ci(.gitignore): updated gitignore

Note for now much of the docs is LLM written. This was done to save time and focus on code development. The docs have been LOOSLEY reviewed. However, the code itself has been either fully written by hand or fully reviewed. Therefore, the docs should at the moment be seen as a loose resource rather than authoratiative (and this is on top of the general ability for docs to drift)

.gitignore

@@ -11,3 +11,13 @@ subprojects/packagecache/
 subprojects/*/
 !subprojects/packagefiles/
 
+subprojects/imgui-docking.wrap
+subprojects/raylib.wrap
+subprojects/czmq.wrap
+
+.DS_Store
+.codex
+.idea
+profiling/
+reports/
+

benchmarks/backend_operator.cpp

@@ -1,373 +0,0 @@
-#include <meson_mfem_template/config.hpp>
-#include <mfem.hpp>
-
-#include <cmath>
-#include <cstdlib>
-#include <functional>
-#include <iomanip>
-#include <iostream>
-#include <memory>
-#include <sstream>
-#include <string>
-
-#if !MESON_MFEM_HAS_MPI || !MESON_MFEM_HAS_HYPRE
-#error "The backend benchmark requires MFEM with MPI and Hypre"
-#endif
-
-namespace
-{
-
-constexpr const char *json_prefix = "MFEM_BENCHMARK_JSON ";
-
-double AnalyticField(const mfem::Vector &point)
-{
-   constexpr double pi = 3.141592653589793238462643383279502884;
-   return std::sin(pi * point[0]) * std::sin(pi * point[1]) *
-          std::sin(pi * point[2]);
-}
-
-void SynchronizeDevice(bool uses_gpu)
-{
-   if (uses_gpu) { MFEM_DEVICE_SYNC; }
-}
-
-double MaxTimedRegion(MPI_Comm communicator, bool uses_gpu,
-                      const std::function<void()> &operation)
-{
-   SynchronizeDevice(uses_gpu);
-   MPI_Barrier(communicator);
-   const double begin = MPI_Wtime();
-   operation();
-   SynchronizeDevice(uses_gpu);
-   const double local_seconds = MPI_Wtime() - begin;
-   double maximum_seconds = 0.0;
-   MPI_Allreduce(&local_seconds, &maximum_seconds, 1, MPI_DOUBLE, MPI_MAX,
-                 communicator);
-   return maximum_seconds;
-}
-
-std::string JsonEscape(const std::string &value)
-{
-   std::ostringstream escaped;
-   for (const char character : value)
-   {
-      switch (character)
-      {
-         case '\\': escaped << "\\\\"; break;
-         case '"': escaped << "\\\""; break;
-         case '\n': escaped << "\\n"; break;
-         case '\r': escaped << "\\r"; break;
-         case '\t': escaped << "\\t"; break;
-         default: escaped << character; break;
-      }
-   }
-   return escaped.str();
-}
-
-int PositiveEnvironmentInteger(const char *name, int fallback)
-{
-   const char *value = std::getenv(name);
-   if (value == nullptr) { return fallback; }
-   char *end = nullptr;
-   const long parsed = std::strtol(value, &end, 10);
-   return end != value && *end == '\0' && parsed > 0
-             ? static_cast<int>(parsed)
-             : fallback;
-}
-
-}  // namespace
-
-int main(int argc, char **argv)
-{
-   mfem::Mpi::Init(argc, argv);
-   mfem::Hypre::Init();
-   MPI_Comm communicator = MPI_COMM_WORLD;
-   const int rank = mfem::Mpi::WorldRank();
-   const int ranks = mfem::Mpi::WorldSize();
-   const double process_begin = MPI_Wtime();
-
-   const char *device_name = "cpu";
-   int mesh_n = 32;
-   int order = 3;
-   int applications = 50;
-   int warmup_applications = 5;
-   int maximum_applications = 1000000;
-   int maximum_iterations = 1000;
-   int trial = 0;
-   double relative_tolerance = 1.0e-6;
-   double minimum_apply_seconds = 0.0;
-   bool run_solve = false;
-
-   mfem::OptionsParser options(argc, argv);
-   options.AddOption(&device_name, "-d", "--device",
-                     "MFEM device string (cpu, omp, ceed-cpu, cuda, ...). ");
-   options.AddOption(&mesh_n, "-n", "--mesh-n",
-                     "Elements per dimension in the fixed global mesh.");
-   options.AddOption(&order, "-o", "--order", "H1 polynomial order.");
-   options.AddOption(&applications, "-a", "--applications",
-                     "Number of timed distributed operator applications.");
-   options.AddOption(&warmup_applications, "-w", "--warmup-applications",
-                     "Untimed operator applications before measurement.");
-   options.AddOption(&maximum_applications, "-ma", "--max-applications",
-                     "Safety cap for automatically calibrated applications.");
-   options.AddOption(&minimum_apply_seconds, "-mt", "--minimum-apply-seconds",
-                     "Minimum final timing window; zero keeps the requested count.");
-   options.AddOption(&maximum_iterations, "-m", "--max-iterations",
-                     "Maximum iterations for the identically configured CG solve.");
-   options.AddOption(&relative_tolerance, "-r", "--relative-tolerance",
-                     "Relative tolerance for the identically configured CG solve.");
-   options.AddOption(&run_solve, "-s", "--solve", "-no-s", "--no-solve",
-                     "Run the optional Jacobi-preconditioned CG validation solve.");
-   options.AddOption(&trial, "-t", "--trial",
-                     "Trial identifier copied into the JSON record.");
-   options.Parse();
-   if (!options.Good())
-   {
-      if (rank == 0) { options.PrintUsage(std::cerr); }
-      return 2;
-   }
-   if (mesh_n < 2 || order < 1 || applications < 1 ||
-       warmup_applications < 0 || maximum_applications < applications ||
-       maximum_iterations < 1 || relative_tolerance <= 0.0 ||
-       minimum_apply_seconds < 0.0)
-   {
-      if (rank == 0)
-      {
-         std::cerr << "All sizes/counts must be positive (warmups may be zero).\n";
-      }
-      return 2;
-   }
-
-   std::unique_ptr<mfem::Device> device;
-   MPI_Barrier(communicator);
-   const double device_begin = MPI_Wtime();
-   device = std::make_unique<mfem::Device>(device_name);
-   const bool uses_gpu = mfem::Device::Allows(
-      mfem::Backend::CUDA_MASK | mfem::Backend::HIP_MASK);
-   SynchronizeDevice(uses_gpu);
-   const double local_device_seconds = MPI_Wtime() - device_begin;
-   double device_seconds = 0.0;
-   MPI_Allreduce(&local_device_seconds, &device_seconds, 1, MPI_DOUBLE, MPI_MAX,
-                 communicator);
-
-   std::unique_ptr<mfem::ParMesh> mesh;
-   const double mesh_seconds = MaxTimedRegion(communicator, uses_gpu, [&]() {
-      mfem::Mesh serial_mesh = mfem::Mesh::MakeCartesian3D(
-         mesh_n, mesh_n, mesh_n, mfem::Element::HEXAHEDRON);
-      mfem::Array<int> partitioning(serial_mesh.GetNE());
-      for (int element = 0; element < serial_mesh.GetNE(); ++element)
-      {
-         partitioning[element] = static_cast<long long>(element) * ranks /
-                                 serial_mesh.GetNE();
-      }
-      mesh = std::make_unique<mfem::ParMesh>(communicator, serial_mesh,
-                                             partitioning.GetData());
-   });
-
-   std::unique_ptr<mfem::H1_FECollection> elements;
-   std::unique_ptr<mfem::ParFiniteElementSpace> space;
-   const double space_seconds = MaxTimedRegion(communicator, uses_gpu, [&]() {
-      elements = std::make_unique<mfem::H1_FECollection>(
-         order, mesh->Dimension(), mfem::BasisType::GaussLobatto);
-      space = std::make_unique<mfem::ParFiniteElementSpace>(mesh.get(),
-                                                            elements.get());
-   });
-
-   mfem::Array<int> essential_boundary(mesh->bdr_attributes.Max());
-   essential_boundary = 1;
-   mfem::Array<int> essential_dofs;
-   space->GetEssentialTrueDofs(essential_boundary, essential_dofs);
-
-   mfem::ConstantCoefficient one(1.0);
-   auto right_hand_side = std::make_unique<mfem::ParLinearForm>(space.get());
-   auto solution = std::make_unique<mfem::ParGridFunction>(space.get());
-   auto diffusion = std::make_unique<mfem::ParBilinearForm>(space.get());
-   const double assembly_seconds = MaxTimedRegion(communicator, uses_gpu, [&]() {
-      right_hand_side->AddDomainIntegrator(new mfem::DomainLFIntegrator(one));
-      right_hand_side->Assemble();
