fd9e464558e2b',1,'Constant::operator<<()'],['../classDObject.html#a5b2896a287295bf59a0b9e4d0af21161',1,'DObject::operator<<()'],['../classMetadata.html#a9bc49cc23da2d1ff8b3e197630b9dfd2',1,'Metadata::operator<<()']]]
+  ['operator_3c_3c_0',['operator<<',['../structcomposition_1_1_global_composition.html#a3c072a749c3648607771ac9105181f26',1,'composition::GlobalComposition::operator<<()'],['../structcomposition_1_1_composition_entry.html#ae7a6a113fc5914248eff5629716d6eb2',1,'composition::CompositionEntry::operator<<()'],['../classcomposition_1_1_composition.html#a36c2525d21cd932065bb2bb30bc57fb4',1,'composition::Composition::operator<<()'],['../struct_constant.html#a387b3e0a55788b0ea04c77ba040c5aaa',1,'Constant::operator<<()'],['../class_d_object.html#aa54e75574f0302a2ca7252f9f0f0b3f1',1,'DObject::operator<<()'],['../class_metadata.html#a12949a1ea26c4ff1afeb97101c0493c5',1,'Metadata::operator<<()'],['../structhelmholtz_1_1_h_e_l_m_table.html#a65eea84782fc9b5b69b6f7f2ebf57940',1,'helmholtz::HELMTable::operator<<()'],['../structhelmholtz_1_1_e_o_s_input.html#ae6bc0662e64e05608593df6129ab8edb',1,'helmholtz::EOSInput::operator<<()'],['../structhelmholtz_1_1_e_o_s.html#a8071bdc90dec68ba933eb59c902a0b7b',1,'helmholtz::EOS::operator<<()']]]
 ];

docs/html/search/search.css

@@ -1,100 +1,116 @@
-/*---------------- Search Box */
+/*---------------- Search Box positioning */
 
-#FSearchBox {
-    float: left;
+#main-menu > li:last-child {
+    /* This <li> object is the parent of the search bar */
+    display: flex;
+    justify-content: center;
+    align-items: center;
+    height: 36px;
+    margin-right: 1em;
+}
+
+/*---------------- Search box styling */
+
+.SRPage * {
+    font-weight: normal;
+    line-height: normal;
+}
+
+dark-mode-toggle {
+    margin-left: 5px;
+    display: flex;
+    float: right;
 }
 
 #MSearchBox {
+    display: inline-block;
     white-space : nowrap;
-    float: none;
-    margin-top: 0px;
-    right: 0px;
-    width: 170px;
-    height: 24px;
+    background: white;
+    border-radius: 0.65em;
+    box-shadow: inset 0.5px 0.5px 3px 0px #555;
     z-index: 102;
-    display: inline;
-    position: absolute;
 }
 
-#MSearchBox .left
-{
-    display:block;
-    position:absolute;
-    left:10px;
-    width:20px;
-    height:19px;
-    background:url('search_l.png') no-repeat;
-    background-position:right;
+#MSearchBox .left {
+    display: inline-block;
+    vertical-align: middle;
+    height: 1.4em;
 }
 
 #MSearchSelect {
-    display:block;
-    position:absolute;
-    width:20px;
-    height:19px;
+    display: inline-block;
+    vertical-align: middle;
+    width: 20px;
+    height: 19px;
+    background-image: url('mag_sel.svg');
+    margin: 0 0 0 0.3em;
+    padding: 0;
 }
 
-.left #MSearchSelect {
-    left:4px;
+#MSearchSelectExt {
+    display: inline-block;
+    vertical-align: middle;
+    width: 10px;
+    height: 19px;
+    background-image: url('mag.svg');
+    margin: 0 0 0 0.5em;
+    padding: 0;
 }
 
