Here is a list of all functions with links to the classes they belong to:

- a -

• AdaptiveEngineView() : gridfire::AdaptiveEngineView
• add_reaction() : gridfire::reaction::LogicalReaction, gridfire::reaction::ReactionSet
• all_species() : gridfire::reaction::Reaction
• Approx8Network() : gridfire::approx8::Approx8Network

- b -

• begin() : gridfire::reaction::LogicalReaction, gridfire::reaction::LogicalReactionSet, gridfire::reaction::ReactionSet

- c -

• calculate_rate() : gridfire::reaction::LogicalReaction, gridfire::reaction::Reaction
• calculateAllDerivatives() : gridfire::GraphEngine
• calculateMolarReactionFlow() : gridfire::AdaptiveEngineView, gridfire::DynamicEngine, gridfire::GraphEngine
• calculateRHSAndEnergy() : gridfire::AdaptiveEngineView, gridfire::Engine, gridfire::GraphEngine
• calculateSteadyStateAbundances() : gridfire::solver::QSENetworkSolver
• chapter() : gridfire::reaction::Reaction
• clear() : gridfire::reaction::ReactionSet
• collectNetworkSpecies() : gridfire::GraphEngine
• constructReactionIndexMap() : gridfire::AdaptiveEngineView
• constructSpeciesIndexMap() : gridfire::AdaptiveEngineView
• contains() : gridfire::reaction::Reaction, gridfire::reaction::ReactionSet
• contains_product() : gridfire::reaction::Reaction, gridfire::reaction::ReactionSet
• contains_reactant() : gridfire::reaction::Reaction, gridfire::reaction::ReactionSet
• contains_species() : gridfire::reaction::ReactionSet
• convert_netIn() : gridfire::approx8::Approx8Network

- d -

• df() : gridfire::solver::QSENetworkSolver::EigenFunctor< T >

- e -

• EigenFunctor() : gridfire::solver::QSENetworkSolver::EigenFunctor< T >
• end() : gridfire::reaction::LogicalReaction, gridfire::reaction::LogicalReactionSet, gridfire::reaction::ReactionSet
• evaluate() : gridfire::approx8::Approx8Network, gridfire::Network, gridfire::solver::DirectNetworkSolver, gridfire::solver::NetworkSolverStrategy< EngineT >, gridfire::solver::QSENetworkSolver
• excess_energy() : gridfire::reaction::Reaction
• exportToCSV() : gridfire::GraphEngine
• exportToDot() : gridfire::GraphEngine

- g -

• generateJacobianMatrix() : gridfire::AdaptiveEngineView, gridfire::DynamicEngine, gridfire::GraphEngine
• generateStoichiometryMatrix() : gridfire::AdaptiveEngineView, gridfire::DynamicEngine, gridfire::GraphEngine
• getBaseEngine() : gridfire::AdaptiveEngineView, gridfire::EngineView< EngineT >
• getFormat() : gridfire::Network
• getJacobianMatrixEntry() : gridfire::AdaptiveEngineView, gridfire::DynamicEngine, gridfire::GraphEngine
• getNetReactionStoichiometry() : gridfire::GraphEngine
• getNetworkReactions() : gridfire::AdaptiveEngineView, gridfire::DynamicEngine, gridfire::GraphEngine
• getNetworkSpecies() : gridfire::AdaptiveEngineView, gridfire::Engine, gridfire::GraphEngine
• getSpeciesTimescales() : gridfire::AdaptiveEngineView, gridfire::DynamicEngine, gridfire::GraphEngine
• getStoichiometryMatrixEntry() : gridfire::AdaptiveEngineView, gridfire::DynamicEngine, gridfire::GraphEngine
• GraphEngine() : gridfire::GraphEngine

- h -

• hash() : gridfire::reaction::Reaction, gridfire::reaction::ReactionSet

- i -

• id() : gridfire::reaction::Reaction
• initializeNetworkWithShortIgnition() : gridfire::solver::QSENetworkSolver
• involvesSpecies() : gridfire::GraphEngine
• is_reverse() : gridfire::reaction::Reaction
• isStiff() : gridfire::approx8::Approx8Network, gridfire::Network

