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<div id="projectname">GridFire<span id="projectnumber"> 0.0.1a</span>
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<div id="projectbrief">General Purpose Nuclear Network</div>
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<a href="solver_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="preprocessor">#include "<a class="code" href="solver_8h.html">gridfire/solver/solver.h</a>"</span></div>
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<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span><span class="preprocessor">#include "<a class="code" href="engine__graph_8h.html">gridfire/engine/engine_graph.h</a>"</span></div>
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<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="preprocessor">#include "<a class="code" href="network_8h.html">gridfire/network.h</a>"</span></div>
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<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span> </div>
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<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="preprocessor">#include "<a class="code" href="logging_8h.html">gridfire/utils/logging.h</a>"</span></div>
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<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span> </div>
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<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="preprocessor">#include "fourdst/composition/atomicSpecies.h"</span></div>
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<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span><span class="preprocessor">#include "fourdst/composition/composition.h"</span></div>
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<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="preprocessor">#include "fourdst/config/config.h"</span></div>
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<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span> </div>
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<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="preprocessor">#include "Eigen/Dense"</span></div>
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<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span><span class="preprocessor">#include "unsupported/Eigen/NonLinearOptimization"</span></div>
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<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span> </div>
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<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span><span class="preprocessor">#include <boost/numeric/odeint.hpp></span></div>
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<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span> </div>
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<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span><span class="preprocessor">#include <vector></span></div>
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<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span><span class="preprocessor">#include <unordered_map></span></div>
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<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span><span class="preprocessor">#include <string></span></div>
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<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span><span class="preprocessor">#include <stdexcept></span></div>
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<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span><span class="preprocessor">#include <iomanip></span></div>
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<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span> </div>
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<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span><span class="preprocessor">#include "quill/LogMacros.h"</span></div>
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<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> </div>
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<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacegridfire_1_1solver.html">gridfire::solver</a> {</div>
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<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span> </div>
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<div class="foldopen" id="foldopen00026" data-start="{" data-end="}">
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<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a53b5496db7fed6f345dca39656bf9c0e"> 26</a></span> <a class="code hl_struct" href="structgridfire_1_1_net_out.html">NetOut</a> <a class="code hl_function" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a53b5496db7fed6f345dca39656bf9c0e">QSENetworkSolver::evaluate</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a> &netIn) {</div>
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<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// --- Use the policy to decide whether to update the view ---</span></div>
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<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> <span class="keywordflow">if</span> (<a class="code hl_function" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a35f1f6ede393f15c8bb8862f3f1c3b07">shouldUpdateView</a>(netIn)) {</div>
|
||
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"Solver update policy triggered, network view updating..."</span>);</div>
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||
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> <a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.update(netIn);</div>
|
||
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"Network view updated!"</span>);</div>
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||
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> </div>
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||
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f">m_lastSeenConditions</a> = netIn;</div>
|
||
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span> <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#ab07e68fd418ab058f890502d191b3f18">m_isViewInitialized</a> = <span class="keyword">true</span>;</div>
|
||
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span> }</div>
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||
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> <a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.generateJacobianMatrix(netIn.<a class="code hl_function" href="structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65">MolarAbundance</a>(), netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be">temperature</a> / 1e9, netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577">density</a>);</div>
|
||
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> <span class="keyword">using </span>state_type = boost::numeric::ublas::vector<double>;</div>
|
||
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> <span class="keyword">using namespace </span>boost::numeric::odeint;</div>
|
||
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> </div>
|
||
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> <a class="code hl_struct" href="structgridfire_1_1_net_out.html">NetOut</a> postIgnition = <a class="code hl_function" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#abaa567001df0007b714f474febae408b">initializeNetworkWithShortIgnition</a>(netIn);</div>
|
||
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> </div>
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||
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> <span class="keyword">constexpr</span> <span class="keywordtype">double</span> abundance_floor = 1.0e-30;</div>
|
||
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> std::vector<double>Y_sanitized_initial;</div>
|
||
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> Y_sanitized_initial.reserve(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.getNetworkSpecies().size());</div>
|
||
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span> </div>
|
||
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"Sanitizing initial abundances with a floor of {:0.3E}..."</span>, abundance_floor);</div>
|
||
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& species : <a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.getNetworkSpecies()) {</div>
|
||
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> <span class="keywordtype">double</span> molar_abundance = 0.0;</div>
|
||
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> <span class="keywordflow">if</span> (postIgnition.<a class="code hl_variable" href="structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a">composition</a>.contains(species)) {</div>
|
||
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> molar_abundance = postIgnition.<a class="code hl_variable" href="structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a">composition</a>.getMolarAbundance(std::string(species.name()));</div>
|
||
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> }</div>
|
||
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> </div>
|
||
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> <span class="keywordflow">if</span> (molar_abundance < abundance_floor) {</div>
|
||
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span> molar_abundance = abundance_floor;</div>
|
||
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> }</div>
|
||
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> Y_sanitized_initial.push_back(molar_abundance);</div>
|
||
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> }</div>
|
||
<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9 = netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be">temperature</a> / 1e9; <span class="comment">// Convert temperature from Kelvin to T9 (T9 = T / 1e9)</span></div>
|
||
<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho = netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577">density</a>; <span class="comment">// Density in g/cm^3</span></div>
|
||
<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span> </div>
|
||
<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"> 61</span> <span class="keyword">const</span> <span class="keyword">auto</span> indices = <a class="code hl_function" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a5d81ee5bfcfd5e77fe52201ba9e63719">packSpeciesTypeIndexVectors</a>(Y_sanitized_initial, T9, rho);</div>
|
||
<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"> 62</span> Eigen::VectorXd Y_QSE;</div>
|
||
<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"> 63</span> <span class="keywordflow">try</span> {</div>
|
||
<div class="line"><a id="l00064" name="l00064"></a><span class="lineno"> 64</span> Y_QSE = <a class="code hl_function" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a00d112f6087f6e3a93f4d40a519308d2">calculateSteadyStateAbundances</a>(Y_sanitized_initial, T9, rho, indices);</div>
|
||
<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"> 65</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"QSE Abundances: {}"</span>, [*<span class="keyword">this</span>](<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html">dynamicQSESpeciesIndices</a>& indices, <span class="keyword">const</span> Eigen::VectorXd& Y_QSE) -> std::string {</div>
|
||
<div class="line"><a id="l00066" name="l00066"></a><span class="lineno"> 66</span> std::stringstream ss;</div>
|
||
<div class="line"><a id="l00067" name="l00067"></a><span class="lineno"> 67</span> ss << std::scientific << std::setprecision(5);</div>
|
||
<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"> 68</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < indices.<a class="code hl_variable" href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2">QSESpeciesIndices</a>.size(); ++i) {</div>
|
||
<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span> ss << std::string(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.getNetworkSpecies()[indices.<a class="code hl_variable" href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2">QSESpeciesIndices</a>[i]].name()) + <span class="stringliteral">": "</span>;</div>
|
||
<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"> 70</span> ss << Y_QSE(i);</div>
|
||
<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"> 71</span> <span class="keywordflow">if</span> (i < indices.<a class="code hl_variable" href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2">QSESpeciesIndices</a>.size() - 2) {</div>
|
||
<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"> 72</span> ss << <span class="stringliteral">", "</span>;</div>
|
||
<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (i == indices.<a class="code hl_variable" href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2">QSESpeciesIndices</a>.size() - 2) {</div>
|
||
<div class="line"><a id="l00074" name="l00074"></a><span class="lineno"> 74</span> ss << <span class="stringliteral">", and "</span>;</div>
