diff --git a/Doxyfile b/Doxyfile
index 181e6582..177be146 100644
--- a/Doxyfile
+++ b/Doxyfile
@@ -991,7 +991,7 @@ WARN_LOGFILE =
# spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
# Note: If this tag is empty the current directory is searched.
-INPUT = src docs/static/mainpage.md
+INPUT = src docs/static/mainpage.md docs/static/usage.md
# This tag can be used to specify the character encoding of the source files
# that Doxygen parses. Internally Doxygen uses the UTF-8 encoding. Doxygen uses
diff --git a/README.md b/README.md
index 59f0734c..8f377a41 100644
--- a/README.md
+++ b/README.md
@@ -250,11 +250,29 @@ gridfire::AdaptiveEngineView adaptiveView(baseEngine);
### Python Example
```python
import gridfire
+
+
+from fourdst.composition import Composition
+
+symbols = ["H-1", ...]
+X = [0.708, ...]
+
+comp = Composition()
+comp.registerSymbols(symbols)
+comp.setMassFraction(X)
+comp.finalize(true)
# Initialize GraphEngine with predefined composition
-engine = gridfire.GraphEngine(composition="example_composition")
+engine = gridfire.GraphEngine(comp)
+netIn = gridfire.types.NetIn
+netIn.composition = comp
+netIn.tMax = 1e-3
+netIn.temperature = 1.5e7
+netIn.density = 1.6e2
+netIn.dt0 = 1e-12
+
# Perform one integration step
-engine.step(dt=1e-3)
-print(engine.abundances)
+netOut = engine.evaluate(netIn)
+print(netOut)
```
## Common Workflow Example
@@ -311,4 +329,4 @@ GridFire integrates with and builds upon several key 4D-STAR libraries:
- [libcomposition](https://github.com/4D-STAR/libcomposition) ([docs](https://4d-star.github.io/libcomposition/)): Composition management toolkit.
- [libconfig](https://github.com/4D-STAR/libconfig): Configuration file parsing utilities.
- [liblogging](https://github.com/4D-STAR/liblogging): Flexible logging framework.
-- [libconstants](https://github.com/4D-STAR/libconstants): Physical constants
\ No newline at end of file
+- [libconstants](https://github.com/4D-STAR/libconstants): Physical constants
diff --git a/docs/html/classgridfire_1_1_graph_engine-members.html b/docs/html/classgridfire_1_1_graph_engine-members.html
index 50843fe3..29eca4b0 100644
--- a/docs/html/classgridfire_1_1_graph_engine-members.html
+++ b/docs/html/classgridfire_1_1_graph_engine-members.html
@@ -176,9 +176,8 @@ $(function(){initNavTree('classgridfire_1_1_graph_engine.html',''); initResizabl
setUseReverseReactions (bool useReverse)gridfire::GraphEngine syncInternalMaps ()gridfire::GraphEngine private update (const NetIn &netIn) overridegridfire::GraphEngine virtual validateComposition (const fourdst::composition::Composition &composition, double culling, double T9)gridfire::GraphEngine private validateConservation () constgridfire::GraphEngine private ~Engine ()=defaultgridfire::Engine virtual validateConservation () constgridfire::GraphEngine private ~Engine ()=defaultgridfire::Engine virtual bool validateConservation () const Validates mass and charge conservation across all reactions. void validateComposition (const fourdst::composition::Composition &composition, double culling, double T9) Validates the composition against the current reaction set. StepDerivatives < double > calculateAllDerivativesUsingPrecomputation (const std::vector< double > &Y_in, const std::vector< double > &bare_rates, const std::vector< double > &bare_reverse_rates, double T9, double rho) const template<IsArithmeticOrAD T> See also engine_abstract.h Definition at line 101 of file engine_graph.h .
+Definition at line 100 of file engine_graph.h .
◆ [1/3] Returns StepDerivatives<ADDouble> containing dY/dt and energy generation rate.This method calculates the time derivatives of all species and the specific nuclear energy generation rate for the current state using automatic differentiation.
-Definition at line 616 of file engine_graph.cpp .
+Definition at line 594 of file engine_graph.cpp .
@@ -566,7 +563,7 @@ Private Attributes
Returns StepDerivatives<double> containing dY/dt and energy generation rate.This method calculates the time derivatives of all species and the specific nuclear energy generation rate for the current state using double precision arithmetic.
-Definition at line 608 of file engine_graph.cpp .
+Definition at line 586 of file engine_graph.cpp .
@@ -622,7 +619,7 @@ template<IsArithmeticOrAD T>
Returns StepDerivatives<T> containing dY/dt and energy generation rate.This method calculates the time derivatives of all species and the specific nuclear energy generation rate for the current state.
-Definition at line 745 of file engine_graph.h .
+Definition at line 715 of file engine_graph.h .
@@ -668,7 +665,7 @@ template<IsArithmeticOrAD T>
@@ -724,7 +721,7 @@ template<IsArithmeticOrAD T>
Implements gridfire::DynamicEngine .
-Definition at line 645 of file engine_graph.cpp .
+Definition at line 623 of file engine_graph.cpp .
@@ -786,7 +783,7 @@ template<IsArithmeticOrAD T>
Returns Molar flow rate for the reaction (e.g., mol/g/s). This method computes the net rate at which the given reaction proceeds under the current state.
-Definition at line 826 of file engine_graph.h .
+Definition at line 796 of file engine_graph.h .
@@ -839,7 +836,7 @@ template<IsArithmeticOrAD T>
@@ -870,7 +867,7 @@ template<IsArithmeticOrAD T>
@@ -911,7 +908,7 @@ template<IsArithmeticOrAD T>
@@ -947,7 +944,7 @@ template<IsArithmeticOrAD T>
@@ -1025,7 +1022,7 @@ template<IsArithmeticOrAD T>
@@ -1090,7 +1087,7 @@ template<IsArithmeticOrAD T>
Example usage:
engine.exportToCSV("network.csv" );
Definition at line 810 of file engine_graph.cpp .
+Definition at line 788 of file engine_graph.cpp .
@@ -1125,7 +1122,7 @@ template<IsArithmeticOrAD T>
Example usage:
engine.exportToDot("network.dot" );
Definition at line 762 of file engine_graph.cpp .
+Definition at line 740 of file engine_graph.cpp .
@@ -1175,7 +1172,7 @@ template<IsArithmeticOrAD T>
Implements gridfire::DynamicEngine .
-Definition at line 654 of file engine_graph.cpp .
+Definition at line 632 of file engine_graph.cpp .
@@ -1218,7 +1215,7 @@ template<IsArithmeticOrAD T>
Reimplemented from gridfire::DynamicEngine .
-Definition at line 687 of file engine_graph.cpp .
+Definition at line 665 of file engine_graph.cpp .
@@ -1250,7 +1247,7 @@ template<IsArithmeticOrAD T>
Implements gridfire::DynamicEngine .
-Definition at line 567 of file engine_graph.cpp .
+Definition at line 545 of file engine_graph.cpp .
@@ -1279,7 +1276,7 @@ template<IsArithmeticOrAD T>
Reimplemented from gridfire::DynamicEngine .
-Definition at line 456 of file engine_graph.cpp .
+Definition at line 434 of file engine_graph.cpp .
@@ -1324,7 +1321,7 @@ template<IsArithmeticOrAD T>
Implements gridfire::DynamicEngine .
-Definition at line 744 of file engine_graph.cpp .
+Definition at line 722 of file engine_graph.cpp .
@@ -1360,7 +1357,7 @@ template<IsArithmeticOrAD T>
Returns Map of species to their stoichiometric coefficients. Definition at line 749 of file engine_graph.cpp .
+Definition at line 727 of file engine_graph.cpp .
@@ -1451,7 +1448,7 @@ template<IsArithmeticOrAD T>
@@ -1486,7 +1483,7 @@ template<IsArithmeticOrAD T>
Implements gridfire::DynamicEngine .
-Definition at line 629 of file engine_graph.cpp .
+Definition at line 607 of file engine_graph.cpp .
@@ -1524,7 +1521,7 @@ template<IsArithmeticOrAD T>
Implements gridfire::DynamicEngine .
-Definition at line 883 of file engine_graph.cpp .
+Definition at line 861 of file engine_graph.cpp .
@@ -1553,7 +1550,7 @@ template<IsArithmeticOrAD T>
Implements gridfire::DynamicEngine .
-Definition at line 417 of file engine_graph.cpp .
+Definition at line 395 of file engine_graph.cpp .
@@ -1603,7 +1600,7 @@ template<IsArithmeticOrAD T>
Implements gridfire::DynamicEngine .
-Definition at line 864 of file engine_graph.cpp .
+Definition at line 842 of file engine_graph.cpp .
@@ -1648,7 +1645,7 @@ template<IsArithmeticOrAD T>
Implements gridfire::DynamicEngine .
-Definition at line 755 of file engine_graph.cpp .
+Definition at line 733 of file engine_graph.cpp .
@@ -1711,7 +1708,7 @@ template<IsArithmeticOrAD T>
@@ -1740,7 +1737,7 @@ template<IsArithmeticOrAD T>
Implements gridfire::DynamicEngine .
-Definition at line 920 of file engine_graph.cpp .
+Definition at line 898 of file engine_graph.cpp .
@@ -1767,7 +1764,7 @@ template<IsArithmeticOrAD T>
@@ -1796,7 +1793,7 @@ template<IsArithmeticOrAD T>
Implements gridfire::DynamicEngine .
-Definition at line 421 of file engine_graph.cpp .
+Definition at line 399 of file engine_graph.cpp .
@@ -1883,7 +1880,7 @@ template<IsArithmeticOrAD T>
@@ -1912,7 +1909,7 @@ template<IsArithmeticOrAD T>
Implements gridfire::DynamicEngine .
-Definition at line 429 of file engine_graph.cpp .
+Definition at line 407 of file engine_graph.cpp .
@@ -1945,7 +1942,7 @@ template<IsArithmeticOrAD T>
Reimplemented from gridfire::DynamicEngine .
-Definition at line 460 of file engine_graph.cpp .
+Definition at line 438 of file engine_graph.cpp .
@@ -1981,7 +1978,7 @@ template<IsArithmeticOrAD T>
-Definition at line 924 of file engine_graph.cpp .
+Definition at line 902 of file engine_graph.cpp .
@@ -2059,7 +2056,7 @@ template<IsArithmeticOrAD T>
@@ -2101,7 +2098,7 @@ template<IsArithmeticOrAD T>
Implements gridfire::DynamicEngine .
-Definition at line 624 of file engine_graph.cpp .
+Definition at line 602 of file engine_graph.cpp .
@@ -2120,7 +2117,7 @@ template<IsArithmeticOrAD T>
@@ -2193,54 +2190,7 @@ template<IsArithmeticOrAD T>
Implements gridfire::DynamicEngine .
-Definition at line 908 of file engine_graph.cpp .
-
-
-
-◆
-
-
-
-
-
-
- void gridfire::GraphEngine::validateComposition
- (
- const fourdst::composition::Composition & composition
-
- double culling
-
- double T9
-
-
-
-private
-
-
-
-
-
Validates the composition against the current reaction set.
-
Parameters
-
- composition The composition to validate. culling The culling threshold to use. T9 The temperature to use.
-
-
-
This method validates the composition against the current reaction set. If the composition is not compatible with the reaction set, the reaction set is rebuilt from the composition.
-
-
Definition at line 242 of file engine_graph.cpp .
+
Definition at line 886 of file engine_graph.cpp .
Full sparsity pattern for the Jacobian matrix.
-Definition at line 465 of file engine_graph.h .
+Definition at line 464 of file engine_graph.h .
@@ -2420,7 +2370,7 @@ template<IsArithmeticOrAD T>
Work object for sparse Jacobian calculations.
-Definition at line 464 of file engine_graph.h .
+Definition at line 463 of file engine_graph.h .
@@ -2446,7 +2396,7 @@ template<IsArithmeticOrAD T>
Jacobian matrix (species x species).
-Definition at line 462 of file engine_graph.h .
+Definition at line 461 of file engine_graph.h .
@@ -2470,7 +2420,7 @@ template<IsArithmeticOrAD T>
@@ -2496,7 +2446,7 @@ template<IsArithmeticOrAD T>
Vector of unique species in the network.
-Definition at line 456 of file engine_graph.h .
+Definition at line 455 of file engine_graph.h .
@@ -2522,7 +2472,7 @@ template<IsArithmeticOrAD T>
Map from species name to Species object.
-Definition at line 457 of file engine_graph.h .
+Definition at line 456 of file engine_graph.h .
@@ -2548,7 +2498,7 @@ template<IsArithmeticOrAD T>
Partition function for the network.
-Definition at line 479 of file engine_graph.h .
+Definition at line 478 of file engine_graph.h .
@@ -2574,7 +2524,7 @@ template<IsArithmeticOrAD T>
Precomputed reactions for efficiency.
-Definition at line 478 of file engine_graph.h .
+Definition at line 477 of file engine_graph.h .
@@ -2600,7 +2550,7 @@ template<IsArithmeticOrAD T>
Map from reaction ID to REACLIBReaction. //PERF: This makes copies of REACLIBReaction and could be a performance bottleneck.
-Definition at line 454 of file engine_graph.h .
+Definition at line 453 of file engine_graph.h .
@@ -2626,7 +2576,7 @@ template<IsArithmeticOrAD T>
Set of REACLIB reactions in the network.
-Definition at line 453 of file engine_graph.h .
+Definition at line 452 of file engine_graph.h .
@@ -2652,7 +2602,7 @@ template<IsArithmeticOrAD T>
CppAD function for the right-hand side of the ODE.
-Definition at line 463 of file engine_graph.h .
+Definition at line 462 of file engine_graph.h .
@@ -2676,7 +2626,7 @@ template<IsArithmeticOrAD T>
@@ -2702,7 +2652,7 @@ template<IsArithmeticOrAD T>
Screening type for the reaction network. Default to no screening.
-Definition at line 469 of file engine_graph.h .
+Definition at line 468 of file engine_graph.h .
@@ -2728,7 +2678,7 @@ template<IsArithmeticOrAD T>
Map from species to their index in the stoichiometry matrix.
-Definition at line 458 of file engine_graph.h .
+Definition at line 457 of file engine_graph.h .
@@ -2754,7 +2704,7 @@ template<IsArithmeticOrAD T>
Stoichiometry matrix (species x reactions).
-Definition at line 460 of file engine_graph.h .
+Definition at line 459 of file engine_graph.h .
@@ -2780,7 +2730,7 @@ template<IsArithmeticOrAD T>
Flag to enable or disable using precomputed reactions for efficiency. Mathematically, this should not change the results. Generally end users should not need to change this.
-Definition at line 472 of file engine_graph.h .
+Definition at line 471 of file engine_graph.h .
@@ -2806,7 +2756,7 @@ template<IsArithmeticOrAD T>
Flag to enable or disable reverse reactions. If false, only forward reactions are considered.
-Definition at line 474 of file engine_graph.h .
+Definition at line 473 of file engine_graph.h .
diff --git a/docs/html/classgridfire_1_1_graph_engine.js b/docs/html/classgridfire_1_1_graph_engine.js
index f5a9b4ac..4c6c9730 100644
--- a/docs/html/classgridfire_1_1_graph_engine.js
+++ b/docs/html/classgridfire_1_1_graph_engine.js
@@ -53,7 +53,6 @@ var classgridfire_1_1_graph_engine =
[ "setUseReverseReactions", "classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197", null ],
[ "syncInternalMaps", "classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f", null ],
[ "update", "classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6", null ],
- [ "validateComposition", "classgridfire_1_1_graph_engine.html#aeeafeab40a5f4dbfae78bdc87e25e93f", null ],
[ "validateConservation", "classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be", null ],
[ "m_atomicReverseRates", "classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6", null ],
[ "m_config", "classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18", null ],
diff --git a/docs/html/classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html b/docs/html/classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html
index da57776f..2f8f7ca8 100644
--- a/docs/html/classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html
+++ b/docs/html/classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html
@@ -135,7 +135,7 @@ Private Attributes
-
Definition at line 407 of file engine_graph.h .
+
Definition at line 406 of file engine_graph.h .
◆
auto Y_initial = multiscaleEngine.mapNetInToMolarAbundanceVector({equilibratedComp, ...});
auto derivatives = multiscaleEngine.calculateRHSAndEnergy(Y_initial, T9, rho);
-A reaction network engine that uses a graph-based representation.
A reaction network engine that uses a graph-based representation.
An engine view that partitions the reaction network into multiple groups based on timescales.
Abstract class for engines supporting Jacobian and stoichiometry operations.
std::string getNetworkFile() const
const io::NetworkFileParser & getParser() const
bool isPrecomputationEnabled() const
double calculateReverseRateTwoBody(const reaction::Reaction &reaction, const double T9, const double forwardRate, const double expFactor) const
double calculateReverseRate(const reaction::Reaction &reaction, double T9) const
void setUseReverseReactions(bool useReverse)
void setPrecomputation(bool precompute)
void exportToCSV(const std::string &filename) const
Exports the network to a CSV file for analysis.
static std::unordered_map< fourdst::atomic::Species, int > getNetReactionStoichiometry(const reaction::Reaction &reaction)
Gets the net stoichiometry for a given reaction.
bool isPrecomputationEnabled() const
double calculateReverseRateTwoBody(const reaction::Reaction &reaction, const double T9, const double forwardRate, const double expFactor) const
double calculateReverseRate(const reaction::Reaction &reaction, double T9) const
void setUseReverseReactions(bool useReverse)
void setPrecomputation(bool precompute)
void exportToCSV(const std::string &filename) const
Exports the network to a CSV file for analysis.
static std::unordered_map< fourdst::atomic::Species, int > getNetReactionStoichiometry(const reaction::Reaction &reaction)
Gets the net stoichiometry for a given reaction.
bool involvesSpecies(const fourdst::atomic::Species &species) const
Checks if a given species is involved in the network.
void generateJacobianMatrix(const std::vector< double > &Y_dynamic, const double T9, const double rho) const override
Generates the Jacobian matrix for the current state.
void exportToDot(const std::string &filename) const
Exports the network to a DOT file for visualization.
const partition::PartitionFunction & getPartitionFunction() const
bool isUsingReverseReactions() const
double calculateReverseRateTwoBodyDerivative(const reaction::Reaction &reaction, const double T9, const double reverseRate) const
void generateJacobianMatrix(const std::vector< double > &Y_dynamic, const double T9, const double rho) const override
Generates the Jacobian matrix for the current state.
void exportToDot(const std::string &filename) const
Exports the network to a DOT file for visualization.
const partition::PartitionFunction & getPartitionFunction() const
bool isUsingReverseReactions() const
double calculateReverseRateTwoBodyDerivative(const reaction::Reaction &reaction, const double T9, const double reverseRate) const
const std::vector< fourdst::atomic::Species > & getDynamicSpecies() const
Gets the dynamic species in the network.
const DynamicEngine & getBaseEngine() const override
Gets the base engine.
std::vector< fourdst::atomic::Species > getFastSpecies() const
Gets the fast species in the network.
-A reaction network engine that uses a graph-based representation.
A reaction network engine that uses a graph-based representation.
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
256 LOG_DEBUG(
m_logger ,
"Reaction set not cached. Rebuilding the reaction set for T9={} and culling={}." , T9, culling);
-
-
-
-
+
+
+
+
+
+
247 LOG_TRACE_L3_LIMIT_EVERY_N(std::numeric_limits<int>::max(),
m_logger ,
"Reverse reactions are disabled. Returning 0.0 for reverse rate of reaction '{}'." ,
reaction .id());
+
+
+
250 const double temp = T9 * 1e9;
+
+
+
253 assert(Constants::getInstance().get(
"kB" ).unit ==
"erg / K" );
+
+
+
256 const double expFactor = std::exp(-
reaction .qValue() / (kBMeV * temp));
+
257 double reverseRate = 0.0;
+
258 const double forwardRate =
reaction .calculate_rate(T9);
+
+
+
+
+
263 LOG_WARNING_LIMIT_EVERY_N(1000000,
m_logger ,
"Reverse rate calculation for reactions with more than two reactants or products is not implemented (reaction id {})." ,
reaction .peName());
+
+
265 LOG_TRACE_L2_LIMIT_EVERY_N(1000,
m_logger ,
"Calculated reverse rate for reaction '{}': {:.3E} at T9={:.3E}." ,
reaction .id(), reverseRate, T9);
+
+
-
-
-
-
-
-
267 LOG_TRACE_L3_LIMIT_EVERY_N(std::numeric_limits<int>::max(),
m_logger ,
"Reverse reactions are disabled. Returning 0.0 for reverse rate of reaction '{}'." ,
reaction .id());
-
-
-
-
-
272 std::cout <<
"\texpFactor = exp(-qValue/(kB * T9))\n" ;
-
273 std::cout <<
"\texpFactor: " << expFactor <<
" for reaction: " <<
reaction .peName() << std::endl;
-
274 std::cout <<
"\tQ-value: " <<
reaction .qValue() <<
" at T9: " << T9 << std::endl;
-
275 std::cout <<
"\tT9: " << T9 << std::endl;
-
276 std::cout <<
"\tkB * T9: " <<
m_constants .kB * T9 << std::endl;
-
277 std::cout <<
"\tqValue/(kB * T9): " <<
reaction .qValue() / (
m_constants .kB * T9) << std::endl;
-
-
279 double reverseRate = 0.0;
-
280 const double forwardRate =
reaction .calculate_rate(T9);
-
-
-
-
-
285 LOG_WARNING_LIMIT_EVERY_N(1000000,
m_logger ,
"Reverse rate calculation for reactions with more than two reactants or products is not implemented (reaction id {})." ,
reaction .peName());
-
-
287 LOG_TRACE_L2_LIMIT_EVERY_N(1000,
m_logger ,
"Calculated reverse rate for reaction '{}': {:.3E} at T9={:.3E}." ,
reaction .id(), reverseRate, T9);
-
-
-
-
-
-
-
294 const double forwardRate,
-
295 const double expFactor
-
-
297 std::vector<double> reactantPartitionFunctions;
-
298 std::vector<double> productPartitionFunctions;
-
-
300 reactantPartitionFunctions.reserve(
reaction .reactants().size());
-
301 productPartitionFunctions.reserve(
reaction .products().size());
+
+
+
+
+
+
272 const double forwardRate,
+
273 const double expFactor
+
+
275 std::vector<double> reactantPartitionFunctions;
+
276 std::vector<double> productPartitionFunctions;
+
+
278 reactantPartitionFunctions.reserve(
reaction .reactants().size());
+
279 productPartitionFunctions.reserve(
reaction .products().size());
+
+
281 std::unordered_map<fourdst::atomic::Species, int> reactantMultiplicity;
+
282 std::unordered_map<fourdst::atomic::Species, int> productMultiplicity;
+
+
284 reactantMultiplicity.reserve(
reaction .reactants().size());
+
285 productMultiplicity.reserve(
reaction .products().size());
+
+
287 for (
const auto & reactant :
reaction .reactants()) {
+
288 reactantMultiplicity[reactant] += 1;
+
+
290 for (
const auto & product :
reaction .products()) {
+
291 productMultiplicity[product] += 1;
+
+
293 double reactantSymmetryFactor = 1.0;
+
294 double productSymmetryFactor = 1.0;
+
295 for (
const auto & count : reactantMultiplicity | std::views::values) {
+
296 reactantSymmetryFactor *= std::tgamma(count + 1);
+
+
298 for (
const auto & count : productMultiplicity | std::views::values) {
+
299 productSymmetryFactor *= std::tgamma(count + 1);
+
+
301 const double symmetryFactor = reactantSymmetryFactor / productSymmetryFactor;
-
303 std::unordered_map<fourdst::atomic::Species, int> reactantMultiplicity;
-
304 std::unordered_map<fourdst::atomic::Species, int> productMultiplicity;
-
-
306 reactantMultiplicity.reserve(
reaction .reactants().size());
-
307 productMultiplicity.reserve(
reaction .products().size());
-
-
309 for (
const auto & reactant :
reaction .reactants()) {
-
310 reactantMultiplicity[reactant] += 1;
-
-
312 for (
const auto & product :
reaction .products()) {
-
313 productMultiplicity[product] += 1;
-
-
315 double reactantSymmetryFactor = 1.0;
-
316 double productSymmetryFactor = 1.0;
-
317 for (
const auto & count : reactantMultiplicity | std::views::values) {
-
318 reactantSymmetryFactor *= std::tgamma(count + 1);
-
-
320 for (
const auto & count : productMultiplicity | std::views::values) {
-
321 productSymmetryFactor *= std::tgamma(count + 1);
-
-
323 const double symmetryFactor = reactantSymmetryFactor / productSymmetryFactor;
-
-
-
326 auto mass_op = [](
double acc,
const auto & species) {
return acc * species.a(); };
-
327 const double massNumerator = std::accumulate(
-
-
-
-
-
-
333 const double massDenominator = std::accumulate(
-
-
-
-
-
-
-
-
341 auto pf_op = [&](
double acc,
const auto & species) {
-
-
-
344 const double partitionFunctionNumerator = std::accumulate(
-
-
-
-
-
-
350 const double partitionFunctionDenominator = std::accumulate(
-
-
-
-
-
+
+
304 auto mass_op = [](
double acc,
const auto & species) {
return acc * species.a(); };
+
305 const double massNumerator = std::accumulate(
+
+
+
+
+
+
311 const double massDenominator = std::accumulate(
+
+
+
+
+
+
+
+
319 auto pf_op = [&](
double acc,
const auto & species) {
+
+
+
322 const double partitionFunctionNumerator = std::accumulate(
+
+
+
+
+
+
328 const double partitionFunctionDenominator = std::accumulate(
+
+
+
+
+
+
+
335 const double CT = std::pow(massNumerator/massDenominator, 1.5) *
+
336 (partitionFunctionNumerator/partitionFunctionDenominator);
+
+
338 const double reverseRate = forwardRate * symmetryFactor * CT * expFactor;
+
339 if (!std::isfinite(reverseRate)) {
+
+
+
+
+
+
+
+
+
+
+
+
349 const double reverseRate
+
+
+
352 LOG_TRACE_L3_LIMIT_EVERY_N(std::numeric_limits<int>::max(),
m_logger ,
"Reverse reactions are disabled. Returning 0.0 for reverse rate of reaction '{}'." ,
reaction .id());
+
+
+
355 const double d_log_kFwd =
reaction .calculate_forward_rate_log_derivative(T9);
-
357 const double CT = std::pow(massNumerator/massDenominator, 1.5) *
-
358 (partitionFunctionNumerator/partitionFunctionDenominator);
-
-
360 const double reverseRate = forwardRate * symmetryFactor * CT * expFactor;
-
361 if (!std::isfinite(reverseRate)) {
-
-
-
-
-
-
-
-
-
-
-
-
371 const double reverseRate
-
-
-
374 LOG_TRACE_L3_LIMIT_EVERY_N(std::numeric_limits<int>::max(),
m_logger ,
"Reverse reactions are disabled. Returning 0.0 for reverse rate of reaction '{}'." ,
reaction .id());
-
-
-
377 const double d_log_kFwd =
reaction .calculate_forward_rate_log_derivative(T9);
+
357 auto log_deriv_pf_op = [&](
double acc,
const auto & species) {
+
+
359 const double dg_dT =
m_partitionFunction ->evaluateDerivative(species.z(), species.a(), T9);
+
360 return (g == 0.0) ? acc : acc + (dg_dT / g);
+
+
+
363 const double reactant_log_derivative_sum = std::accumulate(
+
+
+
+
+
+
+
370 const double product_log_derivative_sum = std::accumulate(
+
+
+
+
+
+
+
377 const double d_log_C = reactant_log_derivative_sum - product_log_derivative_sum;
-
379 auto log_deriv_pf_op = [&](
double acc,
const auto & species) {
-
-
381 const double dg_dT =
m_partitionFunction ->evaluateDerivative(species.z(), species.a(), T9);
-
382 return (g == 0.0) ? acc : acc + (dg_dT / g);
-
+
+
+
381 const double log_total_derivative = d_log_kFwd + d_log_C + d_log_exp;
+
+
383 return reverseRate * log_total_derivative;
-
385 const double reactant_log_derivative_sum = std::accumulate(
-
-
-
-
-
-
-
392 const double product_log_derivative_sum = std::accumulate(
-
-
-
-
-
+
+
+
+
+
+
+
+
-
399 const double d_log_C = reactant_log_derivative_sum - product_log_derivative_sum;
-
-
-
-
403 const double log_total_derivative = d_log_kFwd + d_log_C + d_log_exp;
-
-
405 return reverseRate * log_total_derivative;
+
+
+
+
401 for (
const auto & [symbol, entry] : netIn.
composition ) {
+
+
+
+
+
-
-
-
-
-
423 for (
const auto & [symbol, entry] : netIn.
composition ) {
-
-
-
-
-
+
+
+
409 fourdst::composition::Composition composition;
+
+
411 std::vector<std::string> symbols;
+
+
+
414 symbols.emplace_back(symbol.name());
+
+
416 composition.registerSymbol(symbols);
+
417 for (
const auto & [symbol, entry] : netIn.
composition ) {
+
+
419 composition.setMassFraction(symbol, entry.mass_fraction());
+
+
421 composition.setMassFraction(symbol, 0.0);
+
+
+
424 composition.finalize(
true );
+
+
+
-
-
-
-
431 fourdst::composition::Composition composition;
-
-
433 std::vector<std::string> symbols;
-
-
-
436 symbols.emplace_back(symbol.name());
-
-
438 composition.registerSymbol(symbols);
-
439 for (
const auto & [symbol, entry] : netIn.
composition ) {
-
-
441 composition.setMassFraction(symbol, entry.mass_fraction());
-
-
443 composition.setMassFraction(symbol, 0.0);
-
+
+
+
431 return primingReport;
+
+
+
+
+
+
+
+
+
+
+
+
+
444 LOG_DEBUG(
m_logger ,
"Rebuild requested with the same depth. No changes made to the network." );
-
446 composition.finalize(
true );
-
-
-
-
-
-
-
453 return primingReport;
-
+
-
-
-
-
-
+
+
+
+
449 const std::vector<double> &Y_in,
+
450 const std::vector<double> &bare_rates,
+
451 const std::vector<double> &bare_reverse_rates,
+
+
+
+
+
456 const std::vector<double> screeningFactors =
m_screeningModel ->calculateScreeningFactors(
+
+
+
+
+
+
+
+
+
465 std::vector<double> molarReactionFlows;
+
+
+
+
469 double forwardAbundanceProduct = 1.0;
+
+
471 for (
size_t i = 0; i < precomp.unique_reactant_indices.size(); ++i) {
+
472 const size_t reactantIndex = precomp.unique_reactant_indices[i];
+
473 const int power = precomp.reactant_powers[i];
+
+
+
+
+
+
+
480 forwardAbundanceProduct *= std::pow(Y_in[reactantIndex], power);
+
+
+
+
+
+
+
487 const double bare_rate = bare_rates[precomp.reaction_index];
+
488 const double screeningFactor = screeningFactors[precomp.reaction_index];
+
489 const size_t numReactants =
m_reactions [precomp.reaction_index].reactants().size();
+
490 const size_t numProducts =
m_reactions [precomp.reaction_index].products().size();
+
+
492 const double forwardMolarReactionFlow =
+
+
+
495 precomp.symmetry_factor *
+
496 forwardAbundanceProduct *
+
497 std::pow(rho, numReactants > 1 ? numReactants - 1 : 0.0);
+
+
499 double reverseMolarReactionFlow = 0.0;
+
+
501 const double bare_reverse_rate = bare_reverse_rates[precomp.reaction_index];
+
502 double reverseAbundanceProduct = 1.0;
+
503 for (
size_t i = 0; i < precomp.unique_product_indices.size(); ++i) {
+
504 reverseAbundanceProduct *= std::pow(Y_in[precomp.unique_product_indices[i]], precomp.product_powers[i]);
+
+
506 reverseMolarReactionFlow = screeningFactor *
+
+
508 precomp.reverse_symmetry_factor *
+
509 reverseAbundanceProduct *
+
510 std::pow(rho, numProducts > 1 ? numProducts - 1 : 0.0);
+
+
+
513 molarReactionFlows.push_back(forwardMolarReactionFlow - reverseMolarReactionFlow);
+
+
+
+
+
+
+
+
+
522 const double R_j = molarReactionFlows[j];
+
+
524 for (
size_t i = 0; i < precomp.affected_species_indices.size(); ++i) {
+
525 const size_t speciesIndex = precomp.affected_species_indices[i];
+
526 const int stoichiometricCoefficient = precomp.stoichiometric_coefficients[i];
+
+
+
529 result.
dydt [speciesIndex] +=
static_cast< double > (stoichiometricCoefficient) * R_j;
+
+
+
+
+
534 double massProductionRate = 0.0;
+
+
+
+
+
+
+
+
-
-
-
-
-
-
-
-
-
466 LOG_DEBUG(
m_logger ,
"Rebuild requested with the same depth. No changes made to the network." );
-
-
+
+
+
+
+
546 LOG_TRACE_L1(
m_logger ,
"Generating stoichiometry matrix..." );
+
+
+
+
+
+
+
553 LOG_TRACE_L1(
m_logger ,
"Stoichiometry matrix initialized with dimensions: {} rows (species) x {} columns (reactions)." ,
+
554 numSpecies, numReactions);
+
+
+
+
558 size_t reactionColumnIndex = 0;
+
+
+
561 std::unordered_map<fourdst::atomic::Species, int> netStoichiometry =
reaction .stoichiometry();
+
+
+
564 for (
const auto & [species, coefficient] : netStoichiometry) {
+
+
+
+
568 const size_t speciesRowIndex = it->second;
+
+
+
+
+
573 LOG_ERROR(
m_logger ,
"CRITICAL ERROR: Species '{}' from reaction '{}' stoichiometry not found in species to index map." ,
+
+
+
576 throw std::runtime_error(
"Species not found in species to index map: " + std::string(species.name()));
+
+
+
579 reactionColumnIndex++;
+
+
+
582 LOG_TRACE_L1(
m_logger ,
"Stoichiometry matrix population complete. Number of non-zero elements: {}." ,
+
+
-
-
-
-
471 const std::vector<double> &Y_in,
-
472 const std::vector<double> &bare_rates,
-
473 const std::vector<double> &bare_reverse_rates,
-
-
-
-
-
478 const std::vector<double> screeningFactors =
m_screeningModel ->calculateScreeningFactors(
-
-
-
-
-
-
-
-
-
487 std::vector<double> molarReactionFlows;
-
-
-
-
491 double forwardAbundanceProduct = 1.0;
-
-
493 for (
size_t i = 0; i < precomp.unique_reactant_indices.size(); ++i) {
-
494 const size_t reactantIndex = precomp.unique_reactant_indices[i];
-
495 const int power = precomp.reactant_powers[i];
-
-
-
-
-
-
-
502 forwardAbundanceProduct *= std::pow(Y_in[reactantIndex], power);
-
-
-
-
-
-
-
509 const double bare_rate = bare_rates[precomp.reaction_index];
-
510 const double screeningFactor = screeningFactors[precomp.reaction_index];
-
511 const size_t numReactants =
m_reactions [precomp.reaction_index].reactants().size();
-
512 const size_t numProducts =
m_reactions [precomp.reaction_index].products().size();
-
-
514 const double forwardMolarReactionFlow =
-
-
-
517 precomp.symmetry_factor *
-
518 forwardAbundanceProduct *
-
519 std::pow(rho, numReactants > 1 ? numReactants - 1 : 0.0);
-
-
521 double reverseMolarReactionFlow = 0.0;
-
-
523 const double bare_reverse_rate = bare_reverse_rates[precomp.reaction_index];
-
524 double reverseAbundanceProduct = 1.0;
-
525 for (
size_t i = 0; i < precomp.unique_product_indices.size(); ++i) {
-
526 reverseAbundanceProduct *= std::pow(Y_in[precomp.unique_product_indices[i]], precomp.product_powers[i]);
-
-
528 reverseMolarReactionFlow = screeningFactor *
-
-
530 precomp.reverse_symmetry_factor *
-
531 reverseAbundanceProduct *
-
532 std::pow(rho, numProducts > 1 ? numProducts - 1 : 0.0);
-
-
-
535 molarReactionFlows.push_back(forwardMolarReactionFlow - reverseMolarReactionFlow);
-
-
-
-
-
-
-
-
-
544 const double R_j = molarReactionFlows[j];
-
-
546 for (
size_t i = 0; i < precomp.affected_species_indices.size(); ++i) {
-
547 const size_t speciesIndex = precomp.affected_species_indices[i];
-
548 const int stoichiometricCoefficient = precomp.stoichiometric_coefficients[i];
-
-
-
551 result.
dydt [speciesIndex] +=
static_cast< double > (stoichiometricCoefficient) * R_j;
-
-
-
-
-
556 double massProductionRate = 0.0;
-
-
-
-
-
-
-
-
+
+
+
+
587 const std::vector<double> &Y_in,
+
+
+
+
+
-
-
-
-
-
568 LOG_TRACE_L1(
m_logger ,
"Generating stoichiometry matrix..." );
-
-
-
-
-
-
-
575 LOG_TRACE_L1(
m_logger ,
"Stoichiometry matrix initialized with dimensions: {} rows (species) x {} columns (reactions)." ,
-
576 numSpecies, numReactions);
-
-
-
-
580 size_t reactionColumnIndex = 0;
-
-
-
583 std::unordered_map<fourdst::atomic::Species, int> netStoichiometry =
reaction .stoichiometry();
-
-
-
586 for (
const auto & [species, coefficient] : netStoichiometry) {
-
-
-
-
590 const size_t speciesRowIndex = it->second;
-
-
-
-
-
595 LOG_ERROR(
m_logger ,
"CRITICAL ERROR: Species '{}' from reaction '{}' stoichiometry not found in species to index map." ,
-
-
-
598 throw std::runtime_error(
"Species not found in species to index map: " + std::string(species.name()));
-
-
-
601 reactionColumnIndex++;
-
-
-
604 LOG_TRACE_L1(
m_logger ,
"Stoichiometry matrix population complete. Number of non-zero elements: {}." ,
-
-
+
+
+
+
595 const std::vector<ADDouble> &Y_in,
+
+
+
+
+
-
-
-
-
609 const std::vector<double> &Y_in,
-
-
-
-
-
+
+
-
-
-
-
617 const std::vector<ADDouble> &Y_in,
-
-
-
-
-
+
+
-
-
-
-
-
-
+
+
-
-
-
-
-
+
+
-
-
-
-
-
+
+
-
-
-
-
-
+
+
+
+
+
625 const std::vector<double> &Y,
+
+
+
+
+
+
+
+
+
633 const std::vector<double> &Y_dynamic,
+
+
+
+
+
638 LOG_TRACE_L1_LIMIT_EVERY_N(1000,
m_logger ,
"Generating jacobian matrix for T9={}, rho={}.." , T9, rho);
+
-
-
-
-
+
+
642 std::vector<double> adInput(numSpecies + 2, 0.0);
+
643 for (
size_t i = 0; i < numSpecies; ++i) {
+
644 adInput[i] = std::max(Y_dynamic[i], 1e-99);
+
+
646 adInput[numSpecies] = T9;
+
647 adInput[numSpecies + 1] = rho;
+
+
+
650 const std::vector<double> dotY =
m_rhsADFun .Jacobian(adInput);
+
+
+
+
654 for (
size_t i = 0; i < numSpecies; ++i) {
+
655 for (
size_t j = 0; j < numSpecies; ++j) {
+
656 const double value = dotY[i * (numSpecies + 2) + j];
+
+
+
+
+
+
+
-
-
-
-
-
647 const std::vector<double> &Y,
-
-
-
-
-
-
-
-
-
-
655 const std::vector<double> &Y_dynamic,
-
-
-
-
-
660 LOG_TRACE_L1_LIMIT_EVERY_N(1000,
m_logger ,
"Generating jacobian matrix for T9={}, rho={}.." , T9, rho);
-
-
-
-
664 std::vector<double> adInput(numSpecies + 2, 0.0);
-
665 for (
size_t i = 0; i < numSpecies; ++i) {
-
666 adInput[i] = std::max(Y_dynamic[i], 1e-99);
-
-
668 adInput[numSpecies] = T9;
-
669 adInput[numSpecies + 1] = rho;
-
-
-
672 const std::vector<double> dotY =
m_rhsADFun .Jacobian(adInput);
-
-
-
-
676 for (
size_t i = 0; i < numSpecies; ++i) {
-
677 for (
size_t j = 0; j < numSpecies; ++j) {
-
678 const double value = dotY[i * (numSpecies + 2) + j];
-
-
-
-
-
-
-
-
-
-
-
-
688 const std::vector<double> &Y_dynamic,
-
-
-
-
-
-
-
695 std::vector<double> x(numSpecies + 2, 0.0);
-
696 for (
size_t i = 0; i < numSpecies; ++i) {
-
-
-
-
700 x[numSpecies + 1] = rho;
-
-
-
703 const size_t nnz = sparsityPattern.size();
-
704 std::vector<size_t> row_indices(nnz);
-
705 std::vector<size_t> col_indices(nnz);
-
-
707 for (
size_t k = 0; k < nnz; ++k) {
-
708 row_indices[k] = sparsityPattern[k].first;
-
709 col_indices[k] = sparsityPattern[k].second;
-
-
-
712 std::vector<double> values(nnz);
-
713 const size_t num_rows_jac = numSpecies;
-
714 const size_t num_cols_jac = numSpecies + 2;
+
+
+
+
666 const std::vector<double> &Y_dynamic,
+
+
+
+
+
+
+
673 std::vector<double> x(numSpecies + 2, 0.0);
+
674 for (
size_t i = 0; i < numSpecies; ++i) {
+
+
+
+
678 x[numSpecies + 1] = rho;
+
+
+
681 const size_t nnz = sparsityPattern.size();
+
682 std::vector<size_t> row_indices(nnz);
+
683 std::vector<size_t> col_indices(nnz);
+
+
685 for (
size_t k = 0; k < nnz; ++k) {
+
686 row_indices[k] = sparsityPattern[k].first;
+
687 col_indices[k] = sparsityPattern[k].second;
+
+
+
690 std::vector<double> values(nnz);
+
691 const size_t num_rows_jac = numSpecies;
+
692 const size_t num_cols_jac = numSpecies + 2;
+
+
694 CppAD::sparse_rc<std::vector<size_t>> CppAD_sparsity_pattern(num_rows_jac, num_cols_jac, nnz);
+
695 for (
size_t k = 0; k < nnz; ++k) {
+
696 CppAD_sparsity_pattern.set(k, sparsityPattern[k].first, sparsityPattern[k].second);
+
+
+
699 CppAD::sparse_rcv<std::vector<size_t>, std::vector<double>> jac_subset(CppAD_sparsity_pattern);
+
+
+
+
+
+
+
+
+
+
+
+
711 for (
size_t k = 0; k < nnz; ++k) {
+
712 const size_t row = jac_subset.row()[k];
+
713 const size_t col = jac_subset.col()[k];
+
714 const double value = jac_subset.val()[k];
-
716 CppAD::sparse_rc<std::vector<size_t>> CppAD_sparsity_pattern(num_rows_jac, num_cols_jac, nnz);
-
717 for (
size_t k = 0; k < nnz; ++k) {
-
718 CppAD_sparsity_pattern.set(k, sparsityPattern[k].first, sparsityPattern[k].second);
+
+
+
-
-
721 CppAD::sparse_rcv<std::vector<size_t>, std::vector<double>> jac_subset(CppAD_sparsity_pattern);
-
-
-
-
-
-
-
-
-
-
-
-
733 for (
size_t k = 0; k < nnz; ++k) {
-
734 const size_t row = jac_subset.row()[k];
-
735 const size_t col = jac_subset.col()[k];
-
736 const double value = jac_subset.val()[k];
-
-
-
-
-
-
+
-
-
-
-
-
-
+
+
-
-
-
-
-
-
-
+
+
+
+
+
+
734 const int speciesIndex,
+
735 const int reactionIndex
+
+
+
+
+
+
+
+
741 LOG_TRACE_L1(
m_logger ,
"Exporting network graph to DOT file: {}" , filename);
+
+
743 std::ofstream dotFile(filename);
+
744 if (!dotFile.is_open()) {
+
745 LOG_ERROR(
m_logger ,
"Failed to open file for writing: {}" , filename);
+
+
747 throw std::runtime_error(
"Failed to open file for writing: " + filename);
+
+
+
750 dotFile <<
"digraph NuclearReactionNetwork {\n" ;
+
751 dotFile <<
" graph [rankdir=LR, splines=true, overlap=false, bgcolor=\"#f0f0f0\"];\n" ;
+
752 dotFile <<
" node [shape=circle, style=filled, fillcolor=\"#a7c7e7\", fontname=\"Helvetica\"];\n" ;
+
753 dotFile <<
" edge [fontname=\"Helvetica\", fontsize=10];\n\n" ;
-
-
-
756 const int speciesIndex,
-
757 const int reactionIndex
-
-
-
-
+
+
756 dotFile <<
" // --- Species Nodes ---\n" ;
+
+
758 dotFile <<
" \"" << species.name() <<
"\" [label=\"" << species.name() <<
"\"];\n" ;
+
+
-
-
-
763 LOG_TRACE_L1(
m_logger ,
"Exporting network graph to DOT file: {}" , filename);
-
-
765 std::ofstream dotFile(filename);
-
766 if (!dotFile.is_open()) {
-
767 LOG_ERROR(
m_logger ,
"Failed to open file for writing: {}" , filename);
-
-
769 throw std::runtime_error(
"Failed to open file for writing: " + filename);
-
-
-
772 dotFile <<
"digraph NuclearReactionNetwork {\n" ;
-
773 dotFile <<
" graph [rankdir=LR, splines=true, overlap=false, bgcolor=\"#f0f0f0\"];\n" ;
-
774 dotFile <<
" node [shape=circle, style=filled, fillcolor=\"#a7c7e7\", fontname=\"Helvetica\"];\n" ;
-
775 dotFile <<
" edge [fontname=\"Helvetica\", fontsize=10];\n\n" ;
-
-
-
778 dotFile <<
" // --- Species Nodes ---\n" ;
-
-
780 dotFile <<
" \"" << species.name() <<
"\" [label=\"" << species.name() <<
"\"];\n" ;
+
+
763 dotFile <<
" // --- Reaction Edges ---\n" ;
+
+
+
766 std::string reactionNodeId =
"reaction_" + std::string(
reaction .id());
+
+
+
769 dotFile <<
" \"" << reactionNodeId <<
"\" [shape=point, fillcolor=black, width=0.1, height=0.1, label=\"\"];\n" ;
+
+
+
772 for (
const auto & reactant :
reaction .reactants()) {
+
773 dotFile <<
" \"" << reactant.name() <<
"\" -> \"" << reactionNodeId <<
"\";\n" ;
+
+
+
+
777 for (
const auto & product :
reaction .products()) {
+
778 dotFile <<
" \"" << reactionNodeId <<
"\" -> \"" << product.name() <<
"\" [label=\"" <<
reaction .qValue() <<
" MeV\"];\n" ;
+
+
-
-
-
-
785 dotFile <<
" // --- Reaction Edges ---\n" ;
-
-
-
788 std::string reactionNodeId =
"reaction_" + std::string(
reaction .id());
-
-
-
791 dotFile <<
" \"" << reactionNodeId <<
"\" [shape=point, fillcolor=black, width=0.1, height=0.1, label=\"\"];\n" ;
-
-
-
794 for (
const auto & reactant :
reaction .reactants()) {
-
795 dotFile <<
" \"" << reactant.name() <<
"\" -> \"" << reactionNodeId <<
"\";\n" ;
-
-
-
-
799 for (
const auto & product :
reaction .products()) {
-
800 dotFile <<
" \"" << reactionNodeId <<
"\" -> \"" << product.name() <<
"\" [label=\"" <<
reaction .qValue() <<
" MeV\"];\n" ;
-
-
-
-
-
-
-
807 LOG_TRACE_L1(
m_logger ,
"Successfully exported network to {}" , filename);
-
+
+
+
+
785 LOG_TRACE_L1(
m_logger ,
"Successfully exported network to {}" , filename);
+
-
-
-
-
811 LOG_TRACE_L1(
m_logger ,
"Exporting network graph to CSV file: {}" , filename);
-
-
813 std::ofstream csvFile(filename, std::ios::out | std::ios::trunc);
-
814 if (!csvFile.is_open()) {
-
815 LOG_ERROR(
m_logger ,
"Failed to open file for writing: {}" , filename);
-
-
817 throw std::runtime_error(
"Failed to open file for writing: " + filename);
-
-
819 csvFile <<
"Reaction;Reactants;Products;Q-value;sources;rates\n" ;
-
-
-
-
-
-
825 for (
const auto & reactant :
reaction .reactants()) {
-
826 csvFile << reactant.name();
-
827 if (++count <
reaction .reactants().size()) {
-
-
-
-
-
-
833 for (
const auto & product :
reaction .products()) {
-
834 csvFile << product.name();
-
835 if (++count <
reaction .products().size()) {
-
-
-
-
839 csvFile <<
";" <<
reaction .qValue() <<
";" ;
-
-
-
-
843 for (
const auto & source : sources) {
-
-
845 if (++count < sources.size()) {
-
-
-
-
-
-
-
852 for (
const auto & rates :
reaction ) {
-
-
-
-
-
-
-
-
-
861 LOG_TRACE_L1(
m_logger ,
"Successfully exported network graph to {}" , filename);
-
+
+
+
+
789 LOG_TRACE_L1(
m_logger ,
"Exporting network graph to CSV file: {}" , filename);
+
+
791 std::ofstream csvFile(filename, std::ios::out | std::ios::trunc);
+
792 if (!csvFile.is_open()) {
+
793 LOG_ERROR(
m_logger ,
"Failed to open file for writing: {}" , filename);
+
+
795 throw std::runtime_error(
"Failed to open file for writing: " + filename);
+
+
797 csvFile <<
"Reaction;Reactants;Products;Q-value;sources;rates\n" ;
+
+
+
+
+
+
803 for (
const auto & reactant :
reaction .reactants()) {
+
804 csvFile << reactant.name();
+
805 if (++count <
reaction .reactants().size()) {
+
+
+
+
+
+
811 for (
const auto & product :
reaction .products()) {
+
812 csvFile << product.name();
+
813 if (++count <
reaction .products().size()) {
+
+
+
+
817 csvFile <<
";" <<
reaction .qValue() <<
";" ;
+
+
+
+
821 for (
const auto & source : sources) {
+
+
823 if (++count < sources.size()) {
+
+
+
+
+
+
+
830 for (
const auto & rates :
reaction ) {
+
+
+
+
+
+
+
+
+
839 LOG_TRACE_L1(
m_logger ,
"Successfully exported network graph to {}" , filename);
+
-
-
-
-
865 const std::vector<double> &Y,
-
-
-
-
-
870 std::unordered_map<fourdst::atomic::Species, double> speciesTimescales;
-
-
-
873 double timescale = std::numeric_limits<double>::infinity();
-
-
875 if (std::abs(dydt[i]) > 0.0) {
-
876 timescale = std::abs(Y[i] / dydt[i]);
-
-
878 speciesTimescales.emplace(species, timescale);
-
-
880 return speciesTimescales;
-
+
+
+
+
843 const std::vector<double> &Y,
+
+
+
+
+
848 std::unordered_map<fourdst::atomic::Species, double> speciesTimescales;
+
+
+
851 double timescale = std::numeric_limits<double>::infinity();
+
+
853 if (std::abs(dydt[i]) > 0.0) {
+
854 timescale = std::abs(Y[i] / dydt[i]);
+
+
856 speciesTimescales.emplace(species, timescale);
+
+
858 return speciesTimescales;
+
-
-
-
-
884 const std::vector<double> &Y,
-
-
-
-
-
889 std::unordered_map<fourdst::atomic::Species, double> speciesDestructionTimescales;
-
-
-
892 double netDestructionFlow = 0.0;
-
-
894 if (
reaction .stoichiometry(species) < 0) {
-
-
896 netDestructionFlow += flow;
-
-
-
899 double timescale = std::numeric_limits<double>::infinity();
-
900 if (netDestructionFlow != 0.0) {
-
-
-
903 speciesDestructionTimescales.emplace(species, timescale);
-
-
905 return speciesDestructionTimescales;
-
+
+
+
+
862 const std::vector<double> &Y,
+
+
+
+
+
867 std::unordered_map<fourdst::atomic::Species, double> speciesDestructionTimescales;
+
+
+
870 double netDestructionFlow = 0.0;
+
+
872 if (
reaction .stoichiometry(species) < 0) {
+
+
874 netDestructionFlow += flow;
+
+
+
877 double timescale = std::numeric_limits<double>::infinity();
+
878 if (netDestructionFlow != 0.0) {
+
+
+
881 speciesDestructionTimescales.emplace(species, timescale);
+
+
883 return speciesDestructionTimescales;
+
-
-
-
-
909 fourdst::composition::Composition baseUpdatedComposition = netIn.
composition ;
-
-
-
912 baseUpdatedComposition.registerSpecies(species);
-
913 baseUpdatedComposition.setMassFraction(species, 0.0);
-
-
-
916 baseUpdatedComposition.finalize(
false );
-
917 return baseUpdatedComposition;
-
+
+
+
+
887 fourdst::composition::Composition baseUpdatedComposition = netIn.
composition ;
+
+
+
890 baseUpdatedComposition.registerSpecies(species);
+
891 baseUpdatedComposition.setMassFraction(species, 0.0);
+
+
+
894 baseUpdatedComposition.finalize(
false );
+
895 return baseUpdatedComposition;
+
-
-
-
-
-
+
+
-
-
-
-
925 LOG_TRACE_L1(
m_logger ,
"Recording AD tape for the RHS calculation..." );
-
-
-
-
929 if (numSpecies == 0) {
-
930 LOG_ERROR(
m_logger ,
"Cannot record AD tape: No species in the network." );
-
-
932 throw std::runtime_error(
"Cannot record AD tape: No species in the network." );
-
-
934 const size_t numADInputs = numSpecies + 2;
+
+
+
+
903 LOG_TRACE_L1(
m_logger ,
"Recording AD tape for the RHS calculation..." );
+
+
+
+
907 if (numSpecies == 0) {
+
908 LOG_ERROR(
m_logger ,
"Cannot record AD tape: No species in the network." );
+
+
910 throw std::runtime_error(
"Cannot record AD tape: No species in the network." );
+
+
912 const size_t numADInputs = numSpecies + 2;
+
+
+
+
+
+
+
+
920 const auto uniformMassFraction =
static_cast< CppAD::AD<double>
> (1.0 /
static_cast< double > (numSpecies));
+
921 std::vector<CppAD::AD<double>> adInput(numADInputs, uniformMassFraction);
+
922 adInput[numSpecies] = 1.0;
+
923 adInput[numSpecies + 1] = 1.0;
+
+
+
+
927 CppAD::Independent(adInput);
+
+
929 std::vector<CppAD::AD<double>> adY(numSpecies);
+
930 for (
size_t i = 0; i < numSpecies; ++i) {
+
+
+
933 const CppAD::AD<double> adT9 = adInput[numSpecies];
+
934 const CppAD::AD<double> adRho = adInput[numSpecies + 1];
-
-
-
-
+
+
+
+
-
-
942 const auto uniformMassFraction =
static_cast< CppAD::AD<double>
> (1.0 /
static_cast< double > (numSpecies));
-
943 std::vector<CppAD::AD<double>> adInput(numADInputs, uniformMassFraction);
-
944 adInput[numSpecies] = 1.0;
-
945 adInput[numSpecies + 1] = 1.0;
+
+
+
943 LOG_TRACE_L1(
m_logger ,
"AD tape recorded successfully for the RHS calculation. Number of independent variables: {}." ,
+
+
+
-
-
-
949 CppAD::Independent(adInput);
+
+
+
+
-
951 std::vector<CppAD::AD<double>> adY(numSpecies);
-
952 for (
size_t i = 0; i < numSpecies; ++i) {
-
-
-
955 const CppAD::AD<double> adT9 = adInput[numSpecies];
-
956 const CppAD::AD<double> adRho = adInput[numSpecies + 1];
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
961 LOG_TRACE_L1(
m_logger ,
"Pre-computing constant components of GraphNetwork state..." );
-
-
-
965 LOG_TRACE_L1(
m_logger ,
"AD tape recorded successfully for the RHS calculation. Number of independent variables: {}." ,
-
-
-
+
+
964 std::unordered_map<fourdst::atomic::Species, size_t> speciesIndexMap;
+
+
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
983 LOG_TRACE_L1(
m_logger ,
"Pre-computing constant components of GraphNetwork state..." );
+
+
+
+
+
+
+
+
+
+
+
979 std::unordered_map<size_t, int> reactantCounts;
+
980 for (
const auto & reactant:
reaction .reactants()) {
+
981 size_t reactantIndex = speciesIndexMap.at(reactant);
+
982 reactantCounts[reactantIndex]++;
+
-
-
986 std::unordered_map<fourdst::atomic::Species, size_t> speciesIndexMap;
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1001 std::unordered_map<size_t, int> reactantCounts;
-
1002 for (
const auto & reactant:
reaction .reactants()) {
-
1003 size_t reactantIndex = speciesIndexMap.at(reactant);
-
1004 reactantCounts[reactantIndex]++;
-
-
-
1007 double symmetryDenominator = 1.0;
-
1008 for (
const auto & [index, count] : reactantCounts) {
-
-
-
-
1012 symmetryDenominator *= std::tgamma(count + 1);
+
985 double symmetryDenominator = 1.0;
+
986 for (
const auto & [index, count] : reactantCounts) {
+
+
+
+
990 symmetryDenominator *= std::tgamma(count + 1);
+
+
+
+
+
+
+
997 std::unordered_map<size_t, int> productCounts;
+
998 for (
const auto & product :
reaction .products()) {
+
999 productCounts[speciesIndexMap.at(product)]++;
+
+
1001 double reverseSymmetryDenominator = 1.0;
+
1002 for (
const auto & [index, count] : productCounts) {
+
+
+
1005 reverseSymmetryDenominator *= std::tgamma(count + 1);
+
+
+
+
+
+
+
-
-
-
-
-
1019 std::unordered_map<size_t, int> productCounts;
-
1020 for (
const auto & product :
reaction .products()) {
-
1021 productCounts[speciesIndexMap.at(product)]++;
-
-
1023 double reverseSymmetryDenominator = 1.0;
-
1024 for (
const auto & [index, count] : productCounts) {
-
-
-
1027 reverseSymmetryDenominator *= std::tgamma(count + 1);
-
-
-
-
-
-
-
-
-
-
-
1038 const auto stoichiometryMap =
reaction .stoichiometry();
-
-
-
-
1042 for (
const auto & [species, coeff] : stoichiometryMap) {
-
-
-
-
-
-
+
+
1016 const auto stoichiometryMap =
reaction .stoichiometry();
+
+
+
+
1020 for (
const auto & [species, coeff] : stoichiometryMap) {
+
+
+
+
+
+
+
+
+
+
+
+
+
+
1032 const CppAD::vector<bool> &vx,
+
1033 CppAD::vector<bool> &vy,
+
1034 const CppAD::vector<double> &tx,
+
1035 CppAD::vector<double> &ty
+
+
+
1038 if ( p != 0) {
return false ; }
+
1039 const double T9 = tx[0];
+
+
+
+
1043 ty[0] = reverseRate;
+
+
1045 if (vx.size() > 0) {
+
+
+
-
-
-
-
1054 const CppAD::vector<bool> &vx,
-
1055 CppAD::vector<bool> &vy,
-
1056 const CppAD::vector<double> &tx,
-
1057 CppAD::vector<double> &ty
-
-
-
1060 if ( p != 0) {
return false ; }
-
1061 const double T9 = tx[0];
-
-
-
-
1065 ty[0] = reverseRate;
-
-
1067 if (vx.size() > 0) {
-
-
-
-
+
+
+
1053 const CppAD::vector<double> &tx,
+
1054 const CppAD::vector<double> &ty,
+
1055 CppAD::vector<double> &px,
+
1056 const CppAD::vector<double> &py
+
+
1058 const double T9 = tx[0];
+
1059 const double reverseRate = ty[0];
+
+
1061 const double derivative =
m_engine .calculateReverseRateTwoBodyDerivative(
m_reaction , T9, reverseRate);
+
+
+
1064 px[0] = py[0] * derivative;
+
+
+
-
-
-
-
-
1075 const CppAD::vector<double> &tx,
-
1076 const CppAD::vector<double> &ty,
-
1077 CppAD::vector<double> &px,
-
1078 const CppAD::vector<double> &py
-
-
1080 const double T9 = tx[0];
-
1081 const double reverseRate = ty[0];
-
-
1083 const double derivative =
m_engine .calculateReverseRateTwoBodyDerivative(
m_reaction , T9, reverseRate);
-
-
-
1086 px[0] = py[0] * derivative;
-
-
-
+
+
+
+
+
1071 const CppAD::vector<std::set<size_t>> &r,
+
1072 CppAD::vector<std::set<size_t>> &s
+
+
+
+
-
-
-
-
-
1093 const CppAD::vector<std::set<size_t>> &r,
-
1094 CppAD::vector<std::set<size_t>> &s
-
-
-
-
+
+
+
+
+
1080 const CppAD::vector<std::set<size_t>> &rt,
+
1081 CppAD::vector<std::set<size_t>> &st
+
+
+
+
-
-
-
-
-
1102 const CppAD::vector<std::set<size_t>> &rt,
-
1103 CppAD::vector<std::set<size_t>> &st
-
-
-
-
-
-
-
bool reverse(size_t q, const CppAD::vector< double > &tx, const CppAD::vector< double > &ty, CppAD::vector< double > &px, const CppAD::vector< double > &py) override
-
const GraphEngine & m_engine
-
bool rev_sparse_jac(size_t q, const CppAD::vector< std::set< size_t > > &rt, CppAD::vector< std::set< size_t > > &st) override
-
const reaction::Reaction & m_reaction
-
bool forward(size_t p, size_t q, const CppAD::vector< bool > &vx, CppAD::vector< bool > &vy, const CppAD::vector< double > &tx, CppAD::vector< double > &ty) override
-
bool for_sparse_jac(size_t q, const CppAD::vector< std::set< size_t > > &r, CppAD::vector< std::set< size_t > > &s) override
-
bool isPrecomputationEnabled() const
-
double calculateReverseRateTwoBody(const reaction::Reaction &reaction, const double T9, const double forwardRate, const double expFactor) const
-
double calculateReverseRate(const reaction::Reaction &reaction, double T9) const
+
+
bool reverse(size_t q, const CppAD::vector< double > &tx, const CppAD::vector< double > &ty, CppAD::vector< double > &px, const CppAD::vector< double > &py) override
+
const GraphEngine & m_engine
+
bool rev_sparse_jac(size_t q, const CppAD::vector< std::set< size_t > > &rt, CppAD::vector< std::set< size_t > > &st) override
+
const reaction::Reaction & m_reaction
+
bool forward(size_t p, size_t q, const CppAD::vector< bool > &vx, CppAD::vector< bool > &vy, const CppAD::vector< double > &tx, CppAD::vector< double > &ty) override
+
bool for_sparse_jac(size_t q, const CppAD::vector< std::set< size_t > > &r, CppAD::vector< std::set< size_t > > &s) override
+
bool isPrecomputationEnabled() const
+
double calculateReverseRateTwoBody(const reaction::Reaction &reaction, const double T9, const double forwardRate, const double expFactor) const
+
double calculateReverseRate(const reaction::Reaction &reaction, double T9) const
const std::vector< fourdst::atomic::Species > & getNetworkSpecies() const override
Gets the list of species in the network.
-
-
BuildDepthType getDepth() const override
-
bool m_usePrecomputation
Flag to enable or disable using precomputed reactions for efficiency. Mathematically,...
-
CppAD::sparse_rc< std::vector< size_t > > m_full_jacobian_sparsity_pattern
Full sparsity pattern for the Jacobian matrix.
-
CppAD::sparse_jac_work m_jac_work
Work object for sparse Jacobian calculations.
+
+
BuildDepthType getDepth() const override
+
bool m_usePrecomputation
Flag to enable or disable using precomputed reactions for efficiency. Mathematically,...
+
CppAD::sparse_rc< std::vector< size_t > > m_full_jacobian_sparsity_pattern
Full sparsity pattern for the Jacobian matrix.
+
CppAD::sparse_jac_work m_jac_work
Work object for sparse Jacobian calculations.
void populateReactionIDMap()
Populates the reaction ID map.
-
std::vector< double > mapNetInToMolarAbundanceVector(const NetIn &netIn) const override
-
void collectAtomicReverseRateAtomicBases()
-
CppAD::ADFun< double > m_rhsADFun
CppAD function for the right-hand side of the ODE.
-
boost::numeric::ublas::compressed_matrix< double > m_jacobianMatrix
Jacobian matrix (species x species).
-
double getJacobianMatrixEntry(const int i, const int j) const override
Gets an entry from the previously generated Jacobian matrix.
-
std::unordered_map< std::string_view, fourdst::atomic::Species > m_networkSpeciesMap
Map from species name to Species object.
-
bool m_useReverseReactions
Flag to enable or disable reverse reactions. If false, only forward reactions are considered.
-
std::unique_ptr< partition::PartitionFunction > m_partitionFunction
Partition function for the network.
+
std::vector< double > mapNetInToMolarAbundanceVector(const NetIn &netIn) const override
+
void collectAtomicReverseRateAtomicBases()
+
CppAD::ADFun< double > m_rhsADFun
CppAD function for the right-hand side of the ODE.
+
boost::numeric::ublas::compressed_matrix< double > m_jacobianMatrix
Jacobian matrix (species x species).
+
double getJacobianMatrixEntry(const int i, const int j) const override
Gets an entry from the previously generated Jacobian matrix.
+
std::unordered_map< std::string_view, fourdst::atomic::Species > m_networkSpeciesMap
Map from species name to Species object.
+
bool m_useReverseReactions
Flag to enable or disable reverse reactions. If false, only forward reactions are considered.
+
std::unique_ptr< partition::PartitionFunction > m_partitionFunction
Partition function for the network.
void setNetworkReactions(const reaction::LogicalReactionSet &reactions) override
-
void setUseReverseReactions(bool useReverse)
+
void setUseReverseReactions(bool useReverse)
void populateSpeciesToIndexMap()
Populates the species-to-index map.
-
-
screening::ScreeningType m_screeningType
Screening type for the reaction network. Default to no screening.
-
fourdst::composition::Composition update(const NetIn &netIn) override
Update the internal state of the engine.
-
std::vector< PrecomputedReaction > m_precomputedReactions
Precomputed reactions for efficiency.
-
std::unordered_map< std::string_view, reaction::Reaction * > m_reactionIDMap
Map from reaction ID to REACLIBReaction. //PERF: This makes copies of REACLIBReaction and could be a ...
-
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesTimescales(const std::vector< double > &Y, double T9, double rho) const override
Computes timescales for all species in the network.
