feat(libmeanfield): centrifugal + pressure

This commit is contained in:
2026-08-04 14:24:55 -04:00
parent 9bc4f2758a
commit dc912fd15e
115 changed files with 260058 additions and 163261 deletions

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@@ -1,53 +1,110 @@
module;
#include <array>
#include <mfem.hpp>
module mean_field;
import :mapping.coefficients;
namespace {
template <typename FormT>
const mfem::IntegrationRule &get_density_rule(
const mean_field::fem::FEM &fem,
const mfem::ElementTransformation &transformation,
const std::array<
int,
FormT::dynamicOrderCount> &dynamic_orders = {},
const mean_field::utils::DOMAINS domain =
mean_field::utils::DOMAINS::ALL
) {
using DensityField =
mean_field::field::Field<mean_field::field::Density>;
const mean_field::quadrature::Query query =
DensityField::make_query<FormT>(
mean_field::quadrature::QuadratureRole::diagnostic,
transformation.OrderW(), dynamic_orders, domain,
fem.has_mapping() ? mean_field::quadrature::MappingKind::general
: mean_field::quadrature::MappingKind::none
);
return *fem.quadratureFactory
->get(query, transformation.GetGeometryType())
.integration_rule;
}
} // namespace
namespace mean_field::analysis {
double domain_integrate_grid_function(const fem::FEM &fem, const mfem::GridFunction &gf, utils::DOMAINS domain, mapping::COORDINATE_SPACE coord_space) {
mfem::LinearForm lf(fem.H1_fes.get());
double domain_integrate_grid_function(
const fem::FEM &fem,
const mfem::GridFunction &gf,
utils::DOMAINS domain,
mapping::COORDINATE_SPACE coord_space
) {
mfem::LinearForm lf(fem.densityFes.get());
mfem::GridFunctionCoefficient gf_c(&gf);
double local_integral;
mfem::Array<int> elem_markers;
populate_element_mask(fem.mesh.get(), domain, elem_markers);
const mfem::ElementTransformation &representative_transformation =
*fem.mesh->GetElementTransformation(0);
const mfem::IntegrationRule &integration_rule =
get_density_rule<field::Density::Form::MassConservation>(
fem, representative_transformation, {}, domain
);
if (fem.has_mapping() && coord_space == mapping::COORDINATE_SPACE::PHYSICAL) {
if (fem.has_mapping() &&
coord_space == mapping::COORDINATE_SPACE::PHYSICAL) {
mapping::MappedScalarCoefficient mapped_gf_c(*fem.mapping, gf_c);
// ReSharper disable once CppDFAMemoryLeak // Disabled because MFEM takes ownership so memory is not leaked
// ReSharper disable once CppDFAMemoryLeak // Disabled because MFEM
// takes ownership so memory is not leaked
auto *lf_integrator = new mfem::DomainLFIntegrator(mapped_gf_c);
lf_integrator->SetIntRule(fem.int_rule.get());
lf_integrator->SetIntRule(&integration_rule);
lf.AddDomainIntegrator(lf_integrator, elem_markers);
lf.Assemble();
local_integral = lf.Sum();
} else {
if (coord_space == mapping::COORDINATE_SPACE::PHYSICAL) {
MFEM_ABORT(
"Physical evaluation mode requested but no mapping provided. Check domain bounds and mapping setup.");
"Physical evaluation mode requested but no mapping "
"provided. Check "
"domain bounds and mapping setup."
);
}
lf.AddDomainIntegrator(new mfem::DomainLFIntegrator(gf_c), elem_markers);
auto *lf_integrator = new mfem::DomainLFIntegrator(gf_c);
lf_integrator->SetIntRule(&integration_rule);
lf.AddDomainIntegrator(lf_integrator, elem_markers);
lf.Assemble();
local_integral = lf.Sum();
}
double global_integral = 0.0;
MPI_Allreduce(&local_integral, &global_integral, 1, MPI_DOUBLE, MPI_SUM, fem.H1_fes->GetComm());
MPI_Allreduce(
&local_integral, &global_integral, 1, MPI_DOUBLE, MPI_SUM,
fem.mesh->GetComm()
);
return global_integral;
}
mfem::Vector get_com(const fem::FEM &fem, const mfem::GridFunction &rho) {
mfem::Vector get_com(
const fem::FEM &fem,
const mfem::GridFunction &rho
) {
const int dim = fem.mesh->Dimension();
mfem::Vector local_com(dim);
local_com = 0.0;
local_com = 0.0;
double local_mass = 0.0;
for (int i = 0; i < fem.H1_fes->GetNE(); ++i) {
if (fem.mesh->GetAttribute(i) == 3) continue;
mfem::ElementTransformation *trans = fem.H1_fes->GetElementTransformation(i);
const mfem::IntegrationRule &ir = *fem.int_rule;
for (int i = 0; i < fem.mesh->GetNE(); ++i) {
if (fem.mesh->GetAttribute(i) == 3)
continue;
mfem::ElementTransformation *trans =
fem.mesh->GetElementTransformation(i);
const mfem::IntegrationRule &ir =
get_density_rule<field::Density::Form::CenterOfMass>(
fem, *trans, std::array<int, 1>{1}, utils::DOMAINS::STELLAR
);
for (int j = 0; j < ir.GetNPoints(); ++j) {
const mfem::IntegrationPoint &ip = ir.IntPoint(j);
@@ -77,11 +134,14 @@ namespace mean_field::analysis {
double global_mass = 0.0;
mfem::Vector global_com(dim);
MPI_Comm comm = fem.H1_fes->GetComm();
MPI_Comm comm = fem.mesh->GetComm();
MPI_Allreduce(&local_mass, &global_mass, 1, MPI_DOUBLE, MPI_SUM, comm);
MPI_Allreduce(local_com.GetData(), global_com.GetData(), dim, MPI_DOUBLE, MPI_SUM, comm);
MPI_Allreduce(
local_com.GetData(), global_com.GetData(), dim, MPI_DOUBLE, MPI_SUM,
comm
);
if (global_mass > 1e-18) {
global_com /= global_mass;
@@ -92,19 +152,32 @@ namespace mean_field::analysis {
return global_com;
}
void conserve_mass(const fem::FEM &fem, mfem::GridFunction &rho, const double target_mass) {
if (const double current_mass = domain_integrate_grid_function(fem, rho, utils::DOMAINS::STELLAR); current_mass > 1e-15)
void conserve_mass(
const fem::FEM &fem,
mfem::GridFunction &rho,
const double target_mass
) {
if (const double current_mass = domain_integrate_grid_function(
fem, rho, utils::DOMAINS::STELLAR
);
current_mass > 1e-15)
rho *= (target_mass / current_mass);
}
double get_moment_of_inertia(const fem::FEM &fem, const mfem::GridFunction &rho) {
double get_moment_of_inertia(
const fem::FEM &fem,
const mfem::GridFunction &rho
) {
auto s2_func = [](const mfem::Vector &x) {
return std::pow(x(0), 2) + std::pow(x(1), 2);
};
std::unique_ptr<mfem::Coefficient> s2_coeff;
if (fem.has_mapping()) {
s2_coeff = std::make_unique<mapping::PhysicalPositionFunctionCoefficient>(*fem.mapping, s2_func);
s2_coeff =
std::make_unique<mapping::PhysicalPositionFunctionCoefficient>(
*fem.mapping, s2_func
);
} else {
s2_coeff = std::make_unique<mfem::FunctionCoefficient>(s2_func);
}
@@ -112,53 +185,82 @@ namespace mean_field::analysis {
mfem::GridFunctionCoefficient rho_coeff(&rho);
mfem::ProductCoefficient I_integrand(rho_coeff, *s2_coeff);
mfem::LinearForm I_lf(fem.H1_fes.get());
mfem::LinearForm I_lf(fem.densityFes.get());
const mfem::ElementTransformation &representative_transformation =
*fem.mesh->GetElementTransformation(0);
const mfem::IntegrationRule &integration_rule =
get_density_rule<field::Density::Form::Quadrupole>(
fem, representative_transformation, std::array<int, 1>{2},
utils::DOMAINS::STELLAR
);
mfem::Array<int> stellar_markers;
populate_element_mask(
fem.mesh.get(), utils::DOMAINS::STELLAR, stellar_markers
);
double I = 0.0;
// TODO: Need to filter here to just the stellar domain and also update the IntRule
double local_I = 0.0;
if (fem.has_mapping()) {
mapping::MappedScalarCoefficient mapped_integrand(*fem.mapping, I_integrand);
I_lf.AddDomainIntegrator(new mfem::DomainLFIntegrator(mapped_integrand));
mapping::MappedScalarCoefficient mapped_integrand(
*fem.mapping, I_integrand
);
auto *integrator = new mfem::DomainLFIntegrator(mapped_integrand);
integrator->SetIntRule(&integration_rule);
I_lf.AddDomainIntegrator(integrator, stellar_markers);
I_lf.Assemble();
I = I_lf.Sum();
local_I = I_lf.Sum();
} else {
I_lf.AddDomainIntegrator(new mfem::DomainLFIntegrator(I_integrand));
auto *integrator = new mfem::DomainLFIntegrator(I_integrand);
integrator->SetIntRule(&integration_rule);
I_lf.AddDomainIntegrator(integrator, stellar_markers);
I_lf.Assemble();
I = I_lf.Sum();
local_I = I_lf.Sum();
}
return I;
double global_I = 0.0;
MPI_Allreduce(
&local_I, &global_I, 1, MPI_DOUBLE, MPI_SUM, fem.mesh->GetComm()
);
return global_I;
}
double get_mesh_volume(
const fem::FEM& fem,
const fem::FEM &fem,
const mapping::COORDINATE_SPACE coordinate_space,
const utils::DOMAINS domain
) {
mfem::ParMesh &mesh = *fem.mesh;
const mapping::DomainMapper &map = *fem.mapping;
const mfem::IntegrationRule &ir = *fem.int_rule;
const bool physical =
(coordinate_space == mapping::COORDINATE_SPACE::PHYSICAL);
if (physical && !fem.has_mapping()) {
MFEM_ABORT(
"Physical volume requested but no domain mapping is available."
);
}
double local_volume = 0.0;
for (int e = 0; e < mesh.GetNE(); ++e) {
const int attr = mesh.GetAttribute(e);
switch (domain) {
case utils::DOMAINS::ALL:
break;
case utils::DOMAINS::STELLAR:
if (attr == 3) continue;
break;
case utils::DOMAINS::VACUUM:
if (attr != 3) continue;
break;
default:
MFEM_ABORT("Unsupported domain type for volume computation.");
case utils::DOMAINS::ALL:
break;
case utils::DOMAINS::STELLAR:
if (attr == 3)
continue;
break;
case utils::DOMAINS::VACUUM:
if (attr != 3)
continue;
break;
default:
MFEM_ABORT("Unsupported domain type for volume computation.");
}
mfem::ElementTransformation *T = mesh.GetElementTransformation(e);
const mfem::IntegrationRule &ir =
get_density_rule<field::Density::Form::MassConservation>(
fem, *T, {}, domain
);
for (int q = 0; q < ir.GetNPoints(); ++q) {
const mfem::IntegrationPoint &ip = ir.IntPoint(q);
@@ -167,7 +269,7 @@ namespace mean_field::analysis {
double dV = ip.weight * T->Weight();
if (physical) {
dV *= std::fabs(map.ComputeDetJ(*T, ip));
dV *= std::fabs(fem.mapping->ComputeDetJ(*T, ip));
}
local_volume += dV;
@@ -175,8 +277,10 @@ namespace mean_field::analysis {
}
double global_volume = 0.0;
MPI_Allreduce(&local_volume, &global_volume, 1, MPI_DOUBLE, MPI_SUM,
mesh.GetComm());
MPI_Allreduce(
&local_volume, &global_volume, 1, MPI_DOUBLE, MPI_SUM,
mesh.GetComm()
);
return global_volume;
}
}
} // namespace mean_field::analysis

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@@ -1,190 +1,560 @@
module;
#include <string>
#include <algorithm>
#include <cmath>
#include <expected>
#include <limits>
#include <memory>
#include <stdexcept>
#include <string>
#include <utility>
#include <mfem.hpp>
#include <stroid/stroid.h>
module mean_field;
import :boundary.contexts;
import :field.mfem;
import :mapping.coefficients;
import :utils.misc;
import :utils.user;
namespace mean_field::fem {
FEM setup_fem(const std::string &filename, const utils::Args &args, const int extra_refine) {
FEM setup_fem(
const std::string &filename,
const utils::Args &args,
const int extraRefine
) {
FEM fem;
//==================================================================
// Section 1: Mesh and FE Space Setup
//==================================================================
fem.smesh = stroid::IO::LoadStroidMesh(filename).value();
if (extra_refine > 0) {
stroid::refinement::UniformRefinement(fem.smesh, extra_refine);
using GravityPotential = field::Gravity::Potential;
using GravityFlux = field::Gravity::Flux;
using DisplacementVector = field::Displacement::Vector;
using DensityScalar = field::Density::Scalar;
using EnthalpyScalar = field::Enthalpy::Scalar;
// =====================================================================
// Section 1: Mesh construction
// =====================================================================
fem.smesh = stroid::IO::LoadStroidMesh(filename).value();
if (extraRefine > 0) {
stroid::refinement::UniformRefinement(fem.smesh, extraRefine);
}
fem.mesh = std::make_unique<mfem::ParMesh>(MPI_COMM_WORLD, *fem.smesh.mesh);
int mpiSize = 1;
MPI_Comm_size(MPI_COMM_WORLD, &mpiSize);
const std::unique_ptr<int[]> meshPartitioning(
fem.smesh.mesh->GeneratePartitioning(mpiSize, 1)
);
fem.mesh = std::make_unique<mfem::ParMesh>(
MPI_COMM_WORLD, *fem.smesh.mesh, meshPartitioning.get(), 1
);
fem.mesh->EnsureNodes();
const int geom_order = utils::get_mesh_order(*fem.mesh);
const int dim = fem.mesh->Dimension();
// =====================================================================
// Section 2: Exterior compactification coordinate
// =====================================================================
const int v_order = 2;
const int rho_order = 2;
const int p = rho_order ;
if (fem.smesh.exterior_coordinate == nullptr) {
throw std::runtime_error("Exterior coordinate not set.");
}
const int cb_type = mfem::BasisType::GaussLobatto;
const int ob_type = mfem::BasisType::IntegratedGLL;
if (fem.smesh.exterior_coordinate->space == nullptr) {
throw std::runtime_error("Space for exterior coordinate not set.");
}
fem.RT_fec = std::make_unique<mfem::RT_FECollection>(p, dim, cb_type, ob_type);
fem.RT_fes = std::make_unique<mfem::ParFiniteElementSpace>(fem.mesh.get(), fem.RT_fec.get());
if (fem.smesh.exterior_coordinate->values == nullptr) {
throw std::runtime_error("Values for exterior coordinate not set.");
}
fem.H1_fec = std::make_unique<mfem::H1_FECollection>(v_order, dim);
fem.L2_fec = std::make_unique<mfem::L2_FECollection>(rho_order, dim);
const mfem::FiniteElementSpace &serialCoordinateSpace =
*fem.smesh.exterior_coordinate->space;
// Gravity (Scalar H1) and Velocity (Vector H1)
fem.H1_fes = std::make_unique<mfem::ParFiniteElementSpace>(fem.mesh.get(), fem.H1_fec.get());
fem.Vec_H1_fes = std::make_unique<mfem::ParFiniteElementSpace>(fem.mesh.get(), fem.H1_fec.get(), dim,
mfem::Ordering::byNODES);
const mfem::GridFunction &serialCoordinate =
*fem.smesh.exterior_coordinate->values;
// Density & Pressure (Scalar Discontinuous L2)
fem.L2_fes = std::make_unique<mfem::ParFiniteElementSpace>(fem.mesh.get(), fem.L2_fec.get());
if (serialCoordinate.FESpace() != &serialCoordinateSpace) {
throw std::runtime_error(
"Exterior coordinate values are not associated with the "
"supplied finite-element space."
);
}
//==================================================================
// Section 2: Domain Mapping
//==================================================================
auto [r_star_ref, r_inf_ref] = utils::discover_bounds(fem.mesh.get(), 3)
.or_else([](const boundary::BoundsError &err)-> std::expected<boundary::Bounds, boundary::BoundsError> {
throw std::runtime_error("Unable to determine vacuum domain reference boundary...");
}).value();
if (serialCoordinateSpace.GetMesh() != fem.smesh.mesh.get()) {
throw std::runtime_error(
"Exterior coordinate space is not associated with the "
"loaded STROID mesh."
);
}
fem.mapping = std::make_unique<mapping::DomainMapper>(r_star_ref, r_inf_ref);
if (serialCoordinateSpace.GetVDim() != 1) {
throw std::runtime_error(
"Exterior coordinate must be a scalar field."
);
}
//==================================================================
// Section 3: Multi-physics Block-offsets
//==================================================================
fem.block_true_offsets.SetSize(3);
fem.block_true_offsets[0] = 0;
fem.block_true_offsets[1] = fem.Vec_H1_fes->GetTrueVSize();
fem.block_true_offsets[2] = fem.block_true_offsets[1] + fem.L2_fes->GetTrueVSize();
if (serialCoordinate.Size() != serialCoordinateSpace.GetVSize()) {
throw std::runtime_error(
"Exterior coordinate value count does not match its "
"finite-element space."
);
}
fem.gravity_block_true_offsets.SetSize(3);
fem.gravity_block_true_offsets[0] = 0;
fem.gravity_block_true_offsets[1] = fem.RT_fes->GetTrueVSize();
fem.gravity_block_true_offsets[2] = fem.gravity_block_true_offsets[1] + fem.L2_fes->GetTrueVSize();
const int compactificationOrder =
serialCoordinateSpace.GetMaxElementOrder();
//==================================================================
// Section 4: Multipole BC setup.
//==================================================================
fem.com.SetSize(dim);
const int dimension = fem.mesh->Dimension();
fem.compactificationFec = std::make_unique<mfem::H1_FECollection>(
compactificationOrder, dimension
);
fem.compactificationFes = std::make_unique<mfem::ParFiniteElementSpace>(
fem.mesh.get(), fem.compactificationFec.get()
);
mfem::ParGridFunction distributedCoordinate(
fem.mesh.get(), &serialCoordinate, meshPartitioning.get()
);
if (distributedCoordinate.Size() !=
fem.compactificationFes->GetVSize()) {
throw std::runtime_error(
"Distributed exterior coordinate does not match the "
"constructed parallel finite-element space."
);
}
fem.compactificationCoordinate =
std::make_unique<mfem::ParGridFunction>(
fem.compactificationFes.get()
);
*fem.compactificationCoordinate = distributedCoordinate;
double localMinimum = std::numeric_limits<double>::infinity();
double localMaximum = -std::numeric_limits<double>::infinity();
for (int index = 0; index < fem.compactificationCoordinate->Size();
++index) {
const double value = (*fem.compactificationCoordinate)(index);
if (!std::isfinite(value)) {
throw std::runtime_error(
"Exterior coordinate contains a non-finite value."
);
}
localMinimum = std::min(localMinimum, value);
localMaximum = std::max(localMaximum, value);
}
double globalMinimum = 0.0;
double globalMaximum = 0.0;
MPI_Allreduce(
&localMinimum, &globalMinimum, 1, MPI_DOUBLE, MPI_MIN,
MPI_COMM_WORLD
);
MPI_Allreduce(
&localMaximum, &globalMaximum, 1, MPI_DOUBLE, MPI_MAX,
MPI_COMM_WORLD
);
constexpr double coordinateTolerance = 1.0e-12;
if (globalMinimum < -coordinateTolerance ||
globalMaximum > 1.0 + coordinateTolerance) {
throw std::runtime_error(
"Exterior coordinate lies outside the expected "
"interval [0, 1]."
);
}
// =====================================================================
// Section 3: Compile-time field realization
// =====================================================================
// ---------------------------------------------------------------------
// Gravity potential: scalar L2
// ---------------------------------------------------------------------
fem.gravityPotentialFec =
GravityField::make_fec<GravityPotential>(dimension);
fem.gravityPotentialFes = GravityField::make_fespace<GravityPotential>(
*fem.mesh, *fem.gravityPotentialFec
);
// ---------------------------------------------------------------------
// Gravity flux: H(div)/RT. Basis choices are encoded by field.mfem.
// ---------------------------------------------------------------------
fem.gravityFluxFec = GravityField::make_fec<GravityFlux>(dimension);
fem.gravityFluxFes = GravityField::make_fespace<GravityFlux>(
*fem.mesh, *fem.gravityFluxFec
);
// ---------------------------------------------------------------------
// Displacement: vector H1. Ordering is encoded by field.mfem.
// ---------------------------------------------------------------------
fem.displacementFec =
DisplacementField::make_fec<DisplacementVector>(dimension);
fem.displacementFes =
DisplacementField::make_fespace<DisplacementVector>(
*fem.mesh, *fem.displacementFec
);
fem.displacement =
std::make_unique<mfem::ParGridFunction>(fem.displacementFes.get());
*fem.displacement = 0.0;
// ---------------------------------------------------------------------
// Density: scalar discontinuous L2
// ---------------------------------------------------------------------
fem.densityFec = DensityField::make_fec<DensityScalar>(dimension);
fem.densityFes = DensityField::make_fespace<DensityScalar>(
*fem.mesh, *fem.densityFec
);
// ---------------------------------------------------------------------
// Specific enthalpy: scalar continuous H1
// ---------------------------------------------------------------------
fem.enthalpyFec = EnthalpyField::make_fec<EnthalpyScalar>(dimension);
fem.enthalpyFes = EnthalpyField::make_fespace<EnthalpyScalar>(
*fem.mesh, *fem.enthalpyFec
);
// =====================================================================
// Section 4: Domain mapping
// =====================================================================
auto [stellarRadiusReference, infinityRadiusReference] =
utils::discover_bounds(fem.mesh.get(), 3)
.or_else(
[](const boundary::BoundsError &)
-> std::expected<
boundary::Bounds, boundary::BoundsError> {
throw std::runtime_error(
"Unable to determine vacuum-domain reference "
"boundaries."
);
}
)
.value();
fem.mapping = std::make_unique<mapping::DomainMapper>(
*fem.displacement, stellarRadiusReference, infinityRadiusReference
);
// =====================================================================
// Section 5: Block offsets
//
// Legacy layouts only. New coupled operators use :utils.blocks forms.
//
// Main system: [Displacement | Density]
// Gravity system: [Flux | Potential]
// =====================================================================
fem.blockTrueOffsets.SetSize(3);
fem.blockTrueOffsets[0] = 0;
fem.blockTrueOffsets[1] = fem.displacementFes->GetTrueVSize();
fem.blockTrueOffsets[2] =
fem.blockTrueOffsets[1] + fem.densityFes->GetTrueVSize();
fem.gravityBlockTrueOffsets.SetSize(3);
fem.gravityBlockTrueOffsets[0] = 0;
fem.gravityBlockTrueOffsets[1] = fem.gravityFluxFes->GetTrueVSize();
fem.gravityBlockTrueOffsets[2] =
fem.gravityBlockTrueOffsets[1] +
fem.gravityPotentialFes->GetTrueVSize();
// =====================================================================
// Section 6: Multipole data
// =====================================================================
fem.com.SetSize(dimension);
fem.com = 0.0;
fem.Q.SetSize(dim, dim);
fem.Q.SetSize(dimension, dimension);
fem.Q = 0.0;
//==================================================================
// Section 5: Integration Rules
//==================================================================
MFEM_ASSERT(fem.mesh->GetElementGeometry(0) == mfem::Geometry::CUBE,
"Currently only hexahedral meshes are supported");
const int element_order = fem.H1_fes->GetMaxElementOrder();
fem.int_order = 2 * element_order + geom_order - 2 + args.quad_boost;
// =====================================================================
// Section 7: Essential boundaries and domain masks
// =====================================================================
fem.int_rule = std::make_unique<mfem::IntegrationRule>(mfem::IntRules.Get(mfem::Geometry::CUBE, fem.int_order));
fem.essentialDisplacementTdofs.SetSize(0);
//==================================================================
// Section 6: Essential Boundaries & Domain Masks
//==================================================================
fem.ess_v_tdofs.SetSize(0);
populate_element_mask(
fem.mesh.get(), utils::DOMAINS::STELLAR,
fem.gravityContext.stellar_mask
);
populate_element_mask(fem.mesh.get(), utils::DOMAINS::STELLAR, fem.gravity_context.stellar_mask);
const int boundaryAttributeCount = fem.mesh->bdr_attributes.Max();
const int n_bdr_attrs = fem.mesh->bdr_attributes.Max();
fem.boundary_context.inf_bounds.SetSize(n_bdr_attrs);
fem.boundary_context.stellar_bounds.SetSize(n_bdr_attrs);
fem.boundaryContext.inf_bounds.SetSize(boundaryAttributeCount);
fem.boundary_context.inf_bounds = 0;
fem.boundary_context.stellar_bounds = 0;
fem.boundaryContext.stellar_bounds.SetSize(boundaryAttributeCount);
fem.boundary_context.inf_bounds[static_cast<int>(boundary::Boundaries::INF_SURFACE) - 1] = 1;
fem.boundary_context.stellar_bounds[static_cast<int>(boundary::Boundaries::STELLAR_SURFACE) - 1] = 1;
fem.boundaryContext.inf_bounds = 0;
fem.boundaryContext.stellar_bounds = 0;
//==================================================================
// Section 7: Gravity Context Setup
//==================================================================
fem.gravity_context.minres = std::make_unique<mfem::MINRESSolver>(fem.mesh->GetComm());
fem.gravity_context.minres->SetRelTol(1e-12);
fem.gravity_context.minres->SetAbsTol(1e-12);
fem.gravity_context.minres->SetMaxIter(1000);
fem.gravity_context.minres->SetPrintLevel(0);
fem.boundaryContext.inf_bounds
[static_cast<int>(boundary::Boundaries::INF_SURFACE) - 1] = 1;
fem.gravity_context.prec_Phi = std::make_unique<mfem::HypreBoomerAMG>();
fem.gravity_context.prec_Phi->SetPrintLevel(0);
fem.boundaryContext.stellar_bounds
[static_cast<int>(boundary::Boundaries::STELLAR_SURFACE) - 1] = 1;
fem.gravity_context.block_prec = std::make_unique<mfem::BlockDiagonalPreconditioner>(fem.gravity_block_true_offsets);
// =====================================================================
// Section 8: Gravity solver context
// =====================================================================
fem.gravityContext.minres =
std::make_unique<mfem::MINRESSolver>(fem.mesh->GetComm());
fem.gravityContext.minres->SetRelTol(1.0e-12);
fem.gravityContext.minres->SetAbsTol(1.0e-12);
fem.gravityContext.minres->SetMaxIter(1000);
fem.gravityContext.minres->SetPrintLevel(0);
fem.gravityContext.prec_Phi = std::make_unique<mfem::HypreBoomerAMG>();
fem.gravityContext.prec_Phi->SetPrintLevel(0);
fem.gravityContext.block_prec =
std::make_unique<mfem::BlockDiagonalPreconditioner>(
fem.gravityBlockTrueOffsets
);
fem.gravityContext.minres->SetPreconditioner(
*fem.gravityContext.block_prec
);
// =====================================================================
// Section 9: Vacuum true-DOF masks
// =====================================================================
fem.gravity_context.minres->SetPreconditioner(*fem.gravity_context.block_prec);
//=========================================================
// Section 10: Set All vacuum elements true degrees of freedom
//=========================================================
{
mfem::Array<int> vacuum_mask;
utils::populate_element_mask(fem.mesh.get(), utils::DOMAINS::VACUUM, vacuum_mask);
mfem::Array<int> vacuumMask;
utils::populate_domain_tdofs(fem.Vec_H1_fes.get(), vacuum_mask, fem.vacuum_tdof_v);
utils::populate_domain_tdofs(fem.L2_fes.get(), vacuum_mask, fem.vacuum_tdof_rho);
utils::populate_element_mask(
fem.mesh.get(), utils::DOMAINS::VACUUM, vacuumMask
);
utils::populate_domain_tdofs(
fem.displacementFes.get(), vacuumMask,
fem.vacuumDisplacementTdofs
);
utils::populate_domain_tdofs(
fem.densityFes.get(), vacuumMask, fem.vacuumDensityTdofs
);
utils::populate_domain_tdofs(
fem.enthalpyFes.get(), vacuumMask, fem.vacuumEnthalpyTdofs
);
}
const quadrature::QuadratureOptions& quadrature_options = args.quadrature;
// =====================================================================
// Section 10: Quadrature policy
// =====================================================================
if (quadrature_options.validation.reject_negative_boosts && quadrature_options.global_boost < 0) {
throw std::invalid_argument("Global quadrature boost cannot be negative.");
const quadrature::QuadratureOptions &quadratureOptions =
args.quadrature;
if (quadratureOptions.validation.reject_negative_boosts &&
quadratureOptions.global_boost < 0) {
throw std::invalid_argument(
"Global quadrature boost cannot be negative."
);
}
quadrature::RuleSet quadrature_rule_set = quadrature::make_rule_set(quadrature_options.mode, quadrature_options.global_boost);
quadrature::RuleSet quadratureRuleSet = quadrature::make_rule_set(
quadratureOptions.mode, quadratureOptions.global_boost
);
if (quadrature_options.fallback_fixed_order.has_value()) {
if (*quadrature_options.fallback_fixed_order < 0) {
throw std::invalid_argument("Fallback quadrature order cannot be negative.");
if (quadratureOptions.fallback_fixed_order.has_value()) {
if (*quadratureOptions.fallback_fixed_order < 0) {
throw std::invalid_argument(
"Fallback quadrature order cannot be negative."
);
}
quadrature_rule_set.fallback.fixed_order = quadrature_options.fallback_fixed_order;
quadratureRuleSet.fallback.fixed_order =
quadratureOptions.fallback_fixed_order;
}
auto apply_quadrature_options = [&quadrature_options](quadrature::RuleControl& rule_control, const quadrature::QuadratureTermOptions& term_options) {
if (term_options.fixed_order.has_value() && *term_options.fixed_order < 0) {
throw std::invalid_argument("Fixed quadrature order cannot be negative.");
}
auto apply_quadrature_options =
[&quadratureOptions](
quadrature::RuleControl &ruleControl,
const quadrature::QuadratureTermOptions &termOptions
) {
if (termOptions.fixed_order.has_value() &&
*termOptions.fixed_order < 0) {
throw std::invalid_argument(
"Fixed quadrature order cannot be negative."
);
}
if (quadrature_options.validation.reject_negative_boosts && term_options.additional_boost < 0) {
throw std::invalid_argument("Term quadrature boost cannot be negative.");
}
if (quadratureOptions.validation.reject_negative_boosts &&
termOptions.additional_boost < 0) {
throw std::invalid_argument(
"Term quadrature boost cannot be negative."
);
}
rule_control.boost += term_options.additional_boost;
ruleControl.boost += termOptions.additional_boost;
if (term_options.fixed_order.has_value()) {
rule_control.fixed_order = term_options.fixed_order;
}
};
if (termOptions.fixed_order.has_value()) {
ruleControl.fixed_order = termOptions.fixed_order;
}
};
apply_quadrature_options(quadrature_rule_set.gravity_hdiv_mass, quadrature_options.gravity_hdiv_mass);
apply_quadrature_options(quadrature_rule_set.gravity_divergence, quadrature_options.gravity_divergence);
apply_quadrature_options(quadrature_rule_set.gravity_source, quadrature_options.gravity_source);
apply_quadrature_options(quadrature_rule_set.gravity_boundary, quadrature_options.gravity_boundary);
apply_quadrature_options(quadrature_rule_set.density_projection, quadrature_options.density_projection);
apply_quadrature_options(quadrature_rule_set.mass_conservation, quadrature_options.mass_conservation);
apply_quadrature_options(quadrature_rule_set.center_of_mass, quadrature_options.center_of_mass);
apply_quadrature_options(quadrature_rule_set.quadrupole, quadrature_options.quadrupole);
apply_quadrature_options(quadrature_rule_set.gravitational_energy, quadrature_options.gravitational_energy);
apply_quadrature_options(quadrature_rule_set.virial, quadrature_options.virial);
apply_quadrature_options(quadrature_rule_set.error_norm, quadrature_options.error_norm);
apply_quadrature_options(
quadratureRuleSet.gravity_hdiv_mass,
quadratureOptions.gravity_hdiv_mass
);
apply_quadrature_options(quadrature_rule_set.roles.discretization, quadrature_options.roles.discretization);
apply_quadrature_options(quadrature_rule_set.roles.preconditioner, quadrature_options.roles.preconditioner);
apply_quadrature_options(quadrature_rule_set.roles.diagnostic, quadrature_options.roles.diagnostic);
apply_quadrature_options(quadrature_rule_set.roles.projection, quadrature_options.roles.projection);
apply_quadrature_options(
quadratureRuleSet.gravity_divergence,
quadratureOptions.gravity_divergence
);
apply_quadrature_options(
quadratureRuleSet.gravity_source, quadratureOptions.gravity_source
);
apply_quadrature_options(
quadratureRuleSet.gravity_boundary,
quadratureOptions.gravity_boundary
);
apply_quadrature_options(
quadratureRuleSet.centrifugal, quadratureOptions.centrifugal
);
apply_quadrature_options(
quadratureRuleSet.density_projection,
quadratureOptions.density_projection
);
apply_quadrature_options(
quadratureRuleSet.eos_closure, quadratureOptions.eos_closure
);
apply_quadrature_options(
quadratureRuleSet.hydrostatic_equilibrium,
quadratureOptions.hydrostatic_equilibrium
);
apply_quadrature_options(
quadratureRuleSet.isobaric_surface,
quadratureOptions.isobaric_surface
);
apply_quadrature_options(
quadratureRuleSet.mesh_extension, quadratureOptions.mesh_extension
);
apply_quadrature_options(
quadratureRuleSet.mass_conservation,
quadratureOptions.mass_conservation
);
apply_quadrature_options(
quadratureRuleSet.mass_normalization,
quadratureOptions.mass_normalization
);
apply_quadrature_options(
quadratureRuleSet.center_of_mass, quadratureOptions.center_of_mass
);
apply_quadrature_options(
quadratureRuleSet.quadrupole, quadratureOptions.quadrupole
);
apply_quadrature_options(
quadratureRuleSet.gravitational_energy,
quadratureOptions.gravitational_energy
);
apply_quadrature_options(
quadratureRuleSet.pressure_integral,
quadratureOptions.pressure_integral
);
apply_quadrature_options(
quadratureRuleSet.pressure_force, quadratureOptions.pressure_force
);
apply_quadrature_options(
quadratureRuleSet.virial, quadratureOptions.virial
);
apply_quadrature_options(
quadratureRuleSet.error_norm, quadratureOptions.error_norm
);
apply_quadrature_options(
quadratureRuleSet.roles.discretization,
quadratureOptions.roles.discretization
);
apply_quadrature_options(
quadratureRuleSet.roles.preconditioner,
quadratureOptions.roles.preconditioner
);
apply_quadrature_options(
quadratureRuleSet.roles.diagnostic,
quadratureOptions.roles.diagnostic
);
apply_quadrature_options(
quadratureRuleSet.roles.projection,
quadratureOptions.roles.projection
);
fem.quadratureFactory = std::make_unique<quadrature::RuleFactory>(
quadrature::Policy(std::move(quadratureRuleSet))
);
// =====================================================================
// Section 11: Stateless domain mapper
// =====================================================================
auto exteriorDomain = std::make_unique<
const mapping::compactification::KelvinCompactification>(
args.kelvin_options
);
fem.domainMapperStateless =
std::make_unique<mapping::DomainMapperStateless>(
args.domain_mapper_options, std::move(exteriorDomain)
);
fem.quadrature_factory = std::make_unique<quadrature::RuleFactory>(quadrature::Policy(std::move(quadrature_rule_set)));
return fem;
}
}
} // namespace mean_field::fem

View File

@@ -4,7 +4,9 @@ module;
module mean_field;
namespace mean_field::integrators {
AdvectionIntegrator::AdvectionIntegrator(const mapping::DomainMapper &map) : m_map(map) {}
AdvectionIntegrator::AdvectionIntegrator(const mapping::DomainMapper &map)
: m_map(map) {
}
void AdvectionIntegrator::AssembleElementVector(
const mfem::Array<const mfem::FiniteElement *> &el,
@@ -16,17 +18,17 @@ namespace mean_field::integrators {
return;
}
const mfem::FiniteElement *fe_v = el[0];
const mfem::FiniteElement *fe_v = el[0];
const mfem::FiniteElement *fe_rho = el[1];
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const mfem::Vector &v_dofs = *elfun[0];
const mfem::Vector &rho_dofs = *elfun[1];
const mfem::Vector &v_dofs = *elfun[0];
const mfem::Vector &rho_dofs = *elfun[1];
mfem::Vector &r_v = *elvec[0];
mfem::Vector &r_v = *elvec[0];
r_v.SetSize(dof_v * dim);
r_v = 0.0;
if (elvec[1]) {
@@ -37,7 +39,8 @@ namespace mean_field::integrators {
mfem::Vector shape_v(dof_v), shape_rho(dof_rho);
mfem::DenseMatrix dshape_v_ref(dof_v, dim), dshape_v_phys(dof_v, dim);
const mfem::IntegrationRule *ir = &mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder() + 1);
const mfem::IntegrationRule *ir =
&mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder() + 1);
for (int q = 0; q < ir->GetNPoints(); q++) {
const mfem::IntegrationPoint &ip = ir->IntPoint(q);
@@ -80,7 +83,8 @@ namespace mean_field::integrators {
for (int i = 0; i < dof_v; ++i) {
for (int c = 0; c < dim; ++c) {
r_v(i + c * dof_v) += shape_v(i) * rho_val * adv_val(c) * weight;
r_v(i + c * dof_v) +=
shape_v(i) * rho_val * adv_val(c) * weight;
}
}
}
@@ -91,27 +95,30 @@ namespace mean_field::integrators {
mfem::ElementTransformation &Tr,
const mfem::Array<const mfem::Vector *> &elfun,
const mfem::Array2D<mfem::DenseMatrix *> &elmats
) {
const mfem::FiniteElement *fe_v = el[0];
) {
const mfem::FiniteElement *fe_v = el[0];
const mfem::FiniteElement *fe_rho = el[1];
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const mfem::Vector &v_dofs = *elfun[0];
const mfem::Vector &rho_dofs = *elfun[1];
const mfem::Vector &v_dofs = *elfun[0];
const mfem::Vector &rho_dofs = *elfun[1];
mfem::DenseMatrix *dv_dv = elmats(0, 0);
mfem::DenseMatrix *dv_drho = elmats(0, 1);
mfem::DenseMatrix *dv_dv = elmats(0, 0);
mfem::DenseMatrix *dv_drho = elmats(0, 1);
if (dv_dv) *dv_dv = 0.0;
if (dv_drho) *dv_drho = 0.0;
if (dv_dv)
*dv_dv = 0.0;
if (dv_drho)
*dv_drho = 0.0;
mfem::Vector shape_v(dof_v), shape_rho(dof_rho);
mfem::DenseMatrix dshape_v_ref(dof_v, dim), dshape_v_phys(dof_v, dim);
const mfem::IntegrationRule *ir = &mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder() + 1);
const mfem::IntegrationRule *ir =
&mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder() + 1);
for (int q = 0; q < ir->GetNPoints(); q++) {
const mfem::IntegrationPoint &ip = ir->IntPoint(q);
@@ -164,22 +171,27 @@ namespace mean_field::integrators {
double v_dot_grad_phi_j = 0.0;
for (int k = 0; k < dim; ++k) {
v_dot_grad_phi_j += v_val(k) * dshape_v_phys(j, k);
v_dot_grad_phi_j +=
v_val(k) * dshape_v_phys(j, k);
}
for (int d = 0; d < dim; ++d) {
// Trial function component
int col = j + d * dof_v;
int col = j + d * dof_v;
// \rho (\delta \vec{v} \cdot \nabla \vec{v})
// \delta v is along direction 'd' for the cth component of advection
// \delta v is along direction 'd' for the cth
// component of advection
double termA = shape_v(j) * grad_v(c, d);
// \rho(\vec{v} \cdot \nabla \delta \vec{v})
// Only non-zero when the advected component matches the test component
double termB = (c == d) ? v_dot_grad_phi_j : 0.0;
// Only non-zero when the advected component
// matches the test component
double termB =
(c == d) ? v_dot_grad_phi_j : 0.0;
(*dv_dv)(row, col) += shape_v(i) * rho_val * (termA + termB) * weight;
(*dv_dv)(row, col) += shape_v(i) * rho_val *
(termA + termB) * weight;
}
}
}
@@ -192,7 +204,7 @@ namespace mean_field::integrators {
for (int c = 0; c < dim; ++c) {
int row = i + c * dof_v;
for (int j = 0; j < dof_rho; ++j) {
int col = j;
int col = j;
// \delta \rho * (\vec{v} \cdot \nabla \vec{v})
double term = shape_rho(j) * adv_val(c);
@@ -203,4 +215,4 @@ namespace mean_field::integrators {
}
}
}
}
} // namespace mean_field::integrators

View File

@@ -3,41 +3,49 @@ module;
module mean_field;
namespace mean_field::integrators {
CentrifugalForceIntegrator::CentrifugalForceIntegrator(
const mapping::DomainMapper& map,
const mfem::Vector& omega
) : m_map(map), m_omega(3) {
MFEM_ASSERT(omega.Size() == 3, "Omega vector must be 3D");
m_omega = omega;
}
void CentrifugalForceIntegrator::SetOmega(const mfem::Vector& omega) {
CentrifugalForceIntegrator::CentrifugalForceIntegrator(
const mapping::DomainMapper &map,
const mfem::Vector &omega
)
: m_map(map),
m_omega(3) {
MFEM_ASSERT(omega.Size() == 3, "Omega vector must be 3D");
m_omega = omega;
}
void CentrifugalForceIntegrator::SetOmega(const mfem::Vector &omega) {
MFEM_ASSERT(omega.Size() == 3, "Omega vector must be 3D");
m_omega = omega;
}
void CentrifugalForceIntegrator::SetIntegrationRule(
const mfem::IntegrationRule &ir
) {
m_ir = &ir;
}
void CentrifugalForceIntegrator::AssembleElementVector(
const mfem::Array<const mfem::FiniteElement *> &el,
mfem::ElementTransformation &Tr,
const mfem::Array<const mfem::Vector *> &elfun,
const mfem::Array<mfem::Vector *> &elvec
) {
if (utils::is_vacuum(Tr, elvec)) {
return;
}
if (utils::is_vacuum(Tr, elvec)) {
return;
}
const mfem::FiniteElement* fe_v = el[0];
const mfem::FiniteElement* fe_rho = el[1];
const mfem::FiniteElement *fe_v = el[0];
const mfem::FiniteElement *fe_rho = el[1];
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const mfem::Vector& rho_dofs = *elfun[1];
const mfem::Vector &rho_dofs = *elfun[1];
mfem::Vector& r_v = *elvec[0];
r_v = 0.0;
mfem::Vector &r_v = *elvec[0];
r_v.SetSize(dof_v * dim);
r_v = 0.0;
if (elvec[1]) {
elvec[1]->SetSize(dof_rho);
*elvec[1] = 0.0;
@@ -47,10 +55,15 @@ namespace mean_field::integrators {
mfem::Vector x_phys(dim);
mfem::Vector a(dim), b(dim);
const mfem::IntegrationRule* ir = &mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder());
MFEM_VERIFY(
m_ir, "CentrifugalForceIntegrator must be configured with an "
"integration rule before assembly. Call "
"SetIntegrationRule first."
);
const mfem::IntegrationRule *ir = m_ir;
for (int q = 0; q < ir->GetNPoints(); ++q) {
const mfem::IntegrationPoint& ip = ir->IntPoint(q);
const mfem::IntegrationPoint &ip = ir->IntPoint(q);
Tr.SetIntPoint(&ip);
auto [J_inv, detJ, weight] = m_map.GetQuadratureContext(Tr, ip);
@@ -61,14 +74,14 @@ namespace mean_field::integrators {
m_map.GetPhysicalPoint(Tr, ip, x_phys);
// ω x r
a(0) = m_omega(1) * x_phys(2) - m_omega(2) * x_phys(1);
a(1) = m_omega(2) * x_phys(0) - m_omega(0) * x_phys(2);
a(2) = m_omega(0) * x_phys(1) - m_omega(1) * x_phys(0);
a(0) = m_omega(1) * x_phys(2) - m_omega(2) * x_phys(1);
a(1) = m_omega(2) * x_phys(0) - m_omega(0) * x_phys(2);
a(2) = m_omega(0) * x_phys(1) - m_omega(1) * x_phys(0);
// ω x (ω x r) [centrifugal acceleration]
b(0) = m_omega(1) * a(2) - m_omega(2) * a(1);
b(1) = m_omega(2) * a(0) - m_omega(0) * a(2);
b(2) = m_omega(0) * a(1) - m_omega(1) * a(0);
b(0) = m_omega(1) * a(2) - m_omega(2) * a(1);
b(1) = m_omega(2) * a(0) - m_omega(0) * a(2);
b(2) = m_omega(0) * a(1) - m_omega(1) * a(0);
double rho_val = 0.0;
for (int i = 0; i < dof_rho; ++i) {
@@ -89,30 +102,39 @@ namespace mean_field::integrators {
const mfem::Array<const mfem::Vector *> &elfun,
const mfem::Array2D<mfem::DenseMatrix *> &elmats
) {
const mfem::FiniteElement* fe_v = el[0];
const mfem::FiniteElement* fe_rho = el[1];
if (utils::is_vacuum(Tr, elmats)) {
return;
}
const mfem::FiniteElement *fe_v = el[0];
const mfem::FiniteElement *fe_rho = el[1];
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
mfem::DenseMatrix* dv_dv = elmats(0,0);
mfem::DenseMatrix* dv_drho = elmats(0,1);
mfem::DenseMatrix *dv_dv = elmats(0, 0);
mfem::DenseMatrix *dv_drho = elmats(0, 1);
if (dv_dv) *dv_dv = 0.0;
if (elmats(1, 0)) *elmats(1, 0) = 0.0;
if (elmats(1, 1)) *elmats(1, 1) = 0.0;
if (dv_drho) *dv_drho = 0.0;
if (!dv_drho) return;
if (dv_dv)
*dv_dv = 0.0;
if (elmats(1, 0))
*elmats(1, 0) = 0.0;
if (elmats(1, 1))
*elmats(1, 1) = 0.0;
if (dv_drho)
*dv_drho = 0.0;
if (!dv_drho)
return;
mfem::Vector shape_v(dof_v), shape_rho(dof_rho);
mfem::Vector x_phys(dim);
mfem::Vector a(dim), b(dim);
const mfem::IntegrationRule* ir = &mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder());
const mfem::IntegrationRule *ir =
&mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder());
for (int q = 0; q < ir->GetNPoints(); ++q) {
const mfem::IntegrationPoint& ip = ir->IntPoint(q);
const mfem::IntegrationPoint &ip = ir->IntPoint(q);
Tr.SetIntPoint(&ip);
auto [J_inv, detJ, weight] = m_map.GetQuadratureContext(Tr, ip);
@@ -137,10 +159,11 @@ namespace mean_field::integrators {
for (int c = 0; c < dim; ++c) {
const int row = i + c * dof_v;
for (int j = 0; j < dof_rho; ++j) {
(*dv_drho)(row, j) += shape_v(i) * shape_rho(j) * b(c) * weight;
(*dv_drho)(row, j) +=
shape_v(i) * shape_rho(j) * b(c) * weight;
}
}
}
}
}
}
} // namespace mean_field::integrators

