build(hypre): added hypre and mpi as dependencies
hypre is required for parallel MFEM usage and hypre requires MPI. Both of these have been added as dependecies. MPI is added as a dependency in the same manner as boost (i.e. with an install script which checks for system installation and provides a way that the user can initiate a system installation). The MPI install script has been incorporated with the mk script. Hypre has been added as a subproject.
This commit is contained in:
2
build-config/hypre/meson.build
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2
build-config/hypre/meson.build
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hypre_sp = cmake.subproject('hypre')
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hypre_dep = hypre_sp.dependency('HYPRE')
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@@ -6,6 +6,8 @@ subdir('quill')
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subdir('boost')
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subdir('opatIO')
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subdir('pybind')
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subdir('mpi')
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subdir('hypre')
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# Set the config file error handling options
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configErr = get_option('config_error_handling')
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0
build-config/mpi/.mpi_installed
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0
build-config/mpi/.mpi_installed
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272
build-config/mpi/install.sh
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272
build-config/mpi/install.sh
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#!/usr/bin/env bash
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#
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# install_mpi.sh - Interactive installation script for MPI.
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#
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# This script checks if MPI is installed (by trying to compile a simple MPI program).
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# If not found, it prompts the user to install MPI using the native package manager for:
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# - FreeBSD, Ubuntu, Debian, Fedora, Arch, Mint, Manjaro, macOS, OpenSuse, and NixOS.
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#
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# All output is colorized for clarity and logged to mpi-install-log.txt.
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set -e
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# ANSI color codes.
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RED="\033[0;31m"
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GREEN="\033[0;32m"
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YELLOW="\033[0;33m"
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BLUE="\033[0;34m"
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NC="\033[0m" # No Color
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# Log file.
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LOGFILE="mpi-install-log.txt"
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touch "$LOGFILE" # Ensure log file exists
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# Log function: prints to stdout and appends to logfile.
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log() {
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local message="$1"
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# Print the colored message to stdout.
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echo -e "$message"
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# Strip ANSI escape sequences and append the cleaned message to the log file.
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echo -e "$message" | sed -r 's/\x1B\[[0-9;]*[mK]//g' >> "$LOGFILE"
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}
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# Function to check if MPI (specifically mpicc and a compilable environment) is installed.
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check_mpi_installed() {
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log "${BLUE}[Info] Checking for MPI (e.g., Open MPI, MPICH) using mpicc...${NC}"
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local tmpDir="mpiTest" # Define tmpDir locally
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# Clean up any previous test directory
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if [[ -d "$tmpDir" ]]; then
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rm -rf "$tmpDir"
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fi
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mkdir "$tmpDir"
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local sourceFile="$tmpDir/test_mpi.c"
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local outputFile="$tmpDir/test_mpi_app"
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# Write a minimal MPI C program
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cat > "$sourceFile" <<EOF
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#include <mpi.h>
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#include <stdio.h>
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int main(int argc, char** argv) {
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if (MPI_Init(NULL, NULL) != MPI_SUCCESS) {
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// Using fprintf for stderr in case stdout is redirected by build tools
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fprintf(stderr, "MPI_Init failed\n");
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return 1;
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}
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int world_size;
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if (MPI_Comm_size(MPI_COMM_WORLD, &world_size) != MPI_SUCCESS) {
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fprintf(stderr, "MPI_Comm_size failed\n");
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MPI_Finalize(); // Attempt to finalize even if a step fails
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return 1;
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}
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int world_rank;
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if (MPI_Comm_rank(MPI_COMM_WORLD, &world_rank) != MPI_SUCCESS) {
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fprintf(stderr, "MPI_Comm_rank failed\n");
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MPI_Finalize();
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return 1;
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}
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// A simple printf to ensure it links and runs, though not strictly necessary for the check
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// printf("MPI Initialized successfully on rank %d of %d\\n", world_rank, world_size);
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if (MPI_Finalize() != MPI_SUCCESS) {
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fprintf(stderr, "MPI_Finalize failed\n");
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return 1;
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}
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return 0;
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}
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EOF
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# Try to find mpicc and compile the test program
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if command -v mpicc &> /dev/null; then
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# Log the compilation command
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log "${BLUE}[Info] Attempting to compile MPI test program with: mpicc \"$sourceFile\" -o \"$outputFile\"${NC}"
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# Attempt compilation, redirecting stdout and stderr of mpicc to the log file for details
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if mpicc "$sourceFile" -o "$outputFile" >> "$LOGFILE" 2>&1; then
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log "${GREEN}[Success] MPI compiler (mpicc) found and test program compiled successfully.${NC}"
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# Optional: Could add a mpiexec -n 1 "$outputFile" check here for further validation
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rm -rf "$tmpDir"
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return 0 # MPI seems to be installed and working
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else
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log "${RED}[Error] MPI compiler (mpicc) found, but failed to compile the test program. See $LOGFILE for details.${NC}"
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fi
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else
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log "${RED}[Error] MPI compiler (mpicc) not found in PATH.${NC}"
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fi
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# Cleanup and return failure
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rm -rf "$tmpDir"
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return 1
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}
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# Prompt the user for a yes/no answer.