-
screening::ScreeningType getScreeningModel() const override
Get the current electron screening model.
-
int getStoichiometryMatrixEntry(const int speciesIndex, const int reactionIndex) const override
Gets an entry from the stoichiometry matrix.
-
void setPrecomputation(bool precompute)
-
-
void setScreeningModel(screening::ScreeningType) override
Set the electron screening model.
-
std::vector< std::unique_ptr< AtomicReverseRate > > m_atomicReverseRates
-
void exportToCSV(const std::string &filename) const
Exports the network to a CSV file for analysis.
-
static std::unordered_map< fourdst::atomic::Species, int > getNetReactionStoichiometry(const reaction::Reaction &reaction)
Gets the net stoichiometry for a given reaction.
+
+
screening::ScreeningType m_screeningType
Screening type for the reaction network. Default to no screening.
+
fourdst::composition::Composition update(const NetIn &netIn) override
Update the internal state of the engine.
+
std::vector< PrecomputedReaction > m_precomputedReactions
Precomputed reactions for efficiency.
+
std::unordered_map< std::string_view, reaction::Reaction * > m_reactionIDMap
Map from reaction ID to REACLIBReaction. //PERF: This makes copies of REACLIBReaction and could be a ...
+
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesTimescales(const std::vector< double > &Y, double T9, double rho) const override
Computes timescales for all species in the network.
+
screening::ScreeningType getScreeningModel() const override
Get the current electron screening model.
+
int getStoichiometryMatrixEntry(const int speciesIndex, const int reactionIndex) const override
Gets an entry from the stoichiometry matrix.
+
void setPrecomputation(bool precompute)
+
+
void setScreeningModel(screening::ScreeningType) override
Set the electron screening model.
+
std::vector< std::unique_ptr< AtomicReverseRate > > m_atomicReverseRates
+
void exportToCSV(const std::string &filename) const
Exports the network to a CSV file for analysis.
+
static std::unordered_map< fourdst::atomic::Species, int > getNetReactionStoichiometry(const reaction::Reaction &reaction)
Gets the net stoichiometry for a given reaction.
void reserveJacobianMatrix() const
Reserves space for the Jacobian matrix.
-
int getSpeciesIndex(const fourdst::atomic::Species &species) const override
-
double calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< double > &Y, const double T9, const double rho) const override
Calculates the molar reaction flow for a given reaction.
-
-
std::vector< fourdst::atomic::Species > m_networkSpecies
Vector of unique species in the network.
-
void recordADTape()
Records the AD tape for the right-hand side of the ODE.
-
StepDerivatives< double > calculateAllDerivativesUsingPrecomputation(const std::vector< double > &Y_in, const std::vector< double > &bare_rates, const std::vector< double > &bare_reverse_rates, double T9, double rho) const
+
int getSpeciesIndex(const fourdst::atomic::Species &species) const override
+
double calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< double > &Y, const double T9, const double rho) const override
Calculates the molar reaction flow for a given reaction.
+
+
std::vector< fourdst::atomic::Species > m_networkSpecies
Vector of unique species in the network.
+
void recordADTape()
Records the AD tape for the right-hand side of the ODE.
+
StepDerivatives< double > calculateAllDerivativesUsingPrecomputation(const std::vector< double > &Y_in, const std::vector< double > &bare_rates, const std::vector< double > &bare_reverse_rates, double T9, double rho) const
bool involvesSpecies(const fourdst::atomic::Species &species) const
Checks if a given species is involved in the network.
std::expected< StepDerivatives< double >, expectations::StaleEngineError > calculateRHSAndEnergy(const std::vector< double > &Y, const double T9, const double rho) const override
Calculates the right-hand side (dY/dt) and energy generation rate.
-
reaction::LogicalReactionSet m_reactions
Set of REACLIB reactions in the network.
+
reaction::LogicalReactionSet m_reactions
Set of REACLIB reactions in the network.
void syncInternalMaps()
Synchronizes the internal maps.
bool validateConservation() const
Validates mass and charge conservation across all reactions.
-
void generateJacobianMatrix(const std::vector< double > &Y_dynamic, const double T9, const double rho) const override
Generates the Jacobian matrix for the current state.
-
boost::numeric::ublas::compressed_matrix< int > m_stoichiometryMatrix
Stoichiometry matrix (species x reactions).
+
void generateJacobianMatrix(const std::vector< double > &Y_dynamic, const double T9, const double rho) const override
Generates the Jacobian matrix for the current state.
+
boost::numeric::ublas::compressed_matrix< int > m_stoichiometryMatrix
Stoichiometry matrix (species x reactions).
const reaction::LogicalReactionSet & getNetworkReactions() const override
Gets the set of logical reactions in the network.
-
std::unordered_map< fourdst::atomic::Species, size_t > m_speciesToIndexMap
Map from species to their index in the stoichiometry matrix.
-
void rebuild(const fourdst::composition::Composition &comp, const BuildDepthType depth) override
-
void exportToDot(const std::string &filename) const
Exports the network to a DOT file for visualization.
-
const partition::PartitionFunction & getPartitionFunction() const
-
bool isUsingReverseReactions() const
-
PrimingReport primeEngine(const NetIn &netIn) override
-
void generateStoichiometryMatrix() override
Generates the stoichiometry matrix for the network.
+
std::unordered_map< fourdst::atomic::Species, size_t > m_speciesToIndexMap
Map from species to their index in the stoichiometry matrix.
+
void rebuild(const fourdst::composition::Composition &comp, const BuildDepthType depth) override
+
void exportToDot(const std::string &filename) const
Exports the network to a DOT file for visualization.
+
const partition::PartitionFunction & getPartitionFunction() const
+
bool isUsingReverseReactions() const
+
PrimingReport primeEngine(const NetIn &netIn) override
+
void generateStoichiometryMatrix() override
Generates the stoichiometry matrix for the network.
void collectNetworkSpecies()
Collects the unique species in the network.
-
void validateComposition(const fourdst::composition::Composition &composition, double culling, double T9)
Validates the composition against the current reaction set.
-
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesDestructionTimescales(const std::vector< double > &Y, double T9, double rho) const override
-
bool isStale(const NetIn &netIn) override
-
std::unique_ptr< screening::ScreeningModel > m_screeningModel
-
double calculateReverseRateTwoBodyDerivative(const reaction::Reaction &reaction, const double T9, const double reverseRate) const
-
StepDerivatives< T > calculateAllDerivatives(const std::vector< T > &Y_in, T T9, T rho) const
Calculates all derivatives (dY/dt) and the energy generation rate.
+
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesDestructionTimescales(const std::vector< double > &Y, double T9, double rho) const override
+
bool isStale(const NetIn &netIn) override
+
std::unique_ptr< screening::ScreeningModel > m_screeningModel
+
double calculateReverseRateTwoBodyDerivative(const reaction::Reaction &reaction, const double T9, const double reverseRate) const
+
StepDerivatives< T > calculateAllDerivatives(const std::vector< T > &Y_in, T T9, T rho) const
Calculates all derivatives (dY/dt) and the energy generation rate.
GraphEngine(const fourdst::composition::Composition &composition, const BuildDepthType=NetworkBuildDepth::Full)
Constructs a GraphEngine from a composition.
Abstract interface for evaluating nuclear partition functions.
Represents a single nuclear reaction from a specific data source.
@@ -1397,28 +1372,27 @@ $(function(){initNavTree('engine__graph_8cpp_source.html',''); initResizable(tru
std::unique_ptr< ScreeningModel > selectScreeningModel(ScreeningType type)
A factory function to select and create a screening model.
ScreeningType
Enumerates the available plasma screening models.
-
CppAD::AD< double > ADDouble
Alias for CppAD AD type for double precision.
+
CppAD::AD< double > ADDouble
Alias for CppAD AD type for double precision.
std::variant< NetworkBuildDepth, int > BuildDepthType
Variant specifying either a predefined NetworkBuildDepth or a custom integer depth.
std::vector< std::pair< size_t, size_t > > SparsityPattern
PrimingReport primeNetwork(const NetIn &, DynamicEngine &engine)
Primes absent species in the network to their equilibrium abundances.
-
static constexpr double MIN_JACOBIAN_THRESHOLD
Minimum value for Jacobian matrix entries.
+
static constexpr double MIN_JACOBIAN_THRESHOLD
Minimum value for Jacobian matrix entries.
reaction::LogicalReactionSet build_reaclib_nuclear_network(const fourdst::composition::Composition &composition, BuildDepthType maxLayers=NetworkBuildDepth::Full, bool reverse=false)
Builds a nuclear reaction network from the Reaclib library based on an initial composition.
-
Defines classes for representing and managing nuclear reactions.
-
-
std::vector< int > reactant_powers
-
std::vector< int > product_powers
Powers of each unique product in the reverse reaction.
-
std::vector< size_t > affected_species_indices
-
std::vector< size_t > unique_reactant_indices
-
double reverse_symmetry_factor
Symmetry factor for reverse reactions.
-
std::vector< int > stoichiometric_coefficients
-
-
std::vector< size_t > unique_product_indices
Unique product indices for reverse reactions.
-
+
+
std::vector< int > reactant_powers
+
std::vector< int > product_powers
Powers of each unique product in the reverse reaction.
+
std::vector< size_t > affected_species_indices
+
std::vector< size_t > unique_reactant_indices
+
double reverse_symmetry_factor
Symmetry factor for reverse reactions.
+
std::vector< int > stoichiometric_coefficients
+
+
std::vector< size_t > unique_product_indices
Unique product indices for reverse reactions.
+
double density
Density in g/cm^3.
fourdst::composition::Composition composition
Composition of the network.
diff --git a/docs/html/engine__graph_8h.html b/docs/html/engine__graph_8h.html
index bd754ee6..156efd9d 100644
--- a/docs/html/engine__graph_8h.html
+++ b/docs/html/engine__graph_8h.html
@@ -157,8 +157,6 @@ Typedefs
static bool gridfire::s_debug = false static constexpr double gridfire::MIN_DENSITY_THRESHOLD = 1e-18 Minimum density threshold below which reactions are ignored. 47 using fourdst::config::Config;
48 using fourdst::logging::LogManager;
49 using fourdst::constant::Constants;
-
-
-
-
114 const fourdst::composition::Composition &composition,
-
-
-
-
-
119 const fourdst::composition::Composition &composition,
-
-
-
-
-
-
-
-
148 const std::vector<double>& Y,
-
-
-
-
-
-
167 const std::vector<double>& Y_dynamic,
-
-
-
-
-
-
173 const std::vector<double> &Y_dynamic,
-
-
-
-
-
-
-
-
-
-
201 const std::vector<double>&Y,
-
-
-
-
-
210 [[nodiscard]]
const std::vector<fourdst::atomic::Species>&
getNetworkSpecies ()
const override ;
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
258 const int speciesIndex,
-
259 const int reactionIndex
-
-
-
-
274 const std::vector<double>& Y,
-
-
-
-
-
-
280 const std::vector<double>& Y,
-
-
-
-
-
285 fourdst::composition::Composition
update (
const NetIn &netIn)
override ;
-
-
-
-
-
296 const fourdst::atomic::Species& species
-
-
-
-
316 const std::string& filename
-
-
-
-
336 const std::string& filename
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
357 const double forwardRate,
-
358 const double expFactor
-
-
-
-
-
-
364 const double reverseRate
-
-
-
-
-
-
-
-
372 const fourdst::atomic::Species& species
-
-
-
-
-
-
-
-
-
+
+
+
46 using fourdst::config::Config;
+
47 using fourdst::logging::LogManager;
+
48 using fourdst::constant::Constants;
+
+
+
+
+
+
+
+
+
+
+
+
+
113 const fourdst::composition::Composition &composition,
+
+
+
+
+
118 const fourdst::composition::Composition &composition,
+
+
+
+
+
+
+
+
147 const std::vector<double>& Y,
+
+
+
+
+
+
166 const std::vector<double>& Y_dynamic,
+
+
+
+
+
+
172 const std::vector<double> &Y_dynamic,
+
+
+
+
+
+
+
+
+
+
200 const std::vector<double>&Y,
+
+
+
+
+
209 [[nodiscard]]
const std::vector<fourdst::atomic::Species>&
getNetworkSpecies ()
const override ;
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
257 const int speciesIndex,
+
258 const int reactionIndex
+
+
+
+
273 const std::vector<double>& Y,
+
+
+
+
+
+
279 const std::vector<double>& Y,
+
+
+
+
+
284 fourdst::composition::Composition
update (
const NetIn &netIn)
override ;
+
+
+
+
+
295 const fourdst::atomic::Species& species
+
+
+
+
315 const std::string& filename
+
+
+
+
335 const std::string& filename
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
356 const double forwardRate,
+
357 const double expFactor
+
+
+
+
+
+
363 const double reverseRate
+
+
+
+
+
+
+
+
371 const fourdst::atomic::Species& species
+
+
+
+
+
+
+
+
+
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
-
-
-
-
401 const double u = Constants::getInstance().get(
"u" ).value;
-
402 const double Na = Constants::getInstance().get(
"N_a" ).value;
-
403 const double c = Constants::getInstance().get(
"c" ).value;
-
404 const double kB = Constants::getInstance().get(
"kB" ).value;
-
+
+
+
+
400 const double u = Constants::getInstance().get(
"u" ).value;
+
401 const double Na = Constants::getInstance().get(
"N_a" ).value;
+
402 const double c = Constants::getInstance().get(
"c" ).value;
+
403 const double kB = Constants::getInstance().get(
"kB" ).value;
+
-
-
-
-
-
-
-
-
-
-
413 atomic_base<double>(
"AtomicReverseRate" ),
-
-
+
+
+
+
+
+
+
+
+
+
412 atomic_base<double>(
"AtomicReverseRate" ),
+
+
-
-
-
-
-
420 const CppAD::vector<bool>& vx,
-
421 CppAD::vector<bool>& vy,
-
422 const CppAD::vector<double>& tx,
-
423 CppAD::vector<double>& ty
-
-
-
-
427 const CppAD::vector<double>& tx,
-
428 const CppAD::vector<double>& ty,
-
429 CppAD::vector<double>& px,
-
430 const CppAD::vector<double>& py
-
-
-
-
434 const CppAD::vector<std::set<size_t>>&r,
-
435 CppAD::vector<std::set<size_t>>& s
-
-
-
-
439 const CppAD::vector<std::set<size_t>>&rt,
-
440 CppAD::vector<std::set<size_t>>& st
-
-
-
-
-
-
+
+
+
+
+
419 const CppAD::vector<bool>& vx,
+
420 CppAD::vector<bool>& vy,
+
421 const CppAD::vector<double>& tx,
+
422 CppAD::vector<double>& ty
+
+
+
+
426 const CppAD::vector<double>& tx,
+
427 const CppAD::vector<double>& ty,
+
428 CppAD::vector<double>& px,
+
429 const CppAD::vector<double>& py
+
+
+
+
433 const CppAD::vector<std::set<size_t>>&r,
+
434 CppAD::vector<std::set<size_t>>& s
+
+
+
+
438 const CppAD::vector<std::set<size_t>>&rt,
+
439 CppAD::vector<std::set<size_t>>& st
+
+
+
+
+
+
-
-
-
449 quill::Logger*
m_logger = LogManager::getInstance().getLogger(
"log" );
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
563 const fourdst::composition::Composition &composition,
-
-
-
-
-
-
-
-
571 const std::vector<double> &Y_in,
-
572 const std::vector<double>& bare_rates,
-
573 const std::vector<double> &bare_reverse_rates,
-
574 double T9,
double rho
-
-
-
590 template <IsArithmeticOrAD T>
-
-
-
593 const std::vector<T> &Y,
-
-
-
-
-
598 template <IsArithmeticOrAD T>
-
-
-
-
602 std::vector<T> screeningFactors,
-
-
604 size_t reactionIndex,
-
+
+
+
448 quill::Logger*
m_logger = LogManager::getInstance().getLogger(
"log" );
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
552 const std::vector<double> &Y_in,
+
553 const std::vector<double>& bare_rates,
+
554 const std::vector<double> &bare_reverse_rates,
+
555 double T9,
double rho
+
+
+
571 template <IsArithmeticOrAD T>
+
+
+
574 const std::vector<T> &Y,
+
+
+
+
+
579 template <IsArithmeticOrAD T>
+
+
+
+
583 std::vector<T> screeningFactors,
+
+
585 size_t reactionIndex,
+
+
+
+
601 template <IsArithmeticOrAD T>
+
+
603 const std::vector<T> &Y_in,
+
+
-
620 template <IsArithmeticOrAD T>
-
-
622 const std::vector<T> &Y_in,
-
-
-
-
-
-
640 const std::vector<double>& Y_in,
-
-
-
-
-
-
658 const std::vector<ADDouble>& Y_in,
-
-
-
-
+
+
621 const std::vector<double>& Y_in,
+
+
+
+
+
+
639 const std::vector<ADDouble>& Y_in,
+
+
+
+
-
-
-
-
666 template <IsArithmeticOrAD T>
-
-
-
-
-
670 std::vector<T> screeningFactors,
-
-
672 size_t reactionIndex,
-
-
-
-
676 return static_cast< T
> (0.0);
-
-
-
-
680 if constexpr (!std::is_same_v<T, ADDouble>) {
-
-
682 std::cout <<
"Calculating reverse molar flow for reaction: " <<
reaction .peName() << std::endl;
-
683 std::cout <<
"\tT9: " << T9 <<
", rho: " << rho << std::endl;
-
-
-
686 T reverseMolarFlow =
static_cast< T
> (0.0);
-
-
-
689 T reverseRateConstant =
static_cast< T
> (0.0);
-
690 if constexpr (std::is_same_v<T, ADDouble>) {
-
-
692 if (atomic_func_ptr !=
nullptr ) {
-
-
-
695 std::vector<T> ax = { T9 };
-
-
697 std::vector<T> ay(1);
-
698 (*atomic_func_ptr)(ax, ay);
-
699 reverseRateConstant =
static_cast< T
> (ay[0]);
-
-
701 return reverseMolarFlow;
-
-
-
-
-
706 std::cout <<
"\tUsing double overload\n" ;
-
-
-
-
-
-
712 std::unordered_map<fourdst::atomic::Species, int> productCounts;
-
713 for (
const auto & product :
reaction .products()) {
-
714 productCounts[product]++;
-
-
-
-
718 T reverseSymmetryFactor =
static_cast< T
> (1.0);
-
719 for (
const auto &count: productCounts | std::views::values) {
-
720 reverseSymmetryFactor /=
static_cast< T
> (std::tgamma(
static_cast< double > (count + 1)));
-
-
-
-
724 T productAbundanceTerm =
static_cast< T
> (1.0);
-
725 for (
const auto & [species, count] : productCounts) {
-
-
727 productAbundanceTerm *= CppAD::pow(Y[speciesIndex], count);
-
-
-
-
731 const size_t num_products =
reaction .products().size();
-
732 const T rho_power = CppAD::pow(rho,
static_cast< T
> (num_products > 1 ? num_products - 1 : 0));
+
+
+
+
647 template <IsArithmeticOrAD T>
+
+
+
+
+
651 std::vector<T> screeningFactors,
+
+
653 size_t reactionIndex,
+
+
+
+
657 return static_cast< T
> (0.0);
+
+
659 T reverseMolarFlow =
static_cast< T
> (0.0);
+
+
+
662 T reverseRateConstant =
static_cast< T
> (0.0);
+
663 if constexpr (std::is_same_v<T, ADDouble>) {
+
+
665 if (atomic_func_ptr !=
nullptr ) {
+
+
+
668 std::vector<T> ax = { T9 };
+
+
670 std::vector<T> ay(1);
+
671 (*atomic_func_ptr)(ax, ay);
+
672 reverseRateConstant =
static_cast< T
> (ay[0]);
+
+
674 return reverseMolarFlow;
+
+
+
+
+
+
+
+
682 std::unordered_map<fourdst::atomic::Species, int> productCounts;
+
683 for (
const auto & product :
reaction .products()) {
+
684 productCounts[product]++;
+
+
+
+
688 T reverseSymmetryFactor =
static_cast< T
> (1.0);
+
689 for (
const auto &count: productCounts | std::views::values) {
+
690 reverseSymmetryFactor /=
static_cast< T
> (std::tgamma(
static_cast< double > (count + 1)));
+
+
+
+
694 T productAbundanceTerm =
static_cast< T
> (1.0);
+
695 for (
const auto & [species, count] : productCounts) {
+
+
697 productAbundanceTerm *= CppAD::pow(Y[speciesIndex], count);
+
+
+
+
701 const size_t num_products =
reaction .products().size();
+
702 const T rho_power = CppAD::pow(rho,
static_cast< T
> (num_products > 1 ? num_products - 1 : 0));
+
+
+
705 reverseMolarFlow = screeningFactors[reactionIndex] *
+
706 reverseRateConstant *
+
707 productAbundanceTerm *
+
708 reverseSymmetryFactor *
+
+
+
711 return reverseMolarFlow;
+
+
+
+
714 template <IsArithmeticOrAD T>
+
+
+
716 const std::vector<T> &Y_in, T T9, T rho)
const {
+
717 std::vector<T> screeningFactors =
m_screeningModel ->calculateScreeningFactors(
+
+
+
+
+
+
+
+
+
+
+
+
+
+
731 const T zero =
static_cast< T
> (0.0);
+
732 const T one =
static_cast< T
> (1.0);
-
-
735 reverseMolarFlow = screeningFactors[reactionIndex] *
-
736 reverseRateConstant *
-
737 productAbundanceTerm *
-
738 reverseSymmetryFactor *
-
-
-
741 return reverseMolarFlow;
-
-
-
-
744 template <IsArithmeticOrAD T>
-
-
-
746 const std::vector<T> &Y_in, T T9, T rho)
const {
-
747 std::vector<T> screeningFactors =
m_screeningModel ->calculateScreeningFactors(
-
-
-
-
-
-
-
-
-
-
-
-
-
-
761 const T zero =
static_cast< T
> (0.0);
-
762 const T one =
static_cast< T
> (1.0);
-
-
-
-
-
-
-
-
-
771 T threshold_flag = CppAD::CondExpLt(rho, rho_threshold, zero, one);
-
-
773 std::vector<T> Y = Y_in;
-
-
-
-
-
-
-
780 Y[i] = CppAD::CondExpLt(Y[i], zero, zero, Y[i]);
-
-
-
-
-
-
-
-
788 for (
size_t reactionIndex = 0; reactionIndex <
m_reactions .size(); ++reactionIndex) {
-
+
+
+
+
+
+
+
+
741 T threshold_flag = CppAD::CondExpLt(rho, rho_threshold, zero, one);
+
+
743 std::vector<T> Y = Y_in;
+
+
+
+
+
+
+
750 Y[i] = CppAD::CondExpLt(Y[i], zero, zero, Y[i]);
+
+
+
+
+
+
+
+
758 for (
size_t reactionIndex = 0; reactionIndex <
m_reactions .size(); ++reactionIndex) {
+
+
+
+
762 const T forwardMolarReactionFlow = screeningFactors[reactionIndex] *
+
+
+
+
+
+
+
+
+
+
+
+
+
775 const T molarReactionFlow = forwardMolarReactionFlow - reverseMolarFlow;
+
+
+
778 for (
size_t speciesIndex = 0; speciesIndex <
m_networkSpecies .size(); ++speciesIndex) {
+
+
780 result.
dydt [speciesIndex] += threshold_flag * nu_ij * molarReactionFlow;
+
+
+
+
784 T massProductionRate =
static_cast< T
> (0.0);
+
+
786 massProductionRate += result.
dydt [index] * species.mass() * u;
+
+
+
-
-
792 const T forwardMolarReactionFlow = screeningFactors[reactionIndex] *
-
+
+
+
+
-
-
-
-
-
-
-
-
-
-
-
805 const T molarReactionFlow = forwardMolarReactionFlow - reverseMolarFlow;
+
795 template <IsArithmeticOrAD T>
+
+
+
+
798 const std::vector<T> &Y,
+
+
+
+
+
+
+
805 const T zero =
static_cast< T
> (0.0);
-
-
808 for (
size_t speciesIndex = 0; speciesIndex <
m_networkSpecies .size(); ++speciesIndex) {
-
-
810 result.
dydt [speciesIndex] += threshold_flag * nu_ij * molarReactionFlow;
-
-
-
-
814 T massProductionRate =
static_cast< T
> (0.0);
-
-
816 massProductionRate += result.
dydt [index] * species.mass() * u;
-
-
-
+
+
808 const T k_reaction =
reaction .calculate_rate(T9);
+
+
+
811 std::unordered_map<std::string, int> reactant_counts;
+
812 reactant_counts.reserve(
reaction .reactants().size());
+
813 for (
const auto & reactant :
reaction .reactants()) {
+
814 reactant_counts[std::string(reactant.name())]++;
+
+
816 const int totalReactants =
static_cast< int > (
reaction .reactants().size());
+
+
+
819 auto molar_concentration_product =
static_cast< T
> (1.0);
-
-
+
+
822 for (
const auto & [species_name, count] : reactant_counts) {
+
+
+
+
826 const size_t species_index = species_it->second;
+
827 const T Yi = Y[species_index];
+
+
+
830 molar_concentration_product *= CppAD::pow(Yi,
static_cast< T
> (count));
+
+
+
+
834 molar_concentration_product /=
static_cast< T
> (std::tgamma(
static_cast< double > (count + 1)));
+
+
+
+
+
+
+
+
842 const T densityTerm = CppAD::pow(rho, totalReactants > 1 ?
static_cast< T
> (totalReactants - 1) : zero);
+
843 return molar_concentration_product * k_reaction * densityTerm;
+
-
-
-
825 template <IsArithmeticOrAD T>
-
-
-
-
828 const std::vector<T> &Y,
-
-
-
-
-
-
-
835 const T zero =
static_cast< T
> (0.0);
-
-
-
838 const T k_reaction =
reaction .calculate_rate(T9);
-
-
-
841 std::unordered_map<std::string, int> reactant_counts;
-
842 reactant_counts.reserve(
reaction .reactants().size());
-
843 for (
const auto & reactant :
reaction .reactants()) {
-
844 reactant_counts[std::string(reactant.name())]++;
-
-
846 const int totalReactants =
static_cast< int > (
reaction .reactants().size());
-
-
-
849 auto molar_concentration_product =
static_cast< T
> (1.0);
-
-
-
852 for (
const auto & [species_name, count] : reactant_counts) {
-
-
-
-
856 const size_t species_index = species_it->second;
-
857 const T Yi = Y[species_index];
-
-
-
860 molar_concentration_product *= CppAD::pow(Yi,
static_cast< T
> (count));
-
-
-
-
864 molar_concentration_product /=
static_cast< T
> (std::tgamma(
static_cast< double > (count + 1)));
-
-
-
-
-
-
-
-
872 const T densityTerm = CppAD::pow(rho, totalReactants > 1 ?
static_cast< T
> (totalReactants - 1) : zero);
-
873 return molar_concentration_product * k_reaction * densityTerm;
-
-
-
-
+
+
Abstract class for engines supporting Jacobian and stoichiometry operations.
-
AtomicReverseRate(const reaction::Reaction &reaction, const GraphEngine &engine)
-
bool reverse(size_t q, const CppAD::vector< double > &tx, const CppAD::vector< double > &ty, CppAD::vector< double > &px, const CppAD::vector< double > &py) override
-
const GraphEngine & m_engine
-
bool rev_sparse_jac(size_t q, const CppAD::vector< std::set< size_t > > &rt, CppAD::vector< std::set< size_t > > &st) override
-
const reaction::Reaction & m_reaction
-
bool forward(size_t p, size_t q, const CppAD::vector< bool > &vx, CppAD::vector< bool > &vy, const CppAD::vector< double > &tx, CppAD::vector< double > &ty) override
-
bool for_sparse_jac(size_t q, const CppAD::vector< std::set< size_t > > &r, CppAD::vector< std::set< size_t > > &s) override
-
bool isPrecomputationEnabled() const
-
double calculateReverseRateTwoBody(const reaction::Reaction &reaction, const double T9, const double forwardRate, const double expFactor) const
-
double calculateReverseRate(const reaction::Reaction &reaction, double T9) const
+
AtomicReverseRate(const reaction::Reaction &reaction, const GraphEngine &engine)
+
bool reverse(size_t q, const CppAD::vector< double > &tx, const CppAD::vector< double > &ty, CppAD::vector< double > &px, const CppAD::vector< double > &py) override
+
const GraphEngine & m_engine
+
bool rev_sparse_jac(size_t q, const CppAD::vector< std::set< size_t > > &rt, CppAD::vector< std::set< size_t > > &st) override
+
const reaction::Reaction & m_reaction
+
bool forward(size_t p, size_t q, const CppAD::vector< bool > &vx, CppAD::vector< bool > &vy, const CppAD::vector< double > &tx, CppAD::vector< double > &ty) override
+
bool for_sparse_jac(size_t q, const CppAD::vector< std::set< size_t > > &r, CppAD::vector< std::set< size_t > > &s) override
+
bool isPrecomputationEnabled() const
+
double calculateReverseRateTwoBody(const reaction::Reaction &reaction, const double T9, const double forwardRate, const double expFactor) const
+
double calculateReverseRate(const reaction::Reaction &reaction, double T9) const
const std::vector< fourdst::atomic::Species > & getNetworkSpecies() const override
Gets the list of species in the network.
-
-
BuildDepthType getDepth() const override
-
T calculateReverseMolarReactionFlow(T T9, T rho, std::vector< T > screeningFactors, std::vector< T > Y, size_t reactionIndex, const reaction::LogicalReaction &reaction) const
-
bool m_usePrecomputation
Flag to enable or disable using precomputed reactions for efficiency. Mathematically,...
-
CppAD::sparse_rc< std::vector< size_t > > m_full_jacobian_sparsity_pattern
Full sparsity pattern for the Jacobian matrix.
-
CppAD::sparse_jac_work m_jac_work
Work object for sparse Jacobian calculations.
+
+
BuildDepthType getDepth() const override
+
T calculateReverseMolarReactionFlow(T T9, T rho, std::vector< T > screeningFactors, std::vector< T > Y, size_t reactionIndex, const reaction::LogicalReaction &reaction) const
+
bool m_usePrecomputation
Flag to enable or disable using precomputed reactions for efficiency. Mathematically,...
+
CppAD::sparse_rc< std::vector< size_t > > m_full_jacobian_sparsity_pattern
Full sparsity pattern for the Jacobian matrix.
+
CppAD::sparse_jac_work m_jac_work
Work object for sparse Jacobian calculations.
void populateReactionIDMap()
Populates the reaction ID map.
-
std::vector< double > mapNetInToMolarAbundanceVector(const NetIn &netIn) const override
-
void collectAtomicReverseRateAtomicBases()
-
CppAD::ADFun< double > m_rhsADFun
CppAD function for the right-hand side of the ODE.
-
boost::numeric::ublas::compressed_matrix< double > m_jacobianMatrix
Jacobian matrix (species x species).
-
double getJacobianMatrixEntry(const int i, const int j) const override
Gets an entry from the previously generated Jacobian matrix.
-
std::unordered_map< std::string_view, fourdst::atomic::Species > m_networkSpeciesMap
Map from species name to Species object.
-
bool m_useReverseReactions
Flag to enable or disable reverse reactions. If false, only forward reactions are considered.
-
std::unique_ptr< partition::PartitionFunction > m_partitionFunction
Partition function for the network.
+
std::vector< double > mapNetInToMolarAbundanceVector(const NetIn &netIn) const override
+
void collectAtomicReverseRateAtomicBases()
+
CppAD::ADFun< double > m_rhsADFun
CppAD function for the right-hand side of the ODE.
+
boost::numeric::ublas::compressed_matrix< double > m_jacobianMatrix
Jacobian matrix (species x species).
+
double getJacobianMatrixEntry(const int i, const int j) const override
Gets an entry from the previously generated Jacobian matrix.
+
std::unordered_map< std::string_view, fourdst::atomic::Species > m_networkSpeciesMap
Map from species name to Species object.
+
bool m_useReverseReactions
Flag to enable or disable reverse reactions. If false, only forward reactions are considered.
+
std::unique_ptr< partition::PartitionFunction > m_partitionFunction
Partition function for the network.
void setNetworkReactions(const reaction::LogicalReactionSet &reactions) override
-
-
void setUseReverseReactions(bool useReverse)
+
+
void setUseReverseReactions(bool useReverse)
void populateSpeciesToIndexMap()
Populates the species-to-index map.
-
-
screening::ScreeningType m_screeningType
Screening type for the reaction network. Default to no screening.
-
fourdst::composition::Composition update(const NetIn &netIn) override
Update the internal state of the engine.
-
std::vector< PrecomputedReaction > m_precomputedReactions
Precomputed reactions for efficiency.
-
std::unordered_map< std::string_view, reaction::Reaction * > m_reactionIDMap
Map from reaction ID to REACLIBReaction. //PERF: This makes copies of REACLIBReaction and could be a ...
-
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesTimescales(const std::vector< double > &Y, double T9, double rho) const override
Computes timescales for all species in the network.
-
screening::ScreeningType getScreeningModel() const override
Get the current electron screening model.
-
int getStoichiometryMatrixEntry(const int speciesIndex, const int reactionIndex) const override
Gets an entry from the stoichiometry matrix.
-
void setPrecomputation(bool precompute)
-
-
void setScreeningModel(screening::ScreeningType) override
Set the electron screening model.
-
std::vector< std::unique_ptr< AtomicReverseRate > > m_atomicReverseRates
-
void exportToCSV(const std::string &filename) const
Exports the network to a CSV file for analysis.
-
static std::unordered_map< fourdst::atomic::Species, int > getNetReactionStoichiometry(const reaction::Reaction &reaction)
Gets the net stoichiometry for a given reaction.
+
+
screening::ScreeningType m_screeningType
Screening type for the reaction network. Default to no screening.
+
fourdst::composition::Composition update(const NetIn &netIn) override
Update the internal state of the engine.
+
std::vector< PrecomputedReaction > m_precomputedReactions
Precomputed reactions for efficiency.
+
std::unordered_map< std::string_view, reaction::Reaction * > m_reactionIDMap
Map from reaction ID to REACLIBReaction. //PERF: This makes copies of REACLIBReaction and could be a ...
+
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesTimescales(const std::vector< double > &Y, double T9, double rho) const override
Computes timescales for all species in the network.
+
screening::ScreeningType getScreeningModel() const override
Get the current electron screening model.
+
int getStoichiometryMatrixEntry(const int speciesIndex, const int reactionIndex) const override
Gets an entry from the stoichiometry matrix.
+
void setPrecomputation(bool precompute)
+
+
void setScreeningModel(screening::ScreeningType) override
Set the electron screening model.
+
std::vector< std::unique_ptr< AtomicReverseRate > > m_atomicReverseRates
+
void exportToCSV(const std::string &filename) const
Exports the network to a CSV file for analysis.
+
static std::unordered_map< fourdst::atomic::Species, int > getNetReactionStoichiometry(const reaction::Reaction &reaction)
Gets the net stoichiometry for a given reaction.
void reserveJacobianMatrix() const
Reserves space for the Jacobian matrix.
-
int getSpeciesIndex(const fourdst::atomic::Species &species) const override
-
double calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< double > &Y, const double T9, const double rho) const override
Calculates the molar reaction flow for a given reaction.
-
-
std::vector< fourdst::atomic::Species > m_networkSpecies
Vector of unique species in the network.
-
void recordADTape()
Records the AD tape for the right-hand side of the ODE.
-
StepDerivatives< double > calculateAllDerivativesUsingPrecomputation(const std::vector< double > &Y_in, const std::vector< double > &bare_rates, const std::vector< double > &bare_reverse_rates, double T9, double rho) const
+
int getSpeciesIndex(const fourdst::atomic::Species &species) const override
+
double calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< double > &Y, const double T9, const double rho) const override
Calculates the molar reaction flow for a given reaction.
+
+
std::vector< fourdst::atomic::Species > m_networkSpecies
Vector of unique species in the network.
+
void recordADTape()
Records the AD tape for the right-hand side of the ODE.
+
StepDerivatives< double > calculateAllDerivativesUsingPrecomputation(const std::vector< double > &Y_in, const std::vector< double > &bare_rates, const std::vector< double > &bare_reverse_rates, double T9, double rho) const
bool involvesSpecies(const fourdst::atomic::Species &species) const
Checks if a given species is involved in the network.
std::expected< StepDerivatives< double >, expectations::StaleEngineError > calculateRHSAndEnergy(const std::vector< double > &Y, const double T9, const double rho) const override
Calculates the right-hand side (dY/dt) and energy generation rate.
-
reaction::LogicalReactionSet m_reactions
Set of REACLIB reactions in the network.
+
reaction::LogicalReactionSet m_reactions
Set of REACLIB reactions in the network.
void syncInternalMaps()
Synchronizes the internal maps.
bool validateConservation() const
Validates mass and charge conservation across all reactions.
-
void generateJacobianMatrix(const std::vector< double > &Y_dynamic, const double T9, const double rho) const override
Generates the Jacobian matrix for the current state.
-
boost::numeric::ublas::compressed_matrix< int > m_stoichiometryMatrix
Stoichiometry matrix (species x reactions).
+
void generateJacobianMatrix(const std::vector< double > &Y_dynamic, const double T9, const double rho) const override
Generates the Jacobian matrix for the current state.
+
boost::numeric::ublas::compressed_matrix< int > m_stoichiometryMatrix
Stoichiometry matrix (species x reactions).
const reaction::LogicalReactionSet & getNetworkReactions() const override
Gets the set of logical reactions in the network.
-
std::unordered_map< fourdst::atomic::Species, size_t > m_speciesToIndexMap
Map from species to their index in the stoichiometry matrix.
-
void rebuild(const fourdst::composition::Composition &comp, const BuildDepthType depth) override
-
void exportToDot(const std::string &filename) const
Exports the network to a DOT file for visualization.
-
const partition::PartitionFunction & getPartitionFunction() const
-
bool isUsingReverseReactions() const
-
PrimingReport primeEngine(const NetIn &netIn) override
-
void generateStoichiometryMatrix() override
Generates the stoichiometry matrix for the network.
+
std::unordered_map< fourdst::atomic::Species, size_t > m_speciesToIndexMap
Map from species to their index in the stoichiometry matrix.
+
void rebuild(const fourdst::composition::Composition &comp, const BuildDepthType depth) override
+
void exportToDot(const std::string &filename) const
Exports the network to a DOT file for visualization.
+
const partition::PartitionFunction & getPartitionFunction() const
+
bool isUsingReverseReactions() const
+
PrimingReport primeEngine(const NetIn &netIn) override
+
void generateStoichiometryMatrix() override
Generates the stoichiometry matrix for the network.
void collectNetworkSpecies()
Collects the unique species in the network.
-
void validateComposition(const fourdst::composition::Composition &composition, double culling, double T9)
Validates the composition against the current reaction set.
-
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesDestructionTimescales(const std::vector< double > &Y, double T9, double rho) const override
-
bool isStale(const NetIn &netIn) override
-
std::unique_ptr< screening::ScreeningModel > m_screeningModel
-
double calculateReverseRateTwoBodyDerivative(const reaction::Reaction &reaction, const double T9, const double reverseRate) const
-
StepDerivatives< T > calculateAllDerivatives(const std::vector< T > &Y_in, T T9, T rho) const
Calculates all derivatives (dY/dt) and the energy generation rate.
+
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesDestructionTimescales(const std::vector< double > &Y, double T9, double rho) const override
+
bool isStale(const NetIn &netIn) override
+
std::unique_ptr< screening::ScreeningModel > m_screeningModel
+
double calculateReverseRateTwoBodyDerivative(const reaction::Reaction &reaction, const double T9, const double reverseRate) const
+
StepDerivatives< T > calculateAllDerivatives(const std::vector< T > &Y_in, T T9, T rho) const
Calculates all derivatives (dY/dt) and the energy generation rate.
GraphEngine(const fourdst::composition::Composition &composition, const BuildDepthType=NetworkBuildDepth::Full)
Constructs a GraphEngine from a composition.
Abstract interface for evaluating nuclear partition functions.
Represents a "logical" reaction that aggregates rates from multiple sources.
@@ -776,34 +756,33 @@ $(function(){initNavTree('engine__graph_8h_source.html',''); initResizable(true)
@ BARE
No screening applied. The screening factor is always 1.0.
-
CppAD::AD< double > ADDouble
Alias for CppAD AD type for double precision.
+
CppAD::AD< double > ADDouble
Alias for CppAD AD type for double precision.
std::variant< NetworkBuildDepth, int > BuildDepthType
Variant specifying either a predefined NetworkBuildDepth or a custom integer depth.
std::vector< std::pair< size_t, size_t > > SparsityPattern
-
static constexpr double MIN_ABUNDANCE_THRESHOLD
Minimum abundance threshold below which species are ignored.
-
static constexpr double MIN_DENSITY_THRESHOLD
Minimum density threshold below which reactions are ignored.
-
static constexpr double MIN_JACOBIAN_THRESHOLD
Minimum value for Jacobian matrix entries.
-
+
static constexpr double MIN_ABUNDANCE_THRESHOLD
Minimum abundance threshold below which species are ignored.
+
static constexpr double MIN_DENSITY_THRESHOLD
Minimum density threshold below which reactions are ignored.
+
static constexpr double MIN_JACOBIAN_THRESHOLD
Minimum value for Jacobian matrix entries.
Defines classes for representing and managing nuclear reactions.
-
-
std::vector< int > reactant_powers
-
std::vector< int > product_powers
Powers of each unique product in the reverse reaction.
-
std::vector< size_t > affected_species_indices
-
std::vector< size_t > unique_reactant_indices
-
double reverse_symmetry_factor
Symmetry factor for reverse reactions.
-
std::vector< int > stoichiometric_coefficients
-
-
std::vector< size_t > unique_product_indices
Unique product indices for reverse reactions.
-
-
-
const double kB
Boltzmann constant in erg/K.
-
const double u
Atomic mass unit in g.
-
const double Na
Avogadro's number.
-
const double c
Speed of light in cm/s.
+
+
std::vector< int > reactant_powers
+
std::vector< int > product_powers
Powers of each unique product in the reverse reaction.
+
std::vector< size_t > affected_species_indices
+
std::vector< size_t > unique_reactant_indices
+
double reverse_symmetry_factor
Symmetry factor for reverse reactions.
+
std::vector< int > stoichiometric_coefficients
+
+
std::vector< size_t > unique_product_indices
Unique product indices for reverse reactions.
+
+
+
const double kB
Boltzmann constant in erg/K.
+
const double u
Atomic mass unit in g.
+
const double Na
Avogadro's number.
+
const double c
Speed of light in cm/s.
Captures the result of a network priming operation.
Structure holding derivatives and energy generation for a network step.
diff --git a/docs/html/engine__multiscale_8cpp_source.html b/docs/html/engine__multiscale_8cpp_source.html
index 68e165c9..1a0937b5 100644
--- a/docs/html/engine__multiscale_8cpp_source.html
+++ b/docs/html/engine__multiscale_8cpp_source.html
@@ -1842,7 +1842,7 @@ $(function(){initNavTree('engine__multiscale_8cpp_source.html',''); initResizabl
Abstract class for engines supporting Jacobian and stoichiometry operations.
-
A reaction network engine that uses a graph-based representation.
+
A reaction network engine that uses a graph-based representation.
const std::vector< fourdst::atomic::Species > & getNetworkSpecies() const override
Gets the list of species in the network.
GraphEngine & m_baseEngine
The base engine to which this view delegates calculations.
PrimingReport primeEngine(const NetIn &netIn) override
Primes the engine with a specific species.
diff --git a/docs/html/engine__multiscale_8h_source.html b/docs/html/engine__multiscale_8h_source.html
index d2859293..7c1da546 100644
--- a/docs/html/engine__multiscale_8h_source.html
+++ b/docs/html/engine__multiscale_8h_source.html
@@ -467,7 +467,7 @@ $(function(){initNavTree('engine__multiscale_8h_source.html',''); initResizable(
Abstract class for engines supporting Jacobian and stoichiometry operations.
Abstract base class for a "view" of a reaction network engine.
-
A reaction network engine that uses a graph-based representation.
+
A reaction network engine that uses a graph-based representation.
GraphEngine & m_baseEngine
The base engine to which this view delegates calculations.
PrimingReport primeEngine(const NetIn &netIn) override
Primes the engine with a specific species.
MultiscalePartitioningEngineView(GraphEngine &baseEngine)
Constructs a MultiscalePartitioningEngineView.
diff --git a/docs/html/functions_func_v.html b/docs/html/functions_func_v.html
index bb60d171..1390eb8f 100644
--- a/docs/html/functions_func_v.html
+++ b/docs/html/functions_func_v.html
@@ -102,7 +102,6 @@ $(function(){initNavTree('functions_func_v.html',''); initResizable(true); });
Here is a list of all functions with links to the classes they belong to:
import gridfire
+
+
+
from fourdst.composition import Composition
+
+
symbols = ["H-1" , ...]
+
X = [0.708, ...]
+
+
comp = Composition()
+
comp.registerSymbols(symbols)
+
comp.setMassFraction(X)
+
comp.finalize(true)
-
+
+
netIn = gridfire.types.NetIn
+
netIn.composition = comp
+
netIn.tMax = 1e-3
+
netIn.temperature = 1.5e7
+
netIn.density = 1.6e2
+
netIn.dt0 = 1e-12
+
-
engine.step(dt=1e-3)
-
print(engine.abundances)
-
netOut = engine.evaluate(netIn)
+print(netOut)
+More detailed python usage can be found here
+
A representative workflow often composes multiple engine views to balance accuracy, stability, and performance when integrating stiff nuclear networks:
diff --git a/docs/html/md_docs_2static_2usage.html b/docs/html/md_docs_2static_2usage.html
new file mode 100644
index 00000000..6a320b04
--- /dev/null
+++ b/docs/html/md_docs_2static_2usage.html
@@ -0,0 +1,273 @@
+
+
+
+
+
+
+
+
GridFire: GridFire Python Usage Guide
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ GridFire 0.0.1a
+
+ General Purpose Nuclear Network
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
Loading...
+
Searching...
+
No Matches
+
+
+
+
+
+
+
+
+
This tutorial walks you through installing GridFire’s Python bindings, choosing engines and views thoughtfully, running a simulation, and visualizing your results.
+
+
+
+
The quickest way to get started is:
+
If you want the cutting-edge features or need to hack the C++ backend:
git clone https://github.com/4DSTAR/GridFire.git
+
cd GridFire
+
# Create a virtualenv to isolate dependencies
+
python3 -m venv .venv && source .venv/bin/activate
+
+
# Install Python bindings (meson-python & pybind11 under the hood)
+
pip install .
+
You can also build manually with Meson (generally end users will not need to do this):
meson setup build-python
+
meson compile -C build_gridfire
+
+
+
GridFire’s design balances physical fidelity and performance. Here’s why we pick each component:
+
+GraphEngine : Constructs the full reaction network from Reaclib rates and composition. Use this when:
+You need maximum physical accuracy (no reactions are omitted).
+You are exploring new burning pathways or validating against literature.
+
+MultiscalePartitioningEngineView : Implements the Hix & Thielemann partitioning strategy:
+Fast reactions vs slow reactions are split onto separate kernels. This reduces stiffness by isolating processes on very different timescales.
+Choose when your network spans orders of magnitude in timescales (e.g., rapid proton captures vs. slow beta decays).
+
+AdaptiveEngineView : Dynamically culls low-flow reactions at runtime:
+At each timestep, reactions with negligible contribution are temporarily removed.
+This greatly accelerates large networks without significant loss of accuracy.
+Ideal for long integrations where the active set evolves over time.
+
+Leading-Edge Views :
+NetworkPrimingEngineView to inject seed species and study ignition phenomena. DefinedEngineView to freeze the network to a user-specified subset (e.g., focus on the CNO cycle).
+
+
By composing these views in sequence, you can tailor accuracy vs performance for your scientific question. Commonly one might use a flow like GraphEngine → Partitioning → Adaptive to capture both full-network physics and manageable stiffness.
+
+
+
Adapted from tests/python/test.py
+
import matplotlib.pyplot as plt
+
from gridfire.engine import GraphEngine, MultiscalePartitioningEngineView, AdaptiveEngineView
+
+
from gridfire.type import NetIn
+
from fourdst.composition import Composition
+
+
+
symbols = ["H-1" ,"He-3" ,"He-4" ,"C-12" ,"N-14" ,"O-16" ,"Ne-20" ,"Mg-24" ]
+
abundances = [0.708,2.94e-5,0.276,0.003,0.0011,9.62e-3,1.62e-3,5.16e-4]
+
comp = Composition()
+
comp.registerSymbols(symbols)
+
comp.setMassFraction(symbols, abundances)
+
comp.finalize(normalize=True )
+
+
+
netIn = NetIn()
+
netIn.composition = comp
+
netIn.temperature = 1.5e7
+
netIn.density = 1.6e2
+
netIn.tMax = 3.15e7
+
netIn.dt0 = 1e-12
+
+
+
build_depth = 2
+
baseEngine = GraphEngine(comp, buildDepth=build_depth)
+
baseEngine.setUseReverseReactions(False )
+
+
+
partitionedEngine = MultiscalePartitioningEngineView(baseEngine)
+
+
+
adaptiveEngine = AdaptiveEngineView(partitionedEngine)
+
+
+
solver = DirectNetworkSolver(adaptiveEngine, absTol=1e-12, relTol=1e-8)
+
+
+
+
netOut = solver.evaluate(netIn)
+
+
+
print(f"Final H-1 fraction: {netOut.composition.getMassFraction('H-1')}" )
+
+
Why these choices?
+buildDepth=2 : In Emily’s preliminary tests, depth=2 captures key reaction loops without the overhead of a full network. Partition & Adaptive Views : Partitioning reduces stiffness between rapid charged-particle captures and slower β-decays; adaptive culling keeps the working set minimal. Implicit solver : Rosenbrock4 handles stiff systems robustly, letting you push to longer tMax.
+
+
+
GridFire engines and views provide built-in export methods for Graphviz DOT and CSV formats:
+
+
baseEngine.exportToDot('network.dot' )
+
+
+
+
+
partitionedEngine.exportToDot('partitioned.dot' )
+
+
+
baseEngine.exportToCSV('network.csv' )
+
You can then use tools like Graphviz or pandas:
# Convert DOT to PNG
+
dot -Tpng network.dot -o network.png
+
import pandas as pd
+
+
+
df = pd.read_csv('network.csv' )
+
print(df.head())
+
For time-series data, record intermediates with an observer and save with pandas or numpy:
import pandas as pd
+
+
+
df = pd.DataFrame({'time' : t, 'H-1' : X_H1})
+
df.to_csv('H1_evolution.csv' , index=False )
+
Then plot in pandas or Excel for custom figures.
+
+
+
+Custom Partition Functions : In Python, subclass gridfire.partition.PartitionFunction evaluate, supports, and clone to implement new weighting schemes. Parameter Studies : Loop over buildDepth, solver tolerances, or initial compositions to get a sense of the sensitity of the network to input conditions or build a monte carlo grid. Error Handling : try :
+
results = solver.evaluate(netIn)
+
except GridFireRuntimeError as e:
+
print('Fatal engine error:' , e)
+
except GridFireValueError as e:
+
print('Invalid input:' , e)
+
+
For full API details, consult the docstrings in src/python/ and the C++ implementation in src/lib/. Enjoy exploring nuclear astrophysics with GridFire!
+
+
+
+
+
+
+
diff --git a/docs/html/menudata.js b/docs/html/menudata.js
index 08f6b909..2b8393a0 100644
--- a/docs/html/menudata.js
+++ b/docs/html/menudata.js
@@ -24,6 +24,7 @@
*/
var menudata={children:[
{text:"Main Page",url:"index.html"},
+{text:"Related Pages",url:"pages.html"},
{text:"Namespaces",url:"namespaces.html",children:[
{text:"Namespace List",url:"namespaces.html"},
{text:"Namespace Members",url:"namespacemembers.html",children:[
diff --git a/docs/html/namespacegridfire.html b/docs/html/namespacegridfire.html
index e97a9157..5e084d1c 100644
--- a/docs/html/namespacegridfire.html
+++ b/docs/html/namespacegridfire.html
@@ -265,8 +265,6 @@ Functions
static bool s_debug = false static constexpr double MIN_DENSITY_THRESHOLD = 1e-18 Minimum density threshold below which reactions are ignored. Alias for CppAD AD type for double precision.
This alias simplifies the use of the CppAD automatic differentiation type.
-Definition at line 45 of file engine_graph.h .
+Definition at line 44 of file engine_graph.h .
@@ -824,7 +822,7 @@ Resolved integer depth from maxLayers must not be zero.
Minimum abundance threshold below which species are ignored.
Species with abundances below this threshold are treated as zero in reaction rate calculations. This helps to improve performance by avoiding unnecessary calculations for trace species.
-Definition at line 67 of file engine_graph.h .
+Definition at line 66 of file engine_graph.h .
@@ -851,7 +849,7 @@ Resolved integer depth from maxLayers must not be zero.
Minimum density threshold below which reactions are ignored.
Reactions are not calculated if the density falls below this threshold. This helps to improve performance by avoiding unnecessary calculations in very low-density regimes.
-Definition at line 58 of file engine_graph.h .
+Definition at line 57 of file engine_graph.h .
@@ -878,7 +876,7 @@ Resolved integer depth from maxLayers must not be zero.
Minimum value for Jacobian matrix entries.
Jacobian matrix entries with absolute values below this threshold are treated as zero to maintain sparsity and improve performance.
-Definition at line 75 of file engine_graph.h .
+Definition at line 74 of file engine_graph.h .
@@ -923,30 +921,6 @@ Resolved integer depth from maxLayers must not be zero.
Definition at line 47 of file reporting.h .