View File

@@ -4,38 +4,43 @@ module;
module mean_field;
namespace mean_field::integrators {
CoriolisIntegrator::CoriolisIntegrator(const mapping::DomainMapper& map, const mfem::Vector& omega)
: m_map(map), m_omega(omega) {
CoriolisIntegrator::CoriolisIntegrator(
const mapping::DomainMapper &map,
const mfem::Vector &omega
)
: m_map(map),
m_omega(omega) {
m_omega_mat.SetSize(3, 3);
m_omega_mat = 0.0;
m_omega_mat = 0.0;
m_omega_mat(0, 1) = -m_omega(2);
m_omega_mat(0, 2) = m_omega(1);
m_omega_mat(1, 0) = m_omega(2);
m_omega_mat(0, 2) = m_omega(1);
m_omega_mat(1, 0) = m_omega(2);
m_omega_mat(1, 2) = -m_omega(0);
m_omega_mat(2, 0) = -m_omega(1);
m_omega_mat(2, 1) = m_omega(0);
m_omega_mat(2, 1) = m_omega(0);
}
void CoriolisIntegrator::AssembleElementVector(const mfem::Array<const mfem::FiniteElement *> &el,
mfem::ElementTransformation &Tr,
const mfem::Array<const mfem::Vector *> &elfun,
const mfem::Array<mfem::Vector *> &elvec
void CoriolisIntegrator::AssembleElementVector(
const mfem::Array<const mfem::FiniteElement *> &el,
mfem::ElementTransformation &Tr,
const mfem::Array<const mfem::Vector *> &elfun,
const mfem::Array<mfem::Vector *> &elvec
) {
if (utils::is_vacuum(Tr, elvec)) {
return;
}
const mfem::FiniteElement* fe_v = el[0];
const mfem::FiniteElement* fe_rho = el[1];
const mfem::FiniteElement *fe_v = el[0];
const mfem::FiniteElement *fe_rho = el[1];
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const mfem::Vector& v_dofs = *elfun[0];
const mfem::Vector& rho_dofs = *elfun[1];
const mfem::Vector &v_dofs = *elfun[0];
const mfem::Vector &rho_dofs = *elfun[1];
mfem::Vector& r_v = *elvec[0];
mfem::Vector &r_v = *elvec[0];
r_v.SetSize(dof_v * dim);
r_v = 0.0;
if (elvec[1]) {
@@ -44,10 +49,11 @@ namespace mean_field::integrators {
}
mfem::Vector shape_v(dof_v), shape_rho(dof_rho);
const mfem::IntegrationRule* ir = &mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder());
const mfem::IntegrationRule *ir =
&mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder());
for (int q = 0; q < ir->GetNPoints(); ++q) {
const mfem::IntegrationPoint& ip = ir->IntPoint(q);
const mfem::IntegrationPoint &ip = ir->IntPoint(q);
Tr.SetIntPoint(&ip);
auto [J_inv, detJ, weight] = m_map.GetQuadratureContext(Tr, ip);
@@ -56,11 +62,14 @@ namespace mean_field::integrators {
fe_rho->CalcShape(ip, shape_rho);
double rho_val = 0.0;
for (int i = 0; i < dof_rho; ++i) rho_val += rho_dofs(i) * shape_rho(i);
for (int i = 0; i < dof_rho; ++i)
rho_val += rho_dofs(i) * shape_rho(i);
mfem::Vector v_val(dim); v_val = 0.0;
mfem::Vector v_val(dim);
v_val = 0.0;
for (int i = 0; i < dof_v; ++i) {
for (int c = 0; c < dim; ++c) v_val(c) += v_dofs(i + c * dof_v) * shape_v(i);
for (int c = 0; c < dim; ++c)
v_val(c) += v_dofs(i + c * dof_v) * shape_v(i);
}
mfem::Vector F_coriolis(dim);
@@ -69,39 +78,44 @@ namespace mean_field::integrators {
for (int i = 0; i < dof_v; ++i) {
for (int c = 0; c < dim; ++c) {
r_v(i + c * dof_v) += shape_v(i) * rho_val * F_coriolis(c) * weight;
r_v(i + c * dof_v) +=
shape_v(i) * rho_val * F_coriolis(c) * weight;
}
}
}
}
void CoriolisIntegrator::AssembleElementGrad(const mfem::Array<const mfem::FiniteElement*> &el,
mfem::ElementTransformation &Tr,
const mfem::Array<const mfem::Vector *> &elfun,
const mfem::Array2D<mfem::DenseMatrix *> &elmats
void CoriolisIntegrator::AssembleElementGrad(
const mfem::Array<const mfem::FiniteElement *> &el,
mfem::ElementTransformation &Tr,
const mfem::Array<const mfem::Vector *> &elfun,
const mfem::Array2D<mfem::DenseMatrix *> &elmats
) {
const mfem::FiniteElement* fe_v = el[0];
const mfem::FiniteElement* fe_rho = el[1];
const mfem::FiniteElement *fe_v = el[0];
const mfem::FiniteElement *fe_rho = el[1];
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const mfem::Vector& v_dofs = *elfun[0];
const mfem::Vector& rho_dofs = *elfun[1];
const mfem::Vector &v_dofs = *elfun[0];
const mfem::Vector &rho_dofs = *elfun[1];
mfem::DenseMatrix* dv_dv = elmats(0, 0);
mfem::DenseMatrix* dv_drho = elmats(0, 1);
mfem::DenseMatrix *dv_dv = elmats(0, 0);
mfem::DenseMatrix *dv_drho = elmats(0, 1);
if (dv_dv) *dv_dv = 0.0;
if (dv_drho) *dv_drho = 0.0;
if (dv_dv)
*dv_dv = 0.0;
if (dv_drho)
*dv_drho = 0.0;
mfem::Vector shape_v(dof_v), shape_rho(dof_rho);
const mfem::IntegrationRule* ir = &mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder());
const mfem::IntegrationRule *ir =
&mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder());
for (int q = 0; q < ir->GetNPoints(); ++q) {
const mfem::IntegrationPoint& ip = ir->IntPoint(q);
const mfem::IntegrationPoint &ip = ir->IntPoint(q);
Tr.SetIntPoint(&ip);
auto [J_inv, detJ, weight] = m_map.GetQuadratureContext(Tr, ip);
@@ -110,11 +124,14 @@ namespace mean_field::integrators {
fe_rho->CalcShape(ip, shape_rho);
double rho_val = 0.0;
for (int i = 0; i < dof_rho; ++i) rho_val += rho_dofs(i) * shape_rho(i);
for (int i = 0; i < dof_rho; ++i)
rho_val += rho_dofs(i) * shape_rho(i);
mfem::Vector v_val(dim); v_val = 0.0;
mfem::Vector v_val(dim);
v_val = 0.0;
for (int i = 0; i < dof_v; ++i) {
for (int c = 0; c < dim; ++c) v_val(c) += v_dofs(i + c * dof_v) * shape_v(i);
for (int c = 0; c < dim; ++c)
v_val(c) += v_dofs(i + c * dof_v) * shape_v(i);
}
mfem::Vector F_coriolis(dim);
@@ -124,12 +141,14 @@ namespace mean_field::integrators {
if (dv_dv) {
for (int i = 0; i < dof_v; ++i) {
for (int c = 0; c < dim; ++c) {
int row = i + c * dof_v;
const int row = i + c * dof_v;
for (int j = 0; j < dof_v; ++j) {
for (int d = 0; d < dim; ++d) {
int col = j + d * dof_v;
int col = j + d * dof_v;
double coupling = m_omega_mat(c, d);
(*dv_dv)(row, col) += shape_v(i) * shape_v(j) * 2.0 * rho_val * coupling * weight;
(*dv_dv)(row, col) += shape_v(i) * shape_v(j) *
2.0 * rho_val * coupling *
weight;
}
}
}
@@ -142,11 +161,12 @@ namespace mean_field::integrators {
int row = i + c * dof_v;
for (int j = 0; j < dof_rho; ++j) {
int col = j;
(*dv_drho)(row, col) += shape_v(i) * shape_rho(j) * F_coriolis(c) * weight;
(*dv_drho)(row, col) += shape_v(i) * shape_rho(j) *
F_coriolis(c) * weight;
}
}
}
}
}
}
}
} // namespace mean_field::integrators

View File

@@ -1,124 +1,341 @@
module;
#include <mfem.hpp>
module mean_field;
import :solver.fields;
namespace {
using namespace mean_field;
constexpr int velocity_block =
solver::block_index(solver::FieldBlock::velocity);
constexpr int density_block =
solver::block_index(solver::FieldBlock::density);
constexpr int gravity_gradient_block =
solver::block_index(solver::FieldBlock::gravity_gradient);
constexpr int displacement_block =
solver::block_index(solver::FieldBlock::displacement);
} // namespace
namespace mean_field::integrators {
GravityForceIntegrator::GravityForceIntegrator(
const mapping::DomainMapper& map,
const mfem::GridFunction& phi
): m_map(map), m_phi(&phi) {}
GravityMomentumIntegrator::GravityMomentumIntegrator(
const mapping::DomainMapper &map,
const GravityForceJacobianMode jacobian_mode
)
: m_map(map),
m_jacobian_mode(jacobian_mode) {
}
void GravityForceIntegrator::SetPotential(const mfem::GridFunction& phi) { m_phi = &phi; };
void GravityMomentumIntegrator::SetJacobianMode(
const GravityForceJacobianMode jacobian_mode
) {
m_jacobian_mode = jacobian_mode;
}
void GravityForceIntegrator::AssembleElementVector(
void GravityMomentumIntegrator::SetIntegrationRule(
const mfem::IntegrationRule &integration_rule
) {
m_integration_rule = &integration_rule;
}
GravityForceJacobianMode
GravityMomentumIntegrator::GetJacobianMode() const {
return m_jacobian_mode;
}
void GravityMomentumIntegrator::AssembleElementVector(
const mfem::Array<const mfem::FiniteElement *> &el,
mfem::ElementTransformation &Tr,
const mfem::Array<const mfem::Vector *> &elfun,
const mfem::Array<mfem::Vector *> &elvec
) {
if (utils::is_vacuum(Tr, elvec)) {
return;
}
const mfem::FiniteElement* fe_v = el[0];
const mfem::FiniteElement* fe_rho = el[1];
MFEM_VERIFY(
m_integration_rule,
"GravityForceIntegrator must be configured with an "
"integration rule before assembly."
);
MFEM_VERIFY(
el.Size() > gravity_gradient_block,
"GravityForceIntegrator requires velocity, density, and "
"gravity-gradient finite elements."
);
MFEM_VERIFY(
elfun.Size() > gravity_gradient_block,
"GravityForceIntegrator requires velocity, density, and "
"gravity-gradient element states."
);
MFEM_VERIFY(
elvec.Size() > velocity_block && elvec[velocity_block],
"GravityForceIntegrator requires a velocity residual block."
);
MFEM_VERIFY(
el[velocity_block] && el[density_block] &&
el[gravity_gradient_block],
"GravityForceIntegrator received a null finite element."
);
MFEM_VERIFY(
elfun[density_block] && elfun[gravity_gradient_block],
"GravityForceIntegrator received a null element state."
);
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const mfem::FiniteElement *velocity_element = el[velocity_block];
const mfem::FiniteElement *density_element = el[density_block];
const mfem::FiniteElement *gravity_gradient_element =
el[gravity_gradient_block];
const mfem::Vector& rho_dofs = *elfun[1];
const int velocity_dofs_count = velocity_element->GetDof();
const int density_dofs_count = density_element->GetDof();
const int gravity_gradient_dofs_count =
gravity_gradient_element->GetDof();
const int dim = Tr.GetSpaceDim();
mfem::Vector& r_v = *elvec[0];
r_v.SetSize(dof_v * dim);
r_v = 0.0;
if (elvec[1]) {
elvec[1]->SetSize(dof_rho);
*elvec[1] = 0.0;
const mfem::Vector &density_dofs = *elfun[density_block];
const mfem::Vector &gravity_gradient_dofs =
*elfun[gravity_gradient_block];
MFEM_VERIFY(
density_dofs.Size() == density_dofs_count,
"GravityForceIntegrator received an incorrectly sized density "
"state."
);
MFEM_VERIFY(
gravity_gradient_dofs.Size() == gravity_gradient_dofs_count,
"GravityForceIntegrator received an incorrectly sized "
"gravity-gradient "
"state."
);
for (int block = 0; block < elvec.Size(); ++block) {
if (elvec[block]) {
*elvec[block] = 0.0;
}
}
mfem::Vector shape_v(dof_v), shape_rho(dof_rho);
mfem::Vector grad_phi_ref(dim), grad_phi_phys(dim), grad_phi_elem(dim);
mfem::Vector &velocity_residual = *elvec[velocity_block];
velocity_residual.SetSize(dim * velocity_dofs_count);
velocity_residual = 0.0;
const mfem::IntegrationRule* ir = &mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder());
if (elvec.Size() > density_block && elvec[density_block]) {
elvec[density_block]->SetSize(density_dofs_count);
*elvec[density_block] = 0.0;
}
for (int q = 0; q < ir->GetNPoints(); ++q) {
const mfem::IntegrationPoint& ip = ir->IntPoint(q);
Tr.SetIntPoint(&ip);
if (elvec.Size() > gravity_gradient_block &&
elvec[gravity_gradient_block]) {
elvec[gravity_gradient_block]->SetSize(gravity_gradient_dofs_count);
*elvec[gravity_gradient_block] = 0.0;
}
auto [J_inv, detJ, weight] = m_map.GetQuadratureContext(Tr, ip);
m_phi->GetGradient(Tr, grad_phi_elem);
mfem::DenseMatrix J_map(dim, dim), J_map_inv(dim, dim);
m_map.ComputeJacobian(Tr, J_map);
mfem::CalcInverse(J_map, J_map_inv);
J_map_inv.MultTranspose(grad_phi_elem, grad_phi_phys);
mfem::Vector velocity_shape(velocity_dofs_count);
mfem::Vector density_shape(density_dofs_count);
mfem::DenseMatrix gravity_gradient_shape(
gravity_gradient_dofs_count, dim
);
mfem::Vector gravity_gradient_element_value(dim);
mfem::Vector gravity_gradient_physical_value(dim);
fe_v->CalcShape(ip, shape_v);
fe_rho->CalcShape(ip, shape_rho);
const mfem::IntegrationRule &integration_rule = *m_integration_rule;
double rho_val = 0.0;
for (int i = 0; i < dof_rho; ++i) {
rho_val += rho_dofs(i) * shape_rho(i);
for (int q = 0; q < integration_rule.GetNPoints(); ++q) {
const mfem::IntegrationPoint &integration_point =
integration_rule.IntPoint(q);
Tr.SetIntPoint(&integration_point);
const mapping::VolumeQuadratureContext context =
m_map.GetQuadratureContext(Tr, integration_point);
velocity_element->CalcShape(integration_point, velocity_shape);
density_element->CalcShape(integration_point, density_shape);
gravity_gradient_element->CalcVShape(Tr, gravity_gradient_shape);
gravity_gradient_shape.MultTranspose(
gravity_gradient_dofs, gravity_gradient_element_value
);
context.J_inv.MultTranspose(
gravity_gradient_element_value, gravity_gradient_physical_value
);
double density_value = 0.0;
for (int i = 0; i < density_dofs_count; ++i) {
density_value += density_dofs(i) * density_shape(i);
}
for (int i = 0; i < dof_v; ++i) {
for (int c = 0; c < dim; ++c) {
r_v(i + c * dof_v) += shape_v(i) * rho_val * grad_phi_phys(c) * weight;
for (int i = 0; i < velocity_dofs_count; ++i) {
for (int component = 0; component < dim; ++component) {
velocity_residual(i + component * velocity_dofs_count) +=
velocity_shape(i) * density_value *
gravity_gradient_physical_value(component) *
context.weight;
}
}
}
}
void GravityForceIntegrator::AssembleElementGrad(
void GravityMomentumIntegrator::AssembleElementGrad(
const mfem::Array<const mfem::FiniteElement *> &el,
mfem::ElementTransformation &Tr,
const mfem::Array<const mfem::Vector *> &elfun,
const mfem::Array2D<mfem::DenseMatrix *> &elmats
) {
const mfem::FiniteElement* fe_v = el[0];
const mfem::FiniteElement* fe_rho = el[1];
if (utils::is_vacuum(Tr, elmats)) {
return;
}
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
MFEM_VERIFY(
m_integration_rule,
"GravityForceIntegrator must be configured with an "
"integration rule before assembly."
);
MFEM_VERIFY(
el.Size() > gravity_gradient_block,
"GravityForceIntegrator requires velocity, density, and "
"gravity-gradient finite elements."
);
MFEM_VERIFY(
elfun.Size() > gravity_gradient_block,
"GravityForceIntegrator requires velocity, density, and "
"gravity-gradient element states."
);
MFEM_VERIFY(
el[velocity_block] && el[density_block] &&
el[gravity_gradient_block],
"GravityForceIntegrator received a null finite element."
);
MFEM_VERIFY(
elfun[density_block] && elfun[gravity_gradient_block],
"GravityForceIntegrator received a null element state."
);
mfem::DenseMatrix* dv_dv = elmats(0, 0);
mfem::DenseMatrix* dv_drho = elmats(0, 1);
for (int row = 0; row < elmats.NumRows(); ++row) {
for (int column = 0; column < elmats.NumCols(); ++column) {
if (elmats(row, column)) {
*elmats(row, column) = 0.0;
}
}
}
if (dv_dv) *dv_dv = 0.0;
if (dv_drho) *dv_drho = 0.0;
if (m_jacobian_mode == GravityForceJacobianMode::exact) {
MFEM_ABORT(
"Exact GravityForceIntegrator geometry Jacobian is unavailable "
"until "
"DomainMapper linearization is "
"implemented."
);
}
if (!dv_drho) return;
const mfem::FiniteElement *velocity_element = el[velocity_block];
const mfem::FiniteElement *density_element = el[density_block];
const mfem::FiniteElement *gravity_gradient_element =
el[gravity_gradient_block];
mfem::Vector shape_v(dof_v), shape_rho(dof_rho);
mfem::Vector grad_phi_ref(dim), grad_phi_phys(dim), grad_phi_elem(dim);
const int velocity_dofs_count = velocity_element->GetDof();
const int density_dofs_count = density_element->GetDof();
const int gravity_gradient_dofs_count =
gravity_gradient_element->GetDof();
const int dim = Tr.GetSpaceDim();
const mfem::IntegrationRule* ir = &mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder());
const mfem::Vector &density_dofs = *elfun[density_block];
const mfem::Vector &gravity_gradient_dofs =
*elfun[gravity_gradient_block];
for (int q = 0; q < ir->GetNPoints(); ++q) {
const mfem::IntegrationPoint& ip = ir->IntPoint(q);
Tr.SetIntPoint(&ip);
MFEM_VERIFY(
density_dofs.Size() == density_dofs_count,
"GravityForceIntegrator received an incorrectly sized density "
"state."
);
MFEM_VERIFY(
gravity_gradient_dofs.Size() == gravity_gradient_dofs_count,
"GravityForceIntegrator received an incorrectly sized "
"gravity-gradient "
"state."
);
auto [J_inv, detJ, weight] = m_map.GetQuadratureContext(Tr, ip);
m_phi->GetGradient(Tr, grad_phi_elem);
mfem::DenseMatrix J_map(dim, dim), J_map_inv(dim, dim);
m_map.ComputeJacobian(Tr, J_map);
mfem::CalcInverse(J_map, J_map_inv);
J_map_inv.MultTranspose(grad_phi_elem, grad_phi_phys);
mfem::DenseMatrix *dv_drho = elmats(velocity_block, density_block);
mfem::DenseMatrix *dv_dgrad_phi =
m_jacobian_mode == GravityForceJacobianMode::field_coupled
? elmats(velocity_block, gravity_gradient_block)
: nullptr;
fe_v->CalcShape(ip, shape_v);
fe_rho->CalcShape(ip, shape_rho);
if (!dv_drho && !dv_dgrad_phi) {
return;
}
mfem::Vector velocity_shape(velocity_dofs_count);
mfem::Vector density_shape(density_dofs_count);
mfem::DenseMatrix gravity_gradient_shape(
gravity_gradient_dofs_count, dim
);
mfem::Vector gravity_gradient_element_value(dim);
mfem::Vector gravity_gradient_physical_value(dim);
mfem::Vector gravity_basis_element(dim);
mfem::Vector gravity_basis_physical(dim);
for (int i = 0; i < dof_v; ++i) {
for (int c = 0; c < dim; ++c) {
const int row = i + c * dof_v;
for (int j = 0; j < dof_rho; ++j) {
(*dv_drho)(row, j) += shape_v(i) * shape_rho(j) * grad_phi_phys(c) * weight;
const mfem::IntegrationRule &integration_rule = *m_integration_rule;
for (int q = 0; q < integration_rule.GetNPoints(); ++q) {
const mfem::IntegrationPoint &integration_point =
integration_rule.IntPoint(q);
Tr.SetIntPoint(&integration_point);
const mapping::VolumeQuadratureContext context =
m_map.GetQuadratureContext(Tr, integration_point);
velocity_element->CalcShape(integration_point, velocity_shape);
density_element->CalcShape(integration_point, density_shape);
gravity_gradient_element->CalcVShape(Tr, gravity_gradient_shape);
gravity_gradient_shape.MultTranspose(
gravity_gradient_dofs, gravity_gradient_element_value
);
context.J_inv.MultTranspose(
gravity_gradient_element_value, gravity_gradient_physical_value
);
double density_value = 0.0;
for (int i = 0; i < density_dofs_count; ++i) {
density_value += density_dofs(i) * density_shape(i);
}
if (dv_drho) {
for (int i = 0; i < velocity_dofs_count; ++i) {
for (int component = 0; component < dim; ++component) {
const int row = i + component * velocity_dofs_count;
for (int j = 0; j < density_dofs_count; ++j) {
(*dv_drho)(row, j) +=
velocity_shape(i) * density_shape(j) *
gravity_gradient_physical_value(component) *
context.weight;
}
}
}
}
if (dv_dgrad_phi) {
for (int j = 0; j < gravity_gradient_dofs_count; ++j) {
for (int component = 0; component < dim; ++component) {
gravity_basis_element(component) =
gravity_gradient_shape(j, component);
}
context.J_inv.MultTranspose(
gravity_basis_element, gravity_basis_physical
);
for (int i = 0; i < velocity_dofs_count; ++i) {
for (int component = 0; component < dim; ++component) {
const int row = i + component * velocity_dofs_count;
(*dv_dgrad_phi)(row, j) +=
velocity_shape(i) * density_value *
gravity_basis_physical(component) *
context.weight;
}
}
}
}
}
}
}
} // namespace mean_field::integrators

View File

@@ -4,7 +4,10 @@ module;
module mean_field;
namespace mean_field::integrators {
ContinuityVolumeIntegrator::ContinuityVolumeIntegrator(const mapping::DomainMapper& map) : m_map(map) {};
ContinuityVolumeIntegrator::ContinuityVolumeIntegrator(
const mapping::DomainMapper &map
)
: m_map(map) { };
void ContinuityVolumeIntegrator::AssembleElementVector(
const mfem::Array<const mfem::FiniteElement *> &el,
@@ -16,35 +19,37 @@ namespace mean_field::integrators {
return;
}
const mfem::FiniteElement *fe_v = el[0];
const mfem::FiniteElement *fe_v = el[0];
const mfem::FiniteElement *fe_rho = el[1];
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const mfem::Vector v_dofs = *elfun[0];
const mfem::Vector rho_dofs = *elfun[1];
const mfem::Vector v_dofs = *elfun[0];
const mfem::Vector rho_dofs = *elfun[1];
void* data_rho_before = elvec[1] ? (void*)elvec[1]->GetData() : nullptr;
void *data_rho_before =
elvec[1] ? (void *)elvec[1]->GetData() : nullptr;
int size_rho_before = elvec[1] ? elvec[1]->Size() : -1;
if (elvec[0]) {
elvec[0]->SetSize(dof_v * dim);
*elvec[0] = 0.0;
}
mfem::Vector& r_rho = *elvec[1];
mfem::Vector &r_rho = *elvec[1];
r_rho.SetSize(dof_rho);
r_rho = 0.0;
mfem::Vector shape_v(dof_v), shape_rho(dof_rho);
mfem::DenseMatrix dshape_rho_ref(dof_rho, dim), dshape_rho_phys(dof_rho, dim);
mfem::DenseMatrix dshape_rho_ref(dof_rho, dim),
dshape_rho_phys(dof_rho, dim);
const mfem::IntegrationRule* ir = &mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder());
const mfem::IntegrationRule *ir =
&mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder());
for (int q = 0; q < ir->GetNPoints(); ++q) {
const mfem::IntegrationPoint& ip = ir->IntPoint(q);
const mfem::IntegrationPoint &ip = ir->IntPoint(q);
Tr.SetIntPoint(&ip);
auto [J_inv, detJ, weight] = m_map.GetQuadratureContext(Tr, ip);
@@ -54,7 +59,8 @@ namespace mean_field::integrators {
fe_rho->CalcDShape(ip, dshape_rho_ref);
mfem::Mult(dshape_rho_ref, J_inv, dshape_rho_phys);
mfem::Vector v_val(dim); v_val = 0.0;
mfem::Vector v_val(dim);
v_val = 0.0;
for (int i = 0; i < dof_v; ++i) {
for (int c = 0; c < dim; ++c) {
const int row = i + c * dof_v;
@@ -83,32 +89,38 @@ namespace mean_field::integrators {
const mfem::Array2D<mfem::DenseMatrix *> &elmats
) {
const mfem::FiniteElement *fe_v = el[0];
const mfem::FiniteElement *fe_v = el[0];
const mfem::FiniteElement *fe_rho = el[1];
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const mfem::Vector& v_dofs = *elfun[0];
const mfem::Vector& rho_dofs = *elfun[1];
const mfem::Vector &v_dofs = *elfun[0];
const mfem::Vector &rho_dofs = *elfun[1];
mfem::DenseMatrix* drho_dv = elmats(1, 0);
mfem::DenseMatrix* drho_drho = elmats(1, 1);
mfem::DenseMatrix *drho_dv = elmats(1, 0);
mfem::DenseMatrix *drho_drho = elmats(1, 1);
if (elmats(0, 0)) *elmats(0, 0) = 0.0;
if (elmats(0, 1)) *elmats(0, 1) = 0.0;
if (elmats(0, 0))
*elmats(0, 0) = 0.0;
if (elmats(0, 1))
*elmats(0, 1) = 0.0;
if (drho_dv) *drho_dv = 0.0;
if (drho_drho) *drho_drho = 0.0;
if (drho_dv)
*drho_dv = 0.0;
if (drho_drho)
*drho_drho = 0.0;
mfem::Vector shape_v(dof_v), shape_rho(dof_rho);
mfem::DenseMatrix dshape_rho_ref(dof_rho, dim), dshape_rho_phys(dof_rho, dim);
mfem::DenseMatrix dshape_rho_ref(dof_rho, dim),
dshape_rho_phys(dof_rho, dim);
const mfem::IntegrationRule* ir = &mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder());
const mfem::IntegrationRule *ir =
&mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder());
for (int q = 0; q < ir->GetNPoints(); ++q) {
const mfem::IntegrationPoint& ip = ir->IntPoint(q);
const mfem::IntegrationPoint &ip = ir->IntPoint(q);
Tr.SetIntPoint(&ip);
auto [J_inv, detJ, weight] = m_map.GetQuadratureContext(Tr, ip);
@@ -118,7 +130,8 @@ namespace mean_field::integrators {
fe_rho->CalcDShape(ip, dshape_rho_ref);
mfem::Mult(dshape_rho_ref, J_inv, dshape_rho_phys);
mfem::Vector v_val(dim); v_val = 0.0;
mfem::Vector v_val(dim);
v_val = 0.0;
for (int i = 0; i < dof_v; ++i) {
for (int c = 0; c < dim; ++c) {
const int row = i + c * dof_v;
@@ -136,7 +149,8 @@ namespace mean_field::integrators {
for (int j = 0; j < dof_v; ++j) {
for (int d = 0; d < dim; ++d) {
const int col = j + d * dof_v;
(*drho_dv)(i, col) -= dshape_rho_phys(i, d) * rho_val * shape_v(j) * weight;
(*drho_dv)(i, col) -= dshape_rho_phys(i, d) *
rho_val * shape_v(j) * weight;
}
}
}
@@ -149,15 +163,19 @@ namespace mean_field::integrators {
grad_psi_dot_v += dshape_rho_phys(i, c) * v_val(c);
}
for (int j = 0; j < dof_rho; ++j) {
(*drho_drho)(i, j) -= grad_psi_dot_v * shape_rho(j) * weight;
(*drho_drho)(i, j) -=
grad_psi_dot_v * shape_rho(j) * weight;
}
}
}
}
}
ContinuityFaceIntegrator::ContinuityFaceIntegrator(const mapping::DomainMapper& map): m_map(map) {}
ContinuityFaceIntegrator::ContinuityFaceIntegrator(
const mapping::DomainMapper &map
)
: m_map(map) {
}
void ContinuityFaceIntegrator::AssembleFaceVector(
const mfem::Array<const mfem::FiniteElement *> &el1,
@@ -166,19 +184,19 @@ namespace mean_field::integrators {
const mfem::Array<const mfem::Vector *> &elfun,
const mfem::Array<mfem::Vector *> &elvect
) {
const mfem::FiniteElement *fe_v_minus = el1[0];
const mfem::FiniteElement *fe_v_plus = el2[0];
const mfem::FiniteElement *fe_v_minus = el1[0];
const mfem::FiniteElement *fe_v_plus = el2[0];
const mfem::FiniteElement *fe_rho_minus = el1[1];
const mfem::FiniteElement *fe_rho_plus = el2[1];
const mfem::FiniteElement *fe_rho_plus = el2[1];
const int dof_v_minus = fe_v_minus->GetDof();
const int dof_v_plus = fe_v_plus->GetDof();
const int dof_v_minus = fe_v_minus->GetDof();
const int dof_v_plus = fe_v_plus->GetDof();
const int dof_rho_minus = fe_rho_minus->GetDof();
const int dof_rho_plus = fe_rho_plus->GetDof();
const int dof_rho_minus = fe_rho_minus->GetDof();
const int dof_rho_plus = fe_rho_plus->GetDof();
const int dim = Tr.GetSpaceDim();
const int dim = Tr.GetSpaceDim();
if (elvect[0]) {
elvect[0]->SetSize(dim * dof_v_minus + dim * dof_v_plus);
@@ -186,10 +204,10 @@ namespace mean_field::integrators {
}
mfem::Vector &r_rho = *elvect[1];
r_rho.SetSize(dof_rho_minus + dof_rho_plus);
r_rho = 0.0;
r_rho = 0.0;
const int attr_minus = Tr.Elem1->Attribute;
const int attr_plus = (Tr.Elem2 != nullptr) ? Tr.Elem2->Attribute : -1;
const int attr_plus = (Tr.Elem2 != nullptr) ? Tr.Elem2->Attribute : -1;
constexpr int VACUUM_ATTR = 3;
if (attr_minus == VACUUM_ATTR || attr_plus == VACUUM_ATTR) {
@@ -200,30 +218,39 @@ namespace mean_field::integrators {
return; // Boundary face,
}
const mfem::Vector &v_dofs = *elfun[0]; // Size: dim * dof_v_minus + dim*dof_v_plus
const mfem::Vector &rho_dofs = *elfun[1]; // Size: dof_rho_minus + dof_rho_plus
const mfem::Vector &v_dofs =
*elfun[0]; // Size: dim * dof_v_minus + dim*dof_v_plus
const mfem::Vector &rho_dofs =
*elfun[1]; // Size: dof_rho_minus + dof_rho_plus
// Helpers to auto offset to the correct point in the dof array
auto rho_minus_dof = [&](const int i) {return rho_dofs(i);};
auto rho_plus_dof = [&](const int i) {return rho_dofs(i + dof_rho_minus);};
auto v_minus_dof = [&](const int k, const int c) {return v_dofs(k + c * dof_v_minus);};
auto rho_minus_dof = [&](const int i) { return rho_dofs(i); };
auto rho_plus_dof = [&](const int i) {
return rho_dofs(i + dof_rho_minus);
};
auto v_minus_dof = [&](const int k, const int c) {
return v_dofs(k + c * dof_v_minus);
};
const int p_v = fe_v_minus->GetOrder();
const int p_rho = fe_rho_minus->GetOrder();
const int p_v = fe_v_minus->GetOrder();
const int p_rho = fe_rho_minus->GetOrder();
const int int_order = 2 * std::max(p_v, p_rho) + 1;
const mfem::IntegrationRule *ir = &mfem::IntRules.Get(Tr.GetGeometryType(), int_order);
const mfem::IntegrationRule *ir =
&mfem::IntRules.Get(Tr.GetGeometryType(), int_order);
mfem::Vector shape_v_minus(dof_v_minus), shape_rho_minus(dof_rho_minus), shape_rho_plus(dof_rho_plus);
mfem::Vector shape_v_minus(dof_v_minus), shape_rho_minus(dof_rho_minus),
shape_rho_plus(dof_rho_plus);
for (int q = 0; q < ir->GetNPoints(); ++q) {
const mfem::IntegrationPoint& face_ip = ir->IntPoint(q);
const mfem::IntegrationPoint &face_ip = ir->IntPoint(q);
Tr.SetAllIntPoints(&face_ip);
const mfem::IntegrationPoint &ip_minus = Tr.GetElement1IntPoint();
const mfem::IntegrationPoint &ip_plus = Tr.GetElement2IntPoint();
const mfem::IntegrationPoint &ip_plus = Tr.GetElement2IntPoint();
auto [n_unit, ds, v_dot_n_scale] = m_map.GetFaceQuadratureContext(Tr, face_ip);
auto [n_unit, ds, v_dot_n_scale] =
m_map.GetFaceQuadratureContext(Tr, face_ip);
fe_v_minus->CalcShape(ip_minus, shape_v_minus);
fe_rho_minus->CalcShape(ip_minus, shape_rho_minus);
@@ -251,12 +278,14 @@ namespace mean_field::integrators {
}
// Upwind density
// I use the convention that the flow is positive when moving from minus to plus
// I use the convention that the flow is positive when moving from
// minus to plus
const double rho_up = (u_n >= 0) ? rho_minus_val : rho_plus_val;
const double flux_weighted = u_n * rho_up * ds;
// Note the normals need to be in opposite directions for these two fluxes
// Note the normals need to be in opposite directions for these two
// fluxes
for (int i = 0; i < dof_rho_minus; ++i) {
r_rho(i) += shape_rho_minus(i) * flux_weighted;
}
@@ -274,25 +303,26 @@ namespace mean_field::integrators {
const mfem::Array<const mfem::Vector *> &elfun,
const mfem::Array2D<mfem::DenseMatrix *> &elmats
) {
const mfem::FiniteElement *fe_v_minus = el1[0];
const mfem::FiniteElement *fe_v_plus = el2[0];
const mfem::FiniteElement *fe_v_minus = el1[0];
const mfem::FiniteElement *fe_v_plus = el2[0];
const mfem::FiniteElement *fe_rho_minus = el1[1];
const mfem::FiniteElement *fe_rho_plus = el2[1];
const mfem::FiniteElement *fe_rho_plus = el2[1];
const int dof_v_minus = fe_v_minus->GetDof();
const int dof_v_plus = fe_v_plus->GetDof();
const int dof_rho_minus = fe_rho_minus->GetDof();
const int dof_rho_plus = fe_rho_plus->GetDof();
const int dim = Tr.GetSpaceDim();
const int dof_v_minus = fe_v_minus->GetDof();
const int dof_v_plus = fe_v_plus->GetDof();
const int dof_rho_minus = fe_rho_minus->GetDof();
const int dof_rho_plus = fe_rho_plus->GetDof();
const int dim = Tr.GetSpaceDim();
const int N_v_total = dim * (dof_v_minus + dof_v_plus);
const int N_rho_total = dof_rho_minus + dof_rho_plus;
const int N_v_total = dim * (dof_v_minus + dof_v_plus);
const int N_rho_total = dof_rho_minus + dof_rho_plus;
auto size_and_zero_mat = [&](mfem::DenseMatrix* mat, const int r_size, const int c_size) {
if (mat) {
mat->SetSize(r_size, c_size);
*mat = 0.0;
}
auto size_and_zero_mat = [&](mfem::DenseMatrix *mat, const int r_size,
const int c_size) {
if (mat) {
mat->SetSize(r_size, c_size);
*mat = 0.0;
}
};
size_and_zero_mat(elmats(0, 0), N_v_total, N_v_total);
@@ -300,34 +330,41 @@ namespace mean_field::integrators {
size_and_zero_mat(elmats(1, 0), N_rho_total, N_v_total);
size_and_zero_mat(elmats(1, 1), N_rho_total, N_rho_total);
if (skip_face(Tr)) return;
if (skip_face(Tr))
return;
mfem::DenseMatrix *drho_dv = elmats(1, 0);
mfem::DenseMatrix *drho_dv = elmats(1, 0);
mfem::DenseMatrix *drho_drho = elmats(1, 1);
if (!drho_dv && !drho_drho) return;
if (!drho_dv && !drho_drho)
return;
const mfem::Vector &v_dofs = *elfun[0];
const mfem::Vector &v_dofs = *elfun[0];
const mfem::Vector &rho_dofs = *elfun[1];
const int int_order = 2 * std::max(fe_v_minus->GetOrder(), fe_rho_minus->GetOrder()) + 1;
const mfem::IntegrationRule *ir = &mfem::IntRules.Get(Tr.GetGeometryType(), int_order);
const int int_order =
2 * std::max(fe_v_minus->GetOrder(), fe_rho_minus->GetOrder()) + 1;
const mfem::IntegrationRule *ir =
&mfem::IntRules.Get(Tr.GetGeometryType(), int_order);
mfem::Vector shape_v_minus(dof_v_minus), shape_rho_minus(dof_rho_minus), shape_rho_plus(dof_rho_plus);
mfem::Vector shape_v_minus(dof_v_minus), shape_rho_minus(dof_rho_minus),
shape_rho_plus(dof_rho_plus);
for (int q = 0; q < ir->GetNPoints(); ++q) {
const mfem::IntegrationPoint& face_ip = ir->IntPoint(q);
const mfem::IntegrationPoint &face_ip = ir->IntPoint(q);
Tr.SetAllIntPoints(&face_ip);
const mfem::IntegrationPoint &ip_minus = Tr.GetElement1IntPoint();
const mfem::IntegrationPoint &ip_plus = Tr.GetElement2IntPoint();
const mfem::IntegrationPoint &ip_plus = Tr.GetElement2IntPoint();
auto [n_unit, ds, v_dot_n_scale] = m_map.GetFaceQuadratureContext(Tr, face_ip);
auto [n_unit, ds, v_dot_n_scale] =
m_map.GetFaceQuadratureContext(Tr, face_ip);
fe_v_minus->CalcShape(ip_minus, shape_v_minus);
fe_rho_minus->CalcShape(ip_minus, shape_rho_minus);
fe_rho_plus->CalcShape(ip_plus, shape_rho_plus);
const double u_n = compute_u_n(v_dofs, shape_v_minus, n_unit, dof_v_minus, dim);
const double u_n =
compute_u_n(v_dofs, shape_v_minus, n_unit, dof_v_minus, dim);
double rho_minus_val = 0.0;
for (int i = 0; i < dof_rho_minus; ++i) {
@@ -353,18 +390,21 @@ namespace mean_field::integrators {
(*drho_drho)(i, ip) += shape_rho_minus(i) * col_w;
}
for (int j = 0; j < dof_rho_plus; ++j) {
(*drho_drho)(dof_rho_minus + j, ip) -= shape_rho_plus(j) * col_w;
(*drho_drho)(dof_rho_minus + j, ip) -=
shape_rho_plus(j) * col_w;
}
}
} else {
for (int jp = 0; jp < dof_rho_plus; ++jp) {
const double col_w = u_w * shape_rho_plus(jp);
const int col_idx = dof_rho_minus + jp;
const int col_idx = dof_rho_minus + jp;
for (int i = 0; i < dof_rho_minus; ++i) {
(*drho_drho)(i, col_idx) += shape_rho_minus(i) * col_w;
(*drho_drho)(i, col_idx) +=
shape_rho_minus(i) * col_w;
}
for (int j = 0; j < dof_rho_plus; ++j) {
(*drho_drho)(dof_rho_minus + j, col_idx) -= shape_rho_plus(j) * col_w;
(*drho_drho)(dof_rho_minus + j, col_idx) -=
shape_rho_plus(j) * col_w;
}
}
}
@@ -375,13 +415,15 @@ namespace mean_field::integrators {
for (int c = 0; c < dim; ++c) {
const double n_c_rho_w = n_unit(c) * rho_w;
for (int k = 0; k < dof_v_minus; ++k) {
const int col_idx = k + c * dof_v_minus;
const int col_idx = k + c * dof_v_minus;
const double col_w = n_c_rho_w * shape_v_minus(k);
for (int i = 0; i < dof_rho_minus; ++i) {
(*drho_dv)(i, col_idx) += shape_rho_minus(i) * col_w;
(*drho_dv)(i, col_idx) +=
shape_rho_minus(i) * col_w;
}
for (int j = 0; j < dof_rho_plus; ++j) {
(*drho_dv)(dof_rho_minus + j, col_idx) -= shape_rho_plus(j) * col_w;
(*drho_dv)(dof_rho_minus + j, col_idx) -=
shape_rho_plus(j) * col_w;
}
}
}
@@ -389,9 +431,11 @@ namespace mean_field::integrators {
}
}
bool ContinuityFaceIntegrator::skip_face(const mfem::FaceElementTransformations& Tr) {
bool ContinuityFaceIntegrator::skip_face(
const mfem::FaceElementTransformations &Tr
) {
constexpr int VACUUM_ATTR = 3;
const int attr_minus = Tr.Elem1->Attribute;
const int attr_minus = Tr.Elem1->Attribute;
const int attr_plus = (Tr.Elem2 != nullptr) ? Tr.Elem2->Attribute : -1;
if (attr_minus == VACUUM_ATTR || attr_plus == VACUUM_ATTR) {
return true; // No flux contribution for vacuum faces
@@ -402,7 +446,13 @@ namespace mean_field::integrators {
return false;
}
double ContinuityFaceIntegrator::compute_u_n(const mfem::Vector& v_dofs, const mfem::Vector& shape_v_minus, const mfem::Vector& n_unit, int dof_v_minus, int dim) {
double ContinuityFaceIntegrator::compute_u_n(
const mfem::Vector &v_dofs,
const mfem::Vector &shape_v_minus,
const mfem::Vector &n_unit,
int dof_v_minus,
int dim
) {
double u_n = 0.0;
for (int c = 0; c < dim; ++c) {
double v_c = 0.0;
@@ -413,5 +463,4 @@ namespace mean_field::integrators {
}
return u_n;
}
}
} // namespace mean_field::integrators

