diff --git a/Doxyfile b/Doxyfile index 65c1f2e..0dd57ca 100644 --- a/Doxyfile +++ b/Doxyfile @@ -349,7 +349,7 @@ OPTIMIZE_OUTPUT_SLICE = NO # # Note see also the list of default file extension mappings. -EXTENSION_MAPPING = +EXTENSION_MAPPING = py=C++ # If the MARKDOWN_SUPPORT tag is enabled then Doxygen pre-processes all comments # according to the Markdown format, which allows for more readable @@ -534,7 +534,7 @@ TIMESTAMP = NO # normally produced when WARNINGS is set to YES. # The default value is: NO. -EXTRACT_ALL = NO +EXTRACT_ALL = YES # If the EXTRACT_PRIVATE tag is set to YES, all private members of a class will # be included in the documentation. @@ -991,7 +991,7 @@ WARN_LOGFILE = # spaces. See also FILE_PATTERNS and EXTENSION_MAPPING # Note: If this tag is empty the current directory is searched. -INPUT = src tests +INPUT = src tests utils/opatio # This tag can be used to specify the character encoding of the source files # that Doxygen parses. Internally Doxygen uses the UTF-8 encoding. Doxygen uses diff --git a/docs/html/annotated.html b/docs/html/annotated.html index c54be4f..2a854ec 100644 --- a/docs/html/annotated.html +++ b/docs/html/annotated.html @@ -98,16 +98,20 @@ $(document).ready(function(){initNavTree('annotated.html',''); initResizable();
Here are the classes, structs, unions and interfaces with brief descriptions:
- - - - - - + + + + + + + + + +
 CCell
 CconstantStructure to hold a constant's details
 CconstantsClass to manage a collection of constants
 CconstTestTest suite for the const class
 CDObjectA universal data container class
 CDObjectTestTest suite for the DObject class
 CConstantStructure to hold a constant's details
 CConstantsClass to manage a collection of constants
 CconstTestTest suite for the const class
 CDObjectA universal data container class
 CDObjectTestTest suite for the DObject class
 CHeaderStructure to hold the header information of an OPAT file
 CLockableDObjectWrapper for DObject with thread-safe access
 CLockableDObjectTestTest suite for the LockableDObject class
 CMetadataRepresents metadata information for data objects in the dobj module
 CMetadataTestTest suite for the Metadata class
 COpatIOClass to manage the input/output operations for OPAT files
 CopatIOTestTest suite for the const class
 COPATTableStructure to hold the data of an OPAT table
 CTableIndexStructure to hold the index information of a table in an OPAT file
diff --git a/docs/html/annotated_dup.js b/docs/html/annotated_dup.js index 6ff9046..9eb4f4d 100644 --- a/docs/html/annotated_dup.js +++ b/docs/html/annotated_dup.js @@ -1,13 +1,17 @@ var annotated_dup = [ - [ "Cell", "classCell.html", "classCell" ], - [ "constant", "structconstant.html", "structconstant" ], - [ "constants", "classconstants.html", "classconstants" ], + [ "Constant", "structConstant.html", "structConstant" ], + [ "Constants", "classConstants.html", "classConstants" ], [ "constTest", "classconstTest.html", "classconstTest" ], [ "DObject", "classDObject.html", "classDObject" ], [ "DObjectTest", "classDObjectTest.html", "classDObjectTest" ], + [ "Header", "structHeader.html", "structHeader" ], [ "LockableDObject", "classLockableDObject.html", "classLockableDObject" ], [ "LockableDObjectTest", "classLockableDObjectTest.html", "classLockableDObjectTest" ], [ "Metadata", "classMetadata.html", "classMetadata" ], - [ "MetadataTest", "classMetadataTest.html", "classMetadataTest" ] + [ "MetadataTest", "classMetadataTest.html", "classMetadataTest" ], + [ "OpatIO", "classOpatIO.html", "classOpatIO" ], + [ "opatIOTest", "classopatIOTest.html", null ], + [ "OPATTable", "structOPATTable.html", "structOPATTable" ], + [ "TableIndex", "structTableIndex.html", "structTableIndex" ] ]; \ No newline at end of file diff --git a/docs/html/classes.html b/docs/html/classes.html index 80350c5..a5643d6 100644 --- a/docs/html/classes.html +++ b/docs/html/classes.html @@ -96,20 +96,29 @@ $(document).ready(function(){initNavTree('classes.html',''); initResizable(); })
Class Index
-
C | D | L | M
+
C | D | H | L | M | O | T
C
-
Cell
constant
constants
constTest
+
Constant
Constants
constTest
D
DObject
DObjectTest
+
H
+
Header
+
L
LockableDObject
LockableDObjectTest
-
+
M
Metadata
MetadataTest
+
+
O
+
OpatIO
opatIOTest
OPATTable
+
+
T
+
TableIndex
diff --git a/docs/html/dir_4e6f6de88c62da29e0ddd0d8e63af038.html b/docs/html/dir_4e6f6de88c62da29e0ddd0d8e63af038.html index e7ed69a..45c78cc 100644 --- a/docs/html/dir_4e6f6de88c62da29e0ddd0d8e63af038.html +++ b/docs/html/dir_4e6f6de88c62da29e0ddd0d8e63af038.html @@ -102,6 +102,8 @@ Files file  DObject.cpp  Implementation of the DObject class.
  +file  LockableDObject.cpp +  file  Metadata.cpp  Implementation of the Metadata class used in the dobj module.
  diff --git a/docs/html/dir_4e6f6de88c62da29e0ddd0d8e63af038.js b/docs/html/dir_4e6f6de88c62da29e0ddd0d8e63af038.js index 1269c86..6959778 100644 --- a/docs/html/dir_4e6f6de88c62da29e0ddd0d8e63af038.js +++ b/docs/html/dir_4e6f6de88c62da29e0ddd0d8e63af038.js @@ -1,5 +1,6 @@ var dir_4e6f6de88c62da29e0ddd0d8e63af038 = [ [ "DObject.cpp", "DObject_8cpp.html", "DObject_8cpp" ], + [ "LockableDObject.cpp", "LockableDObject_8cpp.html", null ], [ "Metadata.cpp", "Metadata_8cpp.html", "Metadata_8cpp" ] ]; \ No newline at end of file diff --git a/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html b/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html index da4948a..3aaedcd 100644 --- a/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html +++ b/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html @@ -96,6 +96,18 @@ $(document).ready(function(){initNavTree('dir_68267d1309a1af8e8297ef4c3efbcdba.h
src Directory Reference
+ + + + + + + + + + +

