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• 80a4e12324 docs(.gitignore): added json Emily Boudreaux 2025-11-19 07:40:55 -05:00
• 80dba50330 perf(EigenFunctor): Jacobian Cachine Emily Boudreaux 2025-11-19 07:17:57 -05:00
• 90629992d3 feat(trigger): min convergence failure bound Emily Boudreaux 2025-11-19 07:17:13 -05:00
• d5d767a21c refactor(misc): removed debugging output Emily Boudreaux 2025-11-18 08:25:17 -05:00
• 05c49d8dcf refactor(src): small refactoring changes to clean up code prior to PR Emily Boudreaux 2025-11-18 08:24:19 -05:00
• 92085dca4e feat(log_view): small web app to view fourdst logs Emily Boudreaux 2025-11-18 08:23:04 -05:00
• dfae8073bd log(CVODE_solver_strategy): Added new logging Emily Boudreaux 2025-11-18 08:16:33 -05:00
• 8b1b7c3034 feat(MultiscalePartitioningEngineView): New check for log abundance normalized flow Emily Boudreaux 2025-11-18 08:15:34 -05:00
• 47c446a0a2 fix(engine_multiscale): Eigen status Emily Boudreaux 2025-11-15 09:08:24 -05:00
• 3f55676068 refactor(CVODE solver): log_step_diagnostic signature change Emily Boudreaux 2025-11-15 09:08:05 -05:00
• b65626ca20 feat(NetworkJacobian): Rank caching, regularization, and CSV export Emily Boudreaux 2025-11-15 09:05:41 -05:00
• 4a404f6e12 feat(diagnostics) Emily Boudreaux 2025-11-15 09:02:08 -05:00
• b5d76e3728 feat(jacobian): Added regularization Emily Boudreaux 2025-11-14 18:49:29 -05:00
• 2ed629e0bf feat(Table): Added table class for simpler logging Emily Boudreaux 2025-11-14 10:55:38 -05:00
• 5fd42db394 feat(priming): Priming now uses solver to initialize species abundances Emily Boudreaux 2025-11-14 10:55:03 -05:00
• a9ef20f664 feat(policy network stack): Policies can now return the network stack Emily Boudreaux 2025-11-14 10:53:38 -05:00
• 9417b79a32 feat(Jacobian): Jacobian generation is now stateless. Emily Boudreaux 2025-11-14 10:51:40 -05:00
• 1500f863b6 fix(Reaction): resolved bug which prevented counting number of reactants and products properly Emily Boudreaux 2025-11-14 10:45:45 -05:00
• 3335898979 feat(reaction_contribution_dashboard): added small web app to explore reaction contributions over time Emily Boudreaux 2025-11-12 16:57:24 -05:00
• 81cca35130 fix(MultiscalePartitioningEngineView): began work to call the QSE solver every timestep Emily Boudreaux 2025-11-12 16:54:12 -05:00
• 741a11d256 feat(EnginePartitioningTrigger): update trigger Emily Boudreaux 2025-11-10 13:05:24 -05:00
• 8be36b9ce0 refactor(assets): removed old reaclib database from assets Emily Boudreaux 2025-11-10 10:40:43 -05:00
• a7a4a30028 feat(Comoposition-Tracking): updated GridFire to use new, molar-abundance based, version of libcomposition (v2.0.6) Emily Boudreaux 2025-11-10 10:40:03 -05:00
• 534a44448b feat(policy): updateed policy system and added new reaction chains Emily Boudreaux 2025-11-06 09:18:23 -05:00
• dbb6934fe6 docs(Doxygen): updated styling of inheritence to use dot for higher resolution Emily Boudreaux 2025-11-06 09:17:01 -05:00
• d7237e7367 docs(docs): rebuilt Emily Boudreaux 2025-11-06 09:16:40 -05:00
• ba306523d6 docs(docs): rebuilt Emily Boudreaux 2025-11-05 18:38:07 -05:00
• 18d289da7e docs(policy): added doxygen docs to policy system Emily Boudreaux 2025-11-05 18:37:31 -05:00
• 9fdbb57996 feat(policy): began addition of robust policy system Emily Boudreaux 2025-11-05 12:48:08 -05:00
• 9bc6e9b0d4 feat(io): added ability to export the rate calculations of any engine to a python file Emily Boudreaux 2025-11-05 09:21:52 -05:00
• 7364eaafbd test(sandbox): some work on sandbox tests Emily Boudreaux 2025-11-04 14:04:54 -05:00
• 77e6a918a5 docs(docs): rebuilt docs Emily Boudreaux 2025-11-04 14:04:26 -05:00
• e87206a4a3 docs(readme): updated readme to v0.7.0-alpha Emily Boudreaux 2025-11-04 14:03:46 -05:00
• d7e9597643 fix(python/solver): fidxed any cast issue with set_callback and moved initialization of solver context to before set callback Emily Boudreaux 2025-11-04 13:24:29 -05:00
