171 lines
8.6 KiB
JavaScript
171 lines
8.6 KiB
JavaScript
/*
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@licstart The following is the entire license notice for the JavaScript code in this file.
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The MIT License (MIT)
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Copyright (C) 1997-2020 by Dimitri van Heesch
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Permission is hereby granted, free of charge, to any person obtaining a copy of this software
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and associated documentation files (the "Software"), to deal in the Software without restriction,
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including without limitation the rights to use, copy, modify, merge, publish, distribute,
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sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all copies or
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substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING
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BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
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DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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@licend The above is the entire license notice for the JavaScript code in this file
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*/
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var NAVTREE =
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[
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[ "GridFire", "index.html", [
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[ "Table of Contents", "index.html#autotoc_md2", null ],
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[ "Introduction", "index.html#autotoc_md3", [
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[ "Design Philosophy and Workflow", "index.html#autotoc_md4", null ],
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[ "Funding", "index.html#autotoc_md5", null ]
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] ],
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[ "Usage", "index.html#autotoc_md6", [
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[ "Python installation", "index.html#autotoc_md7", [
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[ "pypi", "index.html#autotoc_md8", null ],
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[ "source", "index.html#autotoc_md9", null ],
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[ "source for developers", "index.html#autotoc_md10", [
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[ "Patching Shared Object Files", "index.html#autotoc_md11", null ]
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] ]
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] ],
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[ "Automatic Build and Installation", "index.html#autotoc_md12", [
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[ "Script Build and Installation Instructions", "index.html#autotoc_md13", null ],
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[ "Currently, known good platforms", "index.html#autotoc_md14", null ]
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] ],
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[ "Manual Build Instructions", "index.html#autotoc_md15", [
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[ "Prerequisites", "index.html#autotoc_md16", [
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[ "Required", "index.html#autotoc_md17", null ],
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[ "Optional", "index.html#autotoc_md18", null ]
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] ],
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[ "Install Scripts", "index.html#autotoc_md19", [
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[ "Ease of Installation", "index.html#autotoc_md20", null ],
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[ "Reproducibility", "index.html#autotoc_md21", null ],
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[ "Examples", "index.html#autotoc_md22", [
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[ "TUI config and saving", "index.html#autotoc_md23", null ],
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[ "TUI config loading and meson setup", "index.html#autotoc_md24", null ],
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[ "CLI config loading, setup, and build", "index.html#autotoc_md25", null ]
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] ]
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] ],
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[ "Dependency Installation on Common Platforms", "index.html#autotoc_md26", null ],
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[ "Building the C++ Library", "index.html#autotoc_md27", [
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[ "Clang vs. GCC", "index.html#autotoc_md28", null ]
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] ],
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[ "Installing the Library", "index.html#autotoc_md29", null ],
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[ "Minimum compiler versions", "index.html#autotoc_md30", null ]
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] ],
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[ "Code Architecture and Logical Flow", "index.html#autotoc_md31", null ],
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[ "Engines", "index.html#autotoc_md32", [
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[ "GraphEngine", "index.html#autotoc_md33", null ],
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[ "GraphEngine Configuration Options", "index.html#autotoc_md34", null ],
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[ "Available Partition Functions", "index.html#autotoc_md35", null ],
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[ "AutoDiff", "index.html#autotoc_md36", null ]
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] ],
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[ "Reaclib in GridFire", "index.html#autotoc_md37", null ],
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[ "Engine Views", "index.html#autotoc_md38", [
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[ "A Note about composability", "index.html#autotoc_md39", null ]
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] ],
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[ "Numerical Solver Strategies", "index.html#autotoc_md40", [
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[ "NetworkSolverStrategy<EngineT>:", "index.html#autotoc_md41", null ],
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[ "NetIn and NetOut", "index.html#autotoc_md42", [
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[ "NetIn", "index.html#autotoc_md43", null ],
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[ "NetOut", "index.html#autotoc_md44", null ]
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] ],
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[ "CVODESolverStrategy", "index.html#autotoc_md45", null ]
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] ],
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[ "Python Extensibility", "index.html#autotoc_md46", null ]
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] ],
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[ "Usage Examples", "index.html#autotoc_md47", [
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[ "C++", "index.html#autotoc_md48", [
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[ "GraphEngine Initialization", "index.html#autotoc_md49", null ],
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[ "Adaptive Network View", "index.html#autotoc_md50", null ],
