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base: tboudreaux:3b9a6eba5a1f782e7fab7215016d3bedbded5c78
Branches Tags
tboudreaux:main tboudreaux:perf/coloring tboudreaux:perf/openMP
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compare: tboudreaux:main
Branches Tags
tboudreaux:main tboudreaux:perf/coloring tboudreaux:perf/openMP

8 Commits
3b9a6eba5a ... main

Author SHA1 Message Date
Emily Boudreaux
ac0dea2755 fix(gf_get_compiler_flags): fixed bug in getting gridfire compiler flags 
also added command line utilities and rebuilt docs
 2026-06-14 08:36:52 -04:00
Emily Boudreaux
6f85eb6b2c fix(wheels): system to continue if wheel build fails 2026-06-13 10:49:16 -04:00
Emily Boudreaux
6bad4415b9 fix(omp): upped CppAD max num threads to 512 
Also added more explicit error handeling to ensure that users know what to do when the thread count exceeds the compiled maximum
 2026-06-13 07:16:50 -04:00
Emily Boudreaux
5ea884897d fix(dl): added dl as a dep 
older manylinux systems need dl brought in explicitly
 2026-06-12 16:51:55 -04:00
Emily Boudreaux
0759ff6d9c docs(version): first gridfire release version (v1.0.0) 
This version is the version which is scientifically published and which includes the lower friction install system with pip
 2026-06-12 16:38:07 -04:00
Emily Boudreaux
2fca1674f8 fix(fourdst): pinned fourdst to v0.10.6 for ABI compatibility 
this version pins pybind11 to v3.0.0
 2026-06-12 16:36:47 -04:00
Emily Boudreaux
5502b0ac80 build(omp): added explicit omp prefix override 
this is useful when building omp compatible wheels on mac which bundle libomp with them
 2026-06-12 14:49:19 -04:00
Emily Boudreaux
61cd7359d4 build(python): gridfire uses fourdst wheel in python mode 2026-06-12 14:30:59 -04:00
1625 changed files with 217840 additions and 196610 deletions
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2
Doxyfile
View File

@@ -48,7 +48,7 @@ PROJECT_NAME = GridFire
# could be handy for archiving the generated documentation or if some version # could be handy for archiving the generated documentation or if some version
# control system is used. # control system is used.
PROJECT_NUMBER = v0.7.6rc4.2 PROJECT_NUMBER = v1.0.2
# Using the PROJECT_BRIEF tag one can provide an optional one line description # Using the PROJECT_BRIEF tag one can provide an optional one line description
# for a project that appears at the top of each page and should give viewers a # for a project that appears at the top of each page and should give viewers a