-      *solution = 0.0;
-      diffusion->SetAssemblyLevel(mfem::AssemblyLevel::PARTIAL);
-      diffusion->AddDomainIntegrator(new mfem::DiffusionIntegrator(one));
-      diffusion->Assemble();
-   });
-
-   mfem::OperatorPtr system_operator;
-   mfem::Vector linear_right_hand_side;
-   mfem::Vector linear_solution;
-   const double form_seconds = MaxTimedRegion(communicator, uses_gpu, [&]() {
-      diffusion->FormLinearSystem(essential_dofs, *solution, *right_hand_side,
-                                  system_operator, linear_solution,
-                                  linear_right_hand_side);
-   });
-
-   std::unique_ptr<mfem::OperatorJacobiSmoother> preconditioner;
-   double preconditioner_seconds = 0.0;
-   if (run_solve)
-   {
-      preconditioner_seconds = MaxTimedRegion(
-         communicator, uses_gpu, [&]() {
-         preconditioner = std::make_unique<mfem::OperatorJacobiSmoother>(
-            *diffusion, essential_dofs);
-      });
-   }
-
-   mfem::FunctionCoefficient analytic(AnalyticField);
-   mfem::ParGridFunction probe_field(space.get());
-   probe_field.ProjectCoefficient(analytic);
-   mfem::Vector probe_input;
-   probe_field.GetTrueDofs(probe_input);
-   mfem::Vector probe_output(system_operator->Height());
-   probe_input.UseDevice(true);
-   probe_output.UseDevice(true);
-
-   for (int application = 0; application < warmup_applications; ++application)
-   {
-      system_operator->Mult(probe_input, probe_output);
-   }
-   SynchronizeDevice(uses_gpu);
-
-   const int requested_applications = applications;
-   int timed_applications = requested_applications;
-   if (minimum_apply_seconds > 0.0)
-   {
-      while (true)
-      {
-         const double calibration_seconds = MaxTimedRegion(
-            communicator, uses_gpu, [&]() {
-               for (int application = 0; application < timed_applications;
-                    ++application)
-               {
-                  system_operator->Mult(probe_input, probe_output);
-               }
-            });
-         if (calibration_seconds >= minimum_apply_seconds ||
-             timed_applications == maximum_applications)
-         {
-            break;
-         }
-         timed_applications = timed_applications > maximum_applications / 2
-            ? maximum_applications
-            : timed_applications * 2;
-      }
-   }
-   const double apply_seconds = MaxTimedRegion(
-      communicator, uses_gpu, [&]() {
-         for (int application = 0; application < timed_applications;
-              ++application)
-         {
-            system_operator->Mult(probe_input, probe_output);
-         }
-      });
-
-   const double probe_norm = std::sqrt(
-      mfem::InnerProduct(communicator, probe_output, probe_output));
-   double solve_seconds = 0.0;
-   int cg_iterations = 0;
-   bool cg_converged = false;
-   double cg_final_norm = 0.0;
-   double relative_residual = 0.0;
-   double solution_norm = 0.0;
-   if (run_solve)
-   {
-      mfem::CGSolver solver(communicator);
-      solver.SetPreconditioner(*preconditioner);
-      solver.SetOperator(*system_operator);
-      solver.SetRelTol(relative_tolerance);
-      solver.SetAbsTol(0.0);
-      solver.SetPrintLevel(-1);
-      solver.iterative_mode = false;
-
-      linear_solution = 0.0;
-      solver.SetMaxIter(2);
-      solver.Mult(linear_right_hand_side, linear_solution);
-      SynchronizeDevice(uses_gpu);
-
-      linear_solution = 0.0;
-      solver.SetMaxIter(maximum_iterations);
-      solve_seconds = MaxTimedRegion(communicator, uses_gpu, [&]() {
-         solver.Mult(linear_right_hand_side, linear_solution);
-      });
-      cg_iterations = solver.GetNumIterations();
-      cg_converged = solver.GetConverged();
-      cg_final_norm = solver.GetFinalNorm();
-
-      mfem::Vector applied_solution(system_operator->Height());
-      mfem::Vector residual(linear_right_hand_side);
-      system_operator->Mult(linear_solution, applied_solution);
-      residual -= applied_solution;
-      SynchronizeDevice(uses_gpu);
-
-      const double right_hand_side_norm_squared = mfem::InnerProduct(
-         communicator, linear_right_hand_side, linear_right_hand_side);
-      const double residual_norm_squared = mfem::InnerProduct(
-         communicator, residual, residual);
-      relative_residual = right_hand_side_norm_squared > 0.0
-         ? std::sqrt(residual_norm_squared / right_hand_side_norm_squared)
-         : std::sqrt(residual_norm_squared);
-      solution_norm = std::sqrt(
-         mfem::InnerProduct(communicator, linear_solution, linear_solution));
-   }
-
-   const auto global_dofs = space->GlobalTrueVSize();
-   const auto global_elements = mesh->GetGlobalNE();
-   const double mdof_per_second =
-      1.0e-6 * static_cast<double>(global_dofs) * timed_applications /
-      apply_seconds;
-   const int omp_threads = PositiveEnvironmentInteger("OMP_NUM_THREADS", 1);
-   const bool solve_valid = !run_solve ||
-      (cg_converged && std::isfinite(relative_residual) &&
-       relative_residual <= 10.0 * relative_tolerance &&
-       std::isfinite(solution_norm) && solution_norm > 0.0);
-   const bool valid = solve_valid && std::isfinite(probe_norm) &&
-                      probe_norm > 0.0;
-
-   SynchronizeDevice(uses_gpu);
-   MPI_Barrier(communicator);
-   const double local_total_seconds = MPI_Wtime() - process_begin;
-   double total_seconds = 0.0;
-   MPI_Allreduce(&local_total_seconds, &total_seconds, 1, MPI_DOUBLE, MPI_MAX,
-                 communicator);
-
-   if (rank == 0)
-   {
-      std::cout << std::setprecision(17) << json_prefix
-                << '{'
-                << "\"schema_version\":1,"
-                << "\"trial\":" << trial << ','
-                << "\"device\":\"" << JsonEscape(device_name) << "\","
-                << "\"ranks\":" << ranks << ','
-                << "\"omp_threads\":" << omp_threads << ','
-                << "\"dimension\":3,"
-                << "\"mesh_n\":" << mesh_n << ','
-                << "\"order\":" << order << ','
-                << "\"global_elements\":" << global_elements << ','
-                << "\"global_true_dofs\":" << global_dofs << ','
-                << "\"assembly\":\"partial\","
-                << "\"warmup_applications\":" << warmup_applications << ','
-                << "\"requested_applications\":" << requested_applications << ','
-                << "\"applications\":" << timed_applications << ','
-                << "\"minimum_apply_seconds\":" << minimum_apply_seconds << ','
-                << "\"device_seconds\":" << device_seconds << ','
-                << "\"mesh_seconds\":" << mesh_seconds << ','
-                << "\"space_seconds\":" << space_seconds << ','
-                << "\"assembly_seconds\":" << assembly_seconds << ','
-                << "\"form_seconds\":" << form_seconds << ','
-                << "\"preconditioner_seconds\":" << preconditioner_seconds << ','
-                << "\"apply_seconds\":" << apply_seconds << ','
-                << "\"apply_mdof_per_second\":" << mdof_per_second << ','
-                << "\"solve_ran\":" << (run_solve ? "true" : "false") << ','
-                << "\"solve_seconds\":" << solve_seconds << ','
-                << "\"cg_iterations\":" << cg_iterations << ','
-                << "\"cg_converged\":"
-                << (cg_converged ? "true" : "false") << ','
-                << "\"cg_final_norm\":" << cg_final_norm << ','
-                << "\"verified_relative_residual\":" << relative_residual << ','
-                << "\"probe_norm\":" << probe_norm << ','
-                << "\"solution_norm\":" << solution_norm << ','
-                << "\"total_seconds\":" << total_seconds << ','
-                << "\"valid\":" << (valid ? "true" : "false")
-                << "}\n";
-   }
-
-   return valid ? 0 : 3;
-}