|
||
<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"> 75</span> }</div>
|
||
<div class="line"><a id="l00076" name="l00076"></a><span class="lineno"> 76</span> </div>
|
||
<div class="line"><a id="l00077" name="l00077"></a><span class="lineno"> 77</span> }</div>
|
||
<div class="line"><a id="l00078" name="l00078"></a><span class="lineno"> 78</span> <span class="keywordflow">return</span> ss.str();</div>
|
||
<div class="line"><a id="l00079" name="l00079"></a><span class="lineno"> 79</span> }(indices, Y_QSE));</div>
|
||
<div class="line"><a id="l00080" name="l00080"></a><span class="lineno"> 80</span> } <span class="keywordflow">catch</span> (<span class="keyword">const</span> std::runtime_error& e) {</div>
|
||
<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"> 81</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"Failed to calculate steady state abundances. Aborting QSE evaluation."</span>);</div>
|
||
<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span> <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>->flush_log();</div>
|
||
<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"> 83</span> <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Failed to calculate steady state abundances: "</span> + std::string(e.what()));</div>
|
||
<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"> 84</span> }</div>
|
||
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"> 85</span> </div>
|
||
<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"> 86</span> state_type YDynamic_ublas(indices.dynamicSpeciesIndices.size() + 1);</div>
|
||
<div class="line"><a id="l00087" name="l00087"></a><span class="lineno"> 87</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < indices.dynamicSpeciesIndices.size(); ++i) {</div>
|
||
<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"> 88</span> YDynamic_ublas(i) = Y_sanitized_initial[indices.dynamicSpeciesIndices[i]];</div>
|
||
<div class="line"><a id="l00089" name="l00089"></a><span class="lineno"> 89</span> }</div>
|
||
<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"> 90</span> YDynamic_ublas(indices.dynamicSpeciesIndices.size()) = 0.0; <span class="comment">// Placeholder for specific energy rate</span></div>
|
||
<div class="line"><a id="l00091" name="l00091"></a><span class="lineno"> 91</span> </div>
|
||
<div class="line"><a id="l00092" name="l00092"></a><span class="lineno"> 92</span> <span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html">RHSFunctor</a> rhs_functor(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>, indices.dynamicSpeciesIndices, indices.QSESpeciesIndices, Y_QSE, T9, rho);</div>
|
||
<div class="line"><a id="l00093" name="l00093"></a><span class="lineno"> 93</span> <span class="keyword">const</span> <span class="keyword">auto</span> stepper = make_controlled<runge_kutta_dopri5<state_type>>(1.0e-8, 1.0e-8);</div>
|
||
<div class="line"><a id="l00094" name="l00094"></a><span class="lineno"> 94</span> </div>
|
||
<div class="line"><a id="l00095" name="l00095"></a><span class="lineno"> 95</span> <span class="keywordtype">size_t</span> stepCount = integrate_adaptive(</div>
|
||
<div class="line"><a id="l00096" name="l00096"></a><span class="lineno"> 96</span> stepper,</div>
|
||
<div class="line"><a id="l00097" name="l00097"></a><span class="lineno"> 97</span> rhs_functor,</div>
|
||
<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"> 98</span> YDynamic_ublas,</div>
|
||
<div class="line"><a id="l00099" name="l00099"></a><span class="lineno"> 99</span> 0.0, <span class="comment">// Start time</span></div>
|
||
<div class="line"><a id="l00100" name="l00100"></a><span class="lineno"> 100</span> netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1">tMax</a>,</div>
|
||
<div class="line"><a id="l00101" name="l00101"></a><span class="lineno"> 101</span> netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a">dt0</a></div>
|
||
<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"> 102</span> );</div>
|
||
<div class="line"><a id="l00103" name="l00103"></a><span class="lineno"> 103</span> </div>
|
||
<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"> 104</span> std::vector<double> YFinal = Y_sanitized_initial;</div>
|
||
<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i <indices.dynamicSpeciesIndices.size(); ++i) {</div>
|
||
<div class="line"><a id="l00106" name="l00106"></a><span class="lineno"> 106</span> YFinal[indices.dynamicSpeciesIndices[i]] = YDynamic_ublas(i);</div>
|
||
<div class="line"><a id="l00107" name="l00107"></a><span class="lineno"> 107</span> }</div>
|
||
<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"> 108</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < indices.QSESpeciesIndices.size(); ++i) {</div>
|
||
<div class="line"><a id="l00109" name="l00109"></a><span class="lineno"> 109</span> YFinal[indices.QSESpeciesIndices[i]] = Y_QSE(i);</div>
|
||
<div class="line"><a id="l00110" name="l00110"></a><span class="lineno"> 110</span> }</div>
|
||
<div class="line"><a id="l00111" name="l00111"></a><span class="lineno"> 111</span> </div>
|
||
<div class="line"><a id="l00112" name="l00112"></a><span class="lineno"> 112</span> <span class="keyword">const</span> <span class="keywordtype">double</span> finalSpecificEnergyRate = YDynamic_ublas(indices.dynamicSpeciesIndices.size());</div>
|
||
<div class="line"><a id="l00113" name="l00113"></a><span class="lineno"> 113</span> </div>
|
||
<div class="line"><a id="l00114" name="l00114"></a><span class="lineno"> 114</span> <span class="comment">// --- Marshal output variables ---</span></div>
|
||
<div class="line"><a id="l00115" name="l00115"></a><span class="lineno"> 115</span> std::vector<std::string> speciesNames(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.getNetworkSpecies().size());</div>
|
||
<div class="line"><a id="l00116" name="l00116"></a><span class="lineno"> 116</span> std::vector<double> finalMassFractions(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.getNetworkSpecies().size());</div>
|
||
<div class="line"><a id="l00117" name="l00117"></a><span class="lineno"> 117</span> <span class="keywordtype">double</span> massFractionSum = 0.0;</div>
|
||
<div class="line"><a id="l00118" name="l00118"></a><span class="lineno"> 118</span> </div>
|
||
<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"> 119</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < speciesNames.size(); ++i) {</div>
|
||
<div class="line"><a id="l00120" name="l00120"></a><span class="lineno"> 120</span> <span class="keyword">const</span> <span class="keyword">auto</span>& species = <a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.getNetworkSpecies()[i];</div>
|
||
<div class="line"><a id="l00121" name="l00121"></a><span class="lineno"> 121</span> speciesNames[i] = species.name();</div>
|
||
<div class="line"><a id="l00122" name="l00122"></a><span class="lineno"> 122</span> finalMassFractions[i] = YFinal[i] * species.mass(); <span class="comment">// Convert from molar abundance to mass fraction</span></div>
|
||
<div class="line"><a id="l00123" name="l00123"></a><span class="lineno"> 123</span> massFractionSum += finalMassFractions[i];</div>
|
||
<div class="line"><a id="l00124" name="l00124"></a><span class="lineno"> 124</span> }</div>
|
||
<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span> <span class="keywordflow">for</span> (<span class="keyword">auto</span>& mf : finalMassFractions) {</div>
|
||
<div class="line"><a id="l00126" name="l00126"></a><span class="lineno"> 126</span> mf /= massFractionSum; <span class="comment">// Normalize to get mass fractions</span></div>
|
||
<div class="line"><a id="l00127" name="l00127"></a><span class="lineno"> 127</span> }</div>
|
||
<div class="line"><a id="l00128" name="l00128"></a><span class="lineno"> 128</span> </div>
|
||
<div class="line"><a id="l00129" name="l00129"></a><span class="lineno"> 129</span> fourdst::composition::Composition outputComposition(speciesNames, finalMassFractions);</div>
|
||
<div class="line"><a id="l00130" name="l00130"></a><span class="lineno"> 130</span> <a class="code hl_struct" href="structgridfire_1_1_net_out.html">NetOut</a> netOut;</div>
|
||
<div class="line"><a id="l00131" name="l00131"></a><span class="lineno"> 131</span> netOut.<a class="code hl_variable" href="structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a">composition</a> = outputComposition;</div>
|
||
<div class="line"><a id="l00132" name="l00132"></a><span class="lineno"> 132</span> netOut.<a class="code hl_variable" href="structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6">energy</a> = finalSpecificEnergyRate; <span class="comment">// Specific energy rate</span></div>
|
||
<div class="line"><a id="l00133" name="l00133"></a><span class="lineno"> 133</span> netOut.<a class="code hl_variable" href="structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6">num_steps</a> = stepCount;</div>
|
||
<div class="line"><a id="l00134" name="l00134"></a><span class="lineno"> 134</span> <span class="keywordflow">return</span> netOut;</div>
|
||
<div class="line"><a id="l00135" name="l00135"></a><span class="lineno"> 135</span> }</div>
|
||
</div>
|
||
<div class="line"><a id="l00136" name="l00136"></a><span class="lineno"> 136</span> </div>
|
||
<div class="foldopen" id="foldopen00137" data-start="{" data-end="}">
|
||
<div class="line"><a id="l00137" name="l00137"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a5d81ee5bfcfd5e77fe52201ba9e63719"> 137</a></span> <a class="code hl_struct" href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html">dynamicQSESpeciesIndices</a> <a class="code hl_function" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a5d81ee5bfcfd5e77fe52201ba9e63719">QSENetworkSolver::packSpeciesTypeIndexVectors</a>(</div>
|
||
<div class="line"><a id="l00138" name="l00138"></a><span class="lineno"> 138</span> <span class="keyword">const</span> std::vector<double>& Y,</div>
|
||
<div class="line"><a id="l00139" name="l00139"></a><span class="lineno"> 139</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||
<div class="line"><a id="l00140" name="l00140"></a><span class="lineno"> 140</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||
<div class="line"><a id="l00141" name="l00141"></a><span class="lineno"> 141</span> )<span class="keyword"> const </span>{</div>
|
||
<div class="line"><a id="l00142" name="l00142"></a><span class="lineno"> 142</span> <span class="keyword">constexpr</span> <span class="keywordtype">double</span> timescaleCutoff = 1.0e-5;</div>
|
||
<div class="line"><a id="l00143" name="l00143"></a><span class="lineno"> 143</span> <span class="keyword">constexpr</span> <span class="keywordtype">double</span> abundanceCutoff = 1.0e-15;</div>
|
||
<div class="line"><a id="l00144" name="l00144"></a><span class="lineno"> 144</span> </div>
|
||
<div class="line"><a id="l00145" name="l00145"></a><span class="lineno"> 145</span> LOG_INFO(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"Partitioning species using T9={:0.2f} and ρ={:0.2e}"</span>, T9, rho);</div>
|
||
<div class="line"><a id="l00146" name="l00146"></a><span class="lineno"> 146</span> LOG_INFO(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"Timescale Cutoff: {:.1e} s, Abundance Cutoff: {:.1e}"</span>, timescaleCutoff, abundanceCutoff);</div>
|
||
<div class="line"><a id="l00147" name="l00147"></a><span class="lineno"> 147</span> </div>
|
||
<div class="line"><a id="l00148" name="l00148"></a><span class="lineno"> 148</span> std::vector<size_t>dynamicSpeciesIndices; <span class="comment">// Slow species that are not in QSE</span></div>
|
||
<div class="line"><a id="l00149" name="l00149"></a><span class="lineno"> 149</span> std::vector<size_t>QSESpeciesIndices; <span class="comment">// Fast species that are in QSE</span></div>
|
||
<div class="line"><a id="l00150" name="l00150"></a><span class="lineno"> 150</span> </div>
|
||
<div class="line"><a id="l00151" name="l00151"></a><span class="lineno"> 151</span> std::unordered_map<fourdst::atomic::Species, double> speciesTimescale = <a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.getSpeciesTimescales(Y, T9, rho);</div>
|
||
<div class="line"><a id="l00152" name="l00152"></a><span class="lineno"> 152</span> </div>
|
||
<div class="line"><a id="l00153" name="l00153"></a><span class="lineno"> 153</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < <a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.getNetworkSpecies().size(); ++i) {</div>
|
||
<div class="line"><a id="l00154" name="l00154"></a><span class="lineno"> 154</span> <span class="keyword">const</span> <span class="keyword">auto</span>& species = <a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.getNetworkSpecies()[i];</div>
|
||
<div class="line"><a id="l00155" name="l00155"></a><span class="lineno"> 155</span> <span class="keyword">const</span> <span class="keywordtype">double</span> network_timescale = speciesTimescale.at(species);</div>
|
||
<div class="line"><a id="l00156" name="l00156"></a><span class="lineno"> 156</span> <span class="keyword">const</span> <span class="keywordtype">double</span> abundance = Y[i];</div>