17
build-check/CPPC/meson.build
View File

@@ -61,7 +61,6 @@ version_sufficient = required_min == '' ? true : compiler_version.version_compar
# --- failure analysis and reporting ---------------------------------------- # --- failure analysis and reporting ----------------------------------------
if toolchain_functional and not version_sufficient if toolchain_functional and not version_sufficient
# Works in practice; don't break a functioning setup over a number.
warning(toolchain_desc + ' is below the minimum GridFire tests against (' warning(toolchain_desc + ' is below the minimum GridFire tests against ('
+ required_min + '), but all C++23 capability probes passed. ' + required_min + '), but all C++23 capability probes passed. '
+ 'Proceeding; if you hit compiler errors deep in the build, ' + 'Proceeding; if you hit compiler errors deep in the build, '
@@ -69,7 +68,6 @@ if toolchain_functional and not version_sufficient
endif endif
if not toolchain_functional if not toolchain_functional
# 1) Name the failure precisely.
failure_detail = '' failure_detail = ''
if not have_print_hdr if not have_print_hdr
failure_detail += '\n * C++ standard library header <print> not found.' failure_detail += '\n * C++ standard library header <print> not found.'
@@ -83,14 +81,11 @@ if not toolchain_functional
if not version_sufficient if not version_sufficient
failure_detail += '\n * ' + toolchain_desc + ' is below the required minimum (' + required_min + ').' failure_detail += '\n * ' + toolchain_desc + ' is below the required minimum (' + required_min + ').'
elif compiler_id == 'clang' and not is_apple_clang elif compiler_id == 'clang' and not is_apple_clang
# New-enough clang but probes failed: almost always the C++ stdlib
# underneath it, not clang itself.
failure_detail += ('\n * clang itself is new enough; on Linux clang uses the system ' failure_detail += ('\n * clang itself is new enough; on Linux clang uses the system '
+ 'libstdc++, so the GNU C++ runtime is likely too old. Install GCC >= ' + 'libstdc++, so the GNU C++ runtime is likely too old. Install GCC >= '
+ gridfire_gcc_min + ' (clang will pick up its libstdc++), or use -Dcpp_args=-stdlib=libc++ with libc++ >= 17 installed.') + gridfire_gcc_min + ' (clang will pick up its libstdc++), or use -Dcpp_args=-stdlib=libc++ with libc++ >= 17 installed.')
endif endif
# 2) Search for a suitable already-installed alternate.
candidate_names = [] candidate_names = []
if compiler_id == 'gcc' if compiler_id == 'gcc'
candidate_names += ['g++-16', 'g++-15', 'g++-14', 'clang++-21', 'clang++-20', 'clang++-19', 'clang++-18', 'clang++-17'] candidate_names += ['g++-16', 'g++-15', 'g++-14', 'clang++-21', 'clang++-20', 'clang++-19', 'clang++-18', 'clang++-17']
@@ -110,7 +105,6 @@ if not toolchain_functional
p = find_program(cand, required: false) p = find_program(cand, required: false)
if p.found() if p.found()
cand_ver = p.version() cand_ver = p.version()
# Decide the applicable minimum from the candidate's family.
cand_min = cand.contains('clang') ? gridfire_clang_min : gridfire_gcc_min cand_min = cand.contains('clang') ? gridfire_clang_min : gridfire_gcc_min
if cand_ver != 'unknown' and cand_ver.version_compare('>=' + cand_min) if cand_ver != 'unknown' and cand_ver.version_compare('>=' + cand_min)
candidates_report += '\n [OK] ' + p.full_path() + ' (version ' + cand_ver + ')' candidates_report += '\n [OK] ' + p.full_path() + ' (version ' + cand_ver + ')'
@@ -123,7 +117,6 @@ if not toolchain_functional
endif endif
endforeach endforeach
# 3) OS-specific install guidance.
os_help = '' os_help = ''
if host_machine.system() == 'darwin' if host_machine.system() == 'darwin'
os_help = ''' os_help = '''
@@ -160,7 +153,6 @@ How to get a suitable compiler on Linux:''' + distro_hint + '''
os_help = '\nInstall GCC >= ' + gridfire_gcc_min + ' or LLVM clang >= ' + gridfire_clang_min + ' for your platform.' os_help = '\nInstall GCC >= ' + gridfire_gcc_min + ' or LLVM clang >= ' + gridfire_clang_min + ' for your platform.'
endif endif
# 4) Assemble the verdict.
if suitable_cxx != '' if suitable_cxx != ''
action = ('\nA suitable compiler IS already installed. Meson cannot switch compilers ' action = ('\nA suitable compiler IS already installed. Meson cannot switch compilers '
+ 'after configuration starts, so re-run setup pointing at it:\n\n' + 'after configuration starts, so re-run setup pointing at it:\n\n'
@@ -181,18 +173,9 @@ How to get a suitable compiler on Linux:''' + distro_hint + '''
+ action) + action)
endif endif
# --- everything below unchanged from the original check ---------------------
# For Eigen
add_project_arguments('-Wno-deprecated-declarations', language: 'cpp') add_project_arguments('-Wno-deprecated-declarations', language: 'cpp')
if get_option('build_python')
message('enabling hidden visibility for C++ symbols when building Python extension. This reduces the size of the resulting shared library.')
add_project_arguments('-fvisibility=hidden', language: 'cpp')
else
message('enabling default visibility for C++ symbols')
add_project_arguments('-fvisibility=default', language: 'cpp') add_project_arguments('-fvisibility=default', language: 'cpp')
endif
if get_option('openmp_support') if get_option('openmp_support')
gridfire_args += ['-DGF_USE_OPENMP'] gridfire_args += ['-DGF_USE_OPENMP']

