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refactor(serif): refactored entire codebase into serif and sub namespaces

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This commit is contained in:
Emily Boudreaux
2025-06-11 14:49:11 -04:00
parent f0e1840c91
commit 6e4ff1ece9
56 changed files with 747 additions and 2041 deletions
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12
src/network/private/approx8.cpp
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@@ -72,7 +72,7 @@ The coefficients to the fit are from reaclib.jinaweb.org .
*/
namespace nnApprox8{
namespace serif::network::approx8{
// using namespace std;
using namespace boost::numeric::odeint;
@@ -245,7 +245,7 @@ namespace nnApprox8{
// a Jacobian matrix for implicit solvers
void Jacobian::operator() ( const vector_type &y, matrix_type &J, double /* t */, vector_type &dfdt ) {
Constants& constants = Constants::getInstance();
serif::constant::Constants& constants = serif::constant::Constants::getInstance();
const double avo = constants.get("N_a").value;
const double clight = constants.get("c").value;
// EOS
@@ -350,7 +350,7 @@ namespace nnApprox8{
}
void ODE::operator() ( const vector_type &y, vector_type &dydt, double /* t */) {
Constants& constants = Constants::getInstance();
serif::constant::Constants& constants = serif::constant::Constants::getInstance();
const double avo = constants.get("N_a").value;
const double clight = constants.get("c").value;
@@ -444,7 +444,7 @@ namespace nnApprox8{
dydt[Net::iener] = -enuc*avo*clight*clight;
}
nuclearNetwork::NetOut Approx8Network::evaluate(const nuclearNetwork::NetIn &netIn) {
NetOut Approx8Network::evaluate(const NetIn &netIn) {
m_y = convert_netIn(netIn);
m_tmax = netIn.tmax;
m_dt0 = netIn.dt0;
@@ -488,7 +488,7 @@ namespace nnApprox8{
m_y[i] /= ysum;
}
nuclearNetwork::NetOut netOut;
NetOut netOut;
std::vector<double> outComposition;
outComposition.reserve(Net::nvar);
@@ -506,7 +506,7 @@ namespace nnApprox8{
m_stiff = stiff;
}
vector_type Approx8Network::convert_netIn(const nuclearNetwork::NetIn &netIn) {
vector_type Approx8Network::convert_netIn(const NetIn &netIn) {
if (netIn.composition.size() != Net::niso) {
LOG_ERROR(m_logger, "Error: composition size mismatch in convert_netIn");
throw std::runtime_error("Error: composition size mismatch in convert_netIn");