-
-
-◆
-
-
-
-
-
-
- bool gridfire::s_debug = false
-
-
-
-
-static
-
-
-
s_all_reaclib_reactions_ptr : gridfire::reaclib
-s_debug : gridfire
s_initialized : gridfire::reaclib
s_operator_parens_called : gridfire
ScreeningType : gridfire::screening
diff --git a/docs/html/namespacemembers_vars.html b/docs/html/namespacemembers_vars.html
index b5126642..cc5450b0 100644
--- a/docs/html/namespacemembers_vars.html
+++ b/docs/html/namespacemembers_vars.html
@@ -108,7 +108,6 @@ $(function(){initNavTree('namespacemembers_vars.html',''); initResizable(true);
PrimingReportStatusStrings : gridfire
RT_TEMPERATURE_GRID_T9 : gridfire::partition
s_all_reaclib_reactions_ptr : gridfire::reaclib
-s_debug : gridfire
s_initialized : gridfire::reaclib
s_operator_parens_called : gridfire
stringToBasePartitionType : gridfire::partition
diff --git a/docs/html/navtreedata.js b/docs/html/navtreedata.js
index 7a474bfa..6ece5967 100644
--- a/docs/html/navtreedata.js
+++ b/docs/html/navtreedata.js
@@ -25,7 +25,7 @@
var NAVTREE =
[
[ "GridFire", "index.html", [
- [ "Namespaces", "namespaces.html", [
+ [ "GridFire Python Usage Guide", "md_docs_2static_2usage.html", [
[ "Funding", "index.html#autotoc_md1", null ],
[ "Build and Installation Instructions", "index.html#autotoc_md2", [
[ "Prerequisites", "index.html#autotoc_md3", null ],
@@ -52,6 +52,16 @@ var NAVTREE =
] ],
[ "Common Workflow Example", "index.html#autotoc_md21", null ],
[ "Related Projects", "index.html#autotoc_md22", null ],
+ [ "Installation", "md_docs_2static_2usage.html#autotoc_md25", [
+ [ "1.1 PyPI Release", "md_docs_2static_2usage.html#autotoc_md26", null ],
+ [ "1.2 Development from Source", "md_docs_2static_2usage.html#autotoc_md27", null ]
+ ] ],
+ [ "Why These Engines and Views?", "md_docs_2static_2usage.html#autotoc_md29", null ],
+ [ "Step-by-Step Example", "md_docs_2static_2usage.html#autotoc_md31", null ],
+ [ "Visualizing Reaction Networks", "md_docs_2static_2usage.html#autotoc_md33", null ],
+ [ "Beyond the Basics", "md_docs_2static_2usage.html#autotoc_md35", null ]
+ ] ],
+ [ "Namespaces", "namespaces.html", [
[ "Namespace List", "namespaces.html", "namespaces_dup" ],
[ "Namespace Members", "namespacemembers.html", [
[ "All", "namespacemembers.html", null ],
@@ -94,12 +104,12 @@ var NAVTREEINDEX =
[
"_2_users_2tboudreaux_2_programming_24_d_s_t_a_r_2_grid_fire_2src_2include_2gridfire_2engine_2engine_approx8_8h-example.html",
"classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f",
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb",
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099",
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a54c8cd7c34564277fe28eefc623f666e",
-"functions_k.html",
-"py__screening_8cpp.html#a4c5a7b887f31226ce0b82409f819833b",
-"structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63"
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044",
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937",
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5962968fe478c79250e9d88d80a87600",
+"functions_m.html",
+"py__partition_8cpp.html",
+"structgridfire_1_1_q_s_e_cache_key.html#a711acccecadd93495fd08c81838be2d8"
];
var SYNCONMSG = 'click to disable panel synchronization';
diff --git a/docs/html/navtreeindex0.js b/docs/html/navtreeindex0.js
index 2f2ce15d..8a080171 100644
--- a/docs/html/navtreeindex0.js
+++ b/docs/html/navtreeindex0.js
@@ -1,253 +1,253 @@
var NAVTREEINDEX0 =
{
-"_2_users_2tboudreaux_2_programming_24_d_s_t_a_r_2_grid_fire_2src_2include_2gridfire_2engine_2engine_approx8_8h-example.html":[4,0],
-"annotated.html":[2,0],
-"bindings_8cpp.html":[3,0,1,2,10],
-"bindings_8cpp.html#aa8955e3a8d1ea2d94e8a2c941a12c03f":[3,0,1,2,10,0],
-"bindings_8cpp_source.html":[3,0,1,2,10],
-"building_8h.html":[3,0,1,0,0,0,1,0],
-"building_8h_source.html":[3,0,1,0,0,0,1,0],
-"class_py_dynamic_engine.html":[2,0,2],
-"class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3":[2,0,2,10],
-"class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22":[2,0,2,12],
-"class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159":[2,0,2,6],
-"class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9":[2,0,2,4],
-"class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03":[2,0,2,21],
-"class_py_dynamic_engine.html#a2ee1d745c1c21b9fcb652c96c42f1091":[2,0,2,11],
-"class_py_dynamic_engine.html#a3d30a9116825ab2c5c209bc2712126bc":[2,0,2,17],
-"class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14":[2,0,2,14],
-"class_py_dynamic_engine.html#a5988cfba247631ba6c00795cafda9a38":[2,0,2,7],
-"class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a":[2,0,2,1],
-"class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d":[2,0,2,2],
-"class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac":[2,0,2,15],
-"class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a":[2,0,2,0],
-"class_py_dynamic_engine.html#aa0f1fd3f0c0185395193d1b6897d64c5":[2,0,2,3],
-"class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83":[2,0,2,13],
-"class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5":[2,0,2,9],
-"class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878":[2,0,2,16],
-"class_py_dynamic_engine.html#adba68716d832b6100e08d32fbc36f13c":[2,0,2,5],
-"class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8":[2,0,2,20],
-"class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac":[2,0,2,19],
-"class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d":[2,0,2,8],
-"class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6":[2,0,2,18],
-"class_py_dynamic_engine_view.html":[2,0,3],
-"class_py_dynamic_engine_view.html#a51680b135cfc3eea40daf9ef5aa903e0":[2,0,3,0],
-"class_py_dynamic_network_solver_strategy.html":[2,0,4],
-"class_py_dynamic_network_solver_strategy.html#a2095abb83ed6229ebb27b4883cec51c4":[2,0,4,1],
-"class_py_dynamic_network_solver_strategy.html#a4a3fce2a9853e7192354834bf2b36159":[2,0,4,0],
-"class_py_engine.html":[2,0,5],
-"class_py_engine.html#a2d240423899e039c2ca688e96f8af1f2":[2,0,5,1],
-"class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d":[2,0,5,0],
-"class_py_engine.html#a73caaa7606e2cdfd1aa82729a78ebb73":[2,0,5,2],
-"class_py_engine_view.html":[2,0,6],
-"class_py_engine_view.html#a3cd83dc57b521c65a14edf70357a8845":[2,0,6,0],
-"class_py_network_file_parser.html":[2,0,7],
-"class_py_network_file_parser.html#afe09d1e5b07110e62cf4c6ec713cff54":[2,0,7,0],
-"class_py_partition_function.html":[2,0,8],
-"class_py_partition_function.html#a07f4d0ff83822dd2800897161d2a3717":[2,0,8,4],
-"class_py_partition_function.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8":[2,0,8,3],
-"class_py_partition_function.html#a260df9689bf698970ebf5104977a3dcf":[2,0,8,2],
-"class_py_partition_function.html#a83aca0bc261734b7d3df8269f730c69b":[2,0,8,1],
-"class_py_partition_function.html#af918b357e38fb82499ad53584557c43d":[2,0,8,0],
-"class_py_screening.html":[2,0,9],
-"class_py_screening.html#a2b8756c197eb89e77cb6dd231c979315":[2,0,9,1],
-"class_py_screening.html#a5539d59311c778cf7f0006acc8f84ade":[2,0,9,0],
-"classes.html":[2,1],
-"classgridfire_1_1_adaptive_engine_view.html":[0,8,0,10],
-"classgridfire_1_1_adaptive_engine_view.html":[2,0,0,9],
-"classgridfire_1_1_adaptive_engine_view.html#a03fc187d3d306b9058103b9522cbbaeb":[0,8,0,10,13],
-"classgridfire_1_1_adaptive_engine_view.html#a03fc187d3d306b9058103b9522cbbaeb":[2,0,0,9,13],
-"classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31":[0,8,0,10,6],
-"classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31":[2,0,0,9,6],
-"classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f":[0,8,0,10,19],
-"classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f":[2,0,0,9,19],
-"classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b":[0,8,0,10,12],
-"classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b":[2,0,0,9,12],
-"classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c":[0,8,0,10,17],
-"classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c":[2,0,0,9,17],
-"classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30":[0,8,0,10,39],
-"classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30":[2,0,0,9,39],
-"classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800":[0,8,0,10,36],
-"classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800":[2,0,0,9,36],
-"classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de":[0,8,0,10,42],
-"classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de":[2,0,0,9,42],
-"classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111":[0,8,0,10,14],
-"classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111":[2,0,0,9,14],
-"classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8":[0,8,0,10,27],
-"classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8":[2,0,0,9,27],
-"classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd":[0,8,0,10,34],
-"classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd":[2,0,0,9,34],
-"classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44":[0,8,0,10,28],
-"classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44":[2,0,0,9,28],
-"classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08":[0,8,0,10,10],
-"classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08":[2,0,0,9,10],
-"classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58":[0,8,0,10,16],
-"classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58":[2,0,0,9,16],
-"classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8":[0,8,0,10,38],
-"classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8":[2,0,0,9,38],
-"classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9":[0,8,0,10,22],
-"classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9":[2,0,0,9,22],
-"classgridfire_1_1_adaptive_engine_view.html#a4ff60b5214ec0bdaf683feb6615573a5":[0,8,0,10,3],
-"classgridfire_1_1_adaptive_engine_view.html#a4ff60b5214ec0bdaf683feb6615573a5":[2,0,0,9,3],
-"classgridfire_1_1_adaptive_engine_view.html#a522e78bce9ff062939572248d57f8cea":[0,8,0,10,20],
-"classgridfire_1_1_adaptive_engine_view.html#a522e78bce9ff062939572248d57f8cea":[2,0,0,9,20],
-"classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103":[0,8,0,10,2],
-"classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103":[2,0,0,9,2],
-"classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093":[0,8,0,10,43],
-"classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093":[2,0,0,9,43],
-"classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e":[0,8,0,10,40],
-"classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e":[2,0,0,9,40],
-"classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9":[0,8,0,10,23],
-"classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9":[2,0,0,9,23],
-"classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1":[0,8,0,10,25],
-"classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1":[2,0,0,9,25],
-"classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3":[0,8,0,10,30],
-"classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3":[2,0,0,9,30],
-"classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672":[0,8,0,10,32],
-"classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672":[2,0,0,9,32],
-"classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019":[0,8,0,10,29],
-"classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019":[2,0,0,9,29],
-"classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f":[0,8,0,10,31],
-"classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f":[2,0,0,9,31],
-"classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c":[0,8,0,10,8],
-"classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c":[2,0,0,9,8],
-"classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d":[0,8,0,10,9],
-"classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d":[2,0,0,9,9],
-"classgridfire_1_1_adaptive_engine_view.html#a9055feb245524a5a9549ace935f059ff":[0,8,0,10,21],
-"classgridfire_1_1_adaptive_engine_view.html#a9055feb245524a5a9549ace935f059ff":[2,0,0,9,21],
-"classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101":[0,8,0,10,26],
-"classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101":[2,0,0,9,26],
-"classgridfire_1_1_adaptive_engine_view.html#aa79fb382c98461b02a2c30668491e6c5":[0,8,0,10,11],
-"classgridfire_1_1_adaptive_engine_view.html#aa79fb382c98461b02a2c30668491e6c5":[2,0,0,9,11],
-"classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b":[0,8,0,10,33],
-"classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b":[2,0,0,9,33],
-"classgridfire_1_1_adaptive_engine_view.html#abdbaf4b87629efe43ac1255dad424c0c":[0,8,0,10,5],
-"classgridfire_1_1_adaptive_engine_view.html#abdbaf4b87629efe43ac1255dad424c0c":[2,0,0,9,5],
-"classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193":[0,8,0,10,41],
-"classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193":[2,0,0,9,41],
-"classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1":[0,8,0,10,18],
-"classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1":[2,0,0,9,18],
-"classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88":[0,8,0,10,24],
-"classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88":[2,0,0,9,24],
-"classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455":[0,8,0,10,4],
-"classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455":[2,0,0,9,4],
-"classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40":[0,8,0,10,35],
-"classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40":[2,0,0,9,35],
-"classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c":[0,8,0,10,15],
-"classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c":[2,0,0,9,15],
-"classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940":[0,8,0,10,37],
-"classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940":[2,0,0,9,37],
-"classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5":[0,8,0,10,7],
-"classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5":[2,0,0,9,7],
-"classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3":[0,8,0,10,1],
-"classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3":[2,0,0,9,1],
-"classgridfire_1_1_defined_engine_view.html":[0,8,0,11],
-"classgridfire_1_1_defined_engine_view.html":[2,0,0,10],
-"classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460":[0,8,0,11,23],
-"classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460":[2,0,0,10,23],
-"classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032":[0,8,0,11,1],
-"classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032":[2,0,0,10,1],
-"classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211":[0,8,0,11,11],
-"classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211":[2,0,0,10,11],
-"classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382":[0,8,0,11,31],
-"classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382":[2,0,0,10,31],
-"classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b":[0,8,0,11,9],
-"classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b":[2,0,0,10,9],
-"classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873":[0,8,0,11,18],
-"classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873":[2,0,0,10,18],
-"classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965":[0,8,0,11,28],
-"classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965":[2,0,0,10,28],
-"classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c":[0,8,0,11,12],
-"classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c":[2,0,0,10,12],
-"classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491":[0,8,0,11,13],
-"classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491":[2,0,0,10,13],
-"classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d":[0,8,0,11,2],
-"classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d":[2,0,0,10,2],
-"classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3":[0,8,0,11,32],
-"classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3":[2,0,0,10,32],
-"classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0":[0,8,0,11,27],
-"classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0":[2,0,0,10,27],
-"classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843":[0,8,0,11,20],
-"classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843":[2,0,0,10,20],
-"classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae":[0,8,0,11,29],
-"classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae":[2,0,0,10,29],
-"classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484":[0,8,0,11,8],
-"classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484":[2,0,0,10,8],
-"classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195":[0,8,0,11,30],
-"classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195":[2,0,0,10,30],
-"classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2":[0,8,0,11,19],
-"classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2":[2,0,0,10,19],
-"classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87":[0,8,0,11,17],
-"classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87":[2,0,0,10,17],
-"classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d":[0,8,0,11,24],
-"classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d":[2,0,0,10,24],
-"classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92":[0,8,0,11,0],
-"classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92":[2,0,0,10,0],
-"classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985":[0,8,0,11,5],
-"classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985":[2,0,0,10,5],
-"classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1":[0,8,0,11,21],
-"classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1":[2,0,0,10,21],
-"classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68":[0,8,0,11,4],
-"classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68":[2,0,0,10,4],
-"classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258":[0,8,0,11,25],
-"classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258":[2,0,0,10,25],
-"classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3":[0,8,0,11,14],
-"classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3":[2,0,0,10,14],
-"classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72":[0,8,0,11,15],
-"classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72":[2,0,0,10,15],
-"classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e":[0,8,0,11,34],
-"classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e":[2,0,0,10,34],
-"classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6":[0,8,0,11,7],
-"classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6":[2,0,0,10,7],
-"classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae":[0,8,0,11,6],
-"classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae":[2,0,0,10,6],
-"classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e":[0,8,0,11,3],
-"classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e":[2,0,0,10,3],
-"classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d":[0,8,0,11,10],
-"classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d":[2,0,0,10,10],
-"classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae":[0,8,0,11,26],
-"classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae":[2,0,0,10,26],
-"classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a":[0,8,0,11,22],
-"classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a":[2,0,0,10,22],
-"classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2":[0,8,0,11,16],
-"classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2":[2,0,0,10,16],
-"classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd":[0,8,0,11,33],
-"classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd":[2,0,0,10,33],
-"classgridfire_1_1_dynamic_engine.html":[0,8,0,12],
-"classgridfire_1_1_dynamic_engine.html":[2,0,0,11],
-"classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9":[0,8,0,12,4],
-"classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9":[2,0,0,11,4],
-"classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07":[0,8,0,12,5],
-"classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07":[2,0,0,11,5],
-"classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e":[0,8,0,12,14],
-"classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e":[2,0,0,11,14],
-"classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d":[0,8,0,12,1],
-"classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d":[2,0,0,11,1],
-"classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd":[0,8,0,12,17],
-"classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd":[2,0,0,11,17],
-"classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf":[0,8,0,12,15],
-"classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf":[2,0,0,11,15],
-"classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a":[0,8,0,12,13],
-"classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a":[2,0,0,11,13],
-"classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785":[0,8,0,12,0],
-"classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785":[2,0,0,11,0],
-"classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813":[0,8,0,12,10],
-"classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813":[2,0,0,11,10],
-"classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6":[0,8,0,12,8],
-"classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6":[2,0,0,11,8],
-"classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0":[0,8,0,12,7],
-"classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0":[2,0,0,11,7],
-"classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7":[0,8,0,12,2],
-"classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7":[2,0,0,11,2],
-"classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398":[0,8,0,12,12],
-"classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398":[2,0,0,11,12],
-"classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a":[0,8,0,12,18],
-"classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a":[2,0,0,11,18],
-"classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037":[0,8,0,12,6],
-"classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037":[2,0,0,11,6],
-"classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9":[0,8,0,12,9],
-"classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9":[2,0,0,11,9],
-"classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f":[0,8,0,12,3],
-"classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f":[2,0,0,11,3],
-"classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f":[0,8,0,12,11]
+"_2_users_2tboudreaux_2_programming_24_d_s_t_a_r_2_grid_fire_2src_2include_2gridfire_2engine_2engine_approx8_8h-example.html":[5,0],
+"annotated.html":[3,0],
+"bindings_8cpp.html":[4,0,1,2,10],
+"bindings_8cpp.html#aa8955e3a8d1ea2d94e8a2c941a12c03f":[4,0,1,2,10,0],
+"bindings_8cpp_source.html":[4,0,1,2,10],
+"building_8h.html":[4,0,1,0,0,0,1,0],
+"building_8h_source.html":[4,0,1,0,0,0,1,0],
+"class_py_dynamic_engine.html":[3,0,2],
+"class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3":[3,0,2,10],
+"class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22":[3,0,2,12],
+"class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159":[3,0,2,6],
+"class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9":[3,0,2,4],
+"class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03":[3,0,2,21],
+"class_py_dynamic_engine.html#a2ee1d745c1c21b9fcb652c96c42f1091":[3,0,2,11],
+"class_py_dynamic_engine.html#a3d30a9116825ab2c5c209bc2712126bc":[3,0,2,17],
+"class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14":[3,0,2,14],
+"class_py_dynamic_engine.html#a5988cfba247631ba6c00795cafda9a38":[3,0,2,7],
+"class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a":[3,0,2,1],
+"class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d":[3,0,2,2],
+"class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac":[3,0,2,15],
+"class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a":[3,0,2,0],
+"class_py_dynamic_engine.html#aa0f1fd3f0c0185395193d1b6897d64c5":[3,0,2,3],
+"class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83":[3,0,2,13],
+"class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5":[3,0,2,9],
+"class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878":[3,0,2,16],
+"class_py_dynamic_engine.html#adba68716d832b6100e08d32fbc36f13c":[3,0,2,5],
+"class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8":[3,0,2,20],
+"class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac":[3,0,2,19],
+"class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d":[3,0,2,8],
+"class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6":[3,0,2,18],
+"class_py_dynamic_engine_view.html":[3,0,3],
+"class_py_dynamic_engine_view.html#a51680b135cfc3eea40daf9ef5aa903e0":[3,0,3,0],
+"class_py_dynamic_network_solver_strategy.html":[3,0,4],
+"class_py_dynamic_network_solver_strategy.html#a2095abb83ed6229ebb27b4883cec51c4":[3,0,4,1],
+"class_py_dynamic_network_solver_strategy.html#a4a3fce2a9853e7192354834bf2b36159":[3,0,4,0],
+"class_py_engine.html":[3,0,5],
+"class_py_engine.html#a2d240423899e039c2ca688e96f8af1f2":[3,0,5,1],
+"class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d":[3,0,5,0],
+"class_py_engine.html#a73caaa7606e2cdfd1aa82729a78ebb73":[3,0,5,2],
+"class_py_engine_view.html":[3,0,6],
+"class_py_engine_view.html#a3cd83dc57b521c65a14edf70357a8845":[3,0,6,0],
+"class_py_network_file_parser.html":[3,0,7],
+"class_py_network_file_parser.html#afe09d1e5b07110e62cf4c6ec713cff54":[3,0,7,0],
+"class_py_partition_function.html":[3,0,8],
+"class_py_partition_function.html#a07f4d0ff83822dd2800897161d2a3717":[3,0,8,4],
+"class_py_partition_function.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8":[3,0,8,3],
+"class_py_partition_function.html#a260df9689bf698970ebf5104977a3dcf":[3,0,8,2],
+"class_py_partition_function.html#a83aca0bc261734b7d3df8269f730c69b":[3,0,8,1],
+"class_py_partition_function.html#af918b357e38fb82499ad53584557c43d":[3,0,8,0],
+"class_py_screening.html":[3,0,9],
+"class_py_screening.html#a2b8756c197eb89e77cb6dd231c979315":[3,0,9,1],
+"class_py_screening.html#a5539d59311c778cf7f0006acc8f84ade":[3,0,9,0],
+"classes.html":[3,1],
+"classgridfire_1_1_adaptive_engine_view.html":[1,0,0,10],
+"classgridfire_1_1_adaptive_engine_view.html":[3,0,0,9],
+"classgridfire_1_1_adaptive_engine_view.html#a03fc187d3d306b9058103b9522cbbaeb":[1,0,0,10,13],
+"classgridfire_1_1_adaptive_engine_view.html#a03fc187d3d306b9058103b9522cbbaeb":[3,0,0,9,13],
+"classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31":[1,0,0,10,6],
+"classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31":[3,0,0,9,6],
+"classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f":[1,0,0,10,19],
+"classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f":[3,0,0,9,19],
+"classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b":[1,0,0,10,12],
+"classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b":[3,0,0,9,12],
+"classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c":[1,0,0,10,17],
+"classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c":[3,0,0,9,17],
+"classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30":[1,0,0,10,39],
+"classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30":[3,0,0,9,39],
+"classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800":[1,0,0,10,36],
+"classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800":[3,0,0,9,36],
+"classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de":[1,0,0,10,42],
+"classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de":[3,0,0,9,42],
+"classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111":[1,0,0,10,14],
+"classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111":[3,0,0,9,14],
+"classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8":[1,0,0,10,27],
+"classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8":[3,0,0,9,27],
+"classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd":[1,0,0,10,34],
+"classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd":[3,0,0,9,34],
+"classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44":[1,0,0,10,28],
+"classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44":[3,0,0,9,28],
+"classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08":[1,0,0,10,10],
+"classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08":[3,0,0,9,10],
+"classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58":[1,0,0,10,16],
+"classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58":[3,0,0,9,16],
+"classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8":[1,0,0,10,38],
+"classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8":[3,0,0,9,38],
+"classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9":[1,0,0,10,22],
+"classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9":[3,0,0,9,22],
+"classgridfire_1_1_adaptive_engine_view.html#a4ff60b5214ec0bdaf683feb6615573a5":[1,0,0,10,3],
+"classgridfire_1_1_adaptive_engine_view.html#a4ff60b5214ec0bdaf683feb6615573a5":[3,0,0,9,3],
+"classgridfire_1_1_adaptive_engine_view.html#a522e78bce9ff062939572248d57f8cea":[1,0,0,10,20],
+"classgridfire_1_1_adaptive_engine_view.html#a522e78bce9ff062939572248d57f8cea":[3,0,0,9,20],
+"classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103":[1,0,0,10,2],
+"classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103":[3,0,0,9,2],
+"classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093":[1,0,0,10,43],
+"classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093":[3,0,0,9,43],
+"classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e":[1,0,0,10,40],
+"classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e":[3,0,0,9,40],
+"classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9":[1,0,0,10,23],
+"classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9":[3,0,0,9,23],
+"classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1":[1,0,0,10,25],
+"classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1":[3,0,0,9,25],
+"classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3":[1,0,0,10,30],
+"classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3":[3,0,0,9,30],
+"classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672":[1,0,0,10,32],
+"classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672":[3,0,0,9,32],
+"classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019":[1,0,0,10,29],
+"classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019":[3,0,0,9,29],
+"classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f":[1,0,0,10,31],
+"classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f":[3,0,0,9,31],
+"classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c":[1,0,0,10,8],
+"classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c":[3,0,0,9,8],
+"classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d":[1,0,0,10,9],
+"classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d":[3,0,0,9,9],
+"classgridfire_1_1_adaptive_engine_view.html#a9055feb245524a5a9549ace935f059ff":[1,0,0,10,21],
+"classgridfire_1_1_adaptive_engine_view.html#a9055feb245524a5a9549ace935f059ff":[3,0,0,9,21],
+"classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101":[1,0,0,10,26],
+"classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101":[3,0,0,9,26],
+"classgridfire_1_1_adaptive_engine_view.html#aa79fb382c98461b02a2c30668491e6c5":[1,0,0,10,11],
+"classgridfire_1_1_adaptive_engine_view.html#aa79fb382c98461b02a2c30668491e6c5":[3,0,0,9,11],
+"classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b":[1,0,0,10,33],
+"classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b":[3,0,0,9,33],
+"classgridfire_1_1_adaptive_engine_view.html#abdbaf4b87629efe43ac1255dad424c0c":[1,0,0,10,5],
+"classgridfire_1_1_adaptive_engine_view.html#abdbaf4b87629efe43ac1255dad424c0c":[3,0,0,9,5],
+"classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193":[1,0,0,10,41],
+"classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193":[3,0,0,9,41],
+"classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1":[1,0,0,10,18],
+"classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1":[3,0,0,9,18],
+"classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88":[1,0,0,10,24],
+"classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88":[3,0,0,9,24],
+"classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455":[1,0,0,10,4],
+"classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455":[3,0,0,9,4],
+"classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40":[1,0,0,10,35],
+"classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40":[3,0,0,9,35],
+"classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c":[1,0,0,10,15],
+"classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c":[3,0,0,9,15],
+"classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940":[1,0,0,10,37],
+"classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940":[3,0,0,9,37],
+"classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5":[1,0,0,10,7],
+"classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5":[3,0,0,9,7],
+"classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3":[1,0,0,10,1],
+"classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3":[3,0,0,9,1],
+"classgridfire_1_1_defined_engine_view.html":[1,0,0,11],
+"classgridfire_1_1_defined_engine_view.html":[3,0,0,10],
+"classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460":[1,0,0,11,23],
+"classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460":[3,0,0,10,23],
+"classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032":[1,0,0,11,1],
+"classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032":[3,0,0,10,1],
+"classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211":[1,0,0,11,11],
+"classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211":[3,0,0,10,11],
+"classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382":[1,0,0,11,31],
+"classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382":[3,0,0,10,31],
+"classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b":[1,0,0,11,9],
+"classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b":[3,0,0,10,9],
+"classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873":[1,0,0,11,18],
+"classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873":[3,0,0,10,18],
+"classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965":[1,0,0,11,28],
+"classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965":[3,0,0,10,28],
+"classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c":[1,0,0,11,12],
+"classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c":[3,0,0,10,12],
+"classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491":[1,0,0,11,13],
+"classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491":[3,0,0,10,13],
+"classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d":[1,0,0,11,2],
+"classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d":[3,0,0,10,2],
+"classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3":[1,0,0,11,32],
+"classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3":[3,0,0,10,32],
+"classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0":[1,0,0,11,27],
+"classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0":[3,0,0,10,27],
+"classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843":[1,0,0,11,20],
+"classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843":[3,0,0,10,20],
+"classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae":[1,0,0,11,29],
+"classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae":[3,0,0,10,29],
+"classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484":[1,0,0,11,8],
+"classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484":[3,0,0,10,8],
+"classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195":[1,0,0,11,30],
+"classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195":[3,0,0,10,30],
+"classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2":[1,0,0,11,19],
+"classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2":[3,0,0,10,19],
+"classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87":[1,0,0,11,17],
+"classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87":[3,0,0,10,17],
+"classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d":[1,0,0,11,24],
+"classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d":[3,0,0,10,24],
+"classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92":[1,0,0,11,0],
+"classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92":[3,0,0,10,0],
+"classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985":[1,0,0,11,5],
+"classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985":[3,0,0,10,5],
+"classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1":[1,0,0,11,21],
+"classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1":[3,0,0,10,21],
+"classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68":[1,0,0,11,4],
+"classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68":[3,0,0,10,4],
+"classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258":[1,0,0,11,25],
+"classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258":[3,0,0,10,25],
+"classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3":[1,0,0,11,14],
+"classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3":[3,0,0,10,14],
+"classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72":[1,0,0,11,15],
+"classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72":[3,0,0,10,15],
+"classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e":[1,0,0,11,34],
+"classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e":[3,0,0,10,34],
+"classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6":[1,0,0,11,7],
+"classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6":[3,0,0,10,7],
+"classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae":[1,0,0,11,6],
+"classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae":[3,0,0,10,6],
+"classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e":[1,0,0,11,3],
+"classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e":[3,0,0,10,3],
+"classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d":[1,0,0,11,10],
+"classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d":[3,0,0,10,10],
+"classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae":[1,0,0,11,26],
+"classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae":[3,0,0,10,26],
+"classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a":[1,0,0,11,22],
+"classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a":[3,0,0,10,22],
+"classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2":[1,0,0,11,16],
+"classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2":[3,0,0,10,16],
+"classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd":[1,0,0,11,33],
+"classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd":[3,0,0,10,33],
+"classgridfire_1_1_dynamic_engine.html":[1,0,0,12],
+"classgridfire_1_1_dynamic_engine.html":[3,0,0,11],
+"classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9":[1,0,0,12,4],
+"classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9":[3,0,0,11,4],
+"classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07":[1,0,0,12,5],
+"classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07":[3,0,0,11,5],
+"classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e":[1,0,0,12,14],
+"classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e":[3,0,0,11,14],
+"classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d":[1,0,0,12,1],
+"classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d":[3,0,0,11,1],
+"classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd":[1,0,0,12,17],
+"classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd":[3,0,0,11,17],
+"classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf":[1,0,0,12,15],
+"classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf":[3,0,0,11,15],
+"classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a":[1,0,0,12,13],
+"classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a":[3,0,0,11,13],
+"classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785":[1,0,0,12,0],
+"classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785":[3,0,0,11,0],
+"classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813":[1,0,0,12,10],
+"classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813":[3,0,0,11,10],
+"classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6":[1,0,0,12,8],
+"classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6":[3,0,0,11,8],
+"classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0":[1,0,0,12,7],
+"classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0":[3,0,0,11,7],
+"classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7":[1,0,0,12,2],
+"classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7":[3,0,0,11,2],
+"classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398":[1,0,0,12,12],
+"classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398":[3,0,0,11,12],
+"classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a":[1,0,0,12,18],
+"classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a":[3,0,0,11,18],
+"classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037":[1,0,0,12,6],
+"classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037":[3,0,0,11,6],
+"classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9":[1,0,0,12,9],
+"classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9":[3,0,0,11,9],
+"classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f":[1,0,0,12,3],
+"classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f":[3,0,0,11,3],
+"classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f":[1,0,0,12,11]
};
diff --git a/docs/html/navtreeindex1.js b/docs/html/navtreeindex1.js
index ebb57ca9..11838d62 100644
--- a/docs/html/navtreeindex1.js
+++ b/docs/html/navtreeindex1.js
@@ -1,253 +1,253 @@
var NAVTREEINDEX1 =
{
-"classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f":[2,0,0,11,11],
-"classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f":[0,8,0,12,16],
-"classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f":[2,0,0,11,16],
-"classgridfire_1_1_engine.html":[0,8,0,13],
-"classgridfire_1_1_engine.html":[2,0,0,12],
-"classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3":[0,8,0,13,2],
-"classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3":[2,0,0,12,2],
-"classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037":[0,8,0,13,0],
-"classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037":[2,0,0,12,0],
-"classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb":[0,8,0,13,1],
-"classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb":[2,0,0,12,1],
-"classgridfire_1_1_engine_view.html":[0,8,0,14],
-"classgridfire_1_1_engine_view.html":[2,0,0,13],
-"classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74":[0,8,0,14,0],
-"classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74":[2,0,0,13,0],
-"classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6":[0,8,0,14,1],
-"classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6":[2,0,0,13,1],
-"classgridfire_1_1_file_defined_engine_view.html":[0,8,0,15],
-"classgridfire_1_1_file_defined_engine_view.html":[2,0,0,14],
-"classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500":[0,8,0,15,8],
-"classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500":[2,0,0,14,8],
-"classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b":[0,8,0,15,6],
-"classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b":[2,0,0,14,6],
-"classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187":[0,8,0,15,0],
-"classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187":[2,0,0,14,0],
-"classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362":[0,8,0,15,5],
-"classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362":[2,0,0,14,5],
-"classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd":[0,8,0,15,2],
-"classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd":[2,0,0,14,2],
-"classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432":[0,8,0,15,7],
-"classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432":[2,0,0,14,7],
-"classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08":[0,8,0,15,1],
-"classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08":[2,0,0,14,1],
-"classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718":[0,8,0,15,3],
-"classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718":[2,0,0,14,3],
-"classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f":[0,8,0,15,4],
-"classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f":[2,0,0,14,4],
-"classgridfire_1_1_graph_engine.html":[0,8,0,16],
-"classgridfire_1_1_graph_engine.html":[2,0,0,15],
-"classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f":[0,8,0,16,36],
-"classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f":[2,0,0,15,36],
-"classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755":[0,8,0,16,14],
-"classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755":[2,0,0,15,14],
-"classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28":[0,8,0,16,13],
-"classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28":[2,0,0,15,13],
-"classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767":[0,8,0,16,28],
-"classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767":[2,0,0,15,28],
-"classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e":[0,8,0,16,57],
-"classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e":[2,0,0,15,57],
-"classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4":[0,8,0,16,24],
-"classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4":[2,0,0,15,24],
-"classgridfire_1_1_graph_engine.html#a17774cd9ffcf1ba94019df766a0984a0":[0,8,0,16,12],
-"classgridfire_1_1_graph_engine.html#a17774cd9ffcf1ba94019df766a0984a0":[2,0,0,15,12],
-"classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de":[0,8,0,16,74],
-"classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de":[2,0,0,15,74],
-"classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06":[0,8,0,16,59],
-"classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06":[2,0,0,15,59],
-"classgridfire_1_1_graph_engine.html#a1e7e851dfa21d41c2dc533ba56fc4c7b":[0,8,0,16,5],
-"classgridfire_1_1_graph_engine.html#a1e7e851dfa21d41c2dc533ba56fc4c7b":[2,0,0,15,5],
-"classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891":[0,8,0,16,60],
-"classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891":[2,0,0,15,60],
-"classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567":[0,8,0,16,40],
-"classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567":[2,0,0,15,40],
-"classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f":[0,8,0,16,39],
-"classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f":[2,0,0,15,39],
-"classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746":[0,8,0,16,17],
-"classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746":[2,0,0,15,17],
-"classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876":[0,8,0,16,69],
-"classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876":[2,0,0,15,69],
-"classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910":[0,8,0,16,61],
-"classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910":[2,0,0,15,61],
-"classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c":[0,8,0,16,25],
-"classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c":[2,0,0,15,25],
-"classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827":[0,8,0,16,64],
-"classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827":[2,0,0,15,64],
-"classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc":[0,8,0,16,75],
-"classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc":[2,0,0,15,75],
-"classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e":[0,8,0,16,65],
-"classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e":[2,0,0,15,65],
-"classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0":[0,8,0,16,47],
-"classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0":[2,0,0,15,47],
-"classgridfire_1_1_graph_engine.html#a39d9838ed40bea71ee6c552bb5969026":[0,8,0,16,4],
-"classgridfire_1_1_graph_engine.html#a39d9838ed40bea71ee6c552bb5969026":[2,0,0,15,4],
-"classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18":[0,8,0,16,56],
-"classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18":[2,0,0,15,56],
-"classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197":[0,8,0,16,50],
-"classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197":[2,0,0,15,50],
-"classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391":[0,8,0,16,41],
-"classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391":[2,0,0,15,41],
-"classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53":[0,8,0,16,62],
-"classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53":[2,0,0,15,62],
-"classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80":[0,8,0,16,71],
-"classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80":[2,0,0,15,71],
-"classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6":[0,8,0,16,52],
-"classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6":[2,0,0,15,52],
-"classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3":[0,8,0,16,66],
-"classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3":[2,0,0,15,66],
-"classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3":[0,8,0,16,67],
-"classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3":[2,0,0,15,67],
-"classgridfire_1_1_graph_engine.html#a5e96b5a0b34c8932f0e14eabda57f1a4":[0,8,0,16,11],
-"classgridfire_1_1_graph_engine.html#a5e96b5a0b34c8932f0e14eabda57f1a4":[2,0,0,15,11],
-"classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581":[0,8,0,16,33],
-"classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581":[2,0,0,15,33],
-"classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a":[0,8,0,16,30],
-"classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a":[2,0,0,15,30],
-"classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152":[0,8,0,16,34],
-"classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152":[2,0,0,15,34],
-"classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1":[0,8,0,16,48],
-"classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1":[2,0,0,15,48],
-"classgridfire_1_1_graph_engine.html#a71a3d1181b90c3becdc5d9a3da05b9c9":[0,8,0,16,6],
-"classgridfire_1_1_graph_engine.html#a71a3d1181b90c3becdc5d9a3da05b9c9":[2,0,0,15,6],
-"classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01":[0,8,0,16,58],
-"classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01":[2,0,0,15,58],
-"classgridfire_1_1_graph_engine.html#a8110e687844f921438bb517e1d8ce62f":[0,8,0,16,49],
-"classgridfire_1_1_graph_engine.html#a8110e687844f921438bb517e1d8ce62f":[2,0,0,15,49],
-"classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6":[0,8,0,16,55],
-"classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6":[2,0,0,15,55],
-"classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95":[0,8,0,16,19],
-"classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95":[2,0,0,15,19],
-"classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9":[0,8,0,16,26],
-"classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9":[2,0,0,15,26],
-"classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5":[0,8,0,16,46],
-"classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5":[2,0,0,15,46],
-"classgridfire_1_1_graph_engine.html#a914f6abc61805cddaebcb8f3cf470dda":[0,8,0,16,32],
-"classgridfire_1_1_graph_engine.html#a914f6abc61805cddaebcb8f3cf470dda":[2,0,0,15,32],
-"classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f":[0,8,0,16,10],
-"classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f":[2,0,0,15,10],
-"classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd":[0,8,0,16,42],
-"classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd":[2,0,0,15,42],
-"classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc":[0,8,0,16,63],
-"classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc":[2,0,0,15,63],
-"classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889":[0,8,0,16,45],
-"classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889":[2,0,0,15,45],
-"classgridfire_1_1_graph_engine.html#a9687eef88c97eeb7f8680acb230f8ac1":[0,8,0,16,22],
-"classgridfire_1_1_graph_engine.html#a9687eef88c97eeb7f8680acb230f8ac1":[2,0,0,15,22],
-"classgridfire_1_1_graph_engine.html#a97f98706b51fbe0d167ed81ffe58c438":[0,8,0,16,9],
-"classgridfire_1_1_graph_engine.html#a97f98706b51fbe0d167ed81ffe58c438":[2,0,0,15,9],
-"classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b":[0,8,0,16,35],
-"classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b":[2,0,0,15,35],
-"classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081":[0,8,0,16,16],
-"classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081":[2,0,0,15,16],
-"classgridfire_1_1_graph_engine.html#aaf4d54e4b774ab8ec8eabec006579d31":[0,8,0,16,7],
-"classgridfire_1_1_graph_engine.html#aaf4d54e4b774ab8ec8eabec006579d31":[2,0,0,15,7],
-"classgridfire_1_1_graph_engine.html#acb7c4f5108b0efeae48ad15598e808c3":[0,8,0,16,68],
-"classgridfire_1_1_graph_engine.html#acb7c4f5108b0efeae48ad15598e808c3":[2,0,0,15,68],
-"classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f":[0,8,0,16,51],
-"classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f":[2,0,0,15,51],
-"classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be":[0,8,0,16,54],
-"classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be":[2,0,0,15,54],
-"classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119":[0,8,0,16,21],
-"classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119":[2,0,0,15,21],
-"classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24":[0,8,0,16,73],
-"classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24":[2,0,0,15,73],
-"classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da":[0,8,0,16,27],
-"classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da":[2,0,0,15,27],
-"classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7":[0,8,0,16,72],
-"classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7":[2,0,0,15,72],
-"classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490":[0,8,0,16,44],
-"classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490":[2,0,0,15,44],
-"classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929":[0,8,0,16,20],
-"classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929":[2,0,0,15,20],
-"classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44":[0,8,0,16,29],
-"classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44":[2,0,0,15,29],
-"classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0":[0,8,0,16,38],
-"classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0":[2,0,0,15,38],
-"classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e":[0,8,0,16,43],
-"classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e":[2,0,0,15,43],
-"classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38":[0,8,0,16,23],
-"classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38":[2,0,0,15,23],
-"classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa":[0,8,0,16,18],
-"classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa":[2,0,0,15,18],
-"classgridfire_1_1_graph_engine.html#aeeafeab40a5f4dbfae78bdc87e25e93f":[0,8,0,16,53],
-"classgridfire_1_1_graph_engine.html#aeeafeab40a5f4dbfae78bdc87e25e93f":[2,0,0,15,53],
-"classgridfire_1_1_graph_engine.html#aef8f6bde24d27345067b71084330c7da":[0,8,0,16,31],
-"classgridfire_1_1_graph_engine.html#aef8f6bde24d27345067b71084330c7da":[2,0,0,15,31],
-"classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5":[0,8,0,16,37],
-"classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5":[2,0,0,15,37],
-"classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210":[0,8,0,16,70],
-"classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210":[2,0,0,15,70],
-"classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7":[0,8,0,16,15],
-"classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7":[2,0,0,15,15],
-"classgridfire_1_1_graph_engine.html#af41df9ce979b6410e12642cb093916c9":[0,8,0,16,8],
-"classgridfire_1_1_graph_engine.html#af41df9ce979b6410e12642cb093916c9":[2,0,0,15,8],
-"classgridfire_1_1_graph_engine.html#afad967546b611d9c005268760feb75d5":[0,8,0,16,3],
-"classgridfire_1_1_graph_engine.html#afad967546b611d9c005268760feb75d5":[2,0,0,15,3],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html":[0,8,0,16,0],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html":[2,0,0,15,0],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf":[0,8,0,16,0,0],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf":[2,0,0,15,0,0],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e":[0,8,0,16,0,4],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e":[2,0,0,15,0,4],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d":[0,8,0,16,0,5],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d":[2,0,0,15,0,5],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4":[0,8,0,16,0,3],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4":[2,0,0,15,0,3],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a98ed8b450f7868f55e8362a848a4710d":[0,8,0,16,0,6],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a98ed8b450f7868f55e8362a848a4710d":[2,0,0,15,0,6],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0":[0,8,0,16,0,2],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0":[2,0,0,15,0,2],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4":[0,8,0,16,0,1],
-"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4":[2,0,0,15,0,1],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html":[0,8,0,17],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html":[2,0,0,16],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93":[0,8,0,17,43],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93":[2,0,0,16,43],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235":[0,8,0,17,33],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235":[2,0,0,16,33],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f":[0,8,0,17,4],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f":[2,0,0,16,4],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f":[0,8,0,17,35],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f":[2,0,0,16,35],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc":[0,8,0,17,11],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc":[2,0,0,16,11],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6":[0,8,0,17,49],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6":[2,0,0,16,49],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888":[0,8,0,17,17],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888":[2,0,0,16,17],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1":[0,8,0,17,16],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1":[2,0,0,16,16],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681":[0,8,0,17,3],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681":[2,0,0,16,3],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a38b4f0373c3bd81503889650c0bb69bb":[0,8,0,17,46],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a38b4f0373c3bd81503889650c0bb69bb":[2,0,0,16,46],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c5fcb8e3396d74359fd601554c9ffa9":[0,8,0,17,36],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c5fcb8e3396d74359fd601554c9ffa9":[2,0,0,16,36],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e":[0,8,0,17,18],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e":[2,0,0,16,18],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb":[0,8,0,17,39],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb":[2,0,0,16,39],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8":[0,8,0,17,41],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8":[2,0,0,16,41],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d":[0,8,0,17,12],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d":[2,0,0,16,12],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a510b920dea726aef859ac1f6d051807e":[0,8,0,17,26],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a510b920dea726aef859ac1f6d051807e":[2,0,0,16,26],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a53862719dd73f98bc69eecde090cf655":[0,8,0,17,42],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a53862719dd73f98bc69eecde090cf655":[2,0,0,16,42],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a54ca8004fbd8d6d3ea6f67efeb5dbc8d":[0,8,0,17,27],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a54ca8004fbd8d6d3ea6f67efeb5dbc8d":[2,0,0,16,27],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a560612347bbd5b7b380e990624d01105":[0,8,0,17,25],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a560612347bbd5b7b380e990624d01105":[2,0,0,16,25],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8":[0,8,0,17,40],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8":[2,0,0,16,40],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80":[0,8,0,17,21],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80":[2,0,0,16,21],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8":[0,8,0,17,37],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8":[2,0,0,16,37],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e":[0,8,0,17,48],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e":[2,0,0,16,48],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb":[0,8,0,17,9]
+"classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f":[3,0,0,11,11],
+"classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f":[1,0,0,12,16],
+"classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f":[3,0,0,11,16],
+"classgridfire_1_1_engine.html":[1,0,0,13],
+"classgridfire_1_1_engine.html":[3,0,0,12],
+"classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3":[1,0,0,13,2],
+"classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3":[3,0,0,12,2],
+"classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037":[1,0,0,13,0],
+"classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037":[3,0,0,12,0],
+"classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb":[1,0,0,13,1],
+"classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb":[3,0,0,12,1],
+"classgridfire_1_1_engine_view.html":[1,0,0,14],
+"classgridfire_1_1_engine_view.html":[3,0,0,13],
+"classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74":[1,0,0,14,0],
+"classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74":[3,0,0,13,0],
+"classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6":[1,0,0,14,1],
+"classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6":[3,0,0,13,1],
+"classgridfire_1_1_file_defined_engine_view.html":[1,0,0,15],
+"classgridfire_1_1_file_defined_engine_view.html":[3,0,0,14],
+"classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500":[1,0,0,15,8],
+"classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500":[3,0,0,14,8],
+"classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b":[1,0,0,15,6],
+"classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b":[3,0,0,14,6],
+"classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187":[1,0,0,15,0],
+"classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187":[3,0,0,14,0],
+"classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362":[1,0,0,15,5],
+"classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362":[3,0,0,14,5],
+"classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd":[1,0,0,15,2],
+"classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd":[3,0,0,14,2],
+"classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432":[1,0,0,15,7],
+"classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432":[3,0,0,14,7],
+"classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08":[1,0,0,15,1],
+"classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08":[3,0,0,14,1],
+"classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718":[1,0,0,15,3],
+"classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718":[3,0,0,14,3],
+"classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f":[1,0,0,15,4],
+"classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f":[3,0,0,14,4],
+"classgridfire_1_1_graph_engine.html":[1,0,0,16],
+"classgridfire_1_1_graph_engine.html":[3,0,0,15],
+"classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f":[1,0,0,16,36],
+"classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f":[3,0,0,15,36],
+"classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755":[1,0,0,16,14],
+"classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755":[3,0,0,15,14],
+"classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28":[1,0,0,16,13],
+"classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28":[3,0,0,15,13],
+"classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767":[1,0,0,16,28],
+"classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767":[3,0,0,15,28],
+"classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e":[1,0,0,16,56],
+"classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e":[3,0,0,15,56],
+"classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4":[1,0,0,16,24],
+"classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4":[3,0,0,15,24],
+"classgridfire_1_1_graph_engine.html#a17774cd9ffcf1ba94019df766a0984a0":[1,0,0,16,12],
+"classgridfire_1_1_graph_engine.html#a17774cd9ffcf1ba94019df766a0984a0":[3,0,0,15,12],
+"classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de":[1,0,0,16,73],
+"classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de":[3,0,0,15,73],
+"classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06":[1,0,0,16,58],
+"classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06":[3,0,0,15,58],
+"classgridfire_1_1_graph_engine.html#a1e7e851dfa21d41c2dc533ba56fc4c7b":[1,0,0,16,5],
+"classgridfire_1_1_graph_engine.html#a1e7e851dfa21d41c2dc533ba56fc4c7b":[3,0,0,15,5],
+"classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891":[1,0,0,16,59],
+"classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891":[3,0,0,15,59],
+"classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567":[1,0,0,16,40],
+"classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567":[3,0,0,15,40],
+"classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f":[1,0,0,16,39],
+"classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f":[3,0,0,15,39],
+"classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746":[1,0,0,16,17],
+"classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746":[3,0,0,15,17],
+"classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876":[1,0,0,16,68],
+"classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876":[3,0,0,15,68],
+"classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910":[1,0,0,16,60],
+"classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910":[3,0,0,15,60],
+"classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c":[1,0,0,16,25],
+"classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c":[3,0,0,15,25],
+"classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827":[1,0,0,16,63],
+"classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827":[3,0,0,15,63],
+"classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc":[1,0,0,16,74],
+"classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc":[3,0,0,15,74],
+"classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e":[1,0,0,16,64],
+"classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e":[3,0,0,15,64],
+"classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0":[1,0,0,16,47],
+"classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0":[3,0,0,15,47],
+"classgridfire_1_1_graph_engine.html#a39d9838ed40bea71ee6c552bb5969026":[1,0,0,16,4],
+"classgridfire_1_1_graph_engine.html#a39d9838ed40bea71ee6c552bb5969026":[3,0,0,15,4],
+"classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18":[1,0,0,16,55],
+"classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18":[3,0,0,15,55],
+"classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197":[1,0,0,16,50],
+"classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197":[3,0,0,15,50],
+"classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391":[1,0,0,16,41],
+"classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391":[3,0,0,15,41],
+"classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53":[1,0,0,16,61],
+"classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53":[3,0,0,15,61],
+"classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80":[1,0,0,16,70],
+"classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80":[3,0,0,15,70],
+"classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6":[1,0,0,16,52],
+"classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6":[3,0,0,15,52],
+"classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3":[1,0,0,16,65],
+"classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3":[3,0,0,15,65],
+"classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3":[1,0,0,16,66],
+"classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3":[3,0,0,15,66],
+"classgridfire_1_1_graph_engine.html#a5e96b5a0b34c8932f0e14eabda57f1a4":[1,0,0,16,11],
+"classgridfire_1_1_graph_engine.html#a5e96b5a0b34c8932f0e14eabda57f1a4":[3,0,0,15,11],
+"classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581":[1,0,0,16,33],
+"classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581":[3,0,0,15,33],
+"classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a":[1,0,0,16,30],
+"classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a":[3,0,0,15,30],
+"classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152":[1,0,0,16,34],
+"classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152":[3,0,0,15,34],
+"classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1":[1,0,0,16,48],
+"classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1":[3,0,0,15,48],
+"classgridfire_1_1_graph_engine.html#a71a3d1181b90c3becdc5d9a3da05b9c9":[1,0,0,16,6],
+"classgridfire_1_1_graph_engine.html#a71a3d1181b90c3becdc5d9a3da05b9c9":[3,0,0,15,6],
+"classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01":[1,0,0,16,57],
+"classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01":[3,0,0,15,57],
+"classgridfire_1_1_graph_engine.html#a8110e687844f921438bb517e1d8ce62f":[1,0,0,16,49],
+"classgridfire_1_1_graph_engine.html#a8110e687844f921438bb517e1d8ce62f":[3,0,0,15,49],
+"classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6":[1,0,0,16,54],
+"classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6":[3,0,0,15,54],
+"classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95":[1,0,0,16,19],
+"classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95":[3,0,0,15,19],
+"classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9":[1,0,0,16,26],
+"classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9":[3,0,0,15,26],
+"classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5":[1,0,0,16,46],
+"classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5":[3,0,0,15,46],
+"classgridfire_1_1_graph_engine.html#a914f6abc61805cddaebcb8f3cf470dda":[1,0,0,16,32],
+"classgridfire_1_1_graph_engine.html#a914f6abc61805cddaebcb8f3cf470dda":[3,0,0,15,32],
+"classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f":[1,0,0,16,10],
+"classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f":[3,0,0,15,10],
+"classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd":[1,0,0,16,42],
+"classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd":[3,0,0,15,42],
+"classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc":[1,0,0,16,62],
+"classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc":[3,0,0,15,62],
+"classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889":[1,0,0,16,45],
+"classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889":[3,0,0,15,45],
+"classgridfire_1_1_graph_engine.html#a9687eef88c97eeb7f8680acb230f8ac1":[1,0,0,16,22],
+"classgridfire_1_1_graph_engine.html#a9687eef88c97eeb7f8680acb230f8ac1":[3,0,0,15,22],
+"classgridfire_1_1_graph_engine.html#a97f98706b51fbe0d167ed81ffe58c438":[1,0,0,16,9],
+"classgridfire_1_1_graph_engine.html#a97f98706b51fbe0d167ed81ffe58c438":[3,0,0,15,9],
+"classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b":[1,0,0,16,35],
+"classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b":[3,0,0,15,35],
+"classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081":[1,0,0,16,16],
+"classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081":[3,0,0,15,16],
+"classgridfire_1_1_graph_engine.html#aaf4d54e4b774ab8ec8eabec006579d31":[1,0,0,16,7],
+"classgridfire_1_1_graph_engine.html#aaf4d54e4b774ab8ec8eabec006579d31":[3,0,0,15,7],
+"classgridfire_1_1_graph_engine.html#acb7c4f5108b0efeae48ad15598e808c3":[1,0,0,16,67],
+"classgridfire_1_1_graph_engine.html#acb7c4f5108b0efeae48ad15598e808c3":[3,0,0,15,67],
+"classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f":[1,0,0,16,51],
+"classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f":[3,0,0,15,51],
+"classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be":[1,0,0,16,53],
+"classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be":[3,0,0,15,53],
+"classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119":[1,0,0,16,21],
+"classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119":[3,0,0,15,21],
+"classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24":[1,0,0,16,72],
+"classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24":[3,0,0,15,72],
+"classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da":[1,0,0,16,27],
+"classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da":[3,0,0,15,27],
+"classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7":[1,0,0,16,71],
+"classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7":[3,0,0,15,71],
+"classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490":[1,0,0,16,44],
+"classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490":[3,0,0,15,44],
+"classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929":[1,0,0,16,20],
+"classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929":[3,0,0,15,20],
+"classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44":[1,0,0,16,29],
+"classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44":[3,0,0,15,29],
+"classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0":[1,0,0,16,38],
+"classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0":[3,0,0,15,38],
+"classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e":[1,0,0,16,43],
+"classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e":[3,0,0,15,43],
+"classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38":[1,0,0,16,23],
+"classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38":[3,0,0,15,23],
+"classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa":[1,0,0,16,18],
+"classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa":[3,0,0,15,18],