|
||
<div class="line"><a id="l00157" name="l00157"></a><span class="lineno"> 157</span> </div>
|
||
<div class="line"><a id="l00158" name="l00158"></a><span class="lineno"> 158</span> <span class="keywordtype">double</span> decay_timescale = std::numeric_limits<double>::infinity();</div>
|
||
<div class="line"><a id="l00159" name="l00159"></a><span class="lineno"> 159</span> <span class="keyword">const</span> <span class="keywordtype">double</span> half_life = species.halfLife();</div>
|
||
<div class="line"><a id="l00160" name="l00160"></a><span class="lineno"> 160</span> <span class="keywordflow">if</span> (half_life > 0 && !std::isinf(half_life)) {</div>
|
||
<div class="line"><a id="l00161" name="l00161"></a><span class="lineno"> 161</span> <span class="keyword">constexpr</span> <span class="keywordtype">double</span> LN2 = 0.69314718056;</div>
|
||
<div class="line"><a id="l00162" name="l00162"></a><span class="lineno"> 162</span> decay_timescale = half_life / LN2;</div>
|
||
<div class="line"><a id="l00163" name="l00163"></a><span class="lineno"> 163</span> }</div>
|
||
<div class="line"><a id="l00164" name="l00164"></a><span class="lineno"> 164</span> </div>
|
||
<div class="line"><a id="l00165" name="l00165"></a><span class="lineno"> 165</span> <span class="keyword">const</span> <span class="keywordtype">double</span> final_timescale = std::min(network_timescale, decay_timescale);</div>
|
||
<div class="line"><a id="l00166" name="l00166"></a><span class="lineno"> 166</span> </div>
|
||
<div class="line"><a id="l00167" name="l00167"></a><span class="lineno"> 167</span> <span class="keywordflow">if</span> (std::isinf(final_timescale) || abundance < abundanceCutoff || final_timescale <= timescaleCutoff) {</div>
|
||
<div class="line"><a id="l00168" name="l00168"></a><span class="lineno"> 168</span> QSESpeciesIndices.push_back(i);</div>
|
||
<div class="line"><a id="l00169" name="l00169"></a><span class="lineno"> 169</span> } <span class="keywordflow">else</span> {</div>
|
||
<div class="line"><a id="l00170" name="l00170"></a><span class="lineno"> 170</span> dynamicSpeciesIndices.push_back(i);</div>
|
||
<div class="line"><a id="l00171" name="l00171"></a><span class="lineno"> 171</span> }</div>
|
||
<div class="line"><a id="l00172" name="l00172"></a><span class="lineno"> 172</span> }</div>
|
||
<div class="line"><a id="l00173" name="l00173"></a><span class="lineno"> 173</span> LOG_INFO(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"Partitioning complete. Dynamical species: {}, QSE species: {}."</span>, dynamicSpeciesIndices.size(), QSESpeciesIndices.size());</div>
|
||
<div class="line"><a id="l00174" name="l00174"></a><span class="lineno"> 174</span> LOG_INFO(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"Dynamic species: {}"</span>, [dynamicSpeciesIndices](<span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& engine_wrapper) -> std::string {</div>
|
||
<div class="line"><a id="l00175" name="l00175"></a><span class="lineno"> 175</span> std::string result;</div>
|
||
<div class="line"><a id="l00176" name="l00176"></a><span class="lineno"> 176</span> <span class="keywordtype">int</span> count = 0;</div>
|
||
<div class="line"><a id="l00177" name="l00177"></a><span class="lineno"> 177</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& i : dynamicSpeciesIndices) {</div>
|
||
<div class="line"><a id="l00178" name="l00178"></a><span class="lineno"> 178</span> result += std::string(engine_wrapper.<a class="code hl_function" href="classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3">getNetworkSpecies</a>()[i].name());</div>
|
||
<div class="line"><a id="l00179" name="l00179"></a><span class="lineno"> 179</span> <span class="keywordflow">if</span> (count < dynamicSpeciesIndices.size() - 2) {</div>
|
||
<div class="line"><a id="l00180" name="l00180"></a><span class="lineno"> 180</span> result += <span class="stringliteral">", "</span>;</div>
|
||
<div class="line"><a id="l00181" name="l00181"></a><span class="lineno"> 181</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (count == dynamicSpeciesIndices.size() - 2) {</div>
|
||
<div class="line"><a id="l00182" name="l00182"></a><span class="lineno"> 182</span> result += <span class="stringliteral">" and "</span>;</div>
|
||
<div class="line"><a id="l00183" name="l00183"></a><span class="lineno"> 183</span> }</div>
|
||
<div class="line"><a id="l00184" name="l00184"></a><span class="lineno"> 184</span> count++;</div>
|
||
<div class="line"><a id="l00185" name="l00185"></a><span class="lineno"> 185</span> }</div>
|
||
<div class="line"><a id="l00186" name="l00186"></a><span class="lineno"> 186</span> <span class="keywordflow">return</span> result;</div>
|
||
<div class="line"><a id="l00187" name="l00187"></a><span class="lineno"> 187</span> }(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>));</div>
|
||
<div class="line"><a id="l00188" name="l00188"></a><span class="lineno"> 188</span> LOG_INFO(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"QSE species: {}"</span>, [QSESpeciesIndices](<span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& engine_wrapper) -> std::string {</div>
|
||
<div class="line"><a id="l00189" name="l00189"></a><span class="lineno"> 189</span> std::string result;</div>
|
||
<div class="line"><a id="l00190" name="l00190"></a><span class="lineno"> 190</span> <span class="keywordtype">int</span> count = 0;</div>
|
||
<div class="line"><a id="l00191" name="l00191"></a><span class="lineno"> 191</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& i : QSESpeciesIndices) {</div>
|
||
<div class="line"><a id="l00192" name="l00192"></a><span class="lineno"> 192</span> result += std::string(engine_wrapper.<a class="code hl_function" href="classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3">getNetworkSpecies</a>()[i].name());</div>
|
||
<div class="line"><a id="l00193" name="l00193"></a><span class="lineno"> 193</span> <span class="keywordflow">if</span> (count < QSESpeciesIndices.size() - 2) {</div>
|
||
<div class="line"><a id="l00194" name="l00194"></a><span class="lineno"> 194</span> result += <span class="stringliteral">", "</span>;</div>
|
||
<div class="line"><a id="l00195" name="l00195"></a><span class="lineno"> 195</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (count == QSESpeciesIndices.size() - 2) {</div>
|
||
<div class="line"><a id="l00196" name="l00196"></a><span class="lineno"> 196</span> result += <span class="stringliteral">" and "</span>;</div>
|
||
<div class="line"><a id="l00197" name="l00197"></a><span class="lineno"> 197</span> }</div>
|
||
<div class="line"><a id="l00198" name="l00198"></a><span class="lineno"> 198</span> count++;</div>
|
||
<div class="line"><a id="l00199" name="l00199"></a><span class="lineno"> 199</span> }</div>
|
||
<div class="line"><a id="l00200" name="l00200"></a><span class="lineno"> 200</span> <span class="keywordflow">return</span> result;</div>
|
||
<div class="line"><a id="l00201" name="l00201"></a><span class="lineno"> 201</span> }(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>));</div>
|
||
<div class="line"><a id="l00202" name="l00202"></a><span class="lineno"> 202</span> <span class="keywordflow">return</span> {dynamicSpeciesIndices, QSESpeciesIndices};</div>
|
||
<div class="line"><a id="l00203" name="l00203"></a><span class="lineno"> 203</span> }</div>
|
||
</div>
|
||
<div class="line"><a id="l00204" name="l00204"></a><span class="lineno"> 204</span> </div>
|
||
<div class="foldopen" id="foldopen00205" data-start="{" data-end="}">
|
||
<div class="line"><a id="l00205" name="l00205"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a00d112f6087f6e3a93f4d40a519308d2"> 205</a></span> Eigen::VectorXd <a class="code hl_function" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a00d112f6087f6e3a93f4d40a519308d2">QSENetworkSolver::calculateSteadyStateAbundances</a>(</div>
|
||
<div class="line"><a id="l00206" name="l00206"></a><span class="lineno"> 206</span> <span class="keyword">const</span> std::vector<double> &Y,</div>
|
||
<div class="line"><a id="l00207" name="l00207"></a><span class="lineno"> 207</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||
<div class="line"><a id="l00208" name="l00208"></a><span class="lineno"> 208</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho,</div>
|
||
<div class="line"><a id="l00209" name="l00209"></a><span class="lineno"> 209</span> <span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html">dynamicQSESpeciesIndices</a> &indices</div>
|
||
<div class="line"><a id="l00210" name="l00210"></a><span class="lineno"> 210</span> )<span class="keyword"> const </span>{</div>
|
||
<div class="line"><a id="l00211" name="l00211"></a><span class="lineno"> 211</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"Calculating steady state abundances for QSE species..."</span>);</div>
|
||
<div class="line"><a id="l00212" name="l00212"></a><span class="lineno"> 212</span> </div>
|
||
<div class="line"><a id="l00213" name="l00213"></a><span class="lineno"> 213</span> <span class="keywordflow">if</span> (indices.<a class="code hl_variable" href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2">QSESpeciesIndices</a>.empty()) {</div>
|
||
<div class="line"><a id="l00214" name="l00214"></a><span class="lineno"> 214</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"No QSE species to solve for."</span>);</div>
|
||
<div class="line"><a id="l00215" name="l00215"></a><span class="lineno"> 215</span> <span class="keywordflow">return</span> Eigen::VectorXd(0);</div>
|
||
<div class="line"><a id="l00216" name="l00216"></a><span class="lineno"> 216</span> }</div>
|
||
<div class="line"><a id="l00217" name="l00217"></a><span class="lineno"> 217</span> <span class="comment">// Use the EigenFunctor with Eigen's nonlinear solver</span></div>
|
||
<div class="line"><a id="l00218" name="l00218"></a><span class="lineno"> 218</span> <a class="code hl_struct" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html">EigenFunctor<double></a> functor(</div>
|
||
<div class="line"><a id="l00219" name="l00219"></a><span class="lineno"> 219</span> <a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>,</div>
|
||
<div class="line"><a id="l00220" name="l00220"></a><span class="lineno"> 220</span> Y,</div>
|
||
<div class="line"><a id="l00221" name="l00221"></a><span class="lineno"> 221</span> indices.<a class="code hl_variable" href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#ac6e0419abdd3c78b32e34c16c0543157">dynamicSpeciesIndices</a>,</div>
|
||
<div class="line"><a id="l00222" name="l00222"></a><span class="lineno"> 222</span> indices.<a class="code hl_variable" href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2">QSESpeciesIndices</a>,</div>
|
||
<div class="line"><a id="l00223" name="l00223"></a><span class="lineno"> 223</span> T9,</div>
|
||
<div class="line"><a id="l00224" name="l00224"></a><span class="lineno"> 224</span> rho</div>
|
||
<div class="line"><a id="l00225" name="l00225"></a><span class="lineno"> 225</span> );</div>
|
||
<div class="line"><a id="l00226" name="l00226"></a><span class="lineno"> 226</span> </div>
|
||
<div class="line"><a id="l00227" name="l00227"></a><span class="lineno"> 227</span> Eigen::VectorXd v_qse_log_initial(indices.<a class="code hl_variable" href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2">QSESpeciesIndices</a>.size());</div>
|
||
<div class="line"><a id="l00228" name="l00228"></a><span class="lineno"> 228</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < indices.<a class="code hl_variable" href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2">QSESpeciesIndices</a>.size(); ++i) {</div>
|
||
<div class="line"><a id="l00229" name="l00229"></a><span class="lineno"> 229</span> v_qse_log_initial(i) = std::log(std::max(Y[indices.<a class="code hl_variable" href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2">QSESpeciesIndices</a>[i]], 1e-99));</div>
|
||
<div class="line"><a id="l00230" name="l00230"></a><span class="lineno"> 230</span> }</div>
|
||
<div class="line"><a id="l00231" name="l00231"></a><span class="lineno"> 231</span> </div>
|
||
<div class="line"><a id="l00232" name="l00232"></a><span class="lineno"> 232</span> <span class="keyword">const</span> <span class="keyword">static</span> std::unordered_map<Eigen::LevenbergMarquardtSpace::Status, const char*> statusMessages = {</div>
|
||
<div class="line"><a id="l00233" name="l00233"></a><span class="lineno"> 233</span> {Eigen::LevenbergMarquardtSpace::NotStarted, <span class="stringliteral">"Not started"</span>},</div>
|
||
<div class="line"><a id="l00234" name="l00234"></a><span class="lineno"> 234</span> {Eigen::LevenbergMarquardtSpace::Running, <span class="stringliteral">"Running"</span>},</div>
|
||
<div class="line"><a id="l00235" name="l00235"></a><span class="lineno"> 235</span> {Eigen::LevenbergMarquardtSpace::ImproperInputParameters, <span class="stringliteral">"Improper input parameters"</span>},</div>
|
||
<div class="line"><a id="l00236" name="l00236"></a><span class="lineno"> 236</span> {Eigen::LevenbergMarquardtSpace::RelativeReductionTooSmall, <span class="stringliteral">"Relative reduction too small"</span>},</div>
