10 Commits

Author	SHA1	Message	Date
Emily Boudreaux	dd03873bc9	fix(GraphNetwork): working on loads of small bugs ... Fized stoichiometry matrix initialization, added penames to reablib reactions, began work on LogicalReaction to sum the contributions of different fitting functions provided by reaclib	2025-06-23 15:18:56 -04:00
Emily Boudreaux	a5639cca58	docs(readme): major readme update	2025-06-21 16:54:23 -04:00
Emily Boudreaux	8bc48b8d19	feat(GridFire): brought gridfire up to where network module in SERiF was before splitting it off	2025-06-21 13:18:38 -04:00
Emily Boudreaux	856ab51b4c	build(CppAD): brought in CppAD for autodiff ... we need an autodiff library at some point (or we need to roll our own but I do not think that makes sense). CppAD is well tested and header only and easy to include. It is also Liscene compatible with GPL v3.0. Here we bring it in as a dependency	2025-06-19 14:51:02 -04:00
Emily Boudreaux	394622df47	feat(python-composition): added composition module interface	2025-04-30 11:41:10 -04:00
Emily Boudreaux	c167357a3b	feat(pybind11): added infra to compile with pybind11	2025-04-30 11:39:36 -04:00
Emily Boudreaux	7327a487b5	build(boost): added greater than to version for boost	2025-03-21 11:56:12 -04:00
Emily Boudreaux	c8fe09a8b5	build(boost): lowered required version	2025-03-21 11:54:33 -04:00
Emily Boudreaux	a42fe4898c	build(boost): incorporated boost into the build system ... all builds should be run with ./mk now	2025-03-21 10:39:34 -04:00
Emily Boudreaux	2d27b119bd	build(quill): added quill as a subproject ... quill provides a robust and very efficient asyncronous and thread safe logging module. I have brought this in to handle logging	2025-02-23 11:25:11 -05:00