+Directories

directory  const
 
directory  dobj
 
directory  opac
 
directory  opatIO
 
diff --git a/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.js b/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.js index 0f13a4f..5ec2ee3 100644 --- a/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.js +++ b/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.js @@ -2,7 +2,6 @@ var dir_68267d1309a1af8e8297ef4c3efbcdba = [ [ "const", "dir_409882efad9ab48a895cd8b217d1e026.html", "dir_409882efad9ab48a895cd8b217d1e026" ], [ "dobj", "dir_768194193337d64eaa7edd2c5f5038a4.html", "dir_768194193337d64eaa7edd2c5f5038a4" ], - [ "mapping", "dir_5300298560c4bf255ab9f36681603d89.html", "dir_5300298560c4bf255ab9f36681603d89" ], - [ "mesh", "dir_7be0d8c199b9408ae01f5d77515b8def.html", "dir_7be0d8c199b9408ae01f5d77515b8def" ], - [ "opac", "dir_98811334950283dfb0b975440d5272eb.html", "dir_98811334950283dfb0b975440d5272eb" ] + [ "opac", "dir_98811334950283dfb0b975440d5272eb.html", "dir_98811334950283dfb0b975440d5272eb" ], + [ "opatIO", "dir_dc4574cef47f5b50114efcdd6e195baf.html", "dir_dc4574cef47f5b50114efcdd6e195baf" ] ]; \ No newline at end of file diff --git a/docs/html/dir_768194193337d64eaa7edd2c5f5038a4.html b/docs/html/dir_768194193337d64eaa7edd2c5f5038a4.html index fd2ea4f..9da54d9 100644 --- a/docs/html/dir_768194193337d64eaa7edd2c5f5038a4.html +++ b/docs/html/dir_768194193337d64eaa7edd2c5f5038a4.html @@ -99,6 +99,10 @@ $(document).ready(function(){initNavTree('dir_768194193337d64eaa7edd2c5f5038a4.h + + + +

Directories

directory  private
 
directory  public
 
diff --git a/docs/html/files.html b/docs/html/files.html index a8794f2..32dc4ec 100644 --- a/docs/html/files.html +++ b/docs/html/files.html @@ -96,37 +96,57 @@ $(document).ready(function(){initNavTree('files.html',''); initResizable(); });
File List
-
Here is a list of all documented files with brief descriptions:
-
[detail level 1234]
+
Here is a list of all files with brief descriptions:
+
[detail level 1234567]
- - + + + + - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
 ▼ src
 ▼ const
 ▼ public
 const.h
 ▼ private
 const.cpp
 ▼ public
 const.h
 ▼ dobj
 ▼ private
 DObject.cppImplementation of the DObject class
 Metadata.cppImplementation of the Metadata class used in the dobj module
 ▼ public
 DObject.hDefines the DObject class, a universal data container for the project
 LockableDObject.hA lightweight wrapper for DObject that adds locking capabilities
 Metadata.hPublic interface for the Metadata class used in the dobj module
 ▼ mapping
 ▼ private
 grid.h
 mapper.h
 ▼ mesh
 ▼ public
 mesh.h
 ▼ opac
 ▼ public
 opac.h
 ▼ tests
 ▼ const
 constTest.cppUnit tests for the const class
 ▼ dobj
 DObjectTest.cppUnit tests for the DObject class
 LockableDObjectTest.cppUnit tests for the LockableDObject class
 MetadataTest.cppUnit tests and integration tests for the Metadata class
 LockableDObject.cpp
 Metadata.cppImplementation of the Metadata class used in the dobj module
 ▼ public
 DObject.hDefines the DObject class, a universal data container for the project
 LockableDObject.hA lightweight wrapper for DObject that adds locking capabilities
 Metadata.hPublic interface for the Metadata class used in the dobj module
 ▼ opac
 ▼ public
 opac.h
 ▼ opatIO
 ▼ private
 opatIO.cpp
 ▼ public
 opatIO.h
 ▼ tests
 ▼ const
 constTest.cppUnit tests for the const class
 ▼ dobj
 DObjectTest.cppUnit tests for the DObject class
 LockableDObjectTest.cppUnit tests for the LockableDObject class
 MetadataTest.cppUnit tests and integration tests for the Metadata class
 ▼ dobj_sandbox
 testDObject.cpp
 ▼ opatIO
 opatIOTest.cppUnit tests for the OpatIO class and associated structs
 ▼ utils
 ▼ opatio
 ▼ build
 ▼ lib
 ▼ opatio
 ▼ opat
 __init__.py
 opat.py
 __init__.py
 ▼ src
 ▼ opatio
 ▼ opat
 __init__.py
 opat.py
 __init__.py
diff --git a/docs/html/files_dup.js b/docs/html/files_dup.js index e47e81a..ae2945d 100644 --- a/docs/html/files_dup.js +++ b/docs/html/files_dup.js @@ -1,5 +1,6 @@ var files_dup = [ [ "src", "dir_68267d1309a1af8e8297ef4c3efbcdba.html", "dir_68267d1309a1af8e8297ef4c3efbcdba" ], - [ "tests", "dir_59425e443f801f1f2fd8bbe4959a3ccf.html", "dir_59425e443f801f1f2fd8bbe4959a3ccf" ] + [ "tests", "dir_59425e443f801f1f2fd8bbe4959a3ccf.html", "dir_59425e443f801f1f2fd8bbe4959a3ccf" ], + [ "utils", "dir_cbdb8362360e11eafe2fa3bc74cf0ffd.html", "dir_cbdb8362360e11eafe2fa3bc74cf0ffd" ] ]; \ No newline at end of file diff --git a/docs/html/functions.html b/docs/html/functions.html index b82dbf0..1e25598 100644 --- a/docs/html/functions.html +++ b/docs/html/functions.html @@ -92,11 +92,27 @@ $(document).ready(function(){initNavTree('functions.html',''); initResizable();
-
Here is a list of all documented class members with links to the class documentation for each member:
+
Here is a list of all class members with links to the classes they belong to:
+ +