benchmarks/meson.build

@@ -1,142 +0,0 @@
-benchmark_executable = []
-benchmark_mpi_launcher = ''
-
-if get_option('build_benchmarks')
-  if is_wasm
-    error('build_benchmarks requires a native target; use the web demo for Emscripten')
-  endif
-  if not mfem_has_mpi
-    error('build_benchmarks requires -Dmfem_mpi=enabled (and therefore Hypre)')
-  endif
-
-  benchmark_accelerator_deps = []
-  if mfem_has_cuda
-    benchmark_nvcc = dependency_has_nvcc ? (
-      dependency_prefix / 'bin' / 'nvcc'
-    ) : nvcc_program.full_path()
-    benchmark_cuda_root_result = run_command(
-      python_build,
-      '-c',
-      'import os, sys; print(os.path.dirname(os.path.dirname(os.path.realpath(sys.argv[1]))))',
-      benchmark_nvcc,
-      check: true,
-    )
-    benchmark_cuda_root = benchmark_cuda_root_result.stdout().strip()
-    benchmark_accelerator_deps += [cpp.find_library(
-      'cudart',
-      dirs: [
-        benchmark_cuda_root / 'lib64',
-        benchmark_cuda_root / 'lib',
-        benchmark_cuda_root / 'lib' / 'x64',
-        benchmark_cuda_root / 'targets' / 'x86_64-linux' / 'lib',
-        benchmark_cuda_root / 'targets' / 'aarch64-linux' / 'lib',
-        benchmark_cuda_root / 'targets' / 'ppc64le-linux' / 'lib',
-      ],
-      required: true,
-    )]
-  endif
-  if mfem_has_hip
-    benchmark_hipcc = dependency_has_hipcc ? (
-      dependency_prefix / 'bin' / 'hipcc'
-    ) : hipcc_program.full_path()
-    benchmark_hip_root_result = run_command(
-      python_build,
-      '-c',
-      'import os, sys; print(os.path.dirname(os.path.dirname(os.path.realpath(sys.argv[1]))))',
-      benchmark_hipcc,
-      check: true,
-    )
-    benchmark_hip_root = benchmark_hip_root_result.stdout().strip()
-    benchmark_accelerator_deps += [cpp.find_library(
-      'amdhip64',
-      dirs: [benchmark_hip_root / 'lib', benchmark_hip_root / 'lib64'],
-      required: true,
-    )]
-  endif
-
-  benchmark_build_rpath = mfem_runtime_prefix == '' ? '' : mfem_runtime_prefix / 'lib'
-  benchmark_install_rpath = ''
-  if mfem_runtime_prefix != '' and not is_windows
-    benchmark_install_rpath = host_machine.system() == 'darwin' ? '@loader_path/../lib' : '$ORIGIN/../lib'
-  endif
-
-  benchmark_executable = executable(
-    'mfem-backend-benchmark',
-    'backend_operator.cpp',
-    dependencies: [mfem_dep, template_include_dep] + benchmark_accelerator_deps,
-    override_options: ['cpp_std=' + mfem_consumer_cpp_std],
-    build_rpath: benchmark_build_rpath,
-    install_rpath: benchmark_install_rpath,
-    install: true,
-    install_tag: 'benchmarks',
-  )
-
-  if mpi_launcher_from_dependency and not wheel_carries_native_bundle
-    benchmark_launcher_program = find_program(
-      dependency_prefix / 'bin' / 'mpiexec',
-      dependency_prefix / 'bin' / 'mpirun',
-      required: true,
-    )
-    benchmark_mpi_launcher = benchmark_launcher_program.full_path()
-  elif mfem_runtime_prefix != ''
-    benchmark_mpi_launcher = mfem_runtime_prefix / 'bin' / 'mpiexec'
-  else
-    benchmark_launcher_program = find_program('mpiexec', 'mpirun', required: true)
-    benchmark_mpi_launcher = benchmark_launcher_program.full_path()
-  endif
-
-  benchmark_cases = ['cpu']
-  if mfem_features.get('ceed')
-    benchmark_cases += ['ceed-cpu']
-  endif
-  if mfem_has_openmp
-    benchmark_cases += ['omp']
-  endif
-  benchmark_cases += ['mpi']
-  if mfem_has_cuda
-    benchmark_cases += ['cuda']
-    if mfem_features.get('ceed')
-      benchmark_cases += ['ceed-cuda']
-    endif
-  endif
-
-  benchmark_environment = environment()
-  if (
-    mfem_runtime_prefix != '' and dependency_prefix != '' and
-    not wheel_carries_native_bundle
-  )
-    benchmark_environment.prepend('PATH', dependency_prefix / 'bin')
-    if host_machine.system() == 'darwin'
-      benchmark_environment.prepend('DYLD_LIBRARY_PATH', dependency_prefix / 'lib64')
-      benchmark_environment.prepend('DYLD_LIBRARY_PATH', dependency_prefix / 'lib')
-    elif not is_windows
-      benchmark_environment.prepend('LD_LIBRARY_PATH', dependency_prefix / 'lib64')
-      benchmark_environment.prepend('LD_LIBRARY_PATH', dependency_prefix / 'lib')
-    endif
-  endif
-  if mfem_runtime_prefix != ''
-    benchmark_environment.prepend('PATH', mfem_runtime_prefix / 'bin')
-    if host_machine.system() == 'darwin'
-      benchmark_environment.prepend('DYLD_LIBRARY_PATH', mfem_runtime_prefix / 'lib64')
-      benchmark_environment.prepend('DYLD_LIBRARY_PATH', mfem_runtime_prefix / 'lib')
-    elif not is_windows
-      benchmark_environment.prepend('LD_LIBRARY_PATH', mfem_runtime_prefix / 'lib64')
-      benchmark_environment.prepend('LD_LIBRARY_PATH', mfem_runtime_prefix / 'lib')
-    endif
-  endif
-
-  benchmark(
-    'mfem-backend-comparison',
-    python_build,
-    args: [
-      files('../tools/run_backend_benchmarks.py'),
-      '--executable', benchmark_executable,
-      '--launcher', benchmark_mpi_launcher,
-      '--cases', ','.join(benchmark_cases),
-      '--output-dir', meson.current_build_dir(),
-    ],
-    depends: benchmark_executable,
-    env: benchmark_environment,
-    timeout: 3600,
-  )
-endif