View File

@@ -4,12 +4,18 @@ module mean_field;
namespace mean_field::integrators {
ViscosityIntegrator::ViscosityIntegrator(
const mapping::DomainMapper& map,
const mapping::DomainMapper &map,
const double mu,
const int quad_boost
) : m_map(map), m_mu(mu), m_quad_boost(quad_boost) {}
)
: m_map(map),
m_mu(mu),
m_quad_boost(quad_boost) {
}
void ViscosityIntegrator::SetMu(const double mu) { m_mu = mu; }
void ViscosityIntegrator::SetMu(const double mu) {
m_mu = mu;
}
void ViscosityIntegrator::AssembleElementVector(
const mfem::Array<const mfem::FiniteElement *> &el,
@@ -21,19 +27,19 @@ namespace mean_field::integrators {
return;
}
void* data_before = (void*)elvec[0]->GetData();
int size_before = elvec[0]->Size();
void *data_before = (void *)elvec[0]->GetData();
int size_before = elvec[0]->Size();
const mfem::FiniteElement* fe_v = el[0];
const mfem::FiniteElement* fe_rho = el[1];
const mfem::FiniteElement *fe_v = el[0];
const mfem::FiniteElement *fe_rho = el[1];
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const mfem::Vector& v_dofs = *elfun[0];
const mfem::Vector &v_dofs = *elfun[0];
mfem::Vector& r_v = *elvec[0];
mfem::Vector &r_v = *elvec[0];
r_v.SetSize(dof_v * dim);
r_v = 0.0;
if (elvec[1]) {
@@ -43,12 +49,13 @@ namespace mean_field::integrators {
mfem::DenseMatrix dshape_v_ref(dof_v, dim), dshape_v_phys(dof_v, dim);
const mfem::IntegrationRule* ir = &mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder() + m_quad_boost);
const mfem::IntegrationRule *ir = &mfem::IntRules.Get(
fe_v->GetGeomType(), 2 * fe_v->GetOrder() + m_quad_boost
);
for (int q = 0; q < ir->GetNPoints(); ++q) {
const mfem::IntegrationPoint& ip = ir->IntPoint(q);
const mfem::IntegrationPoint &ip = ir->IntPoint(q);
Tr.SetIntPoint(&ip);
auto [J_inv, detJ, weight] = m_map.GetQuadratureContext(Tr, ip);
@@ -57,12 +64,13 @@ namespace mean_field::integrators {
mfem::Mult(dshape_v_ref, J_inv, dshape_v_phys);
// ∇v(c,j) = δj v_c
mfem::DenseMatrix grad_v(dim, dim); grad_v = 0.0;
mfem::DenseMatrix grad_v(dim, dim);
grad_v = 0.0;
for (int n = 0; n < dof_v; ++n) {
for (int c = 0; c < dim; ++c) {
const double vn_c = v_dofs(n + c * dof_v);
for (int j = 0; j < dim; ++j) {
grad_v( c, j) += vn_c * dshape_v_phys(n, j);
grad_v(c, j) += vn_c * dshape_v_phys(n, j);
}
}
}
@@ -80,7 +88,8 @@ namespace mean_field::integrators {
double acc = 0.0;
for (int j = 0; j < dim; ++j) {
double D_cj = grad_v(c, j) + grad_v(j, c);
if (c == j) D_cj -= (2.0 / 3.0) * div_v;
if (c == j)
D_cj -= (2.0 / 3.0) * div_v;
acc += dshape_v_phys(i, j) * D_cj;
}
r_v(i + c * dof_v) += mu_w * acc;
@@ -95,27 +104,33 @@ namespace mean_field::integrators {
const mfem::Array<const mfem::Vector *> &elfun,
const mfem::Array2D<mfem::DenseMatrix *> &elmats
) {
const mfem::FiniteElement* fe_v = el[0];
const mfem::FiniteElement* fe_rho = el[1];
const mfem::FiniteElement *fe_v = el[0];
const mfem::FiniteElement *fe_rho = el[1];
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
const int dof_v = fe_v->GetDof();
const int dof_rho = fe_rho->GetDof();
const int dim = Tr.GetSpaceDim();
mfem::DenseMatrix* dv_dv = elmats(0, 0);
mfem::DenseMatrix* dv_drho = elmats(0, 1);
mfem::DenseMatrix *dv_dv = elmats(0, 0);
mfem::DenseMatrix *dv_drho = elmats(0, 1);
if (dv_drho) *dv_drho =0.0;
if (dv_dv) *dv_dv = 0.0;
if (elmats(1, 0)) *elmats(1, 0) = 0.0;
if (elmats(1, 1)) *elmats(1, 1) = 0.0;
if (!dv_dv) return;
if (dv_drho)
*dv_drho = 0.0;
if (dv_dv)
*dv_dv = 0.0;
if (elmats(1, 0))
*elmats(1, 0) = 0.0;
if (elmats(1, 1))
*elmats(1, 1) = 0.0;
if (!dv_dv)
return;
mfem::DenseMatrix dshape_v_ref(dof_v, dim), dshape_v_phys(dof_v, dim);
const mfem::IntegrationRule* ir = &mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder());
const mfem::IntegrationRule *ir =
&mfem::IntRules.Get(fe_v->GetGeomType(), 2 * fe_v->GetOrder());
for (int q = 0; q < ir->GetNPoints(); ++q) {
const mfem::IntegrationPoint& ip = ir->IntPoint(q);
const mfem::IntegrationPoint &ip = ir->IntPoint(q);
Tr.SetIntPoint(&ip);
auto [J_inv, detJ, weight] = m_map.GetQuadratureContext(Tr, ip);
@@ -137,20 +152,20 @@ namespace mean_field::integrators {
for (int d = 0; d < dim; ++d) {
const int col = n + d * dof_v;
double val = 0.0;
if (c == d) val += dot_grad;
double val = 0.0;
if (c == d)
val += dot_grad;
val += dshape_v_phys(i, d) * dshape_v_phys(n, c);
val -= (2.0 / 3.0) * dshape_v_phys(i, c) * dshape_v_phys(n, d);
val -= (2.0 / 3.0) * dshape_v_phys(i, c) *
dshape_v_phys(n, d);
(*dv_dv)(row, col) += mu_w * val;
}
}
}
}
}
}
}
} // namespace mean_field::integrators

View File

@@ -10,30 +10,38 @@ namespace mean_field::mapping {
//////////////////////////////
MappedScalarCoefficient::MappedScalarCoefficient(
const DomainMapper &map,
mfem::Coefficient &coeff,
Coefficient &coeff,
const COORDINATE_SPACE coord_space
) : m_map(map),
m_coeff(coeff),
m_coord_space(coord_space) {};
)
: m_map(map),
m_coeff(coeff),
m_coord_space(coord_space) { };
double MappedScalarCoefficient::Eval(mfem::ElementTransformation &T, const mfem::IntegrationPoint &ip) {
double MappedScalarCoefficient::Eval(
mfem::ElementTransformation &T,
const mfem::IntegrationPoint &ip
) {
T.SetIntPoint(&ip);
double f_val = 0.0;
switch (m_coord_space) {
case COORDINATE_SPACE::PHYSICAL: {
f_val = eval_at_point(m_coeff, T, ip);
const double detJ = m_map.ComputeDetJ(T, ip);
return f_val * fabs(detJ);
}
case COORDINATE_SPACE::REFERENCE: {
f_val = m_coeff.Eval(T, ip);
return f_val;
}
case COORDINATE_SPACE::PHYSICAL: {
f_val = eval_at_point(m_coeff, T, ip);
const double detJ = m_map.ComputeDetJ(T, ip);
return f_val * fabs(detJ);
}
case COORDINATE_SPACE::REFERENCE: {
f_val = m_coeff.Eval(T, ip);
return f_val;
}
}
}
double MappedScalarCoefficient::eval_at_point(mfem::Coefficient &c, mfem::ElementTransformation &T, const mfem::IntegrationPoint &ip) {
double MappedScalarCoefficient::eval_at_point(
Coefficient &c,
mfem::ElementTransformation &T,
const mfem::IntegrationPoint &ip
) {
return c.Eval(T, ip);
}
@@ -45,22 +53,26 @@ namespace mean_field::mapping {
const DomainMapper &map,
mfem::Coefficient &sigma,
const int dim
) : mfem::MatrixCoefficient(dim),
m_map(map),
m_scalar(&sigma),
m_tensor(nullptr) {
};
)
: MatrixCoefficient(dim),
m_map(map),
m_scalar(&sigma),
m_tensor(nullptr) { };
MappedDiffusionCoefficient::MappedDiffusionCoefficient(
const DomainMapper &map,
mfem::MatrixCoefficient &sigma
) : mfem::MatrixCoefficient(sigma.GetHeight()),
m_map(map),
m_scalar(nullptr),
m_tensor(&sigma) {
};
MatrixCoefficient &sigma
)
: MatrixCoefficient(sigma.GetHeight()),
m_map(map),
m_scalar(nullptr),
m_tensor(&sigma) { };
void MappedDiffusionCoefficient::Eval(mfem::DenseMatrix &K, mfem::ElementTransformation &T, const mfem::IntegrationPoint &ip) {
void MappedDiffusionCoefficient::Eval(
mfem::DenseMatrix &K,
mfem::ElementTransformation &T,
const mfem::IntegrationPoint &ip
) {
const int dim = height;
T.SetIntPoint(&ip);
@@ -90,13 +102,17 @@ namespace mean_field::mapping {
///////////////////////////////
MappedVectorCoefficient::MappedVectorCoefficient(
const DomainMapper &map,
mfem::VectorCoefficient &coeff
) : mfem::VectorCoefficient(coeff.GetVDim()),
m_map(map),
m_coeff(coeff) {
};
VectorCoefficient &coeff
)
: VectorCoefficient(coeff.GetVDim()),
m_map(map),
m_coeff(coeff) { };
void MappedVectorCoefficient::Eval(mfem::Vector &V, mfem::ElementTransformation &T, const mfem::IntegrationPoint &ip) {
void MappedVectorCoefficient::Eval(
mfem::Vector &V,
mfem::ElementTransformation &T,
const mfem::IntegrationPoint &ip
) {
const int dim = vdim;
T.SetIntPoint(&ip);
@@ -118,24 +134,32 @@ namespace mean_field::mapping {
PhysicalPositionFunctionCoefficient::PhysicalPositionFunctionCoefficient(
const DomainMapper &map,
Func f // std::function<double(const mfem::Vector&)>
) : m_f(std::move(f)),
m_map(map) {};
)
: m_f(std::move(f)),
m_map(map) { };
double PhysicalPositionFunctionCoefficient::Eval(mfem::ElementTransformation &T, const mfem::IntegrationPoint &ip) {
double PhysicalPositionFunctionCoefficient::Eval(
mfem::ElementTransformation &T,
const mfem::IntegrationPoint &ip
) {
T.SetIntPoint(&ip);
mfem::Vector x;
m_map.GetPhysicalPoint(T, ip, x);
return m_f(x);
}
MappedHDivMassCoefficient::MappedHDivMassCoefficient(const DomainMapper& map, const int dim)
: mfem::MatrixCoefficient(dim),
m_map(map) {}
MappedHDivMassCoefficient::MappedHDivMassCoefficient(
const DomainMapper &map,
const int dim
)
: MatrixCoefficient(dim),
m_map(map) {
}
void MappedHDivMassCoefficient::Eval(
mfem::DenseMatrix& matrix,
mfem::ElementTransformation& transformation,
const mfem::IntegrationPoint& integration_point
mfem::DenseMatrix &matrix,
mfem::ElementTransformation &transformation,
const mfem::IntegrationPoint &integration_point
) {
transformation.SetIntPoint(&integration_point);
@@ -144,9 +168,12 @@ namespace mean_field::mapping {
const double map_determinant = map_jacobian.Det();
MFEM_VERIFY(map_determinant > 0.0, "Domain mapping has a non-positive Jacobian determinant.");
MFEM_VERIFY(
map_determinant > 0.0,
"Domain mapping has a non-positive Jacobian determinant."
);
mfem::MultAtB(map_jacobian, map_jacobian, matrix);
matrix *= 1.0 / std::abs(map_determinant);
}
}
} // namespace mean_field::mapping

View File

@@ -0,0 +1,266 @@
module;
#include <cmath>
#include <mfem.hpp>
#include <stdexcept>
module mean_field;
namespace {
bool vector_is_finite(const mfem::Vector &vector) {
for (int i = 0; i < vector.Size(); ++i) {
if (!std::isfinite(vector(i)))
return false;
}
return true;
}
bool matrix_is_finite(const mfem::DenseMatrix &matrix) {
for (int i = 0; i < matrix.Height(); ++i) {
for (int j = 0; j < matrix.Width(); ++j) {
if (!std::isfinite(matrix(i, j)))
return false;
}
}
return true;
}
} // namespace
namespace mean_field::mapping::compactification {
KelvinCompactification::KelvinCompactification(
options::KelvinCompactificationOptions options
)
: m_options(options) {
if (!std::isfinite(m_options.r_star_ref) ||
!std::isfinite(m_options.r_inf_ref)) {
throw std::invalid_argument(
"Kelvin compactification radii must be finite."
);
}
if (m_options.r_star_ref <= 0.0 ||
m_options.r_inf_ref <= m_options.r_star_ref) {
throw std::invalid_argument(
"Kelvin compactification requires 0 < r_star_ref < r_inf_ref."
);
}
if (!std::isfinite(m_options.coordinate_tolerance) ||
m_options.coordinate_tolerance < 0.0 ||
m_options.coordinate_tolerance >= 1.0) {
throw std::invalid_argument(
"Kelvin compactification coordinate tolerance must be finite "
"and lie "
"in [0, 1)."
);
}
}
MappingStatus KelvinCompactification::ComputeRadialFactors(
const double compactification_coordinate,
RadialFactors &factors
) const {
if (!std::isfinite(compactification_coordinate))
return MappingStatus::non_finite_input;
const double tolerance = m_options.coordinate_tolerance;
if (compactification_coordinate < -tolerance ||
compactification_coordinate > 1.0 + tolerance) {
return MappingStatus::outside_reference_domain;
}
double coordinate = compactification_coordinate;
if (coordinate < 0.0)
coordinate = 0.0;
if (coordinate >= 1.0 - tolerance) {
return MappingStatus::at_compactified_infinity;
}
const double radial_extent = m_options.r_inf_ref - m_options.r_star_ref;
const double computational_radius =
m_options.r_star_ref + coordinate * radial_extent;
if (!std::isfinite(computational_radius) ||
computational_radius <= 0.0) {
return MappingStatus::invalid_reference_radius;
}
const double one_minus_coordinate = 1.0 - coordinate;
const double denominator = computational_radius * one_minus_coordinate;
if (!std::isfinite(denominator) || denominator <= 0.0) {
return MappingStatus::non_finite_result;
}
const double scale = m_options.r_star_ref / denominator;
const double scale_derivative =
scale *
(1.0 / one_minus_coordinate - radial_extent / computational_radius);
if (!std::isfinite(scale) || !std::isfinite(scale_derivative)) {
return MappingStatus::non_finite_result;
}
factors.coordinate = coordinate;
factors.computational_radius = computational_radius;
factors.scale = scale;
factors.scale_derivative = scale_derivative;
return MappingStatus::valid;
}
MappingStatus KelvinCompactification::Evaluate(
const ExteriorMapInput &input,
ExteriorMapResult &result
) const {
const int dimension = input.reference_position.Size();
if (dimension <= 0 || input.displaced_position.Size() != dimension ||
input.compactification_coordinate_gradient.Size() != dimension) {
return MappingStatus::invalid_dimension;
}
if (input.displacement_jacobian.Height() != dimension ||
input.displacement_jacobian.Width() != dimension) {
return MappingStatus::invalid_dimension;
}
if (!vector_is_finite(input.reference_position) ||
!vector_is_finite(input.displaced_position) ||
!vector_is_finite(input.compactification_coordinate_gradient) ||
!matrix_is_finite(input.displacement_jacobian)) {
return MappingStatus::non_finite_input;
}
RadialFactors factors;
const MappingStatus factor_status =
ComputeRadialFactors(input.compactification_coordinate, factors);
if (factor_status != MappingStatus::valid)
return factor_status;
result.physical_position.SetSize(dimension);
result.mapping_jacobian.SetSize(dimension, dimension);
for (int i = 0; i < dimension; ++i) {
result.physical_position(i) =
factors.scale * input.displaced_position(i);
for (int j = 0; j < dimension; ++j) {
const double scale_gradient =
factors.scale_derivative *
input.compactification_coordinate_gradient(j);
result.mapping_jacobian(i, j) =
factors.scale * input.displacement_jacobian(i, j) +
input.displaced_position(i) * scale_gradient;
}
}
if (!vector_is_finite(result.physical_position) ||
!matrix_is_finite(result.mapping_jacobian)) {
return MappingStatus::non_finite_result;
}
const double mapping_determinant = result.mapping_jacobian.Det();
if (!std::isfinite(mapping_determinant))
return MappingStatus::non_finite_result;
if (mapping_determinant <= 0.0)
return MappingStatus::non_positive_determinant;
return MappingStatus::valid;
}
MappingStatus KelvinCompactification::EvaluateVariation(
const ExteriorMapInput &input,
const ExteriorMapResult &result,
const ExteriorMapDirection &direction,
ExteriorMapVariation &variation
) const {
const int dimension = input.reference_position.Size();
if (dimension <= 0 || input.displaced_position.Size() != dimension ||
input.compactification_coordinate_gradient.Size() != dimension) {
return MappingStatus::invalid_dimension;
}
if (input.displacement_jacobian.Height() != dimension ||
input.displacement_jacobian.Width() != dimension) {
return MappingStatus::invalid_dimension;
}
if (result.physical_position.Size() != dimension ||
result.mapping_jacobian.Height() != dimension ||
result.mapping_jacobian.Width() != dimension) {
return MappingStatus::invalid_dimension;
}
if (direction.displaced_position_variation.Size() != dimension ||
direction.displacement_jacobian_variation.Height() != dimension ||
direction.displacement_jacobian_variation.Width() != dimension) {
return MappingStatus::invalid_dimension;
}
if (!vector_is_finite(input.reference_position) ||
!vector_is_finite(input.displaced_position) ||
!vector_is_finite(input.compactification_coordinate_gradient) ||
!matrix_is_finite(input.displacement_jacobian)) {
return MappingStatus::non_finite_input;
}
if (!vector_is_finite(result.physical_position) ||
!matrix_is_finite(result.mapping_jacobian) ||
!vector_is_finite(direction.displaced_position_variation) ||
!matrix_is_finite(direction.displacement_jacobian_variation)) {
return MappingStatus::non_finite_input;
}
RadialFactors factors;
const MappingStatus factor_status =
ComputeRadialFactors(input.compactification_coordinate, factors);
if (factor_status != MappingStatus::valid)
return factor_status;
variation.physical_position_variation.SetSize(dimension);
variation.mapping_jacobian_variation.SetSize(dimension, dimension);
for (int i = 0; i < dimension; ++i) {
variation.physical_position_variation(i) =
factors.scale * direction.displaced_position_variation(i);
for (int j = 0; j < dimension; ++j) {
const double scale_gradient =
factors.scale_derivative *
input.compactification_coordinate_gradient(j);
variation.mapping_jacobian_variation(i, j) =
factors.scale *
direction.displacement_jacobian_variation(i, j) +
direction.displaced_position_variation(i) * scale_gradient;
}
}
if (!vector_is_finite(variation.physical_position_variation) ||
!matrix_is_finite(variation.mapping_jacobian_variation)) {
return MappingStatus::non_finite_result;
}
return MappingStatus::valid;
}
std::string_view KelvinCompactification::GetName() const noexcept {
return "KelvinCompactification";
}
double KelvinCompactification::GetReferenceStellarRadius() const noexcept {
return m_options.r_star_ref;
}
double KelvinCompactification::GetReferenceInfinityRadius() const noexcept {
return m_options.r_inf_ref;
}
double KelvinCompactification::GetCoordinateTolerance() const noexcept {
return m_options.coordinate_tolerance;
}
} // namespace mean_field::mapping::compactification

View File

@@ -2,26 +2,52 @@ module;
#include <mfem.hpp>
module mean_field;
import :mapping.types;
namespace {
double get_positive_map_jacobian(
const mean_field::mapping::DomainMapper &domain_mapper,
mfem::ElementTransformation &transformation,
const mfem::IntegrationPoint &integration_point,
mfem::DenseMatrix &map_jacobian
) {
transformation.SetIntPoint(&integration_point);
domain_mapper.ComputeJacobian(transformation, map_jacobian);
const double map_determinant = map_jacobian.Det();
MFEM_VERIFY(
map_determinant > 0.0,
"Domain mapping has a non-positive Jacobian determinant."
);
return map_determinant;
}
} // namespace
namespace mean_field::mapping {
DomainMapper::DomainMapper(
const double r_star_ref,
const double r_inf_ref
) : m_d(nullptr),
m_r_star_ref(r_star_ref),
m_r_inf_ref(r_inf_ref) {
)
: m_d(nullptr),
m_r_star_ref(r_star_ref),
m_r_inf_ref(r_inf_ref) {
InitAllScratchSpaces();
CalcIsIdentity() ? m_displacement_is_identity = true
: m_displacement_is_identity = false;
}
DomainMapper::DomainMapper(
const mfem::GridFunction &d,
const double r_star_ref,
const double r_inf_ref
) : m_d(&d),
m_dim(d.FESpace()->GetMesh()->Dimension()),
m_r_star_ref(r_star_ref),
m_r_inf_ref(r_inf_ref) {
)
: m_d(&d),
m_dim(d.FESpace()->GetMesh()->Dimension()),
m_r_star_ref(r_star_ref),
m_r_inf_ref(r_inf_ref) {
InitAllScratchSpaces();
CalcIsIdentity() ? m_displacement_is_identity = true
: m_displacement_is_identity = false;
}
bool DomainMapper::is_vacuum(const mfem::ElementTransformation &T) const {
@@ -29,7 +55,9 @@ namespace mean_field::mapping {
return T.Attribute == m_vacuum_attr;
} else if (T.ElementType == mfem::ElementTransformation::BDR_ELEMENT) {
return T.Attribute == m_vacuum_attr - 1;
// TODO: In a more robust code this should really be read from the stroid API to ensure that the vacuum boundary is really 1 - the vacuum material attribute
// TODO: In a more robust code this should really be read from the
// stroid API to ensure that the vacuum boundary is really 1 - the
// vacuum material attribute
}
return false;
}
@@ -37,28 +65,69 @@ namespace mean_field::mapping {
void DomainMapper::SetDisplacement(const mfem::GridFunction &d) {
if (m_dim != d.FESpace()->GetMesh()->Dimension()) {
const std::string err_msg = std::format(
"Dimension mismatch: DomainMapper is initialized for dimension {}, but provided displacement field has dimension {}.",
m_dim, d.FESpace()->GetMesh()->Dimension());
"Dimension mismatch: DomainMapper is initialized for dimension "
"{}, "
"but provided displacement field has "
"dimension {}.",
m_dim, d.FESpace()->GetMesh()->Dimension()
);
throw std::invalid_argument(err_msg);
}
m_d = &d;
InvalidateCache();
CalcIsIdentity() ? m_displacement_is_identity = true
: m_displacement_is_identity = false;
}
bool DomainMapper::IsIdentity() const {
return (m_d == nullptr);
bool DomainMapper::HasCompactification() const noexcept {
return std::isfinite(m_r_star_ref) && std::isfinite(m_r_inf_ref) &&
m_r_star_ref > 0.0 && m_r_inf_ref > m_r_star_ref &&
m_xi_clamp > 0.0 && m_xi_clamp < 1.0;
}
bool DomainMapper::HasDisplacementField() const noexcept {
return m_d != nullptr;
}
bool DomainMapper::CalcIsIdentity() const {
if (m_d == nullptr) {
return true;
}
const int local_identity = m_d->Normlinf() == 0.0 ? 1 : 0;
const auto *parallel_displacement =
dynamic_cast<const mfem::ParGridFunction *>(m_d);
if (parallel_displacement == nullptr) {
return local_identity == 1;
}
int global_identity = 0;
MPI_Allreduce(
&local_identity, &global_identity, 1, MPI_INT, MPI_MIN,
parallel_displacement->ParFESpace()->GetComm()
);
return global_identity == 1;
}
void DomainMapper::ResetDisplacement() {
m_d = nullptr;
InvalidateCache();
CalcIsIdentity() ? m_displacement_is_identity = true
: m_displacement_is_identity = false;
}
void DomainMapper::ComputeJacobian(mfem::ElementTransformation &T, mfem::DenseMatrix &J) const {
void DomainMapper::ComputeJacobian(
mfem::ElementTransformation &T,
mfem::DenseMatrix &J
) const {
J.SetSize(m_dim, m_dim);
J = 0.0;
J = 0.0;
m_J_D = 0.0;
if (IsIdentity()) {
if (!HasDisplacementField()) {
for (int i = 0; i < m_dim; ++i) {
m_J_D(i, i) = 1.0; // Identity mapping
}
@@ -76,7 +145,7 @@ namespace mean_field::mapping {
if (is_vacuum(T)) {
T.Transform(T.GetIntPoint(), m_x_ref);
if (IsIdentity()) {
if (!HasDisplacementField()) {
m_x_disp = m_x_ref;
} else {
m_shape.SetSize(m_fe->GetDof());
@@ -91,15 +160,22 @@ namespace mean_field::mapping {
}
}
double DomainMapper::ComputeDetJ(mfem::ElementTransformation &T, const mfem::IntegrationPoint &ip) const {
if (IsIdentity() && !is_vacuum(T)) return 1.0; // If no mapping, the determinant of the Jacobian is 1
double DomainMapper::ComputeDetJ(
mfem::ElementTransformation &T,
const mfem::IntegrationPoint &ip
) const {
if (!HasDisplacementField() && !is_vacuum(T))
return 1.0; // If no mapping, the determinant of the Jacobian is 1
T.SetIntPoint(&ip);
mfem::DenseMatrix J;
ComputeJacobian(T, J);
return J.Det();
}
void DomainMapper::ComputeMappedDiffusionTensor(mfem::ElementTransformation &T, mfem::DenseMatrix &D) const {
void DomainMapper::ComputeMappedDiffusionTensor(
mfem::ElementTransformation &T,
mfem::DenseMatrix &D
) const {
ComputeJacobian(T, m_J_temp);
const double detJ = m_J_temp.Det();
mfem::CalcInverse(m_J_temp, m_JInv_temp);
@@ -108,41 +184,56 @@ namespace mean_field::mapping {
D *= fabs(detJ);
}
void DomainMapper::ComputeInverseJacobian(mfem::ElementTransformation &T, mfem::DenseMatrix &JInv) const {
void DomainMapper::ComputeInverseJacobian(
mfem::ElementTransformation &T,
mfem::DenseMatrix &JInv
) const {
ComputeJacobian(T, m_J_temp);
JInv.SetSize(m_dim, m_dim);
mfem::CalcInverse(m_J_temp, JInv);
}
DomainMapper::VolumeQuadratureContext DomainMapper::GetQuadratureContext(mfem::ElementTransformation &T, const mfem::IntegrationPoint &ip) const {
VolumeQuadratureContext DomainMapper::GetQuadratureContext(
mfem::ElementTransformation &T,
const mfem::IntegrationPoint &ip
) const {
const int dim = T.GetSpaceDim();
mfem::DenseMatrix J_map(dim, dim), J_inv(dim, dim);
ComputeJacobian(T, J_map);
mfem::DenseMatrix J_full(dim, dim);
mfem::Mult(J_map, T.Jacobian(), J_full);
mfem::CalcInverse(J_full, J_inv);
const double detJ = std::fabs(ComputeDetJ(T, ip));
const double detJ = std::fabs(ComputeDetJ(T, ip));
const double weight = ip.weight * T.Weight() * detJ;
return {.J_inv = J_inv, .detJ = detJ, .weight = weight};
}
DomainMapper::FaceQuadratureContext DomainMapper::GetFaceQuadratureContext(mfem::FaceElementTransformations &T, const mfem::IntegrationPoint &ip) const {
FaceQuadratureContext DomainMapper::GetFaceQuadratureContext(
mfem::FaceElementTransformations &T,
const mfem::IntegrationPoint &ip
) const {
const int dim = T.GetSpaceDim();
T.SetAllIntPoints(&ip);
mfem::Vector n_raw(dim);
mfem::CalcOrtho(T.Jacobian(), n_raw);
if (IsIdentity()) {
if (!HasDisplacementField() && !is_vacuum(T)) {
const double n_raw_mag = n_raw.Norml2();
mfem::Vector n_unit(dim);
n_unit = n_raw;
n_unit /= n_raw_mag;
return FaceQuadratureContext{.normal=n_unit, .ds=ip.weight * n_raw_mag, .v_dot_n_scale = 1.0};
return FaceQuadratureContext{
.normal = n_unit,
.ds = ip.weight * n_raw_mag,
.v_dot_n_scale = 1.0
};
}
// Nanson's Formula (https://en.wikiversity.org/wiki/Continuum_mechanics/Volume_change_and_area_change)
// Since the displacement field lives in H1 it should be irrelevant if we pick Elem1 or Elem2
// Nanson's Formula
// (https://en.wikiversity.org/wiki/Continuum_mechanics/Volume_change_and_area_change)
// Since the displacement field lives in H1 it should be irrelevant if
// we pick Elem1 or Elem2
mfem::DenseMatrix J_map(dim, dim);
ComputeJacobian(*T.Elem1, J_map);
const double detJ_map = J_map.Det();
@@ -162,18 +253,21 @@ namespace mean_field::mapping {
const double n_raw_mag = n_raw.Norml2();
return FaceQuadratureContext{
.normal = n_unit,
.ds = ip.weight * n_raw_mag,
.normal = n_unit,
.ds = ip.weight * n_raw_mag,
.v_dot_n_scale = n_phys_mag / n_raw_mag
};
}
void DomainMapper::GetPhysicalPoint(mfem::ElementTransformation &T, const mfem::IntegrationPoint &ip, mfem::Vector &x_phys) const {
void DomainMapper::GetPhysicalPoint(
mfem::ElementTransformation &T,
const mfem::IntegrationPoint &ip,
mfem::Vector &x_phys
) const {
x_phys.SetSize(m_dim);
T.Transform(ip, m_x_ref);
if (IsIdentity()) {
if (!HasDisplacementField()) {
x_phys = m_x_ref;
} else {
UpdateElementCache(T);
@@ -189,11 +283,91 @@ namespace mean_field::mapping {
}
}
void DomainMapper::GetVectorValue(const int i, const mfem::IntegrationPoint &ip, mfem::Vector &val) const {
void DomainMapper::GetVectorValue(
const int i,
const mfem::IntegrationPoint &ip,
mfem::Vector &val
) const {
m_d->GetVectorValue(i, ip, val);
}
const mfem::GridFunction *DomainMapper::GetDisplacement() const { return m_d; }
void DomainMapper::MapHDivFluxToPhysical(
mfem::ElementTransformation &transformation,
const mfem::IntegrationPoint &integration_point,
const mfem::Vector &reference_flux,
mfem::Vector &physical_flux
) const {
MFEM_VERIFY(
reference_flux.Size() == m_dim,
"The reference H(div) flux has the wrong dimension."
);
mfem::DenseMatrix map_jacobian(m_dim, m_dim);
const double map_determinant = get_positive_map_jacobian(
*this, transformation, integration_point, map_jacobian
);
mfem::Vector mapped_flux(m_dim);
map_jacobian.Mult(reference_flux, mapped_flux);
mapped_flux /= map_determinant;
physical_flux = mapped_flux;
}
void DomainMapper::MapPhysicalFluxToHDivReference(
mfem::ElementTransformation &transformation,
const mfem::IntegrationPoint &integration_point,
const mfem::Vector &physical_flux,
mfem::Vector &reference_flux
) const {
MFEM_VERIFY(
physical_flux.Size() == m_dim,
"The physical flux has the wrong dimension."
);
mfem::DenseMatrix map_jacobian(m_dim, m_dim);
const double map_determinant = get_positive_map_jacobian(
*this, transformation, integration_point, map_jacobian
);
mfem::DenseMatrix inverse_map_jacobian(m_dim, m_dim);
mfem::CalcInverse(map_jacobian, inverse_map_jacobian);
mfem::Vector mapped_flux(m_dim);
inverse_map_jacobian.Mult(physical_flux, mapped_flux);
mapped_flux *= map_determinant;
reference_flux = mapped_flux;
}
void DomainMapper::MapReferenceGradientToPhysical(
mfem::ElementTransformation &transformation,
const mfem::IntegrationPoint &integration_point,
const mfem::Vector &reference_gradient,
mfem::Vector &physical_gradient
) const {
MFEM_VERIFY(
reference_gradient.Size() == m_dim,
"The reference gradient has the wrong dimension."
);
mfem::DenseMatrix map_jacobian(m_dim, m_dim);
get_positive_map_jacobian(
*this, transformation, integration_point, map_jacobian
);
mfem::DenseMatrix inverse_map_jacobian(m_dim, m_dim);
mfem::CalcInverse(map_jacobian, inverse_map_jacobian);
mfem::Vector mapped_gradient(m_dim);
inverse_map_jacobian.MultTranspose(reference_gradient, mapped_gradient);
physical_gradient = mapped_gradient;
}
const mfem::GridFunction *DomainMapper::GetDisplacement() const {
return m_d;
}
double DomainMapper::GetPhysInfRadius() const {
return 1.0 - m_xi_clamp;
@@ -208,11 +382,12 @@ namespace mean_field::mapping {
}
double DomainMapper::GetCacheHitRate() const {
return (static_cast<double>(m_cache_hits)) / static_cast<double>(m_cache_misses + m_cache_hits);
return (static_cast<double>(m_cache_hits)) /
static_cast<double>(m_cache_misses + m_cache_hits);
}
void DomainMapper::ResetCacheStats() const {
m_cache_hits = 0;
m_cache_hits = 0;
m_cache_misses = 0;
}
@@ -225,28 +400,36 @@ namespace mean_field::mapping {
m_d_val.SetSize(m_dim);
}
void DomainMapper::ApplyKelvinMapping(const mfem::Vector &x_ref, mfem::Vector &x_phys) const {
void DomainMapper::ApplyKelvinMapping(
const mfem::Vector &x_ref,
mfem::Vector &x_phys
) const {
const double r_ref = x_ref.Norml2();
double xi = (r_ref - m_r_star_ref) / (m_r_inf_ref - m_r_star_ref);
xi = std::clamp(xi, 0.0, m_xi_clamp);
xi = std::clamp(xi, 0.0, m_xi_clamp);
const double factor = m_r_star_ref / (r_ref * (1 - xi));
x_phys *= factor;
}
void DomainMapper::ComputeKelvinJacobian(const mfem::Vector &x_ref, const mfem::Vector &x_disp, const mfem::DenseMatrix &J_D,
mfem::DenseMatrix &J) const {
const double r_ref = x_ref.Norml2();
void DomainMapper::ComputeKelvinJacobian(
const mfem::Vector &x_ref,
const mfem::Vector &x_disp,
const mfem::DenseMatrix &J_D,
mfem::DenseMatrix &J
) const {
const double r_ref = x_ref.Norml2();
const double delta_R = m_r_inf_ref - m_r_star_ref;
double xi = (r_ref - m_r_star_ref) / delta_R;
xi = std::clamp(xi, 0.0, m_xi_clamp);
double xi = (r_ref - m_r_star_ref) / delta_R;
xi = std::clamp(xi, 0.0, m_xi_clamp);
const double denom = 1.0 - xi;
const double denom = 1.0 - xi;
const double k = m_r_star_ref / (r_ref * denom);
const double k = m_r_star_ref / (r_ref * denom);
const double dk_dr = m_r_star_ref * ((1.0 / (delta_R * r_ref * denom * denom)) - (
1.0 / (r_ref * r_ref * denom)));
const double dk_dr =
m_r_star_ref * ((1.0 / (delta_R * r_ref * denom * denom)) -
(1.0 / (r_ref * r_ref * denom)));
J.SetSize(m_dim, m_dim);
const double outer_factor = dk_dr / r_ref;
@@ -262,13 +445,17 @@ namespace mean_field::mapping {
m_cached_elem_id = -1;
}
void DomainMapper::UpdateElementCache(const mfem::ElementTransformation &T) const {
if (IsIdentity()) return;
void DomainMapper::UpdateElementCache(
const mfem::ElementTransformation &T
) const {
if (!HasDisplacementField())
return;
if (T.ElementNo != m_cached_elem_id || T.ElementType != m_cached_elem_type) {
if (T.ElementNo != m_cached_elem_id ||
T.ElementType != m_cached_elem_type) {
m_cache_misses++;
m_cached_elem_id = T.ElementNo;
m_cached_elem_type = T.ElementType;
m_cached_elem_id = T.ElementNo;
m_cached_elem_type = T.ElementType;
const mfem::FiniteElementSpace *fes = m_d->FESpace();
mfem::Array<int> vdofs;
@@ -291,4 +478,4 @@ namespace mean_field::mapping {
m_cache_hits++;
}
}
}
} // namespace mean_field::mapping