- b -

+

- c -

@@ -105,6 +121,12 @@ $(document).ready(function(){initNavTree('functions.html',''); initResizable();
  • DataType : DObject
    • +
  • dataTypeMap +: DObject +
    • +
  • defaultObject +: DObjectTest +
  • DObject() : DObject
    • @@ -113,12 +135,21 @@ $(document).ready(function(){initNavTree('functions.html',''); initResizable();

    - g -

    - h -

    - i -

    - k -

    - l -

    - m -

    - r -

    + + +

    - t -

    - u -

    diff --git a/docs/html/functions_func.html b/docs/html/functions_func.html index 5a9fe32..88f1087 100644 --- a/docs/html/functions_func.html +++ b/docs/html/functions_func.html @@ -95,8 +95,8 @@ $(document).ready(function(){initNavTree('functions_func.html',''); initResizabl  

    - c -

    @@ -110,12 +110,21 @@ $(document).ready(function(){initNavTree('functions_func.html',''); initResizabl

    - g -

    - h -

    - i -

    - k -

    - l -

    @@ -182,8 +216,24 @@ $(document).ready(function(){initNavTree('functions_func.html',''); initResizabl

    - o -

    + + +

    - p -

    @@ -223,10 +273,32 @@ $(document).ready(function(){initNavTree('functions_func.html',''); initResizabl
  • setErrorCode() : DObject
    • +
  • setFilename() +: OpatIO +
    • +
  • setMaxQDepth() +: OpatIO +
    • +
  • SetUp() +: constTest +, DObjectTest +, LockableDObjectTest +, MetadataTest +
    • + + + +

