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docs(opatIO): wrote and built doxygen docs

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Emily Boudreaux
2025-02-16 12:29:51 -05:00
parent 5ce365d545
commit 0d5406aeee
44 changed files with 711 additions and 243 deletions
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16
docs/html/annotated.html
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@@ -98,16 +98,20 @@ $(document).ready(function(){initNavTree('annotated.html',''); initResizable();
<div class="contents">
<div class="textblock">Here are the classes, structs, unions and interfaces with brief descriptions:</div><div class="directory">
<table class="directory">
<tr id="row_0_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classCell.html" target="_self">Cell</a></td><td class="desc"></td></tr>
<tr id="row_1_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structconstant.html" target="_self">constant</a></td><td class="desc">Structure to hold a constant's details </td></tr>
<tr id="row_2_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classconstants.html" target="_self">constants</a></td><td class="desc">Class to manage a collection of constants </td></tr>
<tr id="row_3_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classconstTest.html" target="_self">constTest</a></td><td class="desc">Test suite for the const class </td></tr>
<tr id="row_4_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classDObject.html" target="_self">DObject</a></td><td class="desc">A universal data container class </td></tr>
<tr id="row_5_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classDObjectTest.html" target="_self">DObjectTest</a></td><td class="desc">Test suite for the <a class="el" href="classDObject.html" title="A universal data container class.">DObject</a> class </td></tr>
<tr id="row_0_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structConstant.html" target="_self">Constant</a></td><td class="desc">Structure to hold a constant's details </td></tr>
<tr id="row_1_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classConstants.html" target="_self">Constants</a></td><td class="desc">Class to manage a collection of constants </td></tr>
<tr id="row_2_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classconstTest.html" target="_self">constTest</a></td><td class="desc">Test suite for the const class </td></tr>
<tr id="row_3_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classDObject.html" target="_self">DObject</a></td><td class="desc">A universal data container class </td></tr>
<tr id="row_4_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classDObjectTest.html" target="_self">DObjectTest</a></td><td class="desc">Test suite for the <a class="el" href="classDObject.html" title="A universal data container class.">DObject</a> class </td></tr>
<tr id="row_5_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structHeader.html" target="_self">Header</a></td><td class="desc">Structure to hold the header information of an OPAT file </td></tr>
<tr id="row_6_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classLockableDObject.html" target="_self">LockableDObject</a></td><td class="desc">Wrapper for <a class="el" href="classDObject.html" title="A universal data container class.">DObject</a> with thread-safe access </td></tr>
<tr id="row_7_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classLockableDObjectTest.html" target="_self">LockableDObjectTest</a></td><td class="desc">Test suite for the <a class="el" href="classLockableDObject.html" title="Wrapper for DObject with thread-safe access.">LockableDObject</a> class </td></tr>
<tr id="row_8_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classMetadata.html" target="_self">Metadata</a></td><td class="desc">Represents metadata information for data objects in the dobj module </td></tr>
<tr id="row_9_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classMetadataTest.html" target="_self">MetadataTest</a></td><td class="desc">Test suite for the <a class="el" href="classMetadata.html" title="Represents metadata information for data objects in the dobj module.">Metadata</a> class </td></tr>
<tr id="row_10_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classOpatIO.html" target="_self">OpatIO</a></td><td class="desc">Class to manage the input/output operations for OPAT files </td></tr>
<tr id="row_11_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classopatIOTest.html" target="_self">opatIOTest</a></td><td class="desc">Test suite for the const class </td></tr>
<tr id="row_12_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structOPATTable.html" target="_self">OPATTable</a></td><td class="desc">Structure to hold the data of an OPAT table </td></tr>
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</table>
</div><!-- directory -->
</div><!-- contents -->

12
docs/html/annotated_dup.js
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@@ -1,13 +1,17 @@
var annotated_dup =
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[ "constant", "structconstant.html", "structconstant" ],
[ "constants", "classconstants.html", "classconstants" ],
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[ "constTest", "classconstTest.html", "classconstTest" ],
[ "DObject", "classDObject.html", "classDObject" ],
[ "DObjectTest", "classDObjectTest.html", "classDObjectTest" ],
[ "Header", "structHeader.html", "structHeader" ],
[ "LockableDObject", "classLockableDObject.html", "classLockableDObject" ],
[ "LockableDObjectTest", "classLockableDObjectTest.html", "classLockableDObjectTest" ],
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[ "MetadataTest", "classMetadataTest.html", "classMetadataTest" ]
[ "MetadataTest", "classMetadataTest.html", "classMetadataTest" ],
[ "OpatIO", "classOpatIO.html", "classOpatIO" ],
[ "opatIOTest", "classopatIOTest.html", null ],
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[ "TableIndex", "structTableIndex.html", "structTableIndex" ]
];

15
docs/html/classes.html
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@@ -96,20 +96,29 @@ $(document).ready(function(){initNavTree('classes.html',''); initResizable(); })
<div class="title">Class Index</div> </div>
</div><!--header-->
<div class="contents">
<div class="qindex"><a class="qindex" href="#letter_C">C</a>&#160;|&#160;<a class="qindex" href="#letter_D">D</a>&#160;|&#160;<a class="qindex" href="#letter_L">L</a>&#160;|&#160;<a class="qindex" href="#letter_M">M</a></div>
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<div class="classindex">
<dl class="classindex even">
<dt class="alphachar"><a name="letter_C">C</a></dt>
<dd><a class="el" href="classCell.html">Cell</a></dd><dd><a class="el" href="structconstant.html">constant</a></dd><dd><a class="el" href="classconstants.html">constants</a></dd><dd><a class="el" href="classconstTest.html">constTest</a></dd></dl>
<dd><a class="el" href="structConstant.html">Constant</a></dd><dd><a class="el" href="classConstants.html">Constants</a></dd><dd><a class="el" href="classconstTest.html">constTest</a></dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a name="letter_D">D</a></dt>
<dd><a class="el" href="classDObject.html">DObject</a></dd><dd><a class="el" href="classDObjectTest.html">DObjectTest</a></dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a name="letter_H">H</a></dt>
<dd><a class="el" href="structHeader.html">Header</a></dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a name="letter_L">L</a></dt>
<dd><a class="el" href="classLockableDObject.html">LockableDObject</a></dd><dd><a class="el" href="classLockableDObjectTest.html">LockableDObjectTest</a></dd></dl>
<dl class="classindex odd">
<dl class="classindex even">
<dt class="alphachar"><a name="letter_M">M</a></dt>
<dd><a class="el" href="classMetadata.html">Metadata</a></dd><dd><a class="el" href="classMetadataTest.html">MetadataTest</a></dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a name="letter_O">O</a></dt>
<dd><a class="el" href="classOpatIO.html">OpatIO</a></dd><dd><a class="el" href="classopatIOTest.html">opatIOTest</a></dd><dd><a class="el" href="structOPATTable.html">OPATTable</a></dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a name="letter_T">T</a></dt>
<dd><a class="el" href="structTableIndex.html">TableIndex</a></dd></dl>
</div>
</div><!-- contents -->
</div><!-- doc-content -->