build-check/meson.build

@@ -15,6 +15,16 @@ if not cpp.links('''
   error('SERiF requires C++23 std::println support. On macOS, use -Dmacos_deployment_target=15.0 or newer with a recent Xcode toolchain.')
 endif
 
+if not cpp.compiles('''
+    #include <format>
+    int main() {
+        static_assert(__cpp_static_assert >= 202306L);
+        static_assert(false, std::format("C++26 static asserts {}", "supported"));
+        return 0;
+    }
+''', name: 'C++26 user defined static assert strings')
+   message('Note: SERiF uses some C++26 features specifically 202306L (user defined strings for static asserts), these may not be supported by your compiler and standard library. SERiF will fallback to simpler compile time error messages, but this may make debugging more difficult.')
+ endif
 cmake_program = find_program('cmake', required: true)
 # With meson-python, the generated native file pins this to the interpreter
 # building the wheel. For command-line builds, PATH controls the selection.

build-config/mfem/build_policy.hpp.in

@@ -0,0 +1,10 @@
+#pragma once
+// Meson MFEM policy: buildtype=@BUILD_TYPE@, optimization=@OPTIMIZATION@,
+// debug symbols=@DEBUG_SYMBOLS@, NDEBUG=@NDEBUG@.
+// This generated header tracks configuration changes for every MFEM consumer.
+#ifdef __cplusplus
+#include <mfem/config/config.hpp>
+#if defined(MFEM_DEBUG) != @MFEM_DEBUG@
+#error "MFEM_DEBUG does not match the Meson build; rebuild the MFEM bundle."
+#endif
+#endif

build-config/mfem/meson.build

@@ -327,6 +327,12 @@ endif
 system_mfem = disabler()
 system_mfem_dependencies = []
 mfem_provider = 'source bundle'
+# MFEM derives its debug-check macro from CMake's build type, independently
+# of debug symbols. Keep NDEBUG under Meson's existing assertion policy.
+mfem_debug_checks = get_option('buildtype') == 'debug'
+mfem_ndebug = get_option('b_ndebug') == 'true' or (
+  get_option('b_ndebug') == 'if-release' and get_option('buildtype') in ['release', 'plain']
+)
 
 if effective_allow_preinstalled
   system_candidate = dependency(
@@ -416,6 +422,16 @@ if effective_allow_preinstalled
     endif
 
     if system_compatible
+      if not mfem_debug_checks and not cpp.compiles(
+        '#include <mfem/config/config.hpp>\n' +
+        '#ifdef MFEM_DEBUG\n#error MFEM debug checks are enabled\n#endif\n' +
+        'int main(){return 0;}',
+        dependencies: system_candidate_dependencies,
+        name: 'system MFEM has debug checks disabled for this build type',
+      )
+        error('This build type requires MFEM without MFEM_DEBUG. Reconfigure with ' +
+          '-Dallow_preinstalled=false to build a matching MFEM, or select a release MFEM installation.')
+      endif
       system_mfem = system_candidate
       system_mfem_dependencies = system_candidate_dependencies
       mfem_provider = 'system'
@@ -552,6 +568,11 @@ else
     '--cc', cc_executable,
     '--cxx', cxx_executable,
     '--buildtype', get_option('buildtype'),
+    '--optimization', get_option('optimization'),
+    '--debug', get_option('debug') ? 'true' : 'false',
+    '--ndebug', mfem_ndebug ? 'true' : 'false',
+    '--compiler-syntax', cpp.get_argument_syntax(),
+    '--compiler-id', cpp.get_id(),
     '--jobs', get_option('jobs').to_string(),
     '--host-system', host_machine.system(),
     '--cross-build', meson.is_cross_build() ? 'true' : 'false',
@@ -656,6 +677,24 @@ else
   endif
 
   bundle_compile_args = ['-I' + mfem_runtime_prefix / 'include']
+  # The bundle directory is an order-only prerequisite. A configure-time header
+  # also invalidates consumer objects when MFEM's policy changes with otherwise
+  # identical compiler flags (e.g. debug -O2 -> debugoptimized).
+  mfem_policy = configuration_data()
+  mfem_policy.set('BUILD_TYPE', get_option('buildtype'))
+  mfem_policy.set('OPTIMIZATION', get_option('optimization'))
+  mfem_policy.set('DEBUG_SYMBOLS', get_option('debug').to_string())
+  mfem_policy.set('NDEBUG', mfem_ndebug.to_string())
+  mfem_policy.set('MFEM_DEBUG', mfem_debug_checks ? 1 : 0)
+  mfem_policy_header = configure_file(
+    input: 'build_policy.hpp.in', output: 'mfem_build_policy.hpp',
+    configuration: mfem_policy,
+  )
+  if cpp.get_argument_syntax() == 'msvc'
+    bundle_compile_args += ['/FI' + mfem_policy_header.full_path()]
+  else
+    bundle_compile_args += ['-include', mfem_policy_header.full_path()]
+  endif
   bundle_link_args = [
     '-L' + mfem_runtime_prefix / 'lib',
     '-L' + mfem_runtime_prefix / 'lib64',
@@ -760,4 +799,8 @@ if get_option('build_python') and get_option('python_install_native') and not ge
   error('A self-contained Python wheel requires -Dinstall_mfem=true so the native bundle is installed.')
 endif
 