|
||
<div class="line"><a id="l00237" name="l00237"></a><span class="lineno"> 237</span> {Eigen::LevenbergMarquardtSpace::RelativeErrorTooSmall, <span class="stringliteral">"Relative error too small"</span>},</div>
|
||
<div class="line"><a id="l00238" name="l00238"></a><span class="lineno"> 238</span> {Eigen::LevenbergMarquardtSpace::RelativeErrorAndReductionTooSmall, <span class="stringliteral">"Relative error and reduction too small"</span>},</div>
|
||
<div class="line"><a id="l00239" name="l00239"></a><span class="lineno"> 239</span> {Eigen::LevenbergMarquardtSpace::CosinusTooSmall, <span class="stringliteral">"Cosine too small"</span>},</div>
|
||
<div class="line"><a id="l00240" name="l00240"></a><span class="lineno"> 240</span> {Eigen::LevenbergMarquardtSpace::TooManyFunctionEvaluation, <span class="stringliteral">"Too many function evaluations"</span>},</div>
|
||
<div class="line"><a id="l00241" name="l00241"></a><span class="lineno"> 241</span> {Eigen::LevenbergMarquardtSpace::FtolTooSmall, <span class="stringliteral">"Function tolerance too small"</span>},</div>
|
||
<div class="line"><a id="l00242" name="l00242"></a><span class="lineno"> 242</span> {Eigen::LevenbergMarquardtSpace::XtolTooSmall, <span class="stringliteral">"X tolerance too small"</span>},</div>
|
||
<div class="line"><a id="l00243" name="l00243"></a><span class="lineno"> 243</span> {Eigen::LevenbergMarquardtSpace::GtolTooSmall, <span class="stringliteral">"Gradient tolerance too small"</span>},</div>
|
||
<div class="line"><a id="l00244" name="l00244"></a><span class="lineno"> 244</span> {Eigen::LevenbergMarquardtSpace::UserAsked, <span class="stringliteral">"User asked to stop"</span>}</div>
|
||
<div class="line"><a id="l00245" name="l00245"></a><span class="lineno"> 245</span> };</div>
|
||
<div class="line"><a id="l00246" name="l00246"></a><span class="lineno"> 246</span> </div>
|
||
<div class="line"><a id="l00247" name="l00247"></a><span class="lineno"> 247</span> Eigen::LevenbergMarquardt lm(functor);</div>
|
||
<div class="line"><a id="l00248" name="l00248"></a><span class="lineno"> 248</span> <span class="keyword">const</span> Eigen::LevenbergMarquardtSpace::Status info = lm.minimize(v_qse_log_initial);</div>
|
||
<div class="line"><a id="l00249" name="l00249"></a><span class="lineno"> 249</span> </div>
|
||
<div class="line"><a id="l00250" name="l00250"></a><span class="lineno"> 250</span> <span class="keywordflow">if</span> (info <= 0 || info >= 4) {</div>
|
||
<div class="line"><a id="l00251" name="l00251"></a><span class="lineno"> 251</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"QSE species minimization failed with status: {} ({})"</span>,</div>
|
||
<div class="line"><a id="l00252" name="l00252"></a><span class="lineno"> 252</span> <span class="keyword">static_cast<</span><span class="keywordtype">int</span><span class="keyword">></span>(info), statusMessages.at(info));</div>
|
||
<div class="line"><a id="l00253" name="l00253"></a><span class="lineno"> 253</span> <span class="keywordflow">throw</span> std::runtime_error(</div>
|
||
<div class="line"><a id="l00254" name="l00254"></a><span class="lineno"> 254</span> <span class="stringliteral">"QSE species minimization failed with status: "</span> + std::to_string(<span class="keyword">static_cast<</span><span class="keywordtype">int</span><span class="keyword">></span>(info)) +</div>
|
||
<div class="line"><a id="l00255" name="l00255"></a><span class="lineno"> 255</span> <span class="stringliteral">" ("</span> + std::string(statusMessages.at(info)) + <span class="stringliteral">")"</span></div>
|
||
<div class="line"><a id="l00256" name="l00256"></a><span class="lineno"> 256</span> );</div>
|
||
<div class="line"><a id="l00257" name="l00257"></a><span class="lineno"> 257</span> }</div>
|
||
<div class="line"><a id="l00258" name="l00258"></a><span class="lineno"> 258</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"QSE species minimization completed successfully with status: {} ({})"</span>,</div>
|
||
<div class="line"><a id="l00259" name="l00259"></a><span class="lineno"> 259</span> <span class="keyword">static_cast<</span><span class="keywordtype">int</span><span class="keyword">></span>(info), statusMessages.at(info));</div>
|
||
<div class="line"><a id="l00260" name="l00260"></a><span class="lineno"> 260</span> <span class="keywordflow">return</span> v_qse_log_initial.array().exp();</div>
|
||
<div class="line"><a id="l00261" name="l00261"></a><span class="lineno"> 261</span> </div>
|
||
<div class="line"><a id="l00262" name="l00262"></a><span class="lineno"> 262</span> }</div>
|
||
</div>
|
||
<div class="line"><a id="l00263" name="l00263"></a><span class="lineno"> 263</span> </div>
|
||
<div class="foldopen" id="foldopen00264" data-start="{" data-end="}">
|
||
<div class="line"><a id="l00264" name="l00264"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#abaa567001df0007b714f474febae408b"> 264</a></span> <a class="code hl_struct" href="structgridfire_1_1_net_out.html">NetOut</a> <a class="code hl_function" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#abaa567001df0007b714f474febae408b">QSENetworkSolver::initializeNetworkWithShortIgnition</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a> &netIn)<span class="keyword"> const </span>{</div>
|
||
<div class="line"><a id="l00265" name="l00265"></a><span class="lineno"> 265</span> <span class="keyword">const</span> <span class="keyword">auto</span> ignitionTemperature = <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1">m_config</a>.get<<span class="keywordtype">double</span>>(</div>
|
||
<div class="line"><a id="l00266" name="l00266"></a><span class="lineno"> 266</span> <span class="stringliteral">"gridfire:solver:QSE:ignition:temperature"</span>,</div>
|
||
<div class="line"><a id="l00267" name="l00267"></a><span class="lineno"> 267</span> 2e8</div>
|
||
<div class="line"><a id="l00268" name="l00268"></a><span class="lineno"> 268</span> ); <span class="comment">// 0.2 GK</span></div>
|
||
<div class="line"><a id="l00269" name="l00269"></a><span class="lineno"> 269</span> <span class="keyword">const</span> <span class="keyword">auto</span> ignitionDensity = <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1">m_config</a>.get<<span class="keywordtype">double</span>>(</div>
|
||
<div class="line"><a id="l00270" name="l00270"></a><span class="lineno"> 270</span> <span class="stringliteral">"gridfire:solver:QSE:ignition:density"</span>,</div>
|
||
<div class="line"><a id="l00271" name="l00271"></a><span class="lineno"> 271</span> 1e6</div>
|
||
<div class="line"><a id="l00272" name="l00272"></a><span class="lineno"> 272</span> ); <span class="comment">// 1e6 g/cm^3</span></div>
|
||
<div class="line"><a id="l00273" name="l00273"></a><span class="lineno"> 273</span> <span class="keyword">const</span> <span class="keyword">auto</span> ignitionTime = <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1">m_config</a>.get<<span class="keywordtype">double</span>>(</div>
|
||
<div class="line"><a id="l00274" name="l00274"></a><span class="lineno"> 274</span> <span class="stringliteral">"gridfire:solver:QSE:ignition:tMax"</span>,</div>
|
||
<div class="line"><a id="l00275" name="l00275"></a><span class="lineno"> 275</span> 1e-7</div>
|
||
<div class="line"><a id="l00276" name="l00276"></a><span class="lineno"> 276</span> ); <span class="comment">// 0.1 μs</span></div>
|
||
<div class="line"><a id="l00277" name="l00277"></a><span class="lineno"> 277</span> <span class="keyword">const</span> <span class="keyword">auto</span> ignitionStepSize = <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1">m_config</a>.get<<span class="keywordtype">double</span>>(</div>
|
||
<div class="line"><a id="l00278" name="l00278"></a><span class="lineno"> 278</span> <span class="stringliteral">"gridfire:solver:QSE:ignition:dt0"</span>,</div>
|
||
<div class="line"><a id="l00279" name="l00279"></a><span class="lineno"> 279</span> 1e-15</div>
|
||
<div class="line"><a id="l00280" name="l00280"></a><span class="lineno"> 280</span> ); <span class="comment">// 1e-15 seconds</span></div>
|
||
<div class="line"><a id="l00281" name="l00281"></a><span class="lineno"> 281</span> </div>
|
||
<div class="line"><a id="l00282" name="l00282"></a><span class="lineno"> 282</span> LOG_INFO(</div>
|
||
<div class="line"><a id="l00283" name="l00283"></a><span class="lineno"> 283</span> <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>,</div>
|
||
<div class="line"><a id="l00284" name="l00284"></a><span class="lineno"> 284</span> <span class="stringliteral">"Igniting network with T={:<5.3E}, ρ={:<5.3E}, tMax={:<5.3E}, dt0={:<5.3E}..."</span>,</div>
|
||
<div class="line"><a id="l00285" name="l00285"></a><span class="lineno"> 285</span> ignitionTemperature,</div>
|
||
<div class="line"><a id="l00286" name="l00286"></a><span class="lineno"> 286</span> ignitionDensity,</div>
|
||
<div class="line"><a id="l00287" name="l00287"></a><span class="lineno"> 287</span> ignitionTime,</div>
|
||
<div class="line"><a id="l00288" name="l00288"></a><span class="lineno"> 288</span> ignitionStepSize</div>
|
||
<div class="line"><a id="l00289" name="l00289"></a><span class="lineno"> 289</span> );</div>
|
||
<div class="line"><a id="l00290" name="l00290"></a><span class="lineno"> 290</span> </div>
|
||
<div class="line"><a id="l00291" name="l00291"></a><span class="lineno"> 291</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a> preIgnition = netIn;</div>
|
||
<div class="line"><a id="l00292" name="l00292"></a><span class="lineno"> 292</span> preIgnition.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be">temperature</a> = ignitionTemperature;</div>
|
||
<div class="line"><a id="l00293" name="l00293"></a><span class="lineno"> 293</span> preIgnition.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577">density</a> = ignitionDensity;</div>
|
||
<div class="line"><a id="l00294" name="l00294"></a><span class="lineno"> 294</span> preIgnition.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1">tMax</a> = ignitionTime;</div>
|
||
<div class="line"><a id="l00295" name="l00295"></a><span class="lineno"> 295</span> preIgnition.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a">dt0</a> = ignitionStepSize;</div>
|
||
<div class="line"><a id="l00296" name="l00296"></a><span class="lineno"> 296</span> </div>
|
||
<div class="line"><a id="l00297" name="l00297"></a><span class="lineno"> 297</span> <span class="keyword">const</span> <span class="keyword">auto</span> prevScreeningModel = <a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.getScreeningModel();</div>
|
||
<div class="line"><a id="l00298" name="l00298"></a><span class="lineno"> 298</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"Setting screening model to BARE for high temperature and density ignition."</span>);</div>
|
||
<div class="line"><a id="l00299" name="l00299"></a><span class="lineno"> 299</span> <a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.setScreeningModel(<a class="code hl_enumvalue" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71">screening::ScreeningType::BARE</a>);</div>
|
||
<div class="line"><a id="l00300" name="l00300"></a><span class="lineno"> 300</span> <a class="code hl_class" href="classgridfire_1_1solver_1_1_direct_network_solver.html">DirectNetworkSolver</a> ignitionSolver(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>);</div>
|
||
<div class="line"><a id="l00301" name="l00301"></a><span class="lineno"> 301</span> <a class="code hl_struct" href="structgridfire_1_1_net_out.html">NetOut</a> postIgnition = ignitionSolver.<a class="code hl_function" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a">evaluate</a>(preIgnition);</div>
|
||
<div class="line"><a id="l00302" name="l00302"></a><span class="lineno"> 302</span> LOG_INFO(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"Network ignition completed in {} steps."</span>, postIgnition.<a class="code hl_variable" href="structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6">num_steps</a>);</div>
|
||
<div class="line"><a id="l00303" name="l00303"></a><span class="lineno"> 303</span> <a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.setScreeningModel(prevScreeningModel);</div>
|
||
<div class="line"><a id="l00304" name="l00304"></a><span class="lineno"> 304</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"Restoring previous screening model: {}"</span>, <span class="keyword">static_cast<</span><span class="keywordtype">int</span><span class="keyword">></span>(prevScreeningModel));</div>
|
||
<div class="line"><a id="l00305" name="l00305"></a><span class="lineno"> 305</span> <span class="keywordflow">return</span> postIgnition;</div>
|
||
<div class="line"><a id="l00306" name="l00306"></a><span class="lineno"> 306</span> }</div>
|
||
</div>
|
||
<div class="line"><a id="l00307" name="l00307"></a><span class="lineno"> 307</span> </div>
|
||
<div class="foldopen" id="foldopen00308" data-start="{" data-end="}">
|
||