10
build-config/cppad/meson.build
View File

@@ -2,7 +2,7 @@ cppad_cmake_options = cmake.subproject_options()
cppad_cmake_options.add_cmake_defines({ cppad_cmake_options.add_cmake_defines({
'cppad_static_lib': 'true', 'cppad_static_lib': 'true',
'cpp_mas_num_threads': '10', 'cppad_max_num_threads': '512',
'cppad_debug_and_release': 'false', 'cppad_debug_and_release': 'false',
'include_doc': 'false', 'include_doc': 'false',
'CMAKE_POSITION_INDEPENDENT_CODE': true 'CMAKE_POSITION_INDEPENDENT_CODE': true
@@ -29,8 +29,14 @@ libcppad_static = static_library(
install: false install: false
) )
dl_dep = dependency('dl', required: false)
if not dl_dep.found()
dl_dep = cpp.find_library('dl', required: false)
endif
cppad_dep = declare_dependency( cppad_dep = declare_dependency(
include_directories: cppad_incs include_directories: cppad_incs,
dependencies: dl_dep.found() ? [dl_dep] : [],
) )
message('Staging vendored CppAD headers for ' + gridfire_vendor_includedir) message('Staging vendored CppAD headers for ' + gridfire_vendor_includedir)

74
build-config/fourdst/meson.build
View File

@@ -1,3 +1,36 @@
if get_option('build_python')
fourdst_inc_probe = run_command(py_installation, '-c',
'import fourdst; print("\\n".join(fourdst.get_include_dirs()))',
check: false)
if fourdst_inc_probe.returncode() != 0
error('Could not interrogate the fourdst wheel:\n' + fourdst_inc_probe.stderr()
+ '\nIs fourdst installed in the build environment?')
endif
fourdst_inc_dirs = fourdst_inc_probe.stdout().strip().split('\n')
fourdst_lib_probe = run_command(py_installation, '-c',
'import fourdst; print("\\n".join(fourdst.get_lib_dirs()))',
check: false)
if fourdst_lib_probe.returncode() != 0
error('Could not interrogate the fourdst wheel:\n' + fourdst_lib_probe.stderr())
endif
fourdst_lib_dirs = fourdst_lib_probe.stdout().strip().split('\n')
fourdst_inc_args = []
foreach d : fourdst_inc_dirs
fourdst_inc_args += ['-I' + d]
endforeach
cpp = meson.get_compiler('cpp')
comp_lib = cpp.find_library('composition', dirs: fourdst_lib_dirs)
log_lib = cpp.find_library('logging', dirs: fourdst_lib_dirs)
const_lib = cpp.find_library('const', dirs: fourdst_lib_dirs)
refl_lib = cpp.find_library('reflect_cpp', dirs: fourdst_lib_dirs)
composition_dep = declare_dependency(compile_args: fourdst_inc_args, dependencies: [comp_lib, refl_lib])
log_dep = declare_dependency(compile_args: fourdst_inc_args, dependencies: log_lib)
const_dep = declare_dependency(compile_args: fourdst_inc_args, dependencies: const_lib)
config_dep = declare_dependency(compile_args: fourdst_inc_args) # header-only libconfig
else
fourdst_build_lib_all = true fourdst_build_lib_all = true
if not get_option('plugin_support') if not get_option('plugin_support')
fourdst_build_lib_all=false fourdst_build_lib_all=false
@@ -38,45 +71,4 @@ if get_option('plugin_support')
warning('Including plugin library from fourdst. Note this will bring in minizip-ng and openssl, which can cause build issues with cross compilation due to their complexity.') warning('Including plugin library from fourdst. Note this will bring in minizip-ng and openssl, which can cause build issues with cross compilation due to their complexity.')
libplugin = fourdst_sp.get_variable('libplugin') libplugin = fourdst_sp.get_variable('libplugin')
endif endif
if get_option('build_python')
sp_root = meson.project_source_root() / 'subprojects'
fourdst_header_trees = [
['config',
sp_root / 'libconfig' / 'src' / 'config' / 'include' / 'fourdst' / 'config',
gridfire_includedir / 'fourdst'],
['composition',
sp_root / 'libcomposition' / 'src' / 'composition' / 'include' / 'fourdst' / 'composition',
gridfire_includedir / 'fourdst'],
['atomic',
sp_root / 'libcomposition' / 'src' / 'composition' / 'include' / 'fourdst' / 'atomic',
gridfire_includedir / 'fourdst'],
['constants',
sp_root / 'libconstants' / 'src' / 'constants' / 'include' / 'fourdst' / 'constants',
gridfire_includedir / 'fourdst'],
['logging',
sp_root / 'liblogging' / 'src' / 'logging' / 'include' / 'fourdst' / 'logging',
gridfire_includedir / 'fourdst'],
['toml++',
sp_root / 'libconfig' / 'build-config' / 'tomlpp' / 'vendor' / 'include' / 'toml++',
gridfire_fourdst_vendor_includedir],
['quill',
sp_root / 'quill' / 'include' / 'quill',
gridfire_fourdst_vendor_includedir],
['CLI',
sp_root / 'CLI11-2.6.1' / 'include' / 'CLI',
gridfire_fourdst_vendor_includedir],
]
foreach t : fourdst_header_trees
custom_target(
'wheel_headers_' + t[0].underscorify(),
command: copytree_cmd + [t[1], '@OUTPUT@'],
output: t[0],
install: true,
install_dir: t[2],
)
endforeach
endif endif