-meson.override_dependency('mfem', mfem_dep)
+# A compatible system dependency is already registered by dependency().
+# Meson rejects overriding that resolved entry. Only register the source bundle.
+if mfem_provider != 'system'
+  meson.override_dependency('mfem', mfem_dep)
+endif

cross/wasm32.ini

@@ -1,21 +0,0 @@
-[binaries]
-c = 'emcc'
-cpp = 'em++'
-ar = 'emar'
-strip = 'emstrip'
-exe_wrapper = 'node'
-
-[built-in options]
-c_args = ['-O1']
-cpp_args = ['-O1', '-fwasm-exceptions']
-c_link_args = ['-O1', '-sALLOW_MEMORY_GROWTH=1']
-cpp_link_args = ['-O1', '-fwasm-exceptions', '-sALLOW_MEMORY_GROWTH=1']
-
-[host_machine]
-system = 'emscripten'
-cpu_family = 'wasm32'
-cpu = 'wasm32'
-endian = 'little'
-
-[properties]
-needs_exe_wrapper = true

docs/filters/custom_sections.c

@@ -0,0 +1,348 @@
+
+/*
+ * Doxygen documentation filter.
+ *
+ * Supports:
+ *   @requires
+ *   @contribution
+ *   @true_if
+ *
+ * We have this as a C not a python file to avoid spinning up the python interpreter separately for every file.
+ * We have this as a C and not a C++ file to avoid large binaries for something as simple as documentation generation and so we can more easily generate portable binaries.
+ */
+
+#include <ctype.h>
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+
+#define MAX_LINE_LENGTH 240
+
+typedef struct {
+    const char *name;
+    const char *title;
+    const char *cssClass;
+} Command;
+
+// To add additional custom sections to the documentation edit this, you may also want to edit
+// the doxygen-extra.css file to customize the class styling
+static const Command commands[] = {
+    {"@requires", "Requirements", "serif-requires"},
+    {"@contribution", "Equation Contributions", "serif-contribution"},
+    {"@true_if", "Compile Time True Type If", "serif-true-if"}
+};
+
+#define COMMAND_COUNT (sizeof(commands) / sizeof(commands[0]))
+
+typedef struct {
+    char *text;
+    size_t length;
+    size_t prefixLength;
+    size_t contentStart;
+    size_t contentLength;
+    size_t newlineStart;
+    int commandIndex;
+} Line;
+
+typedef struct {
+    Line *data;
+    size_t count;
+    size_t capacity;
+} LineArray;
+
+static void *checked_realloc(void *ptr, size_t size) {
+    void *result = realloc(ptr, size);
+    if (!result) {
+        fprintf(stderr, "ERROR: Out of memory.\n");
+        exit(EXIT_FAILURE);
+    }
+    return result;
+}
+
+/* Read a complete line, including its newline. */
+static int read_line(FILE *file, Line *line) {
+    size_t capacity = 256;
+    size_t length = 0;
+    char *buffer = checked_realloc(NULL, capacity);
+
+    int character;
+    while ((character = fgetc(file)) != EOF) {
+        if (length + 1 >= capacity) {
+            capacity *= 2;
+            buffer = checked_realloc(buffer, capacity);
+        }
+
+        buffer[length++] = (char)character;
+
+        if (character == '\n')
+            break;
+    }
+
+    if (length == 0) {
+        free(buffer);
+        return 0;
+    }
+
+    buffer[length] = '\0';
+
+    line->text = buffer;
+    line->length = length;
+    line->commandIndex = -1;
+    line->prefixLength = 0;
+    line->contentStart = 0;
+    line->contentLength = 0;
+
+    line->newlineStart = length;
+
+    while (line->newlineStart > 0 &&
+           (buffer[line->newlineStart - 1] == '\n' ||
+            buffer[line->newlineStart - 1] == '\r')) {
+        --line->newlineStart;
+    }
+
+    return 1;
+}
+
+/* Recognize the supported Doxygen commands. */
+static void parse_line(Line *line) {
+    const char *text = line->text;
+    const size_t end = line->newlineStart;
+    size_t pos = 0;
+
+    while (pos < end && (text[pos] == ' ' || text[pos] == '\t'))
+        ++pos;
+
+    if (pos == end || text[pos] != '*')
+        return;
+
+    ++pos;
+
+    /* Require whitespace after the comment marker. */
+    if (pos == end || (text[pos] != ' ' && text[pos] != '\t'))
+        return;
+
+    while (pos < end && (text[pos] == ' ' || text[pos] == '\t'))
+        ++pos;
+
+    for (size_t index = 0; index < COMMAND_COUNT; ++index) {
+        const Command *command = &commands[index];
+        size_t nameLength = strlen(command->name);
+
+        if (nameLength > end - pos)
+            continue;
+
+        if (strncmp(text + pos, command->name, nameLength) != 0)
+            continue;
+
+        size_t start = pos + nameLength;
+
+        if (start == end || !isspace((unsigned char)text[start]))
+            continue;
+
+        while (start < end && isspace((unsigned char)text[start]))
+            ++start;
+
+        size_t contentEnd = end;
+
+        while (contentEnd > start &&
+               isspace((unsigned char)text[contentEnd - 1])) {
+            --contentEnd;
+        }
+
+        if (start == contentEnd)
+            continue;
+
+        line->commandIndex = (int)index;
+        line->prefixLength = pos;
+        line->contentStart = start;
+        line->contentLength = contentEnd - start;
+        return;
+    }
+}
+
+static void append_line(LineArray *lines, Line line) {
+    if (lines->count == lines->capacity) {
+        size_t capacity = lines->capacity ? lines->capacity * 2 : 128;
+        lines->data = checked_realloc(
+            lines->data,
+            capacity * sizeof(Line)
+        );
+        lines->capacity = capacity;
+    }
+
+    lines->data[lines->count++] = line;
+}
+
+static size_t generated_length(
+    const Line *line,
+    const Command *command,
+    int first,
+    int last
+) {
+    size_t length = line->prefixLength +
+                    strlen("<li></li>") +
+                    line->contentLength;
+
+    if (first) {
+        length += strlen("<table class=\"\"><tr><th></th></tr><tr><td><ul>");
+        length += strlen(command->cssClass);
+        length += strlen(command->title);
+    }
+
+    if (last)
+        length += strlen("</ul></td></tr></table>");
+
+    return length;
+}
+
+static void write_original(const Line *line) {
+    fwrite(line->text, 1, line->length, stdout);
+}
+
+static void write_transformed(
+    const Line *line,
+    const Command *command,
+    int first,
+    int last
+) {
+    fwrite(line->text, 1, line->prefixLength, stdout);
+
+    if (first) {
+        printf(
+            "<table class=\"%s\"><tr><th>%s</th></tr><tr><td><ul>",
+            command->cssClass,
+            command->title
+        );
+    }
+
+    fputs("<li>", stdout);
+
+    fwrite(
+        line->text + line->contentStart,
+        1,
+        line->contentLength,
+        stdout
+    );
+
+    fputs("</li>", stdout);
+
+    if (last)
+        fputs("</ul></td></tr></table>", stdout);
+
+    fwrite(
+        line->text + line->newlineStart,
+        1,
+        line->length - line->newlineStart,
+        stdout
+    );
+}
+
+static void transform(const LineArray *lines) {
+    size_t index = 0;
+
+    while (index < lines->count) {
+        const Line *line = &lines->data[index];
+
+        if (line->commandIndex < 0) {
+            write_original(line);
+            ++index;
+            continue;
+        }
+
+        size_t start = index;
+        int commandIndex = line->commandIndex;
+
+        while (index < lines->count &&
+               lines->data[index].commandIndex == commandIndex) {
+            ++index;
+        }
+
+        size_t end = index;
+        const Command *command = &commands[commandIndex];
+
+        int overflow = 0;
+
+        for (size_t item = start; item < end; ++item) {
+            size_t length = generated_length(
+                &lines->data[item],
+                command,
+                item == start,
+                item == end - 1
+            );
+
+            if (length > MAX_LINE_LENGTH) {
+                overflow = 1;
+                break;
+            }
+        }
+
+        if (overflow) {
+            fprintf(
+                stderr,
+                "WARNING: %s group at input line %zu exceeds "
+                "%d characters after transformation; "
+                "original text retained.\n",
+                command->name,
+                start + 1,
+                MAX_LINE_LENGTH
+            );
+        }
+
+        for (size_t item = start; item < end; ++item) {
+            if (overflow) {
+                write_original(&lines->data[item]);
+            } else {
+                write_transformed(
+                    &lines->data[item],
+                    command,
+                    item == start,
+                    item == end - 1
+                );
+            }
+        }
+    }
+}
+
+int main(int argc, char **argv) {
+    // Validation
+    if (argc != 2) {
+        fprintf(stderr, "Usage: %s <source-file>\n", argv[0]);
+        return EXIT_FAILURE;
+    }
+
+    FILE *file = fopen(argv[1], "rb");
+
+    if (!file) {
+        fprintf(stderr, "ERROR: Cannot open '%s'.\n", argv[1]);
+        return EXIT_FAILURE;
+    }
+
+    // Parsing
+    LineArray lines = {0};
+    Line line;
+
+    while (read_line(file, &line)) {
+        parse_line(&line);
+        append_line(&lines, line);
+    }
+
+    // Clean up file handles
+    if (ferror(file)) {
+        fprintf(stderr, "ERROR: Failed reading '%s'.\n", argv[1]);
+        fclose(file);
+        return EXIT_FAILURE;
+    }
+
+    fclose(file);
+
+    // Transformation and output
+    transform(&lines);
+
+    // Cleanup memory
+    for (size_t index = 0; index < lines.count; ++index)
+        free(lines.data[index].text);
+
+    free(lines.data);
+
+    return ferror(stdout) ? EXIT_FAILURE : EXIT_SUCCESS;
+}