View File

@@ -0,0 +1,916 @@
module;
#include <cmath>
#include <memory>
#include <mfem.hpp>
#include <stdexcept>
#include <utility>
module mean_field;
import :mapping.types;
import :mapping.compactification;
import :utils.user;
namespace {
bool vector_is_finite(const mfem::Vector &vector) {
for (int i = 0; i < vector.Size(); ++i) {
if (!std::isfinite(vector(i)))
return false;
}
return true;
}
bool matrix_is_finite(const mfem::DenseMatrix &matrix) {
for (int i = 0; i < matrix.Height(); ++i) {
for (int j = 0; j < matrix.Width(); ++j) {
if (!std::isfinite(matrix(i, j)))
return false;
}
}
return true;
}
} // namespace
namespace mean_field::mapping {
ElementCompactificationData::ElementCompactificationData(
const mfem::FiniteElement &element,
const mfem::Vector &dofs
)
: m_element(&element),
m_dofs(dofs) {
if (element.GetRangeType() != mfem::FiniteElement::SCALAR) {
throw std::invalid_argument(
"Compactification coordinate requires a scalar finite element."
);
}
if (element.GetMapType() != mfem::FiniteElement::VALUE) {
throw std::invalid_argument(
"Compactification coordinate requires a value-mapped scalar "
"finite "
"element."
);
}
if (element.GetDerivType() != mfem::FiniteElement::GRAD) {
throw std::invalid_argument(
"Compactification coordinate finite element must provide a "
"gradient."
);
}
if (element.GetDof() <= 0) {
throw std::invalid_argument(
"Compactification coordinate finite element has no degrees of "
"freedom."
);
}
if (dofs.Size() != element.GetDof()) {
throw std::invalid_argument(
"Compactification coordinate DOF count does not match its "
"finite "
"element."
);
}
}
const mfem::FiniteElement &
ElementCompactificationData::GetElement() const noexcept {
return *m_element;
}
const mfem::Vector &ElementCompactificationData::GetDofs() const noexcept {
return m_dofs;
}
int ElementCompactificationData::GetDofCount() const noexcept {
return m_dofs.Size();
}
ElementDisplacementData::ElementDisplacementData(
const mfem::FiniteElement &element,
const mfem::Vector &displacement_dofs,
const mfem::Ordering::Type ordering
)
: m_element(&element),
m_dimension(0),
m_ordering(ordering) {
const int dof_count = element.GetDof();
if (dof_count <= 0)
throw std::invalid_argument(
"The displacement element must have at least one degree of "
"freedom."
);
if (displacement_dofs.Size() <= 0 ||
displacement_dofs.Size() % dof_count != 0) {
throw std::invalid_argument(
"The displacement vector size must be a positive multiple of "
"the "
"element degree-of-freedom count."
);
}
m_dimension = displacement_dofs.Size() / dof_count;
m_dof_matrix.SetSize(dof_count, m_dimension);
if (ordering == mfem::Ordering::byNODES) {
for (int component = 0; component < m_dimension; ++component) {
for (int i = 0; i < dof_count; ++i) {
m_dof_matrix(i, component) =
displacement_dofs(i + component * dof_count);
}
}
} else if (ordering == mfem::Ordering::byVDIM) {
for (int i = 0; i < dof_count; ++i) {
for (int component = 0; component < m_dimension; ++component) {
m_dof_matrix(i, component) =
displacement_dofs(component + i * m_dimension);
}
}
} else {
throw std::invalid_argument(
"Unsupported MFEM displacement ordering."
);
}
}
const mfem::FiniteElement &
ElementDisplacementData::GetElement() const noexcept {
return *m_element;
}
const mfem::DenseMatrix &
ElementDisplacementData::GetDofMatrix() const noexcept {
return m_dof_matrix;
}
int ElementDisplacementData::GetDimension() const noexcept {
return m_dimension;
}
int ElementDisplacementData::GetDofCount() const noexcept {
return m_element->GetDof();
}
mfem::Ordering::Type ElementDisplacementData::GetOrdering() const noexcept {
return m_ordering;
}
ElementDisplacementData ElementDisplacementDataFromElementVDofs(
const mfem::FiniteElement &element,
const mfem::Vector &displacement_dofs
) {
return ElementDisplacementData(
element, displacement_dofs, mfem::Ordering::byNODES
);
}
DomainMapperStateless::Workspace::Workspace(const int dimension) {
SetDimension(dimension);
}
void DomainMapperStateless::Workspace::SetDimension(const int dimension) {
if (dimension <= 0) {
throw std::invalid_argument(
"Domain mapping workspace dimension must be positive."
);
}
m_dimension = dimension;
m_field_value.SetSize(dimension);
m_field_jacobian.SetSize(dimension, dimension);
m_compactification_point.coordinate = 0.0;
m_compactification_point.coordinate_gradient.SetSize(dimension);
m_reference_normal.SetSize(dimension);
m_mapped_normal.SetSize(dimension);
m_full_element_jacobian.SetSize(dimension, dimension);
m_vector_temp.SetSize(dimension);
m_matrix_temp_1.SetSize(dimension, dimension);
m_matrix_temp_2.SetSize(dimension, dimension);
m_exterior_result.physical_position.SetSize(dimension);
m_exterior_result.mapping_jacobian.SetSize(dimension, dimension);
m_exterior_variation.physical_position_variation.SetSize(dimension);
m_exterior_variation.mapping_jacobian_variation.SetSize(
dimension, dimension
);
}
int DomainMapperStateless::Workspace::GetDimension() const noexcept {
return m_dimension;
}
DomainMapperStateless::DomainMapperStateless(
const utils::DomainMapperStatelessOptions options,
std::unique_ptr<const compactification::ExteriorDomainMap> exterior_map
)
: m_options(options),
m_exterior_map(std::move(exterior_map)) {
if (m_options.dimension <= 0)
throw std::invalid_argument(
"The domain-mapping dimension must be positive."
);
if (m_options.vacuum_element_attribute <= 0)
throw std::invalid_argument(
"The vacuum element attribute must be positive."
);
if (!m_exterior_map)
throw std::invalid_argument(
"DomainMapperStateless requires an exterior-domain mapping."
);
}
bool DomainMapperStateless::IsCompactifiedElement(
const mfem::ElementTransformation &transformation
) const noexcept {
return transformation.Attribute == m_options.vacuum_element_attribute;
}
int DomainMapperStateless::GetDimension() const noexcept {
return m_options.dimension;
}
int DomainMapperStateless::GetVacuumElementAttribute() const noexcept {
return m_options.vacuum_element_attribute;
}
const compactification::ExteriorDomainMap &
DomainMapperStateless::GetExteriorMap() const noexcept {
return *m_exterior_map;
}
void DomainMapperStateless::ValidateElementData(
const ElementMappingData &element_data
) const {
const ElementDisplacementData &displacement = element_data.displacement;
const ElementCompactificationData &compactification =
element_data.compactification;
if (displacement.GetDimension() != m_options.dimension) {
throw std::invalid_argument(
"Displacement field dimension does not match the domain mapper "
"dimension."
);
}
if (displacement.GetElement().GetDim() != m_options.dimension) {
throw std::invalid_argument(
"Displacement finite element dimension does not match the "
"domain "
"mapper dimension."
);
}
if (compactification.GetElement().GetDim() != m_options.dimension) {
throw std::invalid_argument(
"Compactification finite element dimension does not match the "
"domain "
"mapper dimension."
);
}
if (displacement.GetElement().GetGeomType() !=
compactification.GetElement().GetGeomType()) {
throw std::invalid_argument(
"Displacement and compactification finite elements have "
"different "
"geometries."
);
}
if (compactification.GetElement().GetRangeType() !=
mfem::FiniteElement::SCALAR) {
throw std::invalid_argument(
"Compactification coordinate requires a scalar finite element."
);
}
if (compactification.GetElement().GetMapType() !=
mfem::FiniteElement::VALUE) {
throw std::invalid_argument(
"Compactification coordinate requires a value-mapped finite "
"element."
);
}
if (compactification.GetElement().GetDerivType() !=
mfem::FiniteElement::GRAD) {
throw std::invalid_argument(
"Compactification coordinate finite element does not provide a "
"gradient."
);
}
if (compactification.GetDofCount() !=
compactification.GetElement().GetDof()) {
throw std::invalid_argument(
"Compactification coordinate DOF count does not match its "
"finite "
"element."
);
}
}
MappingStatus DomainMapperStateless::EvaluateCompactificationCoordinate(
const ElementCompactificationData &compactification,
mfem::ElementTransformation &transformation,
const mfem::IntegrationPoint &integration_point,
Workspace &workspace,
CompactificationPointData &point_data
) const {
const mfem::FiniteElement &element = compactification.GetElement();
const mfem::Vector &dofs = compactification.GetDofs();
const int dof_count = element.GetDof();
if (workspace.GetDimension() != m_options.dimension ||
transformation.GetSpaceDim() != m_options.dimension ||
element.GetDim() != m_options.dimension) {
return MappingStatus::invalid_dimension;
}
if (dofs.Size() != dof_count) {
return MappingStatus::invalid_dimension;
}
for (int i = 0; i < dofs.Size(); ++i) {
if (!std::isfinite(dofs(i)))
return MappingStatus::non_finite_input;
}
transformation.SetIntPoint(&integration_point);
workspace.m_compactification_shape.SetSize(dof_count);
workspace.m_compactification_dshape.SetSize(
dof_count, m_options.dimension
);
element.CalcShape(
integration_point, workspace.m_compactification_shape
);
element.CalcPhysDShape(
transformation, workspace.m_compactification_dshape
);
point_data.coordinate = dofs * workspace.m_compactification_shape;
point_data.coordinate_gradient.SetSize(m_options.dimension);
workspace.m_compactification_dshape.MultTranspose(
dofs, point_data.coordinate_gradient
);
if (!std::isfinite(point_data.coordinate)) {
return MappingStatus::non_finite_result;
}
for (int d = 0; d < point_data.coordinate_gradient.Size(); ++d) {
if (!std::isfinite(point_data.coordinate_gradient(d)))
return MappingStatus::non_finite_result;
}
return MappingStatus::valid;
}
void DomainMapperStateless::EvaluateField(
const ElementDisplacementData &field,
mfem::ElementTransformation &transformation,
const mfem::IntegrationPoint &integration_point,
Workspace &workspace,
mfem::Vector &value,
mfem::DenseMatrix &jacobian
) const {
transformation.SetIntPoint(&integration_point);
const mfem::FiniteElement &element = field.GetElement();
const mfem::DenseMatrix &dof_matrix = field.GetDofMatrix();
workspace.m_shape.SetSize(element.GetDof());
workspace.m_mesh_dshape.SetSize(element.GetDof(), m_options.dimension);
element.CalcShape(integration_point, workspace.m_shape);
element.CalcPhysDShape(transformation, workspace.m_mesh_dshape);
value.SetSize(m_options.dimension);
dof_matrix.MultTranspose(workspace.m_shape, value);
jacobian.SetSize(m_options.dimension, m_options.dimension);
mfem::MultAtB(dof_matrix, workspace.m_mesh_dshape, jacobian);
}
MappingStatus DomainMapperStateless::EvaluatePoint(
const ElementMappingData &element_data,
mfem::ElementTransformation &transformation,
const mfem::IntegrationPoint &integration_point,
Workspace &workspace,
MappingPointContext &context
) const {
ValidateElementData(element_data);
if (workspace.GetDimension() != m_options.dimension)
throw std::invalid_argument(
"The mapping workspace has the wrong dimension."
);
if (transformation.GetSpaceDim() != m_options.dimension)
throw std::invalid_argument(
"The element transformation has the wrong spatial dimension."
);
if (transformation.GetGeometryType() !=
element_data.displacement.GetElement().GetGeomType())
throw std::invalid_argument(
"The element transformation geometry does not match the "
"supplied "
"element data."
);
transformation.SetIntPoint(&integration_point);
context.reference_position.SetSize(m_options.dimension);
transformation.Transform(integration_point, context.reference_position);
EvaluateField(
element_data.displacement, transformation, integration_point,
workspace, workspace.m_field_value, workspace.m_field_jacobian
);
if (!vector_is_finite(context.reference_position) ||
!vector_is_finite(workspace.m_field_value) ||
!matrix_is_finite(workspace.m_field_jacobian)) {
return MappingStatus::non_finite_input;
}
context.displaced_position.SetSize(m_options.dimension);
context.displaced_position = context.reference_position;
context.displaced_position += workspace.m_field_value;
context.displacement_jacobian.SetSize(
m_options.dimension, m_options.dimension
);
context.displacement_jacobian = workspace.m_field_jacobian;
for (int i = 0; i < m_options.dimension; ++i)
context.displacement_jacobian(i, i) += 1.0;
context.compactified = IsCompactifiedElement(transformation);
if (context.compactified) {
const MappingStatus coordinate_status =
EvaluateCompactificationCoordinate(
element_data.compactification, transformation,
integration_point, workspace,
workspace.m_compactification_point
);
if (coordinate_status != MappingStatus::valid)
return coordinate_status;
const compactification::ExteriorMapInput exterior_input{
.reference_position = context.reference_position,
.displaced_position = context.displaced_position,
.displacement_jacobian = context.displacement_jacobian,
.compactification_coordinate =
workspace.m_compactification_point.coordinate,
.compactification_coordinate_gradient =
workspace.m_compactification_point.coordinate_gradient
};
const MappingStatus exterior_status = m_exterior_map->Evaluate(
exterior_input, workspace.m_exterior_result
);
if (exterior_status != MappingStatus::valid)
return exterior_status;
context.physical_position =
workspace.m_exterior_result.physical_position;
context.mapping_jacobian =
workspace.m_exterior_result.mapping_jacobian;
} else {
context.physical_position = context.displaced_position;
context.mapping_jacobian = context.displacement_jacobian;
}
if (!vector_is_finite(context.physical_position) ||
!matrix_is_finite(context.mapping_jacobian))
return MappingStatus::non_finite_result;
context.mapping_determinant = context.mapping_jacobian.Det();
if (!std::isfinite(context.mapping_determinant))
return MappingStatus::non_finite_result;
if (context.mapping_determinant <= 0.0)
return MappingStatus::non_positive_determinant;
context.inverse_mapping_jacobian.SetSize(
m_options.dimension, m_options.dimension
);
mfem::CalcInverse(
context.mapping_jacobian, context.inverse_mapping_jacobian
);
if (!matrix_is_finite(context.inverse_mapping_jacobian))
return MappingStatus::non_finite_result;
return MappingStatus::valid;
}
MappingStatus DomainMapperStateless::EvaluateVolume(
const ElementMappingData &element_data,
mfem::ElementTransformation &transformation,
const mfem::IntegrationPoint &integration_point,
Workspace &workspace,
VolumeMappingContext &context
) const {
const MappingStatus point_status = EvaluatePoint(
element_data, transformation, integration_point, workspace,
context.mapping
);
if (point_status != MappingStatus::valid)
return point_status;
transformation.SetIntPoint(&integration_point);
mfem::Mult(
context.mapping.mapping_jacobian, transformation.Jacobian(),
workspace.m_full_element_jacobian
);
context.quadrature.J_inv.SetSize(
m_options.dimension, m_options.dimension
);
mfem::CalcInverse(
workspace.m_full_element_jacobian, context.quadrature.J_inv
);
context.quadrature.detJ = context.mapping.mapping_determinant;
context.quadrature.weight = integration_point.weight *
transformation.Weight() *
context.mapping.mapping_determinant;
if (!matrix_is_finite(context.quadrature.J_inv) ||
!std::isfinite(context.quadrature.weight))
return MappingStatus::non_finite_result;
if (context.quadrature.weight <= 0.0)
return MappingStatus::non_positive_determinant;
return MappingStatus::valid;
}
mfem::ElementTransformation &
DomainMapperStateless::SelectFaceElementTransformation(
mfem::FaceElementTransformations &transformation,
const FaceElementSide side
) {
if (side == FaceElementSide::element_1) {
MFEM_VERIFY(
transformation.Elem1 != nullptr,
"The face does not have an element-1 transformation."
);
return *transformation.Elem1;
}
MFEM_VERIFY(
transformation.Elem2 != nullptr,
"The face does not have an element-2 transformation."
);
return *transformation.Elem2;
}
const mfem::IntegrationPoint &
DomainMapperStateless::SelectFaceElementIntegrationPoint(
mfem::FaceElementTransformations &transformation,
const FaceElementSide side
) {
mfem::ElementTransformation &element_transformation =
SelectFaceElementTransformation(transformation, side);
return element_transformation.GetIntPoint();
}
MappingStatus DomainMapperStateless::EvaluateFace(
const ElementMappingData &element_data,
mfem::FaceElementTransformations &transformation,
const FaceElementSide side,
const mfem::IntegrationPoint &integration_point,
Workspace &workspace,
FaceMappingContext &context
) const {
transformation.SetAllIntPoints(&integration_point);
mfem::ElementTransformation &element_transformation =
SelectFaceElementTransformation(transformation, side);
const mfem::IntegrationPoint &element_integration_point =
SelectFaceElementIntegrationPoint(transformation, side);
const MappingStatus point_status = EvaluatePoint(
element_data, element_transformation, element_integration_point,
workspace, context.mapping
);
if (point_status != MappingStatus::valid)
return point_status;
workspace.m_reference_normal.SetSize(m_options.dimension);
mfem::CalcOrtho(
transformation.Jacobian(), workspace.m_reference_normal
);
if (side == FaceElementSide::element_2)
workspace.m_reference_normal *= -1.0;
const double reference_normal_magnitude =
workspace.m_reference_normal.Norml2();
if (!std::isfinite(reference_normal_magnitude) ||
reference_normal_magnitude <= 0.0)
return MappingStatus::non_finite_result;
context.reference_normal.SetSize(m_options.dimension);
context.reference_normal = workspace.m_reference_normal;
context.reference_normal /= reference_normal_magnitude;
context.mapping.inverse_mapping_jacobian.MultTranspose(
workspace.m_reference_normal, workspace.m_mapped_normal
);
workspace.m_mapped_normal *= context.mapping.mapping_determinant;
const double mapped_normal_magnitude =
workspace.m_mapped_normal.Norml2();
if (!std::isfinite(mapped_normal_magnitude) ||
mapped_normal_magnitude <= 0.0)
return MappingStatus::non_finite_result;
context.quadrature.normal.SetSize(m_options.dimension);
context.quadrature.normal = workspace.m_mapped_normal;
context.quadrature.normal /= mapped_normal_magnitude;
context.reference_surface_weight =
integration_point.weight * reference_normal_magnitude;
context.physical_surface_weight =
integration_point.weight * mapped_normal_magnitude;
context.quadrature.ds = context.reference_surface_weight;
context.quadrature.v_dot_n_scale =
mapped_normal_magnitude / reference_normal_magnitude;
if (!vector_is_finite(context.quadrature.normal) ||
!std::isfinite(context.reference_surface_weight) ||
!std::isfinite(context.physical_surface_weight) ||
!std::isfinite(context.quadrature.v_dot_n_scale)) {
return MappingStatus::non_finite_result;
}
return MappingStatus::valid;
}
MappingStatus DomainMapperStateless::EvaluatePointVariation(
const ElementMappingData &element_data,
const ElementDisplacementData &direction,
mfem::ElementTransformation &transformation,
const mfem::IntegrationPoint &integration_point,
const MappingPointContext &base_context,
Workspace &workspace,
MappingPointVariation &variation
) const {
ValidateElementData(element_data);
const ElementMappingData direction_data{
.displacement = direction,
.compactification = element_data.compactification
};
ValidateElementData(direction_data);
if (element_data.displacement.GetDofCount() != direction.GetDofCount())
throw std::invalid_argument(
"The displacement and direction elements have different "
"degree-of-freedom counts."
);
if (workspace.GetDimension() != m_options.dimension)
throw std::invalid_argument(
"The mapping workspace has the wrong dimension."
);
if (base_context.compactified != IsCompactifiedElement(transformation))
throw std::invalid_argument(
"The base mapping context does not match the current element "
"domain."
);
EvaluateField(
direction, transformation, integration_point, workspace,
workspace.m_field_value, workspace.m_field_jacobian
);
if (!vector_is_finite(workspace.m_field_value) ||
!matrix_is_finite(workspace.m_field_jacobian))
return MappingStatus::non_finite_input;
variation.displacement_variation = workspace.m_field_value;
variation.displacement_jacobian_variation = workspace.m_field_jacobian;
if (base_context.compactified) {
const MappingStatus coordinate_status =
EvaluateCompactificationCoordinate(
element_data.compactification, transformation,
integration_point, workspace,
workspace.m_compactification_point
);
if (coordinate_status != MappingStatus::valid)
return coordinate_status;
const compactification::ExteriorMapInput exterior_input{
.reference_position = base_context.reference_position,
.displaced_position = base_context.displaced_position,
.displacement_jacobian = base_context.displacement_jacobian,
.compactification_coordinate =
workspace.m_compactification_point.coordinate,
.compactification_coordinate_gradient =
workspace.m_compactification_point.coordinate_gradient
};
workspace.m_exterior_result.physical_position =
base_context.physical_position;
workspace.m_exterior_result.mapping_jacobian =
base_context.mapping_jacobian;
const compactification::ExteriorMapDirection exterior_direction{
.displaced_position_variation =
variation.displacement_variation,
.displacement_jacobian_variation =
variation.displacement_jacobian_variation
};
// ReSharper disable once CppTooWideScopeInitStatement
const MappingStatus exterior_status =
m_exterior_map->EvaluateVariation(
exterior_input, workspace.m_exterior_result,
exterior_direction, workspace.m_exterior_variation
);
if (exterior_status != MappingStatus::valid) {
return exterior_status;
}
variation.physical_position_variation =
workspace.m_exterior_variation.physical_position_variation;
variation.mapping_jacobian_variation =
workspace.m_exterior_variation.mapping_jacobian_variation;
} else {
variation.physical_position_variation =
variation.displacement_variation;
variation.mapping_jacobian_variation =
variation.displacement_jacobian_variation;
}
mfem::Mult(
base_context.inverse_mapping_jacobian,
variation.mapping_jacobian_variation, workspace.m_matrix_temp_1
);
double trace = 0.0;
for (int i = 0; i < m_options.dimension; ++i)
trace += workspace.m_matrix_temp_1(i, i);
variation.mapping_determinant_variation =
base_context.mapping_determinant * trace;
variation.inverse_mapping_jacobian_variation.SetSize(
m_options.dimension, m_options.dimension
);
mfem::Mult(
workspace.m_matrix_temp_1, base_context.inverse_mapping_jacobian,
variation.inverse_mapping_jacobian_variation
);
variation.inverse_mapping_jacobian_variation *= -1.0;
if (!vector_is_finite(variation.physical_position_variation) ||
!matrix_is_finite(variation.mapping_jacobian_variation) ||
!matrix_is_finite(variation.inverse_mapping_jacobian_variation) ||
!std::isfinite(variation.mapping_determinant_variation)) {
return MappingStatus::non_finite_result;
}
return MappingStatus::valid;
}
MappingStatus DomainMapperStateless::EvaluateVolumeVariation(
const ElementMappingData &element_data,
const ElementDisplacementData &direction,
mfem::ElementTransformation &transformation,
const mfem::IntegrationPoint &integration_point,
const VolumeMappingContext &base_context,
Workspace &workspace,
VolumeMappingVariation &variation
) const {
const MappingStatus point_status = EvaluatePointVariation(
element_data, direction, transformation, integration_point,
base_context.mapping, workspace, variation.mapping
);
if (point_status != MappingStatus::valid)
return point_status;
transformation.SetIntPoint(&integration_point);
mfem::Mult(
variation.mapping.mapping_jacobian_variation,
transformation.Jacobian(), workspace.m_full_element_jacobian
);
mfem::Mult(
base_context.quadrature.J_inv, workspace.m_full_element_jacobian,
workspace.m_matrix_temp_1
);
variation.inverse_element_jacobian_variation.SetSize(
m_options.dimension, m_options.dimension
);
mfem::Mult(
workspace.m_matrix_temp_1, base_context.quadrature.J_inv,
variation.inverse_element_jacobian_variation
);
variation.inverse_element_jacobian_variation *= -1.0;
variation.weight_variation =
integration_point.weight * transformation.Weight() *
variation.mapping.mapping_determinant_variation;
if (!matrix_is_finite(variation.inverse_element_jacobian_variation) ||
!std::isfinite(variation.weight_variation))
return MappingStatus::non_finite_result;
return MappingStatus::valid;
}
MappingStatus DomainMapperStateless::EvaluateFaceVariation(
const ElementMappingData &element_data,
const ElementDisplacementData &direction,
mfem::FaceElementTransformations &transformation,
const FaceElementSide side,
const mfem::IntegrationPoint &integration_point,
const FaceMappingContext &base_context,
Workspace &workspace,
FaceMappingVariation &variation
) const {
transformation.SetAllIntPoints(&integration_point);
mfem::ElementTransformation &element_transformation =
SelectFaceElementTransformation(transformation, side);
const mfem::IntegrationPoint &element_integration_point =
SelectFaceElementIntegrationPoint(transformation, side);
const MappingStatus point_status = EvaluatePointVariation(
element_data, direction, element_transformation,
element_integration_point, base_context.mapping, workspace,
variation.mapping
);
if (point_status != MappingStatus::valid)
return point_status;
workspace.m_reference_normal.SetSize(m_options.dimension);
mfem::CalcOrtho(
transformation.Jacobian(), workspace.m_reference_normal
);
if (side == FaceElementSide::element_2)
workspace.m_reference_normal *= -1.0;
const double reference_normal_magnitude =
workspace.m_reference_normal.Norml2();
if (!std::isfinite(reference_normal_magnitude) ||
reference_normal_magnitude <= 0.0)
return MappingStatus::non_finite_result;
base_context.mapping.inverse_mapping_jacobian.MultTranspose(
workspace.m_reference_normal, workspace.m_vector_temp
);
workspace.m_mapped_normal = workspace.m_vector_temp;
workspace.m_mapped_normal *= base_context.mapping.mapping_determinant;
variation.physical_normal_variation.SetSize(m_options.dimension);
variation.mapping.inverse_mapping_jacobian_variation.MultTranspose(
workspace.m_reference_normal, variation.physical_normal_variation
);
variation.physical_normal_variation *=
base_context.mapping.mapping_determinant;
variation.physical_normal_variation.Add(
variation.mapping.mapping_determinant_variation,
workspace.m_vector_temp
);
const double mapped_normal_magnitude =
workspace.m_mapped_normal.Norml2();
if (!std::isfinite(mapped_normal_magnitude) ||
mapped_normal_magnitude <= 0.0)
return MappingStatus::non_finite_result;
const double mapped_normal_magnitude_variation =
base_context.quadrature.normal *
variation.physical_normal_variation;
variation.physical_normal_variation.Add(
-mapped_normal_magnitude_variation, base_context.quadrature.normal
);
variation.physical_normal_variation /= mapped_normal_magnitude;
variation.physical_surface_weight_variation =
integration_point.weight * mapped_normal_magnitude_variation;
variation.normal_flux_scale_variation =
mapped_normal_magnitude_variation / reference_normal_magnitude;
if (!vector_is_finite(variation.physical_normal_variation) ||
!std::isfinite(variation.physical_surface_weight_variation) ||
!std::isfinite(variation.normal_flux_scale_variation)) {
return MappingStatus::non_finite_result;
}
return MappingStatus::valid;
}
} // namespace mean_field::mapping

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module;
#include <mfem.hpp>
module mean_field;
import :mapping.types;
namespace mean_field::mapping {
void MapHDivFluxToPhysical(
const MappingPointContext &context,
const mfem::Vector &reference_flux,
mfem::Vector &physical_flux
) {
MFEM_VERIFY(
reference_flux.Size() == context.mapping_jacobian.Width(),
"The reference H(div) flux has the wrong dimension."
);
physical_flux.SetSize(reference_flux.Size());
context.mapping_jacobian.Mult(reference_flux, physical_flux);
physical_flux /= context.mapping_determinant;
}
void MapPhysicalFluxToHDivReference(
const MappingPointContext &context,
const mfem::Vector &physical_flux,
mfem::Vector &reference_flux
) {
MFEM_VERIFY(
physical_flux.Size() == context.inverse_mapping_jacobian.Width(),
"The physical H(div) flux has the wrong dimension."
);
reference_flux.SetSize(physical_flux.Size());
context.inverse_mapping_jacobian.Mult(physical_flux, reference_flux);
reference_flux *= context.mapping_determinant;
}
void MapReferenceGradientToPhysical(
const MappingPointContext &context,
const mfem::Vector &reference_gradient,
mfem::Vector &physical_gradient
) {
MFEM_VERIFY(
reference_gradient.Size() ==
context.inverse_mapping_jacobian.Height(),
"The reference scalar gradient has the wrong dimension."
);
physical_gradient.SetSize(reference_gradient.Size());
context.inverse_mapping_jacobian.MultTranspose(
reference_gradient, physical_gradient
);
}
void MapPhysicalGradientToReference(
const MappingPointContext &context,
const mfem::Vector &physical_gradient,
mfem::Vector &reference_gradient
) {
MFEM_VERIFY(
physical_gradient.Size() == context.mapping_jacobian.Height(),
"The physical scalar gradient has the wrong dimension."
);
reference_gradient.SetSize(physical_gradient.Size());
context.mapping_jacobian.MultTranspose(
physical_gradient, reference_gradient
);
}
void MapReferenceVectorGradientToPhysical(
const MappingPointContext &context,
const mfem::DenseMatrix &reference_gradient,
mfem::DenseMatrix &physical_gradient
) {
MFEM_VERIFY(
reference_gradient.Width() ==
context.inverse_mapping_jacobian.Height(),
"The reference vector gradient has the wrong dimension."
);
physical_gradient.SetSize(
reference_gradient.Height(),
context.inverse_mapping_jacobian.Width()
);
mfem::Mult(
reference_gradient, context.inverse_mapping_jacobian,
physical_gradient
);
}
void MapPhysicalVectorGradientToReference(
const MappingPointContext &context,
const mfem::DenseMatrix &physical_gradient,
mfem::DenseMatrix &reference_gradient
) {
MFEM_VERIFY(
physical_gradient.Width() == context.mapping_jacobian.Height(),
"The physical vector gradient has the wrong dimension."
);
reference_gradient.SetSize(
physical_gradient.Height(), context.mapping_jacobian.Width()
);
mfem::Mult(
physical_gradient, context.mapping_jacobian, reference_gradient
);
}
double MapHDivDivergenceToPhysical(
const MappingPointContext &context,
const double reference_divergence
) {
return reference_divergence / context.mapping_determinant;
}
void ComputeHDivMassTensor(
const MappingPointContext &context,
mfem::DenseMatrix &mass_tensor
) {
const int dimension = context.mapping_jacobian.Height();
MFEM_VERIFY(
context.mapping_jacobian.Width() == dimension,
"The mapping Jacobian must be square."
);
MFEM_VERIFY(
context.mapping_determinant > 0.0,
"The mapping determinant must be positive."
);
mass_tensor.SetSize(dimension, dimension);
mfem::MultAtB(
context.mapping_jacobian, context.mapping_jacobian, mass_tensor
);
mass_tensor *= 1 / context.mapping_determinant;
}
void ComputeScalarDiffusionTensor(
const MappingPointContext &context,
mfem::DenseMatrix &diffusion_tensor
) {
const int dimension = context.inverse_mapping_jacobian.Height();
MFEM_VERIFY(
context.inverse_mapping_jacobian.Width() == dimension,
"The inverse mapping Jacobian must be square."
);
MFEM_VERIFY(
context.mapping_determinant > 0.0,
"The mapping determinant must be positive."
);
diffusion_tensor.SetSize(dimension, dimension);
mfem::MultABt(
context.inverse_mapping_jacobian, context.inverse_mapping_jacobian,
diffusion_tensor
);
diffusion_tensor *= context.mapping_determinant;
}
void MapHCurlFieldToPhysical(
const MappingPointContext &context,
const mfem::Vector &reference_field,
mfem::Vector &physical_field
) {
MFEM_VERIFY(
reference_field.Size() == context.inverse_mapping_jacobian.Height(),
"The reference H(curl) field has the wrong dimension."
);
physical_field.SetSize(reference_field.Size());
context.inverse_mapping_jacobian.MultTranspose(
reference_field, physical_field
);
}
void MapPhysicalFieldToHCurlReference(
const MappingPointContext &context,
const mfem::Vector &physical_field,
mfem::Vector &reference_field
) {
MFEM_VERIFY(
physical_field.Size() == context.mapping_jacobian.Height(),
"The physical H(curl) field has the wrong dimension."
);
reference_field.SetSize(physical_field.Size());
context.mapping_jacobian.MultTranspose(physical_field, reference_field);
}
void MapHCurlCurlToPhysical(
const MappingPointContext &context,
const mfem::Vector &reference_curl,
mfem::Vector &physical_curl
) {
MFEM_VERIFY(
reference_curl.Size() == context.mapping_jacobian.Width(),
"The reference H(curl) curl has the wrong dimension."
);
physical_curl.SetSize(reference_curl.Size());
context.mapping_jacobian.Mult(reference_curl, physical_curl);
physical_curl /= context.mapping_determinant;
}
void MapPhysicalCurlToHCurlReference(
const MappingPointContext &context,
const mfem::Vector &physical_curl,
mfem::Vector &reference_curl
) {
MFEM_VERIFY(
physical_curl.Size() == context.inverse_mapping_jacobian.Width(),
"The physical H(curl) curl has the wrong dimension."
);
reference_curl.SetSize(physical_curl.Size());
context.inverse_mapping_jacobian.Mult(physical_curl, reference_curl);
reference_curl *= context.mapping_determinant;
}
// TODO: Investigate these
void ComputeHCurlMassTensor(
const MappingPointContext &context,
mfem::DenseMatrix &mass_tensor
) {
ComputeScalarDiffusionTensor(context, mass_tensor);
}
void ComputeHCurlCurlTensor(
const MappingPointContext &context,
mfem::DenseMatrix &curl_tensor
) {
ComputeHDivMassTensor(context, curl_tensor);
}
void ComputeHDivMassTensorVariation(
const MappingPointContext &context,
const MappingPointVariation &variation,
mfem::DenseMatrix &mass_tensor_variation
) {
const double determinant = context.mapping_determinant;
const double determinant_variation =
variation.mapping_determinant_variation;
const int dimension = context.inverse_mapping_jacobian.Width();
mass_tensor_variation.SetSize(dimension, dimension);
MFEM_VERIFY(
std::isfinite(determinant) && determinant > 0.0,
"The mapping determinant must be positive and finite."
);
MFEM_VERIFY(
std::isfinite(determinant_variation),
"The mapping determinant variation must be finite."
);
mfem::DenseMatrix determinant_correction(dimension, dimension);
ComputeHDivMassTensor(context, determinant_correction);
determinant_correction *= determinant_variation / determinant;
mfem::DenseMatrix right_jacobian_variation(dimension, dimension);
mfem::MultAtB(
context.mapping_jacobian, variation.mapping_jacobian_variation,
right_jacobian_variation
);
mfem::MultAtB(
variation.mapping_jacobian_variation, context.mapping_jacobian,
mass_tensor_variation
);
mass_tensor_variation += right_jacobian_variation;
mass_tensor_variation *= 1 / determinant;
mass_tensor_variation -= determinant_correction;
}
} // namespace mean_field::mapping

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module;
#include <cstdint>
#include <mfem.hpp>
module mean_field;
import :operators.context.barotropic_closure_linearization;
namespace mean_field::operators::context::barotropic {
BarotropicClosureLinearizationContext::
BarotropicClosureLinearizationContext(
const fem::FEM &f,
const mapping::DomainMapperStateless &domainMapper,
const physics::PolytropicBarotrope &barotrope
)
: m_f(f),
m_operator(
f,
domainMapper,
barotrope
) {
MFEM_VERIFY(
m_f.densityFes != nullptr,
"The closure linearization context requires the "
"density finite-element space."
);
MFEM_VERIFY(
m_f.enthalpyFes != nullptr,
"The closure linearization context requires the "
"enthalpy finite-element space."
);
MFEM_VERIFY(
m_f.displacementFes != nullptr,
"The closure linearization context requires the "
"displacement finite-element space."
);
}
void BarotropicClosureLinearizationContext::Prepare(
const mfem::Vector &baseDensityTrue,
const mfem::Vector &baseEnthalpyTrue,
const mfem::Vector &displacementTrue,
const BarotropicClosureRevisions &revisions
) {
MFEM_VERIFY(
baseDensityTrue.Size() == m_f.densityFes->GetTrueVSize(),
"The closure base-density vector has the wrong size."
);
MFEM_VERIFY(
baseEnthalpyTrue.Size() == m_f.enthalpyFes->GetTrueVSize(),
"The closure base-enthalpy vector has the wrong size."
);
MFEM_VERIFY(
displacementTrue.Size() == m_f.displacementFes->GetTrueVSize(),
"The closure displacement vector has the wrong size."
);
if (m_isPrepared && revisions == m_revisions) {
return;
}
m_operator.Prepare(baseDensityTrue, baseEnthalpyTrue, displacementTrue);
m_baseDensityTrue = baseDensityTrue;
m_baseEnthalpyTrue = baseEnthalpyTrue;
m_displacementTrue = displacementTrue;
m_revisions = revisions;
m_isPrepared = true;
++m_preparationCount;
}
bool BarotropicClosureLinearizationContext::IsPrepared() const noexcept {
return m_isPrepared;
}
bool BarotropicClosureLinearizationContext::MatchesRevisions(
const BarotropicClosureRevisions &revisions
) const noexcept {
return m_isPrepared && revisions == m_revisions;
}
std::uint64_t BarotropicClosureLinearizationContext::
GetPreparationCount() const noexcept {
return m_preparationCount;
}
const BarotropicClosureRevisions &
BarotropicClosureLinearizationContext::GetRevisions() const {
VerifyPrepared();
return m_revisions;
}
const mfem::Vector &
BarotropicClosureLinearizationContext::GetBaseDensityTrue() const {
VerifyPrepared();
return m_baseDensityTrue;
}
const mfem::Vector &
BarotropicClosureLinearizationContext::GetBaseEnthalpyTrue() const {
VerifyPrepared();
return m_baseEnthalpyTrue;
}
const mfem::Vector &
BarotropicClosureLinearizationContext::GetDisplacementTrue() const {
VerifyPrepared();
return m_displacementTrue;
}
const PreparedBarotropicClosureOperator &
BarotropicClosureLinearizationContext::GetOperator() const noexcept {
return m_operator;
}
void BarotropicClosureLinearizationContext::BuildResidual(
mfem::Vector &residual
) const {
VerifyPrepared();
m_operator.BuildResidual(residual);
}
void BarotropicClosureLinearizationContext::VerifyPrepared() const {
MFEM_VERIFY(
m_isPrepared, "The barotropic-closure linearization context "
"has not been prepared."
);
}
} // namespace mean_field::operators::context::barotropic

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module;
#include <cmath>
#include <memory>
#include <mfem.hpp>
module mean_field;
import :operators.context.gravity_field;
namespace {
void validate_displacement(
const mean_field::fem::FEM &f,
const mfem::Vector &displacement_true
) {
MFEM_VERIFY(
f.displacementFes != nullptr,
"GravityFieldGeometryContext requires the "
"displacement finite-element space."
);
MFEM_VERIFY(
displacement_true.Size() == f.displacementFes->GetTrueVSize(),
"GravityFieldGeometryContext received a displacement vector with "
"the "
"wrong size."
);
for (int i = 0; i < displacement_true.Size(); ++i) {
MFEM_VERIFY(
std::isfinite(displacement_true(i)),
"GravityFieldGeometryContext received a non-finite "
"displacement "
"value."
);
}
}
void validate_linearization_state(
const mean_field::fem::FEM &f,
const mean_field::operators::context::gravity_field::
GravityFieldStateView &state
) {
MFEM_VERIFY(
f.densityFes != nullptr, "GravityFieldLinearizationContext "
"requires the density finite-element "
"space."
);
MFEM_VERIFY(
f.gravityPotentialFes != nullptr,
"GravityFieldLinearizationContext requires the gravity-potential "
"finite-element space."
);
MFEM_VERIFY(
f.gravityFluxFes != nullptr,
"GravityFieldLinearizationContext requires the "
"gravity-gradient finite-element space."
);
MFEM_VERIFY(
f.displacementFes != nullptr,
"GravityFieldLinearizationContext requires "
"the displacement finite-element space."
);
MFEM_VERIFY(
state.density.Size() == f.densityFes->GetTrueVSize(),
"GravityFieldLinearizationContext received a density vector with "
"the "
"wrong size."
);
MFEM_VERIFY(
state.displacement.Size() == f.displacementFes->GetTrueVSize(),
"GravityFieldLinearizationContext received a displacement vector "
"with "
"the wrong size."
);
MFEM_VERIFY(
state.gravity_gradient.Size() == f.gravityFluxFes->GetTrueVSize(),
"GravityFieldLinearizationContext received a gravity-gradient "
"vector "
"with the wrong size."
);
MFEM_VERIFY(
state.gravity_potential.Size() ==
f.gravityPotentialFes->GetTrueVSize(),
"GravityFieldLinearizationContext received a gravity-potential "
"vector "
"with the wrong size."
);
for (int i = 0; i < state.density.Size(); ++i) {
MFEM_VERIFY(
std::isfinite(state.density(i)),
"GravityFieldLinearizationContext received a non-finite "
"density "
"value."
);
}
for (int i = 0; i < state.displacement.Size(); ++i) {
MFEM_VERIFY(
std::isfinite(state.displacement(i)),
"GravityFieldLinearizationContext received a non-finite "
"displacement "
"value."
);
}
for (int i = 0; i < state.gravity_gradient.Size(); ++i) {
MFEM_VERIFY(
std::isfinite(state.gravity_gradient(i)),
"GravityFieldLinearizationContext received a non-finite "
"gravity-gradient value."
);
}
for (int i = 0; i < state.gravity_potential.Size(); ++i) {
MFEM_VERIFY(
std::isfinite(state.gravity_potential(i)),
"GravityFieldLinearizationContext received a non-finite "
"gravity-potential value."
);
}
}
} // namespace
namespace mean_field::operators::context::gravity_field {
GravityFieldGeometryContext::GravityFieldGeometryContext(
const fem::FEM &f,
const mapping::DomainMapperStateless &domain_mapper
)
: m_fem(f),
m_domain_mapper(domain_mapper) {
MFEM_VERIFY(
f.mesh != nullptr, "GravityFieldGeometryContext requires a mesh."
);
MFEM_VERIFY(
f.gravityFluxFes != nullptr,
"GravityFieldGeometryContext requires the "
"gravity-gradient finite-element space."
);
MFEM_VERIFY(
f.densityFes != nullptr,
"GravityFieldGeometryContext requires the density finite-element "
"space."
);
MFEM_VERIFY(
f.gravityPotentialFes != nullptr,
"GravityFieldGeometryContext requires the gravity-potential "
"finite-element space."
);
MFEM_VERIFY(
f.displacementFes != nullptr,
"GravityFieldGeometryContext requires the "
"displacement finite-element space."
);
MFEM_VERIFY(
f.compactificationFes != nullptr,
"GravityFieldGeometryContext requires the compactification "
"finite-element space."
);
MFEM_VERIFY(
f.compactificationCoordinate != nullptr,
"GravityFieldGeometryContext requires the compactification "
"coordinate."
);
MFEM_VERIFY(
f.quadratureFactory != nullptr,
"GravityFieldGeometryContext requires the quadrature-rule factory."
);
MFEM_VERIFY(
domain_mapper.GetDimension() == f.mesh->Dimension(),
"The stateless domain-mapper dimension does not match the mesh "
"dimension."
);
}
GravityFieldGeometryPreparation GravityFieldGeometryContext::Prepare(
const mfem::Vector &displacement_true,
const DiscretizationRevision discretization_revision,
const DisplacementRevision displacement_revision
) {
validate_displacement(m_fem, displacement_true);
if (m_is_prepared) {
MFEM_VERIFY(
discretization_revision >= m_discretization_revision,
"GravityFieldGeometryContext received an older discretization "
"revision."
);
MFEM_VERIFY(
displacement_revision >= m_displacement_revision,
"GravityFieldGeometryContext received an older displacement "
"revision."
);
}
const bool discretization_changed =
!m_is_prepared ||
discretization_revision != m_discretization_revision;
const bool displacement_changed =
!m_is_prepared || displacement_revision != m_displacement_revision;
GravityFieldGeometryPreparation preparation;
if (!discretization_changed && !displacement_changed) {
return preparation;
}
if (discretization_changed) {
auto mass_operator =
std::make_unique<PreparedMappedHDivMassOperator>(
m_fem, m_domain_mapper
);
auto source_operator =
std::make_unique<PreparedMappedGravitySourceOperator>(
m_fem, m_domain_mapper
);
mass_operator->Prepare(displacement_true);
source_operator->Prepare(displacement_true);
m_mass_operator = std::move(mass_operator);
m_source_operator = std::move(source_operator);
preparation.reconstructed_operators = true;
preparation.rebuilt_mass_operator = true;
preparation.rebuilt_source_operator = true;
} else {
MFEM_VERIFY(
m_mass_operator != nullptr, "GravityFieldGeometryContext has "
"no prepared H(div) mass operator."
);
MFEM_VERIFY(
m_source_operator != nullptr,
"GravityFieldGeometryContext has no prepared gravity source "
"operator."
);
m_mass_operator->Prepare(displacement_true);
m_source_operator->Prepare(displacement_true);
preparation.rebuilt_mass_operator = true;
preparation.rebuilt_source_operator = true;
}
m_displacement_true = displacement_true;
m_discretization_revision = discretization_revision;
m_displacement_revision = displacement_revision;
m_is_prepared = true;
preparation.refreshed_variation_state = true;
return preparation;
}
const PreparedMappedHDivMassOperator &
GravityFieldGeometryContext::GetMassOperator() const {
MFEM_VERIFY(
m_is_prepared,
"GravityFieldGeometryContext must be prepared before "
"accessing its mass operator."
);
MFEM_VERIFY(
m_mass_operator != nullptr,
"GravityFieldGeometryContext has no prepared H(div) mass operator."
);
return *m_mass_operator;
}
const PreparedMappedGravitySourceOperator &
GravityFieldGeometryContext::GetSourceOperator() const {
MFEM_VERIFY(
m_is_prepared,
"GravityFieldGeometryContext must be prepared before "
"accessing its source operator."
);
MFEM_VERIFY(
m_source_operator != nullptr, "GravityFieldGeometryContext has no "
"prepared gravity source operator."
);
return *m_source_operator;
}
const mfem::Vector &GravityFieldGeometryContext::GetDisplacement() const {
MFEM_VERIFY(
m_is_prepared,
"GravityFieldGeometryContext must be prepared before "
"accessing its displacement."
);
return m_displacement_true;
}
DiscretizationRevision
GravityFieldGeometryContext::GetDiscretizationRevision() const noexcept {
return m_discretization_revision;
}
DisplacementRevision
GravityFieldGeometryContext::GetDisplacementRevision() const noexcept {
return m_displacement_revision;
}
bool GravityFieldGeometryContext::IsPrepared() const noexcept {
return m_is_prepared;
}
GravityFieldLinearizationContext::GravityFieldLinearizationContext(
const fem::FEM &f,
const mapping::DomainMapperStateless &domain_mapper
)
: m_fem(f),
m_geometry_context(
f,
domain_mapper
) {
MFEM_VERIFY(
f.densityFes != nullptr, "GravityFieldLinearizationContext "
"requires the density finite-element "
"space."
);
MFEM_VERIFY(
f.gravityPotentialFes != nullptr,
"GravityFieldLinearizationContext requires the gravity-potential "
"finite-element space."
);
MFEM_VERIFY(
f.gravityFluxFes != nullptr,
"GravityFieldLinearizationContext requires the "
"gravity-gradient finite-element space."
);
MFEM_VERIFY(
f.displacementFes != nullptr,
"GravityFieldLinearizationContext requires "
"the displacement finite-element space."
);
}
GravityFieldPreparationReport GravityFieldLinearizationContext::Prepare(
const GravityFieldStateView &state,
const GravityFieldRevisions &revisions
) {
validate_linearization_state(m_fem, state);
if (m_is_prepared) {
MFEM_VERIFY(
revisions.discretization >= m_revisions.discretization,
"GravityFieldLinearizationContext received an older "
"discretization "
"revision."
);
MFEM_VERIFY(
revisions.displacement >= m_revisions.displacement,
"GravityFieldLinearizationContext received an older "
"displacement "
"revision."
);
MFEM_VERIFY(
revisions.density >= m_revisions.density,
"GravityFieldLinearizationContext received an older density "
"revision."
);
MFEM_VERIFY(
revisions.gravity_gradient >= m_revisions.gravity_gradient,
"GravityFieldLinearizationContext received an older "
"gravity-gradient "
"revision."
);
MFEM_VERIFY(
revisions.gravity_potential >= m_revisions.gravity_potential,
"GravityFieldLinearizationContext received an older "
"gravity-potential revision."
);
}
const bool discretization_changed =
!m_is_prepared ||
revisions.discretization != m_revisions.discretization;
const bool density_changed = !m_is_prepared || discretization_changed ||
revisions.density != m_revisions.density;
const bool gravity_gradient_changed =
!m_is_prepared || discretization_changed ||
revisions.gravity_gradient != m_revisions.gravity_gradient;
GravityFieldPreparationReport report;
report.geometry = m_geometry_context.Prepare(
state.displacement, revisions.discretization, revisions.displacement
);
if (density_changed) {
m_density_true = state.density;
report.updated_density = true;
}
if (gravity_gradient_changed) {
m_gravity_gradient_true = state.gravity_gradient;
report.updated_gravity_gradient = true;
}
m_revisions = revisions;
m_is_prepared = true;
return report;
}
const GravityFieldGeometryContext &
GravityFieldLinearizationContext::GetGeometryContext() const {
MFEM_VERIFY(
m_is_prepared, "GravityFieldLinearizationContext must be prepared "
"before accessing its geometry context."
);
return m_geometry_context;
}
const mfem::Vector &GravityFieldLinearizationContext::GetDensity() const {
MFEM_VERIFY(
m_is_prepared, "GravityFieldLinearizationContext must be prepared "
"before accessing its density."
);
return m_density_true;
}
const mfem::Vector &
GravityFieldLinearizationContext::GetGravityGradient() const {
MFEM_VERIFY(
m_is_prepared, "GravityFieldLinearizationContext must be prepared "
"before accessing its gravity gradient."
);
return m_gravity_gradient_true;
}
const GravityFieldRevisions &
GravityFieldLinearizationContext::GetRevisions() const {
MFEM_VERIFY(
m_is_prepared, "GravityFieldLinearizationContext must be prepared "
"before accessing its revisions."
);
return m_revisions;
}
bool GravityFieldLinearizationContext::IsPrepared() const noexcept {
return m_is_prepared;
}
} // namespace mean_field::operators::context::gravity_field

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module;
#include <cmath>
#include <mfem.hpp>
module mean_field;
import :operators.context.hydrostatic_equilibrium;
namespace {
void validate_finite_vector(
const mfem::Vector &vector,
const char *message
) {
for (int i = 0; i < vector.Size(); ++i) {
MFEM_VERIFY(std::isfinite(vector(i)), message);
}
}
void validate_state(
const mean_field::fem::FEM &f,
const mean_field::operators::context::hydrostatic::
HydrostaticEquilibriumStateView &state
) {
MFEM_VERIFY(
f.enthalpyFes != nullptr,
"HydrostaticEquilibriumContext requires the "
"enthalpy finite-element space."
);
MFEM_VERIFY(
f.gravityPotentialFes != nullptr,
"HydrostaticEquilibriumContext requires the "
"gravity-potential finite-element space."
);
MFEM_VERIFY(
f.displacementFes != nullptr,
"HydrostaticEquilibriumContext requires the "
"displacement finite-element space."
);
MFEM_VERIFY(
state.enthalpy.Size() == f.enthalpyFes->GetTrueVSize(),
"HydrostaticEquilibriumContext received an "
"enthalpy vector with the wrong size."
);
MFEM_VERIFY(
state.gravityPotential.Size() ==
f.gravityPotentialFes->GetTrueVSize(),
"HydrostaticEquilibriumContext received a "
"gravity-potential vector with the wrong size."
);
MFEM_VERIFY(
state.displacement.Size() == f.displacementFes->GetTrueVSize(),
"HydrostaticEquilibriumContext received a "
"displacement vector with the wrong size."
);
validate_finite_vector(
state.enthalpy, "HydrostaticEquilibriumContext received a "
"non-finite enthalpy value."
);
validate_finite_vector(
state.gravityPotential, "HydrostaticEquilibriumContext received a "
"non-finite gravity-potential value."
);
validate_finite_vector(
state.displacement, "HydrostaticEquilibriumContext received a "
"non-finite displacement value."
);
MFEM_VERIFY(
std::isfinite(state.bernoulliConstant),
"HydrostaticEquilibriumContext received a "
"non-finite Bernoulli constant."
);
}
template <typename Stamp>
void validate_dependency_transition(
const Stamp &prepared,
const Stamp &requested,
const char *message
) {
MFEM_VERIFY(requested.CanFollow(prepared), message);
}
} // namespace
namespace mean_field::operators::context::hydrostatic {
HydrostaticEquilibriumContext::HydrostaticEquilibriumContext(
const fem::FEM &f,
const mapping::DomainMapperStateless &domainMapper
)
: m_f(f),
m_domainMapper(domainMapper) {
MFEM_VERIFY(
m_f.mesh != nullptr,
"HydrostaticEquilibriumContext requires a mesh."
);
MFEM_VERIFY(
m_f.enthalpyFes != nullptr,
"HydrostaticEquilibriumContext requires the "
"enthalpy finite-element space."
);
MFEM_VERIFY(
m_f.gravityPotentialFes != nullptr,
"HydrostaticEquilibriumContext requires the "
"gravity-potential finite-element space."
);
MFEM_VERIFY(
m_f.displacementFes != nullptr,
"HydrostaticEquilibriumContext requires the "
"displacement finite-element space."
);
MFEM_VERIFY(
m_domainMapper.GetDimension() == m_f.mesh->Dimension(),
"The hydrostatic context's stateless "
"domain-mapper dimension does not match the mesh "
"dimension."
);
}
HydrostaticPreparationReport HydrostaticEquilibriumContext::Prepare(
const HydrostaticEquilibriumStateView &state,
const HydrostaticEquilibriumDependencies &dependencies
) {
validate_state(m_f, state);
if (m_isPrepared) {
validate_dependency_transition(
m_dependencies.discretization, dependencies.discretization,
"HydrostaticEquilibriumContext received an older "
"discretization revision for the same identity."
);
validate_dependency_transition(
m_dependencies.enthalpy, dependencies.enthalpy,
"HydrostaticEquilibriumContext received an older "
"enthalpy revision for the same identity."
);
validate_dependency_transition(
m_dependencies.gravityPotential, dependencies.gravityPotential,
"HydrostaticEquilibriumContext received an older "
"gravity-potential revision for the same identity."
);
validate_dependency_transition(
m_dependencies.displacement, dependencies.displacement,
"HydrostaticEquilibriumContext received an older "
"displacement revision for the same identity."
);
validate_dependency_transition(
m_dependencies.rotation, dependencies.rotation,
"HydrostaticEquilibriumContext received an older "
"rotation revision for the same identity."
);
validate_dependency_transition(
m_dependencies.bernoulliConstant,
dependencies.bernoulliConstant,
"HydrostaticEquilibriumContext received an older "
"Bernoulli-constant revision for the same identity."
);
}
const bool staticChanged =
!m_isPrepared ||
dependencies.discretization != m_dependencies.discretization;
const bool enthalpyChanged =
!m_isPrepared || dependencies.enthalpy != m_dependencies.enthalpy;
const bool gravityPotentialChanged =
!m_isPrepared ||
dependencies.gravityPotential != m_dependencies.gravityPotential;
const bool displacementChanged =
!m_isPrepared ||
dependencies.displacement != m_dependencies.displacement;
const bool rotationChanged =
!m_isPrepared || dependencies.rotation != m_dependencies.rotation;
const bool bernoulliConstantChanged =
!m_isPrepared ||
dependencies.bernoulliConstant != m_dependencies.bernoulliConstant;
const bool geometryPreparationRequired =
staticChanged || displacementChanged;
const bool rotationPreparationRequired =
geometryPreparationRequired || rotationChanged;
const bool baseStatePreparationRequired =
rotationPreparationRequired || enthalpyChanged ||
gravityPotentialChanged || bernoulliConstantChanged;
HydrostaticPreparationReport report;
report.preparedStaticDependencies = staticChanged;
report.preparedGeometryState = geometryPreparationRequired;
report.preparedRotationDependencies = rotationPreparationRequired;
report.preparedBaseState = baseStatePreparationRequired;
if (staticChanged || enthalpyChanged) {
m_baseEnthalpyTrue = state.enthalpy;
report.updatedEnthalpy = true;
}
if (staticChanged || gravityPotentialChanged) {
m_baseGravityPotentialTrue = state.gravityPotential;
report.updatedGravityPotential = true;
}
if (geometryPreparationRequired) {
m_displacementTrue = state.displacement;
report.updatedDisplacement = true;
}
if (staticChanged || bernoulliConstantChanged) {
m_bernoulliConstant = state.bernoulliConstant;
report.updatedBernoulliConstant = true;
}
if (report.preparedStaticDependencies) {
++m_statistics.staticPreparations;
}
if (report.preparedGeometryState) {
++m_statistics.geometryPreparations;
}
if (report.preparedRotationDependencies) {
++m_statistics.rotationPreparations;
}
if (report.preparedBaseState) {
++m_statistics.baseStatePreparations;
}
m_dependencies = dependencies;
m_isPrepared = true;
return report;
}
bool HydrostaticEquilibriumContext::IsPrepared() const noexcept {
return m_isPrepared;
}
bool HydrostaticEquilibriumContext::MatchesDependencies(
const HydrostaticEquilibriumDependencies &dependencies
) const noexcept {
return m_isPrepared && dependencies == m_dependencies;
}
const HydrostaticEquilibriumDependencies &
HydrostaticEquilibriumContext::GetDependencies() const {
VerifyPrepared();
return m_dependencies;
}
const HydrostaticPreparationStatistics &
HydrostaticEquilibriumContext::GetPreparationStatistics() const noexcept {
return m_statistics;
}
const mfem::Vector &
HydrostaticEquilibriumContext::GetBaseEnthalpyTrue() const {
VerifyPrepared();
return m_baseEnthalpyTrue;
}
const mfem::Vector &
HydrostaticEquilibriumContext::GetBaseGravityPotentialTrue() const {
VerifyPrepared();
return m_baseGravityPotentialTrue;
}
const mfem::Vector &
HydrostaticEquilibriumContext::GetDisplacementTrue() const {
VerifyPrepared();
return m_displacementTrue;
}
double HydrostaticEquilibriumContext::GetBernoulliConstant() const {
VerifyPrepared();
return m_bernoulliConstant;
}
void HydrostaticEquilibriumContext::VerifyPrepared() const {
MFEM_VERIFY(
m_isPrepared, "HydrostaticEquilibriumContext has not been prepared."
);
}
} // namespace mean_field::operators::context::hydrostatic