+"classgridfire_1_1_graph_engine.html#aef8f6bde24d27345067b71084330c7da":[1,0,0,16,31],
+"classgridfire_1_1_graph_engine.html#aef8f6bde24d27345067b71084330c7da":[3,0,0,15,31],
+"classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5":[1,0,0,16,37],
+"classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5":[3,0,0,15,37],
+"classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210":[1,0,0,16,69],
+"classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210":[3,0,0,15,69],
+"classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7":[1,0,0,16,15],
+"classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7":[3,0,0,15,15],
+"classgridfire_1_1_graph_engine.html#af41df9ce979b6410e12642cb093916c9":[1,0,0,16,8],
+"classgridfire_1_1_graph_engine.html#af41df9ce979b6410e12642cb093916c9":[3,0,0,15,8],
+"classgridfire_1_1_graph_engine.html#afad967546b611d9c005268760feb75d5":[1,0,0,16,3],
+"classgridfire_1_1_graph_engine.html#afad967546b611d9c005268760feb75d5":[3,0,0,15,3],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html":[1,0,0,16,0],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html":[3,0,0,15,0],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf":[1,0,0,16,0,0],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf":[3,0,0,15,0,0],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e":[1,0,0,16,0,4],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e":[3,0,0,15,0,4],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d":[1,0,0,16,0,5],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d":[3,0,0,15,0,5],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4":[1,0,0,16,0,3],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4":[3,0,0,15,0,3],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a98ed8b450f7868f55e8362a848a4710d":[1,0,0,16,0,6],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a98ed8b450f7868f55e8362a848a4710d":[3,0,0,15,0,6],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0":[1,0,0,16,0,2],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0":[3,0,0,15,0,2],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4":[1,0,0,16,0,1],
+"classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4":[3,0,0,15,0,1],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html":[1,0,0,17],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html":[3,0,0,16],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93":[1,0,0,17,43],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93":[3,0,0,16,43],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235":[1,0,0,17,33],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235":[3,0,0,16,33],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f":[1,0,0,17,4],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f":[3,0,0,16,4],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f":[1,0,0,17,35],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f":[3,0,0,16,35],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc":[1,0,0,17,11],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc":[3,0,0,16,11],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6":[1,0,0,17,49],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6":[3,0,0,16,49],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888":[1,0,0,17,17],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888":[3,0,0,16,17],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1":[1,0,0,17,16],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1":[3,0,0,16,16],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681":[1,0,0,17,3],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681":[3,0,0,16,3],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a38b4f0373c3bd81503889650c0bb69bb":[1,0,0,17,46],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a38b4f0373c3bd81503889650c0bb69bb":[3,0,0,16,46],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c5fcb8e3396d74359fd601554c9ffa9":[1,0,0,17,36],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c5fcb8e3396d74359fd601554c9ffa9":[3,0,0,16,36],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e":[1,0,0,17,18],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e":[3,0,0,16,18],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb":[1,0,0,17,39],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb":[3,0,0,16,39],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8":[1,0,0,17,41],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8":[3,0,0,16,41],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d":[1,0,0,17,12],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d":[3,0,0,16,12],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a510b920dea726aef859ac1f6d051807e":[1,0,0,17,26],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a510b920dea726aef859ac1f6d051807e":[3,0,0,16,26],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a53862719dd73f98bc69eecde090cf655":[1,0,0,17,42],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a53862719dd73f98bc69eecde090cf655":[3,0,0,16,42],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a54ca8004fbd8d6d3ea6f67efeb5dbc8d":[1,0,0,17,27],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a54ca8004fbd8d6d3ea6f67efeb5dbc8d":[3,0,0,16,27],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a560612347bbd5b7b380e990624d01105":[1,0,0,17,25],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a560612347bbd5b7b380e990624d01105":[3,0,0,16,25],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8":[1,0,0,17,40],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8":[3,0,0,16,40],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80":[1,0,0,17,21],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80":[3,0,0,16,21],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8":[1,0,0,17,37],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8":[3,0,0,16,37],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e":[1,0,0,17,48],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e":[3,0,0,16,48],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb":[1,0,0,17,9],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb":[3,0,0,16,9],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044":[1,0,0,17,8]
};
diff --git a/docs/html/navtreeindex2.js b/docs/html/navtreeindex2.js
index 3028458f..e5b6a447 100644
--- a/docs/html/navtreeindex2.js
+++ b/docs/html/navtreeindex2.js
@@ -1,253 +1,253 @@
var NAVTREEINDEX2 =
{
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb":[2,0,0,16,9],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044":[0,8,0,17,8],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044":[2,0,0,16,8],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82":[0,8,0,17,22],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82":[2,0,0,16,22],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c":[0,8,0,17,32],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c":[2,0,0,16,32],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a":[0,8,0,17,47],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a":[2,0,0,16,47],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a91d32b7197fcb27ee697d5bfde960f3f":[0,8,0,17,24],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a91d32b7197fcb27ee697d5bfde960f3f":[2,0,0,16,24],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7":[0,8,0,17,31],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7":[2,0,0,16,31],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa38c367ef3c74d012ccd10521cd5a727":[0,8,0,17,23],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa38c367ef3c74d012ccd10521cd5a727":[2,0,0,16,23],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa55ed182301d216264daae3e6dfd8917":[0,8,0,17,38],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa55ed182301d216264daae3e6dfd8917":[2,0,0,16,38],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a":[0,8,0,17,44],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a":[2,0,0,16,44],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0":[0,8,0,17,29],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0":[2,0,0,16,29],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aae0865e361dfeb23984d70409fdd9f39":[0,8,0,17,6],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aae0865e361dfeb23984d70409fdd9f39":[2,0,0,16,6],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a":[0,8,0,17,15],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a":[2,0,0,16,15],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ac206840057bac65b7f7738e6dfd1047a":[0,8,0,17,10],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ac206840057bac65b7f7738e6dfd1047a":[2,0,0,16,10],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ac961484383e86d9712a424728e068633":[0,8,0,17,19],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ac961484383e86d9712a424728e068633":[2,0,0,16,19],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#acb5fa7f03cd89b8c1b6b9ffdf3abb12e":[0,8,0,17,34],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#acb5fa7f03cd89b8c1b6b9ffdf3abb12e":[2,0,0,16,34],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#acdf5ad8765290ea2b78170235aea391d":[0,8,0,17,14],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#acdf5ad8765290ea2b78170235aea391d":[2,0,0,16,14],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18":[0,8,0,17,13],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18":[2,0,0,16,13],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ad4d29ee55f89384807616d1068797067":[0,8,0,17,30],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ad4d29ee55f89384807616d1068797067":[2,0,0,16,30],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ad751f2c1306895ee74a61f2071ca96eb":[0,8,0,17,20],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ad751f2c1306895ee74a61f2071ca96eb":[2,0,0,16,20],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ae3875c61dc916c0982ed122c2e272d94":[0,8,0,17,7],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ae3875c61dc916c0982ed122c2e272d94":[2,0,0,16,7],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46":[0,8,0,17,28],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46":[2,0,0,16,28],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f":[0,8,0,17,45],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f":[2,0,0,16,45],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#af13e764c118a6cc51847384e9c70e05b":[0,8,0,17,5],
-"classgridfire_1_1_multiscale_partitioning_engine_view.html#af13e764c118a6cc51847384e9c70e05b":[2,0,0,16,5],
-"classgridfire_1_1_network.html":[0,8,0,20],
-"classgridfire_1_1_network.html":[2,0,0,19],
-"classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16":[0,8,0,20,11],
-"classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16":[2,0,0,19,11],
-"classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55":[0,8,0,20,0],
-"classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55":[2,0,0,19,0],
-"classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118":[0,8,0,20,3],
-"classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118":[2,0,0,19,3],
-"classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18":[0,8,0,20,9],
-"classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18":[2,0,0,19,9],
-"classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4":[0,8,0,20,5],
-"classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4":[2,0,0,19,5],
-"classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe":[0,8,0,20,6],
-"classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe":[2,0,0,19,6],
-"classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5":[0,8,0,20,10],
-"classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5":[2,0,0,19,10],
-"classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09":[0,8,0,20,7],
-"classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09":[2,0,0,19,7],
-"classgridfire_1_1_network.html#ab8d83289b62dda9b4e02f25311f85b79":[0,8,0,20,1],
-"classgridfire_1_1_network.html#ab8d83289b62dda9b4e02f25311f85b79":[2,0,0,19,1],
-"classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410":[0,8,0,20,8],
-"classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410":[2,0,0,19,8],
-"classgridfire_1_1_network.html#ae93ad65deba79def4b77d420e7affa0b":[0,8,0,20,4],
-"classgridfire_1_1_network.html#ae93ad65deba79def4b77d420e7affa0b":[2,0,0,19,4],
-"classgridfire_1_1_network.html#aefe364ae5af783e19e7b93bfd475566e":[0,8,0,20,12],
-"classgridfire_1_1_network.html#aefe364ae5af783e19e7b93bfd475566e":[2,0,0,19,12],
-"classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c":[0,8,0,20,2],
-"classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c":[2,0,0,19,2],
-"classgridfire_1_1_network_priming_engine_view.html":[0,8,0,21],
-"classgridfire_1_1_network_priming_engine_view.html":[2,0,0,20],
-"classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d":[0,8,0,21,3],
-"classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d":[2,0,0,20,3],
-"classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f":[0,8,0,21,2],
-"classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f":[2,0,0,20,2],
-"classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6":[0,8,0,21,1],
-"classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6":[2,0,0,20,1],
-"classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177":[0,8,0,21,0],
-"classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177":[2,0,0,20,0],
-"classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5":[0,8,0,21,4],
-"classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5":[2,0,0,20,4],
-"classgridfire_1_1_reaction.html":[0,8,0,25],
-"classgridfire_1_1_reaction.html":[2,0,0,24],
-"classgridfire_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6":[0,8,0,25,38],
-"classgridfire_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6":[2,0,0,24,38],
-"classgridfire_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c":[0,8,0,25,19],
-"classgridfire_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c":[2,0,0,24,19],
-"classgridfire_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2":[0,8,0,25,9],
-"classgridfire_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2":[2,0,0,24,9],
-"classgridfire_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905":[0,8,0,25,13],
-"classgridfire_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905":[2,0,0,24,13],
-"classgridfire_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9":[0,8,0,25,37],
-"classgridfire_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9":[2,0,0,24,37],
-"classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b":[0,8,0,25,24],
-"classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b":[2,0,0,24,24],
-"classgridfire_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b":[0,8,0,25,29],
-"classgridfire_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b":[2,0,0,24,29],
-"classgridfire_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97":[0,8,0,25,15],
-"classgridfire_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97":[2,0,0,24,15],
-"classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8":[0,8,0,25,28],
-"classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8":[2,0,0,24,28],
-"classgridfire_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51":[0,8,0,25,16],
-"classgridfire_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51":[2,0,0,24,16],
-"classgridfire_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061":[0,8,0,25,3],
-"classgridfire_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061":[2,0,0,24,3],
-"classgridfire_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0":[0,8,0,25,25],
-"classgridfire_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0":[2,0,0,24,25],
-"classgridfire_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e":[0,8,0,25,33],
-"classgridfire_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e":[2,0,0,24,33],
-"classgridfire_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b":[0,8,0,25,34],
-"classgridfire_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b":[2,0,0,24,34],
-"classgridfire_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b":[0,8,0,25,30],
-"classgridfire_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b":[2,0,0,24,30],
-"classgridfire_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629":[0,8,0,25,7],
-"classgridfire_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629":[2,0,0,24,7],
-"classgridfire_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248":[0,8,0,25,32],
-"classgridfire_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248":[2,0,0,24,32],
-"classgridfire_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af":[0,8,0,25,6],
-"classgridfire_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af":[2,0,0,24,6],
-"classgridfire_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02":[0,8,0,25,20],
-"classgridfire_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02":[2,0,0,24,20],
-"classgridfire_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4":[0,8,0,25,31],
-"classgridfire_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4":[2,0,0,24,31],
-"classgridfire_1_1_reaction.html#a735192a42f72cd68f289493753e1a616":[0,8,0,25,4],
-"classgridfire_1_1_reaction.html#a735192a42f72cd68f289493753e1a616":[2,0,0,24,4],
-"classgridfire_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97":[0,8,0,25,18],
-"classgridfire_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97":[2,0,0,24,18],
-"classgridfire_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224":[0,8,0,25,2],
-"classgridfire_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224":[2,0,0,24,2],
-"classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c":[0,8,0,25,1],
-"classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c":[2,0,0,24,1],
-"classgridfire_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923":[0,8,0,25,23],
-"classgridfire_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923":[2,0,0,24,23],
-"classgridfire_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e":[0,8,0,25,22],
-"classgridfire_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e":[2,0,0,24,22],
-"classgridfire_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11":[0,8,0,25,36],
-"classgridfire_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11":[2,0,0,24,36],
-"classgridfire_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5":[0,8,0,25,11],
-"classgridfire_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5":[2,0,0,24,11],
-"classgridfire_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72":[0,8,0,25,35],
-"classgridfire_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72":[2,0,0,24,35],
-"classgridfire_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba":[0,8,0,25,14],
-"classgridfire_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba":[2,0,0,24,14],
-"classgridfire_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac":[0,8,0,25,27],
-"classgridfire_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac":[2,0,0,24,27],
-"classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a":[0,8,0,25,0],
-"classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a":[2,0,0,24,0],
-"classgridfire_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b":[0,8,0,25,8],
-"classgridfire_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b":[2,0,0,24,8],
-"classgridfire_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45":[0,8,0,25,10],
-"classgridfire_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45":[2,0,0,24,10],
-"classgridfire_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8":[0,8,0,25,21],
-"classgridfire_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8":[2,0,0,24,21],
-"classgridfire_1_1_reaction.html#ac426457cf0a54a15b206549422083bac":[0,8,0,25,17],
-"classgridfire_1_1_reaction.html#ac426457cf0a54a15b206549422083bac":[2,0,0,24,17],
-"classgridfire_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3":[0,8,0,25,26],
-"classgridfire_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3":[2,0,0,24,26],
-"classgridfire_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec":[0,8,0,25,5],
-"classgridfire_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec":[2,0,0,24,5],
-"classgridfire_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5":[0,8,0,25,12],
-"classgridfire_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5":[2,0,0,24,12],
-"classgridfire_1_1approx8_1_1_approx8_network.html":[0,8,0,0,1],
-"classgridfire_1_1approx8_1_1_approx8_network.html":[2,0,0,0,1],
-"classgridfire_1_1approx8_1_1_approx8_network.html#a56426da6f1af7eb8a6d1cc70bc8e742a":[0,8,0,0,1,1],
-"classgridfire_1_1approx8_1_1_approx8_network.html#a56426da6f1af7eb8a6d1cc70bc8e742a":[2,0,0,0,1,1],
-"classgridfire_1_1approx8_1_1_approx8_network.html#a5b17b2831389829533385900ce19a37a":[0,8,0,0,1,3],
-"classgridfire_1_1approx8_1_1_approx8_network.html#a5b17b2831389829533385900ce19a37a":[2,0,0,0,1,3],
-"classgridfire_1_1approx8_1_1_approx8_network.html#a65066078081c544be4e56e25eb407c8b":[0,8,0,0,1,0],
-"classgridfire_1_1approx8_1_1_approx8_network.html#a65066078081c544be4e56e25eb407c8b":[2,0,0,0,1,0],
-"classgridfire_1_1approx8_1_1_approx8_network.html#a697cb49bebc8d0659eb791500c451c67":[0,8,0,0,1,6],
-"classgridfire_1_1approx8_1_1_approx8_network.html#a697cb49bebc8d0659eb791500c451c67":[2,0,0,0,1,6],
-"classgridfire_1_1approx8_1_1_approx8_network.html#a6ed8022834e9541b3e547dd867648b0f":[0,8,0,0,1,5],
-"classgridfire_1_1approx8_1_1_approx8_network.html#a6ed8022834e9541b3e547dd867648b0f":[2,0,0,0,1,5],
-"classgridfire_1_1approx8_1_1_approx8_network.html#a6fadf388f07c160f1887a3cb72eaa869":[0,8,0,0,1,7],
-"classgridfire_1_1approx8_1_1_approx8_network.html#a6fadf388f07c160f1887a3cb72eaa869":[2,0,0,0,1,7],
-"classgridfire_1_1approx8_1_1_approx8_network.html#a888734a3cdde4259e921e2efece411ee":[0,8,0,0,1,2],
-"classgridfire_1_1approx8_1_1_approx8_network.html#a888734a3cdde4259e921e2efece411ee":[2,0,0,0,1,2],
-"classgridfire_1_1approx8_1_1_approx8_network.html#abf9f13ff532917ddac4a7d987698836d":[0,8,0,0,1,8],
-"classgridfire_1_1approx8_1_1_approx8_network.html#abf9f13ff532917ddac4a7d987698836d":[2,0,0,0,1,8],
-"classgridfire_1_1approx8_1_1_approx8_network.html#aefed972081514c29cdaaa1efd857ad8d":[0,8,0,0,1,4],
-"classgridfire_1_1approx8_1_1_approx8_network.html#aefed972081514c29cdaaa1efd857ad8d":[2,0,0,0,1,4],
-"classgridfire_1_1exceptions_1_1_engine_error.html":[0,8,0,1,0],
-"classgridfire_1_1exceptions_1_1_engine_error.html":[2,0,0,1,0],
-"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html":[0,8,0,1,1],
-"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html":[2,0,0,1,1],
-"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a77c9a660a2748c2e3a1c7e94edad1cf0":[0,8,0,1,1,2],
-"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a77c9a660a2748c2e3a1c7e94edad1cf0":[2,0,0,1,1,2],
-"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a9b9e8752798876d34a444f61fc2f509a":[0,8,0,1,1,0],
-"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a9b9e8752798876d34a444f61fc2f509a":[2,0,0,1,1,0],
-"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#afe87ef508f5b20ca99ec70510747caff":[0,8,0,1,1,1],
-"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#afe87ef508f5b20ca99ec70510747caff":[2,0,0,1,1,1],
-"classgridfire_1_1exceptions_1_1_network_resized_error.html":[0,8,0,1,2],
-"classgridfire_1_1exceptions_1_1_network_resized_error.html":[2,0,0,1,2],
-"classgridfire_1_1exceptions_1_1_network_resized_error.html#a581527fc03fdd84a8309c147259ec09d":[0,8,0,1,2,2],
-"classgridfire_1_1exceptions_1_1_network_resized_error.html#a581527fc03fdd84a8309c147259ec09d":[2,0,0,1,2,2],
-"classgridfire_1_1exceptions_1_1_network_resized_error.html#a80c0adb088e8083309591d24051b056b":[0,8,0,1,2,0],
-"classgridfire_1_1exceptions_1_1_network_resized_error.html#a80c0adb088e8083309591d24051b056b":[2,0,0,1,2,0],
-"classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1":[0,8,0,1,2,1],
-"classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1":[2,0,0,1,2,1],
-"classgridfire_1_1exceptions_1_1_stale_engine_error.html":[0,8,0,1,3],
-"classgridfire_1_1exceptions_1_1_stale_engine_error.html":[2,0,0,1,3],
-"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4":[0,8,0,1,3,1],
-"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4":[2,0,0,1,3,1],
-"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb":[0,8,0,1,3,2],
-"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb":[2,0,0,1,3,2],
-"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50":[0,8,0,1,3,0],
-"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50":[2,0,0,1,3,0],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html":[0,8,0,1,4],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html":[2,0,0,1,4],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5":[0,8,0,1,4,5],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5":[2,0,0,1,4,5],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408":[0,8,0,1,4,8],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408":[2,0,0,1,4,8],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9":[0,8,0,1,4,7],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9":[2,0,0,1,4,7],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea":[0,8,0,1,4,4],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea":[2,0,0,1,4,4],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c":[0,8,0,1,4,6],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c":[2,0,0,1,4,6],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a7f9fa2e34da3772714723ef7d5083be5":[0,8,0,1,4,10],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a7f9fa2e34da3772714723ef7d5083be5":[2,0,0,1,4,10],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aac4899d001338688def2b809b55bb2ba":[0,8,0,1,4,9],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aac4899d001338688def2b809b55bb2ba":[2,0,0,1,4,9],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc":[0,8,0,1,4,2],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc":[2,0,0,1,4,2],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf":[0,8,0,1,4,3],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf":[2,0,0,1,4,3],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d":[0,8,0,1,4,1],
-"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d":[2,0,0,1,4,1],
-"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html":[0,8,0,1,5],
-"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html":[2,0,0,1,5],
-"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69":[0,8,0,1,5,1],
-"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69":[2,0,0,1,5,1],
-"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#acb3183c3dea755a8a26b00d638183c30":[0,8,0,1,5,0],
-"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#acb3183c3dea755a8a26b00d638183c30":[2,0,0,1,5,0],
-"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047":[0,8,0,1,5,2],
-"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047":[2,0,0,1,5,2],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html":[0,8,0,3,0],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html":[2,0,0,3,0],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329":[0,8,0,3,0,3],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329":[2,0,0,3,0,3],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055":[0,8,0,3,0,1],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055":[2,0,0,3,0,1],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099":[0,8,0,3,0,5]
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044":[3,0,0,16,8],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82":[1,0,0,17,22],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82":[3,0,0,16,22],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c":[1,0,0,17,32],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c":[3,0,0,16,32],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a":[1,0,0,17,47],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a":[3,0,0,16,47],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a91d32b7197fcb27ee697d5bfde960f3f":[1,0,0,17,24],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a91d32b7197fcb27ee697d5bfde960f3f":[3,0,0,16,24],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7":[1,0,0,17,31],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7":[3,0,0,16,31],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa38c367ef3c74d012ccd10521cd5a727":[1,0,0,17,23],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa38c367ef3c74d012ccd10521cd5a727":[3,0,0,16,23],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa55ed182301d216264daae3e6dfd8917":[1,0,0,17,38],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa55ed182301d216264daae3e6dfd8917":[3,0,0,16,38],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a":[1,0,0,17,44],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a":[3,0,0,16,44],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0":[1,0,0,17,29],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0":[3,0,0,16,29],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aae0865e361dfeb23984d70409fdd9f39":[1,0,0,17,6],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aae0865e361dfeb23984d70409fdd9f39":[3,0,0,16,6],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a":[1,0,0,17,15],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a":[3,0,0,16,15],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ac206840057bac65b7f7738e6dfd1047a":[1,0,0,17,10],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ac206840057bac65b7f7738e6dfd1047a":[3,0,0,16,10],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ac961484383e86d9712a424728e068633":[1,0,0,17,19],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ac961484383e86d9712a424728e068633":[3,0,0,16,19],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#acb5fa7f03cd89b8c1b6b9ffdf3abb12e":[1,0,0,17,34],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#acb5fa7f03cd89b8c1b6b9ffdf3abb12e":[3,0,0,16,34],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#acdf5ad8765290ea2b78170235aea391d":[1,0,0,17,14],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#acdf5ad8765290ea2b78170235aea391d":[3,0,0,16,14],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18":[1,0,0,17,13],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18":[3,0,0,16,13],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ad4d29ee55f89384807616d1068797067":[1,0,0,17,30],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ad4d29ee55f89384807616d1068797067":[3,0,0,16,30],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ad751f2c1306895ee74a61f2071ca96eb":[1,0,0,17,20],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ad751f2c1306895ee74a61f2071ca96eb":[3,0,0,16,20],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ae3875c61dc916c0982ed122c2e272d94":[1,0,0,17,7],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ae3875c61dc916c0982ed122c2e272d94":[3,0,0,16,7],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46":[1,0,0,17,28],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46":[3,0,0,16,28],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f":[1,0,0,17,45],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f":[3,0,0,16,45],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#af13e764c118a6cc51847384e9c70e05b":[1,0,0,17,5],
+"classgridfire_1_1_multiscale_partitioning_engine_view.html#af13e764c118a6cc51847384e9c70e05b":[3,0,0,16,5],
+"classgridfire_1_1_network.html":[1,0,0,20],
+"classgridfire_1_1_network.html":[3,0,0,19],
+"classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16":[1,0,0,20,11],
+"classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16":[3,0,0,19,11],
+"classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55":[1,0,0,20,0],
+"classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55":[3,0,0,19,0],
+"classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118":[1,0,0,20,3],
+"classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118":[3,0,0,19,3],
+"classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18":[1,0,0,20,9],
+"classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18":[3,0,0,19,9],
+"classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4":[1,0,0,20,5],
+"classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4":[3,0,0,19,5],
+"classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe":[1,0,0,20,6],
+"classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe":[3,0,0,19,6],
+"classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5":[1,0,0,20,10],
+"classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5":[3,0,0,19,10],
+"classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09":[1,0,0,20,7],
+"classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09":[3,0,0,19,7],
+"classgridfire_1_1_network.html#ab8d83289b62dda9b4e02f25311f85b79":[1,0,0,20,1],
+"classgridfire_1_1_network.html#ab8d83289b62dda9b4e02f25311f85b79":[3,0,0,19,1],
+"classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410":[1,0,0,20,8],
+"classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410":[3,0,0,19,8],
+"classgridfire_1_1_network.html#ae93ad65deba79def4b77d420e7affa0b":[1,0,0,20,4],
+"classgridfire_1_1_network.html#ae93ad65deba79def4b77d420e7affa0b":[3,0,0,19,4],
+"classgridfire_1_1_network.html#aefe364ae5af783e19e7b93bfd475566e":[1,0,0,20,12],
+"classgridfire_1_1_network.html#aefe364ae5af783e19e7b93bfd475566e":[3,0,0,19,12],
+"classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c":[1,0,0,20,2],
+"classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c":[3,0,0,19,2],
+"classgridfire_1_1_network_priming_engine_view.html":[1,0,0,21],
+"classgridfire_1_1_network_priming_engine_view.html":[3,0,0,20],
+"classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d":[1,0,0,21,3],
+"classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d":[3,0,0,20,3],
+"classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f":[1,0,0,21,2],
+"classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f":[3,0,0,20,2],
+"classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6":[1,0,0,21,1],
+"classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6":[3,0,0,20,1],
+"classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177":[1,0,0,21,0],
+"classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177":[3,0,0,20,0],
+"classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5":[1,0,0,21,4],
+"classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5":[3,0,0,20,4],
+"classgridfire_1_1_reaction.html":[1,0,0,25],
+"classgridfire_1_1_reaction.html":[3,0,0,24],
+"classgridfire_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6":[1,0,0,25,38],
+"classgridfire_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6":[3,0,0,24,38],
+"classgridfire_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c":[1,0,0,25,19],
+"classgridfire_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c":[3,0,0,24,19],
+"classgridfire_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2":[1,0,0,25,9],
+"classgridfire_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2":[3,0,0,24,9],
+"classgridfire_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905":[1,0,0,25,13],
+"classgridfire_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905":[3,0,0,24,13],
+"classgridfire_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9":[1,0,0,25,37],
+"classgridfire_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9":[3,0,0,24,37],
+"classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b":[1,0,0,25,24],
+"classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b":[3,0,0,24,24],
+"classgridfire_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b":[1,0,0,25,29],
+"classgridfire_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b":[3,0,0,24,29],
+"classgridfire_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97":[1,0,0,25,15],
+"classgridfire_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97":[3,0,0,24,15],
+"classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8":[1,0,0,25,28],
+"classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8":[3,0,0,24,28],
+"classgridfire_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51":[1,0,0,25,16],
+"classgridfire_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51":[3,0,0,24,16],
+"classgridfire_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061":[1,0,0,25,3],
+"classgridfire_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061":[3,0,0,24,3],
+"classgridfire_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0":[1,0,0,25,25],
+"classgridfire_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0":[3,0,0,24,25],
+"classgridfire_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e":[1,0,0,25,33],
+"classgridfire_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e":[3,0,0,24,33],
+"classgridfire_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b":[1,0,0,25,34],
+"classgridfire_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b":[3,0,0,24,34],
+"classgridfire_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b":[1,0,0,25,30],
+"classgridfire_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b":[3,0,0,24,30],
+"classgridfire_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629":[1,0,0,25,7],
+"classgridfire_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629":[3,0,0,24,7],
+"classgridfire_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248":[1,0,0,25,32],
+"classgridfire_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248":[3,0,0,24,32],
+"classgridfire_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af":[1,0,0,25,6],
+"classgridfire_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af":[3,0,0,24,6],
+"classgridfire_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02":[1,0,0,25,20],
+"classgridfire_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02":[3,0,0,24,20],
+"classgridfire_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4":[1,0,0,25,31],
+"classgridfire_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4":[3,0,0,24,31],
+"classgridfire_1_1_reaction.html#a735192a42f72cd68f289493753e1a616":[1,0,0,25,4],
+"classgridfire_1_1_reaction.html#a735192a42f72cd68f289493753e1a616":[3,0,0,24,4],
+"classgridfire_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97":[1,0,0,25,18],
+"classgridfire_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97":[3,0,0,24,18],
+"classgridfire_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224":[1,0,0,25,2],
+"classgridfire_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224":[3,0,0,24,2],
+"classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c":[1,0,0,25,1],
+"classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c":[3,0,0,24,1],
+"classgridfire_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923":[1,0,0,25,23],
+"classgridfire_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923":[3,0,0,24,23],
+"classgridfire_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e":[1,0,0,25,22],
+"classgridfire_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e":[3,0,0,24,22],
+"classgridfire_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11":[1,0,0,25,36],
+"classgridfire_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11":[3,0,0,24,36],
+"classgridfire_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5":[1,0,0,25,11],
+"classgridfire_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5":[3,0,0,24,11],
+"classgridfire_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72":[1,0,0,25,35],
+"classgridfire_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72":[3,0,0,24,35],
+"classgridfire_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba":[1,0,0,25,14],
+"classgridfire_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba":[3,0,0,24,14],
+"classgridfire_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac":[1,0,0,25,27],
+"classgridfire_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac":[3,0,0,24,27],
+"classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a":[1,0,0,25,0],
+"classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a":[3,0,0,24,0],
+"classgridfire_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b":[1,0,0,25,8],
+"classgridfire_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b":[3,0,0,24,8],
+"classgridfire_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45":[1,0,0,25,10],
+"classgridfire_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45":[3,0,0,24,10],
+"classgridfire_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8":[1,0,0,25,21],
+"classgridfire_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8":[3,0,0,24,21],
+"classgridfire_1_1_reaction.html#ac426457cf0a54a15b206549422083bac":[1,0,0,25,17],
+"classgridfire_1_1_reaction.html#ac426457cf0a54a15b206549422083bac":[3,0,0,24,17],
+"classgridfire_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3":[1,0,0,25,26],
+"classgridfire_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3":[3,0,0,24,26],
+"classgridfire_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec":[1,0,0,25,5],
+"classgridfire_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec":[3,0,0,24,5],
+"classgridfire_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5":[1,0,0,25,12],
+"classgridfire_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5":[3,0,0,24,12],
+"classgridfire_1_1approx8_1_1_approx8_network.html":[1,0,0,0,1],
+"classgridfire_1_1approx8_1_1_approx8_network.html":[3,0,0,0,1],
+"classgridfire_1_1approx8_1_1_approx8_network.html#a56426da6f1af7eb8a6d1cc70bc8e742a":[1,0,0,0,1,1],
+"classgridfire_1_1approx8_1_1_approx8_network.html#a56426da6f1af7eb8a6d1cc70bc8e742a":[3,0,0,0,1,1],
+"classgridfire_1_1approx8_1_1_approx8_network.html#a5b17b2831389829533385900ce19a37a":[1,0,0,0,1,3],
+"classgridfire_1_1approx8_1_1_approx8_network.html#a5b17b2831389829533385900ce19a37a":[3,0,0,0,1,3],
+"classgridfire_1_1approx8_1_1_approx8_network.html#a65066078081c544be4e56e25eb407c8b":[1,0,0,0,1,0],
+"classgridfire_1_1approx8_1_1_approx8_network.html#a65066078081c544be4e56e25eb407c8b":[3,0,0,0,1,0],
+"classgridfire_1_1approx8_1_1_approx8_network.html#a697cb49bebc8d0659eb791500c451c67":[1,0,0,0,1,6],
+"classgridfire_1_1approx8_1_1_approx8_network.html#a697cb49bebc8d0659eb791500c451c67":[3,0,0,0,1,6],
+"classgridfire_1_1approx8_1_1_approx8_network.html#a6ed8022834e9541b3e547dd867648b0f":[1,0,0,0,1,5],
+"classgridfire_1_1approx8_1_1_approx8_network.html#a6ed8022834e9541b3e547dd867648b0f":[3,0,0,0,1,5],
+"classgridfire_1_1approx8_1_1_approx8_network.html#a6fadf388f07c160f1887a3cb72eaa869":[1,0,0,0,1,7],
+"classgridfire_1_1approx8_1_1_approx8_network.html#a6fadf388f07c160f1887a3cb72eaa869":[3,0,0,0,1,7],
+"classgridfire_1_1approx8_1_1_approx8_network.html#a888734a3cdde4259e921e2efece411ee":[1,0,0,0,1,2],
+"classgridfire_1_1approx8_1_1_approx8_network.html#a888734a3cdde4259e921e2efece411ee":[3,0,0,0,1,2],
+"classgridfire_1_1approx8_1_1_approx8_network.html#abf9f13ff532917ddac4a7d987698836d":[1,0,0,0,1,8],
+"classgridfire_1_1approx8_1_1_approx8_network.html#abf9f13ff532917ddac4a7d987698836d":[3,0,0,0,1,8],
+"classgridfire_1_1approx8_1_1_approx8_network.html#aefed972081514c29cdaaa1efd857ad8d":[1,0,0,0,1,4],
+"classgridfire_1_1approx8_1_1_approx8_network.html#aefed972081514c29cdaaa1efd857ad8d":[3,0,0,0,1,4],
+"classgridfire_1_1exceptions_1_1_engine_error.html":[1,0,0,1,0],
+"classgridfire_1_1exceptions_1_1_engine_error.html":[3,0,0,1,0],
+"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html":[1,0,0,1,1],
+"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html":[3,0,0,1,1],
+"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a77c9a660a2748c2e3a1c7e94edad1cf0":[1,0,0,1,1,2],
+"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a77c9a660a2748c2e3a1c7e94edad1cf0":[3,0,0,1,1,2],
+"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a9b9e8752798876d34a444f61fc2f509a":[1,0,0,1,1,0],
+"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a9b9e8752798876d34a444f61fc2f509a":[3,0,0,1,1,0],
+"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#afe87ef508f5b20ca99ec70510747caff":[1,0,0,1,1,1],
+"classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#afe87ef508f5b20ca99ec70510747caff":[3,0,0,1,1,1],
+"classgridfire_1_1exceptions_1_1_network_resized_error.html":[1,0,0,1,2],
+"classgridfire_1_1exceptions_1_1_network_resized_error.html":[3,0,0,1,2],
+"classgridfire_1_1exceptions_1_1_network_resized_error.html#a581527fc03fdd84a8309c147259ec09d":[1,0,0,1,2,2],
+"classgridfire_1_1exceptions_1_1_network_resized_error.html#a581527fc03fdd84a8309c147259ec09d":[3,0,0,1,2,2],
+"classgridfire_1_1exceptions_1_1_network_resized_error.html#a80c0adb088e8083309591d24051b056b":[1,0,0,1,2,0],
+"classgridfire_1_1exceptions_1_1_network_resized_error.html#a80c0adb088e8083309591d24051b056b":[3,0,0,1,2,0],
+"classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1":[1,0,0,1,2,1],
+"classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1":[3,0,0,1,2,1],
+"classgridfire_1_1exceptions_1_1_stale_engine_error.html":[1,0,0,1,3],
+"classgridfire_1_1exceptions_1_1_stale_engine_error.html":[3,0,0,1,3],
+"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4":[1,0,0,1,3,1],
+"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4":[3,0,0,1,3,1],
+"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb":[1,0,0,1,3,2],
+"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb":[3,0,0,1,3,2],
+"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50":[1,0,0,1,3,0],
+"classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50":[3,0,0,1,3,0],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html":[1,0,0,1,4],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html":[3,0,0,1,4],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5":[1,0,0,1,4,5],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5":[3,0,0,1,4,5],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408":[1,0,0,1,4,8],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408":[3,0,0,1,4,8],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9":[1,0,0,1,4,7],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9":[3,0,0,1,4,7],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea":[1,0,0,1,4,4],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea":[3,0,0,1,4,4],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c":[1,0,0,1,4,6],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c":[3,0,0,1,4,6],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a7f9fa2e34da3772714723ef7d5083be5":[1,0,0,1,4,10],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a7f9fa2e34da3772714723ef7d5083be5":[3,0,0,1,4,10],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aac4899d001338688def2b809b55bb2ba":[1,0,0,1,4,9],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aac4899d001338688def2b809b55bb2ba":[3,0,0,1,4,9],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc":[1,0,0,1,4,2],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc":[3,0,0,1,4,2],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf":[1,0,0,1,4,3],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf":[3,0,0,1,4,3],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d":[1,0,0,1,4,1],
+"classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d":[3,0,0,1,4,1],
+"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html":[1,0,0,1,5],
+"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html":[3,0,0,1,5],
+"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69":[1,0,0,1,5,1],
+"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69":[3,0,0,1,5,1],
+"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#acb3183c3dea755a8a26b00d638183c30":[1,0,0,1,5,0],
+"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#acb3183c3dea755a8a26b00d638183c30":[3,0,0,1,5,0],
+"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047":[1,0,0,1,5,2],
+"classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047":[3,0,0,1,5,2],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html":[1,0,0,3,0],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html":[3,0,0,3,0],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329":[1,0,0,3,0,3],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329":[3,0,0,3,0,3],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055":[1,0,0,3,0,1],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055":[3,0,0,3,0,1],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099":[1,0,0,3,0,5],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099":[3,0,0,3,0,5],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937":[1,0,0,3,0,6]
};
diff --git a/docs/html/navtreeindex3.js b/docs/html/navtreeindex3.js
index ed9a5178..1310c11a 100644
--- a/docs/html/navtreeindex3.js
+++ b/docs/html/navtreeindex3.js
@@ -1,253 +1,253 @@
var NAVTREEINDEX3 =
{
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099":[2,0,0,3,0,5],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937":[0,8,0,3,0,6],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937":[2,0,0,3,0,6],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c":[0,8,0,3,0,2],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c":[2,0,0,3,0,2],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d":[0,8,0,3,0,4],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d":[2,0,0,3,0,4],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b":[0,8,0,3,0,0],
-"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b":[2,0,0,3,0,0],
-"classgridfire_1_1io_1_1_network_file_parser.html":[0,8,0,3,1],
-"classgridfire_1_1io_1_1_network_file_parser.html":[2,0,0,3,1],
-"classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf":[0,8,0,3,1,1],
-"classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf":[2,0,0,3,1,1],
-"classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3":[0,8,0,3,1,0],
-"classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3":[2,0,0,3,1,0],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html":[0,8,0,3,2],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html":[2,0,0,3,2],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874":[0,8,0,3,2,4],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874":[2,0,0,3,2,4],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8":[0,8,0,3,2,3],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8":[2,0,0,3,2,3],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de":[0,8,0,3,2,1],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de":[2,0,0,3,2,1],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66":[0,8,0,3,2,5],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66":[2,0,0,3,2,5],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036":[0,8,0,3,2,0],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036":[2,0,0,3,2,0],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993":[0,8,0,3,2,2],
-"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993":[2,0,0,3,2,2],
-"classgridfire_1_1partition_1_1_composite_partition_function.html":[0,8,0,4,1],
-"classgridfire_1_1partition_1_1_composite_partition_function.html":[2,0,0,4,1],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b":[0,8,0,4,1,5],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b":[2,0,0,4,1,5],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88":[0,8,0,4,1,7],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88":[2,0,0,4,1,7],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a":[0,8,0,4,1,2],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a":[2,0,0,4,1,2],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8":[0,8,0,4,1,9],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8":[2,0,0,4,1,9],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b":[0,8,0,4,1,3],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b":[2,0,0,4,1,3],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#ac1bc5bedabef400fab6aceb477dbc6b9":[0,8,0,4,1,1],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#ac1bc5bedabef400fab6aceb477dbc6b9":[2,0,0,4,1,1],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#ac8900afaa5edd24fcb8eaf19e7379183":[0,8,0,4,1,4],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#ac8900afaa5edd24fcb8eaf19e7379183":[2,0,0,4,1,4],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#ad80743933712de627c6a69d06d42ceb5":[0,8,0,4,1,0],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#ad80743933712de627c6a69d06d42ceb5":[2,0,0,4,1,0],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b":[0,8,0,4,1,8],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b":[2,0,0,4,1,8],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c":[0,8,0,4,1,6],
-"classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c":[2,0,0,4,1,6],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html":[0,8,0,4,2],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html":[2,0,0,4,2],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0eff10c7b134d9d4081ad72bbc785c5b":[0,8,0,4,2,3],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0eff10c7b134d9d4081ad72bbc785c5b":[2,0,0,4,2,3],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd":[0,8,0,4,2,5],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd":[2,0,0,4,2,5],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a8afa2aee993eb3ed8d01c887d39b57eb":[0,8,0,4,2,0],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a8afa2aee993eb3ed8d01c887d39b57eb":[2,0,0,4,2,0],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a99c80e2f4ba36e88e08e2abd650a08fb":[0,8,0,4,2,4],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a99c80e2f4ba36e88e08e2abd650a08fb":[2,0,0,4,2,4],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4":[0,8,0,4,2,1],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4":[2,0,0,4,2,1],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5":[0,8,0,4,2,2],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5":[2,0,0,4,2,2],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245":[0,8,0,4,2,7],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245":[2,0,0,4,2,7],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250":[0,8,0,4,2,6],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250":[2,0,0,4,2,6],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b":[0,8,0,4,2,8],
-"classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b":[2,0,0,4,2,8],
-"classgridfire_1_1partition_1_1_partition_function.html":[0,8,0,4,3],
-"classgridfire_1_1partition_1_1_partition_function.html":[2,0,0,4,3],
-"classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817":[0,8,0,4,3,2],
-"classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817":[2,0,0,4,3,2],
-"classgridfire_1_1partition_1_1_partition_function.html#a14009bdaca47f3eddf2c6c023845db5a":[0,8,0,4,3,3],
-"classgridfire_1_1partition_1_1_partition_function.html#a14009bdaca47f3eddf2c6c023845db5a":[2,0,0,4,3,3],
-"classgridfire_1_1partition_1_1_partition_function.html#a197a0663dcfb4ab4be3b0e14b98391db":[0,8,0,4,3,0],
-"classgridfire_1_1partition_1_1_partition_function.html#a197a0663dcfb4ab4be3b0e14b98391db":[2,0,0,4,3,0],
-"classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d":[0,8,0,4,3,1],
-"classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d":[2,0,0,4,3,1],
-"classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5":[0,8,0,4,3,4],
-"classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5":[2,0,0,4,3,4],
-"classgridfire_1_1partition_1_1_partition_function.html#ab0c67985a972707eac0ebc64417dfb97":[0,8,0,4,3,5],
-"classgridfire_1_1partition_1_1_partition_function.html#ab0c67985a972707eac0ebc64417dfb97":[2,0,0,4,3,5],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html":[0,8,0,4,4],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html":[2,0,0,4,4],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a12058e121981294f447e69a467fd84cd":[0,8,0,4,4,8],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a12058e121981294f447e69a467fd84cd":[2,0,0,4,4,8],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3aa478acf12e09b6dd268f744071b2a0":[0,8,0,4,4,12],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3aa478acf12e09b6dd268f744071b2a0":[2,0,0,4,4,12],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3baed110ab1b12e22071dc2d92c55db9":[0,8,0,4,4,9],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3baed110ab1b12e22071dc2d92c55db9":[2,0,0,4,4,9],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a50ce19df4c12e22bbcb61422248a4038":[0,8,0,4,4,14],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a50ce19df4c12e22bbcb61422248a4038":[2,0,0,4,4,14],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6":[0,8,0,4,4,13],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6":[2,0,0,4,4,13],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5":[0,8,0,4,4,11],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5":[2,0,0,4,4,11],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329":[0,8,0,4,4,3],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329":[2,0,0,4,4,3],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71":[0,8,0,4,4,3,0],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71":[2,0,0,4,4,3,0],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735":[0,8,0,4,4,3,2],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735":[2,0,0,4,4,3,2],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329ad8c6323fcc54dfc5319fbd935ae4f75d":[0,8,0,4,4,3,1],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329ad8c6323fcc54dfc5319fbd935ae4f75d":[2,0,0,4,4,3,1],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aaa1e11579b44a88c5f18943cc303c4b4":[0,8,0,4,4,7],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aaa1e11579b44a88c5f18943cc303c4b4":[2,0,0,4,4,7],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec":[0,8,0,4,4,10],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec":[2,0,0,4,4,10],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6":[0,8,0,4,4,5],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6":[2,0,0,4,4,5],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c":[0,8,0,4,4,4],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c":[2,0,0,4,4,4],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681":[0,8,0,4,4,6],
-"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681":[2,0,0,4,4,6],
-"classgridfire_1_1reaction_1_1_logical_reaction.html":[0,8,0,6,0],
-"classgridfire_1_1reaction_1_1_logical_reaction.html":[2,0,0,6,0],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a019b721d83741acdb16036f00739f87c":[0,8,0,6,0,7],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a019b721d83741acdb16036f00739f87c":[2,0,0,6,0,7],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a054994f733b44293b4d79f3a9b207560":[0,8,0,6,0,9],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a054994f733b44293b4d79f3a9b207560":[2,0,0,6,0,9],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a10cbea11653524dae2f7eafb5c22c90f":[0,8,0,6,0,12],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a10cbea11653524dae2f7eafb5c22c90f":[2,0,0,6,0,12],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a14a24cb8ea25a1514134acc51197f1de":[0,8,0,6,0,1],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a14a24cb8ea25a1514134acc51197f1de":[2,0,0,6,0,1],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a1d2fb3b6a6a1860ace98b32447d1dd1b":[0,8,0,6,0,6],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a1d2fb3b6a6a1860ace98b32447d1dd1b":[2,0,0,6,0,6],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a4ae3806e5e1a802b86a6de292d043476":[0,8,0,6,0,2],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a4ae3806e5e1a802b86a6de292d043476":[2,0,0,6,0,2],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a5d410de1053f8028faed1f0d0a6083f5":[0,8,0,6,0,3],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a5d410de1053f8028faed1f0d0a6083f5":[2,0,0,6,0,3],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a6965906ea33ebd0d615811219d9e9537":[0,8,0,6,0,0],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a6965906ea33ebd0d615811219d9e9537":[2,0,0,6,0,0],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a7fe91d24e20ebc76d612f6ad742f476f":[0,8,0,6,0,14],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a7fe91d24e20ebc76d612f6ad742f476f":[2,0,0,6,0,14],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a81f75f0085f8a5a45169f0b7240c809d":[0,8,0,6,0,13],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#a81f75f0085f8a5a45169f0b7240c809d":[2,0,0,6,0,13],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#aa4b8d0d30459f360ff6e29d848e943d5":[0,8,0,6,0,4],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#aa4b8d0d30459f360ff6e29d848e943d5":[2,0,0,6,0,4],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#adad6f4297c1d8ce487eab092b73cdd32":[0,8,0,6,0,5],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#adad6f4297c1d8ce487eab092b73cdd32":[2,0,0,6,0,5],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#add094eda0e71126f8443698d7f3317f4":[0,8,0,6,0,11],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#add094eda0e71126f8443698d7f3317f4":[2,0,0,6,0,11],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#af8d23557326e6c8499fa4919ac0bd972":[0,8,0,6,0,8],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#af8d23557326e6c8499fa4919ac0bd972":[2,0,0,6,0,8],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#afa41050855b842c63db16c94d2e9b897":[0,8,0,6,0,10],
-"classgridfire_1_1reaction_1_1_logical_reaction.html#afa41050855b842c63db16c94d2e9b897":[2,0,0,6,0,10],
-"classgridfire_1_1reaction_1_1_reaction.html":[0,8,0,6,2],
-"classgridfire_1_1reaction_1_1_reaction.html":[2,0,0,6,2],
-"classgridfire_1_1reaction_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6":[0,8,0,6,2,38],
-"classgridfire_1_1reaction_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6":[2,0,0,6,2,38],
-"classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c":[0,8,0,6,2,19],
-"classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c":[2,0,0,6,2,19],
-"classgridfire_1_1reaction_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2":[0,8,0,6,2,9],
-"classgridfire_1_1reaction_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2":[2,0,0,6,2,9],
-"classgridfire_1_1reaction_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905":[0,8,0,6,2,13],
-"classgridfire_1_1reaction_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905":[2,0,0,6,2,13],
-"classgridfire_1_1reaction_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9":[0,8,0,6,2,37],
-"classgridfire_1_1reaction_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9":[2,0,0,6,2,37],
-"classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b":[0,8,0,6,2,24],
-"classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b":[2,0,0,6,2,24],
-"classgridfire_1_1reaction_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b":[0,8,0,6,2,29],
-"classgridfire_1_1reaction_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b":[2,0,0,6,2,29],
-"classgridfire_1_1reaction_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97":[0,8,0,6,2,15],
-"classgridfire_1_1reaction_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97":[2,0,0,6,2,15],
-"classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8":[0,8,0,6,2,28],
-"classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8":[2,0,0,6,2,28],
-"classgridfire_1_1reaction_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51":[0,8,0,6,2,16],
-"classgridfire_1_1reaction_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51":[2,0,0,6,2,16],
-"classgridfire_1_1reaction_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061":[0,8,0,6,2,3],
-"classgridfire_1_1reaction_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061":[2,0,0,6,2,3],
-"classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0":[0,8,0,6,2,25],
-"classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0":[2,0,0,6,2,25],
-"classgridfire_1_1reaction_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e":[0,8,0,6,2,33],
-"classgridfire_1_1reaction_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e":[2,0,0,6,2,33],
-"classgridfire_1_1reaction_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b":[0,8,0,6,2,34],
-"classgridfire_1_1reaction_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b":[2,0,0,6,2,34],
-"classgridfire_1_1reaction_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b":[0,8,0,6,2,30],
-"classgridfire_1_1reaction_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b":[2,0,0,6,2,30],
-"classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629":[0,8,0,6,2,7],
-"classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629":[2,0,0,6,2,7],
-"classgridfire_1_1reaction_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248":[0,8,0,6,2,32],
-"classgridfire_1_1reaction_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248":[2,0,0,6,2,32],
-"classgridfire_1_1reaction_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af":[0,8,0,6,2,6],
-"classgridfire_1_1reaction_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af":[2,0,0,6,2,6],
-"classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02":[0,8,0,6,2,20],
-"classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02":[2,0,0,6,2,20],
-"classgridfire_1_1reaction_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4":[0,8,0,6,2,31],
-"classgridfire_1_1reaction_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4":[2,0,0,6,2,31],
-"classgridfire_1_1reaction_1_1_reaction.html#a735192a42f72cd68f289493753e1a616":[0,8,0,6,2,4],
-"classgridfire_1_1reaction_1_1_reaction.html#a735192a42f72cd68f289493753e1a616":[2,0,0,6,2,4],
-"classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97":[0,8,0,6,2,18],
-"classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97":[2,0,0,6,2,18],
-"classgridfire_1_1reaction_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224":[0,8,0,6,2,2],
-"classgridfire_1_1reaction_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224":[2,0,0,6,2,2],
-"classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c":[0,8,0,6,2,1],
-"classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c":[2,0,0,6,2,1],
-"classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923":[0,8,0,6,2,23],
-"classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923":[2,0,0,6,2,23],
-"classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e":[0,8,0,6,2,22],
-"classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e":[2,0,0,6,2,22],
-"classgridfire_1_1reaction_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11":[0,8,0,6,2,36],
-"classgridfire_1_1reaction_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11":[2,0,0,6,2,36],
-"classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5":[0,8,0,6,2,11],
-"classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5":[2,0,0,6,2,11],
-"classgridfire_1_1reaction_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72":[0,8,0,6,2,35],
-"classgridfire_1_1reaction_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72":[2,0,0,6,2,35],
-"classgridfire_1_1reaction_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba":[0,8,0,6,2,14],
-"classgridfire_1_1reaction_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba":[2,0,0,6,2,14],
-"classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac":[0,8,0,6,2,27],
-"classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac":[2,0,0,6,2,27],
-"classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a":[0,8,0,6,2,0],
-"classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a":[2,0,0,6,2,0],
-"classgridfire_1_1reaction_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b":[0,8,0,6,2,8],
-"classgridfire_1_1reaction_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b":[2,0,0,6,2,8],
-"classgridfire_1_1reaction_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45":[0,8,0,6,2,10],
-"classgridfire_1_1reaction_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45":[2,0,0,6,2,10],
-"classgridfire_1_1reaction_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8":[0,8,0,6,2,21],
-"classgridfire_1_1reaction_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8":[2,0,0,6,2,21],
-"classgridfire_1_1reaction_1_1_reaction.html#ac426457cf0a54a15b206549422083bac":[0,8,0,6,2,17],
-"classgridfire_1_1reaction_1_1_reaction.html#ac426457cf0a54a15b206549422083bac":[2,0,0,6,2,17],
-"classgridfire_1_1reaction_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3":[0,8,0,6,2,26],
-"classgridfire_1_1reaction_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3":[2,0,0,6,2,26],
-"classgridfire_1_1reaction_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec":[0,8,0,6,2,5],
-"classgridfire_1_1reaction_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec":[2,0,0,6,2,5],
-"classgridfire_1_1reaction_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5":[0,8,0,6,2,12],
-"classgridfire_1_1reaction_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5":[2,0,0,6,2,12],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html":[0,8,0,6,3],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html":[2,0,0,6,3],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a05f71d318564d880079fd6c96d59ae21":[0,8,0,6,3,6],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a05f71d318564d880079fd6c96d59ae21":[2,0,0,6,3,6],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a128660f5fbc67054f73811ed2982d24d":[0,8,0,6,3,18],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a128660f5fbc67054f73811ed2982d24d":[2,0,0,6,3,18],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a13e003529a17fa61aafdce3abd2dc773":[0,8,0,6,3,19],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a13e003529a17fa61aafdce3abd2dc773":[2,0,0,6,3,19],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a1596de3439735a45ac344fa85ace6c82":[0,8,0,6,3,14],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a1596de3439735a45ac344fa85ace6c82":[2,0,0,6,3,14],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a272800016c83f259f5c6a92dc797353c":[0,8,0,6,3,15],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a272800016c83f259f5c6a92dc797353c":[2,0,0,6,3,15],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a339dbbf883b6ae20e33d9782d8376bcf":[0,8,0,6,3,3],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a339dbbf883b6ae20e33d9782d8376bcf":[2,0,0,6,3,3],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a3a4c2448865580001fd3c797b9f56979":[0,8,0,6,3,26],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a3a4c2448865580001fd3c797b9f56979":[2,0,0,6,3,26],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a443ec5d7138764b32975232e13071ccf":[0,8,0,6,3,9],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a443ec5d7138764b32975232e13071ccf":[2,0,0,6,3,9],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a47265467dbf2c324ce3e4c85ebbaa6a7":[0,8,0,6,3,23],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a47265467dbf2c324ce3e4c85ebbaa6a7":[2,0,0,6,3,23],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a54c8cd7c34564277fe28eefc623f666e":[0,8,0,6,3,0]
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937":[3,0,0,3,0,6],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c":[1,0,0,3,0,2],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c":[3,0,0,3,0,2],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d":[1,0,0,3,0,4],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d":[3,0,0,3,0,4],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b":[1,0,0,3,0,0],
+"classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b":[3,0,0,3,0,0],
+"classgridfire_1_1io_1_1_network_file_parser.html":[1,0,0,3,1],
+"classgridfire_1_1io_1_1_network_file_parser.html":[3,0,0,3,1],
+"classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf":[1,0,0,3,1,1],
+"classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf":[3,0,0,3,1,1],
+"classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3":[1,0,0,3,1,0],
+"classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3":[3,0,0,3,1,0],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html":[1,0,0,3,2],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html":[3,0,0,3,2],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874":[1,0,0,3,2,4],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874":[3,0,0,3,2,4],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8":[1,0,0,3,2,3],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8":[3,0,0,3,2,3],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de":[1,0,0,3,2,1],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de":[3,0,0,3,2,1],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66":[1,0,0,3,2,5],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66":[3,0,0,3,2,5],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036":[1,0,0,3,2,0],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036":[3,0,0,3,2,0],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993":[1,0,0,3,2,2],
+"classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993":[3,0,0,3,2,2],
+"classgridfire_1_1partition_1_1_composite_partition_function.html":[1,0,0,4,1],
+"classgridfire_1_1partition_1_1_composite_partition_function.html":[3,0,0,4,1],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b":[1,0,0,4,1,5],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b":[3,0,0,4,1,5],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88":[1,0,0,4,1,7],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88":[3,0,0,4,1,7],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a":[1,0,0,4,1,2],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a":[3,0,0,4,1,2],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8":[1,0,0,4,1,9],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8":[3,0,0,4,1,9],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b":[1,0,0,4,1,3],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b":[3,0,0,4,1,3],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#ac1bc5bedabef400fab6aceb477dbc6b9":[1,0,0,4,1,1],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#ac1bc5bedabef400fab6aceb477dbc6b9":[3,0,0,4,1,1],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#ac8900afaa5edd24fcb8eaf19e7379183":[1,0,0,4,1,4],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#ac8900afaa5edd24fcb8eaf19e7379183":[3,0,0,4,1,4],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#ad80743933712de627c6a69d06d42ceb5":[1,0,0,4,1,0],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#ad80743933712de627c6a69d06d42ceb5":[3,0,0,4,1,0],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b":[1,0,0,4,1,8],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b":[3,0,0,4,1,8],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c":[1,0,0,4,1,6],