-.right #MSearchSelect {
-    right:5px;
-}
 
 #MSearchField {
-    display:block;
-    position:absolute;
-    height:19px;
-    background:url('search_m.png') repeat-x;
+    display: inline-block;
+    vertical-align: middle;
+    width: 7.5em;
+    height: 19px;
+    margin: 0 0.15em;
+    padding: 0;
+    line-height: 1em;
     border:none;
-    width:111px;
-    margin-left:20px;
-    padding-left:4px;
     color: #909090;
     outline: none;
-    font: 9pt Arial, Verdana, sans-serif;
+    font-family: Arial,Verdana,sans-serif;
     -webkit-border-radius: 0px;
+    border-radius: 0px;
+    background: none;
 }
 
-#FSearchBox #MSearchField {
-    margin-left:15px;
+@media(hover: none) {
+    /* to avoid zooming on iOS */
+    #MSearchField {
+        font-size: 16px;
+    }
 }
 
 #MSearchBox .right {
-    display:block;
-    position:absolute;
-    right:10px;
-    top:0px;
-    width:20px;
-    height:19px;
-    background:url('search_r.png') no-repeat;
-    background-position:left;
+    display: inline-block;
+    vertical-align: middle;
+    width: 1.4em;
+    height: 1.4em;
 }
 
 #MSearchClose {
     display: none;
-    position: absolute;
-    top: 4px;
+    font-size: inherit;
     background : none;
     border: none;
-    margin: 0px 4px 0px 0px;
-    padding: 0px 0px;
+    margin: 0;
+    padding: 0;
     outline: none;
+
 }
 
-.left #MSearchClose {
-    left: 6px;
-}
-
-.right #MSearchClose {
-    right: 2px;
+#MSearchCloseImg {
+    padding: 0.3em;
+    margin: 0;
 }
 
 .MSearchBoxActive #MSearchField {
-    color: #000000;
+    color: black;
 }
 
+
+
 /*---------------- Search filter selection */
 
 #MSearchSelectWindow {
@@ -115,7 +131,7 @@
 }
 
 .SelectItem {
-    font: 8pt Arial, Verdana, sans-serif;
+    font: 8pt Arial,Verdana,sans-serif;
     padding-left:  2px;
     padding-right: 12px;
     border: 0px;
@@ -123,7 +139,7 @@
 
 span.SelectionMark {
     margin-right: 4px;
-    font-family: monospace;
+    font-family: 'JetBrains Mono',Consolas,Monaco,'Andale Mono','Ubuntu Mono',monospace,fixed;
     outline-style: none;
     text-decoration: none;
 }
@@ -131,7 +147,7 @@ span.SelectionMark {
 a.SelectItem {
     display: block;
     outline-style: none;
-    color: #000000; 
+    color: black;
     text-decoration: none;
     padding-left:   6px;
     padding-right: 12px;
@@ -139,13 +155,13 @@ a.SelectItem {
 
 a.SelectItem:focus,
 a.SelectItem:active {
-    color: #000000; 
+    color: black;
     outline-style: none;
     text-decoration: none;
 }
 
 a.SelectItem:hover {
-    color: #FFFFFF;
+    color: white;
     background-color: #3D578C;
     outline-style: none;
     text-decoration: none;
@@ -156,7 +172,7 @@ a.SelectItem:hover {
 /*---------------- Search results window */
 
 iframe#MSearchResults {
-    width: 60ex;
+    /*width: 60ex;*/
     height: 15em;
 }
 
@@ -164,9 +180,12 @@ iframe#MSearchResults {
     display: none;
     position: absolute;
     left: 0; top: 0;
-    border: 1px solid #000;
+    border: 1px solid black;
     background-color: #EEF1F7;
     z-index:10000;
+    width: 300px;
+    height: 400px;
+    overflow: auto;
 }
 
 /* ----------------------------------- */
@@ -174,7 +193,6 @@ iframe#MSearchResults {
 
 #SRIndex {
     clear:both; 
-    padding-bottom: 15px;
 }
 
 .SREntry {
@@ -187,8 +205,9 @@ iframe#MSearchResults {
     padding: 1px 5px;
 }
 
-body.SRPage {
+div.SRPage {
     margin: 5px 2px;
+    background-color: #EEF1F7;
 }
 