5
docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.js
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@@ -2,7 +2,6 @@ var dir_68267d1309a1af8e8297ef4c3efbcdba =
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[ "const", "dir_409882efad9ab48a895cd8b217d1e026.html", "dir_409882efad9ab48a895cd8b217d1e026" ],
[ "dobj", "dir_768194193337d64eaa7edd2c5f5038a4.html", "dir_768194193337d64eaa7edd2c5f5038a4" ],
[ "mapping", "dir_5300298560c4bf255ab9f36681603d89.html", "dir_5300298560c4bf255ab9f36681603d89" ],
[ "mesh", "dir_7be0d8c199b9408ae01f5d77515b8def.html", "dir_7be0d8c199b9408ae01f5d77515b8def" ],
[ "opac", "dir_98811334950283dfb0b975440d5272eb.html", "dir_98811334950283dfb0b975440d5272eb" ]
[ "opac", "dir_98811334950283dfb0b975440d5272eb.html", "dir_98811334950283dfb0b975440d5272eb" ],
[ "opatIO", "dir_dc4574cef47f5b50114efcdd6e195baf.html", "dir_dc4574cef47f5b50114efcdd6e195baf" ]
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docs/html/files.html
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@@ -110,16 +110,12 @@ $(document).ready(function(){initNavTree('files.html',''); initResizable(); });
<tr id="row_0_1_1_0_"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><a href="DObject_8h_source.html"><span class="icondoc"></span></a><a class="el" href="DObject_8h.html" target="_self">DObject.h</a></td><td class="desc">Defines the <a class="el" href="classDObject.html" title="A universal data container class.">DObject</a> class, a universal data container for the project </td></tr>
<tr id="row_0_1_1_1_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><a href="LockableDObject_8h_source.html"><span class="icondoc"></span></a><a class="el" href="LockableDObject_8h.html" target="_self">LockableDObject.h</a></td><td class="desc">A lightweight wrapper for <a class="el" href="classDObject.html" title="A universal data container class.">DObject</a> that adds locking capabilities </td></tr>
<tr id="row_0_1_1_2_"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><a href="Metadata_8h_source.html"><span class="icondoc"></span></a><a class="el" href="Metadata_8h.html" target="_self">Metadata.h</a></td><td class="desc">Public interface for the <a class="el" href="classMetadata.html" title="Represents metadata information for data objects in the dobj module.">Metadata</a> class used in the dobj module </td></tr>
<tr id="row_0_2_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_2_" class="arrow" onclick="toggleFolder('0_2_')">&#9660;</span><span id="img_0_2_" class="iconfopen" onclick="toggleFolder('0_2_')">&#160;</span><a class="el" href="dir_5300298560c4bf255ab9f36681603d89.html" target="_self">mapping</a></td><td class="desc"></td></tr>
<tr id="row_0_2_0_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_2_0_" class="arrow" onclick="toggleFolder('0_2_0_')">&#9660;</span><span id="img_0_2_0_" class="iconfopen" onclick="toggleFolder('0_2_0_')">&#160;</span><a class="el" href="dir_01375c4291ef81af6b426b22dfef59b0.html" target="_self">private</a></td><td class="desc"></td></tr>
<tr id="row_0_2_0_0_" class="even"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><a href="grid_8h_source.html"><span class="icondoc"></span></a><b>grid.h</b></td><td class="desc"></td></tr>
<tr id="row_0_2_0_1_"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><a href="mapper_8h_source.html"><span class="icondoc"></span></a><b>mapper.h</b></td><td class="desc"></td></tr>
<tr id="row_0_3_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_3_" class="arrow" onclick="toggleFolder('0_3_')">&#9660;</span><span id="img_0_3_" class="iconfopen" onclick="toggleFolder('0_3_')">&#160;</span><a class="el" href="dir_7be0d8c199b9408ae01f5d77515b8def.html" target="_self">mesh</a></td><td class="desc"></td></tr>
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<tr id="row_0_2_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_2_" class="arrow" onclick="toggleFolder('0_2_')">&#9660;</span><span id="img_0_2_" class="iconfopen" onclick="toggleFolder('0_2_')">&#160;</span><a class="el" href="dir_98811334950283dfb0b975440d5272eb.html" target="_self">opac</a></td><td class="desc"></td></tr>
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@@ -127,6 +123,8 @@ $(document).ready(function(){initNavTree('files.html',''); initResizable(); });
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<tr id="row_1_2_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_1_2_" class="arrow" onclick="toggleFolder('1_2_')">&#9660;</span><span id="img_1_2_" class="iconfopen" onclick="toggleFolder('1_2_')">&#160;</span><a class="el" href="dir_a0668aa070a38eaa8236727e19a9b15f.html" target="_self">opatIO</a></td><td class="desc"></td></tr>
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</table>
</div><!-- directory -->
</div><!-- contents -->