docs/filters/meson.build

@@ -0,0 +1,2 @@
+project('doxygen-custom-sections-serif', 'c', version : '1.0.0')
+executable('serif-custom-sections', 'custom_sections.c')

docs/html/_c_o_m_p_o_n_e_n_t_s_8md.html

@@ -0,0 +1,123 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>SERiF: src/include/serif/utils/serialize/COMPONENTS.md File Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<script type="text/javascript" src="clipboard.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="cookie.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<script type="text/x-mathjax-config">
+MathJax.Hub.Config({
+  extensions: ["tex2jax.js"],
+  jax: ["input/TeX","output/HTML-CSS"],
+});
+</script>
+<script type="text/javascript" async="async" src="https://cdn.jsdelivr.net/npm/mathjax@2/MathJax.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-extra.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">SERiF<span id="projectnumber">&#160;v0.0.1a</span>
+   </div>
+   <div id="projectbrief">Stellar Evolution and Rotation in Four Dimensions</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.13.2 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() { codefold.init(0); });
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search',true);
+  $(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
+  </div>
+  <div id="splitbar" style="-moz-user-select:none;" 
+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function(){initNavTree('_c_o_m_p_o_n_e_n_t_s_8md.html',''); initResizable(true); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">src/include/serif/utils/serialize/COMPONENTS.md File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="_c_o_m_p_o_n_e_n_t_s_8md.html">COMPONENTS.md</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+  </ul>
+</div>
+</body>
+</html>