<div class="line"><a id="l00308" name="l00308"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a35f1f6ede393f15c8bb8862f3f1c3b07"> 308</a></span> <span class="keywordtype">bool</span> <a class="code hl_function" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a35f1f6ede393f15c8bb8862f3f1c3b07">QSENetworkSolver::shouldUpdateView</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a> &conditions)<span class="keyword"> const </span>{</div>
|
||
<div class="line"><a id="l00309" name="l00309"></a><span class="lineno"> 309</span> <span class="comment">// Policy 1: If the view has never been initialized, we must update.</span></div>
|
||
<div class="line"><a id="l00310" name="l00310"></a><span class="lineno"> 310</span> <span class="keywordflow">if</span> (!<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#ab07e68fd418ab058f890502d191b3f18">m_isViewInitialized</a>) {</div>
|
||
<div class="line"><a id="l00311" name="l00311"></a><span class="lineno"> 311</span> <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
|
||
<div class="line"><a id="l00312" name="l00312"></a><span class="lineno"> 312</span> }</div>
|
||
<div class="line"><a id="l00313" name="l00313"></a><span class="lineno"> 313</span> </div>
|
||
<div class="line"><a id="l00314" name="l00314"></a><span class="lineno"> 314</span> <span class="comment">// Policy 2: Check for significant relative change in temperature.</span></div>
|
||
<div class="line"><a id="l00315" name="l00315"></a><span class="lineno"> 315</span> <span class="comment">// Reaction rates are exponentially sensitive to temperature, so we use a tight threshold.</span></div>
|
||
<div class="line"><a id="l00316" name="l00316"></a><span class="lineno"> 316</span> <span class="keyword">const</span> <span class="keywordtype">double</span> temp_threshold = <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1">m_config</a>.get<<span class="keywordtype">double</span>>(<span class="stringliteral">"gridfire:solver:policy:temp_threshold"</span>, 0.05); <span class="comment">// 5%</span></div>
|
||
<div class="line"><a id="l00317" name="l00317"></a><span class="lineno"> 317</span> <span class="keyword">const</span> <span class="keywordtype">double</span> temp_relative_change = std::abs(conditions.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be">temperature</a> - <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f">m_lastSeenConditions</a>.temperature) / <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f">m_lastSeenConditions</a>.temperature;</div>
|
||
<div class="line"><a id="l00318" name="l00318"></a><span class="lineno"> 318</span> <span class="keywordflow">if</span> (temp_relative_change > temp_threshold) {</div>
|
||
<div class="line"><a id="l00319" name="l00319"></a><span class="lineno"> 319</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"Temperature changed by {:.1f}%, triggering view update."</span>, temp_relative_change * 100);</div>
|
||
<div class="line"><a id="l00320" name="l00320"></a><span class="lineno"> 320</span> <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
|
||
<div class="line"><a id="l00321" name="l00321"></a><span class="lineno"> 321</span> }</div>
|
||
<div class="line"><a id="l00322" name="l00322"></a><span class="lineno"> 322</span> </div>
|
||
<div class="line"><a id="l00323" name="l00323"></a><span class="lineno"> 323</span> <span class="comment">// Policy 3: Check for significant relative change in density.</span></div>
|
||
<div class="line"><a id="l00324" name="l00324"></a><span class="lineno"> 324</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho_threshold = <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1">m_config</a>.get<<span class="keywordtype">double</span>>(<span class="stringliteral">"gridfire:solver:policy:rho_threshold"</span>, 0.10); <span class="comment">// 10%</span></div>
|
||
<div class="line"><a id="l00325" name="l00325"></a><span class="lineno"> 325</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho_relative_change = std::abs(conditions.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577">density</a> - <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f">m_lastSeenConditions</a>.density) / <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f">m_lastSeenConditions</a>.density;</div>
|
||
<div class="line"><a id="l00326" name="l00326"></a><span class="lineno"> 326</span> <span class="keywordflow">if</span> (rho_relative_change > rho_threshold) {</div>
|
||
<div class="line"><a id="l00327" name="l00327"></a><span class="lineno"> 327</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"Density changed by {:.1f}%, triggering view update."</span>, rho_relative_change * 100);</div>
|
||
<div class="line"><a id="l00328" name="l00328"></a><span class="lineno"> 328</span> <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
|
||
<div class="line"><a id="l00329" name="l00329"></a><span class="lineno"> 329</span> }</div>
|
||
<div class="line"><a id="l00330" name="l00330"></a><span class="lineno"> 330</span> </div>
|
||
<div class="line"><a id="l00331" name="l00331"></a><span class="lineno"> 331</span> <span class="comment">// Policy 4: Check for fuel depletion.</span></div>
|
||
<div class="line"><a id="l00332" name="l00332"></a><span class="lineno"> 332</span> <span class="comment">// If a primary fuel source changes significantly, the network structure may change.</span></div>
|
||
<div class="line"><a id="l00333" name="l00333"></a><span class="lineno"> 333</span> <span class="keyword">const</span> <span class="keywordtype">double</span> fuel_threshold = <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1">m_config</a>.get<<span class="keywordtype">double</span>>(<span class="stringliteral">"gridfire:solver:policy:fuel_threshold"</span>, 0.15); <span class="comment">// 15%</span></div>
|
||
<div class="line"><a id="l00334" name="l00334"></a><span class="lineno"> 334</span> </div>
|
||
<div class="line"><a id="l00335" name="l00335"></a><span class="lineno"> 335</span> <span class="comment">// Example: Check hydrogen abundance</span></div>
|
||
<div class="line"><a id="l00336" name="l00336"></a><span class="lineno"> 336</span> <span class="keyword">const</span> <span class="keywordtype">double</span> h1_old = <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f">m_lastSeenConditions</a>.composition.getMassFraction(<span class="stringliteral">"H-1"</span>);</div>
|
||
<div class="line"><a id="l00337" name="l00337"></a><span class="lineno"> 337</span> <span class="keyword">const</span> <span class="keywordtype">double</span> h1_new = conditions.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">composition</a>.getMassFraction(<span class="stringliteral">"H-1"</span>);</div>
|
||
<div class="line"><a id="l00338" name="l00338"></a><span class="lineno"> 338</span> <span class="keywordflow">if</span> (h1_old > 1e-12) { <span class="comment">// Avoid division by zero</span></div>
|
||
<div class="line"><a id="l00339" name="l00339"></a><span class="lineno"> 339</span> <span class="keyword">const</span> <span class="keywordtype">double</span> h1_relative_change = std::abs(h1_new - h1_old) / h1_old;</div>
|
||
<div class="line"><a id="l00340" name="l00340"></a><span class="lineno"> 340</span> <span class="keywordflow">if</span> (h1_relative_change > fuel_threshold) {</div>
|
||
<div class="line"><a id="l00341" name="l00341"></a><span class="lineno"> 341</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a>, <span class="stringliteral">"H-1 mass fraction changed by {:.1f}%, triggering view update."</span>, h1_relative_change * 100);</div>
|
||
<div class="line"><a id="l00342" name="l00342"></a><span class="lineno"> 342</span> <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
|
||
<div class="line"><a id="l00343" name="l00343"></a><span class="lineno"> 343</span> }</div>
|
||
<div class="line"><a id="l00344" name="l00344"></a><span class="lineno"> 344</span> }</div>
|
||
<div class="line"><a id="l00345" name="l00345"></a><span class="lineno"> 345</span> </div>
|
||
<div class="line"><a id="l00346" name="l00346"></a><span class="lineno"> 346</span> <span class="comment">// If none of the above conditions are met, the current view is still good enough.</span></div>
|
||
<div class="line"><a id="l00347" name="l00347"></a><span class="lineno"> 347</span> <span class="keywordflow">return</span> <span class="keyword">false</span>;</div>
|
||
<div class="line"><a id="l00348" name="l00348"></a><span class="lineno"> 348</span> }</div>
|
||
</div>
|
||
<div class="line"><a id="l00349" name="l00349"></a><span class="lineno"> 349</span> </div>
|
||
<div class="foldopen" id="foldopen00350" data-start="{" data-end="}">
|
||
<div class="line"><a id="l00350" name="l00350"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#ae0b6362d9c0a14e69c7a47233db6a86a"> 350</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#ae0b6362d9c0a14e69c7a47233db6a86a">QSENetworkSolver::RHSFunctor::operator()</a>(</div>
|
||
<div class="line"><a id="l00351" name="l00351"></a><span class="lineno"> 351</span> <span class="keyword">const</span> boost::numeric::ublas::vector<double> &YDynamic,</div>
|
||
<div class="line"><a id="l00352" name="l00352"></a><span class="lineno"> 352</span> boost::numeric::ublas::vector<double> &dYdtDynamic,</div>
|
||
<div class="line"><a id="l00353" name="l00353"></a><span class="lineno"> 353</span> <span class="keywordtype">double</span> t</div>
|
||
<div class="line"><a id="l00354" name="l00354"></a><span class="lineno"> 354</span> )<span class="keyword"> const </span>{</div>
|
||
<div class="line"><a id="l00355" name="l00355"></a><span class="lineno"> 355</span> <span class="comment">// --- Populate the slow / dynamic species vector ---</span></div>
|
||
<div class="line"><a id="l00356" name="l00356"></a><span class="lineno"> 356</span> std::vector<double> YFull(<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a0d8d28a6559cfed5e7cd683523d49b2c">m_engine</a>.getNetworkSpecies().size());</div>
|
||
<div class="line"><a id="l00357" name="l00357"></a><span class="lineno"> 357</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a3ac1ef529627d21f7d1ad718dc87f7f9">m_dynamicSpeciesIndices</a>.size(); ++i) {</div>
|
||
<div class="line"><a id="l00358" name="l00358"></a><span class="lineno"> 358</span> YFull[<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a3ac1ef529627d21f7d1ad718dc87f7f9">m_dynamicSpeciesIndices</a>[i]] = YDynamic(i);</div>
|
||
<div class="line"><a id="l00359" name="l00359"></a><span class="lineno"> 359</span> }</div>
|
||
<div class="line"><a id="l00360" name="l00360"></a><span class="lineno"> 360</span> </div>
|
||
<div class="line"><a id="l00361" name="l00361"></a><span class="lineno"> 361</span> <span class="comment">// --- Populate the QSE species vector ---</span></div>
|
||
<div class="line"><a id="l00362" name="l00362"></a><span class="lineno"> 362</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a6be7259897a47ce480b289144b06e269">m_QSESpeciesIndices</a>.size(); ++i) {</div>
|
||
<div class="line"><a id="l00363" name="l00363"></a><span class="lineno"> 363</span> YFull[<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a6be7259897a47ce480b289144b06e269">m_QSESpeciesIndices</a>[i]] = <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a02c23ef20d616bf5a591a274b66cd75a">m_Y_QSE</a>(i);</div>
|
||
<div class="line"><a id="l00364" name="l00364"></a><span class="lineno"> 364</span> }</div>
|
||
<div class="line"><a id="l00365" name="l00365"></a><span class="lineno"> 365</span> </div>
|
||
<div class="line"><a id="l00366" name="l00366"></a><span class="lineno"> 366</span> <span class="keyword">auto</span> [full_dYdt, specificEnergyRate] = <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a0d8d28a6559cfed5e7cd683523d49b2c">m_engine</a>.calculateRHSAndEnergy(YFull, <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a35026100163c7cc6fdb4c2e4d988b8cb">m_T9</a>, <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#adc0f8e655af42f414dcb220a7224f261">m_rho</a>);</div>
|
||
<div class="line"><a id="l00367" name="l00367"></a><span class="lineno"> 367</span> </div>
|
||
<div class="line"><a id="l00368" name="l00368"></a><span class="lineno"> 368</span> dYdtDynamic.resize(<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a3ac1ef529627d21f7d1ad718dc87f7f9">m_dynamicSpeciesIndices</a>.size() + 1);</div>
|
||
<div class="line"><a id="l00369" name="l00369"></a><span class="lineno"> 369</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a3ac1ef529627d21f7d1ad718dc87f7f9">m_dynamicSpeciesIndices</a>.size(); ++i) {</div>
|
||
<div class="line"><a id="l00370" name="l00370"></a><span class="lineno"> 370</span> dYdtDynamic(i) = full_dYdt[<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a3ac1ef529627d21f7d1ad718dc87f7f9">m_dynamicSpeciesIndices</a>[i]];</div>
|
||
<div class="line"><a id="l00371" name="l00371"></a><span class="lineno"> 371</span> }</div>
|
||
<div class="line"><a id="l00372" name="l00372"></a><span class="lineno"> 372</span> dYdtDynamic[<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a3ac1ef529627d21f7d1ad718dc87f7f9">m_dynamicSpeciesIndices</a>.size()] = specificEnergyRate;</div>