    - t -

    - u -

    + + +

    - ~ -

    diff --git a/docs/html/functions_rela.html b/docs/html/functions_rela.html index b71965e..2486401 100644 --- a/docs/html/functions_rela.html +++ b/docs/html/functions_rela.html @@ -94,7 +94,8 @@ $(document).ready(function(){initNavTree('functions_rela.html',''); initResizabl
      diff --git a/docs/html/globals.html b/docs/html/globals.html index e64acd0..4034430 100644 --- a/docs/html/globals.html +++ b/docs/html/globals.html @@ -92,19 +92,65 @@ $(document).ready(function(){initNavTree('globals.html',''); initResizable(); })
    -
    Here is a list of all documented file members with links to the documentation:
    diff --git a/docs/html/globals_func.html b/docs/html/globals_func.html index 76f4c54..9a13933 100644 --- a/docs/html/globals_func.html +++ b/docs/html/globals_func.html @@ -92,19 +92,52 @@ $(document).ready(function(){initNavTree('globals_func.html',''); initResizable(
    - 
    diff --git a/docs/html/navtreedata.js b/docs/html/navtreedata.js index c7b4bc4..8523d97 100644 --- a/docs/html/navtreedata.js +++ b/docs/html/navtreedata.js @@ -25,6 +25,11 @@ var NAVTREE = [ [ "New 4DSSE Code", "index.html", [ + [ "opatIO python module", "md_utils_opatio_readme.html", [ + [ "Installation", "md_utils_opatio_readme.html#autotoc_md1", null ], + [ "General Usage", "md_utils_opatio_readme.html#autotoc_md2", null ], + [ "Problems", "md_utils_opatio_readme.html#autotoc_md3", null ] + ] ], [ "Test List", "test.html", null ], [ "Classes", "annotated.html", [ [ "Class List", "annotated.html", "annotated_dup" ], @@ -42,7 +47,9 @@ var NAVTREE = [ "File List", "files.html", "files_dup" ], [ "File Members", "globals.html", [ [ "All", "globals.html", null ], - [ "Functions", "globals_func.html", null ] + [ "Functions", "globals_func.html", null ], + [ "Variables", "globals_vars.html", null ], + [ "Macros", "globals_defs.html", null ] ] ] ] ] ] ] diff --git 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afd5d7d..825365b 100644 --- a/docs/html/search/functions_8.js +++ b/docs/html/search/functions_8.js @@ -1,5 +1,6 @@ var searchData= [ - ['operator_3c_3c_93',['operator<<',['../DObject_8cpp.html#a5b2896a287295bf59a0b9e4d0af21161',1,'operator<<(std::ostream &os, const DObject &obj): DObject.cpp'],['../Metadata_8cpp.html#a9bc49cc23da2d1ff8b3e197630b9dfd2',1,'operator<<(std::ostream &os, const Metadata &metadata): Metadata.cpp']]], - ['operator_5b_5d_94',['operator[]',['../classconstants.html#a32d515b1f539f6fdfc654ed5c8cba8e0',1,'constants']]] + ['opatio_188',['OpatIO',['../classOpatIO.html#a7f3436b3ac0dbe141b08d8064550f1b3',1,'OpatIO::OpatIO()'],['../classOpatIO.html#ae24b6a4f78529c4fe4719ea5438d5ed6',1,'OpatIO::OpatIO(std::string filename)']]], + ['operator_3c_3c_189',['operator<<',['../DObject_8cpp.html#a5b2896a287295bf59a0b9e4d0af21161',1,'operator<<(std::ostream &os, const DObject &obj): DObject.cpp'],['../Metadata_8cpp.html#a9bc49cc23da2d1ff8b3e197630b9dfd2',1,'operator<<(std::ostream &os, const Metadata &metadata): Metadata.cpp']]], + ['operator_5b_5d_190',['operator[]',['../classConstants.html#ad75620743b867fc20d4a05027d1a1c01',1,'Constants']]] ]; diff --git a/docs/html/search/related_0.js b/docs/html/search/related_0.js index 3c77549..47c9688 100644 --- a/docs/html/search/related_0.js +++ b/docs/html/search/related_0.js @@ -1,4 +1,4 @@ var searchData= [ - ['operator_3c_3c_115',['operator<<',['../classDObject.html#a5b2896a287295bf59a0b9e4d0af21161',1,'DObject::operator<<()'],['../classMetadata.html#a9bc49cc23da2d1ff8b3e197630b9dfd2',1,'Metadata::operator<<()']]] + ['operator_3c_3c_247',['operator<<',['../structConstant.html#ad298f7af7cdfd2e2267fd9e464558e2b',1,'Constant::operator<<()'],['../classDObject.html#a5b2896a287295bf59a0b9e4d0af21161',1,'DObject::operator<<()'],['../classMetadata.html#a9bc49cc23da2d1ff8b3e197630b9dfd2',1,'Metadata::operator<<()']]] ]; diff --git a/docs/html/search/searchdata.js b/docs/html/search/searchdata.js index b35ab66..759406a 100644 --- a/docs/html/search/searchdata.js +++ b/docs/html/search/searchdata.js @@ -1,13 +1,14 @@ var indexSectionsWithContent = { - 0: "cdghiklmnoprstuv", - 1: "cdlm", - 2: "cdlm", - 3: "cdghiklmorstu", - 4: "nruv", + 0: "_bcdeghiklmnoprstuvxz~", + 1: "cdhlmot", + 2: "_cdlmort", + 3: "cdghiklmoprstu~", + 4: "bcdehilmnorsuvxz", 5: "dp", 6: "o", - 7: "t" + 7: "e", + 8: "ot" }; var indexSectionNames = @@ -19,7 +20,8 @@ var indexSectionNames = 4: "variables", 5: "typedefs", 6: "related", - 7: "pages" + 7: "defines", + 8: "pages" }; var indexSectionLabels = @@ -31,6 +33,7 @@ var indexSectionLabels = 4: "Variables", 5: "Typedefs", 6: "Friends", - 7: "Pages" + 7: "Macros", + 8: "Pages" }; diff --git a/docs/html/search/typedefs_0.js b/docs/html/search/typedefs_0.js index 4274e36..a5090f1 100644 --- a/docs/html/search/typedefs_0.js +++ b/docs/html/search/typedefs_0.js @@ -1,4 +1,4 @@ var searchData= [ - ['datatype_113',['DataType',['../classDObject.html#a79a2ecac4130ef3df272bdfeed26a620',1,'DObject']]] + ['datatype_245',['DataType',['../classDObject.html#a79a2ecac4130ef3df272bdfeed26a620',1,'DObject']]] ]; diff --git a/docs/html/search/typedefs_1.js b/docs/html/search/typedefs_1.js index 1428905..4c61099 100644 --- a/docs/html/search/typedefs_1.js +++ b/docs/html/search/typedefs_1.js @@ -1,4 +1,4 @@ var searchData= [ - ['plugin_114',['Plugin',['../classDObject.html#af11334d08ef85c68b3aae7554548e5a7',1,'DObject']]] + ['plugin_246',['Plugin',['../classDObject.html#af11334d08ef85c68b3aae7554548e5a7',1,'DObject']]] ]; diff --git a/docs/latex/annotated.tex b/docs/latex/annotated.tex index e1886c5..de9ce65 100644 --- a/docs/latex/annotated.tex +++ b/docs/latex/annotated.tex @@ -1,13 +1,17 @@ \doxysection{Class List} Here are the classes, structs, unions and interfaces with brief descriptions\+:\begin{DoxyCompactList} -\item\contentsline{section}{\mbox{\hyperlink{classCell}{Cell}} }{\pageref{classCell}}{} -\item\contentsline{section}{\mbox{\hyperlink{structconstant}{constant}} \\*Structure to hold a constant\textquotesingle{}s details }{\pageref{structconstant}}{} -\item\contentsline{section}{\mbox{\hyperlink{classconstants}{constants}} \\*Class to manage a collection of constants }{\pageref{classconstants}}{} +\item\contentsline{section}{\mbox{\hyperlink{structConstant}{Constant}} \\*Structure to hold a constant\textquotesingle{}s details }{\pageref{structConstant}}{} +\item\contentsline{section}{\mbox{\hyperlink{classConstants}{Constants}} \\*Class