• 72a3f5bf4c feat(triggers): added ConvergenceFailureTrigger Emily Boudreaux 2025-11-04 13:22:57 -05:00
• 7f19143ff6 docs(construction): documented current default construction behavior Emily Boudreaux 2025-11-04 13:20:46 -05:00
• 3c80ccc77f fix(python): added temporary patch to let python bindings work on mac Emily Boudreaux 2025-11-03 15:10:03 -05:00
• 0adc340767 fix(construction): removed std::optional arguments for weakRateInterpolator Emily Boudreaux 2025-11-03 09:43:36 -05:00
• 70ebe151ba fix(gcc-builds): fixed signedness warnings on gcc builds Emily Boudreaux 2025-11-03 08:53:56 -05:00
• 86d7a283a1 feat(GraphEngine): More robust reaction type selection at network construction Emily Boudreaux 2025-11-03 08:38:21 -05:00
• 56f9342052 fix(AtomicWeakRate): added bool overrides for sparsity calculations Emily Boudreaux 2025-10-31 07:38:04 -04:00
• 1af54132b8 fix(construction): added reaclib_reaction_is_weak call Emily Boudreaux 2025-10-31 07:08:54 -04:00
• c40dd9d0f7 fix(network-construction): added check to reject reaclib weak reactions Emily Boudreaux 2025-10-30 15:30:55 -04:00
• 6088fb9c12 test(graphnet_sandbox): updated graphnet sandbox to test full network stack Emily Boudreaux 2025-10-30 15:06:59 -04:00
• 7fded59814 fix(python-bindings): Updated python bindings to new interface Emily Boudreaux 2025-10-30 15:05:08 -04:00
• 23df87f915 fix(graph_engine): fixed major bug with jacobian sparsity Emily Boudreaux 2025-10-29 14:47:11 -04:00
• 66b2471c13 fix(LogicalReaclibReaction): fixed bug where reaclib reverse reactions were being included in forward reaction sets erroneously Emily Boudreaux 2025-10-28 07:35:38 -04:00
• c94740f08f fix(CVODE_solver_strategy): solved a bug wherein mass fractions were not being properly computed from molar abundances. Emily Boudreaux 2025-10-26 15:15:03 -04:00
• 3fac6390e6 perf(graph_engine): refactored recordEpsTape to reduce repeated work Emily Boudreaux 2025-10-24 14:47:21 -04:00
• 98db2b1d43 perf(graph_engine): finished sparsity system for jacobian, major preformance win, roughly 20x faster Emily Boudreaux 2025-10-24 11:17:22 -04:00
• 0581f69c48 perf(engine_multiscale): performance enhancments due to improved hashing, locality, and data structure optimization Emily Boudreaux 2025-10-22 15:08:49 -04:00
• b20d3467fa build(libcomposition): version bump for fourdst to bring in libcomposition v1.9.1 whith major preformance enhancments Emily Boudreaux 2025-10-22 15:06:11 -04:00
• ced29d2f63 fix(engine_multiscale): resolved bug which prevented proper equilibrium abundances from being found Emily Boudreaux 2025-10-22 09:54:10 -04:00
• 3b8a0a1f33 fix(engine_multiscale): resolved a major species index ordering bug Emily Boudreaux 2025-10-14 13:37:48 -04:00
• 408f6d83a2 build(fourdst): version bump v0.8.2 -> v0.8.3 Emily Boudreaux 2025-10-12 10:29:41 -04:00
• 25393f2470 refactor(engine_multiscale): removed debug output Emily Boudreaux 2025-10-12 07:58:12 -04:00
• bc666ff783 docs(engine_multiscale): improved error message when Eigen failes to converge to a solution for QSE solver Emily Boudreaux 2025-10-12 07:52:30 -04:00
• 2f1077c02d fix(weakRates): major progress in resolving bugs Emily Boudreaux 2025-10-10 09:12:40 -04:00
• 13e2ea9ffa feat(weak-reactions): brought weak reaction code up to a point where it will compile (NOT YET TESTED) Emily Boudreaux 2025-10-08 11:17:35 -04:00
• 274c566726 docs(docs): rebuilt docs with loads more detail for triggers and weak reactions Emily Boudreaux 2025-10-08 11:17:09 -04:00
• 8a0b5b2c36 feat(weak): major weak rate progress Emily Boudreaux 2025-10-07 15:16:03 -04:00
• 4f1c260444 feat(trigger): added working robust repartitioning trigger system Emily Boudreaux 2025-09-29 13:35:48 -04:00
• 4c91f8c525 feat(CVODE_Solver_Strategy): added non negative constraint to CVODE based abundance solver Emily Boudreaux 2025-09-22 11:15:14 -04:00