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module;
#include "profile.h"
#include <cmath>
#include <cstdint>
#include <limits>
#include <mfem.hpp>
module mean_field;
import :operators.gravity_field;
import :solver.fields;
import :operators.kernels.gravity_field;
namespace {
using namespace mean_field;
int get_state_width(const mfem::Array<int> &state_true_offsets) {
MFEM_VERIFY(
state_true_offsets.Size() >= 2,
"The coupled state requires at least one block."
);
MFEM_VERIFY(
state_true_offsets[0] == 0,
"The coupled state offsets must begin at zero."
);
for (int i = 0; i < state_true_offsets.Size() - 1; ++i) {
MFEM_VERIFY(
state_true_offsets[i + 1] >= state_true_offsets[i],
"The coupled state offsets must be nondecreasing."
);
}
MFEM_VERIFY(
state_true_offsets.Last() > 0, "The coupled state cannot be empty."
);
return state_true_offsets.Last();
}
int get_gravity_residual_height(const fem::FEM &f) {
MFEM_VERIFY(
f.gravityFluxFes != nullptr,
"GravityFieldOperator requires the gravity-gradient finite-element "
"space (RT: Raviart-Thomas)."
);
MFEM_VERIFY(
f.gravityPotentialFes != nullptr,
"GravityFieldOperator requires the gravity-potential "
"finite-element "
"space (L2: Lebesgue "
"space of square-integrable functions)."
);
return f.gravityFluxFes->GetTrueVSize() +
f.gravityPotentialFes->GetTrueVSize();
}
mfem::Array<int> make_gravity_residual_offsets(const fem::FEM &f) {
mfem::Array<int> offsets(operators::gravity_residual_block_count + 1);
offsets[0] = 0;
offsets[1] = f.gravityFluxFes->GetTrueVSize();
offsets[2] = offsets[1] + f.gravityPotentialFes->GetTrueVSize();
return offsets;
}
template <int index>
int get_state_block_size(
const mfem::Array<int> &state_true_offsets,
const utils::blocks::value_block<index>
) {
MFEM_VERIFY(
index + 1 < state_true_offsets.Size(),
"Value block is not present in the state offsets."
);
return state_true_offsets[index + 1] - state_true_offsets[index];
}
void validate_state_offsets(
const fem::FEM &f,
const mfem::Array<int> &state_true_offsets
) {
MFEM_VERIFY(
f.densityFes != nullptr,
"GravityFieldOperator requires the density finite-element space."
);
MFEM_VERIFY(
f.displacementFes != nullptr, "GravityFieldOperator requires the "
"displacement finite-element space."
);
using form = utils::blocks::gravity_field_form;
constexpr auto density_block = utils::blocks::get_value_block<form>(
utils::blocks::density_field.mass_term
);
constexpr auto displacement_block =
utils::blocks::get_value_block<form>(
utils::blocks::displacement_field.geometry_term
);
constexpr auto gravity_gradient_block =
utils::blocks::get_value_block<form>(
utils::blocks::gravity_field.gradient_term
);
constexpr auto gravity_potential_block =
utils::blocks::get_value_block<form>(
utils::blocks::gravity_field.poisson_term
);
MFEM_VERIFY(
state_true_offsets.Size() == form::value_block_count + 1,
"The gravity state offsets do not match gravity_field_form."
);
MFEM_VERIFY(
get_state_block_size(state_true_offsets, density_block) ==
f.densityFes->GetTrueVSize(),
"The density block does not match the density finite-element space."
);
MFEM_VERIFY(
get_state_block_size(state_true_offsets, displacement_block) ==
f.displacementFes->GetTrueVSize(),
"The displacement block does not match the displacement "
"finite-element "
"space."
);
MFEM_VERIFY(
get_state_block_size(state_true_offsets, gravity_gradient_block) ==
f.gravityFluxFes->GetTrueVSize(),
"The gravity-gradient block does not match the RT finite-element "
"space."
);
MFEM_VERIFY(
get_state_block_size(state_true_offsets, gravity_potential_block) ==
f.gravityPotentialFes->GetTrueVSize(),
"The gravity-potential block does not match the potential "
"finite-element space."
);
}
void validate_gravity_context(const fem::FEM &f) {
MFEM_VERIFY(
f.gravityContext.b_form != nullptr,
"GravityFieldOperator requires the divergence operator."
);
MFEM_VERIFY(
f.gravityContext.BT != nullptr,
"GravityFieldOperator requires the transpose divergence operator."
);
MFEM_VERIFY(
f.quadratureFactory != nullptr,
"GravityFieldOperator requires the quadrature-rule factory."
);
}
template <int index>
mfem::Vector make_read_only_value_view(
const mfem::Vector &vector,
const mfem::Array<int> &offsets,
const utils::blocks::value_block<index>
) {
MFEM_VERIFY(
index + 1 < offsets.Size(),
"Value block is not present in the supplied offset array."
);
const int begin = offsets[index];
const int size = offsets[index + 1] - begin;
MFEM_VERIFY(
vector.Size() == offsets.Last(),
"Vector size does not match the value-block offsets."
);
return mfem::Vector(
const_cast<mfem::real_t *>(vector.GetData()) + begin, size
);
}
template <int index>
mfem::Vector make_read_only_residual_view(
const mfem::Vector &vector,
const mfem::Array<int> &offsets,
const utils::blocks::residual_block<index> block
) {
const int block_id = block;
const int begin = offsets[block_id];
const int size = offsets[block_id + 1] - begin;
MFEM_VERIFY(
vector.Size() == offsets.Last(),
"The vector does not match the residual-block layout."
);
mfem::Vector view;
view.MakeRef(const_cast<mfem::Vector &>(vector), begin, size);
return view;
}
template <int index>
mfem::Vector make_residual_view(
mfem::Vector &vector,
const mfem::Array<int> &offsets,
const utils::blocks::residual_block<index>
) {
MFEM_VERIFY(
index + 1 < offsets.Size(),
"Residual block is not present in the supplied offset array."
);
const int begin = offsets[index];
const int size = offsets[index + 1] - begin;
MFEM_VERIFY(
vector.Size() == offsets.Last(),
"Vector size does not match the residual-block offsets."
);
return mfem::Vector(vector.GetData() + begin, size);
}
} // namespace
namespace mean_field::operators {
GravityFieldOperator::GravityFieldOperator(
fem::FEM &f,
const mapping::DomainMapperStateless &domain_mapper,
context::gravity_field::GravityFieldLinearizationContext
&linearization_context,
const mfem::Array<int> &state_true_offsets,
GravityFieldJacobianOperator &jacobian
)
: Operator(
get_gravity_residual_height(f),
get_state_width(state_true_offsets)
),
m_fem(f),
m_domain_mapper(domain_mapper),
m_linearization_context(linearization_context),
m_state_true_offsets(state_true_offsets),
m_residual_true_offsets(make_gravity_residual_offsets(f)),
m_jacobian(jacobian) {
MFEM_VERIFY(f.mesh != nullptr, "GravityFieldOperator requires a mesh.");
MFEM_VERIFY(
f.displacementFes != nullptr, "GravityFieldOperator requires the "
"displacement finite-element space."
);
MFEM_VERIFY(
f.smesh.exterior_coordinate != nullptr,
"GravityFieldOperator requires the STROID exterior coordinate."
);
MFEM_VERIFY(
f.smesh.exterior_coordinate->space != nullptr,
"GravityFieldOperator requires the exterior-coordinate "
"finite-element "
"space."
);
MFEM_VERIFY(
f.smesh.exterior_coordinate->values != nullptr,
"GravityFieldOperator requires the exterior-coordinate values."
);
MFEM_VERIFY(
domain_mapper.GetDimension() == f.mesh->Dimension(),
"GravityFieldOperator received a domain mapper with the wrong "
"dimension."
);
validate_state_offsets(f, m_state_true_offsets);
validate_gravity_context(f);
bool has_vacuum_domain = false;
for (int i = 0; i < f.mesh->attributes.Size(); ++i) {
if (f.mesh->attributes[i] ==
domain_mapper.GetVacuumElementAttribute()) {
has_vacuum_domain = true;
break;
}
}
MFEM_VERIFY(
has_vacuum_domain,
"GravityFieldOperator requires a compactified vacuum domain."
);
MFEM_VERIFY(
m_residual_true_offsets.Last() == Height(),
"The gravity residual offsets do not match the operator height."
);
MFEM_VERIFY(
m_state_true_offsets.Last() == Width(),
"The coupled state offsets do not match the operator width."
);
}
context::gravity_field::GravityFieldPreparationReport
GravityFieldOperator::Prepare(
const mfem::Vector &state,
const context::gravity_field::GravityFieldRevisions &revisions
) {
using form = utils::blocks::gravity_field_form;
constexpr auto density_block = utils::blocks::get_value_block<form>(
utils::blocks::density_field.mass_term
);
constexpr auto displacement_block =
utils::blocks::get_value_block<form>(
utils::blocks::displacement_field.geometry_term
);
constexpr auto gravity_gradient_block =
utils::blocks::get_value_block<form>(
utils::blocks::gravity_field.gradient_term
);
constexpr auto gravity_potential_block =
utils::blocks::get_value_block<form>(
utils::blocks::gravity_field.poisson_term
);
MFEM_VERIFY(
state.Size() == Width(), "GravityFieldOperator received a "
"preparation state with the wrong size."
);
const mfem::Vector density = make_read_only_value_view(
state, m_state_true_offsets, density_block
);
const mfem::Vector displacement = make_read_only_value_view(
state, m_state_true_offsets, displacement_block
);
const mfem::Vector gravity_gradient = make_read_only_value_view(
state, m_state_true_offsets, gravity_gradient_block
);
const mfem::Vector gravity_potential = make_read_only_value_view(
state, m_state_true_offsets, gravity_potential_block
);
return m_linearization_context.Prepare(
{.density = density,
.displacement = displacement,
.gravity_gradient = gravity_gradient,
.gravity_potential = gravity_potential},
revisions
);
}
const mfem::Array<int> &
GravityFieldOperator::GetStateTrueOffsets() const noexcept {
return m_state_true_offsets;
}
const mfem::Array<int> &
GravityFieldOperator::GetResidualTrueOffsets() const noexcept {
return m_residual_true_offsets;
}
void GravityFieldOperator::ApplyGravityUnknowns(
const mfem::Vector &gravity_gradient,
const mfem::Vector &gravity_potential,
const context::gravity_field::GravityFieldGeometryContext
&geometry_context,
mfem::Vector &action
) const {
using form = utils::blocks::gravity_field_form;
constexpr auto gravity_gradient_residual_block =
utils::blocks::get_residual_block<form>(
utils::blocks::gravity_field.gradient_term
);
constexpr auto gravity_poisson_residual_block =
utils::blocks::get_residual_block<form>(
utils::blocks::gravity_field.poisson_term
);
MFEM_VERIFY(
geometry_context.IsPrepared(),
"GravityFieldOperator received an unprepared geometry context."
);
MFEM_VERIFY(
gravity_gradient.Size() == m_fem.gravityFluxFes->GetTrueVSize(),
"GravityFieldOperator received a gravity-gradient vector with the "
"wrong size."
);
MFEM_VERIFY(
gravity_potential.Size() ==
m_fem.gravityPotentialFes->GetTrueVSize(),
"GravityFieldOperator received a gravity-potential vector with the "
"wrong size."
);
action.SetSize(Height());
action = 0.0;
mfem::Vector gravity_gradient_action = make_residual_view(
action, m_residual_true_offsets, gravity_gradient_residual_block
);
mfem::Vector gravity_poisson_action = make_residual_view(
action, m_residual_true_offsets, gravity_poisson_residual_block
);
mfem::Vector transpose_divergence_action(
gravity_gradient_action.Size()
);
geometry_context.GetMassOperator().Mult(
gravity_gradient, gravity_gradient_action
);
m_fem.gravityContext.BT->Mult(
gravity_potential, transpose_divergence_action
);
gravity_gradient_action += transpose_divergence_action;
m_fem.gravityContext.b_form->Mult(
gravity_gradient, gravity_poisson_action
);
}
void GravityFieldOperator::ApplyDensitySource(
const mfem::Vector &density,
const context::gravity_field::GravityFieldGeometryContext
&geometry_context,
mfem::Vector &action
) const {
using form = utils::blocks::gravity_field_form;
constexpr auto gravity_poisson_residual_block =
utils::blocks::get_residual_block<form>(
utils::blocks::gravity_field.poisson_term
);
MFEM_VERIFY(
geometry_context.IsPrepared(),
"GravityFieldOperator received an unprepared geometry context."
);
MFEM_VERIFY(
density.Size() == m_fem.densityFes->GetTrueVSize(),
"GravityFieldOperator received a density vector with the wrong "
"size."
);
action.SetSize(Height());
action = 0.0;
mfem::Vector gravity_poisson_action = make_residual_view(
action, m_residual_true_offsets, gravity_poisson_residual_block
);
geometry_context.GetSourceOperator().Mult(
density, gravity_poisson_action
);
}
void GravityFieldOperator::Mult(
const mfem::Vector &state,
mfem::Vector &residual
) const {
MEAN_FIELD_PROFILE_SCOPE("GravityFieldOperator::Mult");
using form = utils::blocks::gravity_field_form;
constexpr auto density_block = utils::blocks::get_value_block<form>(
utils::blocks::density_field.mass_term
);
constexpr auto gravity_gradient_block =
utils::blocks::get_value_block<form>(
utils::blocks::gravity_field.gradient_term
);
constexpr auto gravity_potential_block =
utils::blocks::get_value_block<form>(
utils::blocks::gravity_field.poisson_term
);
MFEM_VERIFY(
state.Size() == Width(),
"GravityFieldOperator received a state with the wrong size."
);
MFEM_VERIFY(
m_linearization_context.IsPrepared(),
"GravityFieldOperator must be prepared before Mult is called."
);
const mfem::Vector density = make_read_only_value_view(
state, m_state_true_offsets, density_block
);
const mfem::Vector gravity_gradient = make_read_only_value_view(
state, m_state_true_offsets, gravity_gradient_block
);
const mfem::Vector gravity_potential = make_read_only_value_view(
state, m_state_true_offsets, gravity_potential_block
);
const context::gravity_field::GravityFieldGeometryContext
&geometry_context = m_linearization_context.GetGeometryContext();
mfem::Vector source;
ApplyGravityUnknowns(
gravity_gradient, gravity_potential, geometry_context, residual
);
ApplyDensitySource(density, geometry_context, source);
residual -= source;
}
context::gravity_field::GravityFieldLinearizationContext &
GravityFieldOperator::GetLinearizationContext() noexcept {
return m_linearization_context;
}
const context::gravity_field::GravityFieldLinearizationContext &
GravityFieldOperator::GetLinearizationContext() const noexcept {
return m_linearization_context;
}
mfem::Operator &
GravityFieldOperator::GetGradient(const mfem::Vector &state) const {
MFEM_VERIFY(
state.Size() == Width(), "GravityFieldOperator received a "
"linearization state with the wrong size."
);
MFEM_VERIFY(
m_linearization_context.IsPrepared(),
"GravityFieldOperator must be prepared before GetGradient is "
"called."
);
return m_jacobian;
}
ReducedGravityFieldOperator::ReducedGravityFieldOperator(
GravityFieldOperator &gravity_field_operator,
context::gravity_field::GravityFieldGeometryContext
&gravity_field_geometry_context,
const mfem::Vector &displacement
)
: Operator(
gravity_field_operator.Height(),
gravity_field_operator.Height()
),
m_gravity_field_operator(gravity_field_operator),
m_gravity_true_offsets(
gravity_field_operator.GetResidualTrueOffsets()
),
m_gravity_field_geometry_context(gravity_field_geometry_context) {
using form = utils::blocks::gravity_field_form;
constexpr auto gravity_gradient_block =
utils::blocks::get_value_block<form>(
utils::blocks::gravity_field.gradient_term
);
constexpr auto gravity_potential_block =
utils::blocks::get_value_block<form>(
utils::blocks::gravity_field.poisson_term
);
constexpr auto gravity_gradient_residual_block =
utils::blocks::get_residual_block<form>(
utils::blocks::gravity_field.gradient_term
);
constexpr auto gravity_poisson_residual_block =
utils::blocks::get_residual_block<form>(
utils::blocks::gravity_field.poisson_term
);
const mfem::Array<int> &state_offsets =
m_gravity_field_operator.GetStateTrueOffsets();
MFEM_VERIFY(
state_offsets.Size() == form::value_block_count + 1,
"ReducedGravityFieldOperator received an invalid full-state layout."
);
MFEM_VERIFY(
m_gravity_true_offsets.Size() == form::residual_block_count + 1,
"ReducedGravityFieldOperator received an invalid gravity-residual "
"layout."
);
MFEM_VERIFY(
state_offsets[0] == 0, "The full-state offsets must begin at zero."
);
MFEM_VERIFY(
m_gravity_true_offsets[0] == 0,
"The reduced gravity offsets must begin at zero."
);
MFEM_VERIFY(
state_offsets.Last() == m_gravity_field_operator.Width(),
"The full-state offsets do not match the gravity-field operator "
"width."
);
MFEM_VERIFY(
m_gravity_true_offsets.Last() == m_gravity_field_operator.Height(),
"The reduced gravity offsets do not match the gravity-field "
"operator "
"height."
);
MFEM_VERIFY(
Width() == Height(), "ReducedGravityFieldOperator must be square."
);
const int full_gradient_size =
state_offsets[static_cast<int>(gravity_gradient_block) + 1] -
state_offsets[gravity_gradient_block];
const int full_potential_size =
state_offsets[static_cast<int>(gravity_potential_block) + 1] -
state_offsets[gravity_potential_block];
const int reduced_gradient_size =
m_gravity_true_offsets
[static_cast<int>(gravity_gradient_residual_block) + 1] -
m_gravity_true_offsets[gravity_gradient_residual_block];
const int reduced_potential_size =
m_gravity_true_offsets
[static_cast<int>(gravity_poisson_residual_block) + 1] -
m_gravity_true_offsets[gravity_poisson_residual_block];
MFEM_VERIFY(
full_gradient_size == reduced_gradient_size,
"The reduced gravity-gradient block does not match the full-state "
"gravity-gradient block."
);
MFEM_VERIFY(
full_potential_size == reduced_potential_size,
"The reduced gravity-potential block does not match the Poisson "
"residual block."
);
SetDisplacement(displacement);
}
void ReducedGravityFieldOperator::SetDisplacement(
const mfem::Vector &displacement
) {
ValidateDisplacement(displacement);
context::gravity_field::DiscretizationRevision discretization_revision;
context::gravity_field::DisplacementRevision displacement_revision;
if (m_gravity_field_geometry_context.IsPrepared()) {
discretization_revision =
m_gravity_field_geometry_context.GetDiscretizationRevision();
displacement_revision =
m_gravity_field_geometry_context.GetDisplacementRevision();
MFEM_VERIFY(
displacement_revision.value <
std::numeric_limits<std::uint64_t>::max(),
"The reduced gravity displacement revision has overflowed."
);
++displacement_revision.value;
}
m_gravity_field_geometry_context.Prepare(
displacement, discretization_revision, displacement_revision
);
}
const mfem::Vector &ReducedGravityFieldOperator::GetDisplacement() const {
return m_gravity_field_geometry_context.GetDisplacement();
}
void ReducedGravityFieldOperator::BuildRightHandSide(
const mfem::Vector &density,
mfem::Vector &right_hand_side
) const {
ValidateDensity(density);
m_gravity_field_operator.ApplyDensitySource(
density, m_gravity_field_geometry_context, right_hand_side
);
MFEM_VERIFY(
right_hand_side.Size() == Height(),
"ReducedGravityFieldOperator produced a right-hand side with the "
"wrong "
"size."
);
}
void ReducedGravityFieldOperator::Mult(
const mfem::Vector &gravity_state,
mfem::Vector &action
) const {
MEAN_FIELD_PROFILE_SCOPE("ReducedGravityFieldOperator::Mult");
using form = utils::blocks::gravity_field_form;
constexpr auto gravity_gradient_residual_block =
utils::blocks::get_residual_block<form>(
utils::blocks::gravity_field.gradient_term
);
constexpr auto gravity_poisson_residual_block =
utils::blocks::get_residual_block<form>(
utils::blocks::gravity_field.poisson_term
);
ValidateGravityState(gravity_state);
const mfem::Vector gravity_gradient_true = make_read_only_residual_view(
gravity_state, m_gravity_true_offsets,
gravity_gradient_residual_block
);
const mfem::Vector gravity_potential_true =
make_read_only_residual_view(
gravity_state, m_gravity_true_offsets,
gravity_poisson_residual_block
);
m_gravity_field_operator.ApplyGravityUnknowns(
gravity_gradient_true, gravity_potential_true,
m_gravity_field_geometry_context, action
);
MFEM_VERIFY(
action.Size() == Height(), "ReducedGravityFieldOperator produced "
"an action with the wrong size."
);
}
GravityFieldOperator &
ReducedGravityFieldOperator::GetGravityFieldOperator() noexcept {
return m_gravity_field_operator;
}
const GravityFieldOperator &
ReducedGravityFieldOperator::GetGravityFieldOperator() const noexcept {
return m_gravity_field_operator;
}
context::gravity_field::GravityFieldGeometryContext &
ReducedGravityFieldOperator::GetGeometryContext() noexcept {
return m_gravity_field_geometry_context;
}
const context::gravity_field::GravityFieldGeometryContext &
ReducedGravityFieldOperator::GetGeometryContext() const noexcept {
return m_gravity_field_geometry_context;
}
const mfem::Array<int> &
ReducedGravityFieldOperator::GetGravityTrueOffsets() const noexcept {
return m_gravity_true_offsets;
}
void ReducedGravityFieldOperator::ValidateDisplacement(
const mfem::Vector &displacement
) const {
using form = utils::blocks::gravity_field_form;
constexpr auto displacement_block =
utils::blocks::get_value_block<form>(
utils::blocks::displacement_field.geometry_term
);
const mfem::Array<int> &state_offsets =
m_gravity_field_operator.GetStateTrueOffsets();
const int expected_size =
state_offsets[static_cast<int>(displacement_block) + 1] -
state_offsets[displacement_block];
MFEM_VERIFY(
displacement.Size() == expected_size,
"ReducedGravityFieldOperator received a displacement with the "
"wrong "
"size."
);
for (int i = 0; i < displacement.Size(); ++i) {
MFEM_VERIFY(
std::isfinite(displacement(i)),
"ReducedGravityFieldOperator received a non-finite "
"displacement "
"value."
);
}
}
void ReducedGravityFieldOperator::ValidateDensity(
const mfem::Vector &density
) const {
using form = utils::blocks::gravity_field_form;
constexpr auto density_block = utils::blocks::get_value_block<form>(
utils::blocks::density_field.mass_term
);
const mfem::Array<int> &state_offsets =
m_gravity_field_operator.GetStateTrueOffsets();
const int expected_size =
state_offsets[static_cast<int>(density_block) + 1] -
state_offsets[density_block];
MFEM_VERIFY(
density.Size() == expected_size,
"ReducedGravityFieldOperator received a density with the wrong "
"size."
);
}
void ReducedGravityFieldOperator::ValidateGravityState(
const mfem::Vector &gravity_state
) const {
MFEM_VERIFY(
gravity_state.Size() == Width(),
"ReducedGravityFieldOperator received "
"a gravity state with the wrong size."
);
}
} // namespace mean_field::operators

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module;
#include <mfem.hpp>
module mean_field;
import :operators.gravity_field_jacobian;
import :operators.kernels.gravity_field;
import :utils.blocks;
namespace {
template <int index>
mfem::Vector make_read_only_value_view(
const mfem::Vector &vector,
const mfem::Array<int> &offsets,
const mean_field::utils::blocks::value_block<index>
) {
const int offset = offsets[index];
const int size = offsets[index + 1] - offset;
return mfem::Vector(
const_cast<mfem::real_t *>(vector.GetData()) + offset, size
);
}
template <int index>
mfem::Vector make_residual_view(
mfem::Vector &vector,
const mfem::Array<int> &offsets,
const mean_field::utils::blocks::residual_block<index>
) {
const int offset = offsets[index];
const int size = offsets[index + 1] - offset;
return mfem::Vector(vector.GetData() + offset, size);
}
template <int index>
int get_block_size(
const mfem::Array<int> &offsets,
const mean_field::utils::blocks::value_block<index>
) {
return offsets[index + 1] - offsets[index];
}
template <int index>
int get_block_size(
const mfem::Array<int> &offsets,
const mean_field::utils::blocks::residual_block<index>
) {
return offsets[index + 1] - offsets[index];
}
void validate_offsets(
const mfem::Array<int> &offsets,
const int block_count,
const char *message
) {
MFEM_VERIFY(offsets.Size() == block_count + 1, message);
MFEM_VERIFY(offsets[0] == 0, "Block offsets must begin at zero.");
for (int i = 0; i < block_count; ++i)
MFEM_VERIFY(
offsets[i + 1] >= offsets[i],
"Block offsets must be nondecreasing."
);
}
void validate_layout(
const mean_field::fem::FEM &f,
const mfem::Array<int> &state_offsets,
const mfem::Array<int> &residual_offsets
) {
using form = mean_field::utils::blocks::gravity_field_form;
constexpr auto density_block =
mean_field::utils::blocks::get_value_block<form>(
mean_field::utils::blocks::density_field.mass_term
);
constexpr auto displacement_block =
mean_field::utils::blocks::get_value_block<form>(
mean_field::utils::blocks::displacement_field.geometry_term
);
constexpr auto gravity_gradient_block =
mean_field::utils::blocks::get_value_block<form>(
mean_field::utils::blocks::gravity_field.gradient_term
);
constexpr auto gravity_potential_block =
mean_field::utils::blocks::get_value_block<form>(
mean_field::utils::blocks::gravity_field.poisson_term
);
constexpr auto gravity_gradient_residual_block =
mean_field::utils::blocks::get_residual_block<form>(
mean_field::utils::blocks::gravity_field.gradient_term
);
constexpr auto gravity_poisson_residual_block =
mean_field::utils::blocks::get_residual_block<form>(
mean_field::utils::blocks::gravity_field.poisson_term
);
validate_offsets(
state_offsets, form::value_block_count,
"Gravity Jacobian state offsets do not match the gravity field "
"form."
);
validate_offsets(
residual_offsets, form::residual_block_count,
"Gravity Jacobian residual offsets do not match the gravity field "
"form."
);
MFEM_VERIFY(
get_block_size(state_offsets, density_block) ==
f.densityFes->GetTrueVSize(),
"The Jacobian density block has the wrong size."
);
MFEM_VERIFY(
get_block_size(state_offsets, displacement_block) ==
f.displacementFes->GetTrueVSize(),
"The Jacobian displacement block has the wrong size."
);
MFEM_VERIFY(
get_block_size(state_offsets, gravity_gradient_block) ==
f.gravityFluxFes->GetTrueVSize(),
"The Jacobian gravity-gradient block has the wrong size."
);
MFEM_VERIFY(
get_block_size(state_offsets, gravity_potential_block) ==
f.gravityPotentialFes->GetTrueVSize(),
"The Jacobian gravity-potential block has the wrong size."
);
MFEM_VERIFY(
get_block_size(residual_offsets, gravity_gradient_residual_block) ==
f.gravityFluxFes->GetTrueVSize(),
"The Jacobian gradient-residual block has the wrong size."
);
MFEM_VERIFY(
get_block_size(residual_offsets, gravity_poisson_residual_block) ==
f.gravityPotentialFes->GetTrueVSize(),
"The Jacobian Poisson-residual block has the wrong size."
);
}
} // namespace
namespace mean_field::operators {
GravityFieldJacobianOperator::GravityFieldJacobianOperator(
fem::FEM &f,
const mapping::DomainMapperStateless &domain_mapper,
const context::gravity_field::GravityFieldLinearizationContext
&linearization_context,
const mfem::Array<int> &state_true_offsets,
const mfem::Array<int> &residual_true_offsets
)
: Operator(
residual_true_offsets.Last(),
state_true_offsets.Last()
),
m_fem(f),
m_domain_mapper(domain_mapper),
m_linearization_context(linearization_context),
m_state_true_offsets(state_true_offsets),
m_residual_true_offsets(residual_true_offsets) {
MFEM_VERIFY(
f.densityFes != nullptr,
"GravityFieldJacobianOperator requires the density finite-element "
"space."
);
MFEM_VERIFY(
f.gravityPotentialFes != nullptr,
"GravityFieldJacobianOperator requires the gravity-potential "
"finite-element space."
);
MFEM_VERIFY(
f.gravityFluxFes != nullptr,
"GravityFieldJacobianOperator requires the "
"gravity-gradient finite-element space."
);
MFEM_VERIFY(
f.displacementFes != nullptr,
"GravityFieldJacobianOperator requires the "
"displacement finite-element space."
);
MFEM_VERIFY(
f.gravityContext.b_form != nullptr,
"GravityFieldJacobianOperator requires the divergence operator."
);
MFEM_VERIFY(
f.gravityContext.BT != nullptr,
"GravityFieldJacobianOperator requires the transpose divergence "
"operator."
);
MFEM_VERIFY(
f.quadratureFactory != nullptr,
"GravityFieldJacobianOperator requires the quadrature-rule factory."
);
MFEM_VERIFY(
domain_mapper.GetDimension() == f.mesh->Dimension(),
"GravityFieldJacobianOperator received a domain mapper with the "
"wrong "
"dimension."
);
validate_layout(f, m_state_true_offsets, m_residual_true_offsets);
}
void GravityFieldJacobianOperator::Mult(
const mfem::Vector &direction,
mfem::Vector &action
) const {
MFEM_VERIFY(
m_linearization_context.IsPrepared(),
"GravityFieldJacobianOperator requires a prepared linearization "
"context."
);
MFEM_VERIFY(
direction.Size() == Width(),
"GravityFieldJacobianOperator received a direction with the wrong "
"size."
);
using form = utils::blocks::gravity_field_form;
constexpr auto density_block = utils::blocks::get_value_block<form>(
utils::blocks::density_field.mass_term
);
constexpr auto displacement_block =
utils::blocks::get_value_block<form>(
utils::blocks::displacement_field.geometry_term
);
constexpr auto gravity_gradient_block =
utils::blocks::get_value_block<form>(
utils::blocks::gravity_field.gradient_term
);
constexpr auto gravity_potential_block =
utils::blocks::get_value_block<form>(
utils::blocks::gravity_field.poisson_term
);
constexpr auto gravity_gradient_residual_block =
utils::blocks::get_residual_block<form>(
utils::blocks::gravity_field.gradient_term
);
constexpr auto gravity_poisson_residual_block =
utils::blocks::get_residual_block<form>(
utils::blocks::gravity_field.poisson_term
);
const context::gravity_field::GravityFieldGeometryContext
&geometry_context = m_linearization_context.GetGeometryContext();
const mfem::Vector &density = m_linearization_context.GetDensity();
const mfem::Vector &displacement = geometry_context.GetDisplacement();
const mfem::Vector &gravity_gradient =
m_linearization_context.GetGravityGradient();
const mfem::Vector density_direction = make_read_only_value_view(
direction, m_state_true_offsets, density_block
);
const mfem::Vector displacement_direction = make_read_only_value_view(
direction, m_state_true_offsets, displacement_block
);
const mfem::Vector gravity_gradient_direction =
make_read_only_value_view(
direction, m_state_true_offsets, gravity_gradient_block
);
const mfem::Vector gravity_potential_direction =
make_read_only_value_view(
direction, m_state_true_offsets, gravity_potential_block
);
action.SetSize(Height());
action = 0.0;
mfem::Vector gravity_gradient_action = make_residual_view(
action, m_residual_true_offsets, gravity_gradient_residual_block
);
mfem::Vector gravity_poisson_action = make_residual_view(
action, m_residual_true_offsets, gravity_poisson_residual_block
);
mfem::Vector transpose_divergence_action;
mfem::Vector source_action;
mfem::Vector mass_variation_action;
mfem::Vector source_variation_action;
geometry_context.GetMassOperator().Mult(
gravity_gradient_direction, gravity_gradient_action
);
geometry_context.GetSourceOperator().Mult(
density_direction, source_action
);
kernels::apply_mapped_hdiv_mass_variation(
m_fem, m_domain_mapper, gravity_gradient, displacement,
displacement_direction, mass_variation_action
);
kernels::apply_mapped_source_variation(
m_fem, m_domain_mapper, density, displacement,
displacement_direction, source_variation_action
);
transpose_divergence_action.SetSize(gravity_gradient_action.Size());
m_fem.gravityContext.BT->Mult(
gravity_potential_direction, transpose_divergence_action
);
gravity_gradient_action += transpose_divergence_action;
gravity_gradient_action += mass_variation_action;
m_fem.gravityContext.b_form->Mult(
gravity_gradient_direction, gravity_poisson_action
);
gravity_poisson_action -= source_action;
gravity_poisson_action -= source_variation_action;
}
const context::gravity_field::GravityFieldLinearizationContext &
GravityFieldJacobianOperator::GetLinearizationContext() const noexcept {
return m_linearization_context;
}
} // namespace mean_field::operators