to manage a collection of constants }{\pageref{classConstants}}{} \item\contentsline{section}{\mbox{\hyperlink{classconstTest}{const\+Test}} \\*Test suite for the const class }{\pageref{classconstTest}}{} \item\contentsline{section}{\mbox{\hyperlink{classDObject}{DObject}} \\*A universal data container class }{\pageref{classDObject}}{} \item\contentsline{section}{\mbox{\hyperlink{classDObjectTest}{DObject\+Test}} \\*Test suite for the \mbox{\hyperlink{classDObject}{DObject}} class }{\pageref{classDObjectTest}}{} +\item\contentsline{section}{\mbox{\hyperlink{structHeader}{Header}} \\*Structure to hold the header information of an OPAT file }{\pageref{structHeader}}{} \item\contentsline{section}{\mbox{\hyperlink{classLockableDObject}{Lockable\+DObject}} \\*Wrapper for \mbox{\hyperlink{classDObject}{DObject}} with thread-\/safe access }{\pageref{classLockableDObject}}{} \item\contentsline{section}{\mbox{\hyperlink{classLockableDObjectTest}{Lockable\+DObject\+Test}} \\*Test suite for the \mbox{\hyperlink{classLockableDObject}{Lockable\+DObject}} class }{\pageref{classLockableDObjectTest}}{} \item\contentsline{section}{\mbox{\hyperlink{classMetadata}{Metadata}} \\*Represents metadata information for data objects in the dobj module }{\pageref{classMetadata}}{} \item\contentsline{section}{\mbox{\hyperlink{classMetadataTest}{Metadata\+Test}} \\*Test suite for the \mbox{\hyperlink{classMetadata}{Metadata}} class }{\pageref{classMetadataTest}}{} +\item\contentsline{section}{\mbox{\hyperlink{classOpatIO}{Opat\+IO}} \\*Class to manage the input/output operations for OPAT files }{\pageref{classOpatIO}}{} +\item\contentsline{section}{\mbox{\hyperlink{classopatIOTest}{opat\+IOTest}} \\*Test suite for the const class }{\pageref{classopatIOTest}}{} +\item\contentsline{section}{\mbox{\hyperlink{structOPATTable}{OPATTable}} \\*Structure to hold the data of an OPAT table }{\pageref{structOPATTable}}{} +\item\contentsline{section}{\mbox{\hyperlink{structTableIndex}{Table\+Index}} \\*Structure to hold the index information of a table in an OPAT file }{\pageref{structTableIndex}}{} \end{DoxyCompactList} diff --git a/docs/latex/files.tex b/docs/latex/files.tex index 54ea8c7..8c6e34f 100644 --- a/docs/latex/files.tex +++ b/docs/latex/files.tex @@ -1,17 +1,26 @@ \doxysection{File List} -Here is a list of all documented files with brief descriptions\+:\begin{DoxyCompactList} -\item\contentsline{section}{src/const/public/{\bfseries const.\+h} }{\pageref{const_8h}}{} +Here is a list of all files with brief descriptions\+:\begin{DoxyCompactList} +\item\contentsline{section}{src/const/private/\mbox{\hyperlink{const_8cpp}{const.\+cpp}} }{\pageref{const_8cpp}}{} +\item\contentsline{section}{src/const/public/\mbox{\hyperlink{const_8h}{const.\+h}} }{\pageref{const_8h}}{} \item\contentsline{section}{src/dobj/private/\mbox{\hyperlink{DObject_8cpp}{DObject.\+cpp}} \\*Implementation of the \mbox{\hyperlink{classDObject}{DObject}} class }{\pageref{DObject_8cpp}}{} +\item\contentsline{section}{src/dobj/private/\mbox{\hyperlink{LockableDObject_8cpp}{Lockable\+DObject.\+cpp}} }{\pageref{LockableDObject_8cpp}}{} \item\contentsline{section}{src/dobj/private/\mbox{\hyperlink{Metadata_8cpp}{Metadata.\+cpp}} \\*Implementation of the \mbox{\hyperlink{classMetadata}{Metadata}} class used in the dobj module }{\pageref{Metadata_8cpp}}{} \item\contentsline{section}{src/dobj/public/\mbox{\hyperlink{DObject_8h}{DObject.\+h}} \\*Defines the \mbox{\hyperlink{classDObject}{DObject}} class, a universal data container for the project }{\pageref{DObject_8h}}{} \item\contentsline{section}{src/dobj/public/\mbox{\hyperlink{LockableDObject_8h}{Lockable\+DObject.\+h}} \\*A lightweight wrapper for \mbox{\hyperlink{classDObject}{DObject}} that adds locking capabilities }{\pageref{LockableDObject_8h}}{} \item\contentsline{section}{src/dobj/public/\mbox{\hyperlink{Metadata_8h}{Metadata.\+h}} \\*Public interface for the \mbox{\hyperlink{classMetadata}{Metadata}} class used in the dobj module }{\pageref{Metadata_8h}}{} -\item\contentsline{section}{src/mapping/private/{\bfseries grid.\+h} }{\pageref{grid_8h}}{} -\item\contentsline{section}{src/mapping/private/{\bfseries mapper.\+h} }{\pageref{mapper_8h}}{} -\item\contentsline{section}{src/mesh/public/{\bfseries mesh.\+h} }{\pageref{mesh_8h}}{} -\item\contentsline{section}{src/opac/public/{\bfseries opac.\+h} }{\pageref{opac_8h}}{} +\item\contentsline{section}{src/opac/public/\mbox{\hyperlink{opac_8h}{opac.\+h}} }{\pageref{opac_8h}}{} +\item\contentsline{section}{src/opat\+IO/private/\mbox{\hyperlink{opatIO_8cpp}{opat\+IO.\+cpp}} }{\pageref{opatIO_8cpp}}{} +\item\contentsline{section}{src/opat\+IO/public/\mbox{\hyperlink{opatIO_8h}{opat\+IO.\+h}} }{\pageref{opatIO_8h}}{} \item\contentsline{section}{tests/const/\mbox{\hyperlink{constTest_8cpp}{const\+Test.\+cpp}} \\*Unit tests for the const class }{\pageref{constTest_8cpp}}{} \item\contentsline{section}{tests/dobj/\mbox{\hyperlink{DObjectTest_8cpp}{DObject\+Test.\+cpp}} \\*Unit tests for the \mbox{\hyperlink{classDObject}{DObject}} class }{\pageref{DObjectTest_8cpp}}{} \item\contentsline{section}{tests/dobj/\mbox{\hyperlink{LockableDObjectTest_8cpp}{Lockable\+DObject\+Test.\+cpp}} \\*Unit tests for the \mbox{\hyperlink{classLockableDObject}{Lockable\+DObject}} class }{\pageref{LockableDObjectTest_8cpp}}{} \item\contentsline{section}{tests/dobj/\mbox{\hyperlink{MetadataTest_8cpp}{Metadata\+Test.\+cpp}} \\*Unit tests and integration tests for the \mbox{\hyperlink{classMetadata}{Metadata}} class }{\pageref{MetadataTest_8cpp}}{} +\item\contentsline{section}{tests/dobj\+\_\+sandbox/\mbox{\hyperlink{testDObject_8cpp}{test\+DObject.\+cpp}} }{\pageref{testDObject_8cpp}}{} +\item\contentsline{section}{tests/opat\+IO/\mbox{\hyperlink{opatIOTest_8cpp}{opat\+IOTest.\+cpp}} \\*Unit tests for the \mbox{\hyperlink{classOpatIO}{Opat\+IO}} class and associated structs }{\pageref{opatIOTest_8cpp}}{} +\item\contentsline{section}{utils/opatio/build/lib/opatio/\mbox{\hyperlink{build_2lib_2opatio_2____init_____8py}{\+\_\+\+\_\+init\+\_\+\+\_\+.\+py}} }{\pageref{build_2lib_2opatio_2____init_____8py}}{} +\item\contentsline{section}{utils/opatio/build/lib/opatio/opat/\mbox{\hyperlink{build_2lib_2opatio_2opat_2____init_____8py}{\+\_\+\+\_\+init\+\_\+\+\_\+.\+py}} }{\pageref{build_2lib_2opatio_2opat_2____init_____8py}}{} +\item\contentsline{section}{utils/opatio/build/lib/opatio/opat/\mbox{\hyperlink{build_2lib_2opatio_2opat_2opat_8py}{opat.