• 813e62bdd6 feat(dynamic-engine): added derivitves for energy generation rate. dε/dT and dε/dρ have been added to NetOut and computed with auto diff Emily Boudreaux 2025-09-19 15:14:46 -04:00
• ed1c5a1ac7 feat(solver): added CVODE solver from SUNDIALS Emily Boudreaux 2025-08-15 12:11:32 -04:00
• 0b77f2e269 refactor(reaction): refactored to an abstract reaction class in prep for weak reactions Emily Boudreaux 2025-08-14 13:33:46 -04:00
• d920a55ba6 docs(readme): added toc Emily Boudreaux 2025-08-05 15:23:04 -04:00
• de582b938a docs(docs): added workflow page Emily Boudreaux 2025-08-01 05:19:00 -04:00
• a3ccd5e730 docs(readme): spelling correction Emily Boudreaux 2025-07-31 18:10:13 -04:00
• 3488e4d039 Merge pull request #4 from tboudreaux/feature/observerCallback Emily Boudreaux 2025-07-31 15:41:53 -04:00
• b0c1daada4 docs(docs): added more callback docs Emily Boudreaux 2025-07-31 15:41:27 -04:00
• 24049b2658 feat(solver): added callback functions to solver in C++ and python Emily Boudreaux 2025-07-31 15:04:57 -04:00
• 5b74155477 build(wheels): added wheel generation scripts and social logo Emily Boudreaux 2025-07-31 12:02:10 -04:00
• 7373ca2f9a docs(docs): updated index.html and readme Emily Boudreaux 2025-07-31 11:10:02 -04:00
• 63265a2dc3 docs(docs): rebuilt Emily Boudreaux 2025-07-31 10:54:31 -04:00
• 2aaeb6440e docs(readme): added pip instructions Emily Boudreaux 2025-07-30 15:15:37 -04:00
• cd60ae5c1e docs(docs): rebuild with more usage examples Emily Boudreaux 2025-07-30 15:12:46 -04:00
• 24870ffcbc Merge pull request #3 from tboudreaux/feature/QSE Emily Boudreaux 2025-07-29 15:43:05 -04:00
• a6a5ff5f08 build(install): reordered options Emily Boudreaux 2025-07-29 15:25:50 -04:00
• 1fde046ccd build(install.sh): added better venv handling for meson cmd Emily M. Boudreaux 2025-07-29 14:36:23 -04:00
• 443f9e6888 build(install): added venv python managment Emily Boudreaux 2025-07-29 13:44:43 -04:00
• f3cabfc191 build(install.sh): added check to boost after install deps Emily Boudreaux 2025-07-29 12:32:22 -04:00
• 368656e78c build(install.sh): updaterd boost version to 1.83.0 Emily Boudreaux 2025-07-29 12:29:02 -04:00
• 1e11533ba9 build(install.sh): added prompt_yes_or_no back Emily Boudreaux 2025-07-29 12:25:42 -04:00
• 5d516c2544 build(install.sh): made boost check more preformant Emily Boudreaux 2025-07-29 12:23:43 -04:00
• 5181dda06e build(install.sh): added more docs about boost and made check only happen once Emily Boudreaux 2025-07-29 11:46:50 -04:00
• 7567b7b895 build(install.sh): minor logic fix Emily Boudreaux 2025-07-29 11:41:58 -04:00
• 8434a55668 build(install.sh): added more robust boost tests Emily Boudreaux 2025-07-29 11:40:01 -04:00
• ebc9a50112 build(install): added more options and save an d load Emily Boudreaux 2025-07-29 11:22:39 -04:00
• 7ceb997b7d build(installer): added compile version checking Emily Boudreaux 2025-07-29 10:54:49 -04:00
• 8318a07aec build(install.sh): added meson-python Emily Boudreaux 2025-07-29 09:44:29 -04:00
• 89d9472080 build(installed): added more options and better tui mode Emily Boudreaux 2025-07-29 09:25:44 -04:00
• f5328785a8 build(install.sh): added auto installer Emily Boudreaux 2025-07-29 09:05:47 -04:00
• 2c6a8d18a7 build(fourdst/libconfig): version bump to yaml-cpp with cstdint applied Emily Boudreaux 2025-07-29 08:50:28 -04:00
• 9ae9236a80 build(pybind11): added wrap file Emily Boudreaux 2025-07-29 08:31:50 -04:00
• 90826e5053 build(subprojects): removed recursive wrap files Emily Boudreaux 2025-07-29 08:28:42 -04:00
• a9c4a2faff build(boost): added auto call to boost dep script Emily Boudreaux 2025-07-29 08:22:31 -04:00
• e3d7bed39c test(reverse-rates): testing reverse rates Emily Boudreaux 2025-07-29 07:49:17 -04:00
• 2d9216600f feat(reverse-rates): fixed unit error in reverse rate calculation Emily Boudreaux 2025-07-29 07:49:01 -04:00
• ba9b3e2392 docs(docs): asdded and cleaned up docs Emily Boudreaux 2025-07-24 11:10:45 -04:00