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prompt_yes_no() {
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local promptMsg="$1"
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while true; do
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read -r -p "$(echo -e "${YELLOW}$promptMsg${NC} (y/n): ")" answer
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case "$answer" in
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[Yy]* ) return 0;;
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[Nn]* ) return 1;;
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* ) echo -e "${RED}Please answer yes (y) or no (n).${NC}";;
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esac
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done
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}
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# Detect OS and Distribution.
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OS=$(uname -s)
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DISTRO="unknown"
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if [ -f /etc/os-release ]; then
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# shellcheck disable=SC1091
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. /etc/os-release
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DISTRO=$ID
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elif [ -f /etc/lsb-release ]; then # Fallback for older systems
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# shellcheck disable=SC1091
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. /etc/lsb-release
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DISTRO=$DISTRIB_ID
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fi
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# Normalize some distro names
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DISTRO=$(echo "$DISTRO" | tr '[:upper:]' '[:lower:]')
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if [[ "$OS" == "Darwin" ]]; then
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OS="macOS"
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fi
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if [[ $OS == "macOS" ]]; then
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log "${BLUE}[Info] Detected OS: ${OS}${NC}"
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else
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log "${BLUE}[Info] Detected OS: ${OS} Distribution: ${DISTRO}${NC}"
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fi
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# Main script logic
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log "${BLUE}[Info] Starting MPI installation check...${NC}"
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if check_mpi_installed; then
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log "${GREEN}[Success] MPI appears to be already installed and configured on your system.${NC}"
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log "${GREEN}[Success] Your MPI-dependent application can now proceed.${NC}"
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exit 0
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else
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log "${YELLOW}[Warning] MPI was not detected or is not properly configured on your system.${NC}"
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if prompt_yes_no "[Query] Would you like this script to attempt to install MPI (Open MPI) now?"; then
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log "${BLUE}[Info] Attempting to install MPI...${NC}"
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case "$OS" in
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"macOS")
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if ! command -v brew &> /dev/null; then
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log "${YELLOW}[Warning] Homebrew is not installed. It is highly recommended for installing MPI on macOS.${NC}"
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if prompt_yes_no "[Query] Would you like to install Homebrew now?"; then
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log "${BLUE}[Info] Installing Homebrew...${NC}"
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# Piping to tee to ensure output is captured in the log file
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/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)" 2>&1 | tee -a "$LOGFILE"
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else
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log "${RED}[Error] Homebrew is required for an easy MPI installation on macOS using this script. Aborting.${NC}"
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exit 1
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fi
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fi
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log "${BLUE}[Info] Running: brew install open-mpi${NC}"
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brew install open-mpi 2>&1 | tee -a "$LOGFILE"
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;;
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"Linux")
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case "$DISTRO" in
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"ubuntu"|"debian"|"linuxmint"|"pop"|"raspbian") # Added pop and raspbian
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log "${BLUE}[Info] Running: sudo apt-get update && sudo apt-get install -y libopenmpi-dev${NC}"
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sudo apt-get update 2>&1 | tee -a "$LOGFILE"
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sudo apt-get install -y libopenmpi-dev 2>&1 | tee -a "$LOGFILE"
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;;
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"fedora"|"centos"|"rhel") # Added centos and rhel (dnf is common now)
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if command -v dnf &> /dev/null; then
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log "${BLUE}[Info] Running: sudo dnf install -y openmpi-devel${NC}"
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sudo dnf install -y openmpi-devel 2>&1 | tee -a "$LOGFILE"
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elif command -v yum &> /dev/null; then # Fallback for older CentOS/RHEL
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log "${BLUE}[Info] Running: sudo yum install -y openmpi-devel${NC}"
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sudo yum install -y openmpi-devel 2>&1 | tee -a "$LOGFILE"
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else
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log "${RED}[Error] Neither dnf nor yum found. Cannot install MPI on this Fedora/RHEL-like system automatically.${NC}"
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exit 1
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fi
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;;
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"arch"|"manjaro"|"endeavouros") # Added endeavouros
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log "${BLUE}[Info] Running: sudo pacman -S --noconfirm openmpi${NC}"
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sudo pacman -S --noconfirm openmpi 2>&1 | tee -a "$LOGFILE"
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;;
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"opensuse"|"opensuse-leap"|"opensuse-tumbleweed") # More specific opensuse IDs