|
||
<div class="line"><a id="l00373" name="l00373"></a><span class="lineno"> 373</span> }</div>
|
||
</div>
|
||
<div class="line"><a id="l00374" name="l00374"></a><span class="lineno"> 374</span> </div>
|
||
<div class="foldopen" id="foldopen00375" data-start="{" data-end="}">
|
||
<div class="line"><a id="l00375" name="l00375"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a"> 375</a></span> <a class="code hl_struct" href="structgridfire_1_1_net_out.html">NetOut</a> <a class="code hl_function" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a">DirectNetworkSolver::evaluate</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a> &netIn) {</div>
|
||
<div class="line"><a id="l00376" name="l00376"></a><span class="lineno"> 376</span> <span class="keyword">namespace </span>ublas = boost::numeric::ublas;</div>
|
||
<div class="line"><a id="l00377" name="l00377"></a><span class="lineno"> 377</span> <span class="keyword">namespace </span>odeint = boost::numeric::odeint;</div>
|
||
<div class="line"><a id="l00378" name="l00378"></a><span class="lineno"> 378</span> <span class="keyword">using </span>fourdst::composition::Composition;</div>
|
||
<div class="line"><a id="l00379" name="l00379"></a><span class="lineno"> 379</span> </div>
|
||
<div class="line"><a id="l00380" name="l00380"></a><span class="lineno"> 380</span> </div>
|
||
<div class="line"><a id="l00381" name="l00381"></a><span class="lineno"> 381</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9 = netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be">temperature</a> / 1e9; <span class="comment">// Convert temperature from Kelvin to T9 (T9 = T / 1e9)</span></div>
|
||
<div class="line"><a id="l00382" name="l00382"></a><span class="lineno"> 382</span> <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">long</span> numSpecies = <a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.getNetworkSpecies().size();</div>
|
||
<div class="line"><a id="l00383" name="l00383"></a><span class="lineno"> 383</span> </div>
|
||
<div class="line"><a id="l00384" name="l00384"></a><span class="lineno"> 384</span> <span class="keyword">const</span> <span class="keyword">auto</span> absTol = <a class="code hl_variable" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0d1b52d06b0521e7c556d75cd8d2ffe6">m_config</a>.get<<span class="keywordtype">double</span>>(<span class="stringliteral">"gridfire:solver:DirectNetworkSolver:absTol"</span>, 1.0e-8);</div>
|
||
<div class="line"><a id="l00385" name="l00385"></a><span class="lineno"> 385</span> <span class="keyword">const</span> <span class="keyword">auto</span> relTol = <a class="code hl_variable" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0d1b52d06b0521e7c556d75cd8d2ffe6">m_config</a>.get<<span class="keywordtype">double</span>>(<span class="stringliteral">"gridfire:solver:DirectNetworkSolver:relTol"</span>, 1.0e-8);</div>
|
||
<div class="line"><a id="l00386" name="l00386"></a><span class="lineno"> 386</span> </div>
|
||
<div class="line"><a id="l00387" name="l00387"></a><span class="lineno"> 387</span> <span class="keywordtype">size_t</span> stepCount = 0;</div>
|
||
<div class="line"><a id="l00388" name="l00388"></a><span class="lineno"> 388</span> </div>
|
||
<div class="line"><a id="l00389" name="l00389"></a><span class="lineno"> 389</span> <a class="code hl_struct" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html">RHSFunctor</a> rhsFunctor(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>, T9, netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577">density</a>);</div>
|
||
<div class="line"><a id="l00390" name="l00390"></a><span class="lineno"> 390</span> <a class="code hl_struct" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html">JacobianFunctor</a> jacobianFunctor(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>, T9, netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577">density</a>);</div>
|
||
<div class="line"><a id="l00391" name="l00391"></a><span class="lineno"> 391</span> </div>
|
||
<div class="line"><a id="l00392" name="l00392"></a><span class="lineno"> 392</span> ublas::vector<double> Y(numSpecies + 1);</div>
|
||
<div class="line"><a id="l00393" name="l00393"></a><span class="lineno"> 393</span> </div>
|
||
<div class="line"><a id="l00394" name="l00394"></a><span class="lineno"> 394</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < numSpecies; ++i) {</div>
|
||
<div class="line"><a id="l00395" name="l00395"></a><span class="lineno"> 395</span> <span class="keyword">const</span> <span class="keyword">auto</span>& species = <a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.getNetworkSpecies()[i];</div>
|
||
<div class="line"><a id="l00396" name="l00396"></a><span class="lineno"> 396</span> <span class="keywordflow">try</span> {</div>
|
||
<div class="line"><a id="l00397" name="l00397"></a><span class="lineno"> 397</span> Y(i) = netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">composition</a>.getMolarAbundance(std::string(species.name()));</div>
|
||
<div class="line"><a id="l00398" name="l00398"></a><span class="lineno"> 398</span> } <span class="keywordflow">catch</span> (<span class="keyword">const</span> std::runtime_error) {</div>
|
||
<div class="line"><a id="l00399" name="l00399"></a><span class="lineno"> 399</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079">m_logger</a>, <span class="stringliteral">"Species '{}' not found in composition. Setting abundance to 0.0."</span>, species.name());</div>
|
||
<div class="line"><a id="l00400" name="l00400"></a><span class="lineno"> 400</span> Y(i) = 0.0;</div>
|
||
<div class="line"><a id="l00401" name="l00401"></a><span class="lineno"> 401</span> }</div>
|
||
<div class="line"><a id="l00402" name="l00402"></a><span class="lineno"> 402</span> }</div>
|
||
<div class="line"><a id="l00403" name="l00403"></a><span class="lineno"> 403</span> Y(numSpecies) = 0.0;</div>
|
||
<div class="line"><a id="l00404" name="l00404"></a><span class="lineno"> 404</span> </div>
|
||
<div class="line"><a id="l00405" name="l00405"></a><span class="lineno"> 405</span> <span class="keyword">const</span> <span class="keyword">auto</span> stepper = odeint::make_controlled<odeint::rosenbrock4<double>>(absTol, relTol);</div>
|
||
<div class="line"><a id="l00406" name="l00406"></a><span class="lineno"> 406</span> stepCount = odeint::integrate_adaptive(</div>
|
||
<div class="line"><a id="l00407" name="l00407"></a><span class="lineno"> 407</span> stepper,</div>
|
||
<div class="line"><a id="l00408" name="l00408"></a><span class="lineno"> 408</span> std::make_pair(rhsFunctor, jacobianFunctor),</div>
|
||
<div class="line"><a id="l00409" name="l00409"></a><span class="lineno"> 409</span> Y,</div>
|
||
<div class="line"><a id="l00410" name="l00410"></a><span class="lineno"> 410</span> 0.0,</div>
|
||
<div class="line"><a id="l00411" name="l00411"></a><span class="lineno"> 411</span> netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1">tMax</a>,</div>
|
||
<div class="line"><a id="l00412" name="l00412"></a><span class="lineno"> 412</span> netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a">dt0</a></div>
|
||
<div class="line"><a id="l00413" name="l00413"></a><span class="lineno"> 413</span> );</div>
|
||
<div class="line"><a id="l00414" name="l00414"></a><span class="lineno"> 414</span> </div>
|
||
<div class="line"><a id="l00415" name="l00415"></a><span class="lineno"> 415</span> std::vector<double> finalMassFractions(numSpecies);</div>
|
||
<div class="line"><a id="l00416" name="l00416"></a><span class="lineno"> 416</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < numSpecies; ++i) {</div>
|
||
<div class="line"><a id="l00417" name="l00417"></a><span class="lineno"> 417</span> <span class="keyword">const</span> <span class="keywordtype">double</span> molarMass = <a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.getNetworkSpecies()[i].mass();</div>
|
||
<div class="line"><a id="l00418" name="l00418"></a><span class="lineno"> 418</span> finalMassFractions[i] = Y(i) * molarMass; <span class="comment">// Convert from molar abundance to mass fraction</span></div>
|
||
<div class="line"><a id="l00419" name="l00419"></a><span class="lineno"> 419</span> <span class="keywordflow">if</span> (finalMassFractions[i] < <a class="code hl_variable" href="namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06">MIN_ABUNDANCE_THRESHOLD</a>) {</div>
|
||
<div class="line"><a id="l00420" name="l00420"></a><span class="lineno"> 420</span> finalMassFractions[i] = 0.0;</div>
|
||
<div class="line"><a id="l00421" name="l00421"></a><span class="lineno"> 421</span> }</div>
|
||
<div class="line"><a id="l00422" name="l00422"></a><span class="lineno"> 422</span> }</div>
|
||
<div class="line"><a id="l00423" name="l00423"></a><span class="lineno"> 423</span> </div>
|
||
<div class="line"><a id="l00424" name="l00424"></a><span class="lineno"> 424</span> std::vector<std::string> speciesNames;</div>
|
||
<div class="line"><a id="l00425" name="l00425"></a><span class="lineno"> 425</span> speciesNames.reserve(numSpecies);</div>
|
||
<div class="line"><a id="l00426" name="l00426"></a><span class="lineno"> 426</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& species : <a class="code hl_variable" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a>.getNetworkSpecies()) {</div>
|
||
<div class="line"><a id="l00427" name="l00427"></a><span class="lineno"> 427</span> speciesNames.push_back(std::string(species.name()));</div>
|
||
<div class="line"><a id="l00428" name="l00428"></a><span class="lineno"> 428</span> }</div>
|
||
<div class="line"><a id="l00429" name="l00429"></a><span class="lineno"> 429</span> </div>
|
||
<div class="line"><a id="l00430" name="l00430"></a><span class="lineno"> 430</span> Composition outputComposition(speciesNames);</div>
|
||
<div class="line"><a id="l00431" name="l00431"></a><span class="lineno"> 431</span> outputComposition.setMassFraction(speciesNames, finalMassFractions);</div>
|
||
<div class="line"><a id="l00432" name="l00432"></a><span class="lineno"> 432</span> outputComposition.finalize(<span class="keyword">true</span>);</div>
|
||
<div class="line"><a id="l00433" name="l00433"></a><span class="lineno"> 433</span> </div>
|
||
<div class="line"><a id="l00434" name="l00434"></a><span class="lineno"> 434</span> <a class="code hl_struct" href="structgridfire_1_1_net_out.html">NetOut</a> netOut;</div>
|
||
<div class="line"><a id="l00435" name="l00435"></a><span class="lineno"> 435</span> netOut.<a class="code hl_variable" href="structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a">composition</a> = std::move(outputComposition);</div>
|
||
<div class="line"><a id="l00436" name="l00436"></a><span class="lineno"> 436</span> netOut.<a class="code hl_variable" href="structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6">energy</a> = Y(numSpecies); <span class="comment">// Specific energy rate</span></div>
|
||
<div class="line"><a id="l00437" name="l00437"></a><span class="lineno"> 437</span> netOut.<a class="code hl_variable" href="structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6">num_steps</a> = stepCount;</div>
|
||
<div class="line"><a id="l00438" name="l00438"></a><span class="lineno"> 438</span> </div>
|
||
<div class="line"><a id="l00439" name="l00439"></a><span class="lineno"> 439</span> <span class="keywordflow">return</span> netOut;</div>
|
||
<div class="line"><a id="l00440" name="l00440"></a><span class="lineno"> 440</span> }</div>
|
||
</div>
|
||
<div class="line"><a id="l00441" name="l00441"></a><span class="lineno"> 441</span> </div>
|
||
<div class="foldopen" id="foldopen00442" data-start="{" data-end="}">
|
||
<div class="line"><a id="l00442" name="l00442"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a3a7542b6c6b4c86b6fe53f54d7232919"> 442</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a3a7542b6c6b4c86b6fe53f54d7232919">DirectNetworkSolver::RHSFunctor::operator()</a>(</div>
|
||
<div class="line"><a id="l00443" name="l00443"></a><span class="lineno"> 443</span> <span class="keyword">const</span> boost::numeric::ublas::vector<double> &Y,</div>
|
||
<div class="line"><a id="l00444" name="l00444"></a><span class="lineno"> 444</span> boost::numeric::ublas::vector<double> &dYdt,</div>
|
||
<div class="line"><a id="l00445" name="l00445"></a><span class="lineno"> 445</span> <span class="keywordtype">double</span> t</div>
|
||
<div class="line"><a id="l00446" name="l00446"></a><span class="lineno"> 446</span> )<span class="keyword"> const </span>{</div>
|
||
<div class="line"><a id="l00447" name="l00447"></a><span class="lineno"> 447</span> <span class="keyword">const</span> std::vector<double> y(Y.begin(), <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#ac4a1af03d2a4fbc5cc2407b8a6833147">m_numSpecies</a> + Y.begin());</div>
|
||
<div class="line"><a id="l00448" name="l00448"></a><span class="lineno"> 448</span> </div>
|
||
<div class="line"><a id="l00449" name="l00449"></a><span class="lineno"> 449</span> <span class="comment">// std::string timescales = utils::formatNuclearTimescaleLogString(</span></div>