\+py}} }{\pageref{build_2lib_2opatio_2opat_2opat_8py}}{} +\item\contentsline{section}{utils/opatio/src/opatio/\mbox{\hyperlink{src_2opatio_2____init_____8py}{\+\_\+\+\_\+init\+\_\+\+\_\+.\+py}} }{\pageref{src_2opatio_2____init_____8py}}{} +\item\contentsline{section}{utils/opatio/src/opatio/opat/\mbox{\hyperlink{src_2opatio_2opat_2____init_____8py}{\+\_\+\+\_\+init\+\_\+\+\_\+.\+py}} }{\pageref{src_2opatio_2opat_2____init_____8py}}{} +\item\contentsline{section}{utils/opatio/src/opatio/opat/\mbox{\hyperlink{src_2opatio_2opat_2opat_8py}{opat.\+py}} }{\pageref{src_2opatio_2opat_2opat_8py}}{} \end{DoxyCompactList} diff --git a/docs/latex/refman.tex b/docs/latex/refman.tex index 4048eaf..17db990 100644 --- a/docs/latex/refman.tex +++ b/docs/latex/refman.tex @@ -171,6 +171,10 @@ \hypersetup{pageanchor=true} %--- Begin generated contents --- +\chapter{opat\+IO python module} +\label{md_utils_opatio_readme} +\Hypertarget{md_utils_opatio_readme} +\input{md_utils_opatio_readme} \chapter{Test List} \label{test} \Hypertarget{test} @@ -182,26 +186,45 @@ \chapter{File Index} \input{files} \chapter{Class Documentation} -\input{classCell} -\input{structconstant} -\input{classconstants} +\input{structConstant} +\input{classConstants} \input{classconstTest} \input{classDObject} \input{classDObjectTest} +\input{structHeader} \input{classLockableDObject} \input{classLockableDObjectTest} \input{classMetadata} \input{classMetadataTest} +\input{classOpatIO} +\input{classopatIOTest} +\input{structOPATTable} +\input{structTableIndex} \chapter{File Documentation} +\input{const_8cpp} +\input{const_8h} \input{DObject_8cpp} +\input{LockableDObject_8cpp} \input{Metadata_8cpp} \input{DObject_8h} \input{LockableDObject_8h} \input{Metadata_8h} +\input{opac_8h} +\input{opatIO_8cpp} +\input{opatIO_8h} \input{constTest_8cpp} \input{DObjectTest_8cpp} \input{LockableDObjectTest_8cpp} \input{MetadataTest_8cpp} +\input{testDObject_8cpp} +\input{opatIOTest_8cpp} +\input{build_2lib_2opatio_2____init_____8py} +\input{build_2lib_2opatio_2opat_2____init_____8py} +\input{src_2opatio_2____init_____8py} +\input{src_2opatio_2opat_2____init_____8py} +\input{build_2lib_2opatio_2opat_2opat_8py} +\input{src_2opatio_2opat_2opat_8py} +\input{readme_8md} %--- End generated contents --- % Index diff --git a/src/opatIO/public/opatIO.h b/src/opatIO/public/opatIO.h index 1da6ee9..62ffe0f 100644 --- a/src/opatIO/public/opatIO.h +++ b/src/opatIO/public/opatIO.h @@ -9,93 +9,264 @@ #include #include +/** + * @brief Structure to hold the header information of an OPAT file. + */ #pragma pack(1) struct Header { - char magic[4]; - uint16_t version; - uint32_t numTables; - uint32_t headerSize; - uint64_t indexOffset; - char creationDate[16]; - char sourceInfo[64]; - char comment[128]; - char reserved[26]; + char magic[4]; ///< Magic number to identify the file type + uint16_t version; ///< Version of the OPAT file format + uint32_t numTables; ///< Number of tables in the file + uint32_t headerSize; ///< Size of the header + uint64_t indexOffset; ///< Offset to the index section + char creationDate[16]; ///< Creation date of the file + char sourceInfo[64]; ///< Source information + char comment[128]; ///< Comment section + char reserved[26]; ///< Reserved for future use }; - #pragma pack() + +/** + * @brief Structure to hold the index information of a table in an OPAT file. + */ struct TableIndex { - double X; - double Z; - // double C; // For type 2 OPAL tables. When not set will be 0 - // double O; // For type 2 OPAL tables. When not set will be 0 - uint64_t byteStart; - uint64_t byteEnd; - char sha256[32]; + double X; ///< X composition value + double Z; ///< Z composition value + uint64_t byteStart; ///< Byte start position of the table + uint64_t byteEnd; ///< Byte end position of the table + char sha256[32]; ///< SHA-256 hash of the table data }; +/** + * @brief Structure to hold the data of an OPAT table. + */ struct OPATTable { - uint32_t N_R; - uint32_t N_T; - std::vector logR; - std::vector logT; - std::vector> logKappa; + uint32_t N_R; ///< Number of R values + uint32_t N_T; ///< Number of T values + std::vector logR; ///< Logarithm of R values + std::vector logT; ///< Logarithm of T values + std::vector> logKappa; ///< Logarithm of Kappa values }; class opatIOTest; // Friend for gtest +/** + * @brief Class to manage the input/output operations for OPAT files. + */ class OpatIO { private: - Header header; - std::vector tableIndex; - std::deque> tableQueue; - std::map> tableIDToComposition; - std::pair XZepsilon; - int maxQDepth = 10; - std::string filename; - bool loaded = false; + Header header; ///< Header information of the OPAT file + std::vector tableIndex; ///< Index information of the tables + std::deque> tableQueue; ///< Queue to manage table caching + std::map> tableIDToComposition; ///< Map to store table ID to composition mapping + std::pair XZepsilon; ///< Epsilon values for X and Z + int maxQDepth = 10; ///< Maximum depth of the table queue + std::string filename; ///< Filename of the OPAT file + bool loaded = false; ///< Flag to indicate if the file is loaded + /** + * @brief Read the header from the file. + * @param file The input file stream. + */ void readHeader(std::ifstream &file); + + /** + * @brief Read the table index from the file. + * @param file The input file stream. + */ void readTableIndex(std::ifstream &file); + /** + * @brief Get a table from the queue. + * @param tableID The ID of the table. + * @return The OPAT table. + */ OPATTable getTableFromQueue(int tableID); + + /** + * @brief Add a table to the queue. + * @param tableID The ID of the table. + * @param table The OPAT table. + */ void addTableToQueue(int tableID, OPATTable table); + + /** + * @brief Remove a table from the queue. + */ void removeTableFromQueue(); + + /** + * @brief Flush the table queue. + */ void flushQueue(); + /** + * @brief Get a table by its ID. + * @param tableID The ID of the table. + * @return The OPAT table. + */ OPATTable getTable(int tableID); + + /** + * @brief Print a table. + * @param table The OPAT table. + * @param truncateDigits Number of digits to truncate. + */ void printTable(OPATTable table, uint32_t truncateDigits=5); + /** + * @brief Lookup epsilon values for X and Z. + */ void XZLookupEpsilon(); + + /** + * @brief Build the table ID to composition mapping. + */ void buildTableIDToComposition(); public: + /** + * @brief Default constructor. + */ OpatIO(); + + /** + * @brief Constructor with filename. + * @param filename The name of the OPAT file. + */ OpatIO(std::string filename); + + /** + * @brief Destructor. + */ ~OpatIO(); + /** + * @brief Get a table by X and Z values. + * @param X The X composition value. + * @param Z The Z composition value. + * @return The OPAT table. + */ OPATTable getTable(double X, double Z); + + /** + * @brief Set the maximum depth of the table queue. + * @param depth The maximum depth. + */ void setMaxQDepth(int depth); + + /** + * @brief Get the maximum depth of the table queue. + * @return The maximum depth. + */ int getMaxQDepth(); + + /** + * @brief Set the filename of the OPAT file. + * @param filename The name of the file. + */ void setFilename(std::string filename); + + /** + * @brief Load the OPAT file. + */ void load(); + + /** + * @brief Unload the OPAT file. + */ void unload(); + + /** + * @brief Check if the file is loaded. + * @return True if the file is loaded, false otherwise. + */ bool isLoaded(); + /** + * @brief Print the header information. + */ void printHeader(); + + /** + * @brief Print the table index. + */ void printTableIndex(); + + /** + * @brief Print a table by X and Z values. + * @param X The X composition value. + * @param Z The Z composition value. + * @param truncateDigits Number of digits to truncate. + */ void printTable(double X, double Z, uint32_t truncateDigits=5); + /** + * @brief Get the table index. + * @return A vector of TableIndex structures. + */ std::vector getTableIndex(); + + /** + * @brief Get the header information. + * @return The Header structure. + */ Header getHeader(); + /** + * @brief Get the closest tables by X value. + * @param X The X composition value. + * @param ZExact The exact Z composition value. + * @param C The C composition value (default is 0). + * @param O The O composition value (default is 0). + * @param numTables The number of closest tables to retrieve (default is 1). + * @return A vector of OPAT tables. + */ std::vector getClosestXTables(double X, double ZExact, double C=0, double O=0, int numTables=1); - std::vector getClosestZTables(double XExact, double Z, double C=0, double O=0, int numTables=1); - std::vector getClosestTables(double X, double Z, double C=0, double O=0, int numTables=1); + /** + * @brief Get the closest tables by Z value. + * @param XExact The exact X composition value. + * @param Z The Z composition value. + * @param C The C composition value (default is 0). + * @param O The O composition value (default is 0). + * @param numTables The number of closest tables to retrieve (default is 1). + * @return A vector of OPAT tables. + */ + std::vector getClosestZTables(double XExact, double Z, double C=0, double O=0, int numTables=1); + + /** + * @brief Get the closest tables by X and Z values. + * @param X The X composition value. + * @param Z The Z composition value. + * @param C The C composition value (default is 0). + * @param O The O composition value (default is 0). + * @param numTables The number of closest tables to retrieve (default is 1). + * @return A vector of OPAT tables. + */ + std::vector getClosestTables(double X, double Z, double C=0, double O=0, int numTables=1); + + /** + * @brief Lookup the table ID by X and Z values. + * @param X The X composition value. + * @param Z The Z composition value. + * @return The table ID. + */ int lookupTableID(double X, double Z); + + /** + * @brief Lookup the closest table ID by X and Z values. + * @param X The X composition value. + * @param Z The Z composition value. + * @return The closest table ID. + */ int lookupClosestTableID(double X, double Z); + + /** + * @brief Get the version of the OPAT file format. + * @return The version of the OPAT file format. + */ uint16_t getOPATVersion(); }; - #endif \ No newline at end of file diff --git a/utils/opatio/src/opatio/opat/opat.py b/utils/opatio/src/opatio/opat/opat.py index 81abd61..741a761 100644 --- a/utils/opatio/src/opatio/opat/opat.py +++ b/utils/opatio/src/opatio/opat/opat.py @@ -13,31 +13,40 @@ import os @dataclass class Header: - magic: str - version: int - numTables: int - headerSize: int - indexOffset: int - creationDate: str - sourceInfo: str - comment: str - reserved: bytes + """ + @brief Structure to hold the header information of an OPAT file. + """ + magic: str #< Magic number to identify the file type + version: int #< Version of the OPAT file format + numTables: int #< Number of tables in the file + headerSize: int #< Size of the header + indexOffset: int #< Offset to the index section + creationDate: str #< Creation date of the file + sourceInfo: str #< Source information + comment: str #< Comment section + reserved: bytes #< Reserved for future use @dataclass class TableIndex: - X: float - Z: float - byteStart: int - byteEnd: int - sha256: bytes + """ + @brief Structure to hold the index information of a table in an OPAT file. + """ + X: float #< X composition value + Z: float #< Z composition value + byteStart: int #< Byte start position of the table + byteEnd: int #< Byte end position of the table + sha256: bytes #< SHA-256 hash of the table data @dataclass class OPATTable: - N_R: int - N_T: int - logR: Iterable[float] - logT: Iterable[float] - logKappa: Iterable[Iterable[float]] + """ + @brief Structure to hold the data of an OPAT table. + """ + N_R: int #< Number of R values + N_T: int #< Number of T values + logR: Iterable[float] #< Logarithm of R values + logT: Iterable[float] #< Logarithm of T values + logKappa: Iterable[Iterable[float]] #< Logarithm of Kappa values defaultHeader = Header( magic="OPAT", @@ -58,19 +67,31 @@ class OpatIO: @staticmethod def validate_char_array_size(s: str, nmax: int) -> bool: + """ + @brief Validate the size of a character array. + @param s The string to validate. + @param nmax The maximum allowed size. + @return True if the string size is valid, False otherwise. + """ if len(s) > nmax: return False return True @staticmethod def validate_logKappa(logKappa): + """ + @brief Validate the logKappa array. + @param logKappa The logKappa array to validate. + @throws ValueError if logKappa is not a non-empty 2D array. + @throws TypeError if logKappa is not a 2D array or iterable. + """ if isinstance(logKappa, np.ndarray): if logKappa.ndim == 2: return else: raise ValueError("logKappa must be a non-empty 2D array") - if