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[ "Composition Initialization", "index.html#autotoc_md51", null ],
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[ "Common Workflow Example", "index.html#autotoc_md52", null ],
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[ "Callback and Policy Example", "index.html#autotoc_md53", [
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[ "Callback Context", "index.html#autotoc_md54", null ]
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] ]
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] ],
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[ "Python", "index.html#autotoc_md55", [
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[ "Python Example for End Users", "index.html#autotoc_md56", null ]
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] ]
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] ],
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[ "Related Projects", "index.html#autotoc_md57", null ],
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[ "GridFire Python Usage Guide", "md_docs_2static_2usage.html", [
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[ "Installation", "md_docs_2static_2usage.html#autotoc_md60", [
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[ "1.1 PyPI Release", "md_docs_2static_2usage.html#autotoc_md61", null ],
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[ "1.2 Development from Source", "md_docs_2static_2usage.html#autotoc_md62", null ]
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] ],
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[ "Why These Engines and Views?", "md_docs_2static_2usage.html#autotoc_md64", null ],
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[ "Step-by-Step Example", "md_docs_2static_2usage.html#autotoc_md66", null ],
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[ "Visualizing Reaction Networks", "md_docs_2static_2usage.html#autotoc_md68", null ],
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[ "Beyond the Basics", "md_docs_2static_2usage.html#autotoc_md70", null ]
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] ],
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[ "Deprecated List", "deprecated.html", null ],
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[ "Namespaces", "namespaces.html", [
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[ "Namespace List", "namespaces.html", "namespaces_dup" ],
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[ "Namespace Members", "namespacemembers.html", [
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[ "All", "namespacemembers.html", null ],
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[ "Functions", "namespacemembers_func.html", null ],
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[ "Variables", "namespacemembers_vars.html", null ],
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[ "Typedefs", "namespacemembers_type.html", null ],
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[ "Enumerations", "namespacemembers_enum.html", null ],
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[ "Enumerator", "namespacemembers_eval.html", null ]
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] ]
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] ],
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[ "Concepts", "concepts.html", "concepts" ],
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[ "Classes", "annotated.html", [
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[ "Class List", "annotated.html", "annotated_dup" ],
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[ "Class Index", "classes.html", null ],
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[ "Class Hierarchy", "hierarchy.html", "hierarchy" ],
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[ "Class Members", "functions.html", [
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[ "All", "functions.html", "functions_dup" ],
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[ "Functions", "functions_func.html", "functions_func" ],
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[ "Variables", "functions_vars.html", "functions_vars" ],
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[ "Typedefs", "functions_type.html", null ],
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[ "Enumerations", "functions_enum.html", null ],
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[ "Enumerator", "functions_eval.html", null ],
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[ "Related Symbols", "functions_rela.html", null ]
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] ]
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] ],
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[ "Files", "files.html", [
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[ "File List", "files.html", "files_dup" ],
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[ "File Members", "globals.html", [
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[ "All", "globals.html", null ],
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[ "Functions", "globals_func.html", null ],
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[ "Variables", "globals_vars.html", null ],
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[ "Typedefs", "globals_type.html", null ],
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[ "Macros", "globals_defs.html", null ]
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] ]
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] ]
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] ]
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];
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var NAVTREEINDEX =
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[
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"____init_____8py.html",
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"classgridfire_1_1engine_1_1_dynamic_engine.html#a24103027a38e02d4342161164554d332",
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"classgridfire_1_1engine_1_1_graph_engine.html#af7dab9063bb92aac64b6dfa755074739",
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"classgridfire_1_1engine_1_1_reaction.html#a0c533797f18c2fe4945f1afb3fb06d5d",
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"classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8",
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"classgridfire_1_1policy_1_1_proton_proton_chain_policy.html",
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"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a7e6d50f866be9239ac620607741280cc",
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"classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96",
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"classgridfire_1_1trigger_1_1_or_trigger.html#a062af4f567dc48c088f1fcfb64cc79ec",
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"classgridfire_1_1utils_1_1_table.html#a51fb3691d40941c197f536c86cf9d59a",
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"generative_8h.html",
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"namespacegridfire_1_1utils.html#adfbe36ddda15b6e206d9726236d543ab",
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"structgridfire_1_1engine_1_1_priming_report.html#a73acbf3cbec59f5516e4c7aa3f6ca150",
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"structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a0b39f0d207181840efacb64417b492ae"
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];
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var SYNCONMSG = 'click to disable panel synchronization';
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var SYNCOFFMSG = 'click to enable panel synchronization'; |