 .SRChildren {
@@ -200,17 +219,18 @@ body.SRPage {
 }
 
 .SRSymbol {
-    font-weight: bold; 
+    font-weight: bold;
     color: #425E97;
-    font-family: Arial, Verdana, sans-serif;
+    font-family: Arial,Verdana,sans-serif;
     text-decoration: none;
     outline: none;
 }
 
 a.SRScope {
     display: block;
-    color: #425E97; 
-    font-family: Arial, Verdana, sans-serif;
+    color: #425E97;
+    font-family: Arial,Verdana,sans-serif;
+    font-size: 8pt;
     text-decoration: none;
     outline: none;
 }
@@ -222,29 +242,27 @@ a.SRScope:focus, a.SRScope:active {
 
 span.SRScope {
     padding-left: 4px;
+    font-family: Arial,Verdana,sans-serif;
 }
 
 .SRPage .SRStatus {
     padding: 2px 5px;
     font-size: 8pt;
     font-style: italic;
+    font-family: Arial,Verdana,sans-serif;
 }
 
 .SRResult {
     display: none;
 }
 
-DIV.searchresults {
+div.searchresults {
     margin-left: 10px;
     margin-right: 10px;
 }
 
 /*---------------- External search page results */
 
-.searchresult {
-    background-color: #F0F3F8;
-}
-
 .pages b {
    color: white;
    padding: 5px 5px 3px 5px;

docs/html/search/searchdata.js

@@ -1,39 +1,42 @@
 var indexSectionsWithContent =
 {
-  0: "_abcdeghiklmnoprstuvwx~",
-  1: "bcdhlmnot",
-  2: "_cdlmoprt",
-  3: "abcdghiklmnoprstuvwx~",
-  4: "bcdehilmnorsuv",
-  5: "dp",
-  6: "o",
-  7: "e",
-  8: "ot"
+  0: "4abcdefghijklmnopqrstuvwxyz~",
+  1: "acdefghjlmnoprsx",
+  2: "chlnps",
+  3: "4acdehilmnoprtuw",
+  4: "abcdefghiklmnoprstuvwx~",
+  5: "abcdefgijlmnopqrstuvxyz",
+  6: "ademprv",
+  7: "o",
+  8: "bdeijst",
+  9: "4acelst"
 };
 
 var indexSectionNames =
 {
   0: "all",
   1: "classes",
-  2: "files",
-  3: "functions",
-  4: "variables",
-  5: "typedefs",
-  6: "related",
-  7: "defines",
-  8: "pages"
+  2: "namespaces",
+  3: "files",
+  4: "functions",
+  5: "variables",
+  6: "typedefs",
+  7: "related",
+  8: "defines",
+  9: "pages"
 };
 
 var indexSectionLabels =
 {
   0: "All",
   1: "Classes",
-  2: "Files",
-  3: "Functions",
-  4: "Variables",
-  5: "Typedefs",
-  6: "Friends",
-  7: "Macros",
-  8: "Pages"
+  2: "Namespaces",
+  3: "Files",
+  4: "Functions",
+  5: "Variables",
+  6: "Typedefs",
+  7: "Friends",
+  8: "Macros",
+  9: "Pages"
 };
 

docs/html/search/typedefs_0.js

@@ -1,4 +1,4 @@
 var searchData=
 [
-  ['datatype_333',['DataType',['../classDObject.html#a79a2ecac4130ef3df272bdfeed26a620',1,'DObject']]]
+  ['array2d_0',['array2D',['../helm_8h.html#a78b5688d4effa2bab8f6e87e440e7c63',1,'helm.h']]]
 ];

docs/html/search/typedefs_1.js

@@ -1,4 +1,4 @@
 var searchData=
 [
-  ['plugin_334',['Plugin',['../classDObject.html#af11334d08ef85c68b3aae7554548e5a7',1,'DObject']]]
+  ['datatype_0',['DataType',['../class_d_object.html#a55b7cdac36a3a518ba6e1ecef0e25dcd',1,'DObject']]]
 ];