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module;
#include <array>
#include <cmath>
#include <limits>
#include <mfem.hpp>
module mean_field;
import :operators.kernels.barotropic_closure;
namespace {
enum class ClosureAction { residual, density, enthalpy };
void true_to_local(
const mfem::ParFiniteElementSpace &finiteElementSpace,
const mfem::Vector &trueVector,
mfem::Vector &localVector
) {
MFEM_VERIFY(
trueVector.Size() == finiteElementSpace.GetTrueVSize(),
"True vector has the wrong size."
);
localVector.SetSize(finiteElementSpace.GetVSize());
const mfem::Operator *prolongation =
finiteElementSpace.GetProlongationMatrix();
if (prolongation != nullptr) {
prolongation->Mult(trueVector, localVector);
} else {
localVector = trueVector;
}
}
void local_to_true(
const mfem::ParFiniteElementSpace &finiteElementSpace,
const mfem::Vector &localVector,
mfem::Vector &trueVector
) {
MFEM_VERIFY(
localVector.Size() == finiteElementSpace.GetVSize(),
"Local vector has the wrong size."
);
trueVector.SetSize(finiteElementSpace.GetTrueVSize());
trueVector = 0.0;
const mfem::Operator *prolongation =
finiteElementSpace.GetProlongationMatrix();
if (prolongation != nullptr) {
prolongation->MultTranspose(localVector, trueVector);
} else {
trueVector = localVector;
}
}
int get_eos_extra_order(
const mean_field::physics::PolytropicBarotrope &barotrope
) {
const double extraOrder =
(barotrope.polytropic_index() - 1.0) *
static_cast<double>(
mean_field::field::Enthalpy::Scalar::familyOrder
);
MFEM_VERIFY(
std::isfinite(extraOrder) && extraOrder >= 0.0 &&
extraOrder <=
static_cast<double>(std::numeric_limits<int>::max()),
"The EOS effective polynomial order is invalid."
);
return static_cast<int>(std::ceil(extraOrder));
}
const mfem::IntegrationRule &get_eos_rule(
const mean_field::fem::FEM &f,
const mean_field::physics::PolytropicBarotrope &barotrope,
const mfem::FiniteElement &densityElement,
const mfem::FiniteElement &enthalpyElement,
const mfem::ElementTransformation &transformation
) {
using EnthalpyField =
mean_field::field::Field<mean_field::field::Enthalpy>;
MFEM_VERIFY(
densityElement.GetOrder() ==
mean_field::field::Density::Scalar::familyOrder,
"The EOS test element does not match the "
"registered density field."
);
MFEM_VERIFY(
enthalpyElement.GetOrder() ==
mean_field::field::Enthalpy::Scalar::familyOrder,
"The EOS trial element does not match the "
"registered enthalpy field."
);
const mean_field::quadrature::Query query = EnthalpyField::make_query<
mean_field::field::Enthalpy::Form::EosClosureSource>(
mean_field::quadrature::QuadratureRole::discretization,
transformation.OrderW(),
std::array<int, 1>{get_eos_extra_order(barotrope)},
mean_field::utils::DOMAINS::STELLAR,
mean_field::quadrature::MappingKind::general
);
const auto resolution =
f.quadratureFactory->get(query, transformation.GetGeometryType());
MFEM_VERIFY(
resolution.integration_rule != nullptr,
"The quadrature policy did not return an "
"EOS-closure integration rule."
);
return *resolution.integration_rule;
}
void validate_common_inputs(
const mean_field::fem::FEM &f,
const mean_field::mapping::DomainMapperStateless &domainMapper,
const mfem::Vector &displacementTrue
) {
MFEM_VERIFY(
f.mesh != nullptr, "The EOS closure kernel requires a mesh."
);
MFEM_VERIFY(
f.densityFes != nullptr,
"The EOS closure kernel requires the density "
"finite-element space."
);
MFEM_VERIFY(
f.enthalpyFes != nullptr,
"The EOS closure kernel requires the enthalpy "
"finite-element space."
);
MFEM_VERIFY(
f.displacementFes != nullptr,
"The EOS closure kernel requires the displacement "
"finite-element space."
);
MFEM_VERIFY(
f.compactificationFes != nullptr,
"The EOS closure kernel requires the "
"compactification finite-element space."
);
MFEM_VERIFY(
f.compactificationCoordinate != nullptr,
"The EOS closure kernel requires the "
"compactification coordinate."
);
MFEM_VERIFY(
f.quadratureFactory != nullptr,
"The EOS closure kernel requires the quadrature "
"rule factory."
);
MFEM_VERIFY(
displacementTrue.Size() == f.displacementFes->GetTrueVSize(),
"The displacement vector has the wrong size."
);
MFEM_VERIFY(
domainMapper.GetDimension() == f.mesh->Dimension(),
"The domain-mapper dimension does not match "
"the mesh dimension."
);
}
void apply_closure_action(
const mean_field::fem::FEM &f,
const mean_field::mapping::DomainMapperStateless &domainMapper,
const mean_field::physics::PolytropicBarotrope &barotrope,
const ClosureAction closureAction,
const mfem::Vector *densityInputTrue,
const mfem::Vector *baseEnthalpyTrue,
const mfem::Vector *enthalpyVariationTrue,
const mfem::Vector &displacementTrue,
mfem::Vector &action
) {
validate_common_inputs(f, domainMapper, displacementTrue);
if (closureAction == ClosureAction::residual ||
closureAction == ClosureAction::density) {
MFEM_VERIFY(
densityInputTrue != nullptr &&
densityInputTrue->Size() == f.densityFes->GetTrueVSize(),
"The density input has the wrong size."
);
}
if (closureAction == ClosureAction::residual ||
closureAction == ClosureAction::enthalpy) {
MFEM_VERIFY(
baseEnthalpyTrue != nullptr &&
baseEnthalpyTrue->Size() == f.enthalpyFes->GetTrueVSize(),
"The base enthalpy has the wrong size."
);
}
if (closureAction == ClosureAction::enthalpy) {
MFEM_VERIFY(
enthalpyVariationTrue != nullptr &&
enthalpyVariationTrue->Size() ==
f.enthalpyFes->GetTrueVSize(),
"The enthalpy variation has the wrong size."
);
}
mfem::Vector densityInputLocal;
mfem::Vector baseEnthalpyLocal;
mfem::Vector enthalpyVariationLocal;
mfem::Vector displacementLocal;
if (densityInputTrue != nullptr) {
true_to_local(*f.densityFes, *densityInputTrue, densityInputLocal);
}
if (baseEnthalpyTrue != nullptr) {
true_to_local(*f.enthalpyFes, *baseEnthalpyTrue, baseEnthalpyLocal);
}
if (enthalpyVariationTrue != nullptr) {
true_to_local(
*f.enthalpyFes, *enthalpyVariationTrue, enthalpyVariationLocal
);
}
true_to_local(*f.displacementFes, displacementTrue, displacementLocal);
mfem::Vector localAction(f.densityFes->GetVSize());
localAction = 0.0;
mean_field::mapping::DomainMapperStateless::Workspace workspace(
f.mesh->Dimension()
);
mfem::Array<int> densityDofs;
mfem::Array<int> enthalpyDofs;
mfem::Array<int> displacementDofs;
mfem::Array<int> compactificationDofs;
mfem::Vector elementDensityInput;
mfem::Vector elementBaseEnthalpy;
mfem::Vector elementEnthalpyVariation;
mfem::Vector elementDisplacement;
mfem::Vector elementCompactification;
mfem::Vector elementAction;
mfem::Vector densityShape;
mfem::Vector enthalpyShape;
const int vacuumAttribute = domainMapper.GetVacuumElementAttribute();
for (int elementId = 0; elementId < f.mesh->GetNE(); ++elementId) {
mfem::ElementTransformation *transformation =
f.mesh->GetElementTransformation(elementId);
MFEM_VERIFY(
transformation != nullptr,
"The EOS closure kernel received a null "
"element transformation."
);
if (transformation->Attribute == vacuumAttribute) {
continue;
}
const mfem::FiniteElement &densityElement =
*f.densityFes->GetFE(elementId);
const mfem::FiniteElement &enthalpyElement =
*f.enthalpyFes->GetFE(elementId);
const mfem::FiniteElement &displacementElement =
*f.displacementFes->GetFE(elementId);
const mfem::FiniteElement &compactificationElement =
*f.compactificationFes->GetFE(elementId);
mfem::DofTransformation *densityDofTransformation =
f.densityFes->GetElementDofs(elementId, densityDofs);
mfem::DofTransformation *enthalpyDofTransformation =
f.enthalpyFes->GetElementDofs(elementId, enthalpyDofs);
mfem::DofTransformation *displacementDofTransformation =
f.displacementFes->GetElementVDofs(elementId, displacementDofs);
mfem::DofTransformation *compactificationDofTransformation =
f.compactificationFes->GetElementDofs(
elementId, compactificationDofs
);
if (densityInputTrue != nullptr) {
densityInputLocal.GetSubVector(
densityDofs, elementDensityInput
);
if (densityDofTransformation != nullptr) {
densityDofTransformation->InvTransformPrimal(
elementDensityInput
);
}
}
if (baseEnthalpyTrue != nullptr) {
baseEnthalpyLocal.GetSubVector(
enthalpyDofs, elementBaseEnthalpy
);
if (enthalpyDofTransformation != nullptr) {
enthalpyDofTransformation->InvTransformPrimal(
elementBaseEnthalpy
);
}
}
if (enthalpyVariationTrue != nullptr) {
enthalpyVariationLocal.GetSubVector(
enthalpyDofs, elementEnthalpyVariation
);
if (enthalpyDofTransformation != nullptr) {
enthalpyDofTransformation->InvTransformPrimal(
elementEnthalpyVariation
);
}
}
displacementLocal.GetSubVector(
displacementDofs, elementDisplacement
);
f.compactificationCoordinate->GetSubVector(
compactificationDofs, elementCompactification
);
if (displacementDofTransformation != nullptr) {
displacementDofTransformation->InvTransformPrimal(
elementDisplacement
);
}
if (compactificationDofTransformation != nullptr) {
compactificationDofTransformation->InvTransformPrimal(
elementCompactification
);
}
const mean_field::mapping::ElementDisplacementData
displacementData = mean_field::mapping::
ElementDisplacementDataFromElementVDofs(
displacementElement, elementDisplacement
);
const mean_field::mapping::ElementCompactificationData
compactificationData(
compactificationElement, elementCompactification
);
const mean_field::mapping::ElementMappingData mappingData{
.displacement = displacementData,
.compactification = compactificationData
};
densityShape.SetSize(densityElement.GetDof());
enthalpyShape.SetSize(enthalpyElement.GetDof());
elementAction.SetSize(densityElement.GetDof());
elementAction = 0.0;
const mfem::IntegrationRule &integrationRule = get_eos_rule(
f, barotrope, densityElement, enthalpyElement, *transformation
);
for (int quadratureIndex = 0;
quadratureIndex < integrationRule.GetNPoints();
++quadratureIndex) {
const mfem::IntegrationPoint &integrationPoint =
integrationRule.IntPoint(quadratureIndex);
transformation->SetIntPoint(&integrationPoint);
mean_field::mapping::VolumeMappingContext mappingContext;
const mean_field::mapping::MappingStatus mappingStatus =
domainMapper.EvaluateVolume(
mappingData, *transformation, integrationPoint,
workspace, mappingContext
);
MFEM_VERIFY(
mappingStatus == mean_field::mapping::MappingStatus::valid,
"Stateless mapping failed in the EOS "
"closure kernel. Element: "
<< elementId
<< ", attribute: " << transformation->Attribute
<< ", quadrature point: " << quadratureIndex
<< ", status: " << static_cast<int>(mappingStatus)
);
densityElement.CalcShape(integrationPoint, densityShape);
double integrand = 0.0;
if (closureAction == ClosureAction::density) {
integrand = elementDensityInput * densityShape;
} else {
enthalpyElement.CalcShape(integrationPoint, enthalpyShape);
const double baseEnthalpy =
elementBaseEnthalpy * enthalpyShape;
if (closureAction == ClosureAction::residual) {
const double density =
elementDensityInput * densityShape;
integrand =
density -
barotrope.density_from_enthalpy(baseEnthalpy);
} else {
const double enthalpyVariation =
elementEnthalpyVariation * enthalpyShape;
integrand = -barotrope.density_derivative_from_enthalpy(
baseEnthalpy
) *
enthalpyVariation;
}
}
const double weightedIntegrand =
mappingContext.quadrature.weight * integrand;
for (int densityDof = 0; densityDof < densityElement.GetDof();
++densityDof) {
elementAction(densityDof) +=
weightedIntegrand * densityShape(densityDof);
}
}
if (densityDofTransformation != nullptr) {
densityDofTransformation->TransformDual(elementAction);
}
localAction.AddElementVector(densityDofs, elementAction);
}
local_to_true(*f.densityFes, localAction, action);
}
} // namespace
namespace mean_field::operators::kernels {
void apply_barotropic_closure(
const fem::FEM &f,
const mapping::DomainMapperStateless &domainMapper,
const physics::PolytropicBarotrope &barotrope,
const mfem::Vector &densityTrue,
const mfem::Vector &enthalpyTrue,
const mfem::Vector &displacementTrue,
mfem::Vector &residual
) {
apply_closure_action(
f, domainMapper, barotrope, ClosureAction::residual, &densityTrue,
&enthalpyTrue, nullptr, displacementTrue, residual
);
}
void apply_barotropic_closure_density_action(
const fem::FEM &f,
const mapping::DomainMapperStateless &domainMapper,
const physics::PolytropicBarotrope &barotrope,
const mfem::Vector &densityVariationTrue,
const mfem::Vector &displacementTrue,
mfem::Vector &action
) {
apply_closure_action(
f, domainMapper, barotrope, ClosureAction::density,
&densityVariationTrue, nullptr, nullptr, displacementTrue, action
);
}
void apply_barotropic_closure_enthalpy_action(
const fem::FEM &f,
const mapping::DomainMapperStateless &domainMapper,
const physics::PolytropicBarotrope &barotrope,
const mfem::Vector &baseEnthalpyTrue,
const mfem::Vector &enthalpyVariationTrue,
const mfem::Vector &displacementTrue,
mfem::Vector &action
) {
apply_closure_action(
f, domainMapper, barotrope, ClosureAction::enthalpy, nullptr,
&baseEnthalpyTrue, &enthalpyVariationTrue, displacementTrue, action
);
}
void apply_barotropic_closure_displacement_action(
const fem::FEM &f,
const mapping::DomainMapperStateless &domainMapper,
const physics::PolytropicBarotrope &barotrope,
const mfem::Vector &baseDensityTrue,
const mfem::Vector &baseEnthalpyTrue,
const mfem::Vector &displacementTrue,
const mfem::Vector &displacementVariationTrue,
mfem::Vector &action
) {
MFEM_VERIFY(
f.mesh != nullptr, "The barotropic-closure displacement action "
"requires a mesh."
);
MFEM_VERIFY(
f.densityFes != nullptr,
"The barotropic-closure displacement action "
"requires the density finite-element space."
);
MFEM_VERIFY(
f.enthalpyFes != nullptr,
"The barotropic-closure displacement action "
"requires the enthalpy finite-element space."
);
MFEM_VERIFY(
f.displacementFes != nullptr,
"The barotropic-closure displacement action "
"requires the displacement finite-element space."
);
MFEM_VERIFY(
f.compactificationFes != nullptr,
"The barotropic-closure displacement action "
"requires the compactification finite-element space."
);
MFEM_VERIFY(
f.compactificationCoordinate != nullptr,
"The barotropic-closure displacement action "
"requires the compactification coordinate."
);
MFEM_VERIFY(
f.quadratureFactory != nullptr,
"The barotropic-closure displacement action "
"requires the quadrature-rule factory."
);
MFEM_VERIFY(
baseDensityTrue.Size() == f.densityFes->GetTrueVSize(),
"The base-density vector has the wrong size."
);
MFEM_VERIFY(
baseEnthalpyTrue.Size() == f.enthalpyFes->GetTrueVSize(),
"The base-enthalpy vector has the wrong size."
);
MFEM_VERIFY(
displacementTrue.Size() == f.displacementFes->GetTrueVSize(),
"The displacement vector has the wrong size."
);
MFEM_VERIFY(
displacementVariationTrue.Size() ==
f.displacementFes->GetTrueVSize(),
"The displacement-variation vector has the wrong size."
);
MFEM_VERIFY(
domainMapper.GetDimension() == f.mesh->Dimension(),
"The domain-mapper dimension does not match the "
"mesh dimension."
);
mfem::Vector baseDensityLocal;
mfem::Vector baseEnthalpyLocal;
mfem::Vector displacementLocal;
mfem::Vector displacementVariationLocal;
true_to_local(*f.densityFes, baseDensityTrue, baseDensityLocal);
true_to_local(*f.enthalpyFes, baseEnthalpyTrue, baseEnthalpyLocal);
true_to_local(*f.displacementFes, displacementTrue, displacementLocal);
true_to_local(
*f.displacementFes, displacementVariationTrue,
displacementVariationLocal
);
mfem::Vector localAction(f.densityFes->GetVSize());
localAction = 0.0;
mapping::DomainMapperStateless::Workspace workspace(
f.mesh->Dimension()
);
mfem::Array<int> densityDofs;
mfem::Array<int> enthalpyDofs;
mfem::Array<int> displacementDofs;
mfem::Array<int> compactificationDofs;
mfem::Vector elementBaseDensity;
mfem::Vector elementBaseEnthalpy;
mfem::Vector elementDisplacement;
mfem::Vector elementDisplacementVariation;
mfem::Vector elementCompactification;
mfem::Vector densityShape;
mfem::Vector enthalpyShape;
mfem::Vector elementAction;
mapping::VolumeMappingContext mappingContext;
mapping::VolumeMappingVariation mappingVariation;
const int vacuumAttribute = domainMapper.GetVacuumElementAttribute();
for (int elementId = 0; elementId < f.mesh->GetNE(); ++elementId) {
mfem::ElementTransformation *transformation =
f.mesh->GetElementTransformation(elementId);
MFEM_VERIFY(
transformation != nullptr,
"The barotropic-closure displacement action "
"received a null element transformation."
);
if (transformation->Attribute == vacuumAttribute) {
continue;
}
const mfem::FiniteElement &densityElement =
*f.densityFes->GetFE(elementId);
const mfem::FiniteElement &enthalpyElement =
*f.enthalpyFes->GetFE(elementId);
const mfem::FiniteElement &displacementElement =
*f.displacementFes->GetFE(elementId);
const mfem::FiniteElement &compactificationElement =
*f.compactificationFes->GetFE(elementId);
mfem::DofTransformation *densityDofTransformation =
f.densityFes->GetElementDofs(elementId, densityDofs);
mfem::DofTransformation *enthalpyDofTransformation =
f.enthalpyFes->GetElementDofs(elementId, enthalpyDofs);
mfem::DofTransformation *displacementDofTransformation =
f.displacementFes->GetElementVDofs(elementId, displacementDofs);
mfem::DofTransformation *compactificationDofTransformation =
f.compactificationFes->GetElementDofs(
elementId, compactificationDofs
);
baseDensityLocal.GetSubVector(densityDofs, elementBaseDensity);
baseEnthalpyLocal.GetSubVector(enthalpyDofs, elementBaseEnthalpy);
displacementLocal.GetSubVector(
displacementDofs, elementDisplacement
);
displacementVariationLocal.GetSubVector(
displacementDofs, elementDisplacementVariation
);
f.compactificationCoordinate->GetSubVector(
compactificationDofs, elementCompactification
);
if (densityDofTransformation != nullptr) {
densityDofTransformation->InvTransformPrimal(
elementBaseDensity
);
}
if (enthalpyDofTransformation != nullptr) {
enthalpyDofTransformation->InvTransformPrimal(
elementBaseEnthalpy
);
}
if (displacementDofTransformation != nullptr) {
displacementDofTransformation->InvTransformPrimal(
elementDisplacement
);
displacementDofTransformation->InvTransformPrimal(
elementDisplacementVariation
);
}
if (compactificationDofTransformation != nullptr) {
compactificationDofTransformation->InvTransformPrimal(
elementCompactification
);
}
const mapping::ElementDisplacementData displacementData =
mapping::ElementDisplacementDataFromElementVDofs(
displacementElement, elementDisplacement
);
const mapping::ElementDisplacementData displacementVariationData =
mapping::ElementDisplacementDataFromElementVDofs(
displacementElement, elementDisplacementVariation
);
const mapping::ElementCompactificationData compactificationData(
compactificationElement, elementCompactification
);
const mapping::ElementMappingData mappingData{
.displacement = displacementData,
.compactification = compactificationData
};
densityShape.SetSize(densityElement.GetDof());
enthalpyShape.SetSize(enthalpyElement.GetDof());
elementAction.SetSize(densityElement.GetDof());
elementAction = 0.0;
const mfem::IntegrationRule &integrationRule = get_eos_rule(
f, barotrope, densityElement, enthalpyElement, *transformation
);
for (int quadraturePoint = 0;
quadraturePoint < integrationRule.GetNPoints();
++quadraturePoint) {
const mfem::IntegrationPoint &integrationPoint =
integrationRule.IntPoint(quadraturePoint);
transformation->SetIntPoint(&integrationPoint);
const mapping::MappingStatus mappingStatus =
domainMapper.EvaluateVolume(
mappingData, *transformation, integrationPoint,
workspace, mappingContext
);
MFEM_VERIFY(
mappingStatus == mapping::MappingStatus::valid,
"The base mapping is invalid while applying "
"the barotropic-closure displacement action. "
"Element: "
<< elementId
<< ", attribute: " << transformation->Attribute
<< ", quadrature point: " << quadraturePoint
<< ", status: " << static_cast<int>(mappingStatus)
);
const mapping::MappingStatus variationStatus =
domainMapper.EvaluateVolumeVariation(
mappingData, displacementVariationData, *transformation,
integrationPoint, mappingContext, workspace,
mappingVariation
);
MFEM_VERIFY(
variationStatus == mapping::MappingStatus::valid,
"The mapping variation is invalid while "
"applying the barotropic-closure "
"displacement action. Element: "
<< elementId
<< ", attribute: " << transformation->Attribute
<< ", quadrature point: " << quadraturePoint
<< ", status: " << static_cast<int>(variationStatus)
);
densityElement.CalcShape(integrationPoint, densityShape);
enthalpyElement.CalcShape(integrationPoint, enthalpyShape);
const double densityValue = elementBaseDensity * densityShape;
const double enthalpyValue =
elementBaseEnthalpy * enthalpyShape;
const double closureValue =
densityValue -
barotrope.density_from_enthalpy(enthalpyValue);
const double geometryActionValue =
closureValue * mappingVariation.weight_variation;
MFEM_VERIFY(
std::isfinite(closureValue) &&
std::isfinite(geometryActionValue),
"The barotropic-closure displacement action "
"encountered a non-finite quadrature value."
);
elementAction.Add(geometryActionValue, densityShape);
}
if (densityDofTransformation != nullptr) {
densityDofTransformation->TransformDual(elementAction);
}
localAction.AddElementVector(densityDofs, elementAction);
}
local_to_true(*f.densityFes, localAction, action);
}
} // namespace mean_field::operators::kernels

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module;
#include <algorithm>
#include <array>
#include <cmath>
#include <mfem.hpp>
#include <optional>
module mean_field;
import :operators.kernels.hydrostatic_equilibrium;
namespace {
void true_to_local(
const mfem::ParFiniteElementSpace &finiteElementSpace,
const mfem::Vector &trueVector,
mfem::Vector &localVector
) {
MFEM_VERIFY(
trueVector.Size() == finiteElementSpace.GetTrueVSize(),
"True vector has the wrong size."
);
localVector.SetSize(finiteElementSpace.GetVSize());
const mfem::Operator *prolongation =
finiteElementSpace.GetProlongationMatrix();
if (prolongation != nullptr) {
prolongation->Mult(trueVector, localVector);
} else {
localVector = trueVector;
}
}
void local_to_true(
const mfem::ParFiniteElementSpace &finiteElementSpace,
const mfem::Vector &localVector,
mfem::Vector &trueVector
) {
MFEM_VERIFY(
localVector.Size() == finiteElementSpace.GetVSize(),
"Local vector has the wrong size."
);
trueVector.SetSize(finiteElementSpace.GetTrueVSize());
trueVector = 0.0;
const mfem::Operator *prolongation =
finiteElementSpace.GetProlongationMatrix();
if (prolongation != nullptr) {
prolongation->MultTranspose(localVector, trueVector);
} else {
trueVector = localVector;
}
}
void validate_fem(
const mean_field::fem::FEM &f,
const mean_field::mapping::DomainMapperStateless &domainMapper
) {
MFEM_VERIFY(
f.mesh != nullptr, "The hydrostatic kernel requires a mesh."
);
MFEM_VERIFY(
f.enthalpyFes != nullptr, "The hydrostatic kernel requires the "
"enthalpy finite-element space."
);
MFEM_VERIFY(
f.gravityPotentialFes != nullptr,
"The hydrostatic kernel requires the "
"gravity-potential finite-element space."
);
MFEM_VERIFY(
f.displacementFes != nullptr, "The hydrostatic kernel requires the "
"displacement finite-element space."
);
MFEM_VERIFY(
f.compactificationFes != nullptr,
"The hydrostatic kernel requires the "
"compactification finite-element space."
);
MFEM_VERIFY(
f.compactificationCoordinate != nullptr,
"The hydrostatic kernel requires the "
"compactification coordinate."
);
MFEM_VERIFY(
f.quadratureFactory != nullptr,
"The hydrostatic kernel requires the "
"quadrature-rule factory."
);
MFEM_VERIFY(
f.mesh->Dimension() == 3,
"The rigid-rotation hydrostatic kernel "
"currently requires a three-dimensional mesh."
);
MFEM_VERIFY(
domainMapper.GetDimension() == f.mesh->Dimension(),
"The domain-mapper dimension does not match "
"the mesh dimension."
);
}
const mfem::IntegrationRule &get_hydrostatic_rule(
const mean_field::fem::FEM &f,
const mfem::FiniteElement &enthalpyElement,
const mfem::FiniteElement &potentialElement,
const mfem::ElementTransformation &transformation
) {
using EnthalpyField =
mean_field::field::Field<mean_field::field::Enthalpy>;
MFEM_VERIFY(
enthalpyElement.GetOrder() ==
mean_field::field::Enthalpy::Scalar::familyOrder,
"The hydrostatic test element does not match "
"the registered enthalpy field."
);
MFEM_VERIFY(
potentialElement.GetOrder() ==
mean_field::field::Gravity::Potential::familyOrder,
"The hydrostatic potential element does not "
"match the registered gravity-potential field."
);
const auto enthalpyQuery = EnthalpyField::make_query<
mean_field::field::Enthalpy::Form::EquilibriumEnthalpy>(
mean_field::quadrature::QuadratureRole::discretization,
transformation.OrderW(), {}, mean_field::utils::DOMAINS::STELLAR,
mean_field::quadrature::MappingKind::general
);
const auto gravityQuery = EnthalpyField::make_query<
mean_field::field::Enthalpy::Form::EquilibriumGravity>(
mean_field::quadrature::QuadratureRole::discretization,
transformation.OrderW(), {}, mean_field::utils::DOMAINS::STELLAR,
mean_field::quadrature::MappingKind::general
);
const auto rotationQuery = EnthalpyField::make_query<
mean_field::field::Enthalpy::Form::EquilibriumRotation>(
mean_field::quadrature::QuadratureRole::discretization,
transformation.OrderW(), std::array<int, 1>{2},
mean_field::utils::DOMAINS::STELLAR,
mean_field::quadrature::MappingKind::general
);
const auto constantQuery = EnthalpyField::make_query<
mean_field::field::Enthalpy::Form::EquilibriumConstant>(
mean_field::quadrature::QuadratureRole::discretization,
transformation.OrderW(), {}, mean_field::utils::DOMAINS::STELLAR,
mean_field::quadrature::MappingKind::general
);
int integrationOrder = 0;
const auto update_order = [&f, &transformation, &integrationOrder](
const mean_field::quadrature::Query &query
) {
const auto rule = f.quadratureFactory->get(
query, transformation.GetGeometryType()
);
MFEM_VERIFY(
rule.integration_rule != nullptr,
"The quadrature policy did not return "
"a hydrostatic-equilibrium rule."
);
integrationOrder =
std::max(integrationOrder, rule.resolution.order);
};
update_order(enthalpyQuery);
update_order(gravityQuery);
update_order(rotationQuery);
update_order(constantQuery);
return mfem::IntRules.Get(
transformation.GetGeometryType(), integrationOrder
);
}
struct HydrostaticAssemblyRequest {
const mean_field::physics::RigidRotation *rotation{nullptr};
const mfem::Vector *baseEnthalpyTrue{nullptr};
const mfem::Vector *basePotentialTrue{nullptr};
const mfem::Vector *enthalpyVariationTrue{nullptr};
const mfem::Vector *potentialVariationTrue{nullptr};
const mfem::Vector *displacementVariationTrue{nullptr};
double bernoulliConstant{0.0};
double constantVariation{0.0};
bool buildResidual{false};
};
void assemble_hydrostatic_form(
const mean_field::fem::FEM &f,
const mean_field::mapping::DomainMapperStateless &domainMapper,
const mfem::Vector &displacementTrue,
const HydrostaticAssemblyRequest &request,
mfem::Vector &result
) {
validate_fem(f, domainMapper);
MFEM_VERIFY(
displacementTrue.Size() == f.displacementFes->GetTrueVSize(),
"The hydrostatic displacement vector has "
"the wrong size."
);
MFEM_VERIFY(
std::isfinite(request.bernoulliConstant),
"The Bernoulli constant is non-finite."
);
MFEM_VERIFY(
std::isfinite(request.constantVariation),
"The Bernoulli-constant variation is non-finite."
);
const bool requiresBaseState =
request.buildResidual ||
request.displacementVariationTrue != nullptr;
if (requiresBaseState) {
MFEM_VERIFY(
request.rotation != nullptr,
"The hydrostatic residual or geometry "
"action requires the rotation model."
);
MFEM_VERIFY(
request.baseEnthalpyTrue != nullptr,
"The hydrostatic residual or geometry "
"action requires the base enthalpy."
);
MFEM_VERIFY(
request.basePotentialTrue != nullptr,
"The hydrostatic residual or geometry "
"action requires the base potential."
);
}
if (request.baseEnthalpyTrue != nullptr) {
MFEM_VERIFY(
request.baseEnthalpyTrue->Size() ==
f.enthalpyFes->GetTrueVSize(),
"The base enthalpy vector has the wrong size."
);
}
if (request.basePotentialTrue != nullptr) {
MFEM_VERIFY(
request.basePotentialTrue->Size() ==
f.gravityPotentialFes->GetTrueVSize(),
"The base potential vector has the wrong size."
);
}
if (request.enthalpyVariationTrue != nullptr) {
MFEM_VERIFY(
request.enthalpyVariationTrue->Size() ==
f.enthalpyFes->GetTrueVSize(),
"The enthalpy variation has the wrong size."
);
}
if (request.potentialVariationTrue != nullptr) {
MFEM_VERIFY(
request.potentialVariationTrue->Size() ==
f.gravityPotentialFes->GetTrueVSize(),
"The potential variation has the wrong size."
);
}
if (request.displacementVariationTrue != nullptr) {
MFEM_VERIFY(
request.displacementVariationTrue->Size() ==
f.displacementFes->GetTrueVSize(),
"The displacement variation has the wrong size."
);
}
mfem::Vector displacementLocal;
true_to_local(*f.displacementFes, displacementTrue, displacementLocal);
mfem::Vector baseEnthalpyLocal;
mfem::Vector basePotentialLocal;
mfem::Vector enthalpyVariationLocal;
mfem::Vector potentialVariationLocal;
mfem::Vector displacementVariationLocal;
if (request.baseEnthalpyTrue != nullptr) {
true_to_local(
*f.enthalpyFes, *request.baseEnthalpyTrue, baseEnthalpyLocal
);
}
if (request.basePotentialTrue != nullptr) {
true_to_local(
*f.gravityPotentialFes, *request.basePotentialTrue,
basePotentialLocal
);
}
if (request.enthalpyVariationTrue != nullptr) {
true_to_local(
*f.enthalpyFes, *request.enthalpyVariationTrue,
enthalpyVariationLocal
);
}
if (request.potentialVariationTrue != nullptr) {
true_to_local(
*f.gravityPotentialFes, *request.potentialVariationTrue,
potentialVariationLocal
);
}
if (request.displacementVariationTrue != nullptr) {
true_to_local(
*f.displacementFes, *request.displacementVariationTrue,
displacementVariationLocal
);
}
mfem::Vector localResult(f.enthalpyFes->GetVSize());
localResult = 0.0;
mean_field::mapping::DomainMapperStateless::Workspace workspace(
f.mesh->Dimension()
);
mfem::Array<int> enthalpyDofs;
mfem::Array<int> potentialDofs;
mfem::Array<int> displacementDofs;
mfem::Array<int> compactificationDofs;
mfem::Vector elementBaseEnthalpy;
mfem::Vector elementBasePotential;
mfem::Vector elementEnthalpyVariation;
mfem::Vector elementPotentialVariation;
mfem::Vector elementDisplacement;
mfem::Vector elementDisplacementVariation;
mfem::Vector elementCompactification;
mfem::Vector elementResult;
mfem::Vector enthalpyShape;
mfem::Vector potentialShape;
const int vacuumAttribute = domainMapper.GetVacuumElementAttribute();
for (int elementId = 0; elementId < f.mesh->GetNE(); ++elementId) {
mfem::ElementTransformation *transformation =
f.mesh->GetElementTransformation(elementId);
MFEM_VERIFY(
transformation != nullptr,
"The hydrostatic kernel received a null "
"element transformation."
);
if (transformation->Attribute == vacuumAttribute) {
continue;
}
const mfem::FiniteElement &enthalpyElement =
*f.enthalpyFes->GetFE(elementId);
const mfem::FiniteElement &potentialElement =
*f.gravityPotentialFes->GetFE(elementId);
const mfem::FiniteElement &displacementElement =
*f.displacementFes->GetFE(elementId);
const mfem::FiniteElement &compactificationElement =
*f.compactificationFes->GetFE(elementId);
mfem::DofTransformation *enthalpyDofTransformation =
f.enthalpyFes->GetElementDofs(elementId, enthalpyDofs);
mfem::DofTransformation *potentialDofTransformation =
f.gravityPotentialFes->GetElementDofs(elementId, potentialDofs);
mfem::DofTransformation *displacementDofTransformation =
f.displacementFes->GetElementVDofs(elementId, displacementDofs);
mfem::DofTransformation *compactificationDofTransformation =
f.compactificationFes->GetElementDofs(
elementId, compactificationDofs
);
displacementLocal.GetSubVector(
displacementDofs, elementDisplacement
);
f.compactificationCoordinate->GetSubVector(
compactificationDofs, elementCompactification
);
if (request.baseEnthalpyTrue != nullptr) {
baseEnthalpyLocal.GetSubVector(
enthalpyDofs, elementBaseEnthalpy
);
}
if (request.basePotentialTrue != nullptr) {
basePotentialLocal.GetSubVector(
potentialDofs, elementBasePotential
);
}
if (request.enthalpyVariationTrue != nullptr) {
enthalpyVariationLocal.GetSubVector(
enthalpyDofs, elementEnthalpyVariation
);
}
if (request.potentialVariationTrue != nullptr) {
potentialVariationLocal.GetSubVector(
potentialDofs, elementPotentialVariation
);
}
if (request.displacementVariationTrue != nullptr) {
displacementVariationLocal.GetSubVector(
displacementDofs, elementDisplacementVariation
);
}
if (enthalpyDofTransformation != nullptr) {
if (request.baseEnthalpyTrue != nullptr) {
enthalpyDofTransformation->InvTransformPrimal(
elementBaseEnthalpy
);
}
if (request.enthalpyVariationTrue != nullptr) {
enthalpyDofTransformation->InvTransformPrimal(
elementEnthalpyVariation
);
}
}
if (potentialDofTransformation != nullptr) {
if (request.basePotentialTrue != nullptr) {
potentialDofTransformation->InvTransformPrimal(
elementBasePotential
);
}
if (request.potentialVariationTrue != nullptr) {
potentialDofTransformation->InvTransformPrimal(
elementPotentialVariation
);
}
}
if (displacementDofTransformation != nullptr) {
displacementDofTransformation->InvTransformPrimal(
elementDisplacement
);
if (request.displacementVariationTrue != nullptr) {
displacementDofTransformation->InvTransformPrimal(
elementDisplacementVariation
);
}
}
if (compactificationDofTransformation != nullptr) {
compactificationDofTransformation->InvTransformPrimal(
elementCompactification
);
}
const mean_field::mapping::ElementDisplacementData
displacementData = mean_field::mapping::
ElementDisplacementDataFromElementVDofs(
displacementElement, elementDisplacement
);
const mean_field::mapping::ElementCompactificationData
compactificationData(
compactificationElement, elementCompactification
);
const mean_field::mapping::ElementMappingData mappingData{
.displacement = displacementData,
.compactification = compactificationData
};
std::optional<mean_field::mapping::ElementDisplacementData>
displacementVariationData;
if (request.displacementVariationTrue != nullptr) {
displacementVariationData.emplace(
mean_field::mapping::
ElementDisplacementDataFromElementVDofs(
displacementElement, elementDisplacementVariation
)
);
}
elementResult.SetSize(enthalpyElement.GetDof());
elementResult = 0.0;
enthalpyShape.SetSize(enthalpyElement.GetDof());
potentialShape.SetSize(potentialElement.GetDof());
const mfem::IntegrationRule &integrationRule = get_hydrostatic_rule(
f, enthalpyElement, potentialElement, *transformation
);
for (int quadraturePoint = 0;
quadraturePoint < integrationRule.GetNPoints();
++quadraturePoint) {
const mfem::IntegrationPoint &integrationPoint =
integrationRule.IntPoint(quadraturePoint);
transformation->SetIntPoint(&integrationPoint);
mean_field::mapping::VolumeMappingContext mappingContext;
const mean_field::mapping::MappingStatus mappingStatus =
domainMapper.EvaluateVolume(
mappingData, *transformation, integrationPoint,
workspace, mappingContext
);
MFEM_VERIFY(
mappingStatus == mean_field::mapping::MappingStatus::valid,
"The base mapping is invalid in the "
"hydrostatic kernel. Element: "
<< elementId
<< ", quadrature point: " << quadraturePoint
<< ", status: " << static_cast<int>(mappingStatus)
);
enthalpyElement.CalcShape(integrationPoint, enthalpyShape);
potentialElement.CalcShape(integrationPoint, potentialShape);
double baseIntegrand = 0.0;
if (requiresBaseState) {
const double enthalpyValue =
elementBaseEnthalpy * enthalpyShape;
const double potentialValue =
elementBasePotential * potentialShape;
const double rotationPotential =
request.rotation->potential(
mappingContext.mapping.physical_position
);
baseIntegrand = enthalpyValue + potentialValue -
rotationPotential -
request.bernoulliConstant;
}
if (request.buildResidual) {
elementResult.Add(
mappingContext.quadrature.weight * baseIntegrand,
enthalpyShape
);
continue;
}
double materialVariation = -request.constantVariation;
if (request.enthalpyVariationTrue != nullptr) {
materialVariation +=
elementEnthalpyVariation * enthalpyShape;
}
if (request.potentialVariationTrue != nullptr) {
materialVariation +=
elementPotentialVariation * potentialShape;
}
double weightedVariation =
mappingContext.quadrature.weight * materialVariation;
if (request.displacementVariationTrue != nullptr) {
mean_field::mapping::VolumeMappingVariation
mappingVariation;
const mean_field::mapping::MappingStatus variationStatus =
domainMapper.EvaluateVolumeVariation(
mappingData, *displacementVariationData,
*transformation, integrationPoint, mappingContext,
workspace, mappingVariation
);
MFEM_VERIFY(
variationStatus ==
mean_field::mapping::MappingStatus::valid,
"The mapping variation is invalid "
"in the hydrostatic kernel."
);
const double rotationVariation =
request.rotation->potential_directional_derivative(
mappingContext.mapping.physical_position,
mappingVariation.mapping.physical_position_variation
);
weightedVariation +=
baseIntegrand * mappingVariation.weight_variation -
rotationVariation * mappingContext.quadrature.weight;
}
elementResult.Add(weightedVariation, enthalpyShape);
}
if (enthalpyDofTransformation != nullptr) {
enthalpyDofTransformation->TransformDual(elementResult);
}
localResult.AddElementVector(enthalpyDofs, elementResult);
}
local_to_true(*f.enthalpyFes, localResult, result);
}
} // namespace
namespace mean_field::operators::kernels {
void apply_hydrostatic_equilibrium(
const fem::FEM &f,
const mapping::DomainMapperStateless &domainMapper,
const physics::RigidRotation &rotation,
const mfem::Vector &enthalpyTrue,
const mfem::Vector &potentialTrue,
const mfem::Vector &displacementTrue,
const double bernoulliConstant,
mfem::Vector &residual
) {
HydrostaticAssemblyRequest request;
request.rotation = &rotation;
request.baseEnthalpyTrue = &enthalpyTrue;
request.basePotentialTrue = &potentialTrue;
request.bernoulliConstant = bernoulliConstant;
request.buildResidual = true;
assemble_hydrostatic_form(
f, domainMapper, displacementTrue, request, residual
);
}
void apply_hydrostatic_equilibrium_enthalpy_action(
const fem::FEM &f,
const mapping::DomainMapperStateless &domainMapper,
const mfem::Vector &enthalpyVariationTrue,
const mfem::Vector &displacementTrue,
mfem::Vector &action
) {
HydrostaticAssemblyRequest request;
request.enthalpyVariationTrue = &enthalpyVariationTrue;
assemble_hydrostatic_form(
f, domainMapper, displacementTrue, request, action
);
}
void apply_hydrostatic_equilibrium_potential_action(
const fem::FEM &f,
const mapping::DomainMapperStateless &domainMapper,
const mfem::Vector &potentialVariationTrue,
const mfem::Vector &displacementTrue,
mfem::Vector &action
) {
HydrostaticAssemblyRequest request;
request.potentialVariationTrue = &potentialVariationTrue;
assemble_hydrostatic_form(
f, domainMapper, displacementTrue, request, action
);
}
void apply_hydrostatic_equilibrium_constant_action(
const fem::FEM &f,
const mapping::DomainMapperStateless &domainMapper,
const double constantVariation,
const mfem::Vector &displacementTrue,
mfem::Vector &action
) {
HydrostaticAssemblyRequest request;
request.constantVariation = constantVariation;
assemble_hydrostatic_form(
f, domainMapper, displacementTrue, request, action
);
}
void apply_hydrostatic_equilibrium_displacement_action(
const fem::FEM &f,
const mapping::DomainMapperStateless &domainMapper,
const physics::RigidRotation &rotation,
const mfem::Vector &baseEnthalpyTrue,
const mfem::Vector &basePotentialTrue,
const mfem::Vector &baseDisplacementTrue,
const double baseBernoulliConstant,
const mfem::Vector &displacementVariationTrue,
mfem::Vector &action
) {
HydrostaticAssemblyRequest request;
request.rotation = &rotation;
request.baseEnthalpyTrue = &baseEnthalpyTrue;
request.basePotentialTrue = &basePotentialTrue;
request.displacementVariationTrue = &displacementVariationTrue;
request.bernoulliConstant = baseBernoulliConstant;
assemble_hydrostatic_form(
f, domainMapper, baseDisplacementTrue, request, action
);
}
void apply_hydrostatic_equilibrium_action(
const fem::FEM &f,
const mapping::DomainMapperStateless &domainMapper,
const physics::RigidRotation &rotation,
const mfem::Vector &baseEnthalpyTrue,
const mfem::Vector &basePotentialTrue,
const mfem::Vector &baseDisplacementTrue,
const double baseBernoulliConstant,
const mfem::Vector &enthalpyVariationTrue,
const mfem::Vector &potentialVariationTrue,
const double constantVariation,
const mfem::Vector &displacementVariationTrue,
mfem::Vector &action
) {
HydrostaticAssemblyRequest request;
request.rotation = &rotation;
request.baseEnthalpyTrue = &baseEnthalpyTrue;
request.basePotentialTrue = &basePotentialTrue;
request.enthalpyVariationTrue = &enthalpyVariationTrue;
request.potentialVariationTrue = &potentialVariationTrue;
request.displacementVariationTrue = &displacementVariationTrue;
request.bernoulliConstant = baseBernoulliConstant;
request.constantVariation = constantVariation;
assemble_hydrostatic_form(
f, domainMapper, baseDisplacementTrue, request, action
);
}
} // namespace mean_field::operators::kernels

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@@ -0,0 +1,464 @@
module;
#include <array>
#include <cmath>
#include <limits>
#include <mfem.hpp>
module mean_field;
import :operators.kernels.pressure_force;
namespace {
void true_to_local(
const mfem::ParFiniteElementSpace &finiteElementSpace,
const mfem::Vector &trueVector,
mfem::Vector &localVector
) {
MFEM_VERIFY(
trueVector.Size() == finiteElementSpace.GetTrueVSize(),
"The pressure-force true vector has the wrong size."
);
localVector.SetSize(finiteElementSpace.GetVSize());
const mfem::Operator *prolongation =
finiteElementSpace.GetProlongationMatrix();
if (prolongation != nullptr) {
prolongation->Mult(trueVector, localVector);
} else {
localVector = trueVector;
}
}
void local_to_true(
const mfem::ParFiniteElementSpace &finiteElementSpace,
const mfem::Vector &localVector,
mfem::Vector &trueVector
) {
MFEM_VERIFY(
localVector.Size() == finiteElementSpace.GetVSize(),
"The pressure-force local vector has the wrong size."
);
trueVector.SetSize(finiteElementSpace.GetTrueVSize());
trueVector = 0.0;
const mfem::Operator *prolongation =
finiteElementSpace.GetProlongationMatrix();
if (prolongation != nullptr) {
prolongation->MultTranspose(localVector, trueVector);
} else {
trueVector = localVector;
}
}
[[nodiscard]] int vector_dof_index(
const mfem::Ordering::Type ordering,
const int scalarDof,
const int component,
const int scalarDofCount,
const int dimension
) {
if (ordering == mfem::Ordering::byNODES) {
return scalarDof + component * scalarDofCount;
}
if (ordering == mfem::Ordering::byVDIM) {
return component + scalarDof * dimension;
}
MFEM_ABORT("The displacement space uses an unsupported ordering.");
return -1;
}
[[nodiscard]] int get_pressure_extra_order(
const mean_field::physics::PolytropicBarotrope &barotrope
) {
/*
* Pressure has the enthalpy dependence
*
* P(h) proportional to h^(n + 1).
*
* The registered enthalpy operand already contributes one factor
* of the enthalpy polynomial order. The remaining dynamic
* contribution is therefore n times that order.
*/
const double extraOrder =
barotrope.polytropic_index() *
static_cast<double>(
mean_field::field::Enthalpy::Scalar::familyOrder
);
MFEM_VERIFY(
std::isfinite(extraOrder) && extraOrder >= 0.0 &&
extraOrder <=
static_cast<double>(std::numeric_limits<int>::max()),
"The pressure EOS effective polynomial order is invalid."
);
return static_cast<int>(std::ceil(extraOrder));
}
[[nodiscard]] const mfem::IntegrationRule &get_pressure_force_rule(
const mean_field::fem::FEM &f,
const mean_field::physics::PolytropicBarotrope &barotrope,
const mfem::FiniteElement &enthalpyElement,
const mfem::FiniteElement &displacementElement,
const mfem::ElementTransformation &transformation
) {
using EnthalpyField =
mean_field::field::Field<mean_field::field::Enthalpy>;
MFEM_VERIFY(
enthalpyElement.GetOrder() ==
mean_field::field::Enthalpy::Scalar::familyOrder,
"The pressure-force enthalpy element does not match the "
"registered enthalpy field."
);
MFEM_VERIFY(
displacementElement.GetOrder() ==
mean_field::field::Displacement::Vector::familyOrder,
"The pressure-force test element does not match the "
"registered displacement field."
);
const mean_field::quadrature::Query query = EnthalpyField::make_query<
mean_field::field::Enthalpy::Form::PressureForce>(
mean_field::quadrature::QuadratureRole::discretization,
transformation.OrderW(),
std::array<int, 1>{get_pressure_extra_order(barotrope)},
mean_field::utils::DOMAINS::STELLAR,
mean_field::quadrature::MappingKind::general
);
const mean_field::quadrature::MfemRule rule =
f.quadratureFactory->get(query, transformation.GetGeometryType());
MFEM_VERIFY(
rule.integration_rule != nullptr,
"The quadrature policy did not return a pressure-force "
"integration rule."
);
return *rule.integration_rule;
}
void validate_inputs(
const mean_field::fem::FEM &f,
const mean_field::mapping::DomainMapperStateless &domainMapper,
const mfem::Vector &enthalpyTrue,
const mfem::Vector &displacementTrue
) {
MFEM_VERIFY(
f.mesh != nullptr, "The pressure-force kernel requires a mesh."
);
MFEM_VERIFY(
f.enthalpyFes != nullptr,
"The pressure-force kernel requires the enthalpy "
"finite-element space."
);
MFEM_VERIFY(
f.displacementFes != nullptr,
"The pressure-force kernel requires the displacement "
"finite-element space."
);
MFEM_VERIFY(
f.compactificationFes != nullptr,
"The pressure-force kernel requires the compactification "
"finite-element space."
);
MFEM_VERIFY(
f.compactificationCoordinate != nullptr,
"The pressure-force kernel requires the compactification "
"coordinate."
);
MFEM_VERIFY(
f.quadratureFactory != nullptr,
"The pressure-force kernel requires the quadrature "
"rule factory."
);
MFEM_VERIFY(
enthalpyTrue.Size() == f.enthalpyFes->GetTrueVSize(),
"The pressure-force enthalpy vector has the wrong size."
);
MFEM_VERIFY(
displacementTrue.Size() == f.displacementFes->GetTrueVSize(),
"The pressure-force displacement vector has the wrong size."
);
MFEM_VERIFY(
domainMapper.GetDimension() == f.mesh->Dimension(),
"The pressure-force domain-mapper dimension does not match "
"the mesh dimension."
);
MFEM_VERIFY(
f.displacementFes->GetVDim() == f.mesh->Dimension(),
"The displacement vector dimension does not match the "
"mesh dimension."
);
MFEM_VERIFY(
f.displacementFes->GetOrdering() == mfem::Ordering::byNODES,
"The pressure-force kernel requires the registered byNODES "
"displacement ordering."
);
}
} // namespace
namespace mean_field::operators::kernels {
void apply_pressure_force_residual(
const fem::FEM &f,
const mapping::DomainMapperStateless &domainMapper,
const physics::PolytropicBarotrope &barotrope,
const mfem::Vector &enthalpyTrue,
const mfem::Vector &displacementTrue,
mfem::Vector &residualTrue
) {
validate_inputs(f, domainMapper, enthalpyTrue, displacementTrue);
mfem::Vector enthalpyLocal;
mfem::Vector displacementLocal;
true_to_local(*f.enthalpyFes, enthalpyTrue, enthalpyLocal);
true_to_local(*f.displacementFes, displacementTrue, displacementLocal);
mfem::Vector localResidual(f.displacementFes->GetVSize());
localResidual = 0.0;
mapping::DomainMapperStateless::Workspace workspace(
f.mesh->Dimension()
);
mfem::Array<int> enthalpyDofs;
mfem::Array<int> displacementDofs;
mfem::Array<int> compactificationDofs;
mfem::Vector elementEnthalpy;
mfem::Vector elementDisplacement;
mfem::Vector elementCompactification;
mfem::Vector elementResidual;
mfem::Vector enthalpyShape;
mfem::DenseMatrix displacementDShapeReference;
mfem::DenseMatrix displacementDShapePhysical;
mapping::VolumeMappingContext mappingContext;
const int dimension = f.mesh->Dimension();
const int vacuumAttribute = domainMapper.GetVacuumElementAttribute();
const mfem::Ordering::Type displacementOrdering =
f.displacementFes->GetOrdering();
for (int elementId = 0; elementId < f.mesh->GetNE(); ++elementId) {
mfem::ElementTransformation *transformation =
f.mesh->GetElementTransformation(elementId);
MFEM_VERIFY(
transformation != nullptr,
"The pressure-force kernel received a null element "
"transformation."
);
/*
* Skip vacuum before constructing or evaluating any mapping
* data for the element.
*/
if (transformation->Attribute == vacuumAttribute) {
continue;
}
const mfem::FiniteElement &enthalpyElement =
*f.enthalpyFes->GetFE(elementId);
const mfem::FiniteElement &displacementElement =
*f.displacementFes->GetFE(elementId);
const mfem::FiniteElement &compactificationElement =
*f.compactificationFes->GetFE(elementId);
mfem::DofTransformation *enthalpyDofTransformation =
f.enthalpyFes->GetElementDofs(elementId, enthalpyDofs);
mfem::DofTransformation *displacementDofTransformation =
f.displacementFes->GetElementVDofs(elementId, displacementDofs);
mfem::DofTransformation *compactificationDofTransformation =
f.compactificationFes->GetElementDofs(
elementId, compactificationDofs
);
enthalpyLocal.GetSubVector(enthalpyDofs, elementEnthalpy);
displacementLocal.GetSubVector(
displacementDofs, elementDisplacement
);
f.compactificationCoordinate->GetSubVector(
compactificationDofs, elementCompactification
);
if (enthalpyDofTransformation != nullptr) {
enthalpyDofTransformation->InvTransformPrimal(elementEnthalpy);
}
if (displacementDofTransformation != nullptr) {
displacementDofTransformation->InvTransformPrimal(
elementDisplacement
);
}
if (compactificationDofTransformation != nullptr) {
compactificationDofTransformation->InvTransformPrimal(
elementCompactification
);
}
const mapping::ElementDisplacementData displacementData =
mapping::ElementDisplacementDataFromElementVDofs(
displacementElement, elementDisplacement
);
const mapping::ElementCompactificationData compactificationData(
compactificationElement, elementCompactification
);
const mapping::ElementMappingData mappingData{
.displacement = displacementData,
.compactification = compactificationData
};
const int scalarDisplacementDofCount = displacementElement.GetDof();
MFEM_VERIFY(
displacementDofs.Size() ==
scalarDisplacementDofCount * dimension,
"The pressure-force element displacement vector has "
"the wrong size."
);
enthalpyShape.SetSize(enthalpyElement.GetDof());
displacementDShapeReference.SetSize(
scalarDisplacementDofCount, dimension
);
displacementDShapePhysical.SetSize(
scalarDisplacementDofCount, dimension
);
elementResidual.SetSize(displacementDofs.Size());
elementResidual = 0.0;
const mfem::IntegrationRule &integrationRule =
get_pressure_force_rule(
f, barotrope, enthalpyElement, displacementElement,
*transformation
);
for (int quadratureIndex = 0;
quadratureIndex < integrationRule.GetNPoints();
++quadratureIndex) {
const mfem::IntegrationPoint &integrationPoint =
integrationRule.IntPoint(quadratureIndex);
transformation->SetIntPoint(&integrationPoint);
const mapping::MappingStatus mappingStatus =
domainMapper.EvaluateVolume(
mappingData, *transformation, integrationPoint,
workspace, mappingContext
);
MFEM_VERIFY(
mappingStatus == mapping::MappingStatus::valid,
"Stateless mapping failed in the pressure-force "
"kernel. Element: "
<< elementId
<< ", attribute: " << transformation->Attribute
<< ", quadrature point: " << quadratureIndex
<< ", status: " << static_cast<int>(mappingStatus)
);
enthalpyElement.CalcShape(integrationPoint, enthalpyShape);
const double enthalpyValue = elementEnthalpy * enthalpyShape;
const double pressureValue =
barotrope.pressure_from_enthalpy(enthalpyValue);
displacementElement.CalcDShape(
integrationPoint, displacementDShapeReference
);
/*
* Row i of DShape is grad_reference(N_i). Multiplication
* by the complete inverse element Jacobian gives
*
* grad_physical(N_i)
* = grad_reference(N_i) J^{-1}.
*/
mfem::Mult(
displacementDShapeReference,
mappingContext.quadrature.J_inv, displacementDShapePhysical
);
const double weightedPressure =
pressureValue * mappingContext.quadrature.weight;
MFEM_VERIFY(
std::isfinite(pressureValue) &&
std::isfinite(weightedPressure),
"The pressure-force kernel encountered a non-finite "
"quadrature value."
);
/*
* For the vector basis N_i e_c,
*
* div(N_i e_c) = partial_c N_i.
*
* Therefore
*
* R_(i,c)
* = -integral P partial_c N_i dV.
*/
for (int scalarDof = 0; scalarDof < scalarDisplacementDofCount;
++scalarDof) {
for (int component = 0; component < dimension;
++component) {
const int vectorDof = vector_dof_index(
displacementOrdering, scalarDof, component,
scalarDisplacementDofCount, dimension
);
elementResidual(vectorDof) -=
weightedPressure *
displacementDShapePhysical(scalarDof, component);
}
}
}
if (displacementDofTransformation != nullptr) {
displacementDofTransformation->TransformDual(elementResidual);
}
localResidual.AddElementVector(displacementDofs, elementResidual);
}
local_to_true(*f.displacementFes, localResidual, residualTrue);
}
} // namespace mean_field::operators::kernels