|
||
<div class="line"><a id="l00450" name="l00450"></a><span class="lineno"> 450</span> <span class="comment">// m_engine,</span></div>
|
||
<div class="line"><a id="l00451" name="l00451"></a><span class="lineno"> 451</span> <span class="comment">// y,</span></div>
|
||
<div class="line"><a id="l00452" name="l00452"></a><span class="lineno"> 452</span> <span class="comment">// m_T9,</span></div>
|
||
<div class="line"><a id="l00453" name="l00453"></a><span class="lineno"> 453</span> <span class="comment">// m_rho</span></div>
|
||
<div class="line"><a id="l00454" name="l00454"></a><span class="lineno"> 454</span> <span class="comment">// );</span></div>
|
||
<div class="line"><a id="l00455" name="l00455"></a><span class="lineno"> 455</span> <span class="comment">// LOG_TRACE_L2(m_logger, "{}", timescales);</span></div>
|
||
<div class="line"><a id="l00456" name="l00456"></a><span class="lineno"> 456</span> </div>
|
||
<div class="line"><a id="l00457" name="l00457"></a><span class="lineno"> 457</span> <span class="keyword">auto</span> [dydt, eps] = <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a04f8c84e46e6fbd0977e50fda4829d1a">m_engine</a>.calculateRHSAndEnergy(y, <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a082844f1eae0609e66620575210e8823">m_T9</a>, <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a7d4f7f04c4ee6f0b519194f87aa265e7">m_rho</a>);</div>
|
||
<div class="line"><a id="l00458" name="l00458"></a><span class="lineno"> 458</span> dYdt.resize(<a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#ac4a1af03d2a4fbc5cc2407b8a6833147">m_numSpecies</a> + 1);</div>
|
||
<div class="line"><a id="l00459" name="l00459"></a><span class="lineno"> 459</span> std::ranges::copy(dydt, dYdt.begin());</div>
|
||
<div class="line"><a id="l00460" name="l00460"></a><span class="lineno"> 460</span> dYdt(<a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#ac4a1af03d2a4fbc5cc2407b8a6833147">m_numSpecies</a>) = eps;</div>
|
||
<div class="line"><a id="l00461" name="l00461"></a><span class="lineno"> 461</span> }</div>
|
||
</div>
|
||
<div class="line"><a id="l00462" name="l00462"></a><span class="lineno"> 462</span> </div>
|
||
<div class="foldopen" id="foldopen00463" data-start="{" data-end="}">
|
||
<div class="line"><a id="l00463" name="l00463"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9"> 463</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9">DirectNetworkSolver::JacobianFunctor::operator()</a>(</div>
|
||
<div class="line"><a id="l00464" name="l00464"></a><span class="lineno"> 464</span> <span class="keyword">const</span> boost::numeric::ublas::vector<double> &Y,</div>
|
||
<div class="line"><a id="l00465" name="l00465"></a><span class="lineno"> 465</span> boost::numeric::ublas::matrix<double> &J,</div>
|
||
<div class="line"><a id="l00466" name="l00466"></a><span class="lineno"> 466</span> <span class="keywordtype">double</span> t,</div>
|
||
<div class="line"><a id="l00467" name="l00467"></a><span class="lineno"> 467</span> boost::numeric::ublas::vector<double> &dfdt</div>
|
||
<div class="line"><a id="l00468" name="l00468"></a><span class="lineno"> 468</span> )<span class="keyword"> const </span>{</div>
|
||
<div class="line"><a id="l00469" name="l00469"></a><span class="lineno"> 469</span> J.resize(<a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353">m_numSpecies</a>+1, <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353">m_numSpecies</a>+1);</div>
|
||
<div class="line"><a id="l00470" name="l00470"></a><span class="lineno"> 470</span> J.clear();</div>
|
||
<div class="line"><a id="l00471" name="l00471"></a><span class="lineno"> 471</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353">m_numSpecies</a>; ++i) {</div>
|
||
<div class="line"><a id="l00472" name="l00472"></a><span class="lineno"> 472</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> j = 0; j < <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353">m_numSpecies</a>; ++j) {</div>
|
||
<div class="line"><a id="l00473" name="l00473"></a><span class="lineno"> 473</span> J(i, j) = <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0">m_engine</a>.getJacobianMatrixEntry(i, j);</div>
|
||
<div class="line"><a id="l00474" name="l00474"></a><span class="lineno"> 474</span> }</div>
|
||
<div class="line"><a id="l00475" name="l00475"></a><span class="lineno"> 475</span> }</div>
|
||
<div class="line"><a id="l00476" name="l00476"></a><span class="lineno"> 476</span> }</div>
|
||
</div>
|
||
<div class="line"><a id="l00477" name="l00477"></a><span class="lineno"> 477</span>}</div>
|
||
<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00121">engine_abstract.h:121</a></div></div>
|
||
<div class="ttc" id="aclassgridfire_1_1_engine_html_a020e1b493d6964cafdad08fde697ceb3"><div class="ttname"><a href="classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3">gridfire::Engine::getNetworkSpecies</a></div><div class="ttdeci">virtual const std::vector< fourdst::atomic::Species > & getNetworkSpecies() const =0</div><div class="ttdoc">Get the list of species in the network.</div></div>
|
||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_direct_network_solver_html"><div class="ttname"><a href="classgridfire_1_1solver_1_1_direct_network_solver.html">gridfire::solver::DirectNetworkSolver</a></div><div class="ttdoc">A network solver that directly integrates the reaction network ODEs.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00386">solver.h:386</a></div></div>
|
||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_direct_network_solver_html_a093aa89fd23c2fe03266e286871c7079"><div class="ttname"><a href="classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079">gridfire::solver::DirectNetworkSolver::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdoc">Logger instance.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00491">solver.h:491</a></div></div>
|
||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_direct_network_solver_html_a0d1b52d06b0521e7c556d75cd8d2ffe6"><div class="ttname"><a href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0d1b52d06b0521e7c556d75cd8d2ffe6">gridfire::solver::DirectNetworkSolver::m_config</a></div><div class="ttdeci">fourdst::config::Config & m_config</div><div class="ttdoc">Configuration instance.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00492">solver.h:492</a></div></div>
|
||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_direct_network_solver_html_a0e8a4b8ef656e0b084d11bea982e412a"><div class="ttname"><a href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a">gridfire::solver::DirectNetworkSolver::evaluate</a></div><div class="ttdeci">NetOut evaluate(const NetIn &netIn) override</div><div class="ttdoc">Evaluates the network for a given timestep using direct integration.</div><div class="ttdef"><b>Definition</b> <a href="#l00375">solver.cpp:375</a></div></div>
|
||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_network_solver_strategy_html_a724924d94eaf82b67d9988a55c3261e8"><div class="ttname"><a href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">gridfire::solver::NetworkSolverStrategy< DynamicEngine >::m_engine</a></div><div class="ttdeci">DynamicEngine & m_engine</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00063">solver.h:63</a></div></div>
|
||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a00d112f6087f6e3a93f4d40a519308d2"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a00d112f6087f6e3a93f4d40a519308d2">gridfire::solver::QSENetworkSolver::calculateSteadyStateAbundances</a></div><div class="ttdeci">Eigen::VectorXd calculateSteadyStateAbundances(const std::vector< double > &Y, const double T9, const double rho, const dynamicQSESpeciesIndices &indices) const</div><div class="ttdoc">Calculates the steady-state abundances of the QSE species.</div><div class="ttdef"><b>Definition</b> <a href="#l00205">solver.cpp:205</a></div></div>
|
||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a35f1f6ede393f15c8bb8862f3f1c3b07"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a35f1f6ede393f15c8bb8862f3f1c3b07">gridfire::solver::QSENetworkSolver::shouldUpdateView</a></div><div class="ttdeci">bool shouldUpdateView(const NetIn &conditions) const</div><div class="ttdoc">Determines whether the adaptive engine view should be updated.</div><div class="ttdef"><b>Definition</b> <a href="#l00308">solver.cpp:308</a></div></div>
|
||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a3c9d46c8f5c519854cd65309a588772f"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f">gridfire::solver::QSENetworkSolver::m_lastSeenConditions</a></div><div class="ttdeci">NetIn m_lastSeenConditions</div><div class="ttdoc">The last seen input conditions.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00373">solver.h:373</a></div></div>
|
||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a428b49fa7878559665363de06f1a44a7"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">gridfire::solver::QSENetworkSolver::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdoc">Logger instance.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00369">solver.h:369</a></div></div>
|
||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a53b5496db7fed6f345dca39656bf9c0e"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a53b5496db7fed6f345dca39656bf9c0e">gridfire::solver::QSENetworkSolver::evaluate</a></div><div class="ttdeci">NetOut evaluate(const NetIn &netIn) override</div><div class="ttdoc">Evaluates the network for a given timestep using the QSE approach.</div><div class="ttdef"><b>Definition</b> <a href="#l00026">solver.cpp:26</a></div></div>
|
||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a5d81ee5bfcfd5e77fe52201ba9e63719"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a5d81ee5bfcfd5e77fe52201ba9e63719">gridfire::solver::QSENetworkSolver::packSpeciesTypeIndexVectors</a></div><div class="ttdeci">dynamicQSESpeciesIndices packSpeciesTypeIndexVectors(const std::vector< double > &Y, const double T9, const double rho) const</div><div class="ttdoc">Packs the species indices into vectors based on their type (dynamic or QSE).</div><div class="ttdef"><b>Definition</b> <a href="#l00137">solver.cpp:137</a></div></div>
|
||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a7d19b6e50db34d38c81afec76bbedee1"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1">gridfire::solver::QSENetworkSolver::m_config</a></div><div class="ttdeci">fourdst::config::Config & m_config</div><div class="ttdoc">Configuration instance.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00370">solver.h:370</a></div></div>
|
||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_ab07e68fd418ab058f890502d191b3f18"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#ab07e68fd418ab058f890502d191b3f18">gridfire::solver::QSENetworkSolver::m_isViewInitialized</a></div><div class="ttdeci">bool m_isViewInitialized</div><div class="ttdoc">Flag indicating whether the adaptive engine view has been initialized.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00372">solver.h:372</a></div></div>
|
||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_abaa567001df0007b714f474febae408b"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#abaa567001df0007b714f474febae408b">gridfire::solver::QSENetworkSolver::initializeNetworkWithShortIgnition</a></div><div class="ttdeci">NetOut initializeNetworkWithShortIgnition(const NetIn &netIn) const</div><div class="ttdoc">Initializes the network with a short ignition phase.</div><div class="ttdef"><b>Definition</b> <a href="#l00264">solver.cpp:264</a></div></div>
|
||
<div class="ttc" id="aengine__graph_8h_html"><div class="ttname"><a href="engine__graph_8h.html">engine_graph.h</a></div></div>
|
||
<div class="ttc" id="alogging_8h_html"><div class="ttname"><a href="logging_8h.html">logging.h</a></div></div>
|
||
<div class="ttc" id="anamespacegridfire_1_1screening_html_aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71"><div class="ttname"><a href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71">gridfire::screening::ScreeningType::BARE</a></div><div class="ttdeci">@ BARE</div><div class="ttdoc">No screening applied. The screening factor is always 1.0.</div><div class="ttdef"><b>Definition</b> <a href="screening__types_8h_source.html#l00016">screening_types.h:16</a></div></div>
|
||
<div class="ttc" id="anamespacegridfire_1_1solver_html"><div class="ttname"><a href="namespacegridfire_1_1solver.html">gridfire::solver</a></div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00017">solver.h:17</a></div></div>
|
||
<div class="ttc" id="anamespacegridfire_html_a96c062f94713921e5d7568ecedcdcb06"><div class="ttname"><a href="namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06">gridfire::MIN_ABUNDANCE_THRESHOLD</a></div><div class="ttdeci">static constexpr double MIN_ABUNDANCE_THRESHOLD</div><div class="ttdoc">Minimum abundance threshold below which species are ignored.</div><div class="ttdef"><b>Definition</b> <a href="engine__graph_8h_source.html#l00056">engine_graph.h:56</a></div></div>
|
||
<div class="ttc" id="anetwork_8h_html"><div class="ttname"><a href="network_8h.html">network.h</a></div></div>