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@@ -94,9 +94,25 @@ $(document).ready(function(){initNavTree('functions.html',''); initResizable();
<div class="contents">
<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
<h3><a id="index_b"></a>- b -</h3><ul>
<li>byteEnd
: <a class="el" href="structTableIndex.html#a69c87fd1cb0b7a64a82c52c54193e5e6">TableIndex</a>
</li>
<li>byteStart
: <a class="el" href="structTableIndex.html#ad899cf13056eb17b33e1c5e303e10132">TableIndex</a>
</li>
</ul>
<h3><a id="index_c"></a>- c -</h3><ul>
<li>constants()
: <a class="el" href="classconstants.html#a9be0748cd713f4a465b548e0c44458ee">constants</a>
<li>comment
: <a class="el" href="structHeader.html#a122331824871070af2c6cebc9698abd8">Header</a>
</li>
<li>Constant()
: <a class="el" href="structConstant.html#a84ca5b6951cc8a8eccd083894302a857">Constant</a>
</li>
<li>creationDate
: <a class="el" href="structHeader.html#a83f52dffac0449704ef1a50a5e787e92">Header</a>
</li>
</ul>
@@ -113,12 +129,21 @@ $(document).ready(function(){initNavTree('functions.html',''); initResizable();
<h3><a id="index_g"></a>- g -</h3><ul>
<li>get()
: <a class="el" href="classconstants.html#a00666cb3d413cc53e4a3e629c2e22155">constants</a>
: <a class="el" href="classConstants.html#a36ddd7fe6857d1bbf6d1c84d4ed7bc19">Constants</a>
, <a class="el" href="classLockableDObject.html#adcfe201fc728cc1c6fcf638a566ba9a1">LockableDObject</a>
</li>
<li>getByteSize()
: <a class="el" href="classMetadata.html#ac7980d1efdd6ae434f0115f83d08348e">Metadata</a>
</li>
<li>getClosestTables()
: <a class="el" href="classOpatIO.html#a939e4edec4053517463f848648db770d">OpatIO</a>
</li>
<li>getClosestXTables()
: <a class="el" href="classOpatIO.html#a83acf4fe2aec4e588453b5a39a4def1a">OpatIO</a>
</li>
<li>getClosestZTables()
: <a class="el" href="classOpatIO.html#a9d9600e7af036deeada78da9afd4b65b">OpatIO</a>
</li>
<li>getData()
: <a class="el" href="classDObject.html#a4862655c3634d019b0a45b811d6f7235">DObject</a>
</li>
@@ -134,22 +159,40 @@ $(document).ready(function(){initNavTree('functions.html',''); initResizable();
<li>getErrorCode()
: <a class="el" href="classDObject.html#afa8926d916081de72478cb8813c25e98">DObject</a>
</li>
<li>getHeader()
: <a class="el" href="classOpatIO.html#afe725b647bc5bb802f6d711fc5dca3ab">OpatIO</a>
</li>
<li>getInstance()
: <a class="el" href="classConstants.html#aaa6f3af20fa563cf22df71a987923065">Constants</a>
</li>
<li>getMaxQDepth()
: <a class="el" href="classOpatIO.html#a48cd5e4f3fdb221bc1b6253e149e8e01">OpatIO</a>
</li>
<li>getOPATVersion()
: <a class="el" href="classOpatIO.html#a2894437c09f4cdb06c9b06d6aad4bd2f">OpatIO</a>
</li>
<li>getTable()
: <a class="el" href="classOpatIO.html#a0817f135f44e3bdc610d30df145f118d">OpatIO</a>
</li>
<li>getTableIndex()
: <a class="el" href="classOpatIO.html#af0bc6bb210c4ff74bc1e043aeb252e1a">OpatIO</a>
</li>
</ul>
<h3><a id="index_h"></a>- h -</h3><ul>
<li>has()
: <a class="el" href="classconstants.html#a35dcd5bb493bc095330b177819242c93">constants</a>
: <a class="el" href="classConstants.html#a2aa041fd223f259e55bf098c90581039">Constants</a>
</li>
<li>headerSize
: <a class="el" href="structHeader.html#af0bdf31defd5888cc8d2f7537e687917">Header</a>
</li>
</ul>
<h3><a id="index_i"></a>- i -</h3><ul>
<li>initialize()
: <a class="el" href="classconstants.html#ab08623c9c865188806b6820d3ed27fe9">constants</a>
</li>
<li>is_loaded()
: <a class="el" href="classconstants.html#ab72bcb21759e2e7f26f55f1d3454b999">constants</a>
<li>indexOffset
: <a class="el" href="structHeader.html#a31039c09176a479defcbe38597eb9957">Header</a>
</li>
<li>isDebugEnabled()
: <a class="el" href="classMetadata.html#abe52c81e04665628666b4140cd346b69">Metadata</a>
@@ -157,27 +200,52 @@ $(document).ready(function(){initNavTree('functions.html',''); initResizable();
<li>isDebuggingEnabled()
: <a class="el" href="classDObject.html#ae47bf220fbe2173cf6933c2380035dbd">DObject</a>
</li>
<li>isLoaded()
: <a class="el" href="classConstants.html#ae276dfdc0ffe75a53e3842e33ab52630">Constants</a>
, <a class="el" href="classOpatIO.html#aba1be05d51d4b0b9e4581b95ad0e1890">OpatIO</a>
</li>
</ul>
<h3><a id="index_k"></a>- k -</h3><ul>
<li>keys()
: <a class="el" href="classconstants.html#a310c5d599cf21de82eaf0abe9bc5f9a0">constants</a>
: <a class="el" href="classConstants.html#ab9de36fa145552a3e7964e7e85a67149">Constants</a>
</li>
</ul>
<h3><a id="index_l"></a>- l -</h3><ul>
<li>load()
: <a class="el" href="classOpatIO.html#a3578ac9bad40dd45ada3459f92a93b56">OpatIO</a>
</li>
<li>lock()
: <a class="el" href="classLockableDObject.html#ade38ca54703913359fc3b4366f6e292a">LockableDObject</a>
</li>
<li>LockableDObject()
: <a class="el" href="classLockableDObject.html#ae1a174a2740fa053626fe2820ee0efee">LockableDObject</a>
</li>
<li>logKappa
: <a class="el" href="structOPATTable.html#aee4e3713cffa0ed0a5bd79e2dec97d6e">OPATTable</a>
</li>
<li>logR
: <a class="el" href="structOPATTable.html#afaf11794675d27e75de5233b947fced9">OPATTable</a>
</li>
<li>logT
: <a class="el" href="structOPATTable.html#a237ed50cee8df2144a2c47b5ffa443d3">OPATTable</a>
</li>
<li>lookupClosestTableID()
: <a class="el" href="classOpatIO.html#af870ebd76bef969fa1f7c8270ac25cd8">OpatIO</a>