+"classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c":[3,0,0,4,1,6],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html":[1,0,0,4,2],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html":[3,0,0,4,2],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0eff10c7b134d9d4081ad72bbc785c5b":[1,0,0,4,2,3],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0eff10c7b134d9d4081ad72bbc785c5b":[3,0,0,4,2,3],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd":[1,0,0,4,2,5],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd":[3,0,0,4,2,5],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a8afa2aee993eb3ed8d01c887d39b57eb":[1,0,0,4,2,0],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a8afa2aee993eb3ed8d01c887d39b57eb":[3,0,0,4,2,0],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a99c80e2f4ba36e88e08e2abd650a08fb":[1,0,0,4,2,4],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#a99c80e2f4ba36e88e08e2abd650a08fb":[3,0,0,4,2,4],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4":[1,0,0,4,2,1],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4":[3,0,0,4,2,1],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5":[1,0,0,4,2,2],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5":[3,0,0,4,2,2],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245":[1,0,0,4,2,7],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245":[3,0,0,4,2,7],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250":[1,0,0,4,2,6],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250":[3,0,0,4,2,6],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b":[1,0,0,4,2,8],
+"classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b":[3,0,0,4,2,8],
+"classgridfire_1_1partition_1_1_partition_function.html":[1,0,0,4,3],
+"classgridfire_1_1partition_1_1_partition_function.html":[3,0,0,4,3],
+"classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817":[1,0,0,4,3,2],
+"classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817":[3,0,0,4,3,2],
+"classgridfire_1_1partition_1_1_partition_function.html#a14009bdaca47f3eddf2c6c023845db5a":[1,0,0,4,3,3],
+"classgridfire_1_1partition_1_1_partition_function.html#a14009bdaca47f3eddf2c6c023845db5a":[3,0,0,4,3,3],
+"classgridfire_1_1partition_1_1_partition_function.html#a197a0663dcfb4ab4be3b0e14b98391db":[1,0,0,4,3,0],
+"classgridfire_1_1partition_1_1_partition_function.html#a197a0663dcfb4ab4be3b0e14b98391db":[3,0,0,4,3,0],
+"classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d":[1,0,0,4,3,1],
+"classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d":[3,0,0,4,3,1],
+"classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5":[1,0,0,4,3,4],
+"classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5":[3,0,0,4,3,4],
+"classgridfire_1_1partition_1_1_partition_function.html#ab0c67985a972707eac0ebc64417dfb97":[1,0,0,4,3,5],
+"classgridfire_1_1partition_1_1_partition_function.html#ab0c67985a972707eac0ebc64417dfb97":[3,0,0,4,3,5],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html":[1,0,0,4,4],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html":[3,0,0,4,4],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a12058e121981294f447e69a467fd84cd":[1,0,0,4,4,8],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a12058e121981294f447e69a467fd84cd":[3,0,0,4,4,8],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3aa478acf12e09b6dd268f744071b2a0":[1,0,0,4,4,12],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3aa478acf12e09b6dd268f744071b2a0":[3,0,0,4,4,12],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3baed110ab1b12e22071dc2d92c55db9":[1,0,0,4,4,9],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3baed110ab1b12e22071dc2d92c55db9":[3,0,0,4,4,9],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a50ce19df4c12e22bbcb61422248a4038":[1,0,0,4,4,14],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a50ce19df4c12e22bbcb61422248a4038":[3,0,0,4,4,14],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6":[1,0,0,4,4,13],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6":[3,0,0,4,4,13],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5":[1,0,0,4,4,11],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5":[3,0,0,4,4,11],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329":[1,0,0,4,4,3],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329":[3,0,0,4,4,3],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71":[1,0,0,4,4,3,0],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71":[3,0,0,4,4,3,0],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735":[1,0,0,4,4,3,2],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735":[3,0,0,4,4,3,2],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329ad8c6323fcc54dfc5319fbd935ae4f75d":[1,0,0,4,4,3,1],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329ad8c6323fcc54dfc5319fbd935ae4f75d":[3,0,0,4,4,3,1],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aaa1e11579b44a88c5f18943cc303c4b4":[1,0,0,4,4,7],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aaa1e11579b44a88c5f18943cc303c4b4":[3,0,0,4,4,7],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec":[1,0,0,4,4,10],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec":[3,0,0,4,4,10],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6":[1,0,0,4,4,5],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6":[3,0,0,4,4,5],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c":[1,0,0,4,4,4],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c":[3,0,0,4,4,4],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681":[1,0,0,4,4,6],
+"classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681":[3,0,0,4,4,6],
+"classgridfire_1_1reaction_1_1_logical_reaction.html":[1,0,0,6,0],
+"classgridfire_1_1reaction_1_1_logical_reaction.html":[3,0,0,6,0],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a019b721d83741acdb16036f00739f87c":[1,0,0,6,0,7],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a019b721d83741acdb16036f00739f87c":[3,0,0,6,0,7],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a054994f733b44293b4d79f3a9b207560":[1,0,0,6,0,9],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a054994f733b44293b4d79f3a9b207560":[3,0,0,6,0,9],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a10cbea11653524dae2f7eafb5c22c90f":[1,0,0,6,0,12],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a10cbea11653524dae2f7eafb5c22c90f":[3,0,0,6,0,12],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a14a24cb8ea25a1514134acc51197f1de":[1,0,0,6,0,1],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a14a24cb8ea25a1514134acc51197f1de":[3,0,0,6,0,1],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a1d2fb3b6a6a1860ace98b32447d1dd1b":[1,0,0,6,0,6],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a1d2fb3b6a6a1860ace98b32447d1dd1b":[3,0,0,6,0,6],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a4ae3806e5e1a802b86a6de292d043476":[1,0,0,6,0,2],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a4ae3806e5e1a802b86a6de292d043476":[3,0,0,6,0,2],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a5d410de1053f8028faed1f0d0a6083f5":[1,0,0,6,0,3],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a5d410de1053f8028faed1f0d0a6083f5":[3,0,0,6,0,3],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a6965906ea33ebd0d615811219d9e9537":[1,0,0,6,0,0],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a6965906ea33ebd0d615811219d9e9537":[3,0,0,6,0,0],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a7fe91d24e20ebc76d612f6ad742f476f":[1,0,0,6,0,14],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a7fe91d24e20ebc76d612f6ad742f476f":[3,0,0,6,0,14],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a81f75f0085f8a5a45169f0b7240c809d":[1,0,0,6,0,13],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#a81f75f0085f8a5a45169f0b7240c809d":[3,0,0,6,0,13],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#aa4b8d0d30459f360ff6e29d848e943d5":[1,0,0,6,0,4],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#aa4b8d0d30459f360ff6e29d848e943d5":[3,0,0,6,0,4],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#adad6f4297c1d8ce487eab092b73cdd32":[1,0,0,6,0,5],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#adad6f4297c1d8ce487eab092b73cdd32":[3,0,0,6,0,5],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#add094eda0e71126f8443698d7f3317f4":[1,0,0,6,0,11],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#add094eda0e71126f8443698d7f3317f4":[3,0,0,6,0,11],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#af8d23557326e6c8499fa4919ac0bd972":[1,0,0,6,0,8],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#af8d23557326e6c8499fa4919ac0bd972":[3,0,0,6,0,8],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#afa41050855b842c63db16c94d2e9b897":[1,0,0,6,0,10],
+"classgridfire_1_1reaction_1_1_logical_reaction.html#afa41050855b842c63db16c94d2e9b897":[3,0,0,6,0,10],
+"classgridfire_1_1reaction_1_1_reaction.html":[1,0,0,6,2],
+"classgridfire_1_1reaction_1_1_reaction.html":[3,0,0,6,2],
+"classgridfire_1_1reaction_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6":[1,0,0,6,2,38],
+"classgridfire_1_1reaction_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6":[3,0,0,6,2,38],
+"classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c":[1,0,0,6,2,19],
+"classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c":[3,0,0,6,2,19],
+"classgridfire_1_1reaction_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2":[1,0,0,6,2,9],
+"classgridfire_1_1reaction_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2":[3,0,0,6,2,9],
+"classgridfire_1_1reaction_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905":[1,0,0,6,2,13],
+"classgridfire_1_1reaction_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905":[3,0,0,6,2,13],
+"classgridfire_1_1reaction_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9":[1,0,0,6,2,37],
+"classgridfire_1_1reaction_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9":[3,0,0,6,2,37],
+"classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b":[1,0,0,6,2,24],
+"classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b":[3,0,0,6,2,24],
+"classgridfire_1_1reaction_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b":[1,0,0,6,2,29],
+"classgridfire_1_1reaction_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b":[3,0,0,6,2,29],
+"classgridfire_1_1reaction_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97":[1,0,0,6,2,15],
+"classgridfire_1_1reaction_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97":[3,0,0,6,2,15],
+"classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8":[1,0,0,6,2,28],
+"classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8":[3,0,0,6,2,28],
+"classgridfire_1_1reaction_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51":[1,0,0,6,2,16],
+"classgridfire_1_1reaction_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51":[3,0,0,6,2,16],
+"classgridfire_1_1reaction_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061":[1,0,0,6,2,3],
+"classgridfire_1_1reaction_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061":[3,0,0,6,2,3],
+"classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0":[1,0,0,6,2,25],
+"classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0":[3,0,0,6,2,25],
+"classgridfire_1_1reaction_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e":[1,0,0,6,2,33],
+"classgridfire_1_1reaction_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e":[3,0,0,6,2,33],
+"classgridfire_1_1reaction_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b":[1,0,0,6,2,34],
+"classgridfire_1_1reaction_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b":[3,0,0,6,2,34],
+"classgridfire_1_1reaction_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b":[1,0,0,6,2,30],
+"classgridfire_1_1reaction_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b":[3,0,0,6,2,30],
+"classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629":[1,0,0,6,2,7],
+"classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629":[3,0,0,6,2,7],
+"classgridfire_1_1reaction_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248":[1,0,0,6,2,32],
+"classgridfire_1_1reaction_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248":[3,0,0,6,2,32],
+"classgridfire_1_1reaction_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af":[1,0,0,6,2,6],
+"classgridfire_1_1reaction_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af":[3,0,0,6,2,6],
+"classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02":[1,0,0,6,2,20],
+"classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02":[3,0,0,6,2,20],
+"classgridfire_1_1reaction_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4":[1,0,0,6,2,31],
+"classgridfire_1_1reaction_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4":[3,0,0,6,2,31],
+"classgridfire_1_1reaction_1_1_reaction.html#a735192a42f72cd68f289493753e1a616":[1,0,0,6,2,4],
+"classgridfire_1_1reaction_1_1_reaction.html#a735192a42f72cd68f289493753e1a616":[3,0,0,6,2,4],
+"classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97":[1,0,0,6,2,18],
+"classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97":[3,0,0,6,2,18],
+"classgridfire_1_1reaction_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224":[1,0,0,6,2,2],
+"classgridfire_1_1reaction_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224":[3,0,0,6,2,2],
+"classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c":[1,0,0,6,2,1],
+"classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c":[3,0,0,6,2,1],
+"classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923":[1,0,0,6,2,23],
+"classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923":[3,0,0,6,2,23],
+"classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e":[1,0,0,6,2,22],
+"classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e":[3,0,0,6,2,22],
+"classgridfire_1_1reaction_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11":[1,0,0,6,2,36],
+"classgridfire_1_1reaction_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11":[3,0,0,6,2,36],
+"classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5":[1,0,0,6,2,11],
+"classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5":[3,0,0,6,2,11],
+"classgridfire_1_1reaction_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72":[1,0,0,6,2,35],
+"classgridfire_1_1reaction_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72":[3,0,0,6,2,35],
+"classgridfire_1_1reaction_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba":[1,0,0,6,2,14],
+"classgridfire_1_1reaction_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba":[3,0,0,6,2,14],
+"classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac":[1,0,0,6,2,27],
+"classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac":[3,0,0,6,2,27],
+"classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a":[1,0,0,6,2,0],
+"classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a":[3,0,0,6,2,0],
+"classgridfire_1_1reaction_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b":[1,0,0,6,2,8],
+"classgridfire_1_1reaction_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b":[3,0,0,6,2,8],
+"classgridfire_1_1reaction_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45":[1,0,0,6,2,10],
+"classgridfire_1_1reaction_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45":[3,0,0,6,2,10],
+"classgridfire_1_1reaction_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8":[1,0,0,6,2,21],
+"classgridfire_1_1reaction_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8":[3,0,0,6,2,21],
+"classgridfire_1_1reaction_1_1_reaction.html#ac426457cf0a54a15b206549422083bac":[1,0,0,6,2,17],
+"classgridfire_1_1reaction_1_1_reaction.html#ac426457cf0a54a15b206549422083bac":[3,0,0,6,2,17],
+"classgridfire_1_1reaction_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3":[1,0,0,6,2,26],
+"classgridfire_1_1reaction_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3":[3,0,0,6,2,26],
+"classgridfire_1_1reaction_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec":[1,0,0,6,2,5],
+"classgridfire_1_1reaction_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec":[3,0,0,6,2,5],
+"classgridfire_1_1reaction_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5":[1,0,0,6,2,12],
+"classgridfire_1_1reaction_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5":[3,0,0,6,2,12],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html":[1,0,0,6,3],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html":[3,0,0,6,3],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a05f71d318564d880079fd6c96d59ae21":[1,0,0,6,3,6],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a05f71d318564d880079fd6c96d59ae21":[3,0,0,6,3,6],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a128660f5fbc67054f73811ed2982d24d":[1,0,0,6,3,18],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a128660f5fbc67054f73811ed2982d24d":[3,0,0,6,3,18],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a13e003529a17fa61aafdce3abd2dc773":[1,0,0,6,3,19],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a13e003529a17fa61aafdce3abd2dc773":[3,0,0,6,3,19],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a1596de3439735a45ac344fa85ace6c82":[1,0,0,6,3,14],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a1596de3439735a45ac344fa85ace6c82":[3,0,0,6,3,14],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a272800016c83f259f5c6a92dc797353c":[1,0,0,6,3,15],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a272800016c83f259f5c6a92dc797353c":[3,0,0,6,3,15],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a339dbbf883b6ae20e33d9782d8376bcf":[1,0,0,6,3,3],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a339dbbf883b6ae20e33d9782d8376bcf":[3,0,0,6,3,3],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a3a4c2448865580001fd3c797b9f56979":[1,0,0,6,3,26],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a3a4c2448865580001fd3c797b9f56979":[3,0,0,6,3,26],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a443ec5d7138764b32975232e13071ccf":[1,0,0,6,3,9],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a443ec5d7138764b32975232e13071ccf":[3,0,0,6,3,9],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a47265467dbf2c324ce3e4c85ebbaa6a7":[1,0,0,6,3,23],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a47265467dbf2c324ce3e4c85ebbaa6a7":[3,0,0,6,3,23],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a54c8cd7c34564277fe28eefc623f666e":[1,0,0,6,3,0],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a54c8cd7c34564277fe28eefc623f666e":[3,0,0,6,3,0],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5962968fe478c79250e9d88d80a87600":[1,0,0,6,3,27]
};
diff --git a/docs/html/navtreeindex4.js b/docs/html/navtreeindex4.js
index ac8d3b64..8f9e0d8a 100644
--- a/docs/html/navtreeindex4.js
+++ b/docs/html/navtreeindex4.js
@@ -1,253 +1,253 @@
var NAVTREEINDEX4 =
{
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a54c8cd7c34564277fe28eefc623f666e":[2,0,0,6,3,0],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5962968fe478c79250e9d88d80a87600":[0,8,0,6,3,27],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5962968fe478c79250e9d88d80a87600":[2,0,0,6,3,27],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5fda3af5ea9ae0ecfb60a61a9e07f5b4":[0,8,0,6,3,24],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5fda3af5ea9ae0ecfb60a61a9e07f5b4":[2,0,0,6,3,24],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a638067a3e55ec2a422206055881aaaad":[0,8,0,6,3,20],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a638067a3e55ec2a422206055881aaaad":[2,0,0,6,3,20],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2":[0,8,0,6,3,22],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2":[2,0,0,6,3,22],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a7777ecd0f594fdf66ce57d22610fad3c":[0,8,0,6,3,8],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a7777ecd0f594fdf66ce57d22610fad3c":[2,0,0,6,3,8],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a87257704009fcd57b553f86cdaacb597":[0,8,0,6,3,4],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a87257704009fcd57b553f86cdaacb597":[2,0,0,6,3,4],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a89c4c5af12aef7fbfc24316c88237e22":[0,8,0,6,3,21],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a89c4c5af12aef7fbfc24316c88237e22":[2,0,0,6,3,21],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a9def4c9a3a7a03625b7c467fe7440428":[0,8,0,6,3,1],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a9def4c9a3a7a03625b7c467fe7440428":[2,0,0,6,3,1],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#aac76ec883b4ecebb2a94b2485dae7105":[0,8,0,6,3,16],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#aac76ec883b4ecebb2a94b2485dae7105":[2,0,0,6,3,16],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ab8cb5fbce6b819b9e4e44b0c2db54c6f":[0,8,0,6,3,7],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ab8cb5fbce6b819b9e4e44b0c2db54c6f":[2,0,0,6,3,7],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac128da7417955ef8c5cb2bde5a1293c9":[0,8,0,6,3,13],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac128da7417955ef8c5cb2bde5a1293c9":[2,0,0,6,3,13],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac42606350d7557106f7954b1f114c128":[0,8,0,6,3,10],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac42606350d7557106f7954b1f114c128":[2,0,0,6,3,10],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac510dce14a6033551318c0c7b241f3c8":[0,8,0,6,3,17],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac510dce14a6033551318c0c7b241f3c8":[2,0,0,6,3,17],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac6fcc5b08938b73ff6dac680e5bf28d9":[0,8,0,6,3,25],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac6fcc5b08938b73ff6dac680e5bf28d9":[2,0,0,6,3,25],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad19adbee44a71559a53785e3b1fc7e92":[0,8,0,6,3,12],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad19adbee44a71559a53785e3b1fc7e92":[2,0,0,6,3,12],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad870856d206d93f27125c88d44ff9e34":[0,8,0,6,3,11],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad870856d206d93f27125c88d44ff9e34":[2,0,0,6,3,11],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ada1d1880be53b81a9ed7b966fd6ade5a":[0,8,0,6,3,2],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ada1d1880be53b81a9ed7b966fd6ade5a":[2,0,0,6,3,2],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#aee42bb25973dadc6629bdb5cb1db6369":[0,8,0,6,3,5],
-"classgridfire_1_1reaction_1_1_templated_reaction_set.html#aee42bb25973dadc6629bdb5cb1db6369":[2,0,0,6,3,5],
-"classgridfire_1_1screening_1_1_bare_screening_model.html":[0,8,0,7,0],
-"classgridfire_1_1screening_1_1_bare_screening_model.html":[2,0,0,7,0],
-"classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96":[0,8,0,7,0,0],
-"classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96":[2,0,0,7,0,0],
-"classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a":[0,8,0,7,0,1],
-"classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a":[2,0,0,7,0,1],
-"classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60":[0,8,0,7,0,3],
-"classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60":[2,0,0,7,0,3],
-"classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99":[0,8,0,7,0,2],
-"classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99":[2,0,0,7,0,2],
-"classgridfire_1_1screening_1_1_screening_model.html":[0,8,0,7,1],
-"classgridfire_1_1screening_1_1_screening_model.html":[2,0,0,7,1],
-"classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d":[0,8,0,7,1,0],
-"classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d":[2,0,0,7,1,0],
-"classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22":[0,8,0,7,1,2],
-"classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22":[2,0,0,7,1,2],
-"classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde":[0,8,0,7,1,3],
-"classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde":[2,0,0,7,1,3],
-"classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7":[0,8,0,7,1,1],
-"classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7":[2,0,0,7,1,1],
-"classgridfire_1_1screening_1_1_weak_screening_model.html":[0,8,0,7,2],
-"classgridfire_1_1screening_1_1_weak_screening_model.html":[2,0,0,7,2],
-"classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f":[0,8,0,7,2,3],
-"classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f":[2,0,0,7,2,3],
-"classgridfire_1_1screening_1_1_weak_screening_model.html#a2695206d46b9d2c2503f8e58c44df88f":[0,8,0,7,2,0],
-"classgridfire_1_1screening_1_1_weak_screening_model.html#a2695206d46b9d2c2503f8e58c44df88f":[2,0,0,7,2,0],
-"classgridfire_1_1screening_1_1_weak_screening_model.html#ac6bc78769670a460af1ff88284cb8ad4":[0,8,0,7,2,1],
-"classgridfire_1_1screening_1_1_weak_screening_model.html#ac6bc78769670a460af1ff88284cb8ad4":[2,0,0,7,2,1],
-"classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c":[0,8,0,7,2,2],
-"classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c":[2,0,0,7,2,2],
-"classgridfire_1_1solver_1_1_direct_network_solver.html":[0,8,0,8,0],
-"classgridfire_1_1solver_1_1_direct_network_solver.html":[2,0,0,8,0],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079":[0,8,0,8,0,4],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079":[2,0,0,8,0,4],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a":[0,8,0,8,0,2],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a":[2,0,0,8,0,2],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a2cc12e737a753a42b72a45be3fbfa8ab":[0,8,0,8,0,3],
-"classgridfire_1_1solver_1_1_direct_network_solver.html#a2cc12e737a753a42b72a45be3fbfa8ab":[2,0,0,8,0,3],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html":[0,8,0,8,1],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html":[2,0,0,8,1],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505":[0,8,0,8,1,0],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505":[2,0,0,8,1,0],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318":[0,8,0,8,1,1],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318":[2,0,0,8,1,1],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8":[0,8,0,8,1,3],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8":[2,0,0,8,1,3],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f":[0,8,0,8,1,2],
-"classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f":[2,0,0,8,1,2],
-"conceptgridfire_1_1_engine_type.html":[0,8,0,28],
-"conceptgridfire_1_1_engine_type.html":[1,0,1],
-"conceptgridfire_1_1_is_arithmetic_or_a_d.html":[0,8,0,27],
-"conceptgridfire_1_1_is_arithmetic_or_a_d.html":[1,0,0],
-"concepts.html":[1],
-"construction_8cpp.html":[3,0,1,1,0,0,0],
-"construction_8cpp_source.html":[3,0,1,1,0,0,0],
-"construction_8h.html":[3,0,1,0,0,0,0,0],
-"construction_8h_source.html":[3,0,1,0,0,0,0,0],
-"dir_048d8e0a5613c02d1dd32a8c2b4fae8e.html":[3,0,1,2,3],
-"dir_1ae9febcce3c81c54e014e2202672ae2.html":[3,0,1,2,2],
-"dir_1c671bae89ad45c4f6571bd7c3fca7f2.html":[3,0,1,0,0,3],
-"dir_1d1d50ce0d70b163d7d102a960190628.html":[3,0,1,0,0,4],
-"dir_3626e0c0e3c5d7812d6b277dfa4ec364.html":[3,0,1,0,0],
-"dir_3cc0b3e3c66436f74054a789a4a47fbc.html":[3,0,1,1,0],
-"dir_43d540904cac5d711ae55af9d63e6471.html":[3,0,1,1,0,0],
-"dir_49e56c817e5e54854c35e136979f97ca.html":[3,0,0],
-"dir_4eba3bf96e8b886928c6be1f4154164d.html":[3,0,1,2,6],
-"dir_4fd0dc9a50f7a53e22cb356c650f915e.html":[3,0,1,1,5],
-"dir_5c0d64f70903e893b1efe571a4b8de29.html":[3,0,1,2],
-"dir_64012712bac8d4927da7703e58c6c3c3.html":[3,0,1,2,7],
-"dir_65bc51589f8002bfcb72faf47ab41180.html":[3,0,1,1,1],
-"dir_68267d1309a1af8e8297ef4c3efbcdba.html":[3,0,1],
-"dir_6f67cad5a3dd5daef2b4bab22419acbf.html":[3,0,1,2,9],
-"dir_736d89e8e2b688d729ae4656e8c69720.html":[3,0,1,2,0,0],
-"dir_7eae81c2ec58ffa76af06bb25bb86137.html":[3,0,1,2,4],
-"dir_80d0745b866022f2047f807b3376dff7.html":[3,0,1,0,0,0,1],
-"dir_87d18a4dc5174905bfd7d2dc734defe6.html":[3,0,1,1,6],
-"dir_8e34b6fea5a3d13256b367f27bc2135d.html":[3,0,1,0,0,8],
-"dir_902e06e9d82d80b06df7be6e417fa9ee.html":[3,0,1,1,3],
-"dir_97105ebeaecd797c90bf23079fd9b0e6.html":[3,0,1,2,4,0],
-"dir_9f35e0f3e3878d201f80e9b6c966a769.html":[3,0,1,0,0,2],
-"dir_a2537f6f0ba382cc4200a69fb7d9b7da.html":[3,0,1,1,2,0],
-"dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html":[3,0,1,0,0,6],
-"dir_aff155d61c3b73b9ab7dcdc908c4d49e.html":[3,0,1,0,0,0],
-"dir_b0856f6b0d80ccb263b2f415c91f9e17.html":[3,0,1,0],
-"dir_b854c27c088682f074a57cfa949846df.html":[3,0,1,2,5],
-"dir_bf5ef66fceb9aacde9848923f7632729.html":[3,0,1,2,1],
-"dir_bfff093b02c380358955f421b7f67de5.html":[3,0,1,2,7,0],
-"dir_c34d5e8363cf0aa3fabc4f3fad3412a4.html":[3,0,0,0],
-"dir_c73541f51459c9e567d01a066f229f1c.html":[3,0,1,1,4],
-"dir_c85d3e3c5052e9ad9ce18c6863244a25.html":[3,0,1,1],
-"dir_cd87a60aa1dbf4ee960e0533fd7a9743.html":[3,0,1,0,0,1],
-"dir_d0a49494bbb6e91de214e6669adf5efa.html":[3,0,1,2,0],
-"dir_d5492b42d970deba31f48df1b35a6c47.html":[3,0,1,0,0,0,2],
-"dir_d70391a28a381da2f0629437a1b6db28.html":[3,0,1,2,8],
-"dir_dd8201c056cb17022d2864e6e5aa368d.html":[3,0,1,2,3,0],
-"dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html":[3,0,1,0,0,7],
-"dir_e87948a39c0c6c3f66d9f5f967ab86bd.html":[3,0,1,1,0,1],
-"dir_f2d7b0c77cb2532170ac94ead6e4ba70.html":[3,0,1,0,0,5],
-"dir_f575fd282ecf3769a887e0c3d3cafd55.html":[3,0,1,0,0,4,0],
-"dir_fe5109f07276e0a4a472af6b22fd99c7.html":[3,0,1,1,2],
-"dir_fe7d6b610561b6ccbae8c0cd892464cf.html":[3,0,1,2,6,0],
-"dir_fedd162cb41c94f7e299c266e75251fd.html":[3,0,1,0,0,0,0],
-"engine_2bindings_8cpp.html":[3,0,1,2,0,1],
-"engine_2bindings_8cpp.html#a01ff627d4ef6a21b3323cd383dd29841":[3,0,1,2,0,1,2],
-"engine_2bindings_8cpp.html#a4066aaf2dca39ee1ed37ad53169f1cdf":[3,0,1,2,0,1,1],
-"engine_2bindings_8cpp.html#a61b016667b7477d898be2a2a5bc7cab8":[3,0,1,2,0,1,3],
-"engine_2bindings_8cpp.html#a74a027923ac27f235cf565f8d2a355bd":[3,0,1,2,0,1,6],
-"engine_2bindings_8cpp.html#a884aac3c3f2e8c62843c69329052d642":[3,0,1,2,0,1,4],
-"engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c":[3,0,1,2,0,1,5],
-"engine_2bindings_8cpp_source.html":[3,0,1,2,0,1],
-"engine_2bindings_8h.html":[3,0,1,2,0,2],
-"engine_2bindings_8h.html#a01ff627d4ef6a21b3323cd383dd29841":[3,0,1,2,0,2,1],
-"engine_2bindings_8h.html#a4066aaf2dca39ee1ed37ad53169f1cdf":[3,0,1,2,0,2,0],
-"engine_2bindings_8h.html#a61b016667b7477d898be2a2a5bc7cab8":[3,0,1,2,0,2,2],
-"engine_2bindings_8h.html#a73a2ec4150b3954550f16b97102ec993":[3,0,1,2,0,2,4],
-"engine_2bindings_8h.html#a74a027923ac27f235cf565f8d2a355bd":[3,0,1,2,0,2,5],
-"engine_2bindings_8h.html#a884aac3c3f2e8c62843c69329052d642":[3,0,1,2,0,2,3],
-"engine_2bindings_8h_source.html":[3,0,1,2,0,2],
-"engine_8h.html":[3,0,1,0,0,0,3],
-"engine_8h_source.html":[3,0,1,0,0,0,3],
-"engine__abstract_8h.html":[3,0,1,0,0,0,4],
-"engine__abstract_8h_source.html":[3,0,1,0,0,0,4],
-"engine__adaptive_8cpp.html":[3,0,1,1,0,1,0],
-"engine__adaptive_8cpp_source.html":[3,0,1,1,0,1,0],
-"engine__adaptive_8h.html":[3,0,1,0,0,0,2,0],
-"engine__adaptive_8h_source.html":[3,0,1,0,0,0,2,0],
-"engine__approx8_8cpp.html":[3,0,1,1,0,2],
-"engine__approx8_8cpp_source.html":[3,0,1,1,0,2],
-"engine__approx8_8h.html":[3,0,1,0,0,0,5],
-"engine__approx8_8h_source.html":[3,0,1,0,0,0,5],
-"engine__defined_8cpp.html":[3,0,1,1,0,1,1],
-"engine__defined_8cpp_source.html":[3,0,1,1,0,1,1],
-"engine__defined_8h.html":[3,0,1,0,0,0,2,1],
-"engine__defined_8h_source.html":[3,0,1,0,0,0,2,1],
-"engine__graph_8cpp.html":[3,0,1,1,0,3],
-"engine__graph_8cpp_source.html":[3,0,1,1,0,3],
-"engine__graph_8h.html":[3,0,1,0,0,0,6],
-"engine__graph_8h_source.html":[3,0,1,0,0,0,6],
-"engine__multiscale_8cpp.html":[3,0,1,1,0,1,2],
-"engine__multiscale_8cpp_source.html":[3,0,1,1,0,1,2],
-"engine__multiscale_8h.html":[3,0,1,0,0,0,2,2],
-"engine__multiscale_8h_source.html":[3,0,1,0,0,0,2,2],
-"engine__priming_8cpp.html":[3,0,1,1,0,1,3],
-"engine__priming_8cpp_source.html":[3,0,1,1,0,1,3],
-"engine__priming_8h.html":[3,0,1,0,0,0,2,3],
-"engine__priming_8h_source.html":[3,0,1,0,0,0,2,3],
-"engine__procedures_8h.html":[3,0,1,0,0,0,0,1],
-"engine__procedures_8h_source.html":[3,0,1,0,0,0,0,1],
-"engine__types_8h.html":[3,0,1,0,0,0,1,1],
-"engine__types_8h_source.html":[3,0,1,0,0,0,1,1],
-"engine__view__abstract_8h.html":[3,0,1,0,0,0,2,4],
-"engine__view__abstract_8h_source.html":[3,0,1,0,0,0,2,4],
-"engine__views_8h.html":[3,0,1,0,0,0,2,5],
-"engine__views_8h_source.html":[3,0,1,0,0,0,2,5],
-"error__engine_8h.html":[3,0,1,0,0,1,0],
-"error__engine_8h_source.html":[3,0,1,0,0,1,0],
-"examples.html":[4],
-"exceptions_2bindings_8cpp.html":[3,0,1,2,1,0],
-"exceptions_2bindings_8cpp.html#a15a0d54e4fe015a87d9f7a63284c2958":[3,0,1,2,1,0,0],
-"exceptions_2bindings_8cpp_source.html":[3,0,1,2,1,0],
-"exceptions_2bindings_8h.html":[3,0,1,2,1,1],
-"exceptions_2bindings_8h.html#a01725278af607be0d8f5a2d892a5ef73":[3,0,1,2,1,1,0],
-"exceptions_2bindings_8h_source.html":[3,0,1,2,1,1],
-"exceptions_8h.html":[3,0,1,0,0,1,1],
-"exceptions_8h_source.html":[3,0,1,0,0,1,1],
-"expectations_2bindings_8cpp.html":[3,0,1,2,2,0],
-"expectations_2bindings_8cpp.html#ac6720822f6ad76636adbc1ae6febc2c2":[3,0,1,2,2,0,0],
-"expectations_2bindings_8cpp_source.html":[3,0,1,2,2,0],
-"expectations_2bindings_8h.html":[3,0,1,2,2,1],
-"expectations_2bindings_8h.html#a12e0304a6d29af179118a29c8ea93dc0":[3,0,1,2,2,1,0],
-"expectations_2bindings_8h_source.html":[3,0,1,2,2,1],
-"expectations_8h.html":[3,0,1,0,0,2,0],
-"expectations_8h_source.html":[3,0,1,0,0,2,0],
-"expected__engine_8h.html":[3,0,1,0,0,2,1],
-"expected__engine_8h_source.html":[3,0,1,0,0,2,1],
-"files.html":[3,0],
-"functions.html":[2,3,0],
-"functions.html":[2,3,0,0],
-"functions_b.html":[2,3,0,1],
-"functions_c.html":[2,3,0,2],
-"functions_d.html":[2,3,0,3],
-"functions_e.html":[2,3,0,4],
-"functions_enum.html":[2,3,4],
-"functions_eval.html":[2,3,5],
-"functions_f.html":[2,3,0,5],
-"functions_func.html":[2,3,1],
-"functions_func.html":[2,3,1,0],
-"functions_func_b.html":[2,3,1,1],
-"functions_func_c.html":[2,3,1,2],
-"functions_func_d.html":[2,3,1,3],
-"functions_func_e.html":[2,3,1,4],
-"functions_func_f.html":[2,3,1,5],
-"functions_func_g.html":[2,3,1,6],
-"functions_func_h.html":[2,3,1,7],
-"functions_func_i.html":[2,3,1,8],
-"functions_func_j.html":[2,3,1,9],
-"functions_func_l.html":[2,3,1,10],
-"functions_func_m.html":[2,3,1,11],
-"functions_func_n.html":[2,3,1,12],
-"functions_func_o.html":[2,3,1,13],
-"functions_func_p.html":[2,3,1,14],
-"functions_func_q.html":[2,3,1,15],
-"functions_func_r.html":[2,3,1,16],
-"functions_func_s.html":[2,3,1,17],
-"functions_func_t.html":[2,3,1,18],
-"functions_func_u.html":[2,3,1,19],
-"functions_func_v.html":[2,3,1,20],
-"functions_func_w.html":[2,3,1,21],
-"functions_func_~.html":[2,3,1,22],
-"functions_g.html":[2,3,0,6],
-"functions_h.html":[2,3,0,7],
-"functions_i.html":[2,3,0,8],
-"functions_j.html":[2,3,0,9]
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5962968fe478c79250e9d88d80a87600":[3,0,0,6,3,27],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5fda3af5ea9ae0ecfb60a61a9e07f5b4":[1,0,0,6,3,24],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5fda3af5ea9ae0ecfb60a61a9e07f5b4":[3,0,0,6,3,24],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a638067a3e55ec2a422206055881aaaad":[1,0,0,6,3,20],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a638067a3e55ec2a422206055881aaaad":[3,0,0,6,3,20],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2":[1,0,0,6,3,22],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2":[3,0,0,6,3,22],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a7777ecd0f594fdf66ce57d22610fad3c":[1,0,0,6,3,8],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a7777ecd0f594fdf66ce57d22610fad3c":[3,0,0,6,3,8],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a87257704009fcd57b553f86cdaacb597":[1,0,0,6,3,4],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a87257704009fcd57b553f86cdaacb597":[3,0,0,6,3,4],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a89c4c5af12aef7fbfc24316c88237e22":[1,0,0,6,3,21],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a89c4c5af12aef7fbfc24316c88237e22":[3,0,0,6,3,21],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a9def4c9a3a7a03625b7c467fe7440428":[1,0,0,6,3,1],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#a9def4c9a3a7a03625b7c467fe7440428":[3,0,0,6,3,1],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#aac76ec883b4ecebb2a94b2485dae7105":[1,0,0,6,3,16],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#aac76ec883b4ecebb2a94b2485dae7105":[3,0,0,6,3,16],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ab8cb5fbce6b819b9e4e44b0c2db54c6f":[1,0,0,6,3,7],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ab8cb5fbce6b819b9e4e44b0c2db54c6f":[3,0,0,6,3,7],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac128da7417955ef8c5cb2bde5a1293c9":[1,0,0,6,3,13],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac128da7417955ef8c5cb2bde5a1293c9":[3,0,0,6,3,13],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac42606350d7557106f7954b1f114c128":[1,0,0,6,3,10],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac42606350d7557106f7954b1f114c128":[3,0,0,6,3,10],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac510dce14a6033551318c0c7b241f3c8":[1,0,0,6,3,17],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac510dce14a6033551318c0c7b241f3c8":[3,0,0,6,3,17],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac6fcc5b08938b73ff6dac680e5bf28d9":[1,0,0,6,3,25],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac6fcc5b08938b73ff6dac680e5bf28d9":[3,0,0,6,3,25],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad19adbee44a71559a53785e3b1fc7e92":[1,0,0,6,3,12],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad19adbee44a71559a53785e3b1fc7e92":[3,0,0,6,3,12],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad870856d206d93f27125c88d44ff9e34":[1,0,0,6,3,11],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad870856d206d93f27125c88d44ff9e34":[3,0,0,6,3,11],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ada1d1880be53b81a9ed7b966fd6ade5a":[1,0,0,6,3,2],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#ada1d1880be53b81a9ed7b966fd6ade5a":[3,0,0,6,3,2],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#aee42bb25973dadc6629bdb5cb1db6369":[1,0,0,6,3,5],
+"classgridfire_1_1reaction_1_1_templated_reaction_set.html#aee42bb25973dadc6629bdb5cb1db6369":[3,0,0,6,3,5],
+"classgridfire_1_1screening_1_1_bare_screening_model.html":[1,0,0,7,0],
+"classgridfire_1_1screening_1_1_bare_screening_model.html":[3,0,0,7,0],
+"classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96":[1,0,0,7,0,0],
+"classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96":[3,0,0,7,0,0],
+"classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a":[1,0,0,7,0,1],
+"classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a":[3,0,0,7,0,1],
+"classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60":[1,0,0,7,0,3],
+"classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60":[3,0,0,7,0,3],
+"classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99":[1,0,0,7,0,2],
+"classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99":[3,0,0,7,0,2],
+"classgridfire_1_1screening_1_1_screening_model.html":[1,0,0,7,1],
+"classgridfire_1_1screening_1_1_screening_model.html":[3,0,0,7,1],
+"classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d":[1,0,0,7,1,0],
+"classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d":[3,0,0,7,1,0],
+"classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22":[1,0,0,7,1,2],
+"classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22":[3,0,0,7,1,2],
+"classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde":[1,0,0,7,1,3],
+"classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde":[3,0,0,7,1,3],
+"classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7":[1,0,0,7,1,1],
+"classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7":[3,0,0,7,1,1],
+"classgridfire_1_1screening_1_1_weak_screening_model.html":[1,0,0,7,2],
+"classgridfire_1_1screening_1_1_weak_screening_model.html":[3,0,0,7,2],
+"classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f":[1,0,0,7,2,3],
+"classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f":[3,0,0,7,2,3],
+"classgridfire_1_1screening_1_1_weak_screening_model.html#a2695206d46b9d2c2503f8e58c44df88f":[1,0,0,7,2,0],
+"classgridfire_1_1screening_1_1_weak_screening_model.html#a2695206d46b9d2c2503f8e58c44df88f":[3,0,0,7,2,0],
+"classgridfire_1_1screening_1_1_weak_screening_model.html#ac6bc78769670a460af1ff88284cb8ad4":[1,0,0,7,2,1],
+"classgridfire_1_1screening_1_1_weak_screening_model.html#ac6bc78769670a460af1ff88284cb8ad4":[3,0,0,7,2,1],
+"classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c":[1,0,0,7,2,2],
+"classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c":[3,0,0,7,2,2],
+"classgridfire_1_1solver_1_1_direct_network_solver.html":[1,0,0,8,0],
+"classgridfire_1_1solver_1_1_direct_network_solver.html":[3,0,0,8,0],
+"classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079":[1,0,0,8,0,4],
+"classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079":[3,0,0,8,0,4],
+"classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a":[1,0,0,8,0,2],
+"classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a":[3,0,0,8,0,2],
+"classgridfire_1_1solver_1_1_direct_network_solver.html#a2cc12e737a753a42b72a45be3fbfa8ab":[1,0,0,8,0,3],
+"classgridfire_1_1solver_1_1_direct_network_solver.html#a2cc12e737a753a42b72a45be3fbfa8ab":[3,0,0,8,0,3],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html":[1,0,0,8,1],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html":[3,0,0,8,1],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505":[1,0,0,8,1,0],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505":[3,0,0,8,1,0],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318":[1,0,0,8,1,1],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318":[3,0,0,8,1,1],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8":[1,0,0,8,1,3],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8":[3,0,0,8,1,3],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f":[1,0,0,8,1,2],
+"classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f":[3,0,0,8,1,2],
+"conceptgridfire_1_1_engine_type.html":[1,0,0,28],
+"conceptgridfire_1_1_engine_type.html":[2,0,1],
+"conceptgridfire_1_1_is_arithmetic_or_a_d.html":[1,0,0,27],
+"conceptgridfire_1_1_is_arithmetic_or_a_d.html":[2,0,0],
+"concepts.html":[2],
+"construction_8cpp.html":[4,0,1,1,0,0,0],
+"construction_8cpp_source.html":[4,0,1,1,0,0,0],
+"construction_8h.html":[4,0,1,0,0,0,0,0],
+"construction_8h_source.html":[4,0,1,0,0,0,0,0],
+"dir_048d8e0a5613c02d1dd32a8c2b4fae8e.html":[4,0,1,2,3],
+"dir_1ae9febcce3c81c54e014e2202672ae2.html":[4,0,1,2,2],
+"dir_1c671bae89ad45c4f6571bd7c3fca7f2.html":[4,0,1,0,0,3],
+"dir_1d1d50ce0d70b163d7d102a960190628.html":[4,0,1,0,0,4],
+"dir_3626e0c0e3c5d7812d6b277dfa4ec364.html":[4,0,1,0,0],
+"dir_3cc0b3e3c66436f74054a789a4a47fbc.html":[4,0,1,1,0],
+"dir_43d540904cac5d711ae55af9d63e6471.html":[4,0,1,1,0,0],
+"dir_49e56c817e5e54854c35e136979f97ca.html":[4,0,0],
+"dir_4eba3bf96e8b886928c6be1f4154164d.html":[4,0,1,2,6],
+"dir_4fd0dc9a50f7a53e22cb356c650f915e.html":[4,0,1,1,5],
+"dir_5c0d64f70903e893b1efe571a4b8de29.html":[4,0,1,2],
+"dir_64012712bac8d4927da7703e58c6c3c3.html":[4,0,1,2,7],
+"dir_65bc51589f8002bfcb72faf47ab41180.html":[4,0,1,1,1],
+"dir_68267d1309a1af8e8297ef4c3efbcdba.html":[4,0,1],
+"dir_6f67cad5a3dd5daef2b4bab22419acbf.html":[4,0,1,2,9],
+"dir_736d89e8e2b688d729ae4656e8c69720.html":[4,0,1,2,0,0],
+"dir_7eae81c2ec58ffa76af06bb25bb86137.html":[4,0,1,2,4],
+"dir_80d0745b866022f2047f807b3376dff7.html":[4,0,1,0,0,0,1],
+"dir_87d18a4dc5174905bfd7d2dc734defe6.html":[4,0,1,1,6],
+"dir_8e34b6fea5a3d13256b367f27bc2135d.html":[4,0,1,0,0,8],
+"dir_902e06e9d82d80b06df7be6e417fa9ee.html":[4,0,1,1,3],
+"dir_97105ebeaecd797c90bf23079fd9b0e6.html":[4,0,1,2,4,0],
+"dir_9f35e0f3e3878d201f80e9b6c966a769.html":[4,0,1,0,0,2],
+"dir_a2537f6f0ba382cc4200a69fb7d9b7da.html":[4,0,1,1,2,0],
+"dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html":[4,0,1,0,0,6],
+"dir_aff155d61c3b73b9ab7dcdc908c4d49e.html":[4,0,1,0,0,0],
+"dir_b0856f6b0d80ccb263b2f415c91f9e17.html":[4,0,1,0],
+"dir_b854c27c088682f074a57cfa949846df.html":[4,0,1,2,5],
+"dir_bf5ef66fceb9aacde9848923f7632729.html":[4,0,1,2,1],
+"dir_bfff093b02c380358955f421b7f67de5.html":[4,0,1,2,7,0],
+"dir_c34d5e8363cf0aa3fabc4f3fad3412a4.html":[4,0,0,0],
+"dir_c73541f51459c9e567d01a066f229f1c.html":[4,0,1,1,4],
+"dir_c85d3e3c5052e9ad9ce18c6863244a25.html":[4,0,1,1],
+"dir_cd87a60aa1dbf4ee960e0533fd7a9743.html":[4,0,1,0,0,1],
+"dir_d0a49494bbb6e91de214e6669adf5efa.html":[4,0,1,2,0],
+"dir_d5492b42d970deba31f48df1b35a6c47.html":[4,0,1,0,0,0,2],
+"dir_d70391a28a381da2f0629437a1b6db28.html":[4,0,1,2,8],
+"dir_dd8201c056cb17022d2864e6e5aa368d.html":[4,0,1,2,3,0],
+"dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html":[4,0,1,0,0,7],
+"dir_e87948a39c0c6c3f66d9f5f967ab86bd.html":[4,0,1,1,0,1],
+"dir_f2d7b0c77cb2532170ac94ead6e4ba70.html":[4,0,1,0,0,5],
+"dir_f575fd282ecf3769a887e0c3d3cafd55.html":[4,0,1,0,0,4,0],
+"dir_fe5109f07276e0a4a472af6b22fd99c7.html":[4,0,1,1,2],
+"dir_fe7d6b610561b6ccbae8c0cd892464cf.html":[4,0,1,2,6,0],
+"dir_fedd162cb41c94f7e299c266e75251fd.html":[4,0,1,0,0,0,0],
+"engine_2bindings_8cpp.html":[4,0,1,2,0,1],
+"engine_2bindings_8cpp.html#a01ff627d4ef6a21b3323cd383dd29841":[4,0,1,2,0,1,2],
+"engine_2bindings_8cpp.html#a4066aaf2dca39ee1ed37ad53169f1cdf":[4,0,1,2,0,1,1],
+"engine_2bindings_8cpp.html#a61b016667b7477d898be2a2a5bc7cab8":[4,0,1,2,0,1,3],
+"engine_2bindings_8cpp.html#a74a027923ac27f235cf565f8d2a355bd":[4,0,1,2,0,1,6],
+"engine_2bindings_8cpp.html#a884aac3c3f2e8c62843c69329052d642":[4,0,1,2,0,1,4],
+"engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c":[4,0,1,2,0,1,5],
+"engine_2bindings_8cpp_source.html":[4,0,1,2,0,1],
+"engine_2bindings_8h.html":[4,0,1,2,0,2],
+"engine_2bindings_8h.html#a01ff627d4ef6a21b3323cd383dd29841":[4,0,1,2,0,2,1],
+"engine_2bindings_8h.html#a4066aaf2dca39ee1ed37ad53169f1cdf":[4,0,1,2,0,2,0],
+"engine_2bindings_8h.html#a61b016667b7477d898be2a2a5bc7cab8":[4,0,1,2,0,2,2],
+"engine_2bindings_8h.html#a73a2ec4150b3954550f16b97102ec993":[4,0,1,2,0,2,4],
+"engine_2bindings_8h.html#a74a027923ac27f235cf565f8d2a355bd":[4,0,1,2,0,2,5],
+"engine_2bindings_8h.html#a884aac3c3f2e8c62843c69329052d642":[4,0,1,2,0,2,3],
+"engine_2bindings_8h_source.html":[4,0,1,2,0,2],
+"engine_8h.html":[4,0,1,0,0,0,3],
+"engine_8h_source.html":[4,0,1,0,0,0,3],
+"engine__abstract_8h.html":[4,0,1,0,0,0,4],
+"engine__abstract_8h_source.html":[4,0,1,0,0,0,4],
+"engine__adaptive_8cpp.html":[4,0,1,1,0,1,0],
+"engine__adaptive_8cpp_source.html":[4,0,1,1,0,1,0],
+"engine__adaptive_8h.html":[4,0,1,0,0,0,2,0],
+"engine__adaptive_8h_source.html":[4,0,1,0,0,0,2,0],
+"engine__approx8_8cpp.html":[4,0,1,1,0,2],
+"engine__approx8_8cpp_source.html":[4,0,1,1,0,2],
+"engine__approx8_8h.html":[4,0,1,0,0,0,5],
+"engine__approx8_8h_source.html":[4,0,1,0,0,0,5],
+"engine__defined_8cpp.html":[4,0,1,1,0,1,1],
+"engine__defined_8cpp_source.html":[4,0,1,1,0,1,1],
+"engine__defined_8h.html":[4,0,1,0,0,0,2,1],
+"engine__defined_8h_source.html":[4,0,1,0,0,0,2,1],
+"engine__graph_8cpp.html":[4,0,1,1,0,3],
+"engine__graph_8cpp_source.html":[4,0,1,1,0,3],
+"engine__graph_8h.html":[4,0,1,0,0,0,6],
+"engine__graph_8h_source.html":[4,0,1,0,0,0,6],
+"engine__multiscale_8cpp.html":[4,0,1,1,0,1,2],
+"engine__multiscale_8cpp_source.html":[4,0,1,1,0,1,2],
+"engine__multiscale_8h.html":[4,0,1,0,0,0,2,2],
+"engine__multiscale_8h_source.html":[4,0,1,0,0,0,2,2],
+"engine__priming_8cpp.html":[4,0,1,1,0,1,3],
+"engine__priming_8cpp_source.html":[4,0,1,1,0,1,3],
+"engine__priming_8h.html":[4,0,1,0,0,0,2,3],
+"engine__priming_8h_source.html":[4,0,1,0,0,0,2,3],
+"engine__procedures_8h.html":[4,0,1,0,0,0,0,1],
+"engine__procedures_8h_source.html":[4,0,1,0,0,0,0,1],
+"engine__types_8h.html":[4,0,1,0,0,0,1,1],
+"engine__types_8h_source.html":[4,0,1,0,0,0,1,1],
+"engine__view__abstract_8h.html":[4,0,1,0,0,0,2,4],
+"engine__view__abstract_8h_source.html":[4,0,1,0,0,0,2,4],
+"engine__views_8h.html":[4,0,1,0,0,0,2,5],
+"engine__views_8h_source.html":[4,0,1,0,0,0,2,5],
+"error__engine_8h.html":[4,0,1,0,0,1,0],
+"error__engine_8h_source.html":[4,0,1,0,0,1,0],
+"examples.html":[5],
+"exceptions_2bindings_8cpp.html":[4,0,1,2,1,0],
+"exceptions_2bindings_8cpp.html#a15a0d54e4fe015a87d9f7a63284c2958":[4,0,1,2,1,0,0],
+"exceptions_2bindings_8cpp_source.html":[4,0,1,2,1,0],
+"exceptions_2bindings_8h.html":[4,0,1,2,1,1],
+"exceptions_2bindings_8h.html#a01725278af607be0d8f5a2d892a5ef73":[4,0,1,2,1,1,0],
+"exceptions_2bindings_8h_source.html":[4,0,1,2,1,1],
+"exceptions_8h.html":[4,0,1,0,0,1,1],
+"exceptions_8h_source.html":[4,0,1,0,0,1,1],
+"expectations_2bindings_8cpp.html":[4,0,1,2,2,0],
+"expectations_2bindings_8cpp.html#ac6720822f6ad76636adbc1ae6febc2c2":[4,0,1,2,2,0,0],
+"expectations_2bindings_8cpp_source.html":[4,0,1,2,2,0],
+"expectations_2bindings_8h.html":[4,0,1,2,2,1],
+"expectations_2bindings_8h.html#a12e0304a6d29af179118a29c8ea93dc0":[4,0,1,2,2,1,0],
+"expectations_2bindings_8h_source.html":[4,0,1,2,2,1],
+"expectations_8h.html":[4,0,1,0,0,2,0],
+"expectations_8h_source.html":[4,0,1,0,0,2,0],
+"expected__engine_8h.html":[4,0,1,0,0,2,1],
+"expected__engine_8h_source.html":[4,0,1,0,0,2,1],
+"files.html":[4,0],
+"functions.html":[3,3,0],
+"functions.html":[3,3,0,0],
+"functions_b.html":[3,3,0,1],
+"functions_c.html":[3,3,0,2],
+"functions_d.html":[3,3,0,3],
+"functions_e.html":[3,3,0,4],
+"functions_enum.html":[3,3,4],
+"functions_eval.html":[3,3,5],
+"functions_f.html":[3,3,0,5],
+"functions_func.html":[3,3,1],
+"functions_func.html":[3,3,1,0],
+"functions_func_b.html":[3,3,1,1],
+"functions_func_c.html":[3,3,1,2],
+"functions_func_d.html":[3,3,1,3],
+"functions_func_e.html":[3,3,1,4],
+"functions_func_f.html":[3,3,1,5],
+"functions_func_g.html":[3,3,1,6],
+"functions_func_h.html":[3,3,1,7],
+"functions_func_i.html":[3,3,1,8],
+"functions_func_j.html":[3,3,1,9],
+"functions_func_l.html":[3,3,1,10],
+"functions_func_m.html":[3,3,1,11],
+"functions_func_n.html":[3,3,1,12],
+"functions_func_o.html":[3,3,1,13],
+"functions_func_p.html":[3,3,1,14],
+"functions_func_q.html":[3,3,1,15],
+"functions_func_r.html":[3,3,1,16],
+"functions_func_s.html":[3,3,1,17],
+"functions_func_t.html":[3,3,1,18],
+"functions_func_u.html":[3,3,1,19],
+"functions_func_v.html":[3,3,1,20],
+"functions_func_w.html":[3,3,1,21],
+"functions_func_~.html":[3,3,1,22],
+"functions_g.html":[3,3,0,6],
+"functions_h.html":[3,3,0,7],
+"functions_i.html":[3,3,0,8],
+"functions_j.html":[3,3,0,9],
+"functions_k.html":[3,3,0,10],
+"functions_l.html":[3,3,0,11]
};
diff --git a/docs/html/navtreeindex5.js b/docs/html/navtreeindex5.js
index b95cd870..234aee4f 100644
--- a/docs/html/navtreeindex5.js
+++ b/docs/html/navtreeindex5.js
@@ -1,50 +1,48 @@
var NAVTREEINDEX5 =
{
-"functions_k.html":[2,3,0,10],
-"functions_l.html":[2,3,0,11],
-"functions_m.html":[2,3,0,12],
-"functions_n.html":[2,3,0,13],
-"functions_o.html":[2,3,0,14],
-"functions_p.html":[2,3,0,15],
-"functions_q.html":[2,3,0,16],
-"functions_r.html":[2,3,0,17],
-"functions_rela.html":[2,3,6],
-"functions_s.html":[2,3,0,18],
-"functions_t.html":[2,3,0,19],
-"functions_type.html":[2,3,3],
-"functions_u.html":[2,3,0,20],
-"functions_v.html":[2,3,0,21],
-"functions_vars.html":[2,3,2],
-"functions_vars.html":[2,3,2,0],
-"functions_vars_b.html":[2,3,2,1],
-"functions_vars_c.html":[2,3,2,2],
-"functions_vars_d.html":[2,3,2,3],
-"functions_vars_e.html":[2,3,2,4],
-"functions_vars_f.html":[2,3,2,5],
-"functions_vars_g.html":[2,3,2,6],
-"functions_vars_i.html":[2,3,2,7],
-"functions_vars_k.html":[2,3,2,8],
-"functions_vars_l.html":[2,3,2,9],
-"functions_vars_m.html":[2,3,2,10],
-"functions_vars_n.html":[2,3,2,11],
-"functions_vars_o.html":[2,3,2,12],
-"functions_vars_p.html":[2,3,2,13],
-"functions_vars_q.html":[2,3,2,14],
-"functions_vars_r.html":[2,3,2,15],
-"functions_vars_s.html":[2,3,2,16],
-"functions_vars_t.html":[2,3,2,17],
-"functions_vars_u.html":[2,3,2,18],
-"functions_vars_y.html":[2,3,2,19],
-"functions_vars_z.html":[2,3,2,20],
-"functions_w.html":[2,3,0,22],
-"functions_y.html":[2,3,0,23],
-"functions_z.html":[2,3,0,24],
-"functions_~.html":[2,3,0,25],
-"globals.html":[3,1,0],
-"globals_func.html":[3,1,1],
-"globals_type.html":[3,1,3],
-"globals_vars.html":[3,1,2],
-"hierarchy.html":[2,2],
+"functions_m.html":[3,3,0,12],
+"functions_n.html":[3,3,0,13],
+"functions_o.html":[3,3,0,14],
+"functions_p.html":[3,3,0,15],
+"functions_q.html":[3,3,0,16],
+"functions_r.html":[3,3,0,17],
+"functions_rela.html":[3,3,6],
+"functions_s.html":[3,3,0,18],
+"functions_t.html":[3,3,0,19],
+"functions_type.html":[3,3,3],
+"functions_u.html":[3,3,0,20],
+"functions_v.html":[3,3,0,21],
+"functions_vars.html":[3,3,2],
+"functions_vars.html":[3,3,2,0],
+"functions_vars_b.html":[3,3,2,1],
+"functions_vars_c.html":[3,3,2,2],
+"functions_vars_d.html":[3,3,2,3],
+"functions_vars_e.html":[3,3,2,4],
+"functions_vars_f.html":[3,3,2,5],
+"functions_vars_g.html":[3,3,2,6],
+"functions_vars_i.html":[3,3,2,7],
+"functions_vars_k.html":[3,3,2,8],
+"functions_vars_l.html":[3,3,2,9],
+"functions_vars_m.html":[3,3,2,10],
+"functions_vars_n.html":[3,3,2,11],
+"functions_vars_o.html":[3,3,2,12],
+"functions_vars_p.html":[3,3,2,13],
+"functions_vars_q.html":[3,3,2,14],
+"functions_vars_r.html":[3,3,2,15],
+"functions_vars_s.html":[3,3,2,16],
+"functions_vars_t.html":[3,3,2,17],
+"functions_vars_u.html":[3,3,2,18],
+"functions_vars_y.html":[3,3,2,19],
+"functions_vars_z.html":[3,3,2,20],
+"functions_w.html":[3,3,0,22],
+"functions_y.html":[3,3,0,23],
+"functions_z.html":[3,3,0,24],
+"functions_~.html":[3,3,0,25],
+"globals.html":[4,1,0],
+"globals_func.html":[4,1,1],
+"globals_type.html":[4,1,3],
+"globals_vars.html":[4,1,2],
+"hierarchy.html":[3,2],
"index.html":[],
"index.html#autotoc_md1":[0],
"index.html#autotoc_md10":[2,0],
@@ -68,186 +66,188 @@ var NAVTREEINDEX5 =
"index.html#autotoc_md7":[1,4],
"index.html#autotoc_md8":[1,5],
"index.html#autotoc_md9":[2],
-"io_2bindings_8cpp.html":[3,0,1,2,3,1],
-"io_2bindings_8cpp.html#a7f552627cbe94906e0ee98b121e77862":[3,0,1,2,3,1,0],
-"io_2bindings_8cpp_source.html":[3,0,1,2,3,1],
-"io_2bindings_8h.html":[3,0,1,2,3,2],
-"io_2bindings_8h.html#a1d91b8298302b9f5401bf06c22651df4":[3,0,1,2,3,2,0],
-"io_2bindings_8h_source.html":[3,0,1,2,3,2],
-"io_8h.html":[3,0,1,0,0,3,0],
-"io_8h_source.html":[3,0,1,0,0,3,0],
-"logging_8cpp.html":[3,0,1,1,6,0],
-"logging_8cpp_source.html":[3,0,1,1,6,0],
-"logging_8h.html":[3,0,1,0,0,8,0],
-"logging_8h_source.html":[3,0,1,0,0,8,0],
-"namespacegridfire.html":[0,8,0],
-"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57":[0,8,0,34],
-"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a100e3bf0197221c19b222badf42aa964":[0,8,0,34,4],
-"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a264572d66aed5373d19dc80c7cde1f46":[0,8,0,34,2],
-"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a3fc719e07f9f63e7f11a3d4fb74b476f":[0,8,0,34,3],
-"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a5105376c2b90747e00bed5bf2953dd56":[0,8,0,34,5],
-"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a928d0f1285ee7d36c1c2fa1b1b7a164c":[0,8,0,34,1],
-"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75":[0,8,0,34,0],
-"namespacegridfire.html#a02be158966bf82a91b159b7a962c3fa5":[0,8,0,48],
-"namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc":[0,8,0,29],
-"namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6":[0,8,0,30],
-"namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37":[0,8,0,35],
-"namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea":[0,8,0,35,0],
-"namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182":[0,8,0,35,1],
-"namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2":[0,8,0,35,2],
-"namespacegridfire.html#a4e9cabad30b57d636c2f0d73d8cc6bb4":[0,8,0,44],
-"namespacegridfire.html#a745c6568723947f8e1ff874c9d3f4733":[0,8,0,37],
-"namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d":[0,8,0,39],
-"namespacegridfire.html#a898dfe22579e649935645cbd6f073178":[0,8,0,33],
-"namespacegridfire.html#a8b245f261cd8d1711ae8d593b054cf98":[0,8,0,43],
-"namespacegridfire.html#a8b632637f62614f509cde0e404a79054":[0,8,0,50],
-"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154":[0,8,0,36],
-"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931":[0,8,0,36,5],
-"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287":[0,8,0,36,2],
-"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a":[0,8,0,36,0],
-"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45":[0,8,0,36,1],
-"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a":[0,8,0,36,4],
-"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e":[0,8,0,36,6],
-"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f":[0,8,0,36,3],
-"namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2":[0,8,0,40],
-"namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06":[0,8,0,45],
-"namespacegridfire.html#aa86f08712565f278adacc7cd2361eb31":[0,8,0,31],
-"namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f":[0,8,0,42],
-"namespacegridfire.html#ad838ce3fb6cc02c3fd90b924a0dd91b1":[0,8,0,32],
-"namespacegridfire.html#ada3c137c014ecd8d06200fea2d1a9f50":[0,8,0,46],
-"namespacegridfire.html#ae01b1738df1921db565bcbd68dd6cf64":[0,8,0,47],
-"namespacegridfire.html#aedddb89e400a6111f69bfe0c3fd4214e":[0,8,0,38],
-"namespacegridfire.html#aefc63ddbfe97dcb4178c94dfd1c4b256":[0,8,0,41],
-"namespacegridfire.html#afd6f117eb2da3bab3873edc09d0926cf":[0,8,0,49],
-"namespacegridfire_1_1approx8.html":[0,8,0,0],
-"namespacegridfire_1_1approx8.html#a12cb71ba6ed03750af9e7659464197ea":[0,8,0,0,13],
-"namespacegridfire_1_1approx8.html#a16739298c01e56967ce784a9a957439f":[0,8,0,0,23],
-"namespacegridfire_1_1approx8.html#a20f9c48e60a5abf0b6868d1d05080222":[0,8,0,0,12],
-"namespacegridfire_1_1approx8.html#a2715e1a6421717991814892046b896e3":[0,8,0,0,26],
-"namespacegridfire_1_1approx8.html#a275aecf94e3145c2ff3d1756deda54ce":[0,8,0,0,4],
-"namespacegridfire_1_1approx8.html#a34f18b2345a8fd8d96bbe1a9825c1f21":[0,8,0,0,16],
-"namespacegridfire_1_1approx8.html#a3a9861a77093effdfc061743eb13fcdb":[0,8,0,0,15],
-"namespacegridfire_1_1approx8.html#a51d139de74680c8437d20a3fa622200c":[0,8,0,0,11],
-"namespacegridfire_1_1approx8.html#a593cd66c1eadae4da233ae73b4aad4a3":[0,8,0,0,14],
-"namespacegridfire_1_1approx8.html#a62c2f567dc1ada3816843c8586aad0dc":[0,8,0,0,22],
-"namespacegridfire_1_1approx8.html#a70eb18e9706ac28a308dcb4fcec7421f":[0,8,0,0,8],
-"namespacegridfire_1_1approx8.html#a7387008e672ea12d277e2194745a4c93":[0,8,0,0,21],
-"namespacegridfire_1_1approx8.html#a890ad24c2cdb15fb76a3ff8a7b8d77db":[0,8,0,0,10],
-"namespacegridfire_1_1approx8.html#a8c30b7e6099c5fc2aa94f9c68fd075dc":[0,8,0,0,9],
-"namespacegridfire_1_1approx8.html#a9a90b83dd4aa2dcc928bd14f4678dcef":[0,8,0,0,17],
-"namespacegridfire_1_1approx8.html#aa04f907d4ef6a1b6b2a9a28d4bb53882":[0,8,0,0,6],
-"namespacegridfire_1_1approx8.html#aaa49cb0c9ad4b0b9dd0f9b5e192ca12a":[0,8,0,0,5],
-"namespacegridfire_1_1approx8.html#aafd24448743672021dd4507316060817":[0,8,0,0,25],
-"namespacegridfire_1_1approx8.html#ac309c160c806208bf01bebeb29c23896":[0,8,0,0,18],
-"namespacegridfire_1_1approx8.html#acdbb3ee2ef22bfd9c836324285d0da98":[0,8,0,0,19],
-"namespacegridfire_1_1approx8.html#ad7a6f894fa4bdeebb4cae0eba3b2c210":[0,8,0,0,20],
-"namespacegridfire_1_1approx8.html#aed8175751b4920a53922f87f8c0e63c4":[0,8,0,0,24],
-"namespacegridfire_1_1approx8.html#af7d9b901dbb3c88c151d927912d5121f":[0,8,0,0,7],
-"namespacegridfire_1_1exceptions.html":[0,8,0,1],
-"namespacegridfire_1_1expectations.html":[0,8,0,2],
-"namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87c":[0,8,0,2,3],
-"namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca36fc6065a3e970bc3e6b2e59da52bf2a":[0,8,0,2,3,0],
-"namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca4d855a061b3066dc14a3b12ed26b5456":[0,8,0,2,3,2],
-"namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87cacb4ae3b37047fb4b2c0d16f8bf84f076":[0,8,0,2,3,1],
-"namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7":[0,8,0,2,4],
-"namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7a109aa03c8823fcc0ab193b7e48664cbf":[0,8,0,2,4,0],
-"namespacegridfire_1_1io.html":[0,8,0,3],
-"namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352":[0,8,0,3,3],
-"namespacegridfire_1_1partition.html":[0,8,0,4],
-"namespacegridfire_1_1partition.html#a1e08a3c20c55bc6fa4a4ecdf7ea57b8f":[0,8,0,4,7],
-"namespacegridfire_1_1partition.html#a84de6308486d35ce8bc1a9dea52dfa4a":[0,8,0,4,8],
-"namespacegridfire_1_1partition.html#a97237521bc760f7521346f8db472dc8e":[0,8,0,4,6],
-"namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728c":[0,8,0,4,5],
-"namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728ca4ca5b5dcd7343b06b860f05f3bc454b1":[0,8,0,4,5,0],
-"namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335":[0,8,0,4,5,1],
-"namespacegridfire_1_1partition_1_1record.html":[0,8,0,4,0],
-"namespacegridfire_1_1reaclib.html":[0,8,0,5],
-"namespacegridfire_1_1reaclib.html#a02ff11b88be94392151873e06a30b276":[0,8,0,5,2],
-"namespacegridfire_1_1reaclib.html#a5dba5efc372d2a9e9e846dfd6563f3c0":[0,8,0,5,5],
-"namespacegridfire_1_1reaclib.html#a6bb94d5adc7bb9db5a67f770f7453e63":[0,8,0,5,3],
-"namespacegridfire_1_1reaclib.html#a91c7971c9d0a2971b9a6fa4d841c761d":[0,8,0,5,1],
-"namespacegridfire_1_1reaclib.html#af6ff0dfe7ffe34c73ba9acbab5ef8a66":[0,8,0,5,6],
-"namespacegridfire_1_1reaclib.html#afc0deac6cbef076e8884e66fd3ab66e0":[0,8,0,5,4],
-"namespacegridfire_1_1reaction.html":[0,8,0,6],
-"namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31":[0,8,0,6,4],
-"namespacegridfire_1_1reaction.html#abfcfafc0cda0c3ed56930a12e7ead67f":[0,8,0,6,6],
-"namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1":[0,8,0,6,5],
-"namespacegridfire_1_1screening.html":[0,8,0,7],
-"namespacegridfire_1_1screening.html#a6ca8556d27ac373e176f5b23437c416e":[0,8,0,7,5],
-"namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25":[0,8,0,7,4],
-"namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8":[0,8,0,7,4,1],
-"namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71":[0,8,0,7,4,0],
-"namespacegridfire_1_1screening.html#ae7dd1a7ccb7bf3c05084094ab008d8a3":[0,8,0,7,3],
-"namespacegridfire_1_1solver.html":[0,8,0,8],
-"namespacegridfire_1_1solver.html#a8118d08bc25e439754b43a3f5ecc1db3":[0,8,0,8,2],
-"namespacegridfire_1_1utils.html":[0,8,0,9],
-"namespacegridfire_1_1utils.html#af56693a70d9e2b40c8ae2c3bcd4b26c8":[0,8,0,9,0],
-"namespacemembers.html":[0,9,0],
-"namespacemembers_enum.html":[0,9,4],
-"namespacemembers_eval.html":[0,9,5],
-"namespacemembers_func.html":[0,9,1],
-"namespacemembers_type.html":[0,9,3],
-"namespacemembers_vars.html":[0,9,2],
-"namespaces.html":[0,8],
-"namespacestd.html":[0,8,1],
-"network_8cpp.html":[3,0,1,1,7],
-"network_8cpp_source.html":[3,0,1,1,7],
-"network_8h.html":[3,0,1,0,0,9],
-"network_8h_source.html":[3,0,1,0,0,9],
-"network__file_8cpp.html":[3,0,1,1,1,0],
-"network__file_8cpp_source.html":[3,0,1,1,1,0],
-"network__file_8h.html":[3,0,1,0,0,3,1],
-"network__file_8h_source.html":[3,0,1,0,0,3,1],
+"io_2bindings_8cpp.html":[4,0,1,2,3,1],
+"io_2bindings_8cpp.html#a7f552627cbe94906e0ee98b121e77862":[4,0,1,2,3,1,0],
+"io_2bindings_8cpp_source.html":[4,0,1,2,3,1],
+"io_2bindings_8h.html":[4,0,1,2,3,2],
+"io_2bindings_8h.html#a1d91b8298302b9f5401bf06c22651df4":[4,0,1,2,3,2,0],
+"io_2bindings_8h_source.html":[4,0,1,2,3,2],
+"io_8h.html":[4,0,1,0,0,3,0],
+"io_8h_source.html":[4,0,1,0,0,3,0],
+"logging_8cpp.html":[4,0,1,1,6,0],
+"logging_8cpp_source.html":[4,0,1,1,6,0],
+"logging_8h.html":[4,0,1,0,0,8,0],
+"logging_8h_source.html":[4,0,1,0,0,8,0],
+"md_docs_2static_2usage.html":[0],
+"md_docs_2static_2usage.html#autotoc_md25":[0,8],
+"md_docs_2static_2usage.html#autotoc_md26":[0,8,0],
+"md_docs_2static_2usage.html#autotoc_md27":[0,8,1],
+"md_docs_2static_2usage.html#autotoc_md29":[0,9],
+"md_docs_2static_2usage.html#autotoc_md31":[0,10],
+"md_docs_2static_2usage.html#autotoc_md33":[0,11],
+"md_docs_2static_2usage.html#autotoc_md35":[0,12],
+"namespacegridfire.html":[1,0,0],
+"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57":[1,0,0,34],
+"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a100e3bf0197221c19b222badf42aa964":[1,0,0,34,4],
+"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a264572d66aed5373d19dc80c7cde1f46":[1,0,0,34,2],
+"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a3fc719e07f9f63e7f11a3d4fb74b476f":[1,0,0,34,3],
+"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a5105376c2b90747e00bed5bf2953dd56":[1,0,0,34,5],
+"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a928d0f1285ee7d36c1c2fa1b1b7a164c":[1,0,0,34,1],
+"namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75":[1,0,0,34,0],
+"namespacegridfire.html#a02be158966bf82a91b159b7a962c3fa5":[1,0,0,48],
+"namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc":[1,0,0,29],
+"namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6":[1,0,0,30],
+"namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37":[1,0,0,35],
+"namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea":[1,0,0,35,0],
+"namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182":[1,0,0,35,1],
+"namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2":[1,0,0,35,2],
+"namespacegridfire.html#a4e9cabad30b57d636c2f0d73d8cc6bb4":[1,0,0,44],
+"namespacegridfire.html#a745c6568723947f8e1ff874c9d3f4733":[1,0,0,37],
+"namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d":[1,0,0,39],
+"namespacegridfire.html#a898dfe22579e649935645cbd6f073178":[1,0,0,33],
+"namespacegridfire.html#a8b245f261cd8d1711ae8d593b054cf98":[1,0,0,43],
+"namespacegridfire.html#a8b632637f62614f509cde0e404a79054":[1,0,0,49],
+"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154":[1,0,0,36],
+"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931":[1,0,0,36,5],
+"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287":[1,0,0,36,2],
+"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a":[1,0,0,36,0],
+"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45":[1,0,0,36,1],
+"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a":[1,0,0,36,4],
+"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e":[1,0,0,36,6],
+"namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f":[1,0,0,36,3],
+"namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2":[1,0,0,40],
+"namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06":[1,0,0,45],
+"namespacegridfire.html#aa86f08712565f278adacc7cd2361eb31":[1,0,0,31],
+"namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f":[1,0,0,42],
+"namespacegridfire.html#ad838ce3fb6cc02c3fd90b924a0dd91b1":[1,0,0,32],
+"namespacegridfire.html#ada3c137c014ecd8d06200fea2d1a9f50":[1,0,0,46],
+"namespacegridfire.html#ae01b1738df1921db565bcbd68dd6cf64":[1,0,0,47],
+"namespacegridfire.html#aedddb89e400a6111f69bfe0c3fd4214e":[1,0,0,38],
+"namespacegridfire.html#aefc63ddbfe97dcb4178c94dfd1c4b256":[1,0,0,41],
+"namespacegridfire_1_1approx8.html":[1,0,0,0],
+"namespacegridfire_1_1approx8.html#a12cb71ba6ed03750af9e7659464197ea":[1,0,0,0,13],
+"namespacegridfire_1_1approx8.html#a16739298c01e56967ce784a9a957439f":[1,0,0,0,23],
+"namespacegridfire_1_1approx8.html#a20f9c48e60a5abf0b6868d1d05080222":[1,0,0,0,12],
+"namespacegridfire_1_1approx8.html#a2715e1a6421717991814892046b896e3":[1,0,0,0,26],
+"namespacegridfire_1_1approx8.html#a275aecf94e3145c2ff3d1756deda54ce":[1,0,0,0,4],
+"namespacegridfire_1_1approx8.html#a34f18b2345a8fd8d96bbe1a9825c1f21":[1,0,0,0,16],
+"namespacegridfire_1_1approx8.html#a3a9861a77093effdfc061743eb13fcdb":[1,0,0,0,15],
+"namespacegridfire_1_1approx8.html#a51d139de74680c8437d20a3fa622200c":[1,0,0,0,11],
+"namespacegridfire_1_1approx8.html#a593cd66c1eadae4da233ae73b4aad4a3":[1,0,0,0,14],
+"namespacegridfire_1_1approx8.html#a62c2f567dc1ada3816843c8586aad0dc":[1,0,0,0,22],
+"namespacegridfire_1_1approx8.html#a70eb18e9706ac28a308dcb4fcec7421f":[1,0,0,0,8],
+"namespacegridfire_1_1approx8.html#a7387008e672ea12d277e2194745a4c93":[1,0,0,0,21],
+"namespacegridfire_1_1approx8.html#a890ad24c2cdb15fb76a3ff8a7b8d77db":[1,0,0,0,10],
+"namespacegridfire_1_1approx8.html#a8c30b7e6099c5fc2aa94f9c68fd075dc":[1,0,0,0,9],
+"namespacegridfire_1_1approx8.html#a9a90b83dd4aa2dcc928bd14f4678dcef":[1,0,0,0,17],
+"namespacegridfire_1_1approx8.html#aa04f907d4ef6a1b6b2a9a28d4bb53882":[1,0,0,0,6],
+"namespacegridfire_1_1approx8.html#aaa49cb0c9ad4b0b9dd0f9b5e192ca12a":[1,0,0,0,5],
+"namespacegridfire_1_1approx8.html#aafd24448743672021dd4507316060817":[1,0,0,0,25],
+"namespacegridfire_1_1approx8.html#ac309c160c806208bf01bebeb29c23896":[1,0,0,0,18],
+"namespacegridfire_1_1approx8.html#acdbb3ee2ef22bfd9c836324285d0da98":[1,0,0,0,19],
+"namespacegridfire_1_1approx8.html#ad7a6f894fa4bdeebb4cae0eba3b2c210":[1,0,0,0,20],
+"namespacegridfire_1_1approx8.html#aed8175751b4920a53922f87f8c0e63c4":[1,0,0,0,24],
+"namespacegridfire_1_1approx8.html#af7d9b901dbb3c88c151d927912d5121f":[1,0,0,0,7],
+"namespacegridfire_1_1exceptions.html":[1,0,0,1],
+"namespacegridfire_1_1expectations.html":[1,0,0,2],
+"namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87c":[1,0,0,2,3],
+"namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca36fc6065a3e970bc3e6b2e59da52bf2a":[1,0,0,2,3,0],
+"namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca4d855a061b3066dc14a3b12ed26b5456":[1,0,0,2,3,2],
+"namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87cacb4ae3b37047fb4b2c0d16f8bf84f076":[1,0,0,2,3,1],
+"namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7":[1,0,0,2,4],
+"namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7a109aa03c8823fcc0ab193b7e48664cbf":[1,0,0,2,4,0],
+"namespacegridfire_1_1io.html":[1,0,0,3],
+"namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352":[1,0,0,3,3],
+"namespacegridfire_1_1partition.html":[1,0,0,4],
+"namespacegridfire_1_1partition.html#a1e08a3c20c55bc6fa4a4ecdf7ea57b8f":[1,0,0,4,7],
+"namespacegridfire_1_1partition.html#a84de6308486d35ce8bc1a9dea52dfa4a":[1,0,0,4,8],
+"namespacegridfire_1_1partition.html#a97237521bc760f7521346f8db472dc8e":[1,0,0,4,6],
+"namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728c":[1,0,0,4,5],
+"namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728ca4ca5b5dcd7343b06b860f05f3bc454b1":[1,0,0,4,5,0],
+"namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335":[1,0,0,4,5,1],
+"namespacegridfire_1_1partition_1_1record.html":[1,0,0,4,0],
+"namespacegridfire_1_1reaclib.html":[1,0,0,5],
+"namespacegridfire_1_1reaclib.html#a02ff11b88be94392151873e06a30b276":[1,0,0,5,2],
+"namespacegridfire_1_1reaclib.html#a5dba5efc372d2a9e9e846dfd6563f3c0":[1,0,0,5,5],
+"namespacegridfire_1_1reaclib.html#a6bb94d5adc7bb9db5a67f770f7453e63":[1,0,0,5,3],
+"namespacegridfire_1_1reaclib.html#a91c7971c9d0a2971b9a6fa4d841c761d":[1,0,0,5,1],
+"namespacegridfire_1_1reaclib.html#af6ff0dfe7ffe34c73ba9acbab5ef8a66":[1,0,0,5,6],
+"namespacegridfire_1_1reaclib.html#afc0deac6cbef076e8884e66fd3ab66e0":[1,0,0,5,4],
+"namespacegridfire_1_1reaction.html":[1,0,0,6],
+"namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31":[1,0,0,6,4],
+"namespacegridfire_1_1reaction.html#abfcfafc0cda0c3ed56930a12e7ead67f":[1,0,0,6,6],
+"namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1":[1,0,0,6,5],
+"namespacegridfire_1_1screening.html":[1,0,0,7],
+"namespacegridfire_1_1screening.html#a6ca8556d27ac373e176f5b23437c416e":[1,0,0,7,5],
+"namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25":[1,0,0,7,4],
+"namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8":[1,0,0,7,4,1],
+"namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71":[1,0,0,7,4,0],
+"namespacegridfire_1_1screening.html#ae7dd1a7ccb7bf3c05084094ab008d8a3":[1,0,0,7,3],
+"namespacegridfire_1_1solver.html":[1,0,0,8],
+"namespacegridfire_1_1solver.html#a8118d08bc25e439754b43a3f5ecc1db3":[1,0,0,8,2],
+"namespacegridfire_1_1utils.html":[1,0,0,9],
+"namespacegridfire_1_1utils.html#af56693a70d9e2b40c8ae2c3bcd4b26c8":[1,0,0,9,0],
+"namespacemembers.html":[1,1,0],
+"namespacemembers_enum.html":[1,1,4],
+"namespacemembers_eval.html":[1,1,5],
+"namespacemembers_func.html":[1,1,1],
+"namespacemembers_type.html":[1,1,3],
+"namespacemembers_vars.html":[1,1,2],
+"namespaces.html":[1,0],
+"namespacestd.html":[1,0,1],
+"network_8cpp.html":[4,0,1,1,7],
+"network_8cpp_source.html":[4,0,1,1,7],
+"network_8h.html":[4,0,1,0,0,9],
+"network_8h_source.html":[4,0,1,0,0,9],
+"network__file_8cpp.html":[4,0,1,1,1,0],
+"network__file_8cpp_source.html":[4,0,1,1,1,0],
+"network__file_8h.html":[4,0,1,0,0,3,1],
+"network__file_8h_source.html":[4,0,1,0,0,3,1],
"pages.html":[],
-"partition_2bindings_8cpp.html":[3,0,1,2,4,1],
-"partition_2bindings_8cpp.html#a2806baaec82e0e6d66b80348584e08fd":[3,0,1,2,4,1,2],
-"partition_2bindings_8cpp.html#a4c0db94b56a3b02482ac4fd654680cca":[3,0,1,2,4,1,3],
-"partition_2bindings_8cpp.html#a4e56b30b36165067cf413787a55b9ecb":[3,0,1,2,4,1,4],
-"partition_2bindings_8cpp.html#ac36d0a5e8cb0122888fd218a143c7630":[3,0,1,2,4,1,1],
-"partition_2bindings_8cpp.html#ae405682b0e35624397583048f4d40f75":[3,0,1,2,4,1,5],
-"partition_2bindings_8cpp.html#afded1a99d32cbf8745a42e0a81891e18":[3,0,1,2,4,1,0],
-"partition_2bindings_8cpp_source.html":[3,0,1,2,4,1],
-"partition_2bindings_8h.html":[3,0,1,2,4,2],
-"partition_2bindings_8h.html#a2806baaec82e0e6d66b80348584e08fd":[3,0,1,2,4,2,2],
-"partition_2bindings_8h.html#a4c0db94b56a3b02482ac4fd654680cca":[3,0,1,2,4,2,3],
-"partition_2bindings_8h.html#a4e56b30b36165067cf413787a55b9ecb":[3,0,1,2,4,2,4],
-"partition_2bindings_8h.html#ac36d0a5e8cb0122888fd218a143c7630":[3,0,1,2,4,2,1],
-"partition_2bindings_8h.html#ae405682b0e35624397583048f4d40f75":[3,0,1,2,4,2,5],
-"partition_2bindings_8h.html#afded1a99d32cbf8745a42e0a81891e18":[3,0,1,2,4,2,0],
-"partition_2bindings_8h_source.html":[3,0,1,2,4,2],
-"partition_8h.html":[3,0,1,0,0,4,1],
-"partition_8h_source.html":[3,0,1,0,0,4,1],
-"partition__abstract_8h.html":[3,0,1,0,0,4,2],
-"partition__abstract_8h_source.html":[3,0,1,0,0,4,2],
-"partition__composite_8cpp.html":[3,0,1,1,2,0,0],
-"partition__composite_8cpp_source.html":[3,0,1,1,2,0,0],
-"partition__composite_8h.html":[3,0,1,0,0,4,0,0],
-"partition__composite_8h_source.html":[3,0,1,0,0,4,0,0],
-"partition__ground_8cpp.html":[3,0,1,1,2,1],
-"partition__ground_8cpp_source.html":[3,0,1,1,2,1],
-"partition__ground_8h.html":[3,0,1,0,0,4,3],
-"partition__ground_8h_source.html":[3,0,1,0,0,4,3],
-"partition__rauscher__thielemann_8cpp.html":[3,0,1,1,2,2],
-"partition__rauscher__thielemann_8cpp_source.html":[3,0,1,1,2,2],
-"partition__rauscher__thielemann_8h.html":[3,0,1,0,0,4,4],
-"partition__rauscher__thielemann_8h_source.html":[3,0,1,0,0,4,4],
-"partition__types_8h.html":[3,0,1,0,0,4,5],
-"partition__types_8h_source.html":[3,0,1,0,0,4,5],
-"priming_8cpp.html":[3,0,1,1,0,0,1],
-"priming_8cpp_source.html":[3,0,1,1,0,0,1],
-"priming_8h.html":[3,0,1,0,0,0,0,2],
-"priming_8h_source.html":[3,0,1,0,0,0,0,2],
-"py__engine_8cpp.html":[3,0,1,2,0,0,0],
-"py__engine_8cpp_source.html":[3,0,1,2,0,0,0],
-"py__engine_8h.html":[3,0,1,2,0,0,1],
-"py__engine_8h_source.html":[3,0,1,2,0,0,1],
-"py__io_8cpp.html":[3,0,1,2,3,0,0],
-"py__io_8cpp_source.html":[3,0,1,2,3,0,0],
-"py__io_8h.html":[3,0,1,2,3,0,1],
-"py__io_8h_source.html":[3,0,1,2,3,0,1],
-"py__partition_8cpp.html":[3,0,1,2,4,0,0],
-"py__partition_8cpp_source.html":[3,0,1,2,4,0,0],
-"py__partition_8h.html":[3,0,1,2,4,0,1],
-"py__partition_8h_source.html":[3,0,1,2,4,0,1],
-"py__screening_8cpp.html":[3,0,1,2,6,0,0]
+"partition_2bindings_8cpp.html":[4,0,1,2,4,1],
+"partition_2bindings_8cpp.html#a2806baaec82e0e6d66b80348584e08fd":[4,0,1,2,4,1,2],