16
build-python/meson.build
View File

@@ -36,28 +36,16 @@ if get_option('build_python')
] ]
if meson.is_cross_build() and host_machine.system() == 'darwin'
py_mod = shared_module(
'_gridfire',
sources: py_sources,
dependencies: gridfire_py_deps,
name_prefix: '',
name_suffix: 'so',
install: true,
install_rpath: gridfire_ext_rpath,
install_dir: py_installation.get_install_dir() + '/gridfire'
)
else
py_mod = py_installation.extension_module( py_mod = py_installation.extension_module(
'_gridfire', '_gridfire',
sources: py_sources, sources: py_sources,
dependencies: gridfire_py_deps, dependencies: gridfire_py_deps,
install: true, install: true,
link_args: gridfire_ext_rpath_args,
build_rpath: gridfire_ext_rpath,
install_rpath: gridfire_ext_rpath, install_rpath: gridfire_ext_rpath,
subdir: 'gridfire', subdir: 'gridfire',
) )
endif
py_installation.install_sources( py_installation.install_sources(
files( files(

22
docs/html/____init_____8py.html
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@@ -29,7 +29,7 @@
<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>
@@ -132,6 +132,22 @@ Functions</h2></td></tr>
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Variables</h2></td></tr> Variables</h2></td></tr>
@@ -141,7 +157,7 @@ Variables</h2></td></tr>
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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
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<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
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<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
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<code>#include &lt;string&gt;</code><br /> <code>#include &lt;string&gt;</code><br />
<code>#include &lt;vector&gt;</code><br /> <code>#include &lt;vector&gt;</code><br />
<code>#include &lt;tuple&gt;</code><br /> <code>#include &lt;tuple&gt;</code><br />
<code>#include &lt;span&gt;</code><br />
<code>#include &lt;optional&gt;</code><br />
<code>#include &lt;cvode/cvode.h&gt;</code><br /> <code>#include &lt;cvode/cvode.h&gt;</code><br />
<code>#include &lt;sundials/sundials_types.h&gt;</code><br /> <code>#include &lt;sundials/sundials_types.h&gt;</code><br />
<code>#include &lt;sundials/sundials_context.h&gt;</code><br /> <code>#include &lt;sundials/sundials_context.h&gt;</code><br />