</li>
<li>lookupTableID()
: <a class="el" href="classOpatIO.html#a37959ed6845e09302bb8c206e3e006e4">OpatIO</a>
</li>
</ul>
<h3><a id="index_m"></a>- m -</h3><ul>
<li>magic
: <a class="el" href="structHeader.html#a87c9fc5b27c41fe65698f8538c23b182">Header</a>
</li>
<li>Metadata()
: <a class="el" href="classMetadata.html#ae849560667461008cb72e83919c20be0">Metadata</a>
</li>
@@ -185,19 +253,32 @@ $(document).ready(function(){initNavTree('functions.html',''); initResizable();
<h3><a id="index_n"></a>- n -</h3><ul>
<li>N_R
: <a class="el" href="structOPATTable.html#a70b70699726b2f77b486702e913a164b">OPATTable</a>
</li>
<li>N_T
: <a class="el" href="structOPATTable.html#a87cc2d8e225e5e9c567602d779aec88f">OPATTable</a>
</li>
<li>name
: <a class="el" href="structconstant.html#af52cfa5a80b3641881d45eef6d597510">constant</a>
: <a class="el" href="structConstant.html#a8d8d2a81e9a8f36dfa02b4d23a5be55c">Constant</a>
</li>
<li>numTables
: <a class="el" href="structHeader.html#a162ced3913c3373d6d54c32274b99d72">Header</a>
</li>
</ul>
<h3><a id="index_o"></a>- o -</h3><ul>
<li>OpatIO()
: <a class="el" href="classOpatIO.html#a7f3436b3ac0dbe141b08d8064550f1b3">OpatIO</a>
</li>
<li>operator&lt;&lt;
: <a class="el" href="classDObject.html#a5b2896a287295bf59a0b9e4d0af21161">DObject</a>
: <a class="el" href="structConstant.html#ad298f7af7cdfd2e2267fd9e464558e2b">Constant</a>
, <a class="el" href="classDObject.html#a5b2896a287295bf59a0b9e4d0af21161">DObject</a>
, <a class="el" href="classMetadata.html#a9bc49cc23da2d1ff8b3e197630b9dfd2">Metadata</a>
</li>
<li>operator[]()
: <a class="el" href="classconstants.html#a32d515b1f539f6fdfc654ed5c8cba8e0">constants</a>
: <a class="el" href="classConstants.html#ad75620743b867fc20d4a05027d1a1c01">Constants</a>
</li>
</ul>
@@ -206,16 +287,28 @@ $(document).ready(function(){initNavTree('functions.html',''); initResizable();
<li>Plugin
: <a class="el" href="classDObject.html#af11334d08ef85c68b3aae7554548e5a7">DObject</a>
</li>
<li>printHeader()
: <a class="el" href="classOpatIO.html#a117f7e1f45d6c410c21d0644e447bbb1">OpatIO</a>
</li>
<li>printTable()
: <a class="el" href="classOpatIO.html#aa8037fc93588dd4c6cbec9bb7c76225f">OpatIO</a>
</li>
<li>printTableIndex()
: <a class="el" href="classOpatIO.html#afa623ba10f188097e555a682a4c69a9f">OpatIO</a>
</li>
</ul>
<h3><a id="index_r"></a>- r -</h3><ul>
<li>reference
: <a class="el" href="structconstant.html#a6be3abe8a0b5a3057d1ab572bd7aad76">constant</a>
: <a class="el" href="structConstant.html#a1c7e6c5a1d2316c98e59e04a234754d1">Constant</a>
</li>
<li>registerPlugin()
: <a class="el" href="classDObject.html#a15afffdf339150fc872bf63bdd08d581">DObject</a>
</li>
<li>reserved
: <a class="el" href="structHeader.html#af99697d38997984f2295c902d3ce1772">Header</a>
</li>
<li>runAllPlugins()
: <a class="el" href="classDObject.html#a1223275dcbbf20334ea11707346acb93">DObject</a>
</li>
@@ -247,15 +340,30 @@ $(document).ready(function(){initNavTree('functions.html',''); initResizable();
<li>setErrorCode()
: <a class="el" href="classDObject.html#a3dce47a519f9da5085c0c5ac1eea4f38">DObject</a>
</li>
<li>setFilename()
: <a class="el" href="classOpatIO.html#ad189e0f239bc4184fecf7daef7923272">OpatIO</a>
</li>
<li>setMaxQDepth()
: <a class="el" href="classOpatIO.html#ab0edd41690b8d5c1775f87439cf82cb5">OpatIO</a>
</li>
<li>sha256
: <a class="el" href="structTableIndex.html#a0c4826e48839977fa2bfaa1bf51b6cdb">TableIndex</a>
</li>
<li>sourceInfo
: <a class="el" href="structHeader.html#ac1a0c67ed5bd4021581fc00c2d79dba3">Header</a>
</li>
</ul>
<h3><a id="index_u"></a>- u -</h3><ul>
<li>uncertainty
: <a class="el" href="structconstant.html#aa23b68117657bec4bb8409eb30d1b3e4">constant</a>
: <a class="el" href="structConstant.html#a0ae09f22af150a41aa4169a4a60933be">Constant</a>
</li>
<li>unit
: <a class="el" href="structconstant.html#ace4a7f2bfc5b80a76c494e92349f9048">constant</a>
: <a class="el" href="structConstant.html#a2c46956a2d2b0ebf78ff99c5971130d2">Constant</a>
</li>
<li>unload()
: <a class="el" href="classOpatIO.html#ac1c1a6159f82462fedf9b526ddcc19a6">OpatIO</a>
</li>
<li>unlock()
: <a class="el" href="classLockableDObject.html#a1481ed99dcd837490bf28309aadaedfb">LockableDObject</a>
@@ -268,7 +376,31 @@ $(document).ready(function(){initNavTree('functions.html',''); initResizable();
<h3><a id="index_v"></a>- v -</h3><ul>
<li>value
: <a class="el" href="structconstant.html#a81804eeeca08f157af92766d5285064f">constant</a>
: <a class="el" href="structConstant.html#a3bda8d7fadd6fb2510fd39962a065a02">Constant</a>
</li>
<li>version
: <a class="el" href="structHeader.html#ac55e763f9e96050f4dab115a4a1c2356">Header</a>
</li>
</ul>
<h3><a id="index_x"></a>- x -</h3><ul>
<li>X
: <a class="el" href="structTableIndex.html#a303592792b2490da4105e294fb4666ca">TableIndex</a>
</li>
</ul>
<h3><a id="index_z"></a>- z -</h3><ul>
<li>Z
: <a class="el" href="structTableIndex.html#a7271de867fee8bb48a71f70afebbf0bd">TableIndex</a>
</li>
</ul>
<h3><a id="index__7E"></a>- ~ -</h3><ul>
<li>~OpatIO()
: <a class="el" href="classOpatIO.html#ac34f611a9eab458329553d27e8bffec6">OpatIO</a>
</li>
</ul>
</div><!-- contents -->

