408 lines
27 KiB
HTML
408 lines
27 KiB
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<div id="projectname">GridFire<span id="projectnumber"> 0.0.1a</span>
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<div id="projectbrief">General Purpose Nuclear Network</div>
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<div class="headertitle"><div class="title">gridfire Namespace Reference</div></div>
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<table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
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Namespaces</h2></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace  </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1approx8.html">approx8</a></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace  </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaclib.html">reaclib</a></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace  </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaction.html">reaction</a></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace  </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1solver.html">solver</a></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
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Classes</h2></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">AdaptiveEngineView</a></td></tr>
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<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">An engine view that dynamically adapts the reaction network based on runtime conditions. <a href="classgridfire_1_1_adaptive_engine_view.html#details">More...</a><br /></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a></td></tr>
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<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Abstract class for engines supporting Jacobian and stoichiometry operations. <a href="classgridfire_1_1_dynamic_engine.html#details">More...</a><br /></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_engine.html">Engine</a></td></tr>
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<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Abstract base class for a reaction network engine. <a href="classgridfire_1_1_engine.html#details">More...</a><br /></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_engine_view.html">EngineView</a></td></tr>
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<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Abstract base class for a "view" of a reaction network engine. <a href="classgridfire_1_1_engine_view.html#details">More...</a><br /></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_graph_engine.html">GraphEngine</a></td></tr>
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<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A reaction network engine that uses a graph-based representation. <a href="classgridfire_1_1_graph_engine.html#details">More...</a><br /></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1_net_in.html">NetIn</a></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1_net_out.html">NetOut</a></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_network.html">Network</a></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a></td></tr>
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<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Structure holding derivatives and energy generation for a network step. <a href="structgridfire_1_1_step_derivatives.html#details">More...</a><br /></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="concepts" name="concepts"></a>
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Concepts</h2></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">concept  </td><td class="memItemRight" valign="bottom"><a class="el" href="conceptgridfire_1_1_is_arithmetic_or_a_d.html">IsArithmeticOrAD</a></td></tr>
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<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Concept for types allowed in engine calculations. <br /></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">concept  </td><td class="memItemRight" valign="bottom"><a class="el" href="conceptgridfire_1_1_engine_type.html">EngineType</a></td></tr>
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<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Concept for types allowed as engine bases in EngineView. <br /></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="typedef-members" name="typedef-members"></a>
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Typedefs</h2></td></tr>
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<tr class="memitem:a1121d0b2d005195333412559fa29d3cc" id="r_a1121d0b2d005195333412559fa29d3cc"><td class="memItemLeft" align="right" valign="top">typedef CppAD::AD< double > </td><td class="memItemRight" valign="bottom"><a class="el" href="#a1121d0b2d005195333412559fa29d3cc">ADDouble</a></td></tr>
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<tr class="memdesc:a1121d0b2d005195333412559fa29d3cc"><td class="mdescLeft"> </td><td class="mdescRight">Alias for CppAD AD type for double precision. <br /></td></tr>
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<tr class="separator:a1121d0b2d005195333412559fa29d3cc"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="enum-members" name="enum-members"></a>
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Enumerations</h2></td></tr>
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<tr class="memitem:a3f3d6b3f9742b70e62049ccefbb60f37" id="r_a3f3d6b3f9742b70e62049ccefbb60f37"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="#a3f3d6b3f9742b70e62049ccefbb60f37">NetworkFormat</a> { <a class="el" href="#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea">APPROX8</a>
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, <a class="el" href="#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182">REACLIB</a>
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, <a class="el" href="#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2">UNKNOWN</a>
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}</td></tr>
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<tr class="separator:a3f3d6b3f9742b70e62049ccefbb60f37"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