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log "${BLUE}[Info] Running: sudo zypper install -y openmpi-devel${NC}" # Or openmpi4-devel, openmpi-devel is often a meta package
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sudo zypper install -y openmpi-devel 2>&1 | tee -a "$LOGFILE"
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;;
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"nixos")
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log "${BLUE}[Info] On NixOS, you typically manage packages declaratively or with nix-shell.${NC}"
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log "${BLUE}[Info] To install Open MPI imperatively: nix-env -iA nixpkgs.openmpi${NC}"
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log "${YELLOW}[Warning] This script will not run nix-env automatically. Please install manually if desired.${NC}"
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log "${YELLOW}[Info] For declarative environment, add 'openmpi' to your configuration.nix or shell.nix.${NC}"
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# nix-env -iA nixpkgs.openmpi 2>&1 | tee -a "$LOGFILE" # Decided against auto-running this for NixOS
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;;
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*)
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log "${RED}[Error] Your Linux distribution ($DISTRO) is not recognized or not explicitly supported for automatic MPI installation by this script.${NC}"
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log "${RED}[Info] Please try installing Open MPI or another MPI implementation manually.${NC}"
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exit 1
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;;
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esac
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;;
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"FreeBSD")
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log "${BLUE}[Info] Running: sudo pkg install openmpi${NC}"
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sudo pkg install -y openmpi 2>&1 | tee -a "$LOGFILE"
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;;
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*)
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log "${RED}[Error] Automatic MPI installation is not supported on OS: ${OS} by this script.${NC}"
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log "${RED}[Info] Please try installing Open MPI or another MPI implementation manually.${NC}"
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exit 1
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;;
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esac
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# Verify MPI installation after attempting to install
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log "${BLUE}[Info] Verifying MPI installation attempt...${NC}"
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if check_mpi_installed; then
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log "${GREEN}[Success] MPI installation appears to have succeeded.${NC}"
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else
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log "${RED}[Error] MPI installation appears to have failed or is still not correctly configured. Please check $LOGFILE and install MPI manually.${NC}"
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exit 1
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fi
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else
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log "${YELLOW}[Info] User chose not to install MPI automatically.${NC}"
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log "${RED}[Error] MPI is required for the application to proceed.${NC}"
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log "${YELLOW}Please install an MPI implementation (e.g., Open MPI, MPICH) manually using the appropriate command for your system:${NC}"
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case "$OS" in
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"macOS")
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log "${YELLOW} Example: brew install open-mpi (Install Homebrew from https://brew.sh if not present)${NC}"
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;;
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"Linux")
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case "$DISTRO" in
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"ubuntu"|"debian"|"linuxmint"|"pop"|"raspbian")
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log "${YELLOW} Example: sudo apt-get install libopenmpi-dev${NC}"
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;;
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"fedora"|"centos"|"rhel")
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log "${YELLOW} Example: sudo dnf install openmpi-devel (or sudo yum install openmpi-devel)${NC}"
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;;
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"arch"|"manjaro"|"endeavouros")
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log "${YELLOW} Example: sudo pacman -S openmpi${NC}"
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;;
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"opensuse"|"opensuse-leap"|"opensuse-tumbleweed")
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log "${YELLOW} Example: sudo zypper install openmpi-devel${NC}"
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;;
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"nixos")
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log "${YELLOW} Example: nix-env -iA nixpkgs.openmpi or add to configuration.nix${NC}"
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;;
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*)
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log "${YELLOW} Please consult your distribution's documentation for installing an MPI development package (e.g., Open MPI, MPICH).${NC}"
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;;
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esac
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;;
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"FreeBSD")
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log "${YELLOW} Example: sudo pkg install openmpi${NC}"
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;;
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*)
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log "${YELLOW} Please consult your operating system's documentation for installing an MPI development package.${NC}"
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;;
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esac
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exit 1
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fi
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fi
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log "${GREEN}[SUCCESS] MPI is installed and ready for use!${NC}"
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log "${GREEN}[SUCCESS] 4DSSE installation can now proceed.${NC}"
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exit 0
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@@ -0,0 +1 @@
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mpi_dep = dependency('mpi', version: '>=5.0.0', language: 'cpp')
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Reference in New Issue
Block a user