|
||
<div class="ttc" id="asolver_8h_html"><div class="ttname"><a href="solver_8h.html">solver.h</a></div></div>
|
||
<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00053">network.h:53</a></div></div>
|
||
<div class="ttc" id="astructgridfire_1_1_net_in_html_a06f0dff9f8927b7cf2da3004c8fa1577"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577">gridfire::NetIn::density</a></div><div class="ttdeci">double density</div><div class="ttdoc">Density in g/cm^3.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00058">network.h:58</a></div></div>
|
||
<div class="ttc" id="astructgridfire_1_1_net_in_html_a0a8d820cfeaa92ee31f253795c57e0d1"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1">gridfire::NetIn::tMax</a></div><div class="ttdeci">double tMax</div><div class="ttdoc">Maximum time.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00055">network.h:55</a></div></div>
|
||
<div class="ttc" id="astructgridfire_1_1_net_in_html_a13058f4929e72c1187abbebcddb8aed1"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">gridfire::NetIn::composition</a></div><div class="ttdeci">fourdst::composition::Composition composition</div><div class="ttdoc">Composition of the network.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00054">network.h:54</a></div></div>
|
||
<div class="ttc" id="astructgridfire_1_1_net_in_html_a47781e8d5503e3b4f12d669e2cbcfb65"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65">gridfire::NetIn::MolarAbundance</a></div><div class="ttdeci">std::vector< double > MolarAbundance() const</div><div class="ttdef"><b>Definition</b> <a href="network_8cpp_source.html#l00030">network.cpp:30</a></div></div>
|
||
<div class="ttc" id="astructgridfire_1_1_net_in_html_a4e556f7bb18f46654b3445476734076a"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a">gridfire::NetIn::dt0</a></div><div class="ttdeci">double dt0</div><div class="ttdoc">Initial time step.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00056">network.h:56</a></div></div>
|
||
<div class="ttc" id="astructgridfire_1_1_net_in_html_a5be0f5195a5cd1dd177b9fc5ab83a7be"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be">gridfire::NetIn::temperature</a></div><div class="ttdeci">double temperature</div><div class="ttdoc">Temperature in Kelvin.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00057">network.h:57</a></div></div>
|
||
<div class="ttc" id="astructgridfire_1_1_net_out_html"><div class="ttname"><a href="structgridfire_1_1_net_out.html">gridfire::NetOut</a></div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00065">network.h:65</a></div></div>
|
||
<div class="ttc" id="astructgridfire_1_1_net_out_html_a073529511ae0e52f868b47cce0e8ac0a"><div class="ttname"><a href="structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a">gridfire::NetOut::composition</a></div><div class="ttdeci">fourdst::composition::Composition composition</div><div class="ttdoc">Composition of the network after evaluation.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00066">network.h:66</a></div></div>
|
||
<div class="ttc" id="astructgridfire_1_1_net_out_html_a43d5a861708992c949f616aa2a035ec6"><div class="ttname"><a href="structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6">gridfire::NetOut::energy</a></div><div class="ttdeci">double energy</div><div class="ttdoc">Energy in ergs after evaluation.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00068">network.h:68</a></div></div>
|
||
<div class="ttc" id="astructgridfire_1_1_net_out_html_a51c16703132cf739ec2fd89eae7badd6"><div class="ttname"><a href="structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6">gridfire::NetOut::num_steps</a></div><div class="ttdeci">int num_steps</div><div class="ttdoc">Number of steps taken in the evaluation.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00067">network.h:67</a></div></div>
|
||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a></div><div class="ttdoc">Functor for calculating the Jacobian matrix.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00452">solver.h:452</a></div></div>
|
||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_a3f624142212b5e6ff65f5706953fe353"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353">gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_numSpecies</a></div><div class="ttdeci">const size_t m_numSpecies</div><div class="ttdoc">The number of species in the network.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00456">solver.h:456</a></div></div>
|
||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_a56f8b2b222fb2a7dac190ead0babfdd0"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0">gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_engine</a></div><div class="ttdeci">DynamicEngine & m_engine</div><div class="ttdoc">The engine used to evaluate the network.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00453">solver.h:453</a></div></div>
|
||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_ad4fc0b406218aa2f567f5c61a4eda3c9"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9">gridfire::solver::DirectNetworkSolver::JacobianFunctor::operator()</a></div><div class="ttdeci">void operator()(const boost::numeric::ublas::vector< double > &Y, boost::numeric::ublas::matrix< double > &J, double t, boost::numeric::ublas::vector< double > &dfdt) const</div><div class="ttdoc">Calculates the Jacobian matrix.</div><div class="ttdef"><b>Definition</b> <a href="#l00463">solver.cpp:463</a></div></div>
|
||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html">gridfire::solver::DirectNetworkSolver::RHSFunctor</a></div><div class="ttdoc">Functor for calculating the right-hand side of the ODEs.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00409">solver.h:409</a></div></div>
|
||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_a04f8c84e46e6fbd0977e50fda4829d1a"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a04f8c84e46e6fbd0977e50fda4829d1a">gridfire::solver::DirectNetworkSolver::RHSFunctor::m_engine</a></div><div class="ttdeci">DynamicEngine & m_engine</div><div class="ttdoc">The engine used to evaluate the network.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00410">solver.h:410</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_a082844f1eae0609e66620575210e8823"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a082844f1eae0609e66620575210e8823">gridfire::solver::DirectNetworkSolver::RHSFunctor::m_T9</a></div><div class="ttdeci">const double m_T9</div><div class="ttdoc">Temperature in units of 10^9 K.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00411">solver.h:411</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_a3a7542b6c6b4c86b6fe53f54d7232919"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a3a7542b6c6b4c86b6fe53f54d7232919">gridfire::solver::DirectNetworkSolver::RHSFunctor::operator()</a></div><div class="ttdeci">void operator()(const boost::numeric::ublas::vector< double > &Y, boost::numeric::ublas::vector< double > &dYdt, double t) const</div><div class="ttdoc">Calculates the time derivatives of the species abundances.</div><div class="ttdef"><b>Definition</b> <a href="#l00442">solver.cpp:442</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_a7d4f7f04c4ee6f0b519194f87aa265e7"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a7d4f7f04c4ee6f0b519194f87aa265e7">gridfire::solver::DirectNetworkSolver::RHSFunctor::m_rho</a></div><div class="ttdeci">const double m_rho</div><div class="ttdoc">Density in g/cm^3.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00412">solver.h:412</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_ac4a1af03d2a4fbc5cc2407b8a6833147"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#ac4a1af03d2a4fbc5cc2407b8a6833147">gridfire::solver::DirectNetworkSolver::RHSFunctor::m_numSpecies</a></div><div class="ttdeci">const size_t m_numSpecies</div><div class="ttdoc">The number of species in the network.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00413">solver.h:413</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html">gridfire::solver::QSENetworkSolver::EigenFunctor</a></div><div class="ttdoc">Functor for calculating the residual and Jacobian for the QSE species using Eigen.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00309">solver.h:309</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html">gridfire::solver::QSENetworkSolver::RHSFunctor</a></div><div class="ttdoc">Functor for calculating the right-hand side of the ODEs for the dynamic species.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00201">solver.h:201</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_a02c23ef20d616bf5a591a274b66cd75a"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a02c23ef20d616bf5a591a274b66cd75a">gridfire::solver::QSENetworkSolver::RHSFunctor::m_Y_QSE</a></div><div class="ttdeci">const Eigen::VectorXd & m_Y_QSE</div><div class="ttdoc">Steady-state abundances of the QSE species.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00205">solver.h:205</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_a0d8d28a6559cfed5e7cd683523d49b2c"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a0d8d28a6559cfed5e7cd683523d49b2c">gridfire::solver::QSENetworkSolver::RHSFunctor::m_engine</a></div><div class="ttdeci">DynamicEngine & m_engine</div><div class="ttdoc">The engine used to evaluate the network.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00202">solver.h:202</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_a35026100163c7cc6fdb4c2e4d988b8cb"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a35026100163c7cc6fdb4c2e4d988b8cb">gridfire::solver::QSENetworkSolver::RHSFunctor::m_T9</a></div><div class="ttdeci">const double m_T9</div><div class="ttdoc">Temperature in units of 10^9 K.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00206">solver.h:206</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_a3ac1ef529627d21f7d1ad718dc87f7f9"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a3ac1ef529627d21f7d1ad718dc87f7f9">gridfire::solver::QSENetworkSolver::RHSFunctor::m_dynamicSpeciesIndices</a></div><div class="ttdeci">const std::vector< size_t > & m_dynamicSpeciesIndices</div><div class="ttdoc">Indices of the dynamic species.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00203">solver.h:203</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_a6be7259897a47ce480b289144b06e269"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a6be7259897a47ce480b289144b06e269">gridfire::solver::QSENetworkSolver::RHSFunctor::m_QSESpeciesIndices</a></div><div class="ttdeci">const std::vector< size_t > & m_QSESpeciesIndices</div><div class="ttdoc">Indices of the QSE species.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00204">solver.h:204</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_adc0f8e655af42f414dcb220a7224f261"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#adc0f8e655af42f414dcb220a7224f261">gridfire::solver::QSENetworkSolver::RHSFunctor::m_rho</a></div><div class="ttdeci">const double m_rho</div><div class="ttdoc">Density in g/cm^3.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00207">solver.h:207</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_ae0b6362d9c0a14e69c7a47233db6a86a"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#ae0b6362d9c0a14e69c7a47233db6a86a">gridfire::solver::QSENetworkSolver::RHSFunctor::operator()</a></div><div class="ttdeci">void operator()(const boost::numeric::ublas::vector< double > &YDynamic, boost::numeric::ublas::vector< double > &dYdtDynamic, double t) const</div><div class="ttdoc">Calculates the time derivatives of the dynamic species.</div><div class="ttdef"><b>Definition</b> <a href="#l00350">solver.cpp:350</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1dynamic_q_s_e_species_indices_html"><div class="ttname"><a href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html">gridfire::solver::dynamicQSESpeciesIndices</a></div><div class="ttdoc">Structure to hold indices of dynamic and QSE species.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00027">solver.h:27</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1dynamic_q_s_e_species_indices_html_a7d4ba82d9e60a4914938ebebecaab4a2"><div class="ttname"><a href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2">gridfire::solver::dynamicQSESpeciesIndices::QSESpeciesIndices</a></div><div class="ttdeci">std::vector< size_t > QSESpeciesIndices</div><div class="ttdoc">Indices of fast species that are in QSE.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00029">solver.h:29</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1dynamic_q_s_e_species_indices_html_ac6e0419abdd3c78b32e34c16c0543157"><div class="ttname"><a href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#ac6e0419abdd3c78b32e34c16c0543157">gridfire::solver::dynamicQSESpeciesIndices::dynamicSpeciesIndices</a></div><div class="ttdeci">std::vector< size_t > dynamicSpeciesIndices</div><div class="ttdoc">Indices of slow species that are not in QSE.</div><div class="ttdef"><b>Definition</b> <a href="solver_8h_source.html#l00028">solver.h:28</a></div></div>
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