90
docs/html/functions_func.html
View File

@@ -95,8 +95,8 @@ $(document).ready(function(){initNavTree('functions_func.html',''); initResizabl
&#160;
<h3><a id="index_c"></a>- c -</h3><ul>
<li>constants()
: <a class="el" href="classconstants.html#a9be0748cd713f4a465b548e0c44458ee">constants</a>
<li>Constant()
: <a class="el" href="structConstant.html#a84ca5b6951cc8a8eccd083894302a857">Constant</a>
</li>
</ul>
@@ -110,12 +110,21 @@ $(document).ready(function(){initNavTree('functions_func.html',''); initResizabl
<h3><a id="index_g"></a>- g -</h3><ul>
<li>get()
: <a class="el" href="classconstants.html#a00666cb3d413cc53e4a3e629c2e22155">constants</a>
: <a class="el" href="classConstants.html#a36ddd7fe6857d1bbf6d1c84d4ed7bc19">Constants</a>
, <a class="el" href="classLockableDObject.html#adcfe201fc728cc1c6fcf638a566ba9a1">LockableDObject</a>
</li>
<li>getByteSize()
: <a class="el" href="classMetadata.html#ac7980d1efdd6ae434f0115f83d08348e">Metadata</a>
</li>
<li>getClosestTables()
: <a class="el" href="classOpatIO.html#a939e4edec4053517463f848648db770d">OpatIO</a>
</li>
<li>getClosestXTables()
: <a class="el" href="classOpatIO.html#a83acf4fe2aec4e588453b5a39a4def1a">OpatIO</a>
</li>
<li>getClosestZTables()
: <a class="el" href="classOpatIO.html#a9d9600e7af036deeada78da9afd4b65b">OpatIO</a>
</li>
<li>getData()
: <a class="el" href="classDObject.html#a4862655c3634d019b0a45b811d6f7235">DObject</a>
</li>
@@ -131,46 +140,71 @@ $(document).ready(function(){initNavTree('functions_func.html',''); initResizabl
<li>getErrorCode()
: <a class="el" href="classDObject.html#afa8926d916081de72478cb8813c25e98">DObject</a>
</li>
<li>getHeader()
: <a class="el" href="classOpatIO.html#afe725b647bc5bb802f6d711fc5dca3ab">OpatIO</a>
</li>
<li>getInstance()
: <a class="el" href="classConstants.html#aaa6f3af20fa563cf22df71a987923065">Constants</a>
</li>
<li>getMaxQDepth()
: <a class="el" href="classOpatIO.html#a48cd5e4f3fdb221bc1b6253e149e8e01">OpatIO</a>
</li>
<li>getOPATVersion()
: <a class="el" href="classOpatIO.html#a2894437c09f4cdb06c9b06d6aad4bd2f">OpatIO</a>
</li>
<li>getTable()
: <a class="el" href="classOpatIO.html#a0817f135f44e3bdc610d30df145f118d">OpatIO</a>
</li>
<li>getTableIndex()
: <a class="el" href="classOpatIO.html#af0bc6bb210c4ff74bc1e043aeb252e1a">OpatIO</a>
</li>
</ul>
<h3><a id="index_h"></a>- h -</h3><ul>
<li>has()
: <a class="el" href="classconstants.html#a35dcd5bb493bc095330b177819242c93">constants</a>
: <a class="el" href="classConstants.html#a2aa041fd223f259e55bf098c90581039">Constants</a>
</li>
</ul>
<h3><a id="index_i"></a>- i -</h3><ul>
<li>initialize()
: <a class="el" href="classconstants.html#ab08623c9c865188806b6820d3ed27fe9">constants</a>
</li>
<li>is_loaded()
: <a class="el" href="classconstants.html#ab72bcb21759e2e7f26f55f1d3454b999">constants</a>
</li>
<li>isDebugEnabled()
: <a class="el" href="classMetadata.html#abe52c81e04665628666b4140cd346b69">Metadata</a>
</li>
<li>isDebuggingEnabled()
: <a class="el" href="classDObject.html#ae47bf220fbe2173cf6933c2380035dbd">DObject</a>
</li>
<li>isLoaded()
: <a class="el" href="classConstants.html#ae276dfdc0ffe75a53e3842e33ab52630">Constants</a>
, <a class="el" href="classOpatIO.html#aba1be05d51d4b0b9e4581b95ad0e1890">OpatIO</a>
</li>
</ul>
<h3><a id="index_k"></a>- k -</h3><ul>
<li>keys()
: <a class="el" href="classconstants.html#a310c5d599cf21de82eaf0abe9bc5f9a0">constants</a>
: <a class="el" href="classConstants.html#ab9de36fa145552a3e7964e7e85a67149">Constants</a>
</li>
</ul>
<h3><a id="index_l"></a>- l -</h3><ul>
<li>load()
: <a class="el" href="classOpatIO.html#a3578ac9bad40dd45ada3459f92a93b56">OpatIO</a>
</li>
<li>lock()
: <a class="el" href="classLockableDObject.html#ade38ca54703913359fc3b4366f6e292a">LockableDObject</a>
</li>
<li>LockableDObject()
: <a class="el" href="classLockableDObject.html#ae1a174a2740fa053626fe2820ee0efee">LockableDObject</a>
</li>
<li>lookupClosestTableID()
: <a class="el" href="classOpatIO.html#af870ebd76bef969fa1f7c8270ac25cd8">OpatIO</a>
</li>
<li>lookupTableID()
: <a class="el" href="classOpatIO.html#a37959ed6845e09302bb8c206e3e006e4">OpatIO</a>
</li>
</ul>
@@ -182,8 +216,24 @@ $(document).ready(function(){initNavTree('functions_func.html',''); initResizabl
<h3><a id="index_o"></a>- o -</h3><ul>
<li>OpatIO()
: <a class="el" href="classOpatIO.html#a7f3436b3ac0dbe141b08d8064550f1b3">OpatIO</a>
</li>
<li>operator[]()
: <a class="el" href="classconstants.html#a32d515b1f539f6fdfc654ed5c8cba8e0">constants</a>
: <a class="el" href="classConstants.html#ad75620743b867fc20d4a05027d1a1c01">Constants</a>
</li>
</ul>
<h3><a id="index_p"></a>- p -</h3><ul>
<li>printHeader()
: <a class="el" href="classOpatIO.html#a117f7e1f45d6c410c21d0644e447bbb1">OpatIO</a>
</li>
<li>printTable()
: <a class="el" href="classOpatIO.html#aa8037fc93588dd4c6cbec9bb7c76225f">OpatIO</a>
</li>
<li>printTableIndex()
: <a class="el" href="classOpatIO.html#afa623ba10f188097e555a682a4c69a9f">OpatIO</a>
</li>
</ul>
@@ -223,10 +273,19 @@ $(document).ready(function(){initNavTree('functions_func.html',''); initResizabl
<li>setErrorCode()
: <a class="el" href="classDObject.html#a3dce47a519f9da5085c0c5ac1eea4f38">DObject</a>
</li>
<li>setFilename()
: <a class="el" href="classOpatIO.html#ad189e0f239bc4184fecf7daef7923272">OpatIO</a>
</li>
<li>setMaxQDepth()
: <a class="el" href="classOpatIO.html#ab0edd41690b8d5c1775f87439cf82cb5">OpatIO</a>
</li>
</ul>
<h3><a id="index_u"></a>- u -</h3><ul>
<li>unload()
: <a class="el" href="classOpatIO.html#ac1c1a6159f82462fedf9b526ddcc19a6">OpatIO</a>
</li>
<li>unlock()
: <a class="el" href="classLockableDObject.html#a1481ed99dcd837490bf28309aadaedfb">LockableDObject</a>
</li>
@@ -234,6 +293,13 @@ $(document).ready(function(){initNavTree('functions_func.html',''); initResizabl
: <a class="el" href="classDObject.html#a99b8688849e11501033a25f61efb8356">DObject</a>
</li>
</ul>
<h3><a id="index__7E"></a>- ~ -</h3><ul>
<li>~OpatIO()
: <a class="el" href="classOpatIO.html#ac34f611a9eab458329553d27e8bffec6">OpatIO</a>
</li>
</ul>
</div><!-- contents -->
</div><!-- doc-content -->
<!-- start footer part -->

