docs(docs): built docs

Note for now much of the docs is LLM written. This was done to save time and focus on code development. The docs have been LOOSLEY reviewed. However, the code itself has been either fully written by hand or fully reviewed. Therefore, the docs should at the moment be seen as a loose resource rather than authoratiative (and this is on top of the general ability for docs to drift)

docs/latex/inputs_8hpp.tex

@@ -0,0 +1,66 @@
+\doxysection{src/include/serif/geometry/deformation/backend/mfem/inputs.hpp File Reference}
+\hypertarget{inputs_8hpp}{}\label{inputs_8hpp}\index{src/include/serif/geometry/deformation/backend/mfem/inputs.hpp@{src/include/serif/geometry/deformation/backend/mfem/inputs.hpp}}
+{\ttfamily \#include $<$array$>$}\newline
+{\ttfamily \#include $<$vector$>$}\newline
+{\ttfamily \#include "{}mfem/fem/fespace.\+hpp"{}}\newline
+{\ttfamily \#include "{}serif/discretization/domain/schema/schemas.\+hpp"{}}\newline
+{\ttfamily \#include "{}serif/discretization/domain/schema/concepts.\+hpp"{}}\newline
+{\ttfamily \#include "{}serif/geometry/deformation/models.\+hpp"{}}\newline
+{\ttfamily \#include "{}serif/geometry/deformation/backend/mfem/detail/reference\+\_\+tracking.\+hpp"{}}\newline
+{\ttfamily \#include "{}serif/geometry/deformation/computations.\+hpp"{}}\newline
+{\ttfamily \#include "{}serif/utils/dependencies/dependency\+\_\+context.\+hpp"{}}\newline
+Include dependency graph for inputs.\+hpp\+:
+\nopagebreak
+\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[width=350pt]{inputs_8hpp__incl}
+\end{center}
+\end{figure}
+This graph shows which files directly or indirectly include this file\+:\nopagebreak
+\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[width=350pt]{inputs_8hpp__dep__incl}
+\end{center}
+\end{figure}
+\doxysubsubsection*{Classes}
+\begin{DoxyCompactItemize}
+\item 
+struct \mbox{\hyperlink{structserif_1_1geometry_1_1deformation_1_1backend_1_1mfem_1_1_reference_discretization}{serif\+::geometry\+::deformation\+::backend\+::mfem\+::\+Reference\+Discretization}}
+\begin{DoxyCompactList}\small\item\em Borrow the paired reference meshes; attributes retain their physical domain meaning. \end{DoxyCompactList}\item 
+struct \mbox{\hyperlink{structserif_1_1geometry_1_1deformation_1_1backend_1_1mfem_1_1_surface_discretization}{serif\+::geometry\+::deformation\+::backend\+::mfem\+::\+Surface\+Discretization}}
+\begin{DoxyCompactList}\small\item\em The surface selection needs only its scalar space and boundary label. \end{DoxyCompactList}\item 
+struct \mbox{\hyperlink{structserif_1_1geometry_1_1deformation_1_1backend_1_1mfem_1_1_deformation_value_tracking}{serif\+::geometry\+::deformation\+::backend\+::mfem\+::\+Deformation\+Value\+Tracking}}
+\begin{DoxyCompactList}\small\item\em Equal physical values remain reusable when a context is reconstructed. \end{DoxyCompactList}\item 
+struct \mbox{\hyperlink{structserif_1_1geometry_1_1deformation_1_1backend_1_1mfem_1_1_surface_discretization_tracking}{serif\+::geometry\+::deformation\+::backend\+::mfem\+::\+Surface\+Discretization\+Tracking}}
+\begin{DoxyCompactList}\small\item\em Track topology and labels once, independently of changes to physical coordinates. \end{DoxyCompactList}\item 
+struct \mbox{\hyperlink{structserif_1_1geometry_1_1deformation_1_1backend_1_1mfem_1_1_surface_discretization_tracking_1_1_snapshot}{serif\+::geometry\+::deformation\+::backend\+::mfem\+::\+Surface\+Discretization\+Tracking\+::\+Snapshot}}
+\item 
+struct \mbox{\hyperlink{structserif_1_1geometry_1_1deformation_1_1backend_1_1mfem_1_1_reference_discretization_tracking}{serif\+::geometry\+::deformation\+::backend\+::mfem\+::\+Reference\+Discretization\+Tracking}}
+\begin{DoxyCompactList}\small\item\em Logical interpolation depends on paired topology and logical coordinates, not physical coordinates. \end{DoxyCompactList}\item 
+struct \mbox{\hyperlink{structserif_1_1geometry_1_1deformation_1_1backend_1_1mfem_1_1_reference_discretization_tracking_1_1_snapshot}{serif\+::geometry\+::deformation\+::backend\+::mfem\+::\+Reference\+Discretization\+Tracking\+::\+Snapshot}}