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<div class="ttc" id="aengine__graph__scratchpad_8h_html"><div class="ttname"><a href="engine__graph__scratchpad_8h.html">engine_graph_scratchpad.h</a></div><div class="ttdoc">Scratchpad implementation for the GraphEngine using CppAD automatic differentiation.</div></div> <div class="ttc" id="aengine__graph__scratchpad_8h_html"><div class="ttname"><a href="engine__graph__scratchpad_8h.html">engine_graph_scratchpad.h</a></div><div class="ttdoc">Scratchpad implementation for the GraphEngine using CppAD automatic differentiation.</div></div>
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<div class="ttc" id="anamespacegridfire_1_1engine_html"><div class="ttname"><a href="namespacegridfire_1_1engine.html">gridfire::engine</a></div><div class="ttdef"><b>Definition</b> dynamic_engine_diagnostics.h:39</div></div> <div class="ttc" id="anamespacegridfire_1_1engine_html"><div class="ttname"><a href="namespacegridfire_1_1engine.html">gridfire::engine</a></div><div class="ttdef"><b>Definition</b> dynamic_engine_diagnostics.h:40</div></div>
<div class="ttc" id="astructgridfire_1_1engine_1_1scratch_1_1_graph_engine_scratch_pad_html"><div class="ttname"><a href="structgridfire_1_1engine_1_1scratch_1_1_graph_engine_scratch_pad.html">gridfire::engine::scratch::GraphEngineScratchPad</a></div><div class="ttdoc">Scratchpad for storing CppAD automatic differentiation state for GraphEngine.</div><div class="ttdef"><b>Definition</b> engine_graph_scratchpad.h:83</div></div> <div class="ttc" id="astructgridfire_1_1engine_1_1scratch_1_1_graph_engine_scratch_pad_html"><div class="ttname"><a href="structgridfire_1_1engine_1_1scratch_1_1_graph_engine_scratch_pad.html">gridfire::engine::scratch::GraphEngineScratchPad</a></div><div class="ttdoc">Scratchpad for storing CppAD automatic differentiation state for GraphEngine.</div><div class="ttdef"><b>Definition</b> engine_graph_scratchpad.h:83</div></div>
</div><!-- fragment --></dd></dl> </div><!-- fragment --></dd></dl>
<dl class="section user"><dt>Thread Safety</dt><dd>The StateBlob class is <b>not thread-safe</b>. Each thread should have its own StateBlob instance. Use clone_structure() to create independent copies for parallel workers. The cloned blob contains deep copies of all enrolled scratchpads.</dd></dl> <dl class="section user"><dt>Thread Safety</dt><dd>The StateBlob class is <b>not thread-safe</b>. Each thread should have its own StateBlob instance. Use clone_structure() to create independent copies for parallel workers. The cloned blob contains deep copies of all enrolled scratchpads.</dd></dl>

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<code>#include &quot;<a class="el" href="reaction_8h.html">gridfire/reaction/reaction.h</a>&quot;</code><br /> <code>#include &quot;<a class="el" href="reaction_8h.html">gridfire/reaction/reaction.h</a>&quot;</code><br />
<code>#include &lt;memory&gt;</code><br /> <code>#include &lt;memory&gt;</code><br />
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<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

2
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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>
@@ -1006,7 +1006,7 @@ These methods return an unfinalized composition which must then be finalized by
<p>This method is intended to be implemented by derived classes to update their internal state based on the provided network conditions. For example, an adaptive engine might use this to re-evaluate which reactions and species are active. For other engines that do not support manually updating, this method might do nothing.</p> <p>This method is intended to be implemented by derived classes to update their internal state based on the provided network conditions. For example, an adaptive engine might use this to re-evaluate which reactions and species are active. For other engines that do not support manually updating, this method might do nothing.</p>
<dl class="section user"><dt>Usage Example:</dt><dd><div class="fragment"><div class="line"><a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a> input = { ... };</div> <dl class="section user"><dt>Usage Example:</dt><dd><div class="fragment"><div class="line"><a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a> input = { ... };</div>
<div class="line">myEngine.update(input);</div> <div class="line">myEngine.update(input);</div>
<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> types.h:27</div></div> <div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> types.h:28</div></div>
</div><!-- fragment --></dd></dl> </div><!-- fragment --></dd></dl>
<dl class="section post"><dt>Postcondition</dt><dd>The internal state of the engine is updated to reflect the new conditions. </dd></dl> <dl class="section post"><dt>Postcondition</dt><dd>The internal state of the engine is updated to reflect the new conditions. </dd></dl>