3
docs/html/functions_rela.html
View File

@@ -94,7 +94,8 @@ $(document).ready(function(){initNavTree('functions_rela.html',''); initResizabl
<div class="contents">
&#160;<ul>
<li>operator&lt;&lt;
: <a class="el" href="classDObject.html#a5b2896a287295bf59a0b9e4d0af21161">DObject</a>
: <a class="el" href="structConstant.html#ad298f7af7cdfd2e2267fd9e464558e2b">Constant</a>
, <a class="el" href="classDObject.html#a5b2896a287295bf59a0b9e4d0af21161">DObject</a>
, <a class="el" href="classMetadata.html#a9bc49cc23da2d1ff8b3e197630b9dfd2">Metadata</a>
</li>
</ul>

3
docs/html/globals.html
View File

@@ -99,12 +99,13 @@ $(document).ready(function(){initNavTree('globals.html',''); initResizable(); })
</li>
<li>TEST_F()
: <a class="el" href="LockableDObjectTest_8cpp.html#aca2c2dcb4394094c27dc37453ea9a37f">LockableDObjectTest.cpp</a>
, <a class="el" href="opatIOTest_8cpp.html#ac3a79e8bac7362518c4495f4b9136a99">opatIOTest.cpp</a>
, <a class="el" href="MetadataTest_8cpp.html#a8854bc3bdde52a7c73927f17e4330a89">MetadataTest.cpp</a>
, <a class="el" href="LockableDObjectTest_8cpp.html#a5c2342bfafc553d23125fb3ae05af2a7">LockableDObjectTest.cpp</a>
, <a class="el" href="constTest_8cpp.html#ae050a185fbc60349459af47e661bd3e1">constTest.cpp</a>
, <a class="el" href="LockableDObjectTest_8cpp.html#a470f4e60873d3ea6afc7c319e307760f">LockableDObjectTest.cpp</a>
, <a class="el" href="DObjectTest_8cpp.html#ab0d7e76fe973dea21f97cf26d3b3847b">DObjectTest.cpp</a>
, <a class="el" href="constTest_8cpp.html#a6855bb766d336a17d11e54111ebcb225">constTest.cpp</a>
, <a class="el" href="constTest_8cpp.html#a267b8a580d24fec8326def8656df135a">constTest.cpp</a>
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3
docs/html/globals_func.html
View File

@@ -99,12 +99,13 @@ $(document).ready(function(){initNavTree('globals_func.html',''); initResizable(
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<li>TEST_F()
: <a class="el" href="LockableDObjectTest_8cpp.html#aca2c2dcb4394094c27dc37453ea9a37f">LockableDObjectTest.cpp</a>
, <a class="el" href="opatIOTest_8cpp.html#ac3a79e8bac7362518c4495f4b9136a99">opatIOTest.cpp</a>
, <a class="el" href="MetadataTest_8cpp.html#a8854bc3bdde52a7c73927f17e4330a89">MetadataTest.cpp</a>
, <a class="el" href="LockableDObjectTest_8cpp.html#a5c2342bfafc553d23125fb3ae05af2a7">LockableDObjectTest.cpp</a>
, <a class="el" href="constTest_8cpp.html#ae050a185fbc60349459af47e661bd3e1">constTest.cpp</a>
, <a class="el" href="LockableDObjectTest_8cpp.html#a470f4e60873d3ea6afc7c319e307760f">LockableDObjectTest.cpp</a>
, <a class="el" href="DObjectTest_8cpp.html#ab0d7e76fe973dea21f97cf26d3b3847b">DObjectTest.cpp</a>
, <a class="el" href="constTest_8cpp.html#a6855bb766d336a17d11e54111ebcb225">constTest.cpp</a>
, <a class="el" href="constTest_8cpp.html#a267b8a580d24fec8326def8656df135a">constTest.cpp</a>
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170
docs/html/navtreeindex0.js
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10
docs/latex/annotated.tex
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@@ -1,13 +1,17 @@
\doxysection{Class List}
Here are the classes, structs, unions and interfaces with brief descriptions\+:\begin{DoxyCompactList}
\item\contentsline{section}{\mbox{\hyperlink{classCell}{Cell}} }{\pageref{classCell}}{}
\item\contentsline{section}{\mbox{\hyperlink{structconstant}{constant}} \\*Structure to hold a constant\textquotesingle{}s details }{\pageref{structconstant}}{}
\item\contentsline{section}{\mbox{\hyperlink{classconstants}{constants}} \\*Class to manage a collection of constants }{\pageref{classconstants}}{}
\item\contentsline{section}{\mbox{\hyperlink{structConstant}{Constant}} \\*Structure to hold a constant\textquotesingle{}s details }{\pageref{structConstant}}{}
\item\contentsline{section}{\mbox{\hyperlink{classConstants}{Constants}} \\*Class to manage a collection of constants }{\pageref{classConstants}}{}
\item\contentsline{section}{\mbox{\hyperlink{classconstTest}{const\+Test}} \\*Test suite for the const class }{\pageref{classconstTest}}{}
\item\contentsline{section}{\mbox{\hyperlink{classDObject}{DObject}} \\*A universal data container class }{\pageref{classDObject}}{}
\item\contentsline{section}{\mbox{\hyperlink{classDObjectTest}{DObject\+Test}} \\*Test suite for the \mbox{\hyperlink{classDObject}{DObject}} class }{\pageref{classDObjectTest}}{}
\item\contentsline{section}{\mbox{\hyperlink{structHeader}{Header}} \\*Structure to hold the header information of an OPAT file }{\pageref{structHeader}}{}
\item\contentsline{section}{\mbox{\hyperlink{classLockableDObject}{Lockable\+DObject}} \\*Wrapper for \mbox{\hyperlink{classDObject}{DObject}} with thread-\/safe access }{\pageref{classLockableDObject}}{}
\item\contentsline{section}{\mbox{\hyperlink{classLockableDObjectTest}{Lockable\+DObject\+Test}} \\*Test suite for the \mbox{\hyperlink{classLockableDObject}{Lockable\+DObject}} class }{\pageref{classLockableDObjectTest}}{}
\item\contentsline{section}{\mbox{\hyperlink{classMetadata}{Metadata}} \\*Represents metadata information for data objects in the dobj module }{\pageref{classMetadata}}{}
\item\contentsline{section}{\mbox{\hyperlink{classMetadataTest}{Metadata\+Test}} \\*Test suite for the \mbox{\hyperlink{classMetadata}{Metadata}} class }{\pageref{classMetadataTest}}{}
\item\contentsline{section}{\mbox{\hyperlink{classOpatIO}{Opat\+IO}} \\*Class to manage the input/output operations for OPAT files }{\pageref{classOpatIO}}{}
\item\contentsline{section}{\mbox{\hyperlink{classopatIOTest}{opat\+IOTest}} \\*Test suite for the const class }{\pageref{classopatIOTest}}{}
\item\contentsline{section}{\mbox{\hyperlink{structOPATTable}{OPATTable}} \\*Structure to hold the data of an OPAT table }{\pageref{structOPATTable}}{}
\item\contentsline{section}{\mbox{\hyperlink{structTableIndex}{Table\+Index}} \\*Structure to hold the index information of a table in an OPAT file }{\pageref{structTableIndex}}{}
\end{DoxyCompactList}