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Functions</h2></td></tr>
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<tr class="memitem:aa77f83539d9ae90e3bf541309bd9c83a" id="r_aa77f83539d9ae90e3bf541309bd9c83a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction_set.html">reaction::LogicalReactionSet</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="#aa77f83539d9ae90e3bf541309bd9c83a">build_reaclib_nuclear_network</a> (const fourdst::composition::Composition &composition, bool reverse)</td></tr>
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<tr class="separator:aa77f83539d9ae90e3bf541309bd9c83a"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a8b245f261cd8d1711ae8d593b054cf98" id="r_a8b245f261cd8d1711ae8d593b054cf98"><td class="memItemLeft" align="right" valign="top">std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="#a8b245f261cd8d1711ae8d593b054cf98">trim_whitespace</a> (const std::string &str)</td></tr>
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<tr class="separator:a8b245f261cd8d1711ae8d593b054cf98"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="var-members" name="var-members"></a>
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Variables</h2></td></tr>
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<tr class="memitem:ada3c137c014ecd8d06200fea2d1a9f50" id="r_ada3c137c014ecd8d06200fea2d1a9f50"><td class="memItemLeft" align="right" valign="top">static constexpr double </td><td class="memItemRight" valign="bottom"><a class="el" href="#ada3c137c014ecd8d06200fea2d1a9f50">MIN_DENSITY_THRESHOLD</a> = 1e-18</td></tr>
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<tr class="memdesc:ada3c137c014ecd8d06200fea2d1a9f50"><td class="mdescLeft"> </td><td class="mdescRight">Minimum density threshold below which reactions are ignored. <br /></td></tr>
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<tr class="separator:ada3c137c014ecd8d06200fea2d1a9f50"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a96c062f94713921e5d7568ecedcdcb06" id="r_a96c062f94713921e5d7568ecedcdcb06"><td class="memItemLeft" align="right" valign="top">static constexpr double </td><td class="memItemRight" valign="bottom"><a class="el" href="#a96c062f94713921e5d7568ecedcdcb06">MIN_ABUNDANCE_THRESHOLD</a> = 1e-18</td></tr>
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<tr class="memdesc:a96c062f94713921e5d7568ecedcdcb06"><td class="mdescLeft"> </td><td class="mdescRight">Minimum abundance threshold below which species are ignored. <br /></td></tr>
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<tr class="separator:a96c062f94713921e5d7568ecedcdcb06"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ae01b1738df1921db565bcbd68dd6cf64" id="r_ae01b1738df1921db565bcbd68dd6cf64"><td class="memItemLeft" align="right" valign="top">static constexpr double </td><td class="memItemRight" valign="bottom"><a class="el" href="#ae01b1738df1921db565bcbd68dd6cf64">MIN_JACOBIAN_THRESHOLD</a> = 1e-24</td></tr>
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<tr class="memdesc:ae01b1738df1921db565bcbd68dd6cf64"><td class="mdescLeft"> </td><td class="mdescRight">Minimum value for Jacobian matrix entries. <br /></td></tr>
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<tr class="separator:ae01b1738df1921db565bcbd68dd6cf64"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a4e9cabad30b57d636c2f0d73d8cc6bb4" id="r_a4e9cabad30b57d636c2f0d73d8cc6bb4"><td class="memItemLeft" align="right" valign="top">static std::unordered_map< <a class="el" href="#a3f3d6b3f9742b70e62049ccefbb60f37">NetworkFormat</a>, std::string > </td><td class="memItemRight" valign="bottom"><a class="el" href="#a4e9cabad30b57d636c2f0d73d8cc6bb4">FormatStringLookup</a></td></tr>
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<tr class="separator:a4e9cabad30b57d636c2f0d73d8cc6bb4"><td class="memSeparator" colspan="2"> </td></tr>
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<h2 class="groupheader">Typedef Documentation</h2>
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<a id="a1121d0b2d005195333412559fa29d3cc" name="a1121d0b2d005195333412559fa29d3cc"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a1121d0b2d005195333412559fa29d3cc">◆ </a></span>ADDouble</h2>
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<td class="memname">typedef CppAD::AD<double> <a class="el" href="#a1121d0b2d005195333412559fa29d3cc">gridfire::ADDouble</a></td>
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<p>Alias for CppAD AD type for double precision. </p>
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<p>This alias simplifies the use of the CppAD automatic differentiation type. </p>
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<p class="definition">Definition at line <a class="el" href="engine__graph_8h_source.html#l00031">31</a> of file <a class="el" href="engine__graph_8h_source.html">engine_graph.h</a>.</p>
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<h2 class="groupheader">Enumeration Type Documentation</h2>
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<a id="a3f3d6b3f9742b70e62049ccefbb60f37" name="a3f3d6b3f9742b70e62049ccefbb60f37"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a3f3d6b3f9742b70e62049ccefbb60f37">◆ </a></span>NetworkFormat</h2>
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<td class="memname">enum <a class="el" href="#a3f3d6b3f9742b70e62049ccefbb60f37">gridfire::NetworkFormat</a></td>
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<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea" name="a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea"></a>APPROX8 </td><td class="fielddoc"><p>Approx8 nuclear reaction network format. </p>
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</td></tr>
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<tr><td class="fieldname"><a id="a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182" name="a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182"></a>REACLIB </td><td class="fielddoc"><p>General REACLIB nuclear reaction network format. </p>
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<tr><td class="fieldname"><a id="a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2" name="a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2"></a>UNKNOWN </td><td class="fielddoc"></td></tr>