+"partition_2bindings_8cpp.html#a4c0db94b56a3b02482ac4fd654680cca":[4,0,1,2,4,1,3],
+"partition_2bindings_8cpp.html#a4e56b30b36165067cf413787a55b9ecb":[4,0,1,2,4,1,4],
+"partition_2bindings_8cpp.html#ac36d0a5e8cb0122888fd218a143c7630":[4,0,1,2,4,1,1],
+"partition_2bindings_8cpp.html#ae405682b0e35624397583048f4d40f75":[4,0,1,2,4,1,5],
+"partition_2bindings_8cpp.html#afded1a99d32cbf8745a42e0a81891e18":[4,0,1,2,4,1,0],
+"partition_2bindings_8cpp_source.html":[4,0,1,2,4,1],
+"partition_2bindings_8h.html":[4,0,1,2,4,2],
+"partition_2bindings_8h.html#a2806baaec82e0e6d66b80348584e08fd":[4,0,1,2,4,2,2],
+"partition_2bindings_8h.html#a4c0db94b56a3b02482ac4fd654680cca":[4,0,1,2,4,2,3],
+"partition_2bindings_8h.html#a4e56b30b36165067cf413787a55b9ecb":[4,0,1,2,4,2,4],
+"partition_2bindings_8h.html#ac36d0a5e8cb0122888fd218a143c7630":[4,0,1,2,4,2,1],
+"partition_2bindings_8h.html#ae405682b0e35624397583048f4d40f75":[4,0,1,2,4,2,5],
+"partition_2bindings_8h.html#afded1a99d32cbf8745a42e0a81891e18":[4,0,1,2,4,2,0],
+"partition_2bindings_8h_source.html":[4,0,1,2,4,2],
+"partition_8h.html":[4,0,1,0,0,4,1],
+"partition_8h_source.html":[4,0,1,0,0,4,1],
+"partition__abstract_8h.html":[4,0,1,0,0,4,2],
+"partition__abstract_8h_source.html":[4,0,1,0,0,4,2],
+"partition__composite_8cpp.html":[4,0,1,1,2,0,0],
+"partition__composite_8cpp_source.html":[4,0,1,1,2,0,0],
+"partition__composite_8h.html":[4,0,1,0,0,4,0,0],
+"partition__composite_8h_source.html":[4,0,1,0,0,4,0,0],
+"partition__ground_8cpp.html":[4,0,1,1,2,1],
+"partition__ground_8cpp_source.html":[4,0,1,1,2,1],
+"partition__ground_8h.html":[4,0,1,0,0,4,3],
+"partition__ground_8h_source.html":[4,0,1,0,0,4,3],
+"partition__rauscher__thielemann_8cpp.html":[4,0,1,1,2,2],
+"partition__rauscher__thielemann_8cpp_source.html":[4,0,1,1,2,2],
+"partition__rauscher__thielemann_8h.html":[4,0,1,0,0,4,4],
+"partition__rauscher__thielemann_8h_source.html":[4,0,1,0,0,4,4],
+"partition__types_8h.html":[4,0,1,0,0,4,5],
+"partition__types_8h_source.html":[4,0,1,0,0,4,5],
+"priming_8cpp.html":[4,0,1,1,0,0,1],
+"priming_8cpp_source.html":[4,0,1,1,0,0,1],
+"priming_8h.html":[4,0,1,0,0,0,0,2],
+"priming_8h_source.html":[4,0,1,0,0,0,0,2],
+"py__engine_8cpp.html":[4,0,1,2,0,0,0],
+"py__engine_8cpp_source.html":[4,0,1,2,0,0,0],
+"py__engine_8h.html":[4,0,1,2,0,0,1],
+"py__engine_8h_source.html":[4,0,1,2,0,0,1],
+"py__io_8cpp.html":[4,0,1,2,3,0,0],
+"py__io_8cpp_source.html":[4,0,1,2,3,0,0],
+"py__io_8h.html":[4,0,1,2,3,0,1],
+"py__io_8h_source.html":[4,0,1,2,3,0,1]
};
diff --git a/docs/html/navtreeindex6.js b/docs/html/navtreeindex6.js
index eda4d31c..c349e151 100644
--- a/docs/html/navtreeindex6.js
+++ b/docs/html/navtreeindex6.js
@@ -1,253 +1,253 @@
var NAVTREEINDEX6 =
{
-"py__screening_8cpp.html#a4c5a7b887f31226ce0b82409f819833b":[3,0,1,2,6,0,0,0],
-"py__screening_8cpp_source.html":[3,0,1,2,6,0,0],
-"py__screening_8h.html":[3,0,1,2,6,0,1],
-"py__screening_8h_source.html":[3,0,1,2,6,0,1],
-"py__solver_8cpp.html":[3,0,1,2,7,0,0],
-"py__solver_8cpp_source.html":[3,0,1,2,7,0,0],
-"py__solver_8h.html":[3,0,1,2,7,0,1],
-"py__solver_8h_source.html":[3,0,1,2,7,0,1],
-"rauscher__thielemann__partition__data_8h.html":[3,0,1,0,0,4,6],
-"rauscher__thielemann__partition__data_8h.html#a5240736f3bdb43cf2cd63464c5835df1":[3,0,1,0,0,4,6,1],
-"rauscher__thielemann__partition__data_8h.html#a7b9a54e9c58848fe3205479acd770ffd":[3,0,1,0,0,4,6,0],
-"rauscher__thielemann__partition__data_8h_source.html":[3,0,1,0,0,4,6],
-"rauscher__thielemann__partition__data__record_8h.html":[3,0,1,0,0,4,7],
-"rauscher__thielemann__partition__data__record_8h_source.html":[3,0,1,0,0,4,7],
-"reaclib_8cpp.html":[3,0,1,1,3,0],
-"reaclib_8cpp.html#a2c6902cf3e699a1a65e871efa878a6ab":[3,0,1,1,3,0,5],
-"reaclib_8cpp_source.html":[3,0,1,1,3,0],
-"reaclib_8h.html":[3,0,1,0,0,5,0],
-"reaclib_8h_source.html":[3,0,1,0,0,5,0],
-"reaction_2bindings_8cpp.html":[3,0,1,2,5,0],
-"reaction_2bindings_8cpp.html#ae174b115814ec42920a799881cef1efa":[3,0,1,2,5,0,0],
-"reaction_2bindings_8cpp_source.html":[3,0,1,2,5,0],
-"reaction_2bindings_8h.html":[3,0,1,2,5,1],
-"reaction_2bindings_8h.html#a221d509fd54278898e2cbb73663f53d0":[3,0,1,2,5,1,0],
-"reaction_2bindings_8h_source.html":[3,0,1,2,5,1],
-"reaction_8cpp.html":[3,0,1,1,3,1],
-"reaction_8cpp_source.html":[3,0,1,1,3,1],
-"reaction_8h.html":[3,0,1,0,0,5,1],
-"reaction_8h_source.html":[3,0,1,0,0,5,1],
-"reactions__data_8h.html":[3,0,1,0,0,5,2],
-"reactions__data_8h.html#a32dea82d95667c3df395d58fb469ce2a":[3,0,1,0,0,5,2,1],
-"reactions__data_8h.html#aeb44e2b3b67960dfd83ecd7136c7d38b":[3,0,1,0,0,5,2,0],
-"reactions__data_8h_source.html":[3,0,1,0,0,5,2],
-"reporting_8h.html":[3,0,1,0,0,0,1,2],
-"reporting_8h_source.html":[3,0,1,0,0,0,1,2],
-"screening_2bindings_8cpp.html":[3,0,1,2,6,1],
-"screening_2bindings_8cpp.html#a4fcef69d9382bfbc315cb061038627f4":[3,0,1,2,6,1,0],
-"screening_2bindings_8cpp_source.html":[3,0,1,2,6,1],
-"screening_2bindings_8h.html":[3,0,1,2,6,2],
-"screening_2bindings_8h.html#a9e1a938ffee0a1b9d913fa4968865b1b":[3,0,1,2,6,2,0],
-"screening_2bindings_8h_source.html":[3,0,1,2,6,2],
-"screening_8h.html":[3,0,1,0,0,6,0],
-"screening_8h_source.html":[3,0,1,0,0,6,0],
-"screening__abstract_8h.html":[3,0,1,0,0,6,1],
-"screening__abstract_8h_source.html":[3,0,1,0,0,6,1],
-"screening__bare_8cpp.html":[3,0,1,1,4,0],
-"screening__bare_8cpp_source.html":[3,0,1,1,4,0],
-"screening__bare_8h.html":[3,0,1,0,0,6,2],
-"screening__bare_8h_source.html":[3,0,1,0,0,6,2],
-"screening__types_8cpp.html":[3,0,1,1,4,1],
-"screening__types_8cpp_source.html":[3,0,1,1,4,1],
-"screening__types_8h.html":[3,0,1,0,0,6,3],
-"screening__types_8h_source.html":[3,0,1,0,0,6,3],
-"screening__weak_8cpp.html":[3,0,1,1,4,2],
-"screening__weak_8cpp_source.html":[3,0,1,1,4,2],
-"screening__weak_8h.html":[3,0,1,0,0,6,4],
-"screening__weak_8h_source.html":[3,0,1,0,0,6,4],
-"solver_2bindings_8cpp.html":[3,0,1,2,7,1],
-"solver_2bindings_8cpp.html#a8b1a9e2faca389d99c0b5feaa4262630":[3,0,1,2,7,1,0],
-"solver_2bindings_8cpp_source.html":[3,0,1,2,7,1],
-"solver_2bindings_8h.html":[3,0,1,2,7,2],
-"solver_2bindings_8h.html#a426b11f75261b240dc9964f6774403bf":[3,0,1,2,7,2,0],
-"solver_2bindings_8h_source.html":[3,0,1,2,7,2],
-"solver_8cpp.html":[3,0,1,1,5,0],
-"solver_8cpp_source.html":[3,0,1,1,5,0],
-"solver_8h.html":[3,0,1,0,0,7,0],
-"solver_8h_source.html":[3,0,1,0,0,7,0],
-"struct_r_h_s_functor.html":[2,0,10],
-"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html":[0,8,0,10,0],
-"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html":[2,0,0,9,0],
-"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a3bb21f20df8115d37108cf3c3be3bc6f":[0,8,0,10,0,1],
-"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a3bb21f20df8115d37108cf3c3be3bc6f":[2,0,0,9,0,1],
-"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a6c2e9087f6c8af5d89a5f0de7bd4a5b4":[0,8,0,10,0,0],
-"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a6c2e9087f6c8af5d89a5f0de7bd4a5b4":[2,0,0,9,0,0],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html":[0,8,0,16,2],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html":[2,0,0,15,2],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275":[0,8,0,16,2,2],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275":[2,0,0,15,2,2],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3ce63aa3ad88568f4eb0d3ca2414209f":[0,8,0,16,2,1],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3ce63aa3ad88568f4eb0d3ca2414209f":[2,0,0,15,2,1],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3e2e67e532970738d20491ea56b170f3":[0,8,0,16,2,0],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3e2e67e532970738d20491ea56b170f3":[2,0,0,15,2,0],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a510e380116e2e6d9158cf00fedac2666":[0,8,0,16,2,8],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a510e380116e2e6d9158cf00fedac2666":[2,0,0,15,2,8],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6bcfe2230dd54b088180d34389266b07":[0,8,0,16,2,4],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6bcfe2230dd54b088180d34389266b07":[2,0,0,15,2,4],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c":[0,8,0,16,2,5],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c":[2,0,0,15,2,5],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497":[0,8,0,16,2,3],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497":[2,0,0,15,2,3],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a9974f944a2cf5179baabebe09d60cf18":[0,8,0,16,2,7],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a9974f944a2cf5179baabebe09d60cf18":[2,0,0,15,2,7],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e":[0,8,0,16,2,6],
-"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e":[2,0,0,15,2,6],
-"structgridfire_1_1_graph_engine_1_1constants.html":[0,8,0,16,1],
-"structgridfire_1_1_graph_engine_1_1constants.html":[2,0,0,15,1],
-"structgridfire_1_1_graph_engine_1_1constants.html#a29c8ae2b5c1d5fecd25c4fde2b623f7f":[0,8,0,16,1,1],
-"structgridfire_1_1_graph_engine_1_1constants.html#a29c8ae2b5c1d5fecd25c4fde2b623f7f":[2,0,0,15,1,1],
-"structgridfire_1_1_graph_engine_1_1constants.html#a3597bc632a5dd50aaa0044d8c18ca423":[0,8,0,16,1,3],
-"structgridfire_1_1_graph_engine_1_1constants.html#a3597bc632a5dd50aaa0044d8c18ca423":[2,0,0,15,1,3],
-"structgridfire_1_1_graph_engine_1_1constants.html#a5ccc874d6704615e0ce54c14dc67699d":[0,8,0,16,1,2],
-"structgridfire_1_1_graph_engine_1_1constants.html#a5ccc874d6704615e0ce54c14dc67699d":[2,0,0,15,1,2],
-"structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306":[0,8,0,16,1,0],
-"structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306":[2,0,0,15,1,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html":[0,8,0,17,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html":[2,0,0,16,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a0c3bd8d5918e344657227a09cd7e39a5":[0,8,0,17,0,5],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a0c3bd8d5918e344657227a09cd7e39a5":[2,0,0,16,0,5],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5df4f2c27e9eaa781c972a8c9b595787":[0,8,0,17,0,4],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5df4f2c27e9eaa781c972a8c9b595787":[2,0,0,16,0,4],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5eb642e161ffb5500ccc1e412849ee5e":[0,8,0,17,0,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5eb642e161ffb5500ccc1e412849ee5e":[2,0,0,16,0,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a73ca615753553f4a85160bd9f166da5b":[0,8,0,17,0,6],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a73ca615753553f4a85160bd9f166da5b":[2,0,0,16,0,6],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#aaf8b925a169a732c14f4451a33451f51":[0,8,0,17,0,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#aaf8b925a169a732c14f4451a33451f51":[2,0,0,16,0,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac18229250c4c160aada96e19325faa29":[0,8,0,17,0,7],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac18229250c4c160aada96e19325faa29":[2,0,0,16,0,7],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505":[0,8,0,17,0,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505":[2,0,0,16,0,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894":[0,8,0,17,0,0,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894":[2,0,0,16,0,0,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387":[0,8,0,17,0,0,5],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387":[2,0,0,16,0,0,5],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a":[0,8,0,17,0,0,3],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a":[2,0,0,16,0,0,3],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9e720102de6020a01552bc0e8935c566":[0,8,0,17,0,0,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9e720102de6020a01552bc0e8935c566":[2,0,0,16,0,0,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061":[0,8,0,17,0,0,4],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061":[2,0,0,16,0,0,4],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505aafefea58639f78d7c750970bbad28420":[0,8,0,17,0,0,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505aafefea58639f78d7c750970bbad28420":[2,0,0,16,0,0,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505ab1c94ca2fbc3e78fc30069c8d0f01680":[0,8,0,17,0,0,6],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505ab1c94ca2fbc3e78fc30069c8d0f01680":[2,0,0,16,0,0,6],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac55fb580dd4b9763cefe4612555b03f3":[0,8,0,17,0,3],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac55fb580dd4b9763cefe4612555b03f3":[2,0,0,16,0,3],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afb930f4472f4bb713f0b606194762c6f":[0,8,0,17,0,9],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afb930f4472f4bb713f0b606194762c6f":[2,0,0,16,0,9],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77":[0,8,0,17,0,8],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77":[2,0,0,16,0,8],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html":[0,8,0,17,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html":[2,0,0,16,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a0adf1074b5e6ba448cedff7563c450d0":[0,8,0,17,1,5],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a0adf1074b5e6ba448cedff7563c450d0":[2,0,0,16,1,5],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a1aa29df77925443796e1e59c1b7b7a60":[0,8,0,17,1,3],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a1aa29df77925443796e1e59c1b7b7a60":[2,0,0,16,1,3],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3bc901d2d8234d1f61e94d0fe0777f7d":[0,8,0,17,1,12],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3bc901d2d8234d1f61e94d0fe0777f7d":[2,0,0,16,1,12],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3ebf684b36e98da38d8ee6f0be4f91e2":[0,8,0,17,1,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3ebf684b36e98da38d8ee6f0be4f91e2":[2,0,0,16,1,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0":[0,8,0,17,1,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0":[2,0,0,16,1,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c":[0,8,0,17,1,9],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c":[2,0,0,16,1,9],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4eb11e99dc2a7e038d815bf7c6bd0be8":[0,8,0,17,1,8],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4eb11e99dc2a7e038d815bf7c6bd0be8":[2,0,0,16,1,8],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6d13bb5294f5dae7e2eb1d26720f944e":[0,8,0,17,1,7],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6d13bb5294f5dae7e2eb1d26720f944e":[2,0,0,16,1,7],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678":[0,8,0,17,1,10],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678":[2,0,0,16,1,10],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5":[0,8,0,17,1,13],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5":[2,0,0,16,1,13],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc":[0,8,0,17,1,4],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc":[2,0,0,16,1,4],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7353c20a6eac2ac0d9d13791577080d":[0,8,0,17,1,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7353c20a6eac2ac0d9d13791577080d":[2,0,0,16,1,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28":[0,8,0,17,1,6],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28":[2,0,0,16,1,6],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7":[0,8,0,17,1,11],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7":[2,0,0,16,1,11],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html":[0,8,0,17,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html":[2,0,0,16,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06":[0,8,0,17,2,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06":[2,0,0,16,2,1],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e":[0,8,0,17,2,8],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e":[2,0,0,16,2,8],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9":[0,8,0,17,2,6],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9":[2,0,0,16,2,6],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a":[0,8,0,17,2,3],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a":[2,0,0,16,2,3],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88":[0,8,0,17,2,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88":[2,0,0,16,2,2],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681":[0,8,0,17,2,7],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681":[2,0,0,16,2,7],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ab11be6e7afeef1ac9e4314ad8345e0b0":[0,8,0,17,2,4],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ab11be6e7afeef1ac9e4314ad8345e0b0":[2,0,0,16,2,4],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a":[0,8,0,17,2,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a":[2,0,0,16,2,0],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06":[0,8,0,17,2,5],
-"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06":[2,0,0,16,2,5],
-"structgridfire_1_1_net_in.html":[0,8,0,18],
-"structgridfire_1_1_net_in.html":[2,0,0,17],
-"structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577":[0,8,0,18,3],
-"structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577":[2,0,0,17,3],
-"structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1":[0,8,0,18,7],
-"structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1":[2,0,0,17,7],
-"structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1":[0,8,0,18,1],
-"structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1":[2,0,0,17,1],
-"structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65":[0,8,0,18,0],
-"structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65":[2,0,0,17,0],
-"structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a":[0,8,0,18,4],
-"structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a":[2,0,0,17,4],
-"structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be":[0,8,0,18,6],
-"structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be":[2,0,0,17,6],
-"structgridfire_1_1_net_in.html#a6a5e909b46094ffa20da9a3da906e43f":[0,8,0,18,2],
-"structgridfire_1_1_net_in.html#a6a5e909b46094ffa20da9a3da906e43f":[2,0,0,17,2],
-"structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b":[0,8,0,18,5],
-"structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b":[2,0,0,17,5],
-"structgridfire_1_1_net_out.html":[0,8,0,19],
-"structgridfire_1_1_net_out.html":[2,0,0,18],
-"structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a":[0,8,0,19,1],
-"structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a":[2,0,0,18,1],
-"structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6":[0,8,0,19,2],
-"structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6":[2,0,0,18,2],
-"structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6":[0,8,0,19,3],
-"structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6":[2,0,0,18,3],
-"structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b":[0,8,0,19,0],
-"structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b":[2,0,0,18,0],
-"structgridfire_1_1_priming_report.html":[0,8,0,22],
-"structgridfire_1_1_priming_report.html":[2,0,0,21],
-"structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb":[0,8,0,22,2],
-"structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb":[2,0,0,21,2],
-"structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7":[0,8,0,22,1],
-"structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7":[2,0,0,21,1],
-"structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d":[0,8,0,22,3],
-"structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d":[2,0,0,21,3],
-"structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736":[0,8,0,22,0],
-"structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736":[2,0,0,21,0],
-"structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3":[0,8,0,22,4],
-"structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3":[2,0,0,21,4],
-"structgridfire_1_1_q_s_e_cache_config.html":[0,8,0,23],
-"structgridfire_1_1_q_s_e_cache_config.html":[2,0,0,22],
-"structgridfire_1_1_q_s_e_cache_config.html#a31d3e8d1b83109524c94641ce06fa351":[0,8,0,23,2],
-"structgridfire_1_1_q_s_e_cache_config.html#a31d3e8d1b83109524c94641ce06fa351":[2,0,0,22,2],
-"structgridfire_1_1_q_s_e_cache_config.html#a57b7ca68463aa9b78007e5cf35ebf7ce":[0,8,0,23,0],
-"structgridfire_1_1_q_s_e_cache_config.html#a57b7ca68463aa9b78007e5cf35ebf7ce":[2,0,0,22,0],
-"structgridfire_1_1_q_s_e_cache_config.html#af4dca2b24aa364fbbf6e99eb26774f40":[0,8,0,23,1],
-"structgridfire_1_1_q_s_e_cache_config.html#af4dca2b24aa364fbbf6e99eb26774f40":[2,0,0,22,1],
-"structgridfire_1_1_q_s_e_cache_key.html":[0,8,0,24],
-"structgridfire_1_1_q_s_e_cache_key.html":[2,0,0,23],
-"structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7":[0,8,0,24,7],
-"structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7":[2,0,0,23,7],
-"structgridfire_1_1_q_s_e_cache_key.html#a3078528fc69b8e687448d3108a216c03":[0,8,0,24,0],
-"structgridfire_1_1_q_s_e_cache_key.html#a3078528fc69b8e687448d3108a216c03":[2,0,0,23,0],
-"structgridfire_1_1_q_s_e_cache_key.html#a711acccecadd93495fd08c81838be2d8":[0,8,0,24,4],
-"structgridfire_1_1_q_s_e_cache_key.html#a711acccecadd93495fd08c81838be2d8":[2,0,0,23,4],
-"structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d":[0,8,0,24,2],
-"structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d":[2,0,0,23,2],
-"structgridfire_1_1_q_s_e_cache_key.html#ab860b40d4ccb3c16a962d96bc767ff05":[0,8,0,24,5],
-"structgridfire_1_1_q_s_e_cache_key.html#ab860b40d4ccb3c16a962d96bc767ff05":[2,0,0,23,5]
+"py__partition_8cpp.html":[4,0,1,2,4,0,0],
+"py__partition_8cpp_source.html":[4,0,1,2,4,0,0],
+"py__partition_8h.html":[4,0,1,2,4,0,1],
+"py__partition_8h_source.html":[4,0,1,2,4,0,1],
+"py__screening_8cpp.html":[4,0,1,2,6,0,0],
+"py__screening_8cpp.html#a4c5a7b887f31226ce0b82409f819833b":[4,0,1,2,6,0,0,0],
+"py__screening_8cpp_source.html":[4,0,1,2,6,0,0],
+"py__screening_8h.html":[4,0,1,2,6,0,1],
+"py__screening_8h_source.html":[4,0,1,2,6,0,1],
+"py__solver_8cpp.html":[4,0,1,2,7,0,0],
+"py__solver_8cpp_source.html":[4,0,1,2,7,0,0],
+"py__solver_8h.html":[4,0,1,2,7,0,1],
+"py__solver_8h_source.html":[4,0,1,2,7,0,1],
+"rauscher__thielemann__partition__data_8h.html":[4,0,1,0,0,4,6],
+"rauscher__thielemann__partition__data_8h.html#a5240736f3bdb43cf2cd63464c5835df1":[4,0,1,0,0,4,6,1],
+"rauscher__thielemann__partition__data_8h.html#a7b9a54e9c58848fe3205479acd770ffd":[4,0,1,0,0,4,6,0],
+"rauscher__thielemann__partition__data_8h_source.html":[4,0,1,0,0,4,6],
+"rauscher__thielemann__partition__data__record_8h.html":[4,0,1,0,0,4,7],
+"rauscher__thielemann__partition__data__record_8h_source.html":[4,0,1,0,0,4,7],
+"reaclib_8cpp.html":[4,0,1,1,3,0],
+"reaclib_8cpp.html#a2c6902cf3e699a1a65e871efa878a6ab":[4,0,1,1,3,0,5],
+"reaclib_8cpp_source.html":[4,0,1,1,3,0],
+"reaclib_8h.html":[4,0,1,0,0,5,0],
+"reaclib_8h_source.html":[4,0,1,0,0,5,0],
+"reaction_2bindings_8cpp.html":[4,0,1,2,5,0],
+"reaction_2bindings_8cpp.html#ae174b115814ec42920a799881cef1efa":[4,0,1,2,5,0,0],
+"reaction_2bindings_8cpp_source.html":[4,0,1,2,5,0],
+"reaction_2bindings_8h.html":[4,0,1,2,5,1],
+"reaction_2bindings_8h.html#a221d509fd54278898e2cbb73663f53d0":[4,0,1,2,5,1,0],
+"reaction_2bindings_8h_source.html":[4,0,1,2,5,1],
+"reaction_8cpp.html":[4,0,1,1,3,1],
+"reaction_8cpp_source.html":[4,0,1,1,3,1],
+"reaction_8h.html":[4,0,1,0,0,5,1],
+"reaction_8h_source.html":[4,0,1,0,0,5,1],
+"reactions__data_8h.html":[4,0,1,0,0,5,2],
+"reactions__data_8h.html#a32dea82d95667c3df395d58fb469ce2a":[4,0,1,0,0,5,2,1],
+"reactions__data_8h.html#aeb44e2b3b67960dfd83ecd7136c7d38b":[4,0,1,0,0,5,2,0],
+"reactions__data_8h_source.html":[4,0,1,0,0,5,2],
+"reporting_8h.html":[4,0,1,0,0,0,1,2],
+"reporting_8h_source.html":[4,0,1,0,0,0,1,2],
+"screening_2bindings_8cpp.html":[4,0,1,2,6,1],
+"screening_2bindings_8cpp.html#a4fcef69d9382bfbc315cb061038627f4":[4,0,1,2,6,1,0],
+"screening_2bindings_8cpp_source.html":[4,0,1,2,6,1],
+"screening_2bindings_8h.html":[4,0,1,2,6,2],
+"screening_2bindings_8h.html#a9e1a938ffee0a1b9d913fa4968865b1b":[4,0,1,2,6,2,0],
+"screening_2bindings_8h_source.html":[4,0,1,2,6,2],
+"screening_8h.html":[4,0,1,0,0,6,0],
+"screening_8h_source.html":[4,0,1,0,0,6,0],
+"screening__abstract_8h.html":[4,0,1,0,0,6,1],
+"screening__abstract_8h_source.html":[4,0,1,0,0,6,1],
+"screening__bare_8cpp.html":[4,0,1,1,4,0],
+"screening__bare_8cpp_source.html":[4,0,1,1,4,0],
+"screening__bare_8h.html":[4,0,1,0,0,6,2],
+"screening__bare_8h_source.html":[4,0,1,0,0,6,2],
+"screening__types_8cpp.html":[4,0,1,1,4,1],
+"screening__types_8cpp_source.html":[4,0,1,1,4,1],
+"screening__types_8h.html":[4,0,1,0,0,6,3],
+"screening__types_8h_source.html":[4,0,1,0,0,6,3],
+"screening__weak_8cpp.html":[4,0,1,1,4,2],
+"screening__weak_8cpp_source.html":[4,0,1,1,4,2],
+"screening__weak_8h.html":[4,0,1,0,0,6,4],
+"screening__weak_8h_source.html":[4,0,1,0,0,6,4],
+"solver_2bindings_8cpp.html":[4,0,1,2,7,1],
+"solver_2bindings_8cpp.html#a8b1a9e2faca389d99c0b5feaa4262630":[4,0,1,2,7,1,0],
+"solver_2bindings_8cpp_source.html":[4,0,1,2,7,1],
+"solver_2bindings_8h.html":[4,0,1,2,7,2],
+"solver_2bindings_8h.html#a426b11f75261b240dc9964f6774403bf":[4,0,1,2,7,2,0],
+"solver_2bindings_8h_source.html":[4,0,1,2,7,2],
+"solver_8cpp.html":[4,0,1,1,5,0],
+"solver_8cpp_source.html":[4,0,1,1,5,0],
+"solver_8h.html":[4,0,1,0,0,7,0],
+"solver_8h_source.html":[4,0,1,0,0,7,0],
+"struct_r_h_s_functor.html":[3,0,10],
+"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html":[1,0,0,10,0],
+"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html":[3,0,0,9,0],
+"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a3bb21f20df8115d37108cf3c3be3bc6f":[1,0,0,10,0,1],
+"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a3bb21f20df8115d37108cf3c3be3bc6f":[3,0,0,9,0,1],
+"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a6c2e9087f6c8af5d89a5f0de7bd4a5b4":[1,0,0,10,0,0],
+"structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a6c2e9087f6c8af5d89a5f0de7bd4a5b4":[3,0,0,9,0,0],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html":[1,0,0,16,2],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html":[3,0,0,15,2],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275":[1,0,0,16,2,2],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275":[3,0,0,15,2,2],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3ce63aa3ad88568f4eb0d3ca2414209f":[1,0,0,16,2,1],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3ce63aa3ad88568f4eb0d3ca2414209f":[3,0,0,15,2,1],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3e2e67e532970738d20491ea56b170f3":[1,0,0,16,2,0],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3e2e67e532970738d20491ea56b170f3":[3,0,0,15,2,0],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a510e380116e2e6d9158cf00fedac2666":[1,0,0,16,2,8],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a510e380116e2e6d9158cf00fedac2666":[3,0,0,15,2,8],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6bcfe2230dd54b088180d34389266b07":[1,0,0,16,2,4],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6bcfe2230dd54b088180d34389266b07":[3,0,0,15,2,4],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c":[1,0,0,16,2,5],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c":[3,0,0,15,2,5],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497":[1,0,0,16,2,3],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497":[3,0,0,15,2,3],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a9974f944a2cf5179baabebe09d60cf18":[1,0,0,16,2,7],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a9974f944a2cf5179baabebe09d60cf18":[3,0,0,15,2,7],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e":[1,0,0,16,2,6],
+"structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e":[3,0,0,15,2,6],
+"structgridfire_1_1_graph_engine_1_1constants.html":[1,0,0,16,1],
+"structgridfire_1_1_graph_engine_1_1constants.html":[3,0,0,15,1],
+"structgridfire_1_1_graph_engine_1_1constants.html#a29c8ae2b5c1d5fecd25c4fde2b623f7f":[1,0,0,16,1,1],
+"structgridfire_1_1_graph_engine_1_1constants.html#a29c8ae2b5c1d5fecd25c4fde2b623f7f":[3,0,0,15,1,1],
+"structgridfire_1_1_graph_engine_1_1constants.html#a3597bc632a5dd50aaa0044d8c18ca423":[1,0,0,16,1,3],
+"structgridfire_1_1_graph_engine_1_1constants.html#a3597bc632a5dd50aaa0044d8c18ca423":[3,0,0,15,1,3],
+"structgridfire_1_1_graph_engine_1_1constants.html#a5ccc874d6704615e0ce54c14dc67699d":[1,0,0,16,1,2],
+"structgridfire_1_1_graph_engine_1_1constants.html#a5ccc874d6704615e0ce54c14dc67699d":[3,0,0,15,1,2],
+"structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306":[1,0,0,16,1,0],
+"structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306":[3,0,0,15,1,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html":[1,0,0,17,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html":[3,0,0,16,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a0c3bd8d5918e344657227a09cd7e39a5":[1,0,0,17,0,5],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a0c3bd8d5918e344657227a09cd7e39a5":[3,0,0,16,0,5],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5df4f2c27e9eaa781c972a8c9b595787":[1,0,0,17,0,4],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5df4f2c27e9eaa781c972a8c9b595787":[3,0,0,16,0,4],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5eb642e161ffb5500ccc1e412849ee5e":[1,0,0,17,0,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5eb642e161ffb5500ccc1e412849ee5e":[3,0,0,16,0,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a73ca615753553f4a85160bd9f166da5b":[1,0,0,17,0,6],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a73ca615753553f4a85160bd9f166da5b":[3,0,0,16,0,6],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#aaf8b925a169a732c14f4451a33451f51":[1,0,0,17,0,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#aaf8b925a169a732c14f4451a33451f51":[3,0,0,16,0,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac18229250c4c160aada96e19325faa29":[1,0,0,17,0,7],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac18229250c4c160aada96e19325faa29":[3,0,0,16,0,7],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505":[1,0,0,17,0,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505":[3,0,0,16,0,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894":[1,0,0,17,0,0,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894":[3,0,0,16,0,0,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387":[1,0,0,17,0,0,5],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387":[3,0,0,16,0,0,5],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a":[1,0,0,17,0,0,3],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a":[3,0,0,16,0,0,3],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9e720102de6020a01552bc0e8935c566":[1,0,0,17,0,0,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9e720102de6020a01552bc0e8935c566":[3,0,0,16,0,0,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061":[1,0,0,17,0,0,4],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061":[3,0,0,16,0,0,4],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505aafefea58639f78d7c750970bbad28420":[1,0,0,17,0,0,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505aafefea58639f78d7c750970bbad28420":[3,0,0,16,0,0,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505ab1c94ca2fbc3e78fc30069c8d0f01680":[1,0,0,17,0,0,6],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505ab1c94ca2fbc3e78fc30069c8d0f01680":[3,0,0,16,0,0,6],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac55fb580dd4b9763cefe4612555b03f3":[1,0,0,17,0,3],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac55fb580dd4b9763cefe4612555b03f3":[3,0,0,16,0,3],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afb930f4472f4bb713f0b606194762c6f":[1,0,0,17,0,9],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afb930f4472f4bb713f0b606194762c6f":[3,0,0,16,0,9],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77":[1,0,0,17,0,8],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77":[3,0,0,16,0,8],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html":[1,0,0,17,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html":[3,0,0,16,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a0adf1074b5e6ba448cedff7563c450d0":[1,0,0,17,1,5],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a0adf1074b5e6ba448cedff7563c450d0":[3,0,0,16,1,5],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a1aa29df77925443796e1e59c1b7b7a60":[1,0,0,17,1,3],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a1aa29df77925443796e1e59c1b7b7a60":[3,0,0,16,1,3],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3bc901d2d8234d1f61e94d0fe0777f7d":[1,0,0,17,1,12],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3bc901d2d8234d1f61e94d0fe0777f7d":[3,0,0,16,1,12],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3ebf684b36e98da38d8ee6f0be4f91e2":[1,0,0,17,1,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3ebf684b36e98da38d8ee6f0be4f91e2":[3,0,0,16,1,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0":[1,0,0,17,1,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0":[3,0,0,16,1,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c":[1,0,0,17,1,9],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c":[3,0,0,16,1,9],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4eb11e99dc2a7e038d815bf7c6bd0be8":[1,0,0,17,1,8],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4eb11e99dc2a7e038d815bf7c6bd0be8":[3,0,0,16,1,8],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6d13bb5294f5dae7e2eb1d26720f944e":[1,0,0,17,1,7],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6d13bb5294f5dae7e2eb1d26720f944e":[3,0,0,16,1,7],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678":[1,0,0,17,1,10],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678":[3,0,0,16,1,10],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5":[1,0,0,17,1,13],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5":[3,0,0,16,1,13],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc":[1,0,0,17,1,4],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc":[3,0,0,16,1,4],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7353c20a6eac2ac0d9d13791577080d":[1,0,0,17,1,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7353c20a6eac2ac0d9d13791577080d":[3,0,0,16,1,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28":[1,0,0,17,1,6],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28":[3,0,0,16,1,6],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7":[1,0,0,17,1,11],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7":[3,0,0,16,1,11],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html":[1,0,0,17,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html":[3,0,0,16,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06":[1,0,0,17,2,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06":[3,0,0,16,2,1],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e":[1,0,0,17,2,8],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e":[3,0,0,16,2,8],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9":[1,0,0,17,2,6],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9":[3,0,0,16,2,6],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a":[1,0,0,17,2,3],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a":[3,0,0,16,2,3],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88":[1,0,0,17,2,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88":[3,0,0,16,2,2],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681":[1,0,0,17,2,7],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681":[3,0,0,16,2,7],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ab11be6e7afeef1ac9e4314ad8345e0b0":[1,0,0,17,2,4],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ab11be6e7afeef1ac9e4314ad8345e0b0":[3,0,0,16,2,4],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a":[1,0,0,17,2,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a":[3,0,0,16,2,0],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06":[1,0,0,17,2,5],
+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06":[3,0,0,16,2,5],
+"structgridfire_1_1_net_in.html":[1,0,0,18],
+"structgridfire_1_1_net_in.html":[3,0,0,17],
+"structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577":[1,0,0,18,3],
+"structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577":[3,0,0,17,3],
+"structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1":[1,0,0,18,7],
+"structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1":[3,0,0,17,7],
+"structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1":[1,0,0,18,1],
+"structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1":[3,0,0,17,1],
+"structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65":[1,0,0,18,0],
+"structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65":[3,0,0,17,0],
+"structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a":[1,0,0,18,4],
+"structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a":[3,0,0,17,4],
+"structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be":[1,0,0,18,6],
+"structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be":[3,0,0,17,6],
+"structgridfire_1_1_net_in.html#a6a5e909b46094ffa20da9a3da906e43f":[1,0,0,18,2],
+"structgridfire_1_1_net_in.html#a6a5e909b46094ffa20da9a3da906e43f":[3,0,0,17,2],
+"structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b":[1,0,0,18,5],
+"structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b":[3,0,0,17,5],
+"structgridfire_1_1_net_out.html":[1,0,0,19],
+"structgridfire_1_1_net_out.html":[3,0,0,18],
+"structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a":[1,0,0,19,1],
+"structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a":[3,0,0,18,1],
+"structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6":[1,0,0,19,2],
+"structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6":[3,0,0,18,2],
+"structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6":[1,0,0,19,3],
+"structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6":[3,0,0,18,3],
+"structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b":[1,0,0,19,0],
+"structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b":[3,0,0,18,0],
+"structgridfire_1_1_priming_report.html":[1,0,0,22],
+"structgridfire_1_1_priming_report.html":[3,0,0,21],
+"structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb":[1,0,0,22,2],
+"structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb":[3,0,0,21,2],
+"structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7":[1,0,0,22,1],
+"structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7":[3,0,0,21,1],
+"structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d":[1,0,0,22,3],
+"structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d":[3,0,0,21,3],
+"structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736":[1,0,0,22,0],
+"structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736":[3,0,0,21,0],
+"structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3":[1,0,0,22,4],
+"structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3":[3,0,0,21,4],
+"structgridfire_1_1_q_s_e_cache_config.html":[1,0,0,23],
+"structgridfire_1_1_q_s_e_cache_config.html":[3,0,0,22],
+"structgridfire_1_1_q_s_e_cache_config.html#a31d3e8d1b83109524c94641ce06fa351":[1,0,0,23,2],
+"structgridfire_1_1_q_s_e_cache_config.html#a31d3e8d1b83109524c94641ce06fa351":[3,0,0,22,2],
+"structgridfire_1_1_q_s_e_cache_config.html#a57b7ca68463aa9b78007e5cf35ebf7ce":[1,0,0,23,0],
+"structgridfire_1_1_q_s_e_cache_config.html#a57b7ca68463aa9b78007e5cf35ebf7ce":[3,0,0,22,0],
+"structgridfire_1_1_q_s_e_cache_config.html#af4dca2b24aa364fbbf6e99eb26774f40":[1,0,0,23,1],
+"structgridfire_1_1_q_s_e_cache_config.html#af4dca2b24aa364fbbf6e99eb26774f40":[3,0,0,22,1],
+"structgridfire_1_1_q_s_e_cache_key.html":[1,0,0,24],
+"structgridfire_1_1_q_s_e_cache_key.html":[3,0,0,23],
+"structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7":[1,0,0,24,7],
+"structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7":[3,0,0,23,7],
+"structgridfire_1_1_q_s_e_cache_key.html#a3078528fc69b8e687448d3108a216c03":[1,0,0,24,0],
+"structgridfire_1_1_q_s_e_cache_key.html#a3078528fc69b8e687448d3108a216c03":[3,0,0,23,0],
+"structgridfire_1_1_q_s_e_cache_key.html#a711acccecadd93495fd08c81838be2d8":[1,0,0,24,4]
};
diff --git a/docs/html/navtreeindex7.js b/docs/html/navtreeindex7.js
index 63089d66..6d7efe26 100644
--- a/docs/html/navtreeindex7.js
+++ b/docs/html/navtreeindex7.js
@@ -1,239 +1,244 @@
var NAVTREEINDEX7 =
{
-"structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63":[0,8,0,24,6],
-"structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63":[2,0,0,23,6],
-"structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3":[0,8,0,24,1],
-"structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3":[2,0,0,23,1],
-"structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81":[0,8,0,24,3],
-"structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81":[2,0,0,23,3],
-"structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a":[0,8,0,24,8],
-"structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a":[2,0,0,23,8],
-"structgridfire_1_1_step_derivatives.html":[0,8,0,26],
-"structgridfire_1_1_step_derivatives.html":[2,0,0,25],
-"structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008":[0,8,0,26,1],
-"structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008":[2,0,0,25,1],
-"structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d":[0,8,0,26,0],
-"structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d":[2,0,0,25,0],
-"structgridfire_1_1approx8_1_1_approx8_net.html":[0,8,0,0,0],
-"structgridfire_1_1approx8_1_1_approx8_net.html":[2,0,0,0,0],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a010df59d40b3bc8a802224968922ebde":[0,8,0,0,0,11],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a010df59d40b3bc8a802224968922ebde":[2,0,0,0,0,11],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a18501627dceb5d084bc7ba19f119826f":[0,8,0,0,0,3],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a18501627dceb5d084bc7ba19f119826f":[2,0,0,0,0,3],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a1af9135867aa3786721b89dbfdc4aee0":[0,8,0,0,0,8],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a1af9135867aa3786721b89dbfdc4aee0":[2,0,0,0,0,8],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a296e54c1b22f0c5d4d07a13577c6e069":[0,8,0,0,0,0],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a296e54c1b22f0c5d4d07a13577c6e069":[2,0,0,0,0,0],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a31928b4041479da6515a90569322fc02":[0,8,0,0,0,13],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a31928b4041479da6515a90569322fc02":[2,0,0,0,0,13],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a562c2383f585d3e9984225584d61c037":[0,8,0,0,0,2],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a562c2383f585d3e9984225584d61c037":[2,0,0,0,0,2],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a7218aa9b3dbe7c6eca52119e115692db":[0,8,0,0,0,14],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a7218aa9b3dbe7c6eca52119e115692db":[2,0,0,0,0,14],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a82977ad3df7f620e80a6235b3fe64731":[0,8,0,0,0,6],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a82977ad3df7f620e80a6235b3fe64731":[2,0,0,0,0,6],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a928b7810cb2993d59d40aa73c2faef18":[0,8,0,0,0,12],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a928b7810cb2993d59d40aa73c2faef18":[2,0,0,0,0,12],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a95b9a07e29285884e6de523f8132f653":[0,8,0,0,0,1],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a95b9a07e29285884e6de523f8132f653":[2,0,0,0,0,1],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a9647205f52fb0fa21316be39c3a6d709":[0,8,0,0,0,7],
-"structgridfire_1_1approx8_1_1_approx8_net.html#a9647205f52fb0fa21316be39c3a6d709":[2,0,0,0,0,7],
-"structgridfire_1_1approx8_1_1_approx8_net.html#ab0a43fee658efcaacfe7e6fb4870569b":[0,8,0,0,0,5],
-"structgridfire_1_1approx8_1_1_approx8_net.html#ab0a43fee658efcaacfe7e6fb4870569b":[2,0,0,0,0,5],
-"structgridfire_1_1approx8_1_1_approx8_net.html#ab4e95622dc0414ad7e636ef811e600af":[0,8,0,0,0,10],
-"structgridfire_1_1approx8_1_1_approx8_net.html#ab4e95622dc0414ad7e636ef811e600af":[2,0,0,0,0,10],
-"structgridfire_1_1approx8_1_1_approx8_net.html#acc735a17e005f7e25c68a86d9735ec4c":[0,8,0,0,0,4],
-"structgridfire_1_1approx8_1_1_approx8_net.html#acc735a17e005f7e25c68a86d9735ec4c":[2,0,0,0,0,4],
-"structgridfire_1_1approx8_1_1_approx8_net.html#ad43418fd8c536ebc814d5e6de555256c":[0,8,0,0,0,9],
-"structgridfire_1_1approx8_1_1_approx8_net.html#ad43418fd8c536ebc814d5e6de555256c":[2,0,0,0,0,9],
-"structgridfire_1_1approx8_1_1_jacobian.html":[0,8,0,0,2],
-"structgridfire_1_1approx8_1_1_jacobian.html":[2,0,0,0,2],
-"structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa":[0,8,0,0,2,0],
-"structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa":[2,0,0,0,2,0],
-"structgridfire_1_1approx8_1_1_o_d_e.html":[0,8,0,0,3],
-"structgridfire_1_1approx8_1_1_o_d_e.html":[2,0,0,0,3],
-"structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0":[0,8,0,0,3,0],
-"structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0":[2,0,0,0,3,0],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html":[0,8,0,1,4,0],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html":[2,0,0,1,4,0],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a24207163a7ea2dde675b458f9df37a99":[0,8,0,1,4,0,0],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a24207163a7ea2dde675b458f9df37a99":[2,0,0,1,4,0,0],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a352cd33629e63286808df617d36cb70b":[0,8,0,1,4,0,2],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a352cd33629e63286808df617d36cb70b":[2,0,0,1,4,0,2],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963":[0,8,0,1,4,0,3],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963":[2,0,0,1,4,0,3],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf":[0,8,0,1,4,0,5],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf":[2,0,0,1,4,0,5],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44":[0,8,0,1,4,0,1],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44":[2,0,0,1,4,0,1],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#ac1cddf0f2955d4282afcf4a90a2de9c0":[0,8,0,1,4,0,4],
-"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#ac1cddf0f2955d4282afcf4a90a2de9c0":[2,0,0,1,4,0,4],
-"structgridfire_1_1expectations_1_1_engine_error.html":[0,8,0,2,0],
-"structgridfire_1_1expectations_1_1_engine_error.html":[2,0,0,2,0],
-"structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897":[0,8,0,2,0,1],
-"structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897":[2,0,0,2,0,1],
-"structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7":[0,8,0,2,0,2],
-"structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7":[2,0,0,2,0,2],
-"structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897":[0,8,0,2,0,4],
-"structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897":[2,0,0,2,0,4],
-"structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc":[0,8,0,2,0,3],
-"structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc":[2,0,0,2,0,3],
-"structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa":[0,8,0,2,0,0],
-"structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa":[2,0,0,2,0,0],
-"structgridfire_1_1expectations_1_1_engine_index_error.html":[0,8,0,2,1],
-"structgridfire_1_1expectations_1_1_engine_index_error.html":[2,0,0,2,1],
-"structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e":[0,8,0,2,1,2],
-"structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e":[2,0,0,2,1,2],
-"structgridfire_1_1expectations_1_1_engine_index_error.html#ab44bba2a197d43319e65cd200cd347b0":[0,8,0,2,1,0],
-"structgridfire_1_1expectations_1_1_engine_index_error.html#ab44bba2a197d43319e65cd200cd347b0":[2,0,0,2,1,0],
-"structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903":[0,8,0,2,1,1],
-"structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903":[2,0,0,2,1,1],
-"structgridfire_1_1expectations_1_1_stale_engine_error.html":[0,8,0,2,2],
-"structgridfire_1_1expectations_1_1_stale_engine_error.html":[2,0,0,2,2],
-"structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590":[0,8,0,2,2,2],
-"structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590":[2,0,0,2,2,2],
-"structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10":[0,8,0,2,2,0],
-"structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10":[2,0,0,2,2,0],
-"structgridfire_1_1expectations_1_1_stale_engine_error.html#ad8ba0f62a2da0d93aba429181e7e6f84":[0,8,0,2,2,1],
-"structgridfire_1_1expectations_1_1_stale_engine_error.html#ad8ba0f62a2da0d93aba429181e7e6f84":[2,0,0,2,2,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html":[0,8,0,4,4,0],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html":[2,0,0,4,4,0],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a2da59e4f6e2ba3eff581bacabbf387de":[0,8,0,4,4,0,2],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a2da59e4f6e2ba3eff581bacabbf387de":[2,0,0,4,4,0,2],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a5f673ab0425f06f3639cc9b5200ee3af":[0,8,0,4,4,0,0],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a5f673ab0425f06f3639cc9b5200ee3af":[2,0,0,4,4,0,0],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070":[0,8,0,4,4,0,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070":[2,0,0,4,4,0,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#aa99e1fa2fd4937592c066b0df16f377f":[0,8,0,4,4,0,3],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#aa99e1fa2fd4937592c066b0df16f377f":[2,0,0,4,4,0,3],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html":[0,8,0,4,4,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html":[2,0,0,4,4,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a3cb7ee6f3031997aab99c5502b61d90e":[0,8,0,4,4,1,0],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a3cb7ee6f3031997aab99c5502b61d90e":[2,0,0,4,4,1,0],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a48e170f77812fdbc06cff18267b241ca":[0,8,0,4,4,1,3],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a48e170f77812fdbc06cff18267b241ca":[2,0,0,4,4,1,3],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a750aa8cd8aa8b8da6d1f0db1cc66233d":[0,8,0,4,4,1,2],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a750aa8cd8aa8b8da6d1f0db1cc66233d":[2,0,0,4,4,1,2],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a7d291ba80f958fe34ae72b21c6fab380":[0,8,0,4,4,1,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a7d291ba80f958fe34ae72b21c6fab380":[2,0,0,4,4,1,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html":[0,8,0,4,4,2],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html":[2,0,0,4,4,2],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aea71e9198606e0ba393321178f988fcc":[0,8,0,4,4,2,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aea71e9198606e0ba393321178f988fcc":[2,0,0,4,4,2,1],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aec714697f3f5102124561252233fc350":[0,8,0,4,4,2,0],
-"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aec714697f3f5102124561252233fc350":[2,0,0,4,4,2,0],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html":[0,8,0,4,0,0],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html":[2,0,0,4,0,0],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a64c1cef58c1bdeab1fcc7f9a30a71609":[0,8,0,4,0,0,2],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a64c1cef58c1bdeab1fcc7f9a30a71609":[2,0,0,4,0,0,2],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a677505655a1c6922dfa9b32b70d7e815":[0,8,0,4,0,0,0],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a677505655a1c6922dfa9b32b70d7e815":[2,0,0,4,0,0,0],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#abb1416e2d8d4d27264c9eece547006b6":[0,8,0,4,0,0,3],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#abb1416e2d8d4d27264c9eece547006b6":[2,0,0,4,0,0,3],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#acf5c38826050594aee98d746d0ba40b2":[0,8,0,4,0,0,1],
-"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#acf5c38826050594aee98d746d0ba40b2":[2,0,0,4,0,0,1],
-"structgridfire_1_1reaclib_1_1_reaction_record.html":[0,8,0,5,0],
-"structgridfire_1_1reaclib_1_1_reaction_record.html":[2,0,0,5,0],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a2165deb1c0a54a5086b496cf34604fa5":[0,8,0,5,0,2],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a2165deb1c0a54a5086b496cf34604fa5":[2,0,0,5,0,2],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a523b7cfb0a6d8ddccd785aef2f425ad1":[0,8,0,5,0,7],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a523b7cfb0a6d8ddccd785aef2f425ad1":[2,0,0,5,0,7],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc":[0,8,0,5,0,0],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc":[2,0,0,5,0,0],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a67afc513db8dbcc43d79733e22ca8d39":[0,8,0,5,0,5],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a67afc513db8dbcc43d79733e22ca8d39":[2,0,0,5,0,5],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0":[0,8,0,5,0,1],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0":[2,0,0,5,0,1],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd":[0,8,0,5,0,6],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd":[2,0,0,5,0,6],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#aeeb8a1e078a27420e398663825cce644":[0,8,0,5,0,4],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#aeeb8a1e078a27420e398663825cce644":[2,0,0,5,0,4],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#af1b1d3b0308d965ef0697b247fcf9082":[0,8,0,5,0,3],
-"structgridfire_1_1reaclib_1_1_reaction_record.html#af1b1d3b0308d965ef0697b247fcf9082":[2,0,0,5,0,3],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html":[0,8,0,6,1],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html":[2,0,0,6,1],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2a9316d19bc2e8bf0a7872eb6fe8a53f":[0,8,0,6,1,3],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2a9316d19bc2e8bf0a7872eb6fe8a53f":[2,0,0,6,1,3],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2fa6b65e300dcd181222b743c2b3d6ed":[0,8,0,6,1,1],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2fa6b65e300dcd181222b743c2b3d6ed":[2,0,0,6,1,1],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f":[0,8,0,6,1,0],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f":[2,0,0,6,1,0],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a3d047485ebb57d6c763adfe4aae493b1":[0,8,0,6,1,4],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a3d047485ebb57d6c763adfe4aae493b1":[2,0,0,6,1,4],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a8c79db4e649b4eb1d29c43ebe4e95458":[0,8,0,6,1,6],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a8c79db4e649b4eb1d29c43ebe4e95458":[2,0,0,6,1,6],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ace9dbd928e179784e47eaa108ce8d721":[0,8,0,6,1,2],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ace9dbd928e179784e47eaa108ce8d721":[2,0,0,6,1,2],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#adf8e6ed7f91cb9e15d1469a808b1877a":[0,8,0,6,1,7],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#adf8e6ed7f91cb9e15d1469a808b1877a":[2,0,0,6,1,7],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ae57b2eac71cb4ed9947f40c9cb8fc3ca":[0,8,0,6,1,5],
-"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ae57b2eac71cb4ed9947f40c9cb8fc3ca":[2,0,0,6,1,5],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html":[0,8,0,8,0,0],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html":[2,0,0,8,0,0],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0":[0,8,0,8,0,0,2],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0":[2,0,0,8,0,0,2],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83":[0,8,0,8,0,0,4],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83":[2,0,0,8,0,0,4],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4":[0,8,0,8,0,0,3],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4":[2,0,0,8,0,0,3],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9":[0,8,0,8,0,0,1],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9":[2,0,0,8,0,0,1],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25":[0,8,0,8,0,0,0],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25":[2,0,0,8,0,0,0],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html":[0,8,0,8,0,1],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html":[2,0,0,8,0,1],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a035962dfdfc13d255def98befefcccd9":[0,8,0,8,0,1,6],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a035962dfdfc13d255def98befefcccd9":[2,0,0,8,0,1,6],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a17b83f2478395c934c4ec2c964e9d35e":[0,8,0,8,0,1,5],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a17b83f2478395c934c4ec2c964e9d35e":[2,0,0,8,0,1,5],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a226b007bfc9960b5c0bb7b88b4f122da":[0,8,0,8,0,1,2],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a226b007bfc9960b5c0bb7b88b4f122da":[2,0,0,8,0,1,2],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef":[0,8,0,8,0,1,12],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef":[2,0,0,8,0,1,12],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a49268e65b89444c3caf1e69323ce545b":[0,8,0,8,0,1,7],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a49268e65b89444c3caf1e69323ce545b":[2,0,0,8,0,1,7],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a":[0,8,0,8,0,1,1],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a":[2,0,0,8,0,1,1],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a69d773a1cfe4804876dbf23de1f212c9":[0,8,0,8,0,1,8],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a69d773a1cfe4804876dbf23de1f212c9":[2,0,0,8,0,1,8],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a6cc605a83b5ac5ae048d1044be284ada":[0,8,0,8,0,1,9],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a6cc605a83b5ac5ae048d1044be284ada":[2,0,0,8,0,1,9],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446":[0,8,0,8,0,1,11],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446":[2,0,0,8,0,1,11],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec":[0,8,0,8,0,1,4],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec":[2,0,0,8,0,1,4],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708":[0,8,0,8,0,1,10],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708":[2,0,0,8,0,1,10],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aec8c0a0b2fbb71cebb40c263f64385b3":[0,8,0,8,0,1,3],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aec8c0a0b2fbb71cebb40c263f64385b3":[2,0,0,8,0,1,3],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#affaaa55fc49d85e5de73f3a6ad5da7c0":[0,8,0,8,0,1,0],
-"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#affaaa55fc49d85e5de73f3a6ad5da7c0":[2,0,0,8,0,1,0],
-"structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html":[0,8,1,0],
-"structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html":[2,0,1,0],
-"structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3":[0,8,1,0,0],
-"structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3":[2,0,1,0,0],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html":[0,8,1,1],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html":[2,0,1,1],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html#a4b76e7119050266952ded94d6f0544cb":[0,8,1,1,0],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html#a4b76e7119050266952ded94d6f0544cb":[2,0,1,1,0],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html":[0,8,1,2],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html":[2,0,1,2],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9":[0,8,1,2,0],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9":[2,0,1,2,0],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html":[0,8,1,3],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html":[2,0,1,3],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921":[0,8,1,3,0],
-"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921":[2,0,1,3,0],
-"types_2bindings_8cpp.html":[3,0,1,2,8,0],
-"types_2bindings_8cpp.html#a37d2e0b6a2605d063eec5e2a64e9bcc5":[3,0,1,2,8,0,0],
-"types_2bindings_8cpp_source.html":[3,0,1,2,8,0],
-"types_2bindings_8h.html":[3,0,1,2,8,1],
-"types_2bindings_8h.html#a37d2e0b6a2605d063eec5e2a64e9bcc5":[3,0,1,2,8,1,0],
-"types_2bindings_8h_source.html":[3,0,1,2,8,1],
-"utils_2bindings_8cpp.html":[3,0,1,2,9,0],
-"utils_2bindings_8cpp.html#a7af842f50ca4a721518e716d0229697c":[3,0,1,2,9,0,0],
-"utils_2bindings_8cpp_source.html":[3,0,1,2,9,0],
-"utils_2bindings_8h.html":[3,0,1,2,9,1],
-"utils_2bindings_8h.html#a9eefca377142320755a869fafc6311c7":[3,0,1,2,9,1,0],
-"utils_2bindings_8h_source.html":[3,0,1,2,9,1]
+"structgridfire_1_1_q_s_e_cache_key.html#a711acccecadd93495fd08c81838be2d8":[3,0,0,23,4],
+"structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d":[1,0,0,24,2],
+"structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d":[3,0,0,23,2],
+"structgridfire_1_1_q_s_e_cache_key.html#ab860b40d4ccb3c16a962d96bc767ff05":[1,0,0,24,5],
+"structgridfire_1_1_q_s_e_cache_key.html#ab860b40d4ccb3c16a962d96bc767ff05":[3,0,0,23,5],
+"structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63":[1,0,0,24,6],
+"structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63":[3,0,0,23,6],
+"structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3":[1,0,0,24,1],
+"structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3":[3,0,0,23,1],
+"structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81":[1,0,0,24,3],
+"structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81":[3,0,0,23,3],
+"structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a":[1,0,0,24,8],
+"structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a":[3,0,0,23,8],
+"structgridfire_1_1_step_derivatives.html":[1,0,0,26],
+"structgridfire_1_1_step_derivatives.html":[3,0,0,25],
+"structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008":[1,0,0,26,1],
+"structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008":[3,0,0,25,1],
+"structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d":[1,0,0,26,0],
+"structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d":[3,0,0,25,0],
+"structgridfire_1_1approx8_1_1_approx8_net.html":[1,0,0,0,0],
+"structgridfire_1_1approx8_1_1_approx8_net.html":[3,0,0,0,0],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a010df59d40b3bc8a802224968922ebde":[1,0,0,0,0,11],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a010df59d40b3bc8a802224968922ebde":[3,0,0,0,0,11],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a18501627dceb5d084bc7ba19f119826f":[1,0,0,0,0,3],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a18501627dceb5d084bc7ba19f119826f":[3,0,0,0,0,3],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a1af9135867aa3786721b89dbfdc4aee0":[1,0,0,0,0,8],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a1af9135867aa3786721b89dbfdc4aee0":[3,0,0,0,0,8],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a296e54c1b22f0c5d4d07a13577c6e069":[1,0,0,0,0,0],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a296e54c1b22f0c5d4d07a13577c6e069":[3,0,0,0,0,0],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a31928b4041479da6515a90569322fc02":[1,0,0,0,0,13],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a31928b4041479da6515a90569322fc02":[3,0,0,0,0,13],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a562c2383f585d3e9984225584d61c037":[1,0,0,0,0,2],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a562c2383f585d3e9984225584d61c037":[3,0,0,0,0,2],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a7218aa9b3dbe7c6eca52119e115692db":[1,0,0,0,0,14],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a7218aa9b3dbe7c6eca52119e115692db":[3,0,0,0,0,14],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a82977ad3df7f620e80a6235b3fe64731":[1,0,0,0,0,6],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a82977ad3df7f620e80a6235b3fe64731":[3,0,0,0,0,6],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a928b7810cb2993d59d40aa73c2faef18":[1,0,0,0,0,12],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a928b7810cb2993d59d40aa73c2faef18":[3,0,0,0,0,12],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a95b9a07e29285884e6de523f8132f653":[1,0,0,0,0,1],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a95b9a07e29285884e6de523f8132f653":[3,0,0,0,0,1],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a9647205f52fb0fa21316be39c3a6d709":[1,0,0,0,0,7],
+"structgridfire_1_1approx8_1_1_approx8_net.html#a9647205f52fb0fa21316be39c3a6d709":[3,0,0,0,0,7],
+"structgridfire_1_1approx8_1_1_approx8_net.html#ab0a43fee658efcaacfe7e6fb4870569b":[1,0,0,0,0,5],
+"structgridfire_1_1approx8_1_1_approx8_net.html#ab0a43fee658efcaacfe7e6fb4870569b":[3,0,0,0,0,5],
+"structgridfire_1_1approx8_1_1_approx8_net.html#ab4e95622dc0414ad7e636ef811e600af":[1,0,0,0,0,10],
+"structgridfire_1_1approx8_1_1_approx8_net.html#ab4e95622dc0414ad7e636ef811e600af":[3,0,0,0,0,10],
+"structgridfire_1_1approx8_1_1_approx8_net.html#acc735a17e005f7e25c68a86d9735ec4c":[1,0,0,0,0,4],
+"structgridfire_1_1approx8_1_1_approx8_net.html#acc735a17e005f7e25c68a86d9735ec4c":[3,0,0,0,0,4],
+"structgridfire_1_1approx8_1_1_approx8_net.html#ad43418fd8c536ebc814d5e6de555256c":[1,0,0,0,0,9],
+"structgridfire_1_1approx8_1_1_approx8_net.html#ad43418fd8c536ebc814d5e6de555256c":[3,0,0,0,0,9],
+"structgridfire_1_1approx8_1_1_jacobian.html":[1,0,0,0,2],
+"structgridfire_1_1approx8_1_1_jacobian.html":[3,0,0,0,2],
+"structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa":[1,0,0,0,2,0],
+"structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa":[3,0,0,0,2,0],
+"structgridfire_1_1approx8_1_1_o_d_e.html":[1,0,0,0,3],
+"structgridfire_1_1approx8_1_1_o_d_e.html":[3,0,0,0,3],
+"structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0":[1,0,0,0,3,0],
+"structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0":[3,0,0,0,3,0],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html":[1,0,0,1,4,0],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html":[3,0,0,1,4,0],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a24207163a7ea2dde675b458f9df37a99":[1,0,0,1,4,0,0],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a24207163a7ea2dde675b458f9df37a99":[3,0,0,1,4,0,0],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a352cd33629e63286808df617d36cb70b":[1,0,0,1,4,0,2],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a352cd33629e63286808df617d36cb70b":[3,0,0,1,4,0,2],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963":[1,0,0,1,4,0,3],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963":[3,0,0,1,4,0,3],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf":[1,0,0,1,4,0,5],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf":[3,0,0,1,4,0,5],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44":[1,0,0,1,4,0,1],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44":[3,0,0,1,4,0,1],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#ac1cddf0f2955d4282afcf4a90a2de9c0":[1,0,0,1,4,0,4],
+"structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#ac1cddf0f2955d4282afcf4a90a2de9c0":[3,0,0,1,4,0,4],
+"structgridfire_1_1expectations_1_1_engine_error.html":[1,0,0,2,0],
+"structgridfire_1_1expectations_1_1_engine_error.html":[3,0,0,2,0],
+"structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897":[1,0,0,2,0,1],
+"structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897":[3,0,0,2,0,1],
+"structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7":[1,0,0,2,0,2],
+"structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7":[3,0,0,2,0,2],
+"structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897":[1,0,0,2,0,4],
+"structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897":[3,0,0,2,0,4],
+"structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc":[1,0,0,2,0,3],
+"structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc":[3,0,0,2,0,3],
+"structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa":[1,0,0,2,0,0],
+"structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa":[3,0,0,2,0,0],
+"structgridfire_1_1expectations_1_1_engine_index_error.html":[1,0,0,2,1],
+"structgridfire_1_1expectations_1_1_engine_index_error.html":[3,0,0,2,1],
+"structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e":[1,0,0,2,1,2],
+"structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e":[3,0,0,2,1,2],
+"structgridfire_1_1expectations_1_1_engine_index_error.html#ab44bba2a197d43319e65cd200cd347b0":[1,0,0,2,1,0],
+"structgridfire_1_1expectations_1_1_engine_index_error.html#ab44bba2a197d43319e65cd200cd347b0":[3,0,0,2,1,0],
+"structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903":[1,0,0,2,1,1],
+"structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903":[3,0,0,2,1,1],
+"structgridfire_1_1expectations_1_1_stale_engine_error.html":[1,0,0,2,2],
+"structgridfire_1_1expectations_1_1_stale_engine_error.html":[3,0,0,2,2],
+"structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590":[1,0,0,2,2,2],
+"structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590":[3,0,0,2,2,2],
+"structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10":[1,0,0,2,2,0],
+"structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10":[3,0,0,2,2,0],
+"structgridfire_1_1expectations_1_1_stale_engine_error.html#ad8ba0f62a2da0d93aba429181e7e6f84":[1,0,0,2,2,1],
+"structgridfire_1_1expectations_1_1_stale_engine_error.html#ad8ba0f62a2da0d93aba429181e7e6f84":[3,0,0,2,2,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html":[1,0,0,4,4,0],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html":[3,0,0,4,4,0],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a2da59e4f6e2ba3eff581bacabbf387de":[1,0,0,4,4,0,2],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a2da59e4f6e2ba3eff581bacabbf387de":[3,0,0,4,4,0,2],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a5f673ab0425f06f3639cc9b5200ee3af":[1,0,0,4,4,0,0],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a5f673ab0425f06f3639cc9b5200ee3af":[3,0,0,4,4,0,0],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070":[1,0,0,4,4,0,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070":[3,0,0,4,4,0,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#aa99e1fa2fd4937592c066b0df16f377f":[1,0,0,4,4,0,3],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#aa99e1fa2fd4937592c066b0df16f377f":[3,0,0,4,4,0,3],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html":[1,0,0,4,4,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html":[3,0,0,4,4,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a3cb7ee6f3031997aab99c5502b61d90e":[1,0,0,4,4,1,0],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a3cb7ee6f3031997aab99c5502b61d90e":[3,0,0,4,4,1,0],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a48e170f77812fdbc06cff18267b241ca":[1,0,0,4,4,1,3],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a48e170f77812fdbc06cff18267b241ca":[3,0,0,4,4,1,3],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a750aa8cd8aa8b8da6d1f0db1cc66233d":[1,0,0,4,4,1,2],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a750aa8cd8aa8b8da6d1f0db1cc66233d":[3,0,0,4,4,1,2],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a7d291ba80f958fe34ae72b21c6fab380":[1,0,0,4,4,1,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a7d291ba80f958fe34ae72b21c6fab380":[3,0,0,4,4,1,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html":[1,0,0,4,4,2],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html":[3,0,0,4,4,2],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aea71e9198606e0ba393321178f988fcc":[1,0,0,4,4,2,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aea71e9198606e0ba393321178f988fcc":[3,0,0,4,4,2,1],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aec714697f3f5102124561252233fc350":[1,0,0,4,4,2,0],
+"structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aec714697f3f5102124561252233fc350":[3,0,0,4,4,2,0],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html":[1,0,0,4,0,0],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html":[3,0,0,4,0,0],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a64c1cef58c1bdeab1fcc7f9a30a71609":[1,0,0,4,0,0,2],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a64c1cef58c1bdeab1fcc7f9a30a71609":[3,0,0,4,0,0,2],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a677505655a1c6922dfa9b32b70d7e815":[1,0,0,4,0,0,0],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a677505655a1c6922dfa9b32b70d7e815":[3,0,0,4,0,0,0],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#abb1416e2d8d4d27264c9eece547006b6":[1,0,0,4,0,0,3],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#abb1416e2d8d4d27264c9eece547006b6":[3,0,0,4,0,0,3],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#acf5c38826050594aee98d746d0ba40b2":[1,0,0,4,0,0,1],
+"structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#acf5c38826050594aee98d746d0ba40b2":[3,0,0,4,0,0,1],
+"structgridfire_1_1reaclib_1_1_reaction_record.html":[1,0,0,5,0],
+"structgridfire_1_1reaclib_1_1_reaction_record.html":[3,0,0,5,0],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a2165deb1c0a54a5086b496cf34604fa5":[1,0,0,5,0,2],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a2165deb1c0a54a5086b496cf34604fa5":[3,0,0,5,0,2],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a523b7cfb0a6d8ddccd785aef2f425ad1":[1,0,0,5,0,7],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a523b7cfb0a6d8ddccd785aef2f425ad1":[3,0,0,5,0,7],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc":[1,0,0,5,0,0],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc":[3,0,0,5,0,0],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a67afc513db8dbcc43d79733e22ca8d39":[1,0,0,5,0,5],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a67afc513db8dbcc43d79733e22ca8d39":[3,0,0,5,0,5],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0":[1,0,0,5,0,1],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0":[3,0,0,5,0,1],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd":[1,0,0,5,0,6],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd":[3,0,0,5,0,6],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#aeeb8a1e078a27420e398663825cce644":[1,0,0,5,0,4],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#aeeb8a1e078a27420e398663825cce644":[3,0,0,5,0,4],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#af1b1d3b0308d965ef0697b247fcf9082":[1,0,0,5,0,3],