5
docs/latex/files.tex
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@@ -6,12 +6,11 @@ Here is a list of all documented files with brief descriptions\+:\begin{DoxyComp
\item\contentsline{section}{src/dobj/public/\mbox{\hyperlink{DObject_8h}{DObject.\+h}} \\*Defines the \mbox{\hyperlink{classDObject}{DObject}} class, a universal data container for the project }{\pageref{DObject_8h}}{}
\item\contentsline{section}{src/dobj/public/\mbox{\hyperlink{LockableDObject_8h}{Lockable\+DObject.\+h}} \\*A lightweight wrapper for \mbox{\hyperlink{classDObject}{DObject}} that adds locking capabilities }{\pageref{LockableDObject_8h}}{}
\item\contentsline{section}{src/dobj/public/\mbox{\hyperlink{Metadata_8h}{Metadata.\+h}} \\*Public interface for the \mbox{\hyperlink{classMetadata}{Metadata}} class used in the dobj module }{\pageref{Metadata_8h}}{}
\item\contentsline{section}{src/mapping/private/{\bfseries grid.\+h} }{\pageref{grid_8h}}{}
\item\contentsline{section}{src/mapping/private/{\bfseries mapper.\+h} }{\pageref{mapper_8h}}{}
\item\contentsline{section}{src/mesh/public/{\bfseries mesh.\+h} }{\pageref{mesh_8h}}{}
\item\contentsline{section}{src/opac/public/{\bfseries opac.\+h} }{\pageref{opac_8h}}{}
\item\contentsline{section}{src/opat\+IO/public/{\bfseries opat\+IO.\+h} }{\pageref{opatIO_8h}}{}
\item\contentsline{section}{tests/const/\mbox{\hyperlink{constTest_8cpp}{const\+Test.\+cpp}} \\*Unit tests for the const class }{\pageref{constTest_8cpp}}{}
\item\contentsline{section}{tests/dobj/\mbox{\hyperlink{DObjectTest_8cpp}{DObject\+Test.\+cpp}} \\*Unit tests for the \mbox{\hyperlink{classDObject}{DObject}} class }{\pageref{DObjectTest_8cpp}}{}
\item\contentsline{section}{tests/dobj/\mbox{\hyperlink{LockableDObjectTest_8cpp}{Lockable\+DObject\+Test.\+cpp}} \\*Unit tests for the \mbox{\hyperlink{classLockableDObject}{Lockable\+DObject}} class }{\pageref{LockableDObjectTest_8cpp}}{}
\item\contentsline{section}{tests/dobj/\mbox{\hyperlink{MetadataTest_8cpp}{Metadata\+Test.\+cpp}} \\*Unit tests and integration tests for the \mbox{\hyperlink{classMetadata}{Metadata}} class }{\pageref{MetadataTest_8cpp}}{}
\item\contentsline{section}{tests/opat\+IO/\mbox{\hyperlink{opatIOTest_8cpp}{opat\+IOTest.\+cpp}} \\*Unit tests for the \mbox{\hyperlink{classOpatIO}{Opat\+IO}} class and associated structs }{\pageref{opatIOTest_8cpp}}{}
\end{DoxyCompactList}

11
docs/latex/refman.tex
View File

@@ -182,16 +182,20 @@
\chapter{File Index}
\input{files}
\chapter{Class Documentation}
\input{classCell}
\input{structconstant}
\input{classconstants}
\input{structConstant}
\input{classConstants}
\input{classconstTest}
\input{classDObject}
\input{classDObjectTest}
\input{structHeader}
\input{classLockableDObject}
\input{classLockableDObjectTest}
\input{classMetadata}
\input{classMetadataTest}
\input{classOpatIO}
\input{classopatIOTest}
\input{structOPATTable}
\input{structTableIndex}
\chapter{File Documentation}
\input{DObject_8cpp}
\input{Metadata_8cpp}
@@ -202,6 +206,7 @@
\input{DObjectTest_8cpp}
\input{LockableDObjectTest_8cpp}
\input{MetadataTest_8cpp}
\input{opatIOTest_8cpp}
%--- End generated contents ---
% Index