docs/html/_formulas.aux

@@ -0,0 +1,2 @@
+\relax 
+\gdef \@abspage@last{15}

docs/html/_formulas.log

@@ -0,0 +1,161 @@
+This is pdfTeX, Version 3.141592653-2.6-1.40.27 (TeX Live 2025) (preloaded format=latex 2025.3.8)  30 SEP 2026 15:48
+entering extended mode
+ restricted \write18 enabled.
+ %&-line parsing enabled.
+**_formulas
+(./_formulas.tex
+LaTeX2e <2024-11-01> patch level 2
+L3 programming layer <2025-01-18>
+(/usr/local/texlive/2025/texmf-dist/tex/latex/base/article.cls
+Document Class: article 2024/06/29 v1.4n Standard LaTeX document class
+(/usr/local/texlive/2025/texmf-dist/tex/latex/base/size10.clo
+File: size10.clo 2024/06/29 v1.4n Standard LaTeX file (size option)
+)
+\c@part=\count196
+\c@section=\count197
+\c@subsection=\count198
+\c@subsubsection=\count199
+\c@paragraph=\count266
+\c@subparagraph=\count267
+\c@figure=\count268
+\c@table=\count269
+\abovecaptionskip=\skip49
+\belowcaptionskip=\skip50
+\bibindent=\dimen141
+) (/usr/local/texlive/2025/texmf-dist/tex/generic/iftex/iftex.sty
+Package: iftex 2024/12/12 v1.0g TeX engine tests
+) (/usr/local/texlive/2025/texmf-dist/tex/latex/base/ifthen.sty
+Package: ifthen 2024/03/16 v1.1e Standard LaTeX ifthen package (DPC)
+) (/usr/local/texlive/2025/texmf-dist/tex/latex/graphics/epsfig.sty
+Package: epsfig 2024/01/14 v1.7b (e)psfig emulation (SPQR)
+(/usr/local/texlive/2025/texmf-dist/tex/latex/graphics/graphicx.sty
+Package: graphicx 2021/09/16 v1.2d Enhanced LaTeX Graphics (DPC,SPQR)
+(/usr/local/texlive/2025/texmf-dist/tex/latex/graphics/keyval.sty
+Package: keyval 2022/05/29 v1.15 key=value parser (DPC)
+\KV@toks@=\toks17
+) (/usr/local/texlive/2025/texmf-dist/tex/latex/graphics/graphics.sty
+Package: graphics 2024/08/06 v1.4g Standard LaTeX Graphics (DPC,SPQR)
+(/usr/local/texlive/2025/texmf-dist/tex/latex/graphics/trig.sty
+Package: trig 2023/12/02 v1.11 sin cos tan (DPC)
+) (/usr/local/texlive/2025/texmf-dist/tex/latex/graphics-cfg/graphics.cfg
+File: graphics.cfg 2016/06/04 v1.11 sample graphics configuration
+)
+Package graphics Info: Driver file: dvips.def on input line 106.
+(/usr/local/texlive/2025/texmf-dist/tex/latex/graphics-def/dvips.def
+File: dvips.def 2022/09/22 v3.1e Graphics/color driver for dvips
+))
+\Gin@req@height=\dimen142
+\Gin@req@width=\dimen143
+)
+\epsfxsize=\dimen144
+\epsfysize=\dimen145
+) (/usr/local/texlive/2025/texmf-dist/tex/latex/base/inputenc.sty
+Package: inputenc 2024/02/08 v1.3d Input encoding file
+\inpenc@prehook=\toks18
+\inpenc@posthook=\toks19
+) (/usr/local/texlive/2025/texmf-dist/tex/latex/xcolor/xcolor.sty
+Package: xcolor 2024/09/29 v3.02 LaTeX color extensions (UK)
+(/usr/local/texlive/2025/texmf-dist/tex/latex/graphics-cfg/color.cfg
+File: color.cfg 2016/01/02 v1.6 sample color configuration
+)
+Package xcolor Info: Driver file: dvips.def on input line 274.
+(/usr/local/texlive/2025/texmf-dist/tex/latex/graphics/mathcolor.ltx)
+Package xcolor Info: Model `cmy' substituted by `cmy0' on input line 1349.
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+Package xcolor Info: Model `HTML' substituted by `rgb' on input line 1367.
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+Package xcolor Info: Model `tHsb' substituted by `hsb' on input line 1369.
+Package xcolor Info: Model `HSB' substituted by `hsb' on input line 1370.
+Package xcolor Info: Model `Gray' substituted by `gray' on input line 1371.
+Package xcolor Info: Model `wave' substituted by `hsb' on input line 1372.
+)
+(/usr/local/texlive/2025/texmf-dist/tex/latex/newunicodechar/newunicodechar.sty
+Package: newunicodechar 2018/04/08 v1.2 Defining Unicode characters
+) (/usr/local/texlive/2025/texmf-dist/tex/latex/l3backend/l3backend-dvips.def
+File: l3backend-dvips.def 2024-05-08 L3 backend support: dvips
+\l__pdf_internal_box=\box52
+\l__pdf_backend_content_box=\box53
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+<div class="textblock"><code>#include &lt;algorithm&gt;</code><br />
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+</div><table class="memberdecls">
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+  <div class="summary">
+<a href="#namespaces">Namespaces</a> &#124;
+<a href="#func-members">Functions</a>  </div>
+  <div class="headertitle"><div class="title">actions.cpp File Reference</div></div>
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+<div class="textblock"><code>#include &quot;<a class="el" href="nonfinite_8hpp.html">serif/utils/error/nonfinite.hpp</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="backend_2mfem_2operators_2actions_8hpp.html">serif/backend/mfem/operators/actions.hpp</a>&quot;</code><br />
+<code>#include &lt;algorithm&gt;</code><br />
+<code>#include &lt;utility&gt;</code><br />
+<code>#include &quot;<a class="el" href="backend_2mfem_2shared_2finite_8hpp.html">serif/backend/mfem/shared/finite.hpp</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="errors_8hpp.html">serif/utils/error/errors.hpp</a>&quot;</code><br />
+</div><div class="textblock"><div class="dynheader">
+Include dependency graph for actions.cpp:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="actions_8cpp__incl.svg" width="100%" height="600"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+</div>
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif.html">serif</a></td></tr>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1operators.html">serif::operators</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1operators_1_1backend.html">serif::operators::backend</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1operators_1_1backend_1_1mfem.html">serif::operators::backend::mfem</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:ad500ee5ad4ef471ae431b8c4dc3c6c53" id="r_ad500ee5ad4ef471ae431b8c4dc3c6c53"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classserif_1_1operators_1_1backend_1_1mfem_1_1_linearized_block.html">LinearizedBlock</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1operators_1_1backend_1_1mfem.html#ad500ee5ad4ef471ae431b8c4dc3c6c53">serif::operators::backend::mfem::linearized_action</a> (int rows, int columns, <a class="el" href="namespaceserif_1_1operators_1_1backend_1_1mfem.html#a3b3bf723bb9a0f99d88bd6fad6d6cee8">MatrixAction</a> action, <a class="el" href="namespaceserif_1_1operators_1_1backend_1_1mfem.html#a3b3bf723bb9a0f99d88bd6fad6d6cee8">MatrixAction</a> transpose)</td></tr>
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+<tr class="memdesc:a4c162ddfd57ca8b33e4f55537f0269ac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Apply an operator to several directions; ArrayMult for SERiF actions, otherwise one Mult per direction.  <br /></td></tr>
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+<tr class="memdesc:a17d55109fe81202a9dbff5f0cd921e5f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Transpose a linearized block without discarding efficient assembly and diagonal operations.  <br /></td></tr>
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+<tr class="memdesc:a33094e2a1e4dfb26dec4a1dfde0ed843"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compose linearized blocks in their written mathematical order.  <br /></td></tr>
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+<div class="textblock"><code>#include &lt;algorithm&gt;</code><br />
+<code>#include &lt;concepts&gt;</code><br />
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+<code>#include &quot;<a class="el" href="spaces_8hpp.html">serif/geometry/deformation/spaces.hpp</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="geometry_2deformation_2workspace_8hpp.html">serif/geometry/deformation/workspace.hpp</a>&quot;</code><br />
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+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="actions_8hpp__dep__incl.svg" width="100%" height="600"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1geometry_1_1deformation.html">serif::geometry::deformation</a></td></tr>
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+<a href="#concepts">Concepts</a>  </div>
+  <div class="headertitle"><div class="title">algebra.cpp File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><code>#include &lt;concepts&gt;</code><br />
+<code>#include &lt;span&gt;</code><br />
+<code>#include &lt;type_traits&gt;</code><br />
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+<a href="#namespaces">Namespaces</a> &#124;
+<a href="#func-members">Functions</a>  </div>
+  <div class="headertitle"><div class="title">all.hpp File Reference</div></div>
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+<p>File containing validate_schema, which selects the topology validators required by the schema type.  
+<a href="#details">More...</a></p>
