This is the complete list of members for gridfire::engine::MultiscalePartitioningEngineView, including all inherited members.

analyzeTimescalePoolConnectivity(const std::vector< std::vector< fourdst::atomic::Species > > &timescale_pools, const fourdst::composition::Composition &comp, double T9, double rho) const	gridfire::engine::MultiscalePartitioningEngineView	private
buildConnectivityGraph(const std::vector< fourdst::atomic::Species > &species_pool, const fourdst::composition::Composition &comp, double T9, double rho) const	gridfire::engine::MultiscalePartitioningEngineView	private
calculateEpsDerivatives(const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const override	gridfire::engine::MultiscalePartitioningEngineView	virtual
calculateMolarReactionFlow(const reaction::Reaction &reaction, const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const override	gridfire::engine::MultiscalePartitioningEngineView	virtual
calculateRHSAndEnergy(const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const override	gridfire::engine::MultiscalePartitioningEngineView	virtual
collectComposition(const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const override	gridfire::engine::MultiscalePartitioningEngineView	virtual
constructCandidateGroups(const std::vector< std::vector< fourdst::atomic::Species > > &candidate_pools, const fourdst::composition::Composition &comp, double T9, double rho) const	gridfire::engine::MultiscalePartitioningEngineView	private
exportToDot(const std::string &filename, const fourdst::composition::Composition &comp, double T9, double rho) const	gridfire::engine::MultiscalePartitioningEngineView
generateJacobianMatrix(const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const override	gridfire::engine::MultiscalePartitioningEngineView	virtual
generateJacobianMatrix(const fourdst::composition::CompositionAbstract &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const override	gridfire::engine::MultiscalePartitioningEngineView	virtual
generateJacobianMatrix(const fourdst::composition::CompositionAbstract &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const override	gridfire::engine::MultiscalePartitioningEngineView	virtual
generateStoichiometryMatrix() override	gridfire::engine::MultiscalePartitioningEngineView	virtual
getBaseEngine() const override	gridfire::engine::MultiscalePartitioningEngineView	virtual
getDepth() const	gridfire::engine::DynamicEngine	inlinevirtual
getDynamicSpecies() const	gridfire::engine::MultiscalePartitioningEngineView
getFastSpecies() const	gridfire::engine::MultiscalePartitioningEngineView
getNetworkReactions() const override	gridfire::engine::MultiscalePartitioningEngineView	virtual
getNetworkSpecies() const override	gridfire::engine::MultiscalePartitioningEngineView	virtual
getNormalizedEquilibratedComposition(const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const	gridfire::engine::MultiscalePartitioningEngineView
getScreeningModel() const override	gridfire::engine::MultiscalePartitioningEngineView	virtual
getSpeciesDestructionTimescales(const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const override	gridfire::engine::MultiscalePartitioningEngineView	virtual
getSpeciesIndex(const fourdst::atomic::Species &species) const override	gridfire::engine::MultiscalePartitioningEngineView	virtual
getSpeciesStatus(const fourdst::atomic::Species &species) const override	gridfire::engine::MultiscalePartitioningEngineView	virtual
getSpeciesTimescales(const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const override	gridfire::engine::MultiscalePartitioningEngineView	virtual
getStoichiometryMatrixEntry(const fourdst::atomic::Species &species, const reaction::Reaction &reaction) const override	gridfire::engine::MultiscalePartitioningEngineView	virtual
group_is_a_qse_cluster(const fourdst::composition::Composition &comp, double T9, double rho, const QSEGroup &group) const	gridfire::engine::MultiscalePartitioningEngineView	private