+"structgridfire_1_1reaclib_1_1_reaction_record.html#af1b1d3b0308d965ef0697b247fcf9082":[3,0,0,5,0,3],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html":[1,0,0,6,1],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html":[3,0,0,6,1],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2a9316d19bc2e8bf0a7872eb6fe8a53f":[1,0,0,6,1,3],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2a9316d19bc2e8bf0a7872eb6fe8a53f":[3,0,0,6,1,3],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2fa6b65e300dcd181222b743c2b3d6ed":[1,0,0,6,1,1],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2fa6b65e300dcd181222b743c2b3d6ed":[3,0,0,6,1,1],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f":[1,0,0,6,1,0],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f":[3,0,0,6,1,0],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a3d047485ebb57d6c763adfe4aae493b1":[1,0,0,6,1,4],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a3d047485ebb57d6c763adfe4aae493b1":[3,0,0,6,1,4],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a8c79db4e649b4eb1d29c43ebe4e95458":[1,0,0,6,1,6],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a8c79db4e649b4eb1d29c43ebe4e95458":[3,0,0,6,1,6],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ace9dbd928e179784e47eaa108ce8d721":[1,0,0,6,1,2],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ace9dbd928e179784e47eaa108ce8d721":[3,0,0,6,1,2],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#adf8e6ed7f91cb9e15d1469a808b1877a":[1,0,0,6,1,7],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#adf8e6ed7f91cb9e15d1469a808b1877a":[3,0,0,6,1,7],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ae57b2eac71cb4ed9947f40c9cb8fc3ca":[1,0,0,6,1,5],
+"structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ae57b2eac71cb4ed9947f40c9cb8fc3ca":[3,0,0,6,1,5],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html":[1,0,0,8,0,0],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html":[3,0,0,8,0,0],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0":[1,0,0,8,0,0,2],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0":[3,0,0,8,0,0,2],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83":[1,0,0,8,0,0,4],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83":[3,0,0,8,0,0,4],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4":[1,0,0,8,0,0,3],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4":[3,0,0,8,0,0,3],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9":[1,0,0,8,0,0,1],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9":[3,0,0,8,0,0,1],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25":[1,0,0,8,0,0,0],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25":[3,0,0,8,0,0,0],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html":[1,0,0,8,0,1],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html":[3,0,0,8,0,1],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a035962dfdfc13d255def98befefcccd9":[1,0,0,8,0,1,6],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a035962dfdfc13d255def98befefcccd9":[3,0,0,8,0,1,6],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a17b83f2478395c934c4ec2c964e9d35e":[1,0,0,8,0,1,5],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a17b83f2478395c934c4ec2c964e9d35e":[3,0,0,8,0,1,5],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a226b007bfc9960b5c0bb7b88b4f122da":[1,0,0,8,0,1,2],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a226b007bfc9960b5c0bb7b88b4f122da":[3,0,0,8,0,1,2],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef":[1,0,0,8,0,1,12],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef":[3,0,0,8,0,1,12],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a49268e65b89444c3caf1e69323ce545b":[1,0,0,8,0,1,7],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a49268e65b89444c3caf1e69323ce545b":[3,0,0,8,0,1,7],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a":[1,0,0,8,0,1,1],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a":[3,0,0,8,0,1,1],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a69d773a1cfe4804876dbf23de1f212c9":[1,0,0,8,0,1,8],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a69d773a1cfe4804876dbf23de1f212c9":[3,0,0,8,0,1,8],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a6cc605a83b5ac5ae048d1044be284ada":[1,0,0,8,0,1,9],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a6cc605a83b5ac5ae048d1044be284ada":[3,0,0,8,0,1,9],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446":[1,0,0,8,0,1,11],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446":[3,0,0,8,0,1,11],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec":[1,0,0,8,0,1,4],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec":[3,0,0,8,0,1,4],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708":[1,0,0,8,0,1,10],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708":[3,0,0,8,0,1,10],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aec8c0a0b2fbb71cebb40c263f64385b3":[1,0,0,8,0,1,3],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aec8c0a0b2fbb71cebb40c263f64385b3":[3,0,0,8,0,1,3],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#affaaa55fc49d85e5de73f3a6ad5da7c0":[1,0,0,8,0,1,0],
+"structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#affaaa55fc49d85e5de73f3a6ad5da7c0":[3,0,0,8,0,1,0],
+"structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html":[1,0,1,0],
+"structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html":[3,0,1,0],
+"structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3":[1,0,1,0,0],
+"structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3":[3,0,1,0,0],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html":[1,0,1,1],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html":[3,0,1,1],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html#a4b76e7119050266952ded94d6f0544cb":[1,0,1,1,0],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html#a4b76e7119050266952ded94d6f0544cb":[3,0,1,1,0],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html":[1,0,1,2],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html":[3,0,1,2],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9":[1,0,1,2,0],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9":[3,0,1,2,0],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html":[1,0,1,3],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html":[3,0,1,3],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921":[1,0,1,3,0],
+"structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921":[3,0,1,3,0],
+"types_2bindings_8cpp.html":[4,0,1,2,8,0],
+"types_2bindings_8cpp.html#a37d2e0b6a2605d063eec5e2a64e9bcc5":[4,0,1,2,8,0,0],
+"types_2bindings_8cpp_source.html":[4,0,1,2,8,0],
+"types_2bindings_8h.html":[4,0,1,2,8,1],
+"types_2bindings_8h.html#a37d2e0b6a2605d063eec5e2a64e9bcc5":[4,0,1,2,8,1,0],
+"types_2bindings_8h_source.html":[4,0,1,2,8,1],
+"utils_2bindings_8cpp.html":[4,0,1,2,9,0],
+"utils_2bindings_8cpp.html#a7af842f50ca4a721518e716d0229697c":[4,0,1,2,9,0,0],
+"utils_2bindings_8cpp_source.html":[4,0,1,2,9,0],
+"utils_2bindings_8h.html":[4,0,1,2,9,1],
+"utils_2bindings_8h.html#a9eefca377142320755a869fafc6311c7":[4,0,1,2,9,1,0],
+"utils_2bindings_8h_source.html":[4,0,1,2,9,1]
};
diff --git a/docs/html/pages.html b/docs/html/pages.html
index 320668f8..3e4c110a 100644
--- a/docs/html/pages.html
+++ b/docs/html/pages.html
@@ -104,7 +104,7 @@ $(function(){initNavTree('pages.html',''); initResizable(true); });
Here is a list of all related documentation pages:
diff --git a/docs/html/search/all_0.js b/docs/html/search/all_0.js
index 9b6a3bc6..48214497 100644
--- a/docs/html/search/all_0.js
+++ b/docs/html/search/all_0.js
@@ -1,36 +1,7 @@
var searchData=
[
- ['a_0',['a',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a677505655a1c6922dfa9b32b70d7e815',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord']]],
- ['a0_1',['a0',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2fa6b65e300dcd181222b743c2b3d6ed',1,'gridfire::reaction::RateCoefficientSet']]],
- ['a1_2',['a1',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ace9dbd928e179784e47eaa108ce8d721',1,'gridfire::reaction::RateCoefficientSet']]],
- ['a2_3',['a2',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2a9316d19bc2e8bf0a7872eb6fe8a53f',1,'gridfire::reaction::RateCoefficientSet']]],
- ['a3_4',['a3',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a3d047485ebb57d6c763adfe4aae493b1',1,'gridfire::reaction::RateCoefficientSet']]],
- ['a4_5',['a4',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ae57b2eac71cb4ed9947f40c9cb8fc3ca',1,'gridfire::reaction::RateCoefficientSet']]],
- ['a5_6',['a5',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a8c79db4e649b4eb1d29c43ebe4e95458',1,'gridfire::reaction::RateCoefficientSet']]],
- ['a6_7',['a6',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#adf8e6ed7f91cb9e15d1469a808b1877a',1,'gridfire::reaction::RateCoefficientSet']]],
- ['abs_5fstype_5fregister_5fdynamic_5fengine_5fbindings_8',['abs_stype_register_dynamic_engine_bindings',['../engine_2bindings_8cpp.html#a4066aaf2dca39ee1ed37ad53169f1cdf',1,'abs_stype_register_dynamic_engine_bindings(pybind11::module &m): bindings.cpp'],['../engine_2bindings_8h.html#a4066aaf2dca39ee1ed37ad53169f1cdf',1,'abs_stype_register_dynamic_engine_bindings(pybind11::module &m): bindings.cpp']]],
- ['abs_5fstype_5fregister_5fengine_5fbindings_9',['abs_stype_register_engine_bindings',['../engine_2bindings_8cpp.html#a01ff627d4ef6a21b3323cd383dd29841',1,'abs_stype_register_engine_bindings(pybind11::module &m): bindings.cpp'],['../engine_2bindings_8h.html#a01ff627d4ef6a21b3323cd383dd29841',1,'abs_stype_register_engine_bindings(pybind11::module &m): bindings.cpp']]],
- ['adaptive_20network_20view_10',['C++ Example: Adaptive Network View',['../index.html#autotoc_md19',1,'']]],
- ['adaptiveengineview_11',['AdaptiveEngineView',['../classgridfire_1_1_adaptive_engine_view.html',1,'gridfire::AdaptiveEngineView'],['../classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455',1,'gridfire::AdaptiveEngineView::AdaptiveEngineView()']]],
- ['adaptiveengineview_20example_12',['AdaptiveEngineView Example',['../engine_8h.html#AdaptiveEngineViewExample',1,'']]],
- ['add_5freaction_13',['add_reaction',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a14a24cb8ea25a1514134acc51197f1de',1,'gridfire::reaction::LogicalReaction::add_reaction()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a339dbbf883b6ae20e33d9782d8376bcf',1,'gridfire::reaction::TemplatedReactionSet::add_reaction()']]],
- ['addouble_14',['ADDouble',['../classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d',1,'gridfire::screening::ScreeningModel::ADDouble'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96',1,'gridfire::screening::BareScreeningModel::ADDouble'],['../namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc',1,'gridfire::ADDouble'],['../namespacegridfire_1_1screening.html#ae7dd1a7ccb7bf3c05084094ab008d8a3',1,'gridfire::screening::ADDouble'],['../py__screening_8cpp.html#a4c5a7b887f31226ce0b82409f819833b',1,'ADDouble: py_screening.cpp']]],
- ['affected_5fspecies_5findices_15',['affected_species_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3e2e67e532970738d20491ea56b170f3',1,'gridfire::GraphEngine::PrecomputedReaction']]],
- ['aion_16',['aIon',['../structgridfire_1_1approx8_1_1_approx8_net.html#a296e54c1b22f0c5d4d07a13577c6e069',1,'gridfire::approx8::Approx8Net']]],
- ['algebraic_5findices_17',['algebraic_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ab11be6e7afeef1ac9e4314ad8345e0b0',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
- ['algorithmic_20workflow_20in_20directnetworksolver_18',['Algorithmic Workflow in DirectNetworkSolver',['../index.html#autotoc_md15',1,'']]],
- ['all_19',['All',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505ab1c94ca2fbc3e78fc30069c8d0f01680',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
- ['all_5fspecies_20',['all_species',['../classgridfire_1_1reaction_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224',1,'gridfire::reaction::Reaction::all_species()'],['../classgridfire_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224',1,'gridfire::Reaction::all_species()']]],
- ['analyzetimescalepoolconnectivity_21',['analyzeTimescalePoolConnectivity',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#af13e764c118a6cc51847384e9c70e05b',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['and_20installation_22',['Python Bindings and Installation',['../index.html#autotoc_md7',1,'']]],
- ['and_20installation_20instructions_23',['Build and Installation Instructions',['../index.html#autotoc_md2',1,'']]],
- ['and_20logical_20flow_24',['Code Architecture and Logical Flow',['../index.html#autotoc_md9',1,'']]],
- ['approx8_25',['APPROX8',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea',1,'gridfire']]],
- ['approx8net_26',['Approx8Net',['../structgridfire_1_1approx8_1_1_approx8_net.html',1,'gridfire::approx8']]],
- ['approx8network_27',['Approx8Network',['../classgridfire_1_1approx8_1_1_approx8_network.html',1,'gridfire::approx8::Approx8Network'],['../classgridfire_1_1approx8_1_1_approx8_network.html#a65066078081c544be4e56e25eb407c8b',1,'gridfire::approx8::Approx8Network::Approx8Network()']]],
- ['architecture_20and_20logical_20flow_28',['Code Architecture and Logical Flow',['../index.html#autotoc_md9',1,'']]],
- ['atomicreverserate_29',['AtomicReverseRate',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html',1,'gridfire::GraphEngine::AtomicReverseRate'],['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf',1,'gridfire::GraphEngine::AtomicReverseRate::AtomicReverseRate()']]],
- ['available_20engines_30',['Available Engines',['../engine_8h.html#AvailableEngines',1,'']]],
- ['available_20partition_20functions_31',['Available Partition Functions',['../index.html#autotoc_md11',1,'']]],
- ['available_20views_32',['Available Views',['../engine_8h.html#AvailableViews',1,'']]]
+ ['1_201_20pypi_20release_0',['1.1 PyPI Release',['../md_docs_2static_2usage.html#autotoc_md26',1,'']]],
+ ['1_202_20development_20from_20source_1',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md27',1,'']]],
+ ['1_20installation_2',['1. Installation',['../md_docs_2static_2usage.html#autotoc_md25',1,'']]],
+ ['1_20pypi_20release_3',['1.1 PyPI Release',['../md_docs_2static_2usage.html#autotoc_md26',1,'']]]
];
diff --git a/docs/html/search/all_1.js b/docs/html/search/all_1.js
index 29d7c127..8aacc801 100644
--- a/docs/html/search/all_1.js
+++ b/docs/html/search/all_1.js
@@ -1,22 +1,5 @@
var searchData=
[
- ['back_0',['BACK',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329ad8c6323fcc54dfc5319fbd935ae4f75d',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
- ['bare_1',['BARE',['../namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71',1,'gridfire::screening']]],
- ['barescreeningmodel_2',['BareScreeningModel',['../classgridfire_1_1screening_1_1_bare_screening_model.html',1,'gridfire::screening']]],
- ['base_5fnetwork_5ftoo_5fshallow_3',['BASE_NETWORK_TOO_SHALLOW',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e',1,'gridfire']]],
- ['basepartitiontype_4',['BasePartitionType',['../namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728c',1,'gridfire::partition']]],
- ['basepartitiontypetostring_5',['basePartitionTypeToString',['../namespacegridfire_1_1partition.html#a97237521bc760f7521346f8db472dc8e',1,'gridfire::partition']]],
- ['begin_6',['begin',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a4ae3806e5e1a802b86a6de292d043476',1,'gridfire::reaction::LogicalReaction::begin()'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a5d410de1053f8028faed1f0d0a6083f5',1,'gridfire::reaction::LogicalReaction::begin() const'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a87257704009fcd57b553f86cdaacb597',1,'gridfire::reaction::TemplatedReactionSet::begin()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#aee42bb25973dadc6629bdb5cb1db6369',1,'gridfire::reaction::TemplatedReactionSet::begin() const']]],
- ['bin_7',['bin',['../structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3',1,'gridfire::QSECacheKey']]],
- ['bindings_20and_20installation_8',['Python Bindings and Installation',['../index.html#autotoc_md7',1,'']]],
- ['bindings_2ecpp_9',['bindings.cpp',['../bindings_8cpp.html',1,'(Global Namespace)'],['../engine_2bindings_8cpp.html',1,'(Global Namespace)'],['../exceptions_2bindings_8cpp.html',1,'(Global Namespace)'],['../expectations_2bindings_8cpp.html',1,'(Global Namespace)'],['../io_2bindings_8cpp.html',1,'(Global Namespace)'],['../partition_2bindings_8cpp.html',1,'(Global Namespace)'],['../reaction_2bindings_8cpp.html',1,'(Global Namespace)'],['../screening_2bindings_8cpp.html',1,'(Global Namespace)'],['../solver_2bindings_8cpp.html',1,'(Global Namespace)'],['../types_2bindings_8cpp.html',1,'(Global Namespace)'],['../utils_2bindings_8cpp.html',1,'(Global Namespace)']]],
- ['bindings_2eh_10',['bindings.h',['../engine_2bindings_8h.html',1,'(Global Namespace)'],['../exceptions_2bindings_8h.html',1,'(Global Namespace)'],['../expectations_2bindings_8h.html',1,'(Global Namespace)'],['../io_2bindings_8h.html',1,'(Global Namespace)'],['../partition_2bindings_8h.html',1,'(Global Namespace)'],['../reaction_2bindings_8h.html',1,'(Global Namespace)'],['../screening_2bindings_8h.html',1,'(Global Namespace)'],['../solver_2bindings_8h.html',1,'(Global Namespace)'],['../types_2bindings_8h.html',1,'(Global Namespace)'],['../utils_2bindings_8h.html',1,'(Global Namespace)']]],
- ['bound_11',['bound',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a5f673ab0425f06f3639cc9b5200ee3af',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]],
- ['bounds_12',['Bounds',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
- ['build_20and_20installation_20instructions_13',['Build and Installation Instructions',['../index.html#autotoc_md2',1,'']]],
- ['build_5freaclib_5fnuclear_5fnetwork_14',['build_reaclib_nuclear_network',['../namespacegridfire.html#aedddb89e400a6111f69bfe0c3fd4214e',1,'gridfire::build_reaclib_nuclear_network(const fourdst::composition::Composition &composition, BuildDepthType maxLayers=NetworkBuildDepth::Full, bool reverse=false)'],['../namespacegridfire.html#a745c6568723947f8e1ff874c9d3f4733',1,'gridfire::build_reaclib_nuclear_network(const Composition &composition, BuildDepthType maxLayers, bool reverse)']]],
- ['buildconnectivitygraph_15',['buildConnectivityGraph',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aae0865e361dfeb23984d70409fdd9f39',1,'gridfire::MultiscalePartitioningEngineView::buildConnectivityGraph(const std::unordered_set< size_t > &fast_reaction_indices) const'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ae3875c61dc916c0982ed122c2e272d94',1,'gridfire::MultiscalePartitioningEngineView::buildConnectivityGraph(const std::vector< size_t > &species_pool) const']]],
- ['builddepthtype_16',['BuildDepthType',['../namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6',1,'gridfire']]],
- ['building_20the_20c_20library_17',['Building the C++ Library',['../index.html#autotoc_md5',1,'']]],
- ['building_2eh_18',['building.h',['../building_8h.html',1,'']]]
+ ['2_20development_20from_20source_0',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md27',1,'']]],
+ ['2_20why_20these_20engines_20and_20views_1',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md29',1,'']]]
];
diff --git a/docs/html/search/all_10.js b/docs/html/search/all_10.js
index 1ec9a110..e133edda 100644
--- a/docs/html/search/all_10.js
+++ b/docs/html/search/all_10.js
@@ -1,8 +1,12 @@
var searchData=
[
- ['qsecacheconfig_0',['QSECacheConfig',['../structgridfire_1_1_q_s_e_cache_config.html',1,'gridfire']]],
- ['qsecachekey_1',['QSECacheKey',['../structgridfire_1_1_q_s_e_cache_key.html',1,'gridfire::QSECacheKey'],['../structgridfire_1_1_q_s_e_cache_key.html#a3078528fc69b8e687448d3108a216c03',1,'gridfire::QSECacheKey::QSECacheKey()']]],
- ['qsegroup_2',['QSEGroup',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['qsepartition_3',['QSEPartition',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['qvalue_4',['qValue',['../structgridfire_1_1reaclib_1_1_reaction_record.html#aeeb8a1e078a27420e398663825cce644',1,'gridfire::reaclib::ReactionRecord::qValue'],['../classgridfire_1_1reaction_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8',1,'gridfire::reaction::Reaction::qValue()'],['../classgridfire_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8',1,'gridfire::Reaction::qValue()']]]
+ ['label_0',['label',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a2165deb1c0a54a5086b496cf34604fa5',1,'gridfire::reaclib::ReactionRecord']]],
+ ['library_1',['Library',['../index.html#autotoc_md5',1,'Building the C++ Library'],['../index.html#autotoc_md6',1,'Installing the Library']]],
+ ['logging_2ecpp_2',['logging.cpp',['../logging_8cpp.html',1,'']]],
+ ['logging_2eh_3',['logging.h',['../logging_8h.html',1,'']]],
+ ['logical_20flow_4',['Code Architecture and Logical Flow',['../index.html#autotoc_md9',1,'']]],
+ ['logicalreaction_5',['LogicalReaction',['../classgridfire_1_1reaction_1_1_logical_reaction.html',1,'gridfire::reaction::LogicalReaction'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a6965906ea33ebd0d615811219d9e9537',1,'gridfire::reaction::LogicalReaction::LogicalReaction()']]],
+ ['logicalreactionset_6',['LogicalReactionSet',['../namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31',1,'gridfire::reaction::LogicalReactionSet'],['../namespacegridfire.html#aa86f08712565f278adacc7cd2361eb31',1,'gridfire::LogicalReactionSet']]],
+ ['logmanager_7',['LogManager',['../classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103',1,'gridfire::AdaptiveEngineView::LogManager'],['../classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08',1,'gridfire::FileDefinedEngineView::LogManager'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de',1,'gridfire::io::SimpleReactionListFileParser::LogManager'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055',1,'gridfire::io::MESANetworkFileParser::LogManager']]],
+ ['lowerindex_8',['lowerIndex',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a2da59e4f6e2ba3eff581bacabbf387de',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]]
];
diff --git a/docs/html/search/all_11.js b/docs/html/search/all_11.js
index bde43aee..7e241f07 100644
--- a/docs/html/search/all_11.js
+++ b/docs/html/search/all_11.js
@@ -1,65 +1,118 @@
var searchData=
[
- ['rate_5ffit_0',['rate_fit',['../namespacegridfire_1_1approx8.html#aed8175751b4920a53922f87f8c0e63c4',1,'gridfire::approx8']]],
- ['ratecoefficients_1',['rateCoefficients',['../classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e',1,'gridfire::reaction::Reaction::rateCoefficients()'],['../classgridfire_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e',1,'gridfire::Reaction::rateCoefficients()']]],
- ['ratecoefficientset_2',['RateCoefficientSet',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html',1,'gridfire::reaction']]],
- ['rauscher_5fthielemann_5fpartition_5fdata_3',['rauscher_thielemann_partition_data',['../rauscher__thielemann__partition__data_8h.html#a7b9a54e9c58848fe3205479acd770ffd',1,'rauscher_thielemann_partition_data.h']]],
- ['rauscher_5fthielemann_5fpartition_5fdata_2eh_4',['rauscher_thielemann_partition_data.h',['../rauscher__thielemann__partition__data_8h.html',1,'']]],
- ['rauscher_5fthielemann_5fpartition_5fdata_5flen_5',['rauscher_thielemann_partition_data_len',['../rauscher__thielemann__partition__data_8h.html#a5240736f3bdb43cf2cd63464c5835df1',1,'rauscher_thielemann_partition_data.h']]],
- ['rauscher_5fthielemann_5fpartition_5fdata_5frecord_2eh_6',['rauscher_thielemann_partition_data_record.h',['../rauscher__thielemann__partition__data__record_8h.html',1,'']]],
- ['rauscherthielemann_7',['RauscherThielemann',['../namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728ca4ca5b5dcd7343b06b860f05f3bc454b1',1,'gridfire::partition']]],
- ['rauscherthielemannpartitiondatarecord_8',['RauscherThielemannPartitionDataRecord',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html',1,'gridfire::partition::record']]],
- ['rauscherthielemannpartitionfunction_9',['RauscherThielemannPartitionFunction',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html',1,'gridfire::partition::RauscherThielemannPartitionFunction'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c',1,'gridfire::partition::RauscherThielemannPartitionFunction::RauscherThielemannPartitionFunction()']]],
- ['raw_5freactions_5fdata_10',['raw_reactions_data',['../reactions__data_8h.html#aeb44e2b3b67960dfd83ecd7136c7d38b',1,'reactions_data.h']]],
- ['raw_5freactions_5fdata_5flen_11',['raw_reactions_data_len',['../reactions__data_8h.html#a32dea82d95667c3df395d58fb469ce2a',1,'reactions_data.h']]],
- ['reaclib_12',['REACLIB',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182',1,'gridfire']]],
- ['reaclib_2ecpp_13',['reaclib.cpp',['../reaclib_8cpp.html',1,'']]],
- ['reaclib_2eh_14',['reaclib.h',['../reaclib_8h.html',1,'']]],
- ['reactant_5fpowers_15',['reactant_powers',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275',1,'gridfire::GraphEngine::PrecomputedReaction']]],
- ['reactant_5fspecies_16',['reactant_species',['../classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923',1,'gridfire::reaction::Reaction::reactant_species()'],['../classgridfire_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923',1,'gridfire::Reaction::reactant_species()']]],
- ['reactants_17',['reactants',['../classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b',1,'gridfire::reaction::Reaction::reactants()'],['../classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b',1,'gridfire::Reaction::reactants()']]],
- ['reactants_5fstr_18',['reactants_str',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a67afc513db8dbcc43d79733e22ca8d39',1,'gridfire::reaclib::ReactionRecord']]],
- ['reaction_19',['Reaction',['../classgridfire_1_1_reaction.html',1,'gridfire::Reaction'],['../classgridfire_1_1reaction_1_1_reaction.html',1,'gridfire::reaction::Reaction'],['../classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c',1,'gridfire::reaction::Reaction::Reaction()'],['../classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c',1,'gridfire::Reaction::Reaction()']]],
- ['reaction_2ecpp_20',['reaction.cpp',['../reaction_8cpp.html',1,'']]],
- ['reaction_2eh_21',['reaction.h',['../reaction_8h.html',1,'']]],
- ['reaction_5findex_22',['reaction_index',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497',1,'gridfire::GraphEngine::PrecomputedReaction']]],
- ['reactionflow_23',['ReactionFlow',['../structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html',1,'gridfire::AdaptiveEngineView']]],
- ['reactionptr_24',['reactionPtr',['../structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a3bb21f20df8115d37108cf3c3be3bc6f',1,'gridfire::AdaptiveEngineView::ReactionFlow']]],
- ['reactionrecord_25',['ReactionRecord',['../structgridfire_1_1reaclib_1_1_reaction_record.html',1,'gridfire::reaclib']]],
- ['reactions_5fdata_2eh_26',['reactions_data.h',['../reactions__data_8h.html',1,'']]],
- ['reactionset_27',['ReactionSet',['../namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1',1,'gridfire::reaction::ReactionSet'],['../namespacegridfire.html#ad838ce3fb6cc02c3fd90b924a0dd91b1',1,'gridfire::ReactionSet']]],
- ['rebuild_28',['rebuild',['../classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf',1,'gridfire::DynamicEngine::rebuild()'],['../classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490',1,'gridfire::GraphEngine::rebuild()'],['../class_py_dynamic_engine.html#a3d30a9116825ab2c5c209bc2712126bc',1,'PyDynamicEngine::rebuild()']]],
- ['recordadtape_29',['recordADTape',['../classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889',1,'gridfire::GraphEngine']]],
- ['register_5fbase_5fengine_5fbindings_30',['register_base_engine_bindings',['../engine_2bindings_8cpp.html#a884aac3c3f2e8c62843c69329052d642',1,'register_base_engine_bindings(pybind11::module &m): bindings.cpp'],['../engine_2bindings_8h.html#a884aac3c3f2e8c62843c69329052d642',1,'register_base_engine_bindings(pybind11::module &m): bindings.cpp']]],
- ['register_5fcomposite_5fpartition_5fbindings_31',['register_composite_partition_bindings',['../partition_2bindings_8cpp.html#afded1a99d32cbf8745a42e0a81891e18',1,'register_composite_partition_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#afded1a99d32cbf8745a42e0a81891e18',1,'register_composite_partition_bindings(pybind11::module &m): bindings.cpp']]],
- ['register_5fengine_5fbindings_32',['register_engine_bindings',['../engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c',1,'register_engine_bindings(py::module &m): bindings.cpp'],['../engine_2bindings_8h.html#a73a2ec4150b3954550f16b97102ec993',1,'register_engine_bindings(pybind11::module &m): bindings.h']]],
- ['register_5fengine_5fview_5fbindings_33',['register_engine_view_bindings',['../engine_2bindings_8cpp.html#a74a027923ac27f235cf565f8d2a355bd',1,'register_engine_view_bindings(pybind11::module &m): bindings.cpp'],['../engine_2bindings_8h.html#a74a027923ac27f235cf565f8d2a355bd',1,'register_engine_view_bindings(pybind11::module &m): bindings.cpp']]],
- ['register_5fexception_5fbindings_34',['register_exception_bindings',['../exceptions_2bindings_8cpp.html#a15a0d54e4fe015a87d9f7a63284c2958',1,'register_exception_bindings(py::module &m): bindings.cpp'],['../exceptions_2bindings_8h.html#a01725278af607be0d8f5a2d892a5ef73',1,'register_exception_bindings(pybind11::module &m): bindings.h']]],
- ['register_5fexpectation_5fbindings_35',['register_expectation_bindings',['../expectations_2bindings_8cpp.html#ac6720822f6ad76636adbc1ae6febc2c2',1,'register_expectation_bindings(py::module &m): bindings.cpp'],['../expectations_2bindings_8h.html#a12e0304a6d29af179118a29c8ea93dc0',1,'register_expectation_bindings(pybind11::module &m): bindings.h']]],
- ['register_5fground_5fstate_5fpartition_5fbindings_36',['register_ground_state_partition_bindings',['../partition_2bindings_8cpp.html#ac36d0a5e8cb0122888fd218a143c7630',1,'register_ground_state_partition_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#ac36d0a5e8cb0122888fd218a143c7630',1,'register_ground_state_partition_bindings(pybind11::module &m): bindings.cpp']]],
- ['register_5fio_5fbindings_37',['register_io_bindings',['../io_2bindings_8cpp.html#a7f552627cbe94906e0ee98b121e77862',1,'register_io_bindings(py::module &m): bindings.cpp'],['../io_2bindings_8h.html#a1d91b8298302b9f5401bf06c22651df4',1,'register_io_bindings(pybind11::module &m): bindings.h']]],
- ['register_5fpartition_5fbindings_38',['register_partition_bindings',['../partition_2bindings_8cpp.html#a2806baaec82e0e6d66b80348584e08fd',1,'register_partition_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#a2806baaec82e0e6d66b80348584e08fd',1,'register_partition_bindings(pybind11::module &m): bindings.cpp']]],
- ['register_5fpartition_5ftypes_5fbindings_39',['register_partition_types_bindings',['../partition_2bindings_8cpp.html#a4c0db94b56a3b02482ac4fd654680cca',1,'register_partition_types_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#a4c0db94b56a3b02482ac4fd654680cca',1,'register_partition_types_bindings(pybind11::module &m): bindings.cpp']]],
- ['register_5frauscher_5fthielemann_5fpartition_5fbindings_40',['register_rauscher_thielemann_partition_bindings',['../partition_2bindings_8cpp.html#a4e56b30b36165067cf413787a55b9ecb',1,'register_rauscher_thielemann_partition_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#a4e56b30b36165067cf413787a55b9ecb',1,'register_rauscher_thielemann_partition_bindings(pybind11::module &m): bindings.cpp']]],
- ['register_5frauscher_5fthielemann_5fpartition_5fdata_5frecord_5fbindings_41',['register_rauscher_thielemann_partition_data_record_bindings',['../partition_2bindings_8cpp.html#ae405682b0e35624397583048f4d40f75',1,'register_rauscher_thielemann_partition_data_record_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#ae405682b0e35624397583048f4d40f75',1,'register_rauscher_thielemann_partition_data_record_bindings(pybind11::module &m): bindings.cpp']]],
- ['register_5freaction_5fbindings_42',['register_reaction_bindings',['../reaction_2bindings_8cpp.html#ae174b115814ec42920a799881cef1efa',1,'register_reaction_bindings(py::module &m): bindings.cpp'],['../reaction_2bindings_8h.html#a221d509fd54278898e2cbb73663f53d0',1,'register_reaction_bindings(pybind11::module &m): bindings.h']]],
- ['register_5fscreening_5fbindings_43',['register_screening_bindings',['../screening_2bindings_8cpp.html#a4fcef69d9382bfbc315cb061038627f4',1,'register_screening_bindings(py::module &m): bindings.cpp'],['../screening_2bindings_8h.html#a9e1a938ffee0a1b9d913fa4968865b1b',1,'register_screening_bindings(pybind11::module &m): bindings.h']]],
- ['register_5fsolver_5fbindings_44',['register_solver_bindings',['../solver_2bindings_8cpp.html#a8b1a9e2faca389d99c0b5feaa4262630',1,'register_solver_bindings(py::module &m): bindings.cpp'],['../solver_2bindings_8h.html#a426b11f75261b240dc9964f6774403bf',1,'register_solver_bindings(pybind11::module &m): bindings.h']]],
- ['register_5ftype_5fbindings_45',['register_type_bindings',['../types_2bindings_8cpp.html#a37d2e0b6a2605d063eec5e2a64e9bcc5',1,'register_type_bindings(pybind11::module &m): bindings.cpp'],['../types_2bindings_8h.html#a37d2e0b6a2605d063eec5e2a64e9bcc5',1,'register_type_bindings(pybind11::module &m): bindings.cpp']]],
- ['register_5futils_5fbindings_46',['register_utils_bindings',['../utils_2bindings_8cpp.html#a7af842f50ca4a721518e716d0229697c',1,'register_utils_bindings(py::module &m): bindings.cpp'],['../utils_2bindings_8h.html#a9eefca377142320755a869fafc6311c7',1,'register_utils_bindings(pybind11::module &m): bindings.h']]],
- ['related_20projects_47',['Related Projects',['../index.html#autotoc_md22',1,'']]],
- ['remove_5freaction_48',['remove_reaction',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a89c4c5af12aef7fbfc24316c88237e22',1,'gridfire::reaction::TemplatedReactionSet']]],
- ['reporting_2eh_49',['reporting.h',['../reporting_8h.html',1,'']]],
- ['rescueedgespeciesdestructionchannel_50',['rescueEdgeSpeciesDestructionChannel',['../classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f',1,'gridfire::AdaptiveEngineView']]],
- ['rescueset_51',['RescueSet',['../classgridfire_1_1_adaptive_engine_view.html#a4ff60b5214ec0bdaf683feb6615573a5',1,'gridfire::AdaptiveEngineView']]],
- ['reservejacobianmatrix_52',['reserveJacobianMatrix',['../classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5',1,'gridfire::GraphEngine']]],
- ['rev_5fsparse_5fjac_53',['rev_sparse_jac',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4',1,'gridfire::GraphEngine::AtomicReverseRate']]],
- ['reverse_54',['reverse',['../structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd',1,'gridfire::reaclib::ReactionRecord::reverse'],['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e',1,'gridfire::GraphEngine::AtomicReverseRate::reverse()']]],
- ['reverse_5fsymmetry_5ffactor_55',['reverse_symmetry_factor',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6bcfe2230dd54b088180d34389266b07',1,'gridfire::GraphEngine::PrecomputedReaction']]],
- ['rho_5ftol_56',['rho_tol',['../structgridfire_1_1_q_s_e_cache_config.html#a57b7ca68463aa9b78007e5cf35ebf7ce',1,'gridfire::QSECacheConfig']]],
- ['rhsfunctor_57',['RHSFunctor',['../struct_r_h_s_functor.html',1,'']]],
- ['rhsmanager_58',['RHSManager',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html',1,'gridfire::solver::DirectNetworkSolver::RHSManager'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#affaaa55fc49d85e5de73f3a6ad5da7c0',1,'gridfire::solver::DirectNetworkSolver::RHSManager::RHSManager()']]],
- ['rosenbrock_20method_59',['DirectNetworkSolver (Implicit Rosenbrock Method)',['../index.html#autotoc_md14',1,'']]],
- ['rpname_60',['rpName',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a523b7cfb0a6d8ddccd785aef2f425ad1',1,'gridfire::reaclib::ReactionRecord']]],
- ['rt_5ftemperature_5fgrid_5ft9_61',['RT_TEMPERATURE_GRID_T9',['../namespacegridfire_1_1partition.html#a1e08a3c20c55bc6fa4a4ecdf7ea57b8f',1,'gridfire::partition']]]
+ ['m_5factivereactionindices_0',['m_activeReactionIndices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['m_5factivereactions_1',['m_activeReactions',['../classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800',1,'gridfire::AdaptiveEngineView::m_activeReactions'],['../classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965',1,'gridfire::DefinedEngineView::m_activeReactions']]],
+ ['m_5factivespecies_2',['m_activeSpecies',['../classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940',1,'gridfire::AdaptiveEngineView::m_activeSpecies'],['../classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae',1,'gridfire::DefinedEngineView::m_activeSpecies']]],
+ ['m_5factivespeciesindices_3',['m_activeSpeciesIndices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['m_5falgebraic_5fspecies_4',['m_algebraic_species',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['m_5falgebraic_5fspecies_5findices_5',['m_algebraic_species_indices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a53862719dd73f98bc69eecde090cf655',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['m_5fatomicreverserates_6',['m_atomicReverseRates',['../classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6',1,'gridfire::GraphEngine']]],
+ ['m_5fbaseengine_7',['m_baseEngine',['../classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8',1,'gridfire::AdaptiveEngineView::m_baseEngine'],['../classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195',1,'gridfire::DefinedEngineView::m_baseEngine'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93',1,'gridfire::MultiscalePartitioningEngineView::m_baseEngine']]],
+ ['m_5fcacheconfig_8',['m_cacheConfig',['../structgridfire_1_1_q_s_e_cache_key.html#a711acccecadd93495fd08c81838be2d8',1,'gridfire::QSECacheKey']]],
+ ['m_5fcached_5fresult_9',['m_cached_result',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
+ ['m_5fcached_5ftime_10',['m_cached_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a17b83f2478395c934c4ec2c964e9d35e',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
+ ['m_5fcachestats_11',['m_cacheStats',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['m_5fchapter_12',['m_chapter',['../classgridfire_1_1reaction_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b',1,'gridfire::reaction::Reaction::m_chapter'],['../classgridfire_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b',1,'gridfire::Reaction::m_chapter']]],
+ ['m_5fconfig_13',['m_config',['../classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18',1,'gridfire::GraphEngine::m_config'],['../classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30',1,'gridfire::AdaptiveEngineView::m_config'],['../classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362',1,'gridfire::FileDefinedEngineView::m_config'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874',1,'gridfire::io::SimpleReactionListFileParser::m_config'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d',1,'gridfire::io::MESANetworkFileParser::m_config'],['../classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09',1,'gridfire::Network::m_config'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a2cc12e737a753a42b72a45be3fbfa8ab',1,'gridfire::solver::DirectNetworkSolver::m_config']]],
+ ['m_5fconstants_14',['m_constants',['../classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e',1,'gridfire::GraphEngine::m_constants'],['../classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410',1,'gridfire::Network::m_constants']]],
+ ['m_5fdepth_15',['m_depth',['../classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01',1,'gridfire::GraphEngine']]],
+ ['m_5fdt0_16',['m_dt0',['../classgridfire_1_1approx8_1_1_approx8_network.html#a6ed8022834e9541b3e547dd867648b0f',1,'gridfire::approx8::Approx8Network']]],
+ ['m_5fdynamic_5fspecies_17',['m_dynamic_species',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['m_5fdynamic_5fspecies_5findices_18',['m_dynamic_species_indices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a38b4f0373c3bd81503889650c0bb69bb',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['m_5fengine_19',['m_engine',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d',1,'gridfire::GraphEngine::AtomicReverseRate::m_engine'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8',1,'gridfire::solver::NetworkSolverStrategy::m_engine'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a035962dfdfc13d255def98befefcccd9',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_engine'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_engine']]],
+ ['m_5feps_5fnuc_20',['m_eps_nuc',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a24207163a7ea2dde675b458f9df37a99',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
+ ['m_5ffilename_21',['m_fileName',['../classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b',1,'gridfire::FileDefinedEngineView']]],
+ ['m_5ffilename_22',['m_filename',['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099',1,'gridfire::io::MESANetworkFileParser']]],
+ ['m_5fformat_23',['m_format',['../classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18',1,'gridfire::Network']]],
+ ['m_5ffull_5fjacobian_5fsparsity_5fpattern_24',['m_full_jacobian_sparsity_pattern',['../classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06',1,'gridfire::GraphEngine']]],
+ ['m_5fground_5fstate_5fspin_25',['m_ground_state_spin',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245',1,'gridfire::partition::GroundStatePartitionFunction']]],
+ ['m_5fhash_26',['m_hash',['../structgridfire_1_1_q_s_e_cache_key.html#ab860b40d4ccb3c16a962d96bc767ff05',1,'gridfire::QSECacheKey']]],
+ ['m_5fhit_27',['m_hit',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a0c3bd8d5918e344657227a09cd7e39a5',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+ ['m_5fid_28',['m_id',['../classgridfire_1_1reaction_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b',1,'gridfire::reaction::Reaction::m_id'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5fda3af5ea9ae0ecfb60a61a9e07f5b4',1,'gridfire::reaction::TemplatedReactionSet::m_id'],['../classgridfire_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b',1,'gridfire::Reaction::m_id']]],
+ ['m_5findex_29',['m_index',['../structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e',1,'gridfire::expectations::EngineIndexError']]],
+ ['m_5fisstale_30',['m_isStale',['../classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e',1,'gridfire::AdaptiveEngineView::m_isStale'],['../classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382',1,'gridfire::DefinedEngineView::m_isStale']]],
+ ['m_5fjac_5fwork_31',['m_jac_work',['../classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891',1,'gridfire::GraphEngine']]],
+ ['m_5fjacobianmatrix_32',['m_jacobianMatrix',['../classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910',1,'gridfire::GraphEngine']]],
+ ['m_5flast_5fobserved_5ftime_33',['m_last_observed_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a49268e65b89444c3caf1e69323ce545b',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
+ ['m_5flast_5fstep_5ftime_34',['m_last_step_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a69d773a1cfe4804876dbf23de1f212c9',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
+ ['m_5flogger_35',['m_logger',['../classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53',1,'gridfire::GraphEngine::m_logger'],['../classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193',1,'gridfire::AdaptiveEngineView::m_logger'],['../classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3',1,'gridfire::DefinedEngineView::m_logger'],['../classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432',1,'gridfire::FileDefinedEngineView::m_logger'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a',1,'gridfire::MultiscalePartitioningEngineView::m_logger'],['../classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d',1,'gridfire::NetworkPrimingEngineView::m_logger'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66',1,'gridfire::io::SimpleReactionListFileParser::m_logger'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937',1,'gridfire::io::MESANetworkFileParser::m_logger'],['../classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5',1,'gridfire::Network::m_logger'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b',1,'gridfire::partition::CompositePartitionFunction::m_logger'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b',1,'gridfire::partition::GroundStatePartitionFunction::m_logger'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6',1,'gridfire::partition::RauscherThielemannPartitionFunction::m_logger'],['../classgridfire_1_1reaction_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4',1,'gridfire::reaction::Reaction::m_logger'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac6fcc5b08938b73ff6dac680e5bf28d9',1,'gridfire::reaction::TemplatedReactionSet::m_logger'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f',1,'gridfire::screening::WeakScreeningModel::m_logger'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a6cc605a83b5ac5ae048d1044be284ada',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_logger'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079',1,'gridfire::solver::DirectNetworkSolver::m_logger'],['../classgridfire_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4',1,'gridfire::Reaction::m_logger']]],
+ ['m_5flogmanager_36',['m_logManager',['../classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16',1,'gridfire::Network']]],
+ ['m_5fmessage_37',['m_message',['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb',1,'gridfire::exceptions::StaleEngineError::m_message'],['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a77c9a660a2748c2e3a1c7e94edad1cf0',1,'gridfire::exceptions::FailedToPartitionEngineError::m_message'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a581527fc03fdd84a8309c147259ec09d',1,'gridfire::exceptions::NetworkResizedError::m_message'],['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047',1,'gridfire::exceptions::UnableToSetNetworkReactionsError::m_message'],['../structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc',1,'gridfire::expectations::EngineError::m_message']]],
+ ['m_5fmiss_38',['m_miss',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a73ca615753553f4a85160bd9f166da5b',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+ ['m_5fnetworkspecies_39',['m_networkSpecies',['../classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc',1,'gridfire::GraphEngine']]],
+ ['m_5fnetworkspeciesmap_40',['m_networkSpeciesMap',['../classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827',1,'gridfire::GraphEngine']]],
+ ['m_5fnum_5fsteps_41',['m_num_steps',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
+ ['m_5foperatorhits_42',['m_operatorHits',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac18229250c4c160aada96e19325faa29',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+ ['m_5foperatormisses_43',['m_operatorMisses',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+ ['m_5fparser_44',['m_parser',['../classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500',1,'gridfire::FileDefinedEngineView']]],
+ ['m_5fpartitiondata_45',['m_partitionData',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a50ce19df4c12e22bbcb61422248a4038',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+ ['m_5fpartitionfunction_46',['m_partitionFunction',['../classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e',1,'gridfire::GraphEngine']]],
+ ['m_5fpartitionfunctions_47',['m_partitionFunctions',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8',1,'gridfire::partition::CompositePartitionFunction']]],
+ ['m_5fpename_48',['m_peName',['../classgridfire_1_1reaction_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248',1,'gridfire::reaction::Reaction::m_peName'],['../classgridfire_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248',1,'gridfire::Reaction::m_peName']]],
+ ['m_5fprecomputedreactions_49',['m_precomputedReactions',['../classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3',1,'gridfire::GraphEngine']]],
+ ['m_5fprimingspecies_50',['m_primingSpecies',['../classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5',1,'gridfire::NetworkPrimingEngineView']]],
+ ['m_5fproducts_51',['m_products',['../classgridfire_1_1reaction_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e',1,'gridfire::reaction::Reaction::m_products'],['../classgridfire_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e',1,'gridfire::Reaction::m_products']]],
+ ['m_5fqse_5fabundance_5fcache_52',['m_qse_abundance_cache',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['m_5fqse_5fgroups_53',['m_qse_groups',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['m_5fqse_5fsolve_5findices_54',['m_qse_solve_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4eb11e99dc2a7e038d815bf7c6bd0be8',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+ ['m_5fqvalue_55',['m_qValue',['../classgridfire_1_1reaction_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b',1,'gridfire::reaction::Reaction::m_qValue'],['../classgridfire_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b',1,'gridfire::Reaction::m_qValue']]],
+ ['m_5fratecoefficients_56',['m_rateCoefficients',['../classgridfire_1_1reaction_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72',1,'gridfire::reaction::Reaction::m_rateCoefficients'],['../classgridfire_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72',1,'gridfire::Reaction::m_rateCoefficients']]],
+ ['m_5frates_57',['m_rates',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a81f75f0085f8a5a45169f0b7240c809d',1,'gridfire::reaction::LogicalReaction']]],
+ ['m_5freactants_58',['m_reactants',['../classgridfire_1_1reaction_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11',1,'gridfire::reaction::Reaction::m_reactants'],['../classgridfire_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11',1,'gridfire::Reaction::m_reactants']]],
+ ['m_5freaction_59',['m_reaction',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a98ed8b450f7868f55e8362a848a4710d',1,'gridfire::GraphEngine::AtomicReverseRate']]],
+ ['m_5freactionidmap_60',['m_reactionIDMap',['../classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3',1,'gridfire::GraphEngine']]],
+ ['m_5freactionindexmap_61',['m_reactionIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de',1,'gridfire::AdaptiveEngineView::m_reactionIndexMap'],['../classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd',1,'gridfire::DefinedEngineView::m_reactionIndexMap']]],
+ ['m_5freactionnamemap_62',['m_reactionNameMap',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a3a4c2448865580001fd3c797b9f56979',1,'gridfire::reaction::TemplatedReactionSet']]],
+ ['m_5freactions_63',['m_reactions',['../classgridfire_1_1_graph_engine.html#acb7c4f5108b0efeae48ad15598e808c3',1,'gridfire::GraphEngine::m_reactions'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5962968fe478c79250e9d88d80a87600',1,'gridfire::reaction::TemplatedReactionSet::m_reactions']]],
+ ['m_5freverse_64',['m_reverse',['../classgridfire_1_1reaction_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9',1,'gridfire::reaction::Reaction::m_reverse'],['../classgridfire_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9',1,'gridfire::Reaction::m_reverse']]],
+ ['m_5frho_65',['m_rho',['../structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63',1,'gridfire::QSECacheKey::m_rho'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::m_rho'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44',1,'gridfire::exceptions::StaleEngineTrigger::state::m_rho'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_rho'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_rho']]],
+ ['m_5frhsadfun_66',['m_rhsADFun',['../classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876',1,'gridfire::GraphEngine']]],
+ ['m_5fscreeningmodel_67',['m_screeningModel',['../classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210',1,'gridfire::GraphEngine']]],
+ ['m_5fscreeningtype_68',['m_screeningType',['../classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80',1,'gridfire::GraphEngine']]],
+ ['m_5fsourcelabel_69',['m_sourceLabel',['../classgridfire_1_1reaction_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6',1,'gridfire::reaction::Reaction::m_sourceLabel'],['../classgridfire_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6',1,'gridfire::Reaction::m_sourceLabel']]],
+ ['m_5fsources_70',['m_sources',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a7fe91d24e20ebc76d612f6ad742f476f',1,'gridfire::reaction::LogicalReaction']]],
+ ['m_5fspecies_5fcache_71',['m_species_cache',['../class_py_engine.html#a73caaa7606e2cdfd1aa82729a78ebb73',1,'PyEngine::m_species_cache'],['../class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03',1,'PyDynamicEngine::m_species_cache']]],
+ ['m_5fspeciesindexmap_72',['m_speciesIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093',1,'gridfire::AdaptiveEngineView::m_speciesIndexMap'],['../classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e',1,'gridfire::DefinedEngineView::m_speciesIndexMap']]],
+ ['m_5fspeciestoindexmap_73',['m_speciesToIndexMap',['../classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7',1,'gridfire::GraphEngine']]],
+ ['m_5fstate_74',['m_state',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a7f9fa2e34da3772714723ef7d5083be5',1,'gridfire::exceptions::StaleEngineTrigger']]],
+ ['m_5fstiff_75',['m_stiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#a697cb49bebc8d0659eb791500c451c67',1,'gridfire::approx8::Approx8Network::m_stiff'],['../classgridfire_1_1_network.html#aefe364ae5af783e19e7b93bfd475566e',1,'gridfire::Network::m_stiff']]],
+ ['m_5fstoichiometrymatrix_76',['m_stoichiometryMatrix',['../classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24',1,'gridfire::GraphEngine']]],
+ ['m_5ft_77',['m_t',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a352cd33629e63286808df617d36cb70b',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
+ ['m_5ft9_78',['m_T9',['../structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7',1,'gridfire::QSECacheKey::m_T9'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::m_T9'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963',1,'gridfire::exceptions::StaleEngineTrigger::state::m_T9'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_T9'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_T9']]],
+ ['m_5ftmax_79',['m_tMax',['../classgridfire_1_1approx8_1_1_approx8_network.html#a6fadf388f07c160f1887a3cb72eaa869',1,'gridfire::approx8::Approx8Network']]],
+ ['m_5ftotal_5fsteps_80',['m_total_steps',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#ac1cddf0f2955d4282afcf4a90a2de9c0',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
+ ['m_5fuseprecomputation_81',['m_usePrecomputation',['../classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de',1,'gridfire::GraphEngine']]],
+ ['m_5fusereversereactions_82',['m_useReverseReactions',['../classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc',1,'gridfire::GraphEngine']]],
+ ['m_5fview_83',['m_view',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+ ['m_5fy_84',['m_Y',['../structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a',1,'gridfire::QSECacheKey::m_Y'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf',1,'gridfire::exceptions::StaleEngineTrigger::state::m_Y']]],
+ ['m_5fy_85',['m_y',['../classgridfire_1_1approx8_1_1_approx8_network.html#abf9f13ff532917ddac4a7d987698836d',1,'gridfire::approx8::Approx8Network']]],
+ ['m_5fy_5ffull_5finitial_86',['m_Y_full_initial',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3bc901d2d8234d1f61e94d0fe0777f7d',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+ ['m_5fy_5fscale_87',['m_Y_scale',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+ ['mainpage_2emd_88',['mainpage.md',['../mainpage_8md.html',1,'']]],
+ ['make_5fkey_89',['make_key',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a99c80e2f4ba36e88e08e2abd650a08fb',1,'gridfire::partition::GroundStatePartitionFunction::make_key()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec',1,'gridfire::partition::RauscherThielemannPartitionFunction::make_key()']]],
+ ['mapculledtofull_90',['mapCulledToFull',['../classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1',1,'gridfire::AdaptiveEngineView']]],
+ ['mapculledtofullreactionindex_91',['mapCulledToFullReactionIndex',['../classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101',1,'gridfire::AdaptiveEngineView']]],
+ ['mapculledtofullspeciesindex_92',['mapCulledToFullSpeciesIndex',['../classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8',1,'gridfire::AdaptiveEngineView']]],
+ ['mapfulltoculled_93',['mapFullToCulled',['../classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44',1,'gridfire::AdaptiveEngineView']]],
+ ['mapfulltoview_94',['mapFullToView',['../classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873',1,'gridfire::DefinedEngineView']]],
+ ['mapnetintomolarabundancevector_95',['mapNetInToMolarAbundanceVector',['../classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a',1,'gridfire::DynamicEngine::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f',1,'gridfire::GraphEngine::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019',1,'gridfire::AdaptiveEngineView::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2',1,'gridfire::DefinedEngineView::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0',1,'gridfire::MultiscalePartitioningEngineView::mapNetInToMolarAbundanceVector()'],['../class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac',1,'PyDynamicEngine::mapNetInToMolarAbundanceVector()']]],
+ ['mapviewtofull_96',['mapViewToFull',['../classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843',1,'gridfire::DefinedEngineView']]],
+ ['mapviewtofullreactionindex_97',['mapViewToFullReactionIndex',['../classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1',1,'gridfire::DefinedEngineView']]],
+ ['mapviewtofullspeciesindex_98',['mapViewToFullSpeciesIndex',['../classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a',1,'gridfire::DefinedEngineView']]],
+ ['massfractionchanges_99',['massFractionChanges',['../structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7',1,'gridfire::PrimingReport']]],
+ ['matrix_5ftype_100',['matrix_type',['../namespacegridfire_1_1approx8.html#a275aecf94e3145c2ff3d1756deda54ce',1,'gridfire::approx8']]],
+ ['max_5fiterations_5freached_101',['MAX_ITERATIONS_REACHED',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287',1,'gridfire']]],
+ ['mean_5ftimescale_102',['mean_timescale',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+ ['mesanetworkfileparser_103',['MESANetworkFileParser',['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html',1,'gridfire::io::MESANetworkFileParser'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c',1,'gridfire::io::MESANetworkFileParser::MESANetworkFileParser()']]],
+ ['method_104',['DirectNetworkSolver (Implicit Rosenbrock Method)',['../index.html#autotoc_md14',1,'']]],
+ ['middle_105',['MIDDLE',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+ ['min_5fabundance_5fthreshold_106',['MIN_ABUNDANCE_THRESHOLD',['../namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06',1,'gridfire']]],
+ ['min_5fdensity_5fthreshold_107',['MIN_DENSITY_THRESHOLD',['../namespacegridfire.html#ada3c137c014ecd8d06200fea2d1a9f50',1,'gridfire']]],
+ ['min_5fjacobian_5fthreshold_108',['MIN_JACOBIAN_THRESHOLD',['../namespacegridfire.html#ae01b1738df1921db565bcbd68dd6cf64',1,'gridfire']]],
+ ['mion_109',['mIon',['../structgridfire_1_1approx8_1_1_approx8_net.html#a928b7810cb2993d59d40aa73c2faef18',1,'gridfire::approx8::Approx8Net']]],
+ ['miss_110',['miss',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac55fb580dd4b9763cefe4612555b03f3',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+ ['misses_111',['misses',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5df4f2c27e9eaa781c972a8c9b595787',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+ ['molarabundance_112',['MolarAbundance',['../structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65',1,'gridfire::NetIn']]],
+ ['multiscalepartitioningengineview_113',['MultiscalePartitioningEngineView',['../classgridfire_1_1_multiscale_partitioning_engine_view.html',1,'gridfire::MultiscalePartitioningEngineView'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f',1,'gridfire::MultiscalePartitioningEngineView::MultiscalePartitioningEngineView()']]],
+ ['multiscalepartitioningengineview_20example_114',['MultiscalePartitioningEngineView Example',['../engine_8h.html#MultiscalePartitioningEngineViewExample',1,'']]]
];
diff --git a/docs/html/search/all_12.js b/docs/html/search/all_12.js
index 9202c867..8ecd05a1 100644
--- a/docs/html/search/all_12.js
+++ b/docs/html/search/all_12.js
@@ -1,58 +1,36 @@
var searchData=
[
- ['s_5fall_5freaclib_5freactions_5fptr_0',['s_all_reaclib_reactions_ptr',['../namespacegridfire_1_1reaclib.html#a5dba5efc372d2a9e9e846dfd6563f3c0',1,'gridfire::reaclib']]],
- ['s_5fdebug_1',['s_debug',['../namespacegridfire.html#afd6f117eb2da3bab3873edc09d0926cf',1,'gridfire']]],
- ['s_5finitialized_2',['s_initialized',['../namespacegridfire_1_1reaclib.html#af6ff0dfe7ffe34c73ba9acbab5ef8a66',1,'gridfire::reaclib']]],
- ['s_5foperator_5fparens_5fcalled_3',['s_operator_parens_called',['../namespacegridfire.html#a8b632637f62614f509cde0e404a79054',1,'gridfire']]],
- ['screening_2eh_4',['screening.h',['../screening_8h.html',1,'']]],
- ['screening_5fabstract_2eh_5',['screening_abstract.h',['../screening__abstract_8h.html',1,'']]],
- ['screening_5fbare_2ecpp_6',['screening_bare.cpp',['../screening__bare_8cpp.html',1,'']]],
- ['screening_5fbare_2eh_7',['screening_bare.h',['../screening__bare_8h.html',1,'']]],
- ['screening_5ftypes_2ecpp_8',['screening_types.cpp',['../screening__types_8cpp.html',1,'']]],
- ['screening_5ftypes_2eh_9',['screening_types.h',['../screening__types_8h.html',1,'']]],
- ['screening_5fweak_2ecpp_10',['screening_weak.cpp',['../screening__weak_8cpp.html',1,'']]],
- ['screening_5fweak_2eh_11',['screening_weak.h',['../screening__weak_8h.html',1,'']]],
- ['screeningmodel_12',['ScreeningModel',['../classgridfire_1_1screening_1_1_screening_model.html',1,'gridfire::screening']]],
- ['screeningtype_13',['ScreeningType',['../namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25',1,'gridfire::screening']]],
- ['secondorder_14',['SecondOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a264572d66aed5373d19dc80c7cde1f46',1,'gridfire']]],
- ['seed_5findices_15',['seed_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
- ['selectpartitionfunction_16',['selectPartitionFunction',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b',1,'gridfire::partition::CompositePartitionFunction']]],
- ['selectscreeningmodel_17',['selectScreeningModel',['../namespacegridfire_1_1screening.html#a6ca8556d27ac373e176f5b23437c416e',1,'gridfire::screening']]],
- ['setformat_18',['setFormat',['../classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4',1,'gridfire::Network']]],
- ['setnetworkreactions_19',['setNetworkReactions',['../classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f',1,'gridfire::DynamicEngine::setNetworkReactions()'],['../classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0',1,'gridfire::GraphEngine::setNetworkReactions()'],['../classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672',1,'gridfire::AdaptiveEngineView::setNetworkReactions()'],['../classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d',1,'gridfire::DefinedEngineView::setNetworkReactions()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#acb5fa7f03cd89b8c1b6b9ffdf3abb12e',1,'gridfire::MultiscalePartitioningEngineView::setNetworkReactions()'],['../class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6',1,'PyDynamicEngine::setNetworkReactions()']]],
- ['setprecomputation_20',['setPrecomputation',['../classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1',1,'gridfire::GraphEngine']]],
- ['setscreeningmodel_21',['setScreeningModel',['../classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd',1,'gridfire::DynamicEngine::setScreeningModel()'],['../classgridfire_1_1_graph_engine.html#a8110e687844f921438bb517e1d8ce62f',1,'gridfire::GraphEngine::setScreeningModel()'],['../classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b',1,'gridfire::AdaptiveEngineView::setScreeningModel()'],['../classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258',1,'gridfire::DefinedEngineView::setScreeningModel()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f',1,'gridfire::MultiscalePartitioningEngineView::setScreeningModel()'],['../class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac',1,'PyDynamicEngine::setScreeningModel()']]],
- ['setstiff_22',['setStiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#aefed972081514c29cdaaa1efd857ad8d',1,'gridfire::approx8::Approx8Network::setStiff()'],['../classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe',1,'gridfire::Network::setStiff()']]],
- ['setusereversereactions_23',['setUseReverseReactions',['../classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197',1,'gridfire::GraphEngine']]],
- ['shallow_24',['Shallow',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a928d0f1285ee7d36c1c2fa1b1b7a164c',1,'gridfire']]],
- ['simplereactionlistfileparser_25',['SimpleReactionListFileParser',['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html',1,'gridfire::io::SimpleReactionListFileParser'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993',1,'gridfire::io::SimpleReactionListFileParser::SimpleReactionListFileParser()']]],
- ['size_26',['size',['../classgridfire_1_1reaction_1_1_logical_reaction.html#afa41050855b842c63db16c94d2e9b897',1,'gridfire::reaction::LogicalReaction::size()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2',1,'gridfire::reaction::TemplatedReactionSet::size()']]],
- ['solveqseabundances_27',['solveQSEAbundances',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c5fcb8e3396d74359fd601554c9ffa9',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['solver_20implementations_28',['Future Solver Implementations',['../index.html#autotoc_md16',1,'']]],
- ['solver_20strategies_29',['Numerical Solver Strategies',['../index.html#autotoc_md13',1,'']]],
- ['solver_2ecpp_30',['solver.cpp',['../solver_8cpp.html',1,'']]],
- ['solver_2eh_31',['solver.h',['../solver_8h.html',1,'']]],
- ['sourcelabel_32',['sourceLabel',['../classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0',1,'gridfire::reaction::Reaction::sourceLabel()'],['../classgridfire_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0',1,'gridfire::Reaction::sourceLabel()']]],
- ['sources_33',['sources',['../classgridfire_1_1reaction_1_1_logical_reaction.html#add094eda0e71126f8443698d7f3317f4',1,'gridfire::reaction::LogicalReaction']]],
- ['sparsitypattern_34',['SparsityPattern',['../namespacegridfire.html#a898dfe22579e649935645cbd6f073178',1,'gridfire']]],
- ['species_5findices_35',['species_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
- ['stale_36',['STALE',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca4d855a061b3066dc14a3b12ed26b5456',1,'gridfire::expectations']]],
- ['staleengineerror_37',['StaleEngineError',['../classgridfire_1_1exceptions_1_1_stale_engine_error.html',1,'gridfire::exceptions::StaleEngineError'],['../structgridfire_1_1expectations_1_1_stale_engine_error.html',1,'gridfire::expectations::StaleEngineError'],['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50',1,'gridfire::exceptions::StaleEngineError::StaleEngineError()'],['../structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10',1,'gridfire::expectations::StaleEngineError::StaleEngineError()']]],
- ['staleengineerrortypes_38',['StaleEngineErrorTypes',['../namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7',1,'gridfire::expectations']]],
- ['staleenginetrigger_39',['StaleEngineTrigger',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html',1,'gridfire::exceptions::StaleEngineTrigger'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d',1,'gridfire::exceptions::StaleEngineTrigger::StaleEngineTrigger()']]],
- ['staletype_40',['staleType',['../structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590',1,'gridfire::expectations::StaleEngineError']]],
- ['state_41',['state',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html',1,'gridfire::exceptions::StaleEngineTrigger']]],
- ['status_42',['status',['../structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d',1,'gridfire::PrimingReport']]],
- ['std_43',['std',['../namespacestd.html',1,'']]],
- ['stepderivatives_44',['StepDerivatives',['../structgridfire_1_1_step_derivatives.html',1,'gridfire']]],
- ['stoichiometric_5fcoefficients_45',['stoichiometric_coefficients',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c',1,'gridfire::GraphEngine::PrecomputedReaction']]],
- ['stoichiometry_46',['stoichiometry',['../classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac',1,'gridfire::reaction::Reaction::stoichiometry(const fourdst::atomic::Species &species) const'],['../classgridfire_1_1reaction_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3',1,'gridfire::reaction::Reaction::stoichiometry() const'],['../classgridfire_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac',1,'gridfire::Reaction::stoichiometry(const fourdst::atomic::Species &species) const'],['../classgridfire_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3',1,'gridfire::Reaction::stoichiometry() const']]],
- ['strategies_47',['Numerical Solver Strategies',['../index.html#autotoc_md13',1,'']]],
- ['stringtobasepartitiontype_48',['stringToBasePartitionType',['../namespacegridfire_1_1partition.html#a84de6308486d35ce8bc1a9dea52dfa4a',1,'gridfire::partition']]],
- ['success_49',['success',['../structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3',1,'gridfire::PrimingReport']]],
- ['sum_5fproduct_50',['sum_product',['../namespacegridfire_1_1approx8.html#aafd24448743672021dd4507316060817',1,'gridfire::approx8']]],
- ['supports_51',['supports',['../classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c',1,'gridfire::partition::CompositePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5',1,'gridfire::partition::PartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd',1,'gridfire::partition::GroundStatePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5',1,'gridfire::partition::RauscherThielemannPartitionFunction::supports()'],['../class_py_partition_function.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8',1,'PyPartitionFunction::supports()']]],
- ['symmetry_5ffactor_52',['symmetry_factor',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e',1,'gridfire::GraphEngine::PrecomputedReaction']]],
- ['syncinternalmaps_53',['syncInternalMaps',['../classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f',1,'gridfire::GraphEngine']]],
- ['system_5fresized_54',['SYSTEM_RESIZED',['../namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7a109aa03c8823fcc0ab193b7e48664cbf',1,'gridfire::expectations']]]
+ ['n14a_5frate_0',['n14a_rate',['../namespacegridfire_1_1approx8.html#a3a9861a77093effdfc061743eb13fcdb',1,'gridfire::approx8']]],
+ ['n14p_5frate_1',['n14p_rate',['../namespacegridfire_1_1approx8.html#a34f18b2345a8fd8d96bbe1a9825c1f21',1,'gridfire::approx8']]],
+ ['n15pa_5frate_2',['n15pa_rate',['../namespacegridfire_1_1approx8.html#a9a90b83dd4aa2dcc928bd14f4678dcef',1,'gridfire::approx8']]],
+ ['n15pg_5ffrac_3',['n15pg_frac',['../namespacegridfire_1_1approx8.html#ac309c160c806208bf01bebeb29c23896',1,'gridfire::approx8']]],
+ ['n15pg_5frate_4',['n15pg_rate',['../namespacegridfire_1_1approx8.html#acdbb3ee2ef22bfd9c836324285d0da98',1,'gridfire::approx8']]],
+ ['na_5',['Na',['../structgridfire_1_1_graph_engine_1_1constants.html#a5ccc874d6704615e0ce54c14dc67699d',1,'gridfire::GraphEngine::constants']]],
+ ['ne20a_5frate_6',['ne20a_rate',['../namespacegridfire_1_1approx8.html#ad7a6f894fa4bdeebb4cae0eba3b2c210',1,'gridfire::approx8']]],
+ ['netin_7',['NetIn',['../structgridfire_1_1_net_in.html',1,'gridfire']]],
+ ['netout_8',['NetOut',['../structgridfire_1_1_net_out.html',1,'gridfire']]],
+ ['network_9',['Network',['../classgridfire_1_1_network.html',1,'gridfire::Network'],['../classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55',1,'gridfire::Network::Network()']]],
+ ['network_20view_10',['C++ Example: Adaptive Network View',['../index.html#autotoc_md19',1,'']]],
+ ['network_2ecpp_11',['network.cpp',['../network_8cpp.html',1,'']]],
+ ['network_2eh_12',['network.h',['../network_8h.html',1,'']]],
+ ['network_5ffile_2ecpp_13',['network_file.cpp',['../network__file_8cpp.html',1,'']]],
+ ['network_5ffile_2eh_14',['network_file.h',['../network__file_8h.html',1,'']]],
+ ['networkbuilddepth_15',['NetworkBuildDepth',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57',1,'gridfire']]],
+ ['networkfileparser_16',['NetworkFileParser',['../classgridfire_1_1io_1_1_network_file_parser.html',1,'gridfire::io']]],
+ ['networkformat_17',['NetworkFormat',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37',1,'gridfire']]],
+ ['networkprimingengineview_18',['NetworkPrimingEngineView',['../classgridfire_1_1_network_priming_engine_view.html',1,'gridfire::NetworkPrimingEngineView'],['../classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177',1,'gridfire::NetworkPrimingEngineView::NetworkPrimingEngineView(const std::string &primingSymbol, DynamicEngine &baseEngine)'],['../classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6',1,'gridfire::NetworkPrimingEngineView::NetworkPrimingEngineView(const fourdst::atomic::Species &primingSpecies, DynamicEngine &baseEngine)']]],
+ ['networkprimingengineview_20example_19',['NetworkPrimingEngineView Example',['../engine_8h.html#NetworkPrimingEngineViewExample',1,'']]],
+ ['networkresizederror_20',['NetworkResizedError',['../classgridfire_1_1exceptions_1_1_network_resized_error.html',1,'gridfire::exceptions::NetworkResizedError'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a80c0adb088e8083309591d24051b056b',1,'gridfire::exceptions::NetworkResizedError::NetworkResizedError()']]],
+ ['networks_21',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md33',1,'']]],
+ ['networksolverstrategy_22',['NetworkSolverStrategy',['../classgridfire_1_1solver_1_1_network_solver_strategy.html',1,'gridfire::solver::NetworkSolverStrategy< EngineT >'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505',1,'gridfire::solver::NetworkSolverStrategy::NetworkSolverStrategy()']]],
+ ['networksolverstrategy_3c_20dynamicengine_20_3e_23',['NetworkSolverStrategy< DynamicEngine >',['../classgridfire_1_1solver_1_1_network_solver_strategy.html',1,'gridfire::solver']]],
+ ['niso_24',['nIso',['../structgridfire_1_1approx8_1_1_approx8_net.html#a31928b4041479da6515a90569322fc02',1,'gridfire::approx8::Approx8Net']]],
+ ['no_5fspecies_5fto_5fprime_25',['NO_SPECIES_TO_PRIME',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45',1,'gridfire']]],
+ ['normalized_5fg_5fvalues_26',['normalized_g_values',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aea71e9198606e0ba393321178f988fcc',1,'gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData::normalized_g_values'],['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a64c1cef58c1bdeab1fcc7f9a30a71609',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord::normalized_g_values']]],