+\end{DoxyCompactItemize}
+\doxysubsubsection*{Namespaces}
+\begin{DoxyCompactItemize}
+\item 
+namespace \mbox{\hyperlink{namespaceserif}{serif}}
+\item 
+namespace \mbox{\hyperlink{namespaceserif_1_1geometry}{serif\+::geometry}}
+\item 
+namespace \mbox{\hyperlink{namespaceserif_1_1geometry_1_1deformation}{serif\+::geometry\+::deformation}}
+\item 
+namespace \mbox{\hyperlink{namespaceserif_1_1geometry_1_1deformation_1_1backend}{serif\+::geometry\+::deformation\+::backend}}
+\item 
+namespace \mbox{\hyperlink{namespaceserif_1_1geometry_1_1deformation_1_1backend_1_1mfem}{serif\+::geometry\+::deformation\+::backend\+::mfem}}
+\end{DoxyCompactItemize}
+\doxysubsubsection*{Functions}
+\begin{DoxyCompactItemize}
+\item 
+{\footnotesize template$<$discretization\+::domain\+::schema\+::\+Is\+Schema Schema = discretization\+::domain\+::schema\+::\+Core\+Envelope\+Vacuum\+Domain\+Schema$>$ \newline
+requires (Schema\+::template contains\+\_\+domain$<$\mbox{\hyperlink{namespaceserif_1_1discretization_1_1domain_aa2fd687c5f7b8750fd6980f2a7a77652}{discretization\+::domain\+::\+Stellar\+Domains}}$>$() \&\& Schema\+::template contains\+\_\+domain$<$\mbox{\hyperlink{structserif_1_1discretization_1_1domain_1_1_vacuum_domain}{discretization\+::domain\+::\+Vacuum\+Domain}}$>$() \&\& Schema\+::template contains\+\_\+boundary$<$\mbox{\hyperlink{structserif_1_1discretization_1_1domain_1_1_stellar_surface_boundary}{discretization\+::domain\+::\+Stellar\+Surface\+Boundary}}$>$() \&\& Schema\+::template contains\+\_\+boundary$<$\mbox{\hyperlink{structserif_1_1discretization_1_1domain_1_1_infinity_surface_boundary}{discretization\+::domain\+::\+Infinity\+Surface\+Boundary}}$>$())}\\\mbox{\hyperlink{structserif_1_1geometry_1_1deformation_1_1backend_1_1mfem_1_1_reference_discretization}{Reference\+Discretization}} \mbox{\hyperlink{namespaceserif_1_1geometry_1_1deformation_1_1backend_1_1mfem_a4bda42409c67b56f9bc36ea69c7655ee}{serif\+::geometry\+::deformation\+::backend\+::mfem\+::deformation\+\_\+discretization}} (const \+::mfem\+::\+Finite\+Element\+Space \&scalar\+\_\+space, const \+::mfem\+::\+Finite\+Element\+Space \&displacement\+\_\+space, \+::mfem\+::\+Mesh \&logical\+\_\+mesh)
+\begin{DoxyCompactList}\small\item\em Resolve physical domain names through the schema rather than hard-\/coded MFEM attributes. \end{DoxyCompactList}\item 
+{\footnotesize template$<$typename Surface, typename Interior, typename Vacuum$>$ }\\auto \mbox{\hyperlink{namespaceserif_1_1geometry_1_1deformation_1_1backend_1_1mfem_a10e993d0c69b24df4bb3cd1a5ac12e9f}{serif\+::geometry\+::deformation\+::backend\+::mfem\+::make\+\_\+deformation\+\_\+inputs}} (const \mbox{\hyperlink{structserif_1_1geometry_1_1deformation_1_1_domain_deformation}{Domain\+Deformation}}$<$ Surface, Interior, Vacuum $>$ \&model, const \mbox{\hyperlink{structserif_1_1geometry_1_1deformation_1_1backend_1_1mfem_1_1_reference_discretization}{Reference\+Discretization}} \&discretization, const std\+::vector$<$ double $>$ \&coefficients)
+\begin{DoxyCompactList}\small\item\em Bind physical choices and shape coordinates without evaluating deformation. \end{DoxyCompactList}\item 
+{\footnotesize template$<$typename Surface, typename Interior, typename Vacuum$>$ }\\void \mbox{\hyperlink{namespaceserif_1_1geometry_1_1deformation_1_1backend_1_1mfem_a39054b92ed8aadf061d884cd92bccc5c}{serif\+::geometry\+::deformation\+::backend\+::mfem\+::make\+\_\+deformation\+\_\+inputs}} (const \mbox{\hyperlink{structserif_1_1geometry_1_1deformation_1_1_domain_deformation}{Domain\+Deformation}}$<$ Surface, Interior, Vacuum $>$ \&, const \mbox{\hyperlink{structserif_1_1geometry_1_1deformation_1_1backend_1_1mfem_1_1_reference_discretization}{Reference\+Discretization}} \&, const std\+::vector$<$ double $>$ \&\&)=delete
+\begin{DoxyCompactList}\small\item\em Reject temporary coefficient vectors whose storage would expire before preparation. \end{DoxyCompactList}\end{DoxyCompactItemize}