+<div class="textblock"><code>#include &quot;<a class="el" href="discretization_2domain_2mesh_2topology_8hpp.html">serif/discretization/domain/mesh/topology.hpp</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="discretization_2domain_2schema_2concepts_8hpp.html">serif/discretization/domain/schema/concepts.hpp</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="results_8hpp.html">serif/discretization/domain/schema/validation/results.hpp</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="validator_8hpp.html">serif/discretization/domain/schema/validation/validator.hpp</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="schema_2validation_2boundary_8hpp.html">serif/discretization/domain/schema/validation/boundary.hpp</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="connected_8hpp.html">serif/discretization/domain/schema/validation/connected.hpp</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="inscribed_8hpp.html">serif/discretization/domain/schema/validation/inscribed.hpp</a>&quot;</code><br />
+</div><div class="textblock"><div class="dynheader">
+Include dependency graph for all.hpp:</div>
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+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="all_8hpp__incl.svg" width="100%" height="600"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
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+</div><div class="textblock"><div class="dynheader">
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+</div>
+</div><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
+Namespaces</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif.html">serif</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1discretization.html">serif::discretization</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1discretization_1_1domain.html">serif::discretization::domain</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1discretization_1_1domain_1_1schema.html">serif::discretization::domain::schema</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1discretization_1_1domain_1_1schema_1_1validation.html">serif::discretization::domain::schema::validation</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:ac7b1768feeba6a687afd25651fd43022" id="r_ac7b1768feeba6a687afd25651fd43022"><td class="memTemplParams" colspan="2">template&lt;IsSchema SchemaT&gt; </td></tr>
+<tr class="memitem:ac7b1768feeba6a687afd25651fd43022"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="structserif_1_1discretization_1_1domain_1_1schema_1_1validation_1_1_schema_validation_result.html">SchemaValidationResult</a>&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1discretization_1_1domain_1_1schema_1_1validation.html#ac7b1768feeba6a687afd25651fd43022">serif::discretization::domain::schema::validation::validate_schema</a> (const <a class="el" href="classserif_1_1discretization_1_1domain_1_1mesh_1_1_mesh_topology.html">mesh::MeshTopology</a> &amp;topology)</td></tr>
+<tr class="memdesc:ac7b1768feeba6a687afd25651fd43022"><td class="mdescLeft">&#160;</td><td class="mdescRight">Validate a mesh against a schema.  <br /></td></tr>
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+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>File containing validate_schema, which selects the topology validators required by the schema type. </p>
+<dl class="section author"><dt>Author</dt><dd>Emily M. Boudreaux </dd></dl>
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+<div class="textblock"><code>#include &quot;<a class="el" href="amg_8hpp.html">serif/backend/mfem/solver/preconditioner/inverse/amg.hpp</a>&quot;</code><br />
+<code>#include &lt;cmath&gt;</code><br />
+<code>#include &quot;<a class="el" href="backend_2mfem_2solver_2preconditioner_2inverse_2validation_8hpp.html">serif/backend/mfem/solver/preconditioner/inverse/validation.hpp</a>&quot;</code><br />
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif.html">serif</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1solver.html">serif::solver</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1solver_1_1preconditioner.html">serif::solver::preconditioner</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1solver_1_1preconditioner_1_1backend.html">serif::solver::preconditioner::backend</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1solver_1_1preconditioner_1_1backend_1_1mfem.html">serif::solver::preconditioner::backend::mfem</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
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+Functions</h2></td></tr>
+<tr class="memitem:a93b06736f1aa8006a04b04059080bd34" id="r_a93b06736f1aa8006a04b04059080bd34"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structserif_1_1solver_1_1preconditioner_1_1backend_1_1mfem_1_1_inverse.html">Inverse</a>, <a class="el" href="structserif_1_1solver_1_1preconditioner_1_1_failure.html">Failure</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1solver_1_1preconditioner_1_1backend_1_1mfem.html#a93b06736f1aa8006a04b04059080bd34">serif::solver::preconditioner::backend::mfem::try_amg_inverse</a> (std::shared_ptr&lt; const ::mfem::SparseMatrix &gt; matrix, const <a class="el" href="structserif_1_1solver_1_1preconditioner_1_1strategies_1_1inverse_1_1_fixed_a_m_g.html">strategies::inverse::FixedAMG</a> &amp;options={})</td></tr>
+<tr class="memdesc:a93b06736f1aa8006a04b04059080bd34"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prepare fixed-cycle BoomerAMG on this process; MPI must already be initialized and remains caller-owned.  <br /></td></tr>
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+<tr class="memdesc:a93b06736f1aa8006a04b04059080bd34"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prepare fixed-cycle BoomerAMG on this process; MPI must already be initialized and remains caller-owned.  <br /></td></tr>
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+  <div class="headertitle"><div class="title">angular_momentum.hpp File Reference</div></div>
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+<p>File containing the angular momentum constraint equation, which enforces a global constraint on the total angular momentum of a system.  
+<a href="#details">More...</a></p>
+<div class="textblock"><code>#include &lt;cmath&gt;</code><br />
+<code>#include &lt;string_view&gt;</code><br />
+<code>#include &quot;<a class="el" href="equations_2contributions_8hpp.html">serif/equations/contributions.hpp</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="point_8hpp.html">serif/equations/point.hpp</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="rigid__rotation_8hpp.html">serif/equations/rigid_rotation.hpp</a>&quot;</code><br />
+</div><div class="textblock"><div class="dynheader">
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+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Angular momentum constraint equation, which enforces a global constraint on the total angular momentum of a system.  <a href="classserif_1_1equations_1_1_angular_momentum_constraint.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif.html">serif</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1equations.html">serif::equations</a></td></tr>
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+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>File containing the angular momentum constraint equation, which enforces a global constraint on the total angular momentum of a system. </p>
+<dl class="section author"><dt>Author</dt><dd>Emily M. Boudreaux</dd></dl>
+<dl class="section note"><dt>Note</dt><dd>The angular momentum constraint is a global constraint that is enforced by integrating the point-wise contributions of the angular momentum density over the entire domain. The integrand is given by \( j_\parallel = \rho \Omega s^2\), where \(s^2 = |\hat{n} × (r − r_{c})|^2\) is the cylindrical radius squared, and \(\hat{n}\) is the unit rotation axis. The solver will integrate this over the domain and compare it to the target angular momentum to enforce the constraint.</dd></dl>
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+<li>The solver can choose to validate the angular momentum constraint by integrating the ::validation_integrand() over the domain and then passing this result to ::validate_integral(double result). Note that this is not specific to this equation but a feature of the overall system </li>
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+<code>#include &lt;system_error&gt;</code><br />
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+Include dependency graph for archive.cpp:</div>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1utils.html">serif::utils</a></td></tr>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceserif_1_1utils_1_1serialize.html">serif::utils::serialize</a></td></tr>
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+<tr class="memdesc:a7f4727c3a8f5b10ed46c149785bd8c82"><td class="mdescLeft">&#160;</td><td class="mdescRight">Insert a component while rejecting conflicting definitions of the same named object.  <br /></td></tr>
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