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module;
#include <array>
#include <cmath>
#include <cstdint>
#include <limits>
#include <mfem.hpp>
module mean_field;
import :operators.prepared_barotropic_closure;
namespace {
int get_density_size(const mean_field::fem::FEM &f) {
MFEM_VERIFY(
f.densityFes != nullptr,
"PreparedBarotropicClosureOperator requires the "
"density finite-element space."
);
return f.densityFes->GetTrueVSize();
}
int get_enthalpy_size(const mean_field::fem::FEM &f) {
MFEM_VERIFY(
f.enthalpyFes != nullptr,
"PreparedBarotropicClosureOperator requires the "
"enthalpy finite-element space."
);
return f.enthalpyFes->GetTrueVSize();
}
void validate_finite_vector(
const mfem::Vector &vector,
const char *message
) {
for (int i = 0; i < vector.Size(); ++i) {
MFEM_VERIFY(std::isfinite(vector(i)), message);
}
}
void true_to_local(
const mfem::ParFiniteElementSpace &finiteElementSpace,
const mfem::Vector &trueVector,
mfem::Vector &localVector
) {
MFEM_VERIFY(
trueVector.Size() == finiteElementSpace.GetTrueVSize(),
"True vector has the wrong size."
);
localVector.SetSize(finiteElementSpace.GetVSize());
const mfem::Operator *prolongation =
finiteElementSpace.GetProlongationMatrix();
if (prolongation != nullptr) {
prolongation->Mult(trueVector, localVector);
} else {
localVector = trueVector;
}
}
void local_to_true(
const mfem::ParFiniteElementSpace &finiteElementSpace,
const mfem::Vector &localVector,
mfem::Vector &trueVector
) {
MFEM_VERIFY(
localVector.Size() == finiteElementSpace.GetVSize(),
"Local vector has the wrong size."
);
trueVector.SetSize(finiteElementSpace.GetTrueVSize());
trueVector = 0.0;
const mfem::Operator *prolongation =
finiteElementSpace.GetProlongationMatrix();
if (prolongation != nullptr) {
prolongation->MultTranspose(localVector, trueVector);
} else {
trueVector = localVector;
}
}
int get_eos_extra_order(
const mean_field::physics::PolytropicBarotrope &barotrope
) {
const double extraOrder =
(barotrope.polytropic_index() - 1.0) *
static_cast<double>(
mean_field::field::Enthalpy::Scalar::familyOrder
);
MFEM_VERIFY(
std::isfinite(extraOrder) && extraOrder >= 0.0 &&
extraOrder <=
static_cast<double>(std::numeric_limits<int>::max()),
"The EOS effective polynomial order is invalid."
);
return static_cast<int>(std::ceil(extraOrder));
}
const mfem::IntegrationRule &get_eos_rule(
const mean_field::fem::FEM &f,
const mean_field::physics::PolytropicBarotrope &barotrope,
const mfem::FiniteElement &densityElement,
const mfem::FiniteElement &enthalpyElement,
const mfem::ElementTransformation &transformation
) {
using EnthalpyField =
mean_field::field::Field<mean_field::field::Enthalpy>;
MFEM_VERIFY(
densityElement.GetOrder() ==
mean_field::field::Density::Scalar::familyOrder,
"The prepared EOS test element does not match "
"the registered density field."
);
MFEM_VERIFY(
enthalpyElement.GetOrder() ==
mean_field::field::Enthalpy::Scalar::familyOrder,
"The prepared EOS trial element does not match "
"the registered enthalpy field."
);
const mean_field::quadrature::Query query = EnthalpyField::make_query<
mean_field::field::Enthalpy::Form::EosClosureSource>(
mean_field::quadrature::QuadratureRole::discretization,
transformation.OrderW(),
std::array<int, 1>{get_eos_extra_order(barotrope)},
mean_field::utils::DOMAINS::STELLAR,
mean_field::quadrature::MappingKind::general
);
const auto resolution =
f.quadratureFactory->get(query, transformation.GetGeometryType());
MFEM_VERIFY(
resolution.integration_rule != nullptr,
"The quadrature policy did not return a prepared "
"EOS-closure integration rule."
);
return *resolution.integration_rule;
}
} // namespace
namespace mean_field::operators {
PreparedBarotropicClosureOperator::PreparedBarotropicClosureOperator(
const fem::FEM &f,
const mapping::DomainMapperStateless &domainMapper,
const physics::PolytropicBarotrope &barotrope
)
: mfem::Operator(
f.densityFes->GetTrueVSize(),
f.densityFes->GetTrueVSize() + f.enthalpyFes->GetTrueVSize() +
f.displacementFes->GetTrueVSize()
),
m_fem(f),
m_domainMapper(domainMapper),
m_barotrope(barotrope),
m_densitySize(f.densityFes->GetTrueVSize()),
m_enthalpySize(f.enthalpyFes->GetTrueVSize()) {
MFEM_VERIFY(
m_fem.densityFes != nullptr,
"PreparedBarotropicClosureOperator requires "
"a density finite-element space."
);
MFEM_VERIFY(
m_fem.enthalpyFes != nullptr,
"PreparedBarotropicClosureOperator requires "
"an enthalpy finite-element space."
);
MFEM_VERIFY(
m_fem.displacementFes != nullptr,
"PreparedBarotropicClosureOperator requires "
"a displacement finite-element space."
);
}
void PreparedBarotropicClosureOperator::Prepare(
const mfem::Vector &baseDensityTrue,
const mfem::Vector &baseEnthalpyTrue,
const mfem::Vector &displacementTrue
) {
MFEM_VERIFY(
baseDensityTrue.Size() == m_densitySize,
"PreparedBarotropicClosureOperator received a "
"base-density vector with the wrong size."
);
MFEM_VERIFY(
baseEnthalpyTrue.Size() == m_enthalpySize,
"PreparedBarotropicClosureOperator received a "
"base-enthalpy vector with the wrong size."
);
MFEM_VERIFY(
displacementTrue.Size() == m_fem.displacementFes->GetTrueVSize(),
"PreparedBarotropicClosureOperator received a "
"displacement vector with the wrong size."
);
MFEM_VERIFY(
baseDensityTrue.Size() == m_fem.densityFes->GetTrueVSize(),
"The base density true vector has the wrong size."
);
MFEM_VERIFY(
baseEnthalpyTrue.Size() == m_fem.enthalpyFes->GetTrueVSize(),
"The base enthalpy true vector has the wrong size."
);
MFEM_VERIFY(
displacementTrue.Size() == m_fem.displacementFes->GetTrueVSize(),
"The base displacement true vector has the wrong size."
);
validate_finite_vector(
baseDensityTrue, "PreparedBarotropicClosureOperator received a "
"non-finite base-density value."
);
validate_finite_vector(
baseEnthalpyTrue, "PreparedBarotropicClosureOperator received a "
"non-finite base-enthalpy value."
);
validate_finite_vector(
displacementTrue, "PreparedBarotropicClosureOperator received a "
"non-finite displacement value."
);
m_isPrepared = false;
m_elements.clear();
m_elements.reserve(m_fem.mesh->GetNE());
mfem::Vector baseDensityLocal;
mfem::Vector baseEnthalpyLocal;
mfem::Vector displacementLocal;
true_to_local(*m_fem.densityFes, baseDensityTrue, baseDensityLocal);
true_to_local(*m_fem.enthalpyFes, baseEnthalpyTrue, baseEnthalpyLocal);
true_to_local(
*m_fem.displacementFes, displacementTrue, displacementLocal
);
mapping::DomainMapperStateless::Workspace workspace(
m_fem.mesh->Dimension()
);
mfem::Array<int> displacementDofs;
mfem::Array<int> compactificationDofs;
mfem::Vector elementBaseDensity;
mfem::Vector elementBaseEnthalpy;
mfem::Vector elementDisplacement;
mfem::Vector elementCompactification;
mfem::Vector densityShape;
mfem::Vector enthalpyShape;
const int vacuumAttribute = m_domainMapper.GetVacuumElementAttribute();
for (int elementId = 0; elementId < m_fem.mesh->GetNE(); ++elementId) {
mfem::ElementTransformation *transformation =
m_fem.mesh->GetElementTransformation(elementId);
MFEM_VERIFY(
transformation != nullptr,
"PreparedBarotropicClosureOperator received "
"a null element transformation."
);
if (transformation->Attribute == vacuumAttribute) {
continue;
}
m_elements.emplace_back();
ElementPAData &data = m_elements.back();
data.densityDofTransformation =
m_fem.densityFes->GetElementDofs(elementId, data.densityDofs);
data.enthalpyDofTransformation =
m_fem.enthalpyFes->GetElementDofs(elementId, data.enthalpyDofs);
mfem::DofTransformation *displacementDofTransformation =
m_fem.displacementFes->GetElementVDofs(
elementId, displacementDofs
);
mfem::DofTransformation *compactificationDofTransformation =
m_fem.compactificationFes->GetElementDofs(
elementId, compactificationDofs
);
baseDensityLocal.GetSubVector(data.densityDofs, elementBaseDensity);
baseEnthalpyLocal.GetSubVector(
data.enthalpyDofs, elementBaseEnthalpy
);
displacementLocal.GetSubVector(
displacementDofs, elementDisplacement
);
m_fem.compactificationCoordinate->GetSubVector(
compactificationDofs, elementCompactification
);
if (data.densityDofTransformation != nullptr) {
data.densityDofTransformation->InvTransformPrimal(
elementBaseDensity
);
}
if (data.enthalpyDofTransformation != nullptr) {
data.enthalpyDofTransformation->InvTransformPrimal(
elementBaseEnthalpy
);
}
if (displacementDofTransformation != nullptr) {
displacementDofTransformation->InvTransformPrimal(
elementDisplacement
);
}
if (compactificationDofTransformation != nullptr) {
compactificationDofTransformation->InvTransformPrimal(
elementCompactification
);
}
const mfem::FiniteElement &densityElement =
*m_fem.densityFes->GetFE(elementId);
const mfem::FiniteElement &enthalpyElement =
*m_fem.enthalpyFes->GetFE(elementId);
const mfem::FiniteElement &displacementElement =
*m_fem.displacementFes->GetFE(elementId);
const mfem::FiniteElement &compactificationElement =
*m_fem.compactificationFes->GetFE(elementId);
const mapping::ElementDisplacementData displacementData =
mapping::ElementDisplacementDataFromElementVDofs(
displacementElement, elementDisplacement
);
const mapping::ElementCompactificationData compactificationData(
compactificationElement, elementCompactification
);
const mapping::ElementMappingData mappingData{
.displacement = displacementData,
.compactification = compactificationData
};
const mfem::IntegrationRule &integrationRule = get_eos_rule(
m_fem, m_barotrope, densityElement, enthalpyElement,
*transformation
);
const int quadraturePointCount = integrationRule.GetNPoints();
const int densityDofCount = densityElement.GetDof();
const int enthalpyDofCount = enthalpyElement.GetDof();
data.densityBasis.SetSize(quadraturePointCount, densityDofCount);
data.enthalpyBasis.SetSize(quadraturePointCount, enthalpyDofCount);
data.weightedResidual.SetSize(quadraturePointCount);
data.quadratureWeights.SetSize(quadraturePointCount);
data.weightedEnthalpyDerivative.SetSize(quadraturePointCount);
densityShape.SetSize(densityDofCount);
enthalpyShape.SetSize(enthalpyDofCount);
for (int quadraturePoint = 0;
quadraturePoint < quadraturePointCount; ++quadraturePoint) {
const mfem::IntegrationPoint &integrationPoint =
integrationRule.IntPoint(quadraturePoint);
transformation->SetIntPoint(&integrationPoint);
mapping::VolumeMappingContext mappingContext;
const mapping::MappingStatus mappingStatus =
m_domainMapper.EvaluateVolume(
mappingData, *transformation, integrationPoint,
workspace, mappingContext
);
MFEM_VERIFY(
mappingStatus == mapping::MappingStatus::valid,
"Stateless mapping failed while preparing "
"the barotropic closure operator. Element: "
<< elementId
<< ", attribute: " << transformation->Attribute
<< ", quadrature point: " << quadraturePoint
<< ", status: " << static_cast<int>(mappingStatus)
);
densityElement.CalcShape(integrationPoint, densityShape);
enthalpyElement.CalcShape(integrationPoint, enthalpyShape);
for (int densityDof = 0; densityDof < densityDofCount;
++densityDof) {
data.densityBasis(quadraturePoint, densityDof) =
densityShape(densityDof);
}
for (int enthalpyDof = 0; enthalpyDof < enthalpyDofCount;
++enthalpyDof) {
data.enthalpyBasis(quadraturePoint, enthalpyDof) =
enthalpyShape(enthalpyDof);
}
const double density = elementBaseDensity * densityShape;
const double enthalpy = elementBaseEnthalpy * enthalpyShape;
const double quadratureWeight =
mappingContext.quadrature.weight;
const double eosDensity =
m_barotrope.density_from_enthalpy(enthalpy);
const double enthalpyDerivative =
m_barotrope.density_derivative_from_enthalpy(enthalpy);
MFEM_VERIFY(
std::isfinite(quadratureWeight) && quadratureWeight > 0.0 &&
std::isfinite(eosDensity) &&
std::isfinite(enthalpyDerivative),
"PreparedBarotropicClosureOperator "
"encountered invalid quadrature data."
);
data.quadratureWeights(quadraturePoint) = quadratureWeight;
data.weightedResidual(quadraturePoint) =
quadratureWeight * (density - eosDensity);
data.weightedEnthalpyDerivative(quadraturePoint) =
quadratureWeight * enthalpyDerivative;
}
}
MFEM_VERIFY(
!m_elements.empty(), "PreparedBarotropicClosureOperator found no "
"stellar elements."
);
m_baseDensityTrue = baseDensityTrue;
m_baseEnthalpyTrue = baseEnthalpyTrue;
m_baseDisplacementTrue = displacementTrue;
m_isPrepared = true;
++m_preparationCount;
}
void PreparedBarotropicClosureOperator::BuildResidual(
mfem::Vector &residual
) const {
MFEM_VERIFY(
m_isPrepared, "PreparedBarotropicClosureOperator must be "
"prepared before BuildResidual is called."
);
mfem::Vector localResidual(m_fem.densityFes->GetVSize());
localResidual = 0.0;
mfem::Vector elementResidual;
for (const ElementPAData &data : m_elements) {
elementResidual.SetSize(data.densityDofs.Size());
data.densityBasis.MultTranspose(
data.weightedResidual, elementResidual
);
if (data.densityDofTransformation != nullptr) {
data.densityDofTransformation->TransformDual(elementResidual);
}
localResidual.AddElementVector(data.densityDofs, elementResidual);
}
local_to_true(*m_fem.densityFes, localResidual, residual);
}
void PreparedBarotropicClosureOperator::Mult(
const mfem::Vector &densityVariationTrue,
const mfem::Vector &enthalpyVariationTrue,
const mfem::Vector &displacementVariationTrue,
mfem::Vector &action
) const {
VerifyPrepared();
MFEM_VERIFY(
densityVariationTrue.Size() == m_densitySize,
"The density-variation true vector has "
"the wrong size."
);
MFEM_VERIFY(
enthalpyVariationTrue.Size() == m_enthalpySize,
"The enthalpy-variation true vector has "
"the wrong size."
);
MFEM_VERIFY(
displacementVariationTrue.Size() ==
m_fem.displacementFes->GetTrueVSize(),
"The displacement-variation true vector has "
"the wrong size."
);
Mult(densityVariationTrue, enthalpyVariationTrue, action);
mfem::Vector displacementAction;
kernels::apply_barotropic_closure_displacement_action(
m_fem, m_domainMapper, m_barotrope, m_baseDensityTrue,
m_baseEnthalpyTrue, m_baseDisplacementTrue,
displacementVariationTrue, displacementAction
);
MFEM_VERIFY(
displacementAction.Size() == m_densitySize,
"The barotropic-closure displacement action "
"returned a vector with the wrong size."
);
action += displacementAction;
}
void PreparedBarotropicClosureOperator::Mult(
const mfem::Vector &combinedVariation,
mfem::Vector &action
) const {
VerifyPrepared();
const int displacementSize = m_fem.displacementFes->GetTrueVSize();
const int combinedSize =
m_densitySize + m_enthalpySize + displacementSize;
MFEM_VERIFY(
combinedVariation.Size() == combinedSize,
"The combined barotropic-closure variation "
"vector has the wrong size. Expected "
<< combinedSize << " entries but received "
<< combinedVariation.Size() << "."
);
mfem::real_t *combinedData =
const_cast<mfem::real_t *>(combinedVariation.HostRead());
const mfem::Vector densityVariationTrue(combinedData, m_densitySize);
const mfem::Vector enthalpyVariationTrue(
combinedData + m_densitySize, m_enthalpySize
);
const mfem::Vector displacementVariationTrue(
combinedData + m_densitySize + m_enthalpySize, displacementSize
);
Mult(
densityVariationTrue, enthalpyVariationTrue,
displacementVariationTrue, action
);
}
void PreparedBarotropicClosureOperator::Mult(
const mfem::Vector &densityVariationTrue,
const mfem::Vector &enthalpyVariationTrue,
mfem::Vector &action
) const {
MFEM_VERIFY(
m_isPrepared, "PreparedBarotropicClosureOperator must be "
"prepared before Mult is called."
);
MFEM_VERIFY(
densityVariationTrue.Size() == m_densitySize,
"PreparedBarotropicClosureOperator received a "
"density variation with the wrong size."
);
MFEM_VERIFY(
enthalpyVariationTrue.Size() == m_enthalpySize,
"PreparedBarotropicClosureOperator received an "
"enthalpy variation with the wrong size."
);
mfem::Vector densityVariationLocal;
mfem::Vector enthalpyVariationLocal;
true_to_local(
*m_fem.densityFes, densityVariationTrue, densityVariationLocal
);
true_to_local(
*m_fem.enthalpyFes, enthalpyVariationTrue, enthalpyVariationLocal
);
mfem::Vector localAction(m_fem.densityFes->GetVSize());
localAction = 0.0;
mfem::Vector elementDensityVariation;
mfem::Vector elementEnthalpyVariation;
mfem::Vector quadratureDensityVariation;
mfem::Vector quadratureEnthalpyVariation;
mfem::Vector quadratureAction;
mfem::Vector elementAction;
for (const ElementPAData &data : m_elements) {
densityVariationLocal.GetSubVector(
data.densityDofs, elementDensityVariation
);
enthalpyVariationLocal.GetSubVector(
data.enthalpyDofs, elementEnthalpyVariation
);
if (data.densityDofTransformation != nullptr) {
data.densityDofTransformation->InvTransformPrimal(
elementDensityVariation
);
}
if (data.enthalpyDofTransformation != nullptr) {
data.enthalpyDofTransformation->InvTransformPrimal(
elementEnthalpyVariation
);
}
quadratureDensityVariation.SetSize(data.quadratureWeights.Size());
quadratureEnthalpyVariation.SetSize(data.quadratureWeights.Size());
quadratureAction.SetSize(data.quadratureWeights.Size());
data.densityBasis.Mult(
elementDensityVariation, quadratureDensityVariation
);
data.enthalpyBasis.Mult(
elementEnthalpyVariation, quadratureEnthalpyVariation
);
for (int quadraturePoint = 0;
quadraturePoint < quadratureAction.Size(); ++quadraturePoint) {
quadratureAction(quadraturePoint) =
data.quadratureWeights(quadraturePoint) *
quadratureDensityVariation(quadraturePoint) -
data.weightedEnthalpyDerivative(quadraturePoint) *
quadratureEnthalpyVariation(quadraturePoint);
}
elementAction.SetSize(data.densityDofs.Size());
data.densityBasis.MultTranspose(quadratureAction, elementAction);
if (data.densityDofTransformation != nullptr) {
data.densityDofTransformation->TransformDual(elementAction);
}
localAction.AddElementVector(data.densityDofs, elementAction);
}
local_to_true(*m_fem.densityFes, localAction, action);
}
bool PreparedBarotropicClosureOperator::IsPrepared() const noexcept {
return m_isPrepared;
}
std::uint64_t
PreparedBarotropicClosureOperator::GetPreparationCount() const noexcept {
return m_preparationCount;
}
int PreparedBarotropicClosureOperator::GetDensitySize() const noexcept {
return m_densitySize;
}
int PreparedBarotropicClosureOperator::GetEnthalpySize() const noexcept {
return m_enthalpySize;
}
void PreparedBarotropicClosureOperator::VerifyPrepared() const {
MFEM_VERIFY(
m_isPrepared, "PreparedBarotropicClosureOperator must be "
"prepared before this operation is called."
);
}
} // namespace mean_field::operators

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module;
#include <cmath>
#include <cstdint>
#include <memory>
#include <mfem.hpp>
#include <numbers>
module mean_field;
import :operators.prepared_gravity_source;
namespace {
int get_operator_height(const mean_field::fem::FEM &f) {
MFEM_VERIFY(
f.gravityPotentialFes != nullptr,
"PreparedMappedGravitySourceOperator requires the "
"gravity-potential "
"finite-element space."
);
return f.gravityPotentialFes->GetTrueVSize();
}
int get_operator_width(const mean_field::fem::FEM &f) {
MFEM_VERIFY(
f.densityFes != nullptr,
"PreparedMappedGravitySourceOperator requires the density "
"finite-element space."
);
return f.densityFes->GetTrueVSize();
}
void true_to_local(
const mfem::ParFiniteElementSpace &finite_element_space,
const mfem::Vector &true_vector,
mfem::Vector &local_vector
) {
local_vector.SetSize(finite_element_space.GetVSize());
const mfem::Operator *prolongation =
finite_element_space.GetProlongationMatrix();
if (prolongation != nullptr) {
prolongation->Mult(true_vector, local_vector);
} else {
local_vector = true_vector;
}
}
void local_to_true(
const mfem::ParFiniteElementSpace &finite_element_space,
const mfem::Vector &local_vector,
mfem::Vector &true_vector
) {
MFEM_VERIFY(
local_vector.Size() == finite_element_space.GetVSize(),
"Local vector has the wrong size."
);
true_vector.SetSize(finite_element_space.GetTrueVSize());
true_vector = 0.0;
const mfem::Operator *prolongation =
finite_element_space.GetProlongationMatrix();
if (prolongation != nullptr) {
prolongation->MultTranspose(local_vector, true_vector);
} else {
true_vector = local_vector;
}
}
const mfem::IntegrationRule &get_source_rule(
const mean_field::fem::FEM &f,
const mfem::FiniteElement &density_element,
const mfem::FiniteElement &potential_element,
const mfem::ElementTransformation &transformation
) {
using GravityField =
mean_field::field::Field<mean_field::field::Gravity>;
MFEM_VERIFY(
density_element.GetOrder() ==
mean_field::field::Density::Scalar::familyOrder,
"The prepared source trial element does not match the registered "
"density field."
);
MFEM_VERIFY(
potential_element.GetOrder() ==
mean_field::field::Gravity::Potential::familyOrder,
"The prepared source test element does not match the registered "
"gravity potential."
);
const mean_field::quadrature::Query query = GravityField::make_query<
mean_field::field::Gravity::Form::SourceProjection>(
mean_field::quadrature::QuadratureRole::discretization,
transformation.OrderW(), {}, mean_field::utils::DOMAINS::STELLAR,
mean_field::quadrature::MappingKind::general
);
return *f.quadratureFactory
->get(query, transformation.GetGeometryType())
.integration_rule;
}
class FrozenMappedGravitySourceCoefficient final
: public mfem::Coefficient {
public:
FrozenMappedGravitySourceCoefficient(
const mean_field::fem::FEM &f,
const mean_field::mapping::DomainMapperStateless &domain_mapper,
const mfem::Vector &displacement_true
)
: m_fem(f),
m_domain_mapper(domain_mapper),
m_workspace(domain_mapper.GetDimension()) {
true_to_local(
*m_fem.displacementFes, displacement_true, m_displacement_local
);
}
double Eval(
mfem::ElementTransformation &transformation,
const mfem::IntegrationPoint &integration_point
) override {
transformation.SetIntPoint(&integration_point);
const int element_id = transformation.ElementNo;
MFEM_VERIFY(
element_id >= 0 && element_id < m_fem.mesh->GetNE(),
"Mapped gravity source coefficient received an invalid element "
"ID."
);
if (transformation.Attribute ==
m_domain_mapper.GetVacuumElementAttribute()) {
return 0.0;
}
LoadElement(element_id);
const mean_field::mapping::ElementMappingData mapping_data{
.displacement = *m_displacement_data,
.compactification = *m_compactification_data
};
mean_field::mapping::VolumeMappingContext mapping_context;
const mean_field::mapping::MappingStatus status =
m_domain_mapper.EvaluateVolume(
mapping_data, transformation, integration_point,
m_workspace, mapping_context
);
if (status != mean_field::mapping::MappingStatus::valid) {
const mfem::FiniteElement &displacement_element =
*m_fem.displacementFes->GetFE(element_id);
const mfem::FiniteElement &compactification_element =
*m_fem.compactificationFes->GetFE(element_id);
mfem::Vector displacement_shape(displacement_element.GetDof());
mfem::Vector compactification_shape(
compactification_element.GetDof()
);
mfem::Vector reference_position(m_domain_mapper.GetDimension());
mfem::Vector displacement_value(m_domain_mapper.GetDimension());
displacement_element.CalcShape(
integration_point, displacement_shape
);
compactification_element.CalcShape(
integration_point, compactification_shape
);
transformation.Transform(integration_point, reference_position);
m_displacement_data->GetDofMatrix().MultTranspose(
displacement_shape, displacement_value
);
const double compactification_coordinate =
m_compactification_data->GetDofs() * compactification_shape;
MFEM_ABORT(
"Stateless domain mapping failed while preparing the "
"gravity "
"source operator."
<< "\nMapping status = " << static_cast<int>(status)
<< "\nElement ID = " << element_id
<< "\nElement attribute = " << transformation.Attribute
<< "\nIntegration-point index = " << integration_point.index
<< "\nIntegration point = <" << integration_point.x << ", "
<< integration_point.y << ", " << integration_point.z << ">"
<< "\nReference position = <" << reference_position(0)
<< ", " << reference_position(1) << ", "
<< reference_position(2) << ">"
<< "\nReference radius = " << reference_position.Norml2()
<< "\nDisplacement value = <" << displacement_value(0)
<< ", " << displacement_value(1) << ", "
<< displacement_value(2) << ">"
<< "\nDisplacement magnitude = "
<< displacement_value.Norml2()
<< "\nCompactification coordinate = "
<< compactification_coordinate
<< "\nDisplacement ordering = "
<< static_cast<int>(m_fem.displacementFes->GetOrdering())
);
}
const double mapping_determinant =
mapping_context.mapping.mapping_determinant;
MFEM_VERIFY(
std::isfinite(mapping_determinant) && mapping_determinant > 0.0,
"Prepared gravity source operator encountered a non-positive "
"or "
"non-finite mapping determinant."
);
return 4.0 * std::numbers::pi * mean_field::utils::G *
mapping_determinant;
}
private:
void LoadElement(const int element_id) {
if (element_id == m_cached_element_id) {
return;
}
const mfem::FiniteElement &displacement_element =
*m_fem.displacementFes->GetFE(element_id);
const mfem::FiniteElement &compactification_element =
*m_fem.compactificationFes->GetFE(element_id);
mfem::DofTransformation *displacement_dof_transformation =
m_fem.displacementFes->GetElementVDofs(
element_id, m_displacement_dofs
);
mfem::DofTransformation *compactification_dof_transformation =
m_fem.compactificationFes->GetElementDofs(
element_id, m_compactification_dofs
);
m_displacement_local.GetSubVector(
m_displacement_dofs, m_element_displacement
);
m_fem.compactificationCoordinate->GetSubVector(
m_compactification_dofs, m_element_compactification
);
if (displacement_dof_transformation != nullptr) {
displacement_dof_transformation->InvTransformPrimal(
m_element_displacement
);
}
if (compactification_dof_transformation != nullptr) {
compactification_dof_transformation->InvTransformPrimal(
m_element_compactification
);
}
m_displacement_data = std::make_unique<
mean_field::mapping::ElementDisplacementData>(
mean_field::mapping::ElementDisplacementDataFromElementVDofs(
displacement_element, m_element_displacement
)
);
m_compactification_data = std::make_unique<
mean_field::mapping::ElementCompactificationData>(
compactification_element, m_element_compactification
);
m_cached_element_id = element_id;
}
const mean_field::fem::FEM &m_fem;
const mean_field::mapping::DomainMapperStateless &m_domain_mapper;
mfem::Vector m_displacement_local;
mfem::Array<int> m_displacement_dofs;
mfem::Array<int> m_compactification_dofs;
mfem::Vector m_element_displacement;
mfem::Vector m_element_compactification;
std::unique_ptr<mean_field::mapping::ElementDisplacementData>
m_displacement_data;
std::unique_ptr<mean_field::mapping::ElementCompactificationData>
m_compactification_data;
mean_field::mapping::DomainMapperStateless::Workspace m_workspace;
int m_cached_element_id{-1};
};
} // namespace
namespace mean_field::operators {
PreparedMappedGravitySourceOperator::PreparedMappedGravitySourceOperator(
const fem::FEM &f,
const mapping::DomainMapperStateless &domain_mapper
)
: Operator(
get_operator_height(f),
get_operator_width(f)
),
m_fem(f),
m_domain_mapper(domain_mapper) {
MFEM_VERIFY(
f.mesh != nullptr,
"PreparedMappedGravitySourceOperator requires a mesh."
);
MFEM_VERIFY(
f.densityFes != nullptr,
"PreparedMappedGravitySourceOperator requires the density "
"finite-element space."
);
MFEM_VERIFY(
f.gravityPotentialFes != nullptr,
"PreparedMappedGravitySourceOperator requires the "
"gravity-potential "
"finite-element space."
);
MFEM_VERIFY(
f.displacementFes != nullptr,
"PreparedMappedGravitySourceOperator requires "
"the displacement finite-element space."
);
MFEM_VERIFY(
f.compactificationFes != nullptr,
"PreparedMappedGravitySourceOperator requires the compactification "
"finite-element space."
);
MFEM_VERIFY(
f.compactificationCoordinate != nullptr,
"PreparedMappedGravitySourceOperator requires the compactification "
"coordinate."
);
MFEM_VERIFY(
f.quadratureFactory != nullptr,
"PreparedMappedGravitySourceOperator "
"requires the quadrature-rule factory."
);
MFEM_VERIFY(
domain_mapper.GetDimension() == f.mesh->Dimension(),
"The stateless domain-mapper dimension does not match the mesh "
"dimension."
);
utils::populate_element_mask(
f.mesh.get(), utils::DOMAINS::STELLAR, m_stellar_marker
);
}
void PreparedMappedGravitySourceOperator::Prepare(
const mfem::Vector &displacement_true
) {
MFEM_VERIFY(
displacement_true.Size() == m_fem.displacementFes->GetTrueVSize(),
"PreparedMappedGravitySourceOperator received a displacement "
"vector "
"with the wrong size."
);
for (int i = 0; i < displacement_true.Size(); ++i) {
MFEM_VERIFY(
std::isfinite(displacement_true(i)),
"PreparedMappedGravitySourceOperator received a non-finite "
"displacement value."
);
}
m_is_prepared = false;
m_elements.clear();
m_elements.reserve(m_fem.mesh->GetNE());
FrozenMappedGravitySourceCoefficient source_coefficient(
m_fem, m_domain_mapper, displacement_true
);
for (int element_id = 0; element_id < m_fem.mesh->GetNE();
++element_id) {
const int attribute = m_fem.mesh->GetAttribute(element_id);
if (attribute <= 0 || attribute > m_stellar_marker.Size() ||
m_stellar_marker[attribute - 1] == 0) {
continue;
}
m_elements.emplace_back();
ElementPAData &data = m_elements.back();
data.element_id = element_id;
data.density_dof_transformation =
m_fem.densityFes->GetElementDofs(element_id, data.density_dofs);
data.potential_dof_transformation =
m_fem.gravityPotentialFes->GetElementDofs(
element_id, data.potential_dofs
);
const mfem::FiniteElement &density_element =
*m_fem.densityFes->GetFE(element_id);
const mfem::FiniteElement &potential_element =
*m_fem.gravityPotentialFes->GetFE(element_id);
mfem::ElementTransformation &transformation =
*m_fem.mesh->GetElementTransformation(element_id);
const mfem::IntegrationRule &integration_rule = get_source_rule(
m_fem, density_element, potential_element, transformation
);
const int quadrature_point_count = integration_rule.GetNPoints();
const int density_dof_count = density_element.GetDof();
const int potential_dof_count = potential_element.GetDof();
data.density_basis.SetSize(
quadrature_point_count, density_dof_count
);
data.potential_basis.SetSize(
quadrature_point_count, potential_dof_count
);
data.quadrature_data.SetSize(quadrature_point_count);
mfem::Vector density_shape(density_dof_count);
mfem::Vector potential_shape(potential_dof_count);
for (int quadrature_point = 0;
quadrature_point < quadrature_point_count;
++quadrature_point) {
const mfem::IntegrationPoint &integration_point =
integration_rule.IntPoint(quadrature_point);
transformation.SetIntPoint(&integration_point);
// CalcPhysShape matches the scalar mixed-mass discretization,
// including the finite-element map type.
density_element.CalcPhysShape(transformation, density_shape);
potential_element.CalcPhysShape(
transformation, potential_shape
);
for (int i = 0; i < density_dof_count; ++i) {
data.density_basis(quadrature_point, i) = density_shape(i);
}
for (int i = 0; i < potential_dof_count; ++i) {
data.potential_basis(quadrature_point, i) =
potential_shape(i);
}
const double coefficient_value =
source_coefficient.Eval(transformation, integration_point);
transformation.SetIntPoint(&integration_point);
const double quadrature_value = integration_point.weight *
transformation.Weight() *
coefficient_value;
MFEM_VERIFY(
std::isfinite(quadrature_value) && quadrature_value > 0.0,
"Prepared gravity source operator encountered invalid "
"quadrature data on element "
<< element_id << ", quadrature point "
<< quadrature_point << "."
);
data.quadrature_data(quadrature_point) = quadrature_value;
}
}
MFEM_VERIFY(
!m_elements.empty(),
"PreparedMappedGravitySourceOperator found no stellar elements."
);
m_is_prepared = true;
++m_preparation_count;
}
void PreparedMappedGravitySourceOperator::Mult(
const mfem::Vector &density_true,
mfem::Vector &action
) const {
MFEM_VERIFY(
m_is_prepared,
"PreparedMappedGravitySourceOperator must be prepared before "
"Mult is called."
);
MFEM_VERIFY(
density_true.Size() == Width(),
"PreparedMappedGravitySourceOperator received a density vector "
"with the wrong size."
);
mfem::Vector density_local;
true_to_local(*m_fem.densityFes, density_true, density_local);
mfem::Vector local_action(m_fem.gravityPotentialFes->GetVSize());
local_action = 0.0;
mfem::Vector element_density;
mfem::Vector quadrature_density;
mfem::Vector element_action;
for (const ElementPAData &data : m_elements) {
density_local.GetSubVector(data.density_dofs, element_density);
if (data.density_dof_transformation != nullptr) {
data.density_dof_transformation->InvTransformPrimal(
element_density
);
}
quadrature_density.SetSize(data.quadrature_data.Size());
// B_density * x_e
data.density_basis.Mult(element_density, quadrature_density);
// D * B_density * x_e
for (int q = 0; q < quadrature_density.Size(); ++q) {
quadrature_density(q) *= data.quadrature_data(q);
}
element_action.SetSize(data.potential_dofs.Size());
// B_potential^T * D * B_density * x_e
data.potential_basis.MultTranspose(
quadrature_density, element_action
);
if (data.potential_dof_transformation != nullptr) {
data.potential_dof_transformation->TransformDual(
element_action
);
}
local_action.AddElementVector(data.potential_dofs, element_action);
}
local_to_true(*m_fem.gravityPotentialFes, local_action, action);
}
void PreparedMappedGravitySourceOperator::MultTranspose(
const mfem::Vector &potential_true,
mfem::Vector &action
) const {
MFEM_VERIFY(
m_is_prepared,
"PreparedMappedGravitySourceOperator must be prepared before "
"MultTranspose is called."
);
MFEM_VERIFY(
potential_true.Size() == Height(),
"PreparedMappedGravitySourceOperator received a potential vector "
"with the wrong size."
);
mfem::Vector potential_local;
true_to_local(
*m_fem.gravityPotentialFes, potential_true, potential_local
);
mfem::Vector local_action(m_fem.densityFes->GetVSize());
local_action = 0.0;
mfem::Vector element_potential;
mfem::Vector quadrature_potential;
mfem::Vector element_action;
for (const ElementPAData &data : m_elements) {
potential_local.GetSubVector(
data.potential_dofs, element_potential
);
if (data.potential_dof_transformation != nullptr) {
data.potential_dof_transformation->InvTransformPrimal(
element_potential
);
}
quadrature_potential.SetSize(data.quadrature_data.Size());
data.potential_basis.Mult(element_potential, quadrature_potential);
for (int q = 0; q < quadrature_potential.Size(); ++q) {
quadrature_potential(q) *= data.quadrature_data(q);
}
element_action.SetSize(data.density_dofs.Size());
data.density_basis.MultTranspose(
quadrature_potential, element_action
);
if (data.density_dof_transformation != nullptr) {
data.density_dof_transformation->TransformDual(element_action);
}
local_action.AddElementVector(data.density_dofs, element_action);
}
local_to_true(*m_fem.densityFes, local_action, action);
}
bool PreparedMappedGravitySourceOperator::IsPrepared() const noexcept {
return m_is_prepared;
}
std::uint64_t
PreparedMappedGravitySourceOperator::GetPreparationCount() const noexcept {
return m_preparation_count;
}
} // namespace mean_field::operators