- j -

• JacobianFunctor() : gridfire::solver::DirectNetworkSolver::JacobianFunctor, gridfire::solver::QSENetworkSolver::JacobianFunctor

- l -

• LogicalReaction() : gridfire::reaction::LogicalReaction
• LogicalReactionSet() : gridfire::reaction::LogicalReactionSet

- m -

• mapCulledToFull() : gridfire::AdaptiveEngineView
• mapCulledToFullReactionIndex() : gridfire::AdaptiveEngineView
• mapCulledToFullSpeciesIndex() : gridfire::AdaptiveEngineView
• mapFullToCulled() : gridfire::AdaptiveEngineView
• MolarAbundance() : gridfire::NetIn

- n -

• Network() : gridfire::Network
• NetworkSolverStrategy() : gridfire::solver::NetworkSolverStrategy< EngineT >
• num_species() : gridfire::reaction::Reaction

- o -

• operator!=() : gridfire::reaction::Reaction, gridfire::reaction::ReactionSet
• operator()() : gridfire::approx8::Jacobian, gridfire::approx8::ODE, gridfire::solver::DirectNetworkSolver::JacobianFunctor, gridfire::solver::DirectNetworkSolver::RHSFunctor, gridfire::solver::QSENetworkSolver::EigenFunctor< T >, gridfire::solver::QSENetworkSolver::JacobianFunctor, gridfire::solver::QSENetworkSolver::RHSFunctor, std::hash< gridfire::reaction::Reaction >, std::hash< gridfire::reaction::ReactionSet >
• operator=() : gridfire::reaction::ReactionSet
• operator==() : gridfire::reaction::Reaction, gridfire::reaction::ReactionSet
• operator[]() : gridfire::reaction::LogicalReactionSet, gridfire::reaction::ReactionSet

- p -

• packSpeciesTypeIndexVectors() : gridfire::solver::QSENetworkSolver
• peName() : gridfire::reaction::Reaction
• populateReactionIDMap() : gridfire::GraphEngine
• populateSpeciesToIndexMap() : gridfire::GraphEngine
• product_species() : gridfire::reaction::Reaction
• products() : gridfire::reaction::Reaction

- q -

• qValue() : gridfire::reaction::Reaction

- r -

• rateCoefficients() : gridfire::reaction::Reaction
• reactant_species() : gridfire::reaction::Reaction
• reactants() : gridfire::reaction::Reaction
• Reaction() : gridfire::reaction::Reaction
• ReactionSet() : gridfire::reaction::ReactionSet
• recordADTape() : gridfire::GraphEngine
• remove_reaction() : gridfire::reaction::ReactionSet
• reserveJacobianMatrix() : gridfire::GraphEngine
• RHSFunctor() : gridfire::solver::DirectNetworkSolver::RHSFunctor, gridfire::solver::QSENetworkSolver::RHSFunctor

- s -

• setFormat() : gridfire::Network
• setStiff() : gridfire::approx8::Approx8Network, gridfire::Network
• shouldUpdateView() : gridfire::solver::QSENetworkSolver
• size() : gridfire::reaction::LogicalReaction, gridfire::reaction::LogicalReactionSet, gridfire::reaction::ReactionSet
• sourceLabel() : gridfire::reaction::Reaction
• sources() : gridfire::reaction::LogicalReaction
• stoichiometry() : gridfire::reaction::Reaction
• syncInternalMaps() : gridfire::GraphEngine

- u -

• update() : gridfire::AdaptiveEngineView

- v -

• validateComposition() : gridfire::GraphEngine
• validateConservation() : gridfire::GraphEngine
• validateState() : gridfire::AdaptiveEngineView

- ~ -

• ~Engine() : gridfire::Engine
• ~EngineView() : gridfire::EngineView< EngineT >
• ~Network() : gridfire::Network
• ~NetworkSolverStrategy() : gridfire::solver::NetworkSolverStrategy< EngineT >
• ~Reaction() : gridfire::reaction::Reaction
• ~ReactionSet() : gridfire::reaction::ReactionSet