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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>
@@ -139,8 +139,8 @@ class gridfire::engine::EngineView&lt; EngineT &gt;</div><p>Abstract base class
<div class="line"><span class="keyword">private</span>:</div> <div class="line"><span class="keyword">private</span>:</div>
<div class="line"> DynamicEngine&amp; engine_;</div> <div class="line"> DynamicEngine&amp; engine_;</div>
<div class="line">};</div> <div class="line">};</div>
<div class="ttc" id="aclassgridfire_1_1engine_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1engine_1_1_dynamic_engine.html">gridfire::engine::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> engine_abstract.h:183</div></div> <div class="ttc" id="aclassgridfire_1_1engine_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1engine_1_1_dynamic_engine.html">gridfire::engine::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> engine_abstract.h:185</div></div>
<div class="ttc" id="anamespacegridfire_1_1engine_html"><div class="ttname"><a href="namespacegridfire_1_1engine.html">gridfire::engine</a></div><div class="ttdef"><b>Definition</b> dynamic_engine_diagnostics.h:39</div></div> <div class="ttc" id="anamespacegridfire_1_1engine_html"><div class="ttname"><a href="namespacegridfire_1_1engine.html">gridfire::engine</a></div><div class="ttdef"><b>Definition</b> dynamic_engine_diagnostics.h:40</div></div>
</div><!-- fragment --><dl class="section see"><dt>See also</dt><dd>gridfire::AdaptiveEngineView for a concrete example of dynamic culling. </dd></dl> </div><!-- fragment --><dl class="section see"><dt>See also</dt><dd>gridfire::AdaptiveEngineView for a concrete example of dynamic culling. </dd></dl>
</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2> </div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
<a id="a17d63e853d6efca31064e9147c80d497" name="a17d63e853d6efca31064e9147c80d497"></a> <a id="a17d63e853d6efca31064e9147c80d497" name="a17d63e853d6efca31064e9147c80d497"></a>

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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>
@@ -1698,7 +1698,7 @@ If a species is in the input comp but not in the network </dd></dl>
</dd> </dd>
</dl> </dl>
<p>Example usage: </p><div class="fragment"><div class="line"><a class="code hl_namespace" href="namespacegridfire_1_1engine.html">engine</a>.exportToCSV(<span class="stringliteral">&quot;network.csv&quot;</span>);</div> <p>Example usage: </p><div class="fragment"><div class="line"><a class="code hl_namespace" href="namespacegridfire_1_1engine.html">engine</a>.exportToCSV(<span class="stringliteral">&quot;network.csv&quot;</span>);</div>
<div class="ttc" id="anamespacegridfire_1_1engine_html"><div class="ttname"><a href="namespacegridfire_1_1engine.html">gridfire::engine</a></div><div class="ttdef"><b>Definition</b> dynamic_engine_diagnostics.h:39</div></div> <div class="ttc" id="anamespacegridfire_1_1engine_html"><div class="ttname"><a href="namespacegridfire_1_1engine.html">gridfire::engine</a></div><div class="ttdef"><b>Definition</b> dynamic_engine_diagnostics.h:40</div></div>
</div><!-- fragment --> </div><!-- fragment -->
</div> </div>
</div> </div>

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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

2
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<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>
@@ -316,7 +316,7 @@ Private Attributes</h2></td></tr>
<div class="line"><span class="comment">// The integrator will call calculateRHSAndEnergy, etc. on the multiscaleEngine.</span></div> <div class="line"><span class="comment">// The integrator will call calculateRHSAndEnergy, etc. on the multiscaleEngine.</span></div>
<div class="line"><span class="keyword">auto</span> Y_initial = multiscaleEngine.mapNetInToMolarAbundanceVector({equilibratedComp, ...});</div> <div class="line"><span class="keyword">auto</span> Y_initial = multiscaleEngine.mapNetInToMolarAbundanceVector({equilibratedComp, ...});</div>
<div class="line"><span class="keyword">auto</span> derivatives = multiscaleEngine.calculateRHSAndEnergy(Y_initial, T9, rho);</div> <div class="line"><span class="keyword">auto</span> derivatives = multiscaleEngine.calculateRHSAndEnergy(Y_initial, T9, rho);</div>
<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> types.h:27</div></div> <div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> types.h:28</div></div>
</div><!-- fragment --></dd></dl> </div><!-- fragment --></dd></dl>
<p>&lt;DynamicEngine&gt; </p> <p>&lt;DynamicEngine&gt; </p>
</div><h2 class="groupheader">Member Typedef Documentation</h2> </div><h2 class="groupheader">Member Typedef Documentation</h2>

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