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@@ -0,0 +1,441 @@
module;
#include <cmath>
#include <cstdint>
#include <memory>
#include <mfem.hpp>
module mean_field;
import :operators.prepared_hdiv_mass;
namespace {
int get_operator_size(const mean_field::fem::FEM &f) {
MFEM_VERIFY(
f.gravityFluxFes != nullptr,
"PreparedMappedHDivMassOperator requires the "
"gravity-gradient finite-element space."
);
return f.gravityFluxFes->GetTrueVSize();
}
void true_to_local(
const mfem::ParFiniteElementSpace &finite_element_space,
const mfem::Vector &true_vector,
mfem::Vector &local_vector
) {
local_vector.SetSize(finite_element_space.GetVSize());
const mfem::Operator *prolongation =
finite_element_space.GetProlongationMatrix();
if (prolongation != nullptr) {
prolongation->Mult(true_vector, local_vector);
} else {
local_vector = true_vector;
}
}
int find_representative_element(
const mean_field::fem::FEM &f,
const mfem::Array<int> &marker
) {
for (int element_id = 0; element_id < f.mesh->GetNE(); ++element_id) {
const int attribute = f.mesh->GetAttribute(element_id);
if (attribute > 0 && attribute <= marker.Size() &&
marker[attribute - 1] != 0) {
return element_id;
}
}
return -1;
}
void validate_uniform_domain_discretization(
const mean_field::fem::FEM &f,
const mfem::Array<int> &marker,
const int representative_element_id
) {
const mfem::FiniteElement &representative_element =
*f.gravityFluxFes->GetFE(representative_element_id);
const mfem::ElementTransformation &representative_transformation =
*f.mesh->GetElementTransformation(representative_element_id);
for (int element_id = 0; element_id < f.mesh->GetNE(); ++element_id) {
const int attribute = f.mesh->GetAttribute(element_id);
if (attribute <= 0 || attribute > marker.Size() ||
marker[attribute - 1] == 0) {
continue;
}
const mfem::FiniteElement &element =
*f.gravityFluxFes->GetFE(element_id);
const mfem::ElementTransformation &transformation =
*f.mesh->GetElementTransformation(element_id);
MFEM_VERIFY(
element.GetGeomType() == representative_element.GetGeomType(),
"Prepared H(div) mass domains currently require a uniform "
"element "
"geometry."
);
MFEM_VERIFY(
element.GetOrder() == representative_element.GetOrder(),
"Prepared H(div) mass domains currently require a uniform "
"finite-element order."
);
MFEM_VERIFY(
transformation.OrderW() ==
representative_transformation.OrderW(),
"Prepared H(div) mass domains currently require a uniform "
"geometry-weight order."
);
}
}
class FrozenMappedHDivMassCoefficient final
: public mfem::MatrixCoefficient {
public:
FrozenMappedHDivMassCoefficient(
const mean_field::fem::FEM &f,
const mean_field::mapping::DomainMapperStateless &domain_mapper,
const mfem::Vector &displacement_true,
bool elevates_vacuum
)
: MatrixCoefficient(domain_mapper.GetDimension()),
m_fem(f),
m_domain_mapper(domain_mapper),
m_workspace(domain_mapper.GetDimension()),
m_elevates_vacuum(elevates_vacuum) {
true_to_local(
*m_fem.displacementFes, displacement_true, m_displacement_local
);
}
void Eval(
mfem::DenseMatrix &mass_tensor,
mfem::ElementTransformation &transformation,
const mfem::IntegrationPoint &integration_point
) override {
transformation.SetIntPoint(&integration_point);
const int element_id = transformation.ElementNo;
MFEM_VERIFY(
element_id >= 0 && element_id < m_fem.mesh->GetNE(),
"Mapped H(div) mass coefficient received an invalid element ID."
);
const bool element_is_vacuum =
transformation.Attribute ==
m_domain_mapper.GetVacuumElementAttribute();
if (element_is_vacuum != m_elevates_vacuum) {
mass_tensor.SetSize(m_domain_mapper.GetDimension());
mass_tensor = 0.0;
return;
}
LoadElement(element_id);
const mean_field::mapping::ElementMappingData mapping_data{
.displacement = *m_displacement_data,
.compactification = *m_compactification_data
};
mean_field::mapping::VolumeMappingContext mapping_context;
const mean_field::mapping::MappingStatus status =
m_domain_mapper.EvaluateVolume(
mapping_data, transformation, integration_point,
m_workspace, mapping_context
);
MFEM_VERIFY(
status == mean_field::mapping::MappingStatus::valid,
"Stateless domain mapping failed while preparing the H(div) "
"mass "
"operator. Mapping status = "
<< static_cast<int>(status)
<< ", element ID = " << element_id
<< ", element attribute = " << transformation.Attribute
<< ", coefficient domain = "
<< (m_elevates_vacuum ? "vacuum" : "stellar")
);
const mfem::DenseMatrix &mapping_jacobian =
mapping_context.mapping.mapping_jacobian;
const double mapping_determinant =
mapping_context.mapping.mapping_determinant;
MFEM_VERIFY(
std::isfinite(mapping_determinant) && mapping_determinant > 0.0,
"Prepared H(div) mass operator encountered a non-positive or "
"non-finite mapping determinant."
);
mfem::MultAtB(mapping_jacobian, mapping_jacobian, mass_tensor);
mass_tensor *= 1.0 / mapping_determinant;
}
private:
void LoadElement(const int element_id) {
if (element_id == m_cached_element_id) {
return;
}
const mfem::FiniteElement &displacement_element =
*m_fem.displacementFes->GetFE(element_id);
const mfem::FiniteElement &compactification_element =
*m_fem.compactificationFes->GetFE(element_id);
mfem::DofTransformation *displacement_dof_transformation =
m_fem.displacementFes->GetElementVDofs(
element_id, m_displacement_dofs
);
mfem::DofTransformation *compactification_dof_transformation =
m_fem.compactificationFes->GetElementDofs(
element_id, m_compactification_dofs
);
m_displacement_local.GetSubVector(
m_displacement_dofs, m_element_displacement
);
m_fem.compactificationCoordinate->GetSubVector(
m_compactification_dofs, m_element_compactification
);
if (displacement_dof_transformation != nullptr) {
displacement_dof_transformation->InvTransformPrimal(
m_element_displacement
);
}
if (compactification_dof_transformation != nullptr) {
compactification_dof_transformation->InvTransformPrimal(
m_element_compactification
);
}
m_displacement_data = std::make_unique<
mean_field::mapping::ElementDisplacementData>(
mean_field::mapping::ElementDisplacementDataFromElementVDofs(
displacement_element, m_element_displacement
)
);
m_compactification_data = std::make_unique<
mean_field::mapping::ElementCompactificationData>(
compactification_element, m_element_compactification
);
m_cached_element_id = element_id;
}
const mean_field::fem::FEM &m_fem;
const mean_field::mapping::DomainMapperStateless &m_domain_mapper;
mfem::Vector m_displacement_local;
mfem::Array<int> m_displacement_dofs;
mfem::Array<int> m_compactification_dofs;
mfem::Vector m_element_displacement;
mfem::Vector m_element_compactification;
std::unique_ptr<mean_field::mapping::ElementDisplacementData>
m_displacement_data;
std::unique_ptr<mean_field::mapping::ElementCompactificationData>
m_compactification_data;
mean_field::mapping::DomainMapperStateless::Workspace m_workspace;
int m_cached_element_id{-1};
bool m_elevates_vacuum;
};
} // namespace
namespace mean_field::operators {
PreparedMappedHDivMassOperator::PreparedMappedHDivMassOperator(
const fem::FEM &f,
const mapping::DomainMapperStateless &domain_mapper
)
: Operator(get_operator_size(f)),
m_fem(f),
m_domain_mapper(domain_mapper) {
MFEM_VERIFY(
f.mesh != nullptr, "PreparedMappedHDivMassOperator requires a mesh."
);
MFEM_VERIFY(
f.gravityFluxFes != nullptr,
"PreparedMappedHDivMassOperator requires the "
"gravity-gradient finite-element space."
);
MFEM_VERIFY(
f.displacementFes != nullptr,
"PreparedMappedHDivMassOperator requires the "
"displacement finite-element space."
);
MFEM_VERIFY(
f.compactificationFes != nullptr,
"PreparedMappedHDivMassOperator requires the compactification "
"finite-element space."
);
MFEM_VERIFY(
f.compactificationCoordinate != nullptr,
"PreparedMappedHDivMassOperator requires the compactification "
"coordinate."
);
MFEM_VERIFY(
f.quadratureFactory != nullptr,
"PreparedMappedHDivMassOperator requires the quadrature-rule "
"factory."
);
MFEM_VERIFY(
domain_mapper.GetDimension() == f.mesh->Dimension(),
"The stateless domain-mapper dimension does not match the mesh "
"dimension."
);
utils::populate_element_mask(
f.mesh.get(), utils::DOMAINS::STELLAR, m_stellar_marker
);
utils::populate_element_mask(
f.mesh.get(), utils::DOMAINS::VACUUM, m_vacuum_marker
);
const int stellar_element_id =
find_representative_element(f, m_stellar_marker);
const int vacuum_element_id =
find_representative_element(f, m_vacuum_marker);
MFEM_VERIFY(
stellar_element_id >= 0, "PreparedMappedHDivMassOperator requires "
"at least one stellar element."
);
MFEM_VERIFY(
vacuum_element_id >= 0,
"PreparedMappedHDivMassOperator requires at "
"least one compactified vacuum element."
);
validate_uniform_domain_discretization(
f, m_stellar_marker, stellar_element_id
);
validate_uniform_domain_discretization(
f, m_vacuum_marker, vacuum_element_id
);
}
void PreparedMappedHDivMassOperator::Prepare(
const mfem::Vector &displacement_true
) {
MFEM_VERIFY(
displacement_true.Size() == m_fem.displacementFes->GetTrueVSize(),
"PreparedMappedHDivMassOperator received a displacement vector "
"with "
"the wrong size."
);
for (int i = 0; i < displacement_true.Size(); ++i) {
MFEM_VERIFY(
std::isfinite(displacement_true(i)),
"PreparedMappedHDivMassOperator received a non-finite "
"displacement "
"value."
);
}
const int stellar_element_id =
find_representative_element(m_fem, m_stellar_marker);
const int vacuum_element_id =
find_representative_element(m_fem, m_vacuum_marker);
const mfem::FiniteElement &stellar_element =
*m_fem.gravityFluxFes->GetFE(stellar_element_id);
const mfem::FiniteElement &vacuum_element =
*m_fem.gravityFluxFes->GetFE(vacuum_element_id);
mfem::ElementTransformation &stellar_transformation =
*m_fem.mesh->GetElementTransformation(stellar_element_id);
mfem::ElementTransformation &vacuum_transformation =
*m_fem.mesh->GetElementTransformation(vacuum_element_id);
m_mass_form.reset();
m_stellar_mass_coefficient.reset();
m_vacuum_mass_coefficient.reset();
m_stellar_mass_coefficient =
std::make_unique<FrozenMappedHDivMassCoefficient>(
m_fem, m_domain_mapper, displacement_true, false
);
m_vacuum_mass_coefficient =
std::make_unique<FrozenMappedHDivMassCoefficient>(
m_fem, m_domain_mapper, displacement_true, true
);
m_mass_form =
std::make_unique<mfem::ParBilinearForm>(m_fem.gravityFluxFes.get());
m_mass_form->SetAssemblyLevel(mfem::AssemblyLevel::PARTIAL);
auto stellar_integrator =
std::make_unique<mfem::VectorFEMassIntegrator>(
*m_stellar_mass_coefficient
);
auto vacuum_integrator = std::make_unique<mfem::VectorFEMassIntegrator>(
*m_vacuum_mass_coefficient
);
m_fem.quadratureFactory->configure_gravity_hdiv_mass(
*stellar_integrator, quadrature::QuadratureRole::discretization,
stellar_element, stellar_transformation, utils::DOMAINS::STELLAR,
quadrature::MappingKind::general
);
m_fem.quadratureFactory->configure_gravity_hdiv_mass(
*vacuum_integrator, quadrature::QuadratureRole::discretization,
vacuum_element, vacuum_transformation, utils::DOMAINS::VACUUM,
quadrature::MappingKind::kelvin
);
m_mass_form->AddDomainIntegrator(
stellar_integrator.release(), m_stellar_marker
);
m_mass_form->AddDomainIntegrator(
vacuum_integrator.release(), m_vacuum_marker
);
m_mass_form->Assemble();
m_is_prepared = true;
++m_preparation_count;
}
void PreparedMappedHDivMassOperator::Mult(
const mfem::Vector &gravity_gradient_true,
mfem::Vector &action
) const {
MFEM_VERIFY(
m_is_prepared, "PreparedMappedHDivMassOperator must be prepared "
"before Mult is called."
);
MFEM_VERIFY(
m_mass_form != nullptr, "PreparedMappedHDivMassOperator has no "
"assembled partial-assembly form."
);
MFEM_VERIFY(
gravity_gradient_true.Size() == Width(),
"PreparedMappedHDivMassOperator received a gravity-gradient vector "
"with the wrong size."
);
action.SetSize(Height());
m_mass_form->Mult(gravity_gradient_true, action);
}
bool PreparedMappedHDivMassOperator::IsPrepared() const noexcept {
return m_is_prepared;
}
std::uint64_t
PreparedMappedHDivMassOperator::GetPreparationCount() const noexcept {
return m_preparation_count;
}
} // namespace mean_field::operators

File diff suppressed because it is too large Load Diff

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@@ -1,21 +1,55 @@
module;
#include "mfem.hpp"
#include <source_location>
#include <array>
#include <cmath>
#include <format>
#include <source_location>
#include <string_view>
#include <unordered_map>
#include <format>
module mean_field;
import :mapping.coefficients;
import :analysis.integral;
namespace {
double centrifugal_potential(const mfem::Vector &phys_x, const double omega) {
double centrifugal_potential(
const mfem::Vector &phys_x,
const double omega
) {
const double s2 = std::pow(phys_x(0), 2) + std::pow(phys_x(1), 2);
return -0.5 * s2 * std::pow(omega, 2);
}
}
void grid_function_to_true_dofs(
const mfem::ParFiniteElementSpace &finite_element_space,
const mfem::GridFunction &grid_function,
mfem::Vector &true_dofs
) {
MFEM_VERIFY(
grid_function.Size() == finite_element_space.GetVSize(),
"The grid function does not match the requested finite-element "
"space."
);
true_dofs.SetSize(finite_element_space.GetTrueVSize());
const mfem::Operator *restriction =
finite_element_space.GetRestrictionMatrix();
if (restriction != nullptr) {
restriction->Mult(grid_function, true_dofs);
} else {
MFEM_VERIFY(
grid_function.Size() == true_dofs.Size(),
"A finite-element space without a restriction operator must "
"have "
"matching local and true sizes."
);
true_dofs = grid_function;
}
}
} // namespace
namespace mean_field::physics {
GravitySolution grav_potential(
@@ -24,68 +58,106 @@ namespace mean_field::physics {
const mfem::GridFunction &rho,
const bool phi_warm
) {
MFEM_VERIFY(
f.densityFes != nullptr && rho.FESpace() == f.densityFes.get(),
"Gravity solve requires rho to use the registered density space."
);
MFEM_VERIFY(
f.gravityPotentialFes != nullptr,
"Gravity solve requires the registered gravity-potential space."
);
mfem::Array<int> outer_bdr_marker(f.mesh->bdr_attributes.Max());
outer_bdr_marker = 0;
outer_bdr_marker = 0;
outer_bdr_marker[1] = 1;
mfem::ParLinearForm g_rhs(f.RT_fes.get());
mfem::ParLinearForm g_rhs(f.gravityFluxFes.get());
// ReSharper disable once CppTooWideScope
std::unique_ptr<mfem::Coefficient> boundary_potential_coeff;
if (!f.has_mapping()) { // We only need to explicitly add a boundary integrator if a mapping is not being used. In the case where the outer domain has been compactified the φ=0 boundary condition is the natural condition and MFEM automatically handles this
auto boundary_potential = [&f](const mfem::Vector& x_physical) {
if (!f.has_mapping()) { // We only need to explicitly add a boundary
// integrator if a mapping is not being used. In
// the case where the outer domain has been
// compactified the φ=0 boundary condition is
// the natural condition and MFEM automatically
// handles this
auto boundary_potential = [&f](const mfem::Vector &x_physical) {
return l2_multipole_potential(f, utils::MASS, x_physical);
};
boundary_potential_coeff = std::make_unique<mfem::FunctionCoefficient>(boundary_potential);
auto boundary_integrator = std::make_unique<mfem::VectorFEBoundaryFluxLFIntegrator>(*boundary_potential_coeff);
const mfem::FiniteElement& boundary_element = *f.RT_fes->GetTypicalTraceElement();
boundary_potential_coeff =
std::make_unique<mfem::FunctionCoefficient>(boundary_potential);
auto boundary_integrator =
std::make_unique<mfem::VectorFEBoundaryFluxLFIntegrator>(
*boundary_potential_coeff
);
const mfem::FiniteElement &boundary_element =
*f.gravityFluxFes->GetTypicalTraceElement();
f.quadrature_factory->configure_gravity_boundary(*boundary_integrator, quadrature::QuadratureRole::discretization, boundary_element, utils::DOMAINS::VACUUM, quadrature::MappingKind::none);
g_rhs.AddBoundaryIntegrator(boundary_integrator.release(), outer_bdr_marker);
f.quadratureFactory->configure_gravity_boundary(
*boundary_integrator,
quadrature::QuadratureRole::discretization, boundary_element,
utils::DOMAINS::VACUUM, quadrature::MappingKind::none
);
g_rhs.AddBoundaryIntegrator(
boundary_integrator.release(), outer_bdr_marker
);
}
g_rhs.Assemble();
mfem::GridFunctionCoefficient rho_coeff(&rho);
mfem::ConstantCoefficient G4pi(4.0 * M_PI * utils::G);
mfem::ProductCoefficient source_coeff(G4pi, rho_coeff);
mfem::ParLinearForm f_rhs(f.L2_fes.get());
mfem::ParLinearForm f_rhs(f.gravityPotentialFes.get());
std::unique_ptr<mfem::Coefficient> mapped_source_coeff;
mfem::Coefficient* active_source_coeff = &source_coeff;
quadrature::MappingKind source_mapping_kind = quadrature::MappingKind::none;
mfem::Coefficient *active_source_coeff = &source_coeff;
quadrature::MappingKind source_mapping_kind =
quadrature::MappingKind::none;
if (f.has_mapping()) {
mapped_source_coeff = std::make_unique<mapping::MappedScalarCoefficient>(*f.mapping, source_coeff);
mapped_source_coeff =
std::make_unique<mapping::MappedScalarCoefficient>(
*f.mapping, source_coeff
);
active_source_coeff = mapped_source_coeff.get();
source_mapping_kind = quadrature::MappingKind::general;
}
auto source_integrator = std::make_unique<mfem::DomainLFIntegrator>(*active_source_coeff);
const mfem::FiniteElement& source_test_element = *f.L2_fes->GetTypicalFE();
const mfem::ElementTransformation& source_transformation = *f.mesh->GetElementTransformation(0);
const int source_coefficient_order = f.L2_fes->GetMaxElementOrder();
auto source_integrator =
std::make_unique<mfem::DomainLFIntegrator>(*active_source_coeff);
const mfem::FiniteElement &source_test_element =
*f.gravityPotentialFes->GetTypicalFE();
const mfem::ElementTransformation &source_transformation =
*f.mesh->GetElementTransformation(0);
const int source_coefficient_order = f.densityFes->GetMaxElementOrder();
f.quadrature_factory->configure_gravity_source(*source_integrator, quadrature::QuadratureRole::discretization, source_test_element, source_transformation, source_coefficient_order, utils::DOMAINS::STELLAR, source_mapping_kind);
f_rhs.AddDomainIntegrator(source_integrator.release(), f.gravity_context.stellar_mask);
f.quadratureFactory->configure_gravity_source(
*source_integrator, quadrature::QuadratureRole::discretization,
source_test_element, source_transformation,
source_coefficient_order, utils::DOMAINS::STELLAR,
source_mapping_kind
);
f_rhs.AddDomainIntegrator(
source_integrator.release(), f.gravityContext.stellar_mask
);
f_rhs.Assemble();
mfem::BlockVector RHS(f.gravity_block_true_offsets);
mfem::BlockVector RHS(f.gravityBlockTrueOffsets);
RHS.GetBlock(0) = *g_rhs.ParallelAssemble();
RHS.GetBlock(1) = *f_rhs.ParallelAssemble();
mfem::BlockVector X(f.gravity_block_true_offsets);
mfem::BlockVector X(f.gravityBlockTrueOffsets);
X = 0.0;
f.gravity_context.minres->SetOperator(*f.gravity_context.block_A);
f.gravity_context.minres->Mult(RHS, X);
f.gravityContext.minres->SetOperator(*f.gravityContext.block_A);
f.gravityContext.minres->Mult(RHS, X);
GravitySolution solution(f);
solution.gradPhi.SetFromTrueDofs(X.GetBlock(0));
solution.phi.SetFromTrueDofs(X.GetBlock(1));
return solution;
}
mfem::GridFunction get_potential(
@@ -105,18 +177,21 @@ namespace mean_field::physics {
std::unique_ptr<mfem::Coefficient> centrifugal_coeff;
if (fem.has_mapping()) {
centrifugal_coeff = std::make_unique<mapping::PhysicalPositionFunctionCoefficient>(*fem.mapping, rot);
centrifugal_coeff = std::make_unique<
mapping::PhysicalPositionFunctionCoefficient>(
*fem.mapping, rot
);
} else {
centrifugal_coeff = std::make_unique<mfem::FunctionCoefficient>(rot);
centrifugal_coeff =
std::make_unique<mfem::FunctionCoefficient>(rot);
}
mfem::GridFunction centrifugal_gf(fem.H1_fes.get());
mfem::GridFunction centrifugal_gf(fem.gravityPotentialFes.get());
centrifugal_gf.ProjectCoefficient(*centrifugal_coeff);
phi.phi += centrifugal_gf;
}
return phi.phi;
}
mfem::DenseMatrix compute_quadrupole_moment_tensor(
@@ -128,11 +203,23 @@ namespace mean_field::physics {
mfem::DenseMatrix local_Q(dim, dim);
local_Q = 0.0;
for (int i = 0; i < fem.H1_fes->GetNE(); ++i) {
if (fem.mesh->GetAttribute(i) == 3) continue;
for (int i = 0; i < fem.mesh->GetNE(); ++i) {
if (fem.mesh->GetAttribute(i) == 3)
continue;
mfem::ElementTransformation *trans = fem.mesh->GetElementTransformation(i);
const mfem::IntegrationRule &ir = *fem.int_rule;
mfem::ElementTransformation *trans =
fem.mesh->GetElementTransformation(i);
using DensityField = field::Field<field::Density>;
const quadrature::Query query =
DensityField::make_query<field::Density::Form::Quadrupole>(
quadrature::QuadratureRole::diagnostic, trans->OrderW(),
std::array<int, 1>{2}, utils::DOMAINS::STELLAR,
fem.has_mapping() ? quadrature::MappingKind::general
: quadrature::MappingKind::none
);
const mfem::IntegrationRule &ir =
*fem.quadratureFactory->get(query, trans->GetGeometryType())
.integration_rule;
for (int j = 0; j < ir.GetNPoints(); ++j) {
const mfem::IntegrationPoint &ip = ir.IntPoint(j);
@@ -164,7 +251,8 @@ namespace mean_field::physics {
for (int m = 0; m < dim; ++m) {
for (int n = 0; n < dim; ++n) {
const double delta = (m == n) ? 1.0 : 0.0;
const double contrib = 3.0 * x_prime(m) * x_prime(n) - delta * r_sq;
const double contrib =
3.0 * x_prime(m) * x_prime(n) - delta * r_sq;
local_Q(m, n) += rho_val * contrib * weight;
}
}
@@ -172,7 +260,10 @@ namespace mean_field::physics {
}
mfem::DenseMatrix global_Q(dim, dim);
MPI_Allreduce(local_Q.GetData(), global_Q.GetData(), dim * dim, MPI_DOUBLE, MPI_SUM, fem.H1_fes->GetComm());
MPI_Allreduce(
local_Q.GetData(), global_Q.GetData(), dim * dim, MPI_DOUBLE,
MPI_SUM, fem.mesh->GetComm()
);
return global_Q;
}
@@ -183,7 +274,8 @@ namespace mean_field::physics {
const mfem::Vector &phys_x
) {
const double r = phys_x.Norml2();
if (r < 1e-12) return 0.0;
if (r < 1e-12)
return 0.0;
const int dim = fem.mesh->Dimension();
@@ -197,7 +289,8 @@ namespace mean_field::physics {
}
}
const double l2_contrib = -(utils::G / (2.0 * std::pow(r, 3))) * l2_mult_factor;
const double l2_contrib =
-(utils::G / (2.0 * std::pow(r, 3))) * l2_mult_factor;
const double l0_contrib = -utils::G * total_mass / r;
@@ -211,87 +304,331 @@ namespace mean_field::physics {
// ==========================================
// 1. Partially Assemble the High-Order Mass Block
// ==========================================
f.gravity_context.m_form = std::make_unique<mfem::ParBilinearForm>(f.RT_fes.get());
f.gravity_context.m_form->SetAssemblyLevel(mfem::AssemblyLevel::PARTIAL);
f.gravityContext.m_form =
std::make_unique<mfem::ParBilinearForm>(f.gravityFluxFes.get());
f.gravityContext.m_form->SetAssemblyLevel(mfem::AssemblyLevel::PARTIAL);
std::unique_ptr<mfem::VectorFEMassIntegrator> hdiv_mass_integrator;
if (f.has_mapping()) {
f.gravity_context.mapped_hdiv_mass_coeff = std::make_unique<mapping::MappedHDivMassCoefficient>(*f.mapping, f.mesh->Dimension());
hdiv_mass_integrator = std::make_unique<mfem::VectorFEMassIntegrator>(*f.gravity_context.mapped_hdiv_mass_coeff);
f.gravityContext.mapped_hdiv_mass_coeff =
std::make_unique<mapping::MappedHDivMassCoefficient>(
*f.mapping, f.mesh->Dimension()
);
hdiv_mass_integrator =
std::make_unique<mfem::VectorFEMassIntegrator>(
*f.gravityContext.mapped_hdiv_mass_coeff
);
} else {
f.gravity_context.mapped_hdiv_mass_coeff.reset();
hdiv_mass_integrator = std::make_unique<mfem::VectorFEMassIntegrator>();
f.gravityContext.mapped_hdiv_mass_coeff.reset();
hdiv_mass_integrator =
std::make_unique<mfem::VectorFEMassIntegrator>();
}
const mfem::FiniteElement& hdiv_element = *f.RT_fes->GetTypicalFE();
const mfem::ElementTransformation& hdiv_transformation = *f.mesh->GetElementTransformation(0);
const quadrature::MappingKind mapping_kind = f.has_mapping() ? quadrature::MappingKind::general : quadrature::MappingKind::none;
const mfem::FiniteElement &hdiv_element =
*f.gravityFluxFes->GetTypicalFE();
const mfem::ElementTransformation &hdiv_transformation =
*f.mesh->GetElementTransformation(0);
const quadrature::MappingKind mapping_kind =
f.has_mapping() ? quadrature::MappingKind::general
: quadrature::MappingKind::none;
f.quadrature_factory->configure_gravity_hdiv_mass(*hdiv_mass_integrator, quadrature::QuadratureRole::discretization, hdiv_element, hdiv_transformation, utils::DOMAINS::ALL, mapping_kind);
f.gravity_context.m_form->AddDomainIntegrator(hdiv_mass_integrator.release());
f.gravity_context.m_form->Assemble();
f.quadratureFactory->configure_gravity_hdiv_mass(
*hdiv_mass_integrator, quadrature::QuadratureRole::discretization,
hdiv_element, hdiv_transformation, utils::DOMAINS::ALL, mapping_kind
);
f.gravityContext.m_form->AddDomainIntegrator(
hdiv_mass_integrator.release()
);
f.gravityContext.m_form->Assemble();
// ==========================================
// 2. Partially Assemble the High-Order Divergence Block
// ==========================================
f.gravity_context.b_form = std::make_unique<mfem::ParMixedBilinearForm>(f.RT_fes.get(), f.L2_fes.get());
f.gravity_context.b_form->SetAssemblyLevel(mfem::AssemblyLevel::PARTIAL);
f.gravityContext.b_form = std::make_unique<mfem::ParMixedBilinearForm>(
f.gravityFluxFes.get(), f.gravityPotentialFes.get()
);
f.gravityContext.b_form->SetAssemblyLevel(mfem::AssemblyLevel::PARTIAL);
auto divergence_discretization_integrator = std::make_unique<mfem::VectorFEDivergenceIntegrator>();
const mfem::FiniteElement& divergence_discretization_test_element = *f.L2_fes->GetTypicalFE();
auto divergence_discretization_integrator =
std::make_unique<mfem::VectorFEDivergenceIntegrator>();
const mfem::FiniteElement &divergence_discretization_test_element =
*f.gravityPotentialFes->GetTypicalFE();
f.quadrature_factory->configure_gravity_divergence(*divergence_discretization_integrator, quadrature::QuadratureRole::discretization, hdiv_element, divergence_discretization_test_element, hdiv_transformation, utils::DOMAINS::ALL, quadrature::MappingKind::none);
f.gravity_context.b_form->AddDomainIntegrator(divergence_discretization_integrator.release());
f.gravity_context.b_form->Assemble();
f.quadratureFactory->configure_gravity_divergence(
*divergence_discretization_integrator,
quadrature::QuadratureRole::discretization, hdiv_element,
divergence_discretization_test_element, hdiv_transformation,
utils::DOMAINS::ALL, quadrature::MappingKind::none
);
f.gravityContext.b_form->AddDomainIntegrator(
divergence_discretization_integrator.release()
);
f.gravityContext.b_form->Assemble();
MFEM_VERIFY(
f.domainMapperStateless != nullptr,
"Gravity source partial assembly requires the stateless domain "
"mapper."
);
mfem::Vector displacement_true(f.displacementFes->GetTrueVSize());
displacement_true = 0.0;
const mfem::GridFunction *active_displacement =
f.mapping->GetDisplacement();
if (active_displacement != nullptr) {
grid_function_to_true_dofs(
*f.displacementFes, *active_displacement, displacement_true
);
}
auto source_form =
std::make_unique<operators::PreparedMappedGravitySourceOperator>(
f, *f.domainMapperStateless
);
source_form->Prepare(displacement_true);
f.gravityContext.source_form = std::move(source_form);
// ==========================================
// 3. Assemble Global Block Operator
// ==========================================
f.gravity_context.BT = std::make_unique<mfem::TransposeOperator>(f.gravity_context.b_form.get());
f.gravityContext.BT = std::make_unique<mfem::TransposeOperator>(
f.gravityContext.b_form.get()
);
f.gravity_context.block_A = std::make_unique<mfem::BlockOperator>(f.gravity_block_true_offsets);
f.gravity_context.block_A->SetBlock(0, 0, f.gravity_context.m_form.get());
f.gravity_context.block_A->SetBlock(0, 1, f.gravity_context.BT.get());
f.gravity_context.block_A->SetBlock(1, 0, f.gravity_context.b_form.get());
f.gravityContext.block_A =
std::make_unique<mfem::BlockOperator>(f.gravityBlockTrueOffsets);
f.gravityContext.block_A->SetBlock(0, 0, f.gravityContext.m_form.get());
f.gravityContext.block_A->SetBlock(0, 1, f.gravityContext.BT.get());
f.gravityContext.block_A->SetBlock(1, 0, f.gravityContext.b_form.get());
// ==========================================
// 4. Construct a mapped Schur preconditioner
// ==========================================
mfem::Vector mass_diagonal(f.RT_fes->GetTrueVSize());
f.gravity_context.m_form->AssembleDiagonal(mass_diagonal);
mfem::Vector mass_diagonal(f.gravityFluxFes->GetTrueVSize());
f.gravityContext.m_form->AssembleDiagonal(mass_diagonal);
mfem::Vector inverse_mass_diagonal(mass_diagonal);
for (int i = 0; i < inverse_mass_diagonal.Size(); ++i) {
MFEM_VERIFY(std::isfinite(inverse_mass_diagonal(i)) && inverse_mass_diagonal(i) > 0.0, "Mapped RT mass matrix has a non-positive or non-finite diagonal entry.");
MFEM_VERIFY(
std::isfinite(inverse_mass_diagonal(i)) &&
inverse_mass_diagonal(i) > 0.0,
"Mapped RT mass matrix has a non-positive or non-finite "
"diagonal "
"entry."
);
inverse_mass_diagonal(i) = 1.0 / inverse_mass_diagonal(i);
}
mfem::ParMixedBilinearForm b_preconditioner(f.RT_fes.get(), f.L2_fes.get());
auto divergence_preconditioner_integrator = std::make_unique<mfem::VectorFEDivergenceIntegrator>();
mfem::ParMixedBilinearForm b_preconditioner(
f.gravityFluxFes.get(), f.gravityPotentialFes.get()
);
auto divergence_preconditioner_integrator =
std::make_unique<mfem::VectorFEDivergenceIntegrator>();
const mfem::FiniteElement& divergence_trial_element = *f.RT_fes->GetTypicalFE();
const mfem::FiniteElement& divergence_test_element = *f.L2_fes->GetTypicalFE();
const mfem::ElementTransformation& divergence_transformation = *f.mesh->GetElementTransformation(0);
const mfem::FiniteElement &divergence_trial_element =
*f.gravityFluxFes->GetTypicalFE();
const mfem::FiniteElement &divergence_test_element =
*f.gravityPotentialFes->GetTypicalFE();
const mfem::ElementTransformation &divergence_transformation =
*f.mesh->GetElementTransformation(0);
f.quadrature_factory->configure_gravity_divergence(*divergence_preconditioner_integrator, quadrature::QuadratureRole::preconditioner, divergence_trial_element, divergence_test_element, divergence_transformation, utils::DOMAINS::ALL, quadrature::MappingKind::none);
b_preconditioner.AddDomainIntegrator(divergence_preconditioner_integrator.release());
f.quadratureFactory->configure_gravity_divergence(
*divergence_preconditioner_integrator,
quadrature::QuadratureRole::preconditioner,
divergence_trial_element, divergence_test_element,
divergence_transformation, utils::DOMAINS::ALL,
quadrature::MappingKind::none
);
b_preconditioner.AddDomainIntegrator(
divergence_preconditioner_integrator.release()
);
b_preconditioner.Assemble();
b_preconditioner.Finalize();
std::unique_ptr<mfem::HypreParMatrix> b_matrix(b_preconditioner.ParallelAssemble());
std::unique_ptr<mfem::HypreParMatrix> inverse_mass_b_transpose(b_matrix->Transpose());
std::unique_ptr<mfem::HypreParMatrix> b_matrix(
b_preconditioner.ParallelAssemble()
);
std::unique_ptr<mfem::HypreParMatrix> inverse_mass_b_transpose(
b_matrix->Transpose()
);
inverse_mass_b_transpose->ScaleRows(inverse_mass_diagonal);
f.gravity_context.Schur.reset(mfem::ParMult(b_matrix.get(), inverse_mass_b_transpose.get()));
f.gravityContext.Schur.reset(
mfem::ParMult(b_matrix.get(), inverse_mass_b_transpose.get())
);
// ==========================================
// 5. Wire Up the preconditioners
// ==========================================
f.gravity_context.prec_M = std::make_unique<mfem::OperatorJacobiSmoother>(mass_diagonal, empty_tdofs);
f.gravity_context.prec_Phi->SetOperator(*f.gravity_context.Schur);
f.gravity_context.block_prec->SetDiagonalBlock(0, f.gravity_context.prec_M.get());
f.gravity_context.block_prec->SetDiagonalBlock(1, f.gravity_context.prec_Phi.get());
f.gravityContext.prec_M =
std::make_unique<mfem::OperatorJacobiSmoother>(
mass_diagonal, empty_tdofs
);
f.gravityContext.prec_Phi->SetOperator(*f.gravityContext.Schur);
f.gravityContext.block_prec->SetDiagonalBlock(
0, f.gravityContext.prec_M.get()
);
f.gravityContext.block_prec->SetDiagonalBlock(
1, f.gravityContext.prec_Phi.get()
);
}
}
GravitySolution grav_potential_new(
fem::FEM &f,
const utils::Args &args,
const mfem::GridFunction &rho,
const mfem::GridFunction &displacement
) {
MFEM_VERIFY(
f.mesh != nullptr,
"Gravity initialization requires a parallel mesh."
);
MFEM_VERIFY(
f.densityFes != nullptr,
"Gravity initialization requires the density finite-element space."
);
MFEM_VERIFY(
f.gravityPotentialFes != nullptr,
"Gravity initialization requires the gravity-potential "
"finite-element "
"space."
);
MFEM_VERIFY(
f.gravityFluxFes != nullptr,
"Gravity initialization requires the "
"gravity-gradient finite-element space."
);
MFEM_VERIFY(
f.displacementFes != nullptr, "Gravity initialization requires the "
"displacement finite-element space."
);
MFEM_VERIFY(
f.domainMapperStateless != nullptr,
"Gravity initialization requires the stateless domain mapper."
);
MFEM_VERIFY(
f.gravityContext.b_form != nullptr,
"Gravity initialization requires the divergence operator."
);
MFEM_VERIFY(
f.gravityContext.BT != nullptr,
"Gravity initialization requires the transpose divergence operator."
);
MFEM_VERIFY(
f.gravityContext.block_prec != nullptr,
"Gravity initialization requires the gravity block preconditioner."
);
MFEM_VERIFY(
rho.FESpace() == f.densityFes.get(),
"Gravity initialization requires density to use the FEM density "
"space."
);
MFEM_VERIFY(
displacement.FESpace() == f.displacementFes.get(),
"Gravity initialization requires displacement to use the FEM "
"Vec_H1 "
"space."
);
using form = utils::blocks::gravity_field_form;
constexpr auto gravity_gradient_residual_block =
utils::blocks::get_residual_block<form>(
utils::blocks::gravity_field.gradient_term
);
constexpr auto gravity_poisson_residual_block =
utils::blocks::get_residual_block<form>(
utils::blocks::gravity_field.poisson_term
);
const std::array<int, form::value_block_count> value_sizes{
f.densityFes->GetTrueVSize(), f.displacementFes->GetTrueVSize(),
f.gravityFluxFes->GetTrueVSize(),
f.gravityPotentialFes->GetTrueVSize()
};
const std::array<int, form::residual_block_count> residual_sizes{
f.gravityFluxFes->GetTrueVSize(),
f.gravityPotentialFes->GetTrueVSize()
};
const utils::blocks::form_layout<form> layout(
value_sizes, residual_sizes
);
mfem::Vector density_true;
mfem::Vector displacement_true;
grid_function_to_true_dofs(*f.densityFes, rho, density_true);
grid_function_to_true_dofs(
*f.displacementFes, displacement, displacement_true
);
operators::context::gravity_field::GravityFieldLinearizationContext
linearization_context(f, *f.domainMapperStateless);
operators::GravityFieldJacobianOperator gravity_jacobian(
f, *f.domainMapperStateless, linearization_context,
layout.value_offsets(), layout.residual_offsets()
);
operators::GravityFieldOperator gravity_operator(
f, *f.domainMapperStateless, linearization_context,
layout.value_offsets(), gravity_jacobian
);
operators::context::gravity_field::GravityFieldGeometryContext
reduced_geometry_context(f, *f.domainMapperStateless);
operators::ReducedGravityFieldOperator reduced_operator(
gravity_operator, reduced_geometry_context, displacement_true
);
mfem::Vector right_hand_side;
reduced_operator.BuildRightHandSide(density_true, right_hand_side);
MFEM_VERIFY(
right_hand_side.Size() == reduced_operator.Height(),
"The reduced gravity right-hand side has the wrong size."
);
mfem::BlockVector gravity_state(
reduced_operator.GetGravityTrueOffsets()
);
gravity_state = 0.0;
mfem::MINRESSolver minres(f.mesh->GetComm());
minres.SetOperator(reduced_operator);
minres.SetPreconditioner(*f.gravityContext.block_prec);
minres.SetRelTol(args.p.rtol);
minres.SetAbsTol(args.p.atol);
minres.SetMaxIter(args.p.max_iters);
minres.SetPrintLevel(1);
minres.Mult(right_hand_side, gravity_state);
MFEM_VERIFY(
minres.GetConverged(),
"The reduced gravity solve failed to converge."
);
GravitySolution solution(f);
solution.gradPhi.SetFromTrueDofs(
gravity_state.GetBlock(gravity_gradient_residual_block)
);
solution.phi.SetFromTrueDofs(
gravity_state.GetBlock(gravity_poisson_residual_block)
);
return solution;
}
} // namespace mean_field::physics

View File

@@ -1,17 +1,32 @@
module;
#include "mean_field.h"
#include <array>
module mean_field;
namespace mean_field::physics {
double compute_moment_of_inertia(const fem::FEM &fem, const mfem::GridFunction &rho_ref) {
double compute_moment_of_inertia(
const fem::FEM &fem,
const mfem::GridFunction &rho_ref
) {
double local_I = 0.0;
for (int i = 0; i < fem.mesh->GetNE(); i++) {
if (fem.mesh->GetAttribute(i) == 3) continue;
if (fem.mesh->GetAttribute(i) == 3)
continue;
mfem::ElementTransformation *T = fem.mesh->GetElementTransformation(i);
const mfem::IntegrationRule &ir = *fem.int_rule;
mfem::ElementTransformation *T =
fem.mesh->GetElementTransformation(i);
using DensityField = field::Field<field::Density>;
const quadrature::Query query =
DensityField::make_query<field::Density::Form::Quadrupole>(
quadrature::QuadratureRole::diagnostic, T->OrderW(),
std::array<int, 1>{2}, utils::DOMAINS::STELLAR,
quadrature::MappingKind::general
);
const mfem::IntegrationRule &ir =
*fem.quadratureFactory->get(query, T->GetGeometryType())
.integration_rule;
for (int j = 0; j < ir.GetNPoints(); j++) {
const mfem::IntegrationPoint &ip = ir.IntPoint(j);
@@ -22,7 +37,8 @@ namespace mean_field::physics {
mfem::Vector x_phys;
fem.mapping->GetPhysicalPoint(*T, ip, x_phys);
const double r_cyl_sq = x_phys(0) * x_phys(0) + x_phys(1) * x_phys(1);
const double r_cyl_sq =
x_phys(0) * x_phys(0) + x_phys(1) * x_phys(1);
const double detJ = std::fabs(fem.mapping->ComputeDetJ(*T, ip));
const double weight = T->Weight() * ip.weight * detJ;
@@ -31,8 +47,10 @@ namespace mean_field::physics {
}
double global_I = 0.0;
MPI_Allreduce(&local_I, &global_I, 1, MPI_DOUBLE, MPI_SUM, fem.H1_fes->GetComm());
MPI_Allreduce(
&local_I, &global_I, 1, MPI_DOUBLE, MPI_SUM, fem.mesh->GetComm()
);
return global_I;
}
}
} // namespace mean_field::physics

View File

@@ -11,7 +11,7 @@ namespace mean_field::utils {
mfem::Vector &x_ref
) {
const int dim = fem.mesh->Dimension();
x_ref = x_phys_target;
x_ref = x_phys_target;
mfem::Array<int> init_elem;
mfem::Array<mfem::IntegrationPoint> init_ip;
@@ -29,8 +29,10 @@ namespace mean_field::utils {
mfem::Array<mfem::IntegrationPoint> origin_ip;
fem.mesh->FindPoints(P_origin, origin_elem, origin_ip, false);
if (origin_elem.Size() > 0 && origin_elem[0] >= 0 && !fem.mapping->IsIdentity()) {
mfem::ElementTransformation *T0 = fem.mesh->GetElementTransformation(origin_elem[0]);
if (origin_elem.Size() > 0 && origin_elem[0] >= 0 &&
fem.mapping->HasDisplacementField()) {
mfem::ElementTransformation *T0 =
fem.mesh->GetElementTransformation(origin_elem[0]);
T0->SetIntPoint(&origin_ip[0]);
mfem::DenseMatrix J0(dim, dim), J0_inv(dim, dim);
@@ -81,7 +83,8 @@ namespace mean_field::utils {
if (elem_ids.Size() == 0 || elem_ids[0] < 0) {
find_failures++;
if (find_failures > 10) return false;
if (find_failures > 10)
return false;
double norm = x_ref.Norml2();
if (norm > 1e-15) {
@@ -92,10 +95,11 @@ namespace mean_field::utils {
continue;
}
int elemID = elem_ids[0];
int elemID = elem_ids[0];
const mfem::IntegrationPoint &ip = ips[0];
mfem::ElementTransformation *T = fem.mesh->GetElementTransformation(elemID);
mfem::ElementTransformation *T =
fem.mesh->GetElementTransformation(elemID);
T->SetIntPoint(&ip);
mfem::Vector current_x_phys(dim);
@@ -135,7 +139,8 @@ namespace mean_field::utils {
x_ref = x_ref_candidate;
} else {
find_failures++;
if (find_failures > 10) return false;
if (find_failures > 10)
return false;
if (double norm = x_ref.Norml2(); norm > 1e-15) {
x_ref *= 0.5 * RADIUS / norm;
} else {
@@ -155,7 +160,8 @@ namespace mean_field::utils {
const mapping::COORDINATE_SPACE rspace
) {
mfem::Vector x_search;
if (vspace == mapping::COORDINATE_SPACE::PHYSICAL && fem.has_mapping()) {
if (vspace == mapping::COORDINATE_SPACE::PHYSICAL &&
fem.has_mapping()) {
GetReferencePoint(fem, x, x_search);
} else {
x_search = x;
@@ -171,18 +177,22 @@ namespace mean_field::utils {
double local_val = 0.0;
if (elem_ids.Size() > 0 && elem_ids[0] >= 0) {
const double val = u.GetValue(elem_ids[0], ips[0]);
if (rspace == mapping::COORDINATE_SPACE::PHYSICAL && !fem.has_mapping()) {
MFEM_ABORT("Physical evaluation mode requested but no mapping provided. Check domain bounds and mapping setup.");
if (rspace == mapping::COORDINATE_SPACE::PHYSICAL &&
!fem.has_mapping()) {
MFEM_ABORT(
"Physical evaluation mode requested but no mapping "
"provided. Check "
"domain bounds and mapping setup."
);
}
local_val = val;
}
double global_val = 0.0;
MPI_Allreduce(&local_val, &global_val, 1, MPI_DOUBLE, MPI_MAX, fem.H1_fes->GetComm());
MPI_Allreduce(
&local_val, &global_val, 1, MPI_DOUBLE, MPI_MAX, fem.mesh->GetComm()
);
return global_val;
}
}
} // namespace mean_field::utils

View File

@@ -1,6 +1,6 @@
module;
#include <mfem.hpp>
#include <expected>
#include <mfem.hpp>
module mean_field;
import :boundary.contexts;
@@ -10,18 +10,22 @@ namespace mean_field::utils {
DOMAINS lhs,
DOMAINS rhs
) {
return static_cast<DOMAINS>(static_cast<uint8_t>(lhs) | static_cast<uint8_t>(rhs));
return static_cast<DOMAINS>(
static_cast<uint8_t>(lhs) | static_cast<uint8_t>(rhs)
);
}
DOMAINS operator&(
DOMAINS lhs,
DOMAINS rhs
) {
return static_cast<DOMAINS>(static_cast<uint8_t>(lhs) & static_cast<uint8_t>(rhs));
return static_cast<DOMAINS>(
static_cast<uint8_t>(lhs) & static_cast<uint8_t>(rhs)
);
}
void populate_element_mask(
const mfem::Mesh* mesh,
const mfem::Mesh *mesh,
const DOMAINS domain,
mfem::Array<int> &mask
) {
@@ -33,7 +37,8 @@ namespace mean_field::utils {
mask[0] = 1;
}
if ((domain & DOMAINS::ENVELOPE) == DOMAINS::ENVELOPE && max_attr >= 2) {
if ((domain & DOMAINS::ENVELOPE) == DOMAINS::ENVELOPE &&
max_attr >= 2) {
mask[1] = 1;
}
@@ -59,7 +64,8 @@ namespace mean_field::utils {
for (int j = 0; j < dofs.Size(); j++) {
int index = dofs[j];
if (index < 0) index = -1 - index;
if (index < 0)
index = -1 - index;
vdof_marker[index] = 1;
}
}
@@ -68,23 +74,28 @@ namespace mean_field::utils {
fes->MarkerToList(vdof_marker, ess_tdof);
}
std::expected<boundary::Bounds, boundary::BoundsError> discover_bounds(
std::expected<
boundary::Bounds,
boundary::BoundsError>
discover_bounds(
const mfem::Mesh *mesh,
const int vacuum_attr
) {
double local_min_r = std::numeric_limits<double>::max();
double local_max_r = -std::numeric_limits<double>::max();
bool found_vacuum = false;
bool found_vacuum = false;
for (int i = 0; i < mesh->GetNE(); ++i) {
if (mesh->GetAttribute(i) == vacuum_attr) {
found_vacuum = true;
mfem::Array<int> vertices;
mesh->GetElementVertices(i, vertices);
for (const int v: vertices) {
for (const int v : vertices) {
const double *coords = mesh->GetVertex(v);
double r = std::sqrt(coords[0] * coords[0] + coords[1] * coords[1] + coords[2] * coords[2]);
double r = std::sqrt(
coords[0] * coords[0] + coords[1] * coords[1] +
coords[2] * coords[2]
);
local_min_r = std::min(local_min_r, r);
local_max_r = std::max(local_max_r, r);
}
@@ -93,16 +104,22 @@ namespace mean_field::utils {
double global_min_r, global_max_r;
int global_found_vacuum;
int l_found = found_vacuum ? 1 : 0;
int l_found = found_vacuum ? 1 : 0;
MPI_Comm comm = MPI_COMM_WORLD;
if (const auto *pmesh = dynamic_cast<const mfem::ParMesh *>(mesh)) {
comm = pmesh->GetComm();
}
MPI_Allreduce(&local_min_r, &global_min_r, 1, MPI_DOUBLE, MPI_MIN, comm);
MPI_Allreduce(&local_max_r, &global_max_r, 1, MPI_DOUBLE, MPI_MAX, comm);
MPI_Allreduce(&l_found, &global_found_vacuum, 1, MPI_INT, MPI_MAX, comm);
MPI_Allreduce(
&local_min_r, &global_min_r, 1, MPI_DOUBLE, MPI_MIN, comm
);
MPI_Allreduce(
&local_max_r, &global_max_r, 1, MPI_DOUBLE, MPI_MAX, comm
);
MPI_Allreduce(
&l_found, &global_found_vacuum, 1, MPI_INT, MPI_MAX, comm
);
if (global_found_vacuum) {
return boundary::Bounds(global_min_r, global_max_r);
@@ -110,15 +127,11 @@ namespace mean_field::utils {
return std::unexpected(boundary::BoundsError::CANNOT_FIND_VACUUM);
}
int get_mesh_order(
const mfem::Mesh &mesh
) {
int get_mesh_order(const mfem::Mesh &mesh) {
if (mesh.GetNodes() != nullptr) {
return mesh.GetNodes()->FESpace()->GetMaxElementOrder();
}
return 1;
}
}
} // namespace mean_field::utils