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<p class="definition">Definition at line <a class="el" href="network_8h_source.html#l00041">41</a> of file <a class="el" href="network_8h_source.html">network.h</a>.</p>
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<h2 class="groupheader">Function Documentation</h2>
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<h2 class="memtitle"><span class="permalink"><a href="#aa77f83539d9ae90e3bf541309bd9c83a">◆ </a></span>build_reaclib_nuclear_network()</h2>
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<td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction_set.html">reaction::LogicalReactionSet</a> gridfire::build_reaclib_nuclear_network </td>
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<td>(</td>
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<td class="paramtype">const fourdst::composition::Composition &</td> <td class="paramname"><span class="paramname"><em>composition</em></span>, </td>
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<p class="definition">Definition at line <a class="el" href="network_8cpp_source.html#l00064">64</a> of file <a class="el" href="network_8cpp_source.html">network.cpp</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a8b245f261cd8d1711ae8d593b054cf98">◆ </a></span>trim_whitespace()</h2>
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<p class="definition">Definition at line <a class="el" href="network_8cpp_source.html#l00091">91</a> of file <a class="el" href="network_8cpp_source.html">network.cpp</a>.</p>
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<h2 class="groupheader">Variable Documentation</h2>
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<b>Initial value:</b><div class="fragment"><div class="line">= {</div>
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<div class="line"> {<a class="code hl_enumvalue" href="#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea">APPROX8</a>, <span class="stringliteral">"Approx8"</span>},</div>
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<div class="line"> {<a class="code hl_enumvalue" href="#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182">REACLIB</a>, <span class="stringliteral">"REACLIB"</span>},</div>
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<div class="line"> {<a class="code hl_enumvalue" href="#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2">UNKNOWN</a>, <span class="stringliteral">"Unknown"</span>}</div>
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<div class="line"> }</div>
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<div class="ttc" id="anamespacegridfire_html_a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea"><div class="ttname"><a href="#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea">gridfire::APPROX8</a></div><div class="ttdeci">@ APPROX8</div><div class="ttdoc">Approx8 nuclear reaction network format.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00042">network.h:42</a></div></div>
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<div class="ttc" id="anamespacegridfire_html_a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182"><div class="ttname"><a href="#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182">gridfire::REACLIB</a></div><div class="ttdeci">@ REACLIB</div><div class="ttdoc">General REACLIB nuclear reaction network format.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00043">network.h:43</a></div></div>
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<div class="ttc" id="anamespacegridfire_html_a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2"><div class="ttname"><a href="#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2">gridfire::UNKNOWN</a></div><div class="ttdeci">@ UNKNOWN</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00044">network.h:44</a></div></div>
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<p class="definition">Definition at line <a class="el" href="network_8h_source.html#l00047">47</a> of file <a class="el" href="network_8h_source.html">network.h</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a96c062f94713921e5d7568ecedcdcb06">◆ </a></span>MIN_ABUNDANCE_THRESHOLD</h2>
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<p>Minimum abundance threshold below which species are ignored. </p>
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<p>Species with abundances below this threshold are treated as zero in reaction rate calculations. This helps to improve performance by avoiding unnecessary calculations for trace species. </p>
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<p class="definition">Definition at line <a class="el" href="engine__graph_8h_source.html#l00053">53</a> of file <a class="el" href="engine__graph_8h_source.html">engine_graph.h</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#ada3c137c014ecd8d06200fea2d1a9f50">◆ </a></span>MIN_DENSITY_THRESHOLD</h2>
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<p>Minimum density threshold below which reactions are ignored. </p>
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<p>Reactions are not calculated if the density falls below this threshold. This helps to improve performance by avoiding unnecessary calculations in very low-density regimes. </p>
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<p class="definition">Definition at line <a class="el" href="engine__graph_8h_source.html#l00044">44</a> of file <a class="el" href="engine__graph_8h_source.html">engine_graph.h</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#ae01b1738df1921db565bcbd68dd6cf64">◆ </a></span>MIN_JACOBIAN_THRESHOLD</h2>
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<p>Minimum value for Jacobian matrix entries. </p>
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<p>Jacobian matrix entries with absolute values below this threshold are treated as zero to maintain sparsity and improve performance. </p>
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<p class="definition">Definition at line <a class="el" href="engine__graph_8h_source.html#l00061">61</a> of file <a class="el" href="engine__graph_8h_source.html">engine_graph.h</a>.</p>
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