+ ['nuclearenergygenerationrate_27',['nuclearEnergyGenerationRate',['../structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008',1,'gridfire::StepDerivatives']]],
+ ['num_5fspecies_28',['num_species',['../classgridfire_1_1reaction_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97',1,'gridfire::reaction::Reaction::num_species()'],['../classgridfire_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97',1,'gridfire::Reaction::num_species()']]],
+ ['num_5fsteps_29',['num_steps',['../structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6',1,'gridfire::NetOut']]],
+ ['numerical_20solver_20strategies_30',['Numerical Solver Strategies',['../index.html#autotoc_md13',1,'']]],
+ ['numspecies_31',['numSpecies',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c',1,'gridfire::exceptions::StaleEngineTrigger']]],
+ ['nvar_32',['nVar',['../structgridfire_1_1approx8_1_1_approx8_net.html#a7218aa9b3dbe7c6eca52119e115692db',1,'gridfire::approx8::Approx8Net']]]
];
diff --git a/docs/html/search/all_13.js b/docs/html/search/all_13.js
index 8b6dc9ce..a0c962da 100644
--- a/docs/html/search/all_13.js
+++ b/docs/html/search/all_13.js
@@ -1,18 +1,22 @@
var searchData=
[
- ['t9_5fhigh_0',['T9_high',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a750aa8cd8aa8b8da6d1f0db1cc66233d',1,'gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints']]],
- ['t9_5flow_1',['T9_low',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a48e170f77812fdbc06cff18267b241ca',1,'gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints']]],
- ['t9_5ftol_2',['T9_tol',['../structgridfire_1_1_q_s_e_cache_config.html#af4dca2b24aa364fbbf6e99eb26774f40',1,'gridfire::QSECacheConfig']]],
- ['temperature_3',['temperature',['../structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be',1,'gridfire::NetIn::temperature'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9',1,'gridfire::exceptions::StaleEngineTrigger::temperature()']]],
- ['templatedreactionset_4',['TemplatedReactionSet',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html',1,'gridfire::reaction::TemplatedReactionSet< ReactionT >'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a54c8cd7c34564277fe28eefc623f666e',1,'gridfire::reaction::TemplatedReactionSet::TemplatedReactionSet(std::vector< ReactionT > reactions)'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a9def4c9a3a7a03625b7c467fe7440428',1,'gridfire::reaction::TemplatedReactionSet::TemplatedReactionSet()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ada1d1880be53b81a9ed7b966fd6ade5a',1,'gridfire::reaction::TemplatedReactionSet::TemplatedReactionSet(const TemplatedReactionSet< ReactionT > &other)']]],
- ['templatedreactionset_3c_20logicalreaction_20_3e_5',['TemplatedReactionSet< LogicalReaction >',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html',1,'gridfire::reaction']]],
- ['templatedreactionset_3c_20reaction_20_3e_6',['TemplatedReactionSet< Reaction >',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html',1,'gridfire::reaction']]],
- ['the_20c_20library_7',['Building the C++ Library',['../index.html#autotoc_md5',1,'']]],
- ['the_20library_8',['Installing the Library',['../index.html#autotoc_md6',1,'']]],
- ['thirdorder_9',['ThirdOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a3fc719e07f9f63e7f11a3d4fb74b476f',1,'gridfire']]],
- ['tmax_10',['tMax',['../structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1',1,'gridfire::NetIn']]],
- ['totalsteps_11',['totalSteps',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408',1,'gridfire::exceptions::StaleEngineTrigger']]],
- ['trim_5fwhitespace_12',['trim_whitespace',['../namespacegridfire.html#a8b245f261cd8d1711ae8d593b054cf98',1,'gridfire::trim_whitespace()'],['../reaclib_8cpp.html#a2c6902cf3e699a1a65e871efa878a6ab',1,'trim_whitespace(): reaclib.cpp']]],
- ['triple_5falpha_5frate_13',['triple_alpha_rate',['../namespacegridfire_1_1approx8.html#a2715e1a6421717991814892046b896e3',1,'gridfire::approx8']]],
- ['type_14',['type',['../structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897',1,'gridfire::expectations::EngineError::type'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88',1,'gridfire::partition::CompositePartitionFunction::type()'],['../classgridfire_1_1partition_1_1_partition_function.html#ab0c67985a972707eac0ebc64417dfb97',1,'gridfire::partition::PartitionFunction::type()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250',1,'gridfire::partition::GroundStatePartitionFunction::type()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3aa478acf12e09b6dd268f744071b2a0',1,'gridfire::partition::RauscherThielemannPartitionFunction::type()'],['../class_py_partition_function.html#a07f4d0ff83822dd2800897161d2a3717',1,'PyPartitionFunction::type()']]]
+ ['o16a_5frate_0',['o16a_rate',['../namespacegridfire_1_1approx8.html#a7387008e672ea12d277e2194745a4c93',1,'gridfire::approx8']]],
+ ['o16p_5frate_1',['o16p_rate',['../namespacegridfire_1_1approx8.html#a62c2f567dc1ada3816843c8586aad0dc',1,'gridfire::approx8']]],
+ ['observe_2',['observe',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a226b007bfc9960b5c0bb7b88b4f122da',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
+ ['ode_3',['ODE',['../structgridfire_1_1approx8_1_1_o_d_e.html',1,'gridfire::approx8']]],
+ ['on_20common_20platforms_4',['Dependency Installation on Common Platforms',['../index.html#autotoc_md4',1,'']]],
+ ['operator_20std_3a_3astring_5',['string',['../structgridfire_1_1expectations_1_1_stale_engine_error.html#ad8ba0f62a2da0d93aba429181e7e6f84',1,'gridfire::expectations::StaleEngineError']]],
+ ['operator_21_3d_6',['operator!=',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup::operator!=()'],['../classgridfire_1_1reaction_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51',1,'gridfire::reaction::Reaction::operator!=()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#aac76ec883b4ecebb2a94b2485dae7105',1,'gridfire::reaction::TemplatedReactionSet::operator!=()'],['../classgridfire_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51',1,'gridfire::Reaction::operator!=()']]],
+ ['operator_28_29_7',['operator()',['../structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa',1,'gridfire::approx8::Jacobian::operator()()'],['../structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0',1,'gridfire::approx8::ODE::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3',1,'std::hash< gridfire::QSECacheKey >::operator()()'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::operator()()'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aec8c0a0b2fbb71cebb40c263f64385b3',1,'gridfire::solver::DirectNetworkSolver::RHSManager::operator()()'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9',1,'std::hash< gridfire::reaction::Reaction >::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921',1,'std::hash< gridfire::reaction::ReactionSet >::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html#a4b76e7119050266952ded94d6f0544cb',1,'std::hash< gridfire::reaction::LogicalReactionSet >::operator()()']]],
+ ['operator_3c_8',['operator<',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+ ['operator_3c_3c_9',['operator<<',['../structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736',1,'gridfire::PrimingReport::operator<<()'],['../structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7',1,'gridfire::expectations::EngineError::operator<<()'],['../structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903',1,'gridfire::expectations::EngineIndexError::operator<<()'],['../structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b',1,'gridfire::NetOut::operator<<()'],['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f',1,'gridfire::reaction::RateCoefficientSet::operator<<()'],['../classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8',1,'gridfire::reaction::Reaction::operator<<()'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a10cbea11653524dae2f7eafb5c22c90f',1,'gridfire::reaction::LogicalReaction::operator<<()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a47265467dbf2c324ce3e4c85ebbaa6a7',1,'gridfire::reaction::TemplatedReactionSet::operator<<()'],['../classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8',1,'gridfire::Reaction::operator<<()'],['../namespacegridfire_1_1reaclib.html#a6bb94d5adc7bb9db5a67f770f7453e63',1,'gridfire::reaclib::operator<<()']]],
+ ['operator_3d_10',['operator=',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac510dce14a6033551318c0c7b241f3c8',1,'gridfire::reaction::TemplatedReactionSet']]],
+ ['operator_3d_3d_11',['operator==',['../structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81',1,'gridfire::QSECacheKey::operator==()'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup::operator==()'],['../classgridfire_1_1reaction_1_1_reaction.html#ac426457cf0a54a15b206549422083bac',1,'gridfire::reaction::Reaction::operator==()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a128660f5fbc67054f73811ed2982d24d',1,'gridfire::reaction::TemplatedReactionSet::operator==()'],['../classgridfire_1_1_reaction.html#ac426457cf0a54a15b206549422083bac',1,'gridfire::Reaction::operator==()']]],
+ ['operator_3e_12',['operator>',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+ ['operator_5b_5d_13',['operator[]',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a638067a3e55ec2a422206055881aaaad',1,'gridfire::reaction::TemplatedReactionSet::operator[](size_t index) const'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a13e003529a17fa61aafdce3abd2dc773',1,'gridfire::reaction::TemplatedReactionSet::operator[](const std::string_view &id) const']]],
+ ['operators_14',['operators',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+ ['operatorsnamemap_15',['operatorsNameMap',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afb930f4472f4bb713f0b606194762c6f',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+ ['options_16',['GraphEngine Configuration Options',['../index.html#autotoc_md10',1,'']]],
+ ['other_17',['Other',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+ ['outputtype_18',['OutputType',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]]
];
diff --git a/docs/html/search/all_14.js b/docs/html/search/all_14.js
index 4d536409..f3ba32e9 100644
--- a/docs/html/search/all_14.js
+++ b/docs/html/search/all_14.js
@@ -1,11 +1,64 @@
var searchData=
[
- ['u_0',['u',['../structgridfire_1_1_graph_engine_1_1constants.html#a3597bc632a5dd50aaa0044d8c18ca423',1,'gridfire::GraphEngine::constants']]],
- ['unabletosetnetworkreactionserror_1',['UnableToSetNetworkReactionsError',['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html',1,'gridfire::exceptions::UnableToSetNetworkReactionsError'],['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#acb3183c3dea755a8a26b00d638183c30',1,'gridfire::exceptions::UnableToSetNetworkReactionsError::UnableToSetNetworkReactionsError()']]],
- ['unique_5fproduct_5findices_2',['unique_product_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a9974f944a2cf5179baabebe09d60cf18',1,'gridfire::GraphEngine::PrecomputedReaction']]],
- ['unique_5freactant_5findices_3',['unique_reactant_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a510e380116e2e6d9158cf00fedac2666',1,'gridfire::GraphEngine::PrecomputedReaction']]],
- ['unknown_4',['UNKNOWN',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2',1,'gridfire']]],
- ['update_5',['update',['../classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a',1,'gridfire::DynamicEngine::update()'],['../classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6',1,'gridfire::GraphEngine::update()'],['../classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd',1,'gridfire::AdaptiveEngineView::update()'],['../classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae',1,'gridfire::DefinedEngineView::update()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8',1,'gridfire::MultiscalePartitioningEngineView::update()'],['../class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8',1,'PyDynamicEngine::update()']]],
- ['upperindex_6',['upperIndex',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#aa99e1fa2fd4937592c066b0df16f377f',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]],
- ['usage_20examples_7',['Usage Examples',['../engine_8h.html#UsageExamples',1,'Usage Examples'],['../index.html#autotoc_md17',1,'Usage Examples']]]
+ ['packreactionsettologicalreactionset_0',['packReactionSetToLogicalReactionSet',['../namespacegridfire_1_1reaction.html#abfcfafc0cda0c3ed56930a12e7ead67f',1,'gridfire::reaction']]],
+ ['parse_1',['parse',['../classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf',1,'gridfire::io::NetworkFileParser::parse()'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8',1,'gridfire::io::SimpleReactionListFileParser::parse()'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329',1,'gridfire::io::MESANetworkFileParser::parse()'],['../class_py_network_file_parser.html#afe09d1e5b07110e62cf4c6ec713cff54',1,'PyNetworkFileParser::parse()']]],
+ ['parsednetworkdata_2',['ParsedNetworkData',['../namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352',1,'gridfire::io']]],
+ ['parsespeciesstring_3',['parseSpeciesString',['../namespacegridfire_1_1reaclib.html#afc0deac6cbef076e8884e66fd3ab66e0',1,'gridfire::reaclib']]],
+ ['partition_20functions_4',['Available Partition Functions',['../index.html#autotoc_md11',1,'']]],
+ ['partition_2eh_5',['partition.h',['../partition_8h.html',1,'']]],
+ ['partition_5fabstract_2eh_6',['partition_abstract.h',['../partition__abstract_8h.html',1,'']]],
+ ['partition_5fcomposite_2ecpp_7',['partition_composite.cpp',['../partition__composite_8cpp.html',1,'']]],
+ ['partition_5fcomposite_2eh_8',['partition_composite.h',['../partition__composite_8h.html',1,'']]],
+ ['partition_5fground_2ecpp_9',['partition_ground.cpp',['../partition__ground_8cpp.html',1,'']]],
+ ['partition_5fground_2eh_10',['partition_ground.h',['../partition__ground_8h.html',1,'']]],
+ ['partition_5frauscher_5fthielemann_2ecpp_11',['partition_rauscher_thielemann.cpp',['../partition__rauscher__thielemann_8cpp.html',1,'']]],
+ ['partition_5frauscher_5fthielemann_2eh_12',['partition_rauscher_thielemann.h',['../partition__rauscher__thielemann_8h.html',1,'']]],
+ ['partition_5ftypes_2eh_13',['partition_types.h',['../partition__types_8h.html',1,'']]],
+ ['partitionbytimescale_14',['partitionByTimescale',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ad4d29ee55f89384807616d1068797067',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['partitionfunction_15',['PartitionFunction',['../classgridfire_1_1partition_1_1_partition_function.html',1,'gridfire::partition']]],
+ ['partitionnetwork_16',['partitionNetwork',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c',1,'gridfire::MultiscalePartitioningEngineView::partitionNetwork(const std::vector< double > &Y, double T9, double rho)'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7',1,'gridfire::MultiscalePartitioningEngineView::partitionNetwork(const NetIn &netIn)']]],
+ ['pename_17',['peName',['../classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97',1,'gridfire::reaction::Reaction::peName()'],['../classgridfire_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97',1,'gridfire::Reaction::peName()']]],
+ ['platforms_18',['Dependency Installation on Common Platforms',['../index.html#autotoc_md4',1,'']]],
+ ['populatereactionidmap_19',['populateReactionIDMap',['../classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567',1,'gridfire::GraphEngine']]],
+ ['populatespeciestoindexmap_20',['populateSpeciesToIndexMap',['../classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391',1,'gridfire::GraphEngine']]],
+ ['pp_5frate_21',['pp_rate',['../namespacegridfire_1_1approx8.html#a16739298c01e56967ce784a9a957439f',1,'gridfire::approx8']]],
+ ['precomputedreaction_22',['PrecomputedReaction',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html',1,'gridfire::GraphEngine']]],
+ ['precomputenetwork_23',['precomputeNetwork',['../classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd',1,'gridfire::GraphEngine']]],
+ ['prerequisites_24',['Prerequisites',['../index.html#autotoc_md3',1,'']]],
+ ['primedcomposition_25',['primedComposition',['../structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb',1,'gridfire::PrimingReport']]],
+ ['primeengine_26',['primeEngine',['../classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e',1,'gridfire::DynamicEngine::primeEngine()'],['../classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e',1,'gridfire::GraphEngine::primeEngine()'],['../classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3',1,'gridfire::AdaptiveEngineView::primeEngine()'],['../classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460',1,'gridfire::DefinedEngineView::primeEngine()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235',1,'gridfire::MultiscalePartitioningEngineView::primeEngine()'],['../class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878',1,'PyDynamicEngine::primeEngine()']]],
+ ['primenetwork_27',['primeNetwork',['../namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f',1,'gridfire']]],
+ ['priming_2ecpp_28',['priming.cpp',['../priming_8cpp.html',1,'']]],
+ ['priming_2eh_29',['priming.h',['../priming_8h.html',1,'']]],
+ ['primingreport_30',['PrimingReport',['../structgridfire_1_1_priming_report.html',1,'gridfire']]],
+ ['primingreportstatus_31',['PrimingReportStatus',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154',1,'gridfire']]],
+ ['primingreportstatusstrings_32',['PrimingReportStatusStrings',['../namespacegridfire.html#a02be158966bf82a91b159b7a962c3fa5',1,'gridfire']]],
+ ['product_5fpowers_33',['product_powers',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3ce63aa3ad88568f4eb0d3ca2414209f',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+ ['product_5fspecies_34',['product_species',['../classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c',1,'gridfire::reaction::Reaction::product_species()'],['../classgridfire_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c',1,'gridfire::Reaction::product_species()']]],
+ ['products_35',['products',['../classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02',1,'gridfire::reaction::Reaction::products()'],['../classgridfire_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02',1,'gridfire::Reaction::products()']]],
+ ['products_5fstr_36',['products_str',['../structgridfire_1_1reaclib_1_1_reaction_record.html#af1b1d3b0308d965ef0697b247fcf9082',1,'gridfire::reaclib::ReactionRecord']]],
+ ['projects_37',['Related Projects',['../index.html#autotoc_md22',1,'']]],
+ ['py_5fengine_2ecpp_38',['py_engine.cpp',['../py__engine_8cpp.html',1,'']]],
+ ['py_5fengine_2eh_39',['py_engine.h',['../py__engine_8h.html',1,'']]],
+ ['py_5fio_2ecpp_40',['py_io.cpp',['../py__io_8cpp.html',1,'']]],
+ ['py_5fio_2eh_41',['py_io.h',['../py__io_8h.html',1,'']]],
+ ['py_5fpartition_2ecpp_42',['py_partition.cpp',['../py__partition_8cpp.html',1,'']]],
+ ['py_5fpartition_2eh_43',['py_partition.h',['../py__partition_8h.html',1,'']]],
+ ['py_5fscreening_2ecpp_44',['py_screening.cpp',['../py__screening_8cpp.html',1,'']]],
+ ['py_5fscreening_2eh_45',['py_screening.h',['../py__screening_8h.html',1,'']]],
+ ['py_5fsolver_2ecpp_46',['py_solver.cpp',['../py__solver_8cpp.html',1,'']]],
+ ['py_5fsolver_2eh_47',['py_solver.h',['../py__solver_8h.html',1,'']]],
+ ['pybind11_5fmodule_48',['PYBIND11_MODULE',['../bindings_8cpp.html#aa8955e3a8d1ea2d94e8a2c941a12c03f',1,'bindings.cpp']]],
+ ['pydynamicengine_49',['PyDynamicEngine',['../class_py_dynamic_engine.html',1,'']]],
+ ['pydynamicengineview_50',['PyDynamicEngineView',['../class_py_dynamic_engine_view.html',1,'']]],
+ ['pydynamicnetworksolverstrategy_51',['PyDynamicNetworkSolverStrategy',['../class_py_dynamic_network_solver_strategy.html',1,'PyDynamicNetworkSolverStrategy'],['../class_py_dynamic_network_solver_strategy.html#a4a3fce2a9853e7192354834bf2b36159',1,'PyDynamicNetworkSolverStrategy::PyDynamicNetworkSolverStrategy()']]],
+ ['pyengine_52',['PyEngine',['../class_py_engine.html',1,'']]],
+ ['pyengineview_53',['PyEngineView',['../class_py_engine_view.html',1,'']]],
+ ['pynetworkfileparser_54',['PyNetworkFileParser',['../class_py_network_file_parser.html',1,'']]],
+ ['pypartitionfunction_55',['PyPartitionFunction',['../class_py_partition_function.html',1,'']]],
+ ['pypi_20release_56',['1.1 PyPI Release',['../md_docs_2static_2usage.html#autotoc_md26',1,'']]],
+ ['pyscreening_57',['PyScreening',['../class_py_screening.html',1,'']]],
+ ['python_20bindings_20and_20installation_58',['Python Bindings and Installation',['../index.html#autotoc_md7',1,'']]],
+ ['python_20example_59',['Python Example',['../index.html#autotoc_md20',1,'']]],
+ ['python_20usage_20guide_60',['GridFire Python Usage Guide',['../md_docs_2static_2usage.html',1,'']]]
];
diff --git a/docs/html/search/all_15.js b/docs/html/search/all_15.js
index b49fd0df..1ec9a110 100644
--- a/docs/html/search/all_15.js
+++ b/docs/html/search/all_15.js
@@ -1,14 +1,8 @@
var searchData=
[
- ['validatecomposition_0',['validateComposition',['../classgridfire_1_1_graph_engine.html#aeeafeab40a5f4dbfae78bdc87e25e93f',1,'gridfire::GraphEngine']]],
- ['validateconservation_1',['validateConservation',['../classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be',1,'gridfire::GraphEngine']]],
- ['validategroupswithfluxanalysis_2',['validateGroupsWithFluxAnalysis',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aa55ed182301d216264daae3e6dfd8917',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['validatenetworkstate_3',['validateNetworkState',['../classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0',1,'gridfire::DefinedEngineView']]],
- ['validatestate_4',['validateState',['../classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40',1,'gridfire::AdaptiveEngineView']]],
- ['values_5',['values',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6d13bb5294f5dae7e2eb1d26720f944e',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
- ['valuesatcompiletime_6',['ValuesAtCompileTime',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a29d2722f9dbe03584086bc1ab8e102c0',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
- ['vec7_7',['vec7',['../namespacegridfire_1_1approx8.html#aaa49cb0c9ad4b0b9dd0f9b5e192ca12a',1,'gridfire::approx8']]],
- ['vector_5ftype_8',['vector_type',['../namespacegridfire_1_1approx8.html#aa04f907d4ef6a1b6b2a9a28d4bb53882',1,'gridfire::approx8']]],
- ['view_9',['C++ Example: Adaptive Network View',['../index.html#autotoc_md19',1,'']]],
- ['views_10',['Views',['../engine_8h.html#AvailableViews',1,'Available Views'],['../index.html#autotoc_md12',1,'Engine Views']]]
+ ['qsecacheconfig_0',['QSECacheConfig',['../structgridfire_1_1_q_s_e_cache_config.html',1,'gridfire']]],
+ ['qsecachekey_1',['QSECacheKey',['../structgridfire_1_1_q_s_e_cache_key.html',1,'gridfire::QSECacheKey'],['../structgridfire_1_1_q_s_e_cache_key.html#a3078528fc69b8e687448d3108a216c03',1,'gridfire::QSECacheKey::QSECacheKey()']]],
+ ['qsegroup_2',['QSEGroup',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['qsepartition_3',['QSEPartition',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['qvalue_4',['qValue',['../structgridfire_1_1reaclib_1_1_reaction_record.html#aeeb8a1e078a27420e398663825cce644',1,'gridfire::reaclib::ReactionRecord::qValue'],['../classgridfire_1_1reaction_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8',1,'gridfire::reaction::Reaction::qValue()'],['../classgridfire_1_1_reaction.html#abda0b4e4313e6d4ba57acf37d5976fb8',1,'gridfire::Reaction::qValue()']]]
];
diff --git a/docs/html/search/all_16.js b/docs/html/search/all_16.js
index d3a6950a..c09f7f6a 100644
--- a/docs/html/search/all_16.js
+++ b/docs/html/search/all_16.js
@@ -1,9 +1,67 @@
var searchData=
[
- ['weak_0',['WEAK',['../namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8',1,'gridfire::screening']]],
- ['weakscreeningmodel_1',['WeakScreeningModel',['../classgridfire_1_1screening_1_1_weak_screening_model.html',1,'gridfire::screening']]],
- ['what_2',['what',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aac4899d001338688def2b809b55bb2ba',1,'gridfire::exceptions::StaleEngineTrigger::what()'],['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4',1,'gridfire::exceptions::StaleEngineError::what()'],['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#afe87ef508f5b20ca99ec70510747caff',1,'gridfire::exceptions::FailedToPartitionEngineError::what()'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1',1,'gridfire::exceptions::NetworkResizedError::what()'],['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69',1,'gridfire::exceptions::UnableToSetNetworkReactionsError::what()']]],
- ['workflow_3',['Developer Workflow',['../index.html#autotoc_md8',1,'']]],
- ['workflow_20example_4',['Common Workflow Example',['../index.html#autotoc_md21',1,'']]],
- ['workflow_20in_20directnetworksolver_5',['Algorithmic Workflow in DirectNetworkSolver',['../index.html#autotoc_md15',1,'']]]
+ ['rate_5ffit_0',['rate_fit',['../namespacegridfire_1_1approx8.html#aed8175751b4920a53922f87f8c0e63c4',1,'gridfire::approx8']]],
+ ['ratecoefficients_1',['rateCoefficients',['../classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e',1,'gridfire::reaction::Reaction::rateCoefficients()'],['../classgridfire_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e',1,'gridfire::Reaction::rateCoefficients()']]],
+ ['ratecoefficientset_2',['RateCoefficientSet',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html',1,'gridfire::reaction']]],
+ ['rauscher_5fthielemann_5fpartition_5fdata_3',['rauscher_thielemann_partition_data',['../rauscher__thielemann__partition__data_8h.html#a7b9a54e9c58848fe3205479acd770ffd',1,'rauscher_thielemann_partition_data.h']]],
+ ['rauscher_5fthielemann_5fpartition_5fdata_2eh_4',['rauscher_thielemann_partition_data.h',['../rauscher__thielemann__partition__data_8h.html',1,'']]],
+ ['rauscher_5fthielemann_5fpartition_5fdata_5flen_5',['rauscher_thielemann_partition_data_len',['../rauscher__thielemann__partition__data_8h.html#a5240736f3bdb43cf2cd63464c5835df1',1,'rauscher_thielemann_partition_data.h']]],
+ ['rauscher_5fthielemann_5fpartition_5fdata_5frecord_2eh_6',['rauscher_thielemann_partition_data_record.h',['../rauscher__thielemann__partition__data__record_8h.html',1,'']]],
+ ['rauscherthielemann_7',['RauscherThielemann',['../namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728ca4ca5b5dcd7343b06b860f05f3bc454b1',1,'gridfire::partition']]],
+ ['rauscherthielemannpartitiondatarecord_8',['RauscherThielemannPartitionDataRecord',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html',1,'gridfire::partition::record']]],
+ ['rauscherthielemannpartitionfunction_9',['RauscherThielemannPartitionFunction',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html',1,'gridfire::partition::RauscherThielemannPartitionFunction'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c',1,'gridfire::partition::RauscherThielemannPartitionFunction::RauscherThielemannPartitionFunction()']]],
+ ['raw_5freactions_5fdata_10',['raw_reactions_data',['../reactions__data_8h.html#aeb44e2b3b67960dfd83ecd7136c7d38b',1,'reactions_data.h']]],
+ ['raw_5freactions_5fdata_5flen_11',['raw_reactions_data_len',['../reactions__data_8h.html#a32dea82d95667c3df395d58fb469ce2a',1,'reactions_data.h']]],
+ ['reaclib_12',['REACLIB',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182',1,'gridfire']]],
+ ['reaclib_2ecpp_13',['reaclib.cpp',['../reaclib_8cpp.html',1,'']]],
+ ['reaclib_2eh_14',['reaclib.h',['../reaclib_8h.html',1,'']]],
+ ['reactant_5fpowers_15',['reactant_powers',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+ ['reactant_5fspecies_16',['reactant_species',['../classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923',1,'gridfire::reaction::Reaction::reactant_species()'],['../classgridfire_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923',1,'gridfire::Reaction::reactant_species()']]],
+ ['reactants_17',['reactants',['../classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b',1,'gridfire::reaction::Reaction::reactants()'],['../classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b',1,'gridfire::Reaction::reactants()']]],
+ ['reactants_5fstr_18',['reactants_str',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a67afc513db8dbcc43d79733e22ca8d39',1,'gridfire::reaclib::ReactionRecord']]],
+ ['reaction_19',['Reaction',['../classgridfire_1_1_reaction.html',1,'gridfire::Reaction'],['../classgridfire_1_1reaction_1_1_reaction.html',1,'gridfire::reaction::Reaction'],['../classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c',1,'gridfire::reaction::Reaction::Reaction()'],['../classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c',1,'gridfire::Reaction::Reaction()']]],
+ ['reaction_20networks_20',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md33',1,'']]],
+ ['reaction_2ecpp_21',['reaction.cpp',['../reaction_8cpp.html',1,'']]],
+ ['reaction_2eh_22',['reaction.h',['../reaction_8h.html',1,'']]],
+ ['reaction_5findex_23',['reaction_index',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+ ['reactionflow_24',['ReactionFlow',['../structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html',1,'gridfire::AdaptiveEngineView']]],
+ ['reactionptr_25',['reactionPtr',['../structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a3bb21f20df8115d37108cf3c3be3bc6f',1,'gridfire::AdaptiveEngineView::ReactionFlow']]],
+ ['reactionrecord_26',['ReactionRecord',['../structgridfire_1_1reaclib_1_1_reaction_record.html',1,'gridfire::reaclib']]],
+ ['reactions_5fdata_2eh_27',['reactions_data.h',['../reactions__data_8h.html',1,'']]],
+ ['reactionset_28',['ReactionSet',['../namespacegridfire_1_1reaction.html#ad838ce3fb6cc02c3fd90b924a0dd91b1',1,'gridfire::reaction::ReactionSet'],['../namespacegridfire.html#ad838ce3fb6cc02c3fd90b924a0dd91b1',1,'gridfire::ReactionSet']]],
+ ['rebuild_29',['rebuild',['../classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf',1,'gridfire::DynamicEngine::rebuild()'],['../classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490',1,'gridfire::GraphEngine::rebuild()'],['../class_py_dynamic_engine.html#a3d30a9116825ab2c5c209bc2712126bc',1,'PyDynamicEngine::rebuild()']]],
+ ['recordadtape_30',['recordADTape',['../classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889',1,'gridfire::GraphEngine']]],
+ ['register_5fbase_5fengine_5fbindings_31',['register_base_engine_bindings',['../engine_2bindings_8cpp.html#a884aac3c3f2e8c62843c69329052d642',1,'register_base_engine_bindings(pybind11::module &m): bindings.cpp'],['../engine_2bindings_8h.html#a884aac3c3f2e8c62843c69329052d642',1,'register_base_engine_bindings(pybind11::module &m): bindings.cpp']]],
+ ['register_5fcomposite_5fpartition_5fbindings_32',['register_composite_partition_bindings',['../partition_2bindings_8cpp.html#afded1a99d32cbf8745a42e0a81891e18',1,'register_composite_partition_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#afded1a99d32cbf8745a42e0a81891e18',1,'register_composite_partition_bindings(pybind11::module &m): bindings.cpp']]],
+ ['register_5fengine_5fbindings_33',['register_engine_bindings',['../engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c',1,'register_engine_bindings(py::module &m): bindings.cpp'],['../engine_2bindings_8h.html#a73a2ec4150b3954550f16b97102ec993',1,'register_engine_bindings(pybind11::module &m): bindings.h']]],
+ ['register_5fengine_5fview_5fbindings_34',['register_engine_view_bindings',['../engine_2bindings_8cpp.html#a74a027923ac27f235cf565f8d2a355bd',1,'register_engine_view_bindings(pybind11::module &m): bindings.cpp'],['../engine_2bindings_8h.html#a74a027923ac27f235cf565f8d2a355bd',1,'register_engine_view_bindings(pybind11::module &m): bindings.cpp']]],
+ ['register_5fexception_5fbindings_35',['register_exception_bindings',['../exceptions_2bindings_8cpp.html#a15a0d54e4fe015a87d9f7a63284c2958',1,'register_exception_bindings(py::module &m): bindings.cpp'],['../exceptions_2bindings_8h.html#a01725278af607be0d8f5a2d892a5ef73',1,'register_exception_bindings(pybind11::module &m): bindings.h']]],
+ ['register_5fexpectation_5fbindings_36',['register_expectation_bindings',['../expectations_2bindings_8cpp.html#ac6720822f6ad76636adbc1ae6febc2c2',1,'register_expectation_bindings(py::module &m): bindings.cpp'],['../expectations_2bindings_8h.html#a12e0304a6d29af179118a29c8ea93dc0',1,'register_expectation_bindings(pybind11::module &m): bindings.h']]],
+ ['register_5fground_5fstate_5fpartition_5fbindings_37',['register_ground_state_partition_bindings',['../partition_2bindings_8cpp.html#ac36d0a5e8cb0122888fd218a143c7630',1,'register_ground_state_partition_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#ac36d0a5e8cb0122888fd218a143c7630',1,'register_ground_state_partition_bindings(pybind11::module &m): bindings.cpp']]],
+ ['register_5fio_5fbindings_38',['register_io_bindings',['../io_2bindings_8cpp.html#a7f552627cbe94906e0ee98b121e77862',1,'register_io_bindings(py::module &m): bindings.cpp'],['../io_2bindings_8h.html#a1d91b8298302b9f5401bf06c22651df4',1,'register_io_bindings(pybind11::module &m): bindings.h']]],
+ ['register_5fpartition_5fbindings_39',['register_partition_bindings',['../partition_2bindings_8cpp.html#a2806baaec82e0e6d66b80348584e08fd',1,'register_partition_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#a2806baaec82e0e6d66b80348584e08fd',1,'register_partition_bindings(pybind11::module &m): bindings.cpp']]],
+ ['register_5fpartition_5ftypes_5fbindings_40',['register_partition_types_bindings',['../partition_2bindings_8cpp.html#a4c0db94b56a3b02482ac4fd654680cca',1,'register_partition_types_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#a4c0db94b56a3b02482ac4fd654680cca',1,'register_partition_types_bindings(pybind11::module &m): bindings.cpp']]],
+ ['register_5frauscher_5fthielemann_5fpartition_5fbindings_41',['register_rauscher_thielemann_partition_bindings',['../partition_2bindings_8cpp.html#a4e56b30b36165067cf413787a55b9ecb',1,'register_rauscher_thielemann_partition_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#a4e56b30b36165067cf413787a55b9ecb',1,'register_rauscher_thielemann_partition_bindings(pybind11::module &m): bindings.cpp']]],
+ ['register_5frauscher_5fthielemann_5fpartition_5fdata_5frecord_5fbindings_42',['register_rauscher_thielemann_partition_data_record_bindings',['../partition_2bindings_8cpp.html#ae405682b0e35624397583048f4d40f75',1,'register_rauscher_thielemann_partition_data_record_bindings(pybind11::module &m): bindings.cpp'],['../partition_2bindings_8h.html#ae405682b0e35624397583048f4d40f75',1,'register_rauscher_thielemann_partition_data_record_bindings(pybind11::module &m): bindings.cpp']]],
+ ['register_5freaction_5fbindings_43',['register_reaction_bindings',['../reaction_2bindings_8cpp.html#ae174b115814ec42920a799881cef1efa',1,'register_reaction_bindings(py::module &m): bindings.cpp'],['../reaction_2bindings_8h.html#a221d509fd54278898e2cbb73663f53d0',1,'register_reaction_bindings(pybind11::module &m): bindings.h']]],
+ ['register_5fscreening_5fbindings_44',['register_screening_bindings',['../screening_2bindings_8cpp.html#a4fcef69d9382bfbc315cb061038627f4',1,'register_screening_bindings(py::module &m): bindings.cpp'],['../screening_2bindings_8h.html#a9e1a938ffee0a1b9d913fa4968865b1b',1,'register_screening_bindings(pybind11::module &m): bindings.h']]],
+ ['register_5fsolver_5fbindings_45',['register_solver_bindings',['../solver_2bindings_8cpp.html#a8b1a9e2faca389d99c0b5feaa4262630',1,'register_solver_bindings(py::module &m): bindings.cpp'],['../solver_2bindings_8h.html#a426b11f75261b240dc9964f6774403bf',1,'register_solver_bindings(pybind11::module &m): bindings.h']]],
+ ['register_5ftype_5fbindings_46',['register_type_bindings',['../types_2bindings_8cpp.html#a37d2e0b6a2605d063eec5e2a64e9bcc5',1,'register_type_bindings(pybind11::module &m): bindings.cpp'],['../types_2bindings_8h.html#a37d2e0b6a2605d063eec5e2a64e9bcc5',1,'register_type_bindings(pybind11::module &m): bindings.cpp']]],
+ ['register_5futils_5fbindings_47',['register_utils_bindings',['../utils_2bindings_8cpp.html#a7af842f50ca4a721518e716d0229697c',1,'register_utils_bindings(py::module &m): bindings.cpp'],['../utils_2bindings_8h.html#a9eefca377142320755a869fafc6311c7',1,'register_utils_bindings(pybind11::module &m): bindings.h']]],
+ ['related_20projects_48',['Related Projects',['../index.html#autotoc_md22',1,'']]],
+ ['release_49',['1.1 PyPI Release',['../md_docs_2static_2usage.html#autotoc_md26',1,'']]],
+ ['remove_5freaction_50',['remove_reaction',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a89c4c5af12aef7fbfc24316c88237e22',1,'gridfire::reaction::TemplatedReactionSet']]],
+ ['reporting_2eh_51',['reporting.h',['../reporting_8h.html',1,'']]],
+ ['rescueedgespeciesdestructionchannel_52',['rescueEdgeSpeciesDestructionChannel',['../classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f',1,'gridfire::AdaptiveEngineView']]],
+ ['rescueset_53',['RescueSet',['../classgridfire_1_1_adaptive_engine_view.html#a4ff60b5214ec0bdaf683feb6615573a5',1,'gridfire::AdaptiveEngineView']]],
+ ['reservejacobianmatrix_54',['reserveJacobianMatrix',['../classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5',1,'gridfire::GraphEngine']]],
+ ['rev_5fsparse_5fjac_55',['rev_sparse_jac',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4',1,'gridfire::GraphEngine::AtomicReverseRate']]],
+ ['reverse_56',['reverse',['../structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd',1,'gridfire::reaclib::ReactionRecord::reverse'],['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e',1,'gridfire::GraphEngine::AtomicReverseRate::reverse()']]],
+ ['reverse_5fsymmetry_5ffactor_57',['reverse_symmetry_factor',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6bcfe2230dd54b088180d34389266b07',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+ ['rho_5ftol_58',['rho_tol',['../structgridfire_1_1_q_s_e_cache_config.html#a57b7ca68463aa9b78007e5cf35ebf7ce',1,'gridfire::QSECacheConfig']]],
+ ['rhsfunctor_59',['RHSFunctor',['../struct_r_h_s_functor.html',1,'']]],
+ ['rhsmanager_60',['RHSManager',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html',1,'gridfire::solver::DirectNetworkSolver::RHSManager'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#affaaa55fc49d85e5de73f3a6ad5da7c0',1,'gridfire::solver::DirectNetworkSolver::RHSManager::RHSManager()']]],
+ ['rosenbrock_20method_61',['DirectNetworkSolver (Implicit Rosenbrock Method)',['../index.html#autotoc_md14',1,'']]],
+ ['rpname_62',['rpName',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a523b7cfb0a6d8ddccd785aef2f425ad1',1,'gridfire::reaclib::ReactionRecord']]],
+ ['rt_5ftemperature_5fgrid_5ft9_63',['RT_TEMPERATURE_GRID_T9',['../namespacegridfire_1_1partition.html#a1e08a3c20c55bc6fa4a4ecdf7ea57b8f',1,'gridfire::partition']]]
];
diff --git a/docs/html/search/all_17.js b/docs/html/search/all_17.js
index 64cc9a97..d3ee2644 100644
--- a/docs/html/search/all_17.js
+++ b/docs/html/search/all_17.js
@@ -1,4 +1,60 @@
var searchData=
[
- ['yi_5ftol_0',['Yi_tol',['../structgridfire_1_1_q_s_e_cache_config.html#a31d3e8d1b83109524c94641ce06fa351',1,'gridfire::QSECacheConfig']]]
+ ['s_5fall_5freaclib_5freactions_5fptr_0',['s_all_reaclib_reactions_ptr',['../namespacegridfire_1_1reaclib.html#a5dba5efc372d2a9e9e846dfd6563f3c0',1,'gridfire::reaclib']]],
+ ['s_5finitialized_1',['s_initialized',['../namespacegridfire_1_1reaclib.html#af6ff0dfe7ffe34c73ba9acbab5ef8a66',1,'gridfire::reaclib']]],
+ ['s_5foperator_5fparens_5fcalled_2',['s_operator_parens_called',['../namespacegridfire.html#a8b632637f62614f509cde0e404a79054',1,'gridfire']]],
+ ['screening_2eh_3',['screening.h',['../screening_8h.html',1,'']]],
+ ['screening_5fabstract_2eh_4',['screening_abstract.h',['../screening__abstract_8h.html',1,'']]],
+ ['screening_5fbare_2ecpp_5',['screening_bare.cpp',['../screening__bare_8cpp.html',1,'']]],
+ ['screening_5fbare_2eh_6',['screening_bare.h',['../screening__bare_8h.html',1,'']]],
+ ['screening_5ftypes_2ecpp_7',['screening_types.cpp',['../screening__types_8cpp.html',1,'']]],
+ ['screening_5ftypes_2eh_8',['screening_types.h',['../screening__types_8h.html',1,'']]],
+ ['screening_5fweak_2ecpp_9',['screening_weak.cpp',['../screening__weak_8cpp.html',1,'']]],
+ ['screening_5fweak_2eh_10',['screening_weak.h',['../screening__weak_8h.html',1,'']]],
+ ['screeningmodel_11',['ScreeningModel',['../classgridfire_1_1screening_1_1_screening_model.html',1,'gridfire::screening']]],
+ ['screeningtype_12',['ScreeningType',['../namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25',1,'gridfire::screening']]],
+ ['secondorder_13',['SecondOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a264572d66aed5373d19dc80c7cde1f46',1,'gridfire']]],
+ ['seed_5findices_14',['seed_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+ ['selectpartitionfunction_15',['selectPartitionFunction',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b',1,'gridfire::partition::CompositePartitionFunction']]],
+ ['selectscreeningmodel_16',['selectScreeningModel',['../namespacegridfire_1_1screening.html#a6ca8556d27ac373e176f5b23437c416e',1,'gridfire::screening']]],
+ ['setformat_17',['setFormat',['../classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4',1,'gridfire::Network']]],
+ ['setnetworkreactions_18',['setNetworkReactions',['../classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f',1,'gridfire::DynamicEngine::setNetworkReactions()'],['../classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0',1,'gridfire::GraphEngine::setNetworkReactions()'],['../classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672',1,'gridfire::AdaptiveEngineView::setNetworkReactions()'],['../classgridfire_1_1_defined_engine_view.html#a9736edfb7c9148b60de30d50c0d3530d',1,'gridfire::DefinedEngineView::setNetworkReactions()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#acb5fa7f03cd89b8c1b6b9ffdf3abb12e',1,'gridfire::MultiscalePartitioningEngineView::setNetworkReactions()'],['../class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6',1,'PyDynamicEngine::setNetworkReactions()']]],
+ ['setprecomputation_19',['setPrecomputation',['../classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1',1,'gridfire::GraphEngine']]],
+ ['setscreeningmodel_20',['setScreeningModel',['../classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd',1,'gridfire::DynamicEngine::setScreeningModel()'],['../classgridfire_1_1_graph_engine.html#a8110e687844f921438bb517e1d8ce62f',1,'gridfire::GraphEngine::setScreeningModel()'],['../classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b',1,'gridfire::AdaptiveEngineView::setScreeningModel()'],['../classgridfire_1_1_defined_engine_view.html#abf2da57c83c3c4c635cb301f53088258',1,'gridfire::DefinedEngineView::setScreeningModel()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a0c0a0ade632eb10f0eecab828a059f',1,'gridfire::MultiscalePartitioningEngineView::setScreeningModel()'],['../class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac',1,'PyDynamicEngine::setScreeningModel()']]],
+ ['setstiff_21',['setStiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#aefed972081514c29cdaaa1efd857ad8d',1,'gridfire::approx8::Approx8Network::setStiff()'],['../classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe',1,'gridfire::Network::setStiff()']]],
+ ['setusereversereactions_22',['setUseReverseReactions',['../classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197',1,'gridfire::GraphEngine']]],
+ ['shallow_23',['Shallow',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a928d0f1285ee7d36c1c2fa1b1b7a164c',1,'gridfire']]],
+ ['simplereactionlistfileparser_24',['SimpleReactionListFileParser',['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html',1,'gridfire::io::SimpleReactionListFileParser'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993',1,'gridfire::io::SimpleReactionListFileParser::SimpleReactionListFileParser()']]],
+ ['size_25',['size',['../classgridfire_1_1reaction_1_1_logical_reaction.html#afa41050855b842c63db16c94d2e9b897',1,'gridfire::reaction::LogicalReaction::size()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2',1,'gridfire::reaction::TemplatedReactionSet::size()']]],
+ ['solveqseabundances_26',['solveQSEAbundances',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c5fcb8e3396d74359fd601554c9ffa9',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['solver_20implementations_27',['Future Solver Implementations',['../index.html#autotoc_md16',1,'']]],
+ ['solver_20strategies_28',['Numerical Solver Strategies',['../index.html#autotoc_md13',1,'']]],
+ ['solver_2ecpp_29',['solver.cpp',['../solver_8cpp.html',1,'']]],
+ ['solver_2eh_30',['solver.h',['../solver_8h.html',1,'']]],
+ ['source_31',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md27',1,'']]],
+ ['sourcelabel_32',['sourceLabel',['../classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0',1,'gridfire::reaction::Reaction::sourceLabel()'],['../classgridfire_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0',1,'gridfire::Reaction::sourceLabel()']]],
+ ['sources_33',['sources',['../classgridfire_1_1reaction_1_1_logical_reaction.html#add094eda0e71126f8443698d7f3317f4',1,'gridfire::reaction::LogicalReaction']]],
+ ['sparsitypattern_34',['SparsityPattern',['../namespacegridfire.html#a898dfe22579e649935645cbd6f073178',1,'gridfire']]],
+ ['species_5findices_35',['species_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+ ['stale_36',['STALE',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca4d855a061b3066dc14a3b12ed26b5456',1,'gridfire::expectations']]],
+ ['staleengineerror_37',['StaleEngineError',['../classgridfire_1_1exceptions_1_1_stale_engine_error.html',1,'gridfire::exceptions::StaleEngineError'],['../structgridfire_1_1expectations_1_1_stale_engine_error.html',1,'gridfire::expectations::StaleEngineError'],['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50',1,'gridfire::exceptions::StaleEngineError::StaleEngineError()'],['../structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10',1,'gridfire::expectations::StaleEngineError::StaleEngineError()']]],
+ ['staleengineerrortypes_38',['StaleEngineErrorTypes',['../namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7',1,'gridfire::expectations']]],
+ ['staleenginetrigger_39',['StaleEngineTrigger',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html',1,'gridfire::exceptions::StaleEngineTrigger'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d',1,'gridfire::exceptions::StaleEngineTrigger::StaleEngineTrigger()']]],
+ ['staletype_40',['staleType',['../structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590',1,'gridfire::expectations::StaleEngineError']]],
+ ['state_41',['state',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html',1,'gridfire::exceptions::StaleEngineTrigger']]],
+ ['status_42',['status',['../structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d',1,'gridfire::PrimingReport']]],
+ ['std_43',['std',['../namespacestd.html',1,'']]],
+ ['step_20by_20step_20example_44',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md31',1,'']]],
+ ['step_20example_45',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md31',1,'']]],
+ ['stepderivatives_46',['StepDerivatives',['../structgridfire_1_1_step_derivatives.html',1,'gridfire']]],
+ ['stoichiometric_5fcoefficients_47',['stoichiometric_coefficients',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+ ['stoichiometry_48',['stoichiometry',['../classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac',1,'gridfire::reaction::Reaction::stoichiometry(const fourdst::atomic::Species &species) const'],['../classgridfire_1_1reaction_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3',1,'gridfire::reaction::Reaction::stoichiometry() const'],['../classgridfire_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac',1,'gridfire::Reaction::stoichiometry(const fourdst::atomic::Species &species) const'],['../classgridfire_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3',1,'gridfire::Reaction::stoichiometry() const']]],
+ ['strategies_49',['Numerical Solver Strategies',['../index.html#autotoc_md13',1,'']]],
+ ['stringtobasepartitiontype_50',['stringToBasePartitionType',['../namespacegridfire_1_1partition.html#a84de6308486d35ce8bc1a9dea52dfa4a',1,'gridfire::partition']]],
+ ['success_51',['success',['../structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3',1,'gridfire::PrimingReport']]],
+ ['sum_5fproduct_52',['sum_product',['../namespacegridfire_1_1approx8.html#aafd24448743672021dd4507316060817',1,'gridfire::approx8']]],
+ ['supports_53',['supports',['../classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c',1,'gridfire::partition::CompositePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5',1,'gridfire::partition::PartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd',1,'gridfire::partition::GroundStatePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5',1,'gridfire::partition::RauscherThielemannPartitionFunction::supports()'],['../class_py_partition_function.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8',1,'PyPartitionFunction::supports()']]],
+ ['symmetry_5ffactor_54',['symmetry_factor',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+ ['syncinternalmaps_55',['syncInternalMaps',['../classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f',1,'gridfire::GraphEngine']]],
+ ['system_5fresized_56',['SYSTEM_RESIZED',['../namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7a109aa03c8823fcc0ab193b7e48664cbf',1,'gridfire::expectations']]]
];
diff --git a/docs/html/search/all_18.js b/docs/html/search/all_18.js
index 1da0cb42..5536fe98 100644
--- a/docs/html/search/all_18.js
+++ b/docs/html/search/all_18.js
@@ -1,4 +1,20 @@
var searchData=
[
- ['z_0',['z',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#abb1416e2d8d4d27264c9eece547006b6',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord']]]
+ ['t9_5fhigh_0',['T9_high',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a750aa8cd8aa8b8da6d1f0db1cc66233d',1,'gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints']]],
+ ['t9_5flow_1',['T9_low',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a48e170f77812fdbc06cff18267b241ca',1,'gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints']]],
+ ['t9_5ftol_2',['T9_tol',['../structgridfire_1_1_q_s_e_cache_config.html#af4dca2b24aa364fbbf6e99eb26774f40',1,'gridfire::QSECacheConfig']]],
+ ['temperature_3',['temperature',['../structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be',1,'gridfire::NetIn::temperature'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9',1,'gridfire::exceptions::StaleEngineTrigger::temperature()']]],
+ ['templatedreactionset_4',['TemplatedReactionSet',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html',1,'gridfire::reaction::TemplatedReactionSet< ReactionT >'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a54c8cd7c34564277fe28eefc623f666e',1,'gridfire::reaction::TemplatedReactionSet::TemplatedReactionSet(std::vector< ReactionT > reactions)'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a9def4c9a3a7a03625b7c467fe7440428',1,'gridfire::reaction::TemplatedReactionSet::TemplatedReactionSet()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ada1d1880be53b81a9ed7b966fd6ade5a',1,'gridfire::reaction::TemplatedReactionSet::TemplatedReactionSet(const TemplatedReactionSet< ReactionT > &other)']]],
+ ['templatedreactionset_3c_20logicalreaction_20_3e_5',['TemplatedReactionSet< LogicalReaction >',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html',1,'gridfire::reaction']]],
+ ['templatedreactionset_3c_20reaction_20_3e_6',['TemplatedReactionSet< Reaction >',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html',1,'gridfire::reaction']]],
+ ['the_20basics_7',['5. Beyond the Basics',['../md_docs_2static_2usage.html#autotoc_md35',1,'']]],
+ ['the_20c_20library_8',['Building the C++ Library',['../index.html#autotoc_md5',1,'']]],
+ ['the_20library_9',['Installing the Library',['../index.html#autotoc_md6',1,'']]],
+ ['these_20engines_20and_20views_10',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md29',1,'']]],
+ ['thirdorder_11',['ThirdOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a3fc719e07f9f63e7f11a3d4fb74b476f',1,'gridfire']]],
+ ['tmax_12',['tMax',['../structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1',1,'gridfire::NetIn']]],
+ ['totalsteps_13',['totalSteps',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408',1,'gridfire::exceptions::StaleEngineTrigger']]],
+ ['trim_5fwhitespace_14',['trim_whitespace',['../namespacegridfire.html#a8b245f261cd8d1711ae8d593b054cf98',1,'gridfire::trim_whitespace()'],['../reaclib_8cpp.html#a2c6902cf3e699a1a65e871efa878a6ab',1,'trim_whitespace(): reaclib.cpp']]],
+ ['triple_5falpha_5frate_15',['triple_alpha_rate',['../namespacegridfire_1_1approx8.html#a2715e1a6421717991814892046b896e3',1,'gridfire::approx8']]],
+ ['type_16',['type',['../structgridfire_1_1expectations_1_1_engine_error.html#ac5fcafed01de529e03afa055d18bd897',1,'gridfire::expectations::EngineError::type'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88',1,'gridfire::partition::CompositePartitionFunction::type()'],['../classgridfire_1_1partition_1_1_partition_function.html#ab0c67985a972707eac0ebc64417dfb97',1,'gridfire::partition::PartitionFunction::type()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af8d0146fc2afedf3785ae9ec932d3250',1,'gridfire::partition::GroundStatePartitionFunction::type()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3aa478acf12e09b6dd268f744071b2a0',1,'gridfire::partition::RauscherThielemannPartitionFunction::type()'],['../class_py_partition_function.html#a07f4d0ff83822dd2800897161d2a3717',1,'PyPartitionFunction::type()']]]
];
diff --git a/docs/html/search/all_19.js b/docs/html/search/all_19.js
index c59abada..22c71491 100644
--- a/docs/html/search/all_19.js
+++ b/docs/html/search/all_19.js
@@ -1,12 +1,13 @@
var searchData=
[
- ['_7eengine_0',['~Engine',['../classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037',1,'gridfire::Engine']]],
- ['_7eengineerror_1',['~EngineError',['../structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897',1,'gridfire::expectations::EngineError']]],
- ['_7eengineview_2',['~EngineView',['../classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74',1,'gridfire::EngineView']]],
- ['_7enetwork_3',['~Network',['../classgridfire_1_1_network.html#ab8d83289b62dda9b4e02f25311f85b79',1,'gridfire::Network']]],
- ['_7enetworkfileparser_4',['~NetworkFileParser',['../classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3',1,'gridfire::io::NetworkFileParser']]],
- ['_7enetworksolverstrategy_5',['~NetworkSolverStrategy',['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318',1,'gridfire::solver::NetworkSolverStrategy']]],
- ['_7epartitionfunction_6',['~PartitionFunction',['../classgridfire_1_1partition_1_1_partition_function.html#a197a0663dcfb4ab4be3b0e14b98391db',1,'gridfire::partition::PartitionFunction']]],
- ['_7ereaction_7',['~Reaction',['../classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a',1,'gridfire::reaction::Reaction::~Reaction()'],['../classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a',1,'gridfire::Reaction::~Reaction()']]],
- ['_7escreeningmodel_8',['~ScreeningModel',['../classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7',1,'gridfire::screening::ScreeningModel']]]
+ ['u_0',['u',['../structgridfire_1_1_graph_engine_1_1constants.html#a3597bc632a5dd50aaa0044d8c18ca423',1,'gridfire::GraphEngine::constants']]],
+ ['unabletosetnetworkreactionserror_1',['UnableToSetNetworkReactionsError',['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html',1,'gridfire::exceptions::UnableToSetNetworkReactionsError'],['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#acb3183c3dea755a8a26b00d638183c30',1,'gridfire::exceptions::UnableToSetNetworkReactionsError::UnableToSetNetworkReactionsError()']]],
+ ['unique_5fproduct_5findices_2',['unique_product_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a9974f944a2cf5179baabebe09d60cf18',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+ ['unique_5freactant_5findices_3',['unique_reactant_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a510e380116e2e6d9158cf00fedac2666',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+ ['unknown_4',['UNKNOWN',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2',1,'gridfire']]],
+ ['update_5',['update',['../classgridfire_1_1_dynamic_engine.html#aa799ff785e7e79bf35b11efd55f6282a',1,'gridfire::DynamicEngine::update()'],['../classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6',1,'gridfire::GraphEngine::update()'],['../classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd',1,'gridfire::AdaptiveEngineView::update()'],['../classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae',1,'gridfire::DefinedEngineView::update()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a6bee75b5a6e508e6eebf83f0d48c50b8',1,'gridfire::MultiscalePartitioningEngineView::update()'],['../class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8',1,'PyDynamicEngine::update()']]],
+ ['upperindex_6',['upperIndex',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#aa99e1fa2fd4937592c066b0df16f377f',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]],
+ ['usage_20examples_7',['Usage Examples',['../engine_8h.html#UsageExamples',1,'Usage Examples'],['../index.html#autotoc_md17',1,'Usage Examples']]],
+ ['usage_20guide_8',['GridFire Python Usage Guide',['../md_docs_2static_2usage.html',1,'']]],
+ ['usage_2emd_9',['usage.md',['../usage_8md.html',1,'']]]
];
diff --git a/docs/html/search/all_1a.js b/docs/html/search/all_1a.js
new file mode 100644
index 00000000..3894f8b2
--- /dev/null
+++ b/docs/html/search/all_1a.js
@@ -0,0 +1,14 @@
+var searchData=
+[
+ ['validateconservation_0',['validateConservation',['../classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be',1,'gridfire::GraphEngine']]],
+ ['validategroupswithfluxanalysis_1',['validateGroupsWithFluxAnalysis',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aa55ed182301d216264daae3e6dfd8917',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['validatenetworkstate_2',['validateNetworkState',['../classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0',1,'gridfire::DefinedEngineView']]],
+ ['validatestate_3',['validateState',['../classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40',1,'gridfire::AdaptiveEngineView']]],
+ ['values_4',['values',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6d13bb5294f5dae7e2eb1d26720f944e',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+ ['valuesatcompiletime_5',['ValuesAtCompileTime',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a29d2722f9dbe03584086bc1ab8e102c0',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+ ['vec7_6',['vec7',['../namespacegridfire_1_1approx8.html#aaa49cb0c9ad4b0b9dd0f9b5e192ca12a',1,'gridfire::approx8']]],
+ ['vector_5ftype_7',['vector_type',['../namespacegridfire_1_1approx8.html#aa04f907d4ef6a1b6b2a9a28d4bb53882',1,'gridfire::approx8']]],
+ ['view_8',['C++ Example: Adaptive Network View',['../index.html#autotoc_md19',1,'']]],
+ ['views_9',['Views',['../md_docs_2static_2usage.html#autotoc_md29',1,'2. Why These Engines and Views?'],['../engine_8h.html#AvailableViews',1,'Available Views'],['../index.html#autotoc_md12',1,'Engine Views']]],
+ ['visualizing_20reaction_20networks_10',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md33',1,'']]]
+];
diff --git a/docs/html/search/all_1b.js b/docs/html/search/all_1b.js
new file mode 100644
index 00000000..34bb3f94
--- /dev/null
+++ b/docs/html/search/all_1b.js
@@ -0,0 +1,10 @@
+var searchData=
+[
+ ['weak_0',['WEAK',['../namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8',1,'gridfire::screening']]],
+ ['weakscreeningmodel_1',['WeakScreeningModel',['../classgridfire_1_1screening_1_1_weak_screening_model.html',1,'gridfire::screening']]],
+ ['what_2',['what',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aac4899d001338688def2b809b55bb2ba',1,'gridfire::exceptions::StaleEngineTrigger::what()'],['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4',1,'gridfire::exceptions::StaleEngineError::what()'],['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#afe87ef508f5b20ca99ec70510747caff',1,'gridfire::exceptions::FailedToPartitionEngineError::what()'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1',1,'gridfire::exceptions::NetworkResizedError::what()'],['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69',1,'gridfire::exceptions::UnableToSetNetworkReactionsError::what()']]],
+ ['why_20these_20engines_20and_20views_3',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md29',1,'']]],
+ ['workflow_4',['Developer Workflow',['../index.html#autotoc_md8',1,'']]],
+ ['workflow_20example_5',['Common Workflow Example',['../index.html#autotoc_md21',1,'']]],
+ ['workflow_20in_20directnetworksolver_6',['Algorithmic Workflow in DirectNetworkSolver',['../index.html#autotoc_md15',1,'']]]
+];
diff --git a/docs/html/search/all_1c.js b/docs/html/search/all_1c.js
new file mode 100644
index 00000000..64cc9a97
--- /dev/null
+++ b/docs/html/search/all_1c.js
@@ -0,0 +1,4 @@
+var searchData=
+[
+ ['yi_5ftol_0',['Yi_tol',['../structgridfire_1_1_q_s_e_cache_config.html#a31d3e8d1b83109524c94641ce06fa351',1,'gridfire::QSECacheConfig']]]
+];
diff --git a/docs/html/search/all_1d.js b/docs/html/search/all_1d.js
new file mode 100644
index 00000000..1da0cb42
--- /dev/null
+++ b/docs/html/search/all_1d.js
@@ -0,0 +1,4 @@
+var searchData=
+[
+ ['z_0',['z',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#abb1416e2d8d4d27264c9eece547006b6',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord']]]
+];
diff --git a/docs/html/search/all_1e.js b/docs/html/search/all_1e.js
new file mode 100644
index 00000000..c59abada
--- /dev/null
+++ b/docs/html/search/all_1e.js
@@ -0,0 +1,12 @@
+var searchData=
+[
+ ['_7eengine_0',['~Engine',['../classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037',1,'gridfire::Engine']]],
+ ['_7eengineerror_1',['~EngineError',['../structgridfire_1_1expectations_1_1_engine_error.html#a018c845e244869df264b1b073de39897',1,'gridfire::expectations::EngineError']]],
+ ['_7eengineview_2',['~EngineView',['../classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74',1,'gridfire::EngineView']]],
+ ['_7enetwork_3',['~Network',['../classgridfire_1_1_network.html#ab8d83289b62dda9b4e02f25311f85b79',1,'gridfire::Network']]],
+ ['_7enetworkfileparser_4',['~NetworkFileParser',['../classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3',1,'gridfire::io::NetworkFileParser']]],
+ ['_7enetworksolverstrategy_5',['~NetworkSolverStrategy',['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318',1,'gridfire::solver::NetworkSolverStrategy']]],
+ ['_7epartitionfunction_6',['~PartitionFunction',['../classgridfire_1_1partition_1_1_partition_function.html#a197a0663dcfb4ab4be3b0e14b98391db',1,'gridfire::partition::PartitionFunction']]],
+ ['_7ereaction_7',['~Reaction',['../classgridfire_1_1reaction_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a',1,'gridfire::reaction::Reaction::~Reaction()'],['../classgridfire_1_1_reaction.html#ab1860df84843be70f97469761e11ab6a',1,'gridfire::Reaction::~Reaction()']]],
+ ['_7escreeningmodel_8',['~ScreeningModel',['../classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7',1,'gridfire::screening::ScreeningModel']]]
+];
diff --git a/docs/html/search/all_2.js b/docs/html/search/all_2.js
index 162baf12..7941b051 100644
--- a/docs/html/search/all_2.js
+++ b/docs/html/search/all_2.js
@@ -1,60 +1,4 @@
var searchData=
[
- ['c_0',['c',['../structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306',1,'gridfire::GraphEngine::constants']]],
- ['c_20example_3a_20adaptive_20network_20view_1',['C++ Example: Adaptive Network View',['../index.html#autotoc_md19',1,'']]],
- ['c_20example_3a_20graphengine_20initialization_2',['C++ Example: GraphEngine Initialization',['../index.html#autotoc_md18',1,'']]],
- ['c_20library_3',['Building the C++ Library',['../index.html#autotoc_md5',1,'']]],
- ['c12a_5frate_4',['c12a_rate',['../namespacegridfire_1_1approx8.html#af7d9b901dbb3c88c151d927912d5121f',1,'gridfire::approx8']]],
- ['c12c12_5frate_5',['c12c12_rate',['../namespacegridfire_1_1approx8.html#a70eb18e9706ac28a308dcb4fcec7421f',1,'gridfire::approx8']]],
- ['c12o16_5frate_6',['c12o16_rate',['../namespacegridfire_1_1approx8.html#a8c30b7e6099c5fc2aa94f9c68fd075dc',1,'gridfire::approx8']]],
- ['c12p_5frate_7',['c12p_rate',['../namespacegridfire_1_1approx8.html#a890ad24c2cdb15fb76a3ff8a7b8d77db',1,'gridfire::approx8']]],
- ['cachestats_8',['CacheStats',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['calculate_5fforward_5frate_5flog_5fderivative_9',['calculate_forward_rate_log_derivative',['../classgridfire_1_1reaction_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061',1,'gridfire::reaction::Reaction::calculate_forward_rate_log_derivative()'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#aa4b8d0d30459f360ff6e29d848e943d5',1,'gridfire::reaction::LogicalReaction::calculate_forward_rate_log_derivative()'],['../classgridfire_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061',1,'gridfire::Reaction::calculate_forward_rate_log_derivative()']]],
- ['calculate_5frate_10',['calculate_rate',['../classgridfire_1_1reaction_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec',1,'gridfire::reaction::Reaction::calculate_rate(const double T9) const'],['../classgridfire_1_1reaction_1_1_reaction.html#a735192a42f72cd68f289493753e1a616',1,'gridfire::reaction::Reaction::calculate_rate(const CppAD::AD< double > T9) const'],['../classgridfire_1_1reaction_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af',1,'gridfire::reaction::Reaction::calculate_rate(const T T9) const'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a1d2fb3b6a6a1860ace98b32447d1dd1b',1,'gridfire::reaction::LogicalReaction::calculate_rate(const double T9) const override'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#adad6f4297c1d8ce487eab092b73cdd32',1,'gridfire::reaction::LogicalReaction::calculate_rate(const CppAD::AD< double > T9) const override'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a019b721d83741acdb16036f00739f87c',1,'gridfire::reaction::LogicalReaction::calculate_rate(const T T9) const'],['../classgridfire_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec',1,'gridfire::Reaction::calculate_rate(const double T9) const'],['../classgridfire_1_1_reaction.html#a735192a42f72cd68f289493753e1a616',1,'gridfire::Reaction::calculate_rate(const CppAD::AD< double > T9) const'],['../classgridfire_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af',1,'gridfire::Reaction::calculate_rate(const T T9) const']]],
- ['calculateallderivatives_11',['calculateAllDerivatives',['../classgridfire_1_1_graph_engine.html#af41df9ce979b6410e12642cb093916c9',1,'gridfire::GraphEngine::calculateAllDerivatives(const std::vector< T > &Y_in, T T9, T rho) const'],['../classgridfire_1_1_graph_engine.html#aaf4d54e4b774ab8ec8eabec006579d31',1,'gridfire::GraphEngine::calculateAllDerivatives(const std::vector< double > &Y_in, const double T9, const double rho) const'],['../classgridfire_1_1_graph_engine.html#a71a3d1181b90c3becdc5d9a3da05b9c9',1,'gridfire::GraphEngine::calculateAllDerivatives(const std::vector< ADDouble > &Y_in, const ADDouble &T9, const ADDouble &rho) const']]],
- ['calculateallderivativesusingprecomputation_12',['calculateAllDerivativesUsingPrecomputation',['../classgridfire_1_1_graph_engine.html#a97f98706b51fbe0d167ed81ffe58c438',1,'gridfire::GraphEngine']]],
- ['calculateallreactionflows_13',['calculateAllReactionFlows',['../classgridfire_1_1_adaptive_engine_view.html#abdbaf4b87629efe43ac1255dad424c0c',1,'gridfire::AdaptiveEngineView']]],
- ['calculatecreationrate_14',['calculateCreationRate',['../namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d',1,'gridfire']]],
- ['calculatedestructionrateconstant_15',['calculateDestructionRateConstant',['../namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2',1,'gridfire']]],
- ['calculatefactors_5fimpl_16',['calculateFactors_impl',['../classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a',1,'gridfire::screening::BareScreeningModel::calculateFactors_impl()'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#a2695206d46b9d2c2503f8e58c44df88f',1,'gridfire::screening::WeakScreeningModel::calculateFactors_impl()']]],
- ['calculatemolarreactionflow_17',['CalculateMolarReactionFlow',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
- ['calculatemolarreactionflow_18',['calculateMolarReactionFlow',['../classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785',1,'gridfire::DynamicEngine::calculateMolarReactionFlow()'],['../classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f',1,'gridfire::GraphEngine::calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< double > &Y, const double T9, const double rho) const override'],['../classgridfire_1_1_graph_engine.html#a5e96b5a0b34c8932f0e14eabda57f1a4',1,'gridfire::GraphEngine::calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< T > &Y, const T T9, const T rho) const'],['../classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31',1,'gridfire::AdaptiveEngineView::calculateMolarReactionFlow()'],['../classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032',1,'gridfire::DefinedEngineView::calculateMolarReactionFlow()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044',1,'gridfire::MultiscalePartitioningEngineView::calculateMolarReactionFlow()'],['../class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a',1,'PyDynamicEngine::calculateMolarReactionFlow()']]],
- ['calculatereversemolarreactionflow_19',['calculateReverseMolarReactionFlow',['../classgridfire_1_1_graph_engine.html#a17774cd9ffcf1ba94019df766a0984a0',1,'gridfire::GraphEngine']]],
- ['calculatereverserate_20',['calculateReverseRate',['../classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28',1,'gridfire::GraphEngine']]],
- ['calculatereverseratetwobody_21',['calculateReverseRateTwoBody',['../classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755',1,'gridfire::GraphEngine']]],
- ['calculatereverseratetwobodyderivative_22',['calculateReverseRateTwoBodyDerivative',['../classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7',1,'gridfire::GraphEngine']]],
- ['calculaterhsandenergy_23',['CalculateRHSAndEnergy',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505aafefea58639f78d7c750970bbad28420',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
- ['calculaterhsandenergy_24',['calculateRHSAndEnergy',['../classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb',1,'gridfire::Engine::calculateRHSAndEnergy()'],['../classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081',1,'gridfire::GraphEngine::calculateRHSAndEnergy()'],['../classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5',1,'gridfire::AdaptiveEngineView::calculateRHSAndEnergy()'],['../classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d',1,'gridfire::DefinedEngineView::calculateRHSAndEnergy()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb',1,'gridfire::MultiscalePartitioningEngineView::calculateRHSAndEnergy()'],['../class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d',1,'PyEngine::calculateRHSAndEnergy()'],['../class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a',1,'PyDynamicEngine::calculateRHSAndEnergy()']]],
- ['calculatescreeningfactors_25',['calculateScreeningFactors',['../classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde',1,'gridfire::screening::ScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const =0'],['../classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22',1,'gridfire::screening::ScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< ADDouble > &Y, const ADDouble T9, const ADDouble rho) const =0'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60',1,'gridfire::screening::BareScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const override'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99',1,'gridfire::screening::BareScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< ADDouble > &Y, const ADDouble T9, const ADDouble rho) const override'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c',1,'gridfire::screening::WeakScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const override'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#ac6bc78769670a460af1ff88284cb8ad4',1,'gridfire::screening::WeakScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< CppAD::AD< double > > &Y, const CppAD::AD< double > T9, const CppAD::AD< double > rho) const override'],['../class_py_screening.html#a2b8756c197eb89e77cb6dd231c979315',1,'PyScreening::calculateScreeningFactors(const gridfire::reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const override'],['../class_py_screening.html#a5539d59311c778cf7f0006acc8f84ade',1,'PyScreening::calculateScreeningFactors(const gridfire::reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< ADDouble > &Y, const ADDouble T9, const ADDouble rho) const override']]],
- ['chapter_26',['chapter',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc',1,'gridfire::reaclib::ReactionRecord::chapter'],['../classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629',1,'gridfire::reaction::Reaction::chapter()'],['../classgridfire_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629',1,'gridfire::Reaction::chapter()']]],
- ['clear_27',['clear',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a05f71d318564d880079fd6c96d59ae21',1,'gridfire::reaction::TemplatedReactionSet']]],
- ['clone_28',['clone',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a',1,'gridfire::partition::CompositePartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d',1,'gridfire::partition::PartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4',1,'gridfire::partition::GroundStatePartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6',1,'gridfire::partition::RauscherThielemannPartitionFunction::clone()'],['../class_py_partition_function.html#af918b357e38fb82499ad53584557c43d',1,'PyPartitionFunction::clone()']]],
- ['code_20architecture_20and_20logical_20flow_29',['Code Architecture and Logical Flow',['../index.html#autotoc_md9',1,'']]],
- ['coeffs_30',['coeffs',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0',1,'gridfire::reaclib::ReactionRecord']]],
- ['collect_31',['collect',['../classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e',1,'gridfire::DefinedEngineView']]],
- ['collectatomicreverserateatomicbases_32',['collectAtomicReverseRateAtomicBases',['../classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746',1,'gridfire::GraphEngine']]],
- ['collectnetworkspecies_33',['collectNetworkSpecies',['../classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa',1,'gridfire