237
src/opatIO/public/opatIO.h
View File

@@ -9,93 +9,264 @@
#include <map>
#include <utility>
/**
* @brief Structure to hold the header information of an OPAT file.
*/
#pragma pack(1)
struct Header {
char magic[4];
uint16_t version;
uint32_t numTables;
uint32_t headerSize;
uint64_t indexOffset;
char creationDate[16];
char sourceInfo[64];
char comment[128];
char reserved[26];
char magic[4]; ///< Magic number to identify the file type
uint16_t version; ///< Version of the OPAT file format
uint32_t numTables; ///< Number of tables in the file
uint32_t headerSize; ///< Size of the header
uint64_t indexOffset; ///< Offset to the index section
char creationDate[16]; ///< Creation date of the file
char sourceInfo[64]; ///< Source information
char comment[128]; ///< Comment section
char reserved[26]; ///< Reserved for future use
};
#pragma pack()
/**
* @brief Structure to hold the index information of a table in an OPAT file.
*/
struct TableIndex {
double X;
double Z;
// double C; // For type 2 OPAL tables. When not set will be 0
// double O; // For type 2 OPAL tables. When not set will be 0
uint64_t byteStart;
uint64_t byteEnd;
char sha256[32];
double X; ///< X composition value
double Z; ///< Z composition value
uint64_t byteStart; ///< Byte start position of the table
uint64_t byteEnd; ///< Byte end position of the table
char sha256[32]; ///< SHA-256 hash of the table data
};
/**
* @brief Structure to hold the data of an OPAT table.
*/
struct OPATTable {
uint32_t N_R;
uint32_t N_T;
std::vector<double> logR;
std::vector<double> logT;
std::vector<std::vector<double>> logKappa;
uint32_t N_R; ///< Number of R values
uint32_t N_T; ///< Number of T values
std::vector<double> logR; ///< Logarithm of R values
std::vector<double> logT; ///< Logarithm of T values
std::vector<std::vector<double>> logKappa; ///< Logarithm of Kappa values
};
class opatIOTest; // Friend for gtest
/**
* @brief Class to manage the input/output operations for OPAT files.
*/
class OpatIO {
private:
Header header;
std::vector<TableIndex> tableIndex;
std::deque<std::pair<int, OPATTable>> tableQueue;
std::map<int, std::pair<double, double>> tableIDToComposition;
std::pair<double, double> XZepsilon;
int maxQDepth = 10;
std::string filename;
bool loaded = false;
Header header; ///< Header information of the OPAT file
std::vector<TableIndex> tableIndex; ///< Index information of the tables
std::deque<std::pair<int, OPATTable>> tableQueue; ///< Queue to manage table caching
std::map<int, std::pair<double, double>> tableIDToComposition; ///< Map to store table ID to composition mapping
std::pair<double, double> XZepsilon; ///< Epsilon values for X and Z
int maxQDepth = 10; ///< Maximum depth of the table queue
std::string filename; ///< Filename of the OPAT file
bool loaded = false; ///< Flag to indicate if the file is loaded
/**
* @brief Read the header from the file.
* @param file The input file stream.
*/
void readHeader(std::ifstream &file);
/**
* @brief Read the table index from the file.
* @param file The input file stream.
*/
void readTableIndex(std::ifstream &file);
/**
* @brief Get a table from the queue.
* @param tableID The ID of the table.
* @return The OPAT table.
*/
OPATTable getTableFromQueue(int tableID);
/**
* @brief Add a table to the queue.
* @param tableID The ID of the table.
* @param table The OPAT table.
*/
void addTableToQueue(int tableID, OPATTable table);
/**
* @brief Remove a table from the queue.
*/
void removeTableFromQueue();
/**
* @brief Flush the table queue.
*/
void flushQueue();
/**
* @brief Get a table by its ID.
* @param tableID The ID of the table.
* @return The OPAT table.
*/
OPATTable getTable(int tableID);
/**
* @brief Print a table.
* @param table The OPAT table.
* @param truncateDigits Number of digits to truncate.
*/
void printTable(OPATTable table, uint32_t truncateDigits=5);
/**
* @brief Lookup epsilon values for X and Z.
*/
void XZLookupEpsilon();
/**
* @brief Build the table ID to composition mapping.
*/
void buildTableIDToComposition();
public:
/**
* @brief Default constructor.
*/
OpatIO();
/**
* @brief Constructor with filename.
* @param filename The name of the OPAT file.
*/
OpatIO(std::string filename);
/**
* @brief Destructor.
*/
~OpatIO();
/**
* @brief Get a table by X and Z values.
* @param X The X composition value.
* @param Z The Z composition value.
* @return The OPAT table.
*/
OPATTable getTable(double X, double Z);
/**
* @brief Set the maximum depth of the table queue.
* @param depth The maximum depth.
*/
void setMaxQDepth(int depth);
/**
* @brief Get the maximum depth of the table queue.
* @return The maximum depth.
*/
int getMaxQDepth();
/**
* @brief Set the filename of the OPAT file.
* @param filename The name of the file.
*/
void setFilename(std::string filename);
/**
* @brief Load the OPAT file.
*/
void load();
/**
* @brief Unload the OPAT file.
*/
void unload();
/**
* @brief Check if the file is loaded.
* @return True if the file is loaded, false otherwise.
*/
bool isLoaded();
/**
* @brief Print the header information.
*/
void printHeader();
/**
* @brief Print the table index.
*/
void printTableIndex();
/**
* @brief Print a table by X and Z values.
* @param X The X composition value.
* @param Z The Z composition value.
* @param truncateDigits Number of digits to truncate.
*/
void printTable(double X, double Z, uint32_t truncateDigits=5);
/**
* @brief Get the table index.
* @return A vector of TableIndex structures.
*/
std::vector<TableIndex> getTableIndex();
/**
* @brief Get the header information.
* @return The Header structure.
*/
Header getHeader();
/**
* @brief Get the closest tables by X value.
* @param X The X composition value.
* @param ZExact The exact Z composition value.
* @param C The C composition value (default is 0).
* @param O The O composition value (default is 0).
* @param numTables The number of closest tables to retrieve (default is 1).
* @return A vector of OPAT tables.
*/
std::vector<OPATTable> getClosestXTables(double X, double ZExact, double C=0, double O=0, int numTables=1);
std::vector<OPATTable> getClosestZTables(double XExact, double Z, double C=0, double O=0, int numTables=1);
std::vector<OPATTable> getClosestTables(double X, double Z, double C=0, double O=0, int numTables=1);
/**
* @brief Get the closest tables by Z value.
* @param XExact The exact X composition value.
* @param Z The Z composition value.
* @param C The C composition value (default is 0).
* @param O The O composition value (default is 0).
* @param numTables The number of closest tables to retrieve (default is 1).
* @return A vector of OPAT tables.
*/
std::vector<OPATTable> getClosestZTables(double XExact, double Z, double C=0, double O=0, int numTables=1);
/**
* @brief Get the closest tables by X and Z values.
* @param X The X composition value.
* @param Z The Z composition value.
* @param C The C composition value (default is 0).
* @param O The O composition value (default is 0).
* @param numTables The number of closest tables to retrieve (default is 1).
* @return A vector of OPAT tables.
*/
std::vector<OPATTable> getClosestTables(double X, double Z, double C=0, double O=0, int numTables=1);
/**
* @brief Lookup the table ID by X and Z values.
* @param X The X composition value.
* @param Z The Z composition value.
* @return The table ID.
*/
int lookupTableID(double X, double Z);
/**
* @brief Lookup the closest table ID by X and Z values.
* @param X The X composition value.
* @param Z The Z composition value.
* @return The closest table ID.
*/
int lookupClosestTableID(double X, double Z);
/**
* @brief Get the version of the OPAT file format.
* @return The version of the OPAT file format.
*/
uint16_t getOPATVersion();
};
#endif