isintance(logKappa, collectionIterable) and all(isinstance(row, collectionIterable) for row in logKappa): + if isinstance(logKappa, collectionIterable) and all(isinstance(row, collectionIterable) for row in logKappa): try: first_row = next(iter(logKappa)) if all(isinstance(x, (int, float)) for x in first_row): @@ -84,6 +105,13 @@ class OpatIO: @staticmethod def validate_1D(arr, name: str): + """ + @brief Validate a 1D array. + @param arr The array to validate. + @param name The name of the array. + @throws ValueError if the array is not 1D or not fully numeric. + @throws TypeError if the array is not a non-empty 1D array or iterable. + """ if isinstance(arr, np.ndarray): if arr.ndim == 1: return @@ -95,29 +123,60 @@ class OpatIO: else: raise ValueError(f"{name} must be fully numeric") else: - raise TypeError(f"{name} must be a non-empty 2D array or iterable") + raise TypeError(f"{name} must be a non-empty 1D array or iterable") @staticmethod def compute_checksum(data: bytes) -> bytes: + """ + @brief Compute the SHA-256 checksum of the given data. + @param data The data to compute the checksum for. + @return The SHA-256 checksum. + """ return hashlib.sha256(data).digest() def set_version(self, version: int) -> int: + """ + @brief Set the version of the OPAT file. + @param version The version to set. + @return The set version. + """ self.header.version = version return self.header.version def set_source(self, source: str) -> str: + """ + @brief Set the source information of the OPAT file. + @param source The source information to set. + @return The set source information. + @throws TypeError if the source string is too long. + """ if not self.validate_char_array_size(source, 64): raise TypeError(f"sourceInfo string ({source}) is too long ({len(source)}). Max length is 64") self.header.sourceInfo = source return self.header.sourceInfo def set_comment(self, comment: str) -> str: + """ + @brief Set the comment of the OPAT file. + @param comment The comment to set. + @return The set comment. + @throws TypeError if the comment string is too long. + """ if not self.validate_char_array_size(comment, 128): raise TypeError(f"comment string ({comment}) is too long ({len(comment)}). Max length is 128") self.header.comment = comment return self.header.comment def add_table(self, X: float, Z: float, logR: Iterable[float], logT: Iterable[float], logKappa: Iterable[Iterable[float]]): + """ + @brief Add a table to the OPAT file. + @param X The X composition value. + @param Z The Z composition value. + @param logR The logR values. + @param logT The logT values. + @param logKappa The logKappa values. + @throws ValueError if logKappa is not a non-empty 2D array or if logR and logT are not 1D arrays. + """ self.validate_logKappa(logKappa) self.validate_1D(logR, "logR") self.validate_1D(logT, "logT") @@ -142,6 +201,10 @@ class OpatIO: def _header_bytes(self) -> bytes: + """ + @brief Convert the header to bytes. + @return The header as bytes. + """ headerBytes = struct.pack( "<4s H I I Q 16s 64s 128s 26s", self.header.magic.encode('utf-8'), @@ -157,6 +220,11 @@ class OpatIO: return headerBytes def _table_bytes(self, table: OPATTable) -> Tuple[bytes, bytes]: + """ + @brief Convert a table to bytes. + @param table The OPAT table. + @return A tuple containing the checksum and the table as bytes. + """ logR = table.logR.flatten() logT = table.logT.flatten() logKappa = table.logKappa.flatten() @@ -172,6 +240,12 @@ class OpatIO: return (checksum, tableBytes) def _tableIndex_bytes(self, tableIndex: TableIndex) -> bytes: + """ + @brief Convert a table index to bytes. + @param tableIndex The table index. + @return The table index as bytes. + @throws RuntimeError if the table index entry does not have 64 bytes. + """ tableIndexBytes = struct.pack( ' str: + """ + @brief Get the string representation of the OpatIO object. + @return The string representation. + """ reprString = f"""OpatIO( - versoion: {self.header.version} + version: {self.header.version} numTables: {self.header.numTables} headerSize: {self.header.headerSize} indexOffset: {self.header.indexOffset} @@ -200,12 +278,19 @@ class OpatIO: return reprString def _format_table_as_string(self, table: OPATTable, X: float, Z: float) -> str: + """ + @brief Format a table as a string. + @param table The OPAT table. + @param X The X composition value. + @param Z The Z composition value. + @return The formatted table as a string. + """ tableString: List[str] = [] # fixed width X and Z header per table tableString.append(f"X: {X:<10.4f} Z: {Z:<10.4f}") tableString.append("-" * 80) - # write logR accross the top (reserving one col for where logT will be) - logRRow = f"{"":<10}" + # write logR across the top (reserving one col for where logT will be) + logRRow = f"{'':<10}" logRRowTrue = "".join(f"{r:<10.4f}" for r in table.logR) tableString.append(logRRow + logRRowTrue) for i, logT in enumerate(table.logT): @@ -218,6 +303,11 @@ class OpatIO: @staticmethod def print_table_indexes(table_indexes: List[TableIndex]) -> str: + """ + @brief Print the table indexes. + @param table_indexes The list of table indexes. + @return The formatted table indexes as a string. + """ if not table_indexes: print("No table indexes found.") return @@ -231,6 +321,11 @@ class OpatIO: return '\n'.join(tableRows) def save_as_ascii(self, filename: str) -> str: + """ + @brief Save the OPAT file as an ASCII file. + @param filename The name of the file. + @return The name of the saved file. + """ numericFMT = "{:.18e}" currentStartByte: int = 256 tableIndexs: List[bytes] = [] @@ -268,6 +363,12 @@ class OpatIO: f.write(self.print_table_indexes(tableIndexs)) def save(self, filename: str) -> str: + """ + @brief Save the OPAT file as a binary file. + @param filename The name of the file. + @return The name of the saved file. + @throws RuntimeError if the header does not have 256 bytes. + """ tempHeaderBytes = self._header_bytes() if len(tempHeaderBytes) != 256: @@ -305,6 +406,12 @@ class OpatIO: def loadOpat(filename: str) -> OpatIO: + """ + @brief Load an OPAT file. + @param filename The name of the file. + @return The loaded OpatIO object. + @throws RuntimeError if the header does not have 256 bytes. + """ opat = OpatIO() with open(filename, 'rb') as f: headerBytes: bytes = f.read(256) @@ -355,4 +462,3 @@ def loadOpat(filename: str) -> OpatIO: opat.add_table(tableIndex.X, tableIndex.Z, logR, logT, logKappa) return opat - \ No newline at end of file