group_is_a_qse_pipeline(const fourdst::composition::Composition &comp, double T9, double rho, const QSEGroup &group) const	gridfire::engine::MultiscalePartitioningEngineView	private
identifyMeanSlowestPool(const std::vector< std::vector< fourdst::atomic::Species > > &pools, const fourdst::composition::Composition &comp, double T9, double rho) const	gridfire::engine::MultiscalePartitioningEngineView	private
involvesSpecies(const fourdst::atomic::Species &species) const	gridfire::engine::MultiscalePartitioningEngineView
involvesSpeciesInDynamic(const fourdst::atomic::Species &species) const	gridfire::engine::MultiscalePartitioningEngineView
involvesSpeciesInQSE(const fourdst::atomic::Species &species) const	gridfire::engine::MultiscalePartitioningEngineView
isStale(const NetIn &netIn) override	gridfire::engine::MultiscalePartitioningEngineView	virtual
m_activeReactionIndices	gridfire::engine::MultiscalePartitioningEngineView	private
m_activeSpeciesIndices	gridfire::engine::MultiscalePartitioningEngineView	private
m_algebraic_abundances	gridfire::engine::MultiscalePartitioningEngineView	private
m_algebraic_species	gridfire::engine::MultiscalePartitioningEngineView	private
m_baseEngine	gridfire::engine::MultiscalePartitioningEngineView	private
m_composition_cache	gridfire::engine::MultiscalePartitioningEngineView	mutableprivate
m_dynamic_species	gridfire::engine::MultiscalePartitioningEngineView	private
m_logger	gridfire::engine::MultiscalePartitioningEngineView	private
m_qse_groups	gridfire::engine::MultiscalePartitioningEngineView	private
m_qse_solvers	gridfire::engine::MultiscalePartitioningEngineView	private
m_sun_ctx	gridfire::engine::MultiscalePartitioningEngineView	private
mapNetInToMolarAbundanceVector(const NetIn &netIn) const override	gridfire::engine::MultiscalePartitioningEngineView	virtual
merge_coupled_groups(const std::vector< QSEGroup > &groups, const std::vector< reaction::ReactionSet > &groupReactions)	gridfire::engine::MultiscalePartitioningEngineView	privatestatic
MultiscalePartitioningEngineView(DynamicEngine &baseEngine)	gridfire::engine::MultiscalePartitioningEngineView	explicit
partitionByTimescale(const fourdst::composition::Composition &comp, double T9, double rho) const	gridfire::engine::MultiscalePartitioningEngineView	private
partitionNetwork(const NetIn &netIn)	gridfire::engine::MultiscalePartitioningEngineView
primeEngine(const NetIn &netIn) override	gridfire::engine::MultiscalePartitioningEngineView	virtual
pruneValidatedGroups(const std::vector< QSEGroup > &groups, const std::vector< reaction::ReactionSet > &groupReactions, const fourdst::composition::Composition &comp, double T9, double rho) const	gridfire::engine::MultiscalePartitioningEngineView	private
QSEPartition typedef	gridfire::engine::MultiscalePartitioningEngineView	private
rebuild(const fourdst::composition::CompositionAbstract &comp, BuildDepthType depth)	gridfire::engine::DynamicEngine	inlinevirtual
setNetworkReactions(const reaction::ReactionSet &reactions) override	gridfire::engine::MultiscalePartitioningEngineView	virtual
setScreeningModel(screening::ScreeningType model) override	gridfire::engine::MultiscalePartitioningEngineView	virtual
solveQSEAbundances(const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const	gridfire::engine::MultiscalePartitioningEngineView	private
update(const NetIn &netIn) override	gridfire::engine::MultiscalePartitioningEngineView	virtual
validateGroupsWithFluxAnalysis(const std::vector< QSEGroup > &candidate_groups, const fourdst::composition::Composition &comp, double T9, double rho) const	gridfire::engine::MultiscalePartitioningEngineView	private
~Engine()=default	gridfire::engine::Engine	virtual
~EngineView()=default	gridfire::engine::EngineView< DynamicEngine >	virtual
~MultiscalePartitioningEngineView() override	gridfire::engine::MultiscalePartitioningEngineView