| buildFromFile(const std::string &fileName) | gridfire::FileDefinedEngineView | private |
| calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< double > &Y_defined, const double T9, const double rho) const override | gridfire::FileDefinedEngineView | virtual |
| calculateRHSAndEnergy(const std::vector< double > &Y_defined, const double T9, const double rho) const override | gridfire::FileDefinedEngineView | virtual |
| Config typedef | gridfire::FileDefinedEngineView | private |
| constructReactionIndexMap() const | gridfire::FileDefinedEngineView | private |
| constructSpeciesIndexMap() const | gridfire::FileDefinedEngineView | private |
| FileDefinedEngineView(DynamicEngine &baseEngine, const std::string &fileName, const io::NetworkFileParser &parser) | gridfire::FileDefinedEngineView | explicit |
| generateJacobianMatrix(const std::vector< double > &Y_defined, const double T9, const double rho) override | gridfire::FileDefinedEngineView | virtual |
| generateStoichiometryMatrix() override | gridfire::FileDefinedEngineView | virtual |
| getBaseEngine() const override | gridfire::FileDefinedEngineView | virtual |
| getJacobianMatrixEntry(const int i_defined, const int j_defined) const override | gridfire::FileDefinedEngineView | virtual |
| getNetworkReactions() const override | gridfire::FileDefinedEngineView | virtual |
| getNetworkSpecies() const override | gridfire::FileDefinedEngineView | virtual |
| getScreeningModel() const override | gridfire::FileDefinedEngineView | virtual |
| getSpeciesTimescales(const std::vector< double > &Y_defined, const double T9, const double rho) const override | gridfire::FileDefinedEngineView | virtual |
| getStoichiometryMatrixEntry(const int speciesIndex_defined, const int reactionIndex_defined) const override | gridfire::FileDefinedEngineView | virtual |
| LogManager typedef | gridfire::FileDefinedEngineView | private |
| m_activeReactions | gridfire::FileDefinedEngineView | private |
| m_activeSpecies | gridfire::FileDefinedEngineView | private |
| m_baseEngine | gridfire::FileDefinedEngineView | private |
| m_config | gridfire::FileDefinedEngineView | private |
| m_fileName | gridfire::FileDefinedEngineView | private |
| m_isStale | gridfire::FileDefinedEngineView | private |
| m_logger | gridfire::FileDefinedEngineView | private |
| m_parser | gridfire::FileDefinedEngineView | private |
| m_reactionIndexMap | gridfire::FileDefinedEngineView | private |
| m_speciesIndexMap | gridfire::FileDefinedEngineView | private |
| mapFullToView(const std::vector< double > &full) const | gridfire::FileDefinedEngineView | private |
| mapViewToFull(const std::vector< double > &defined) const | gridfire::FileDefinedEngineView | private |
| mapViewToFullReactionIndex(size_t definedReactionIndex) const | gridfire::FileDefinedEngineView | private |
| mapViewToFullSpeciesIndex(size_t definedSpeciesIndex) const | gridfire::FileDefinedEngineView | private |
| setNetworkFile(const std::string &fileName) | gridfire::FileDefinedEngineView | |
| setScreeningModel(screening::ScreeningType model) override | gridfire::FileDefinedEngineView | virtual |
| update(const NetIn &netIn) override | gridfire::FileDefinedEngineView | virtual |
| validateNetworkState() const | gridfire::FileDefinedEngineView | private |
| ~Engine()=default | gridfire::Engine | virtual |
| ~EngineView()=default | gridfire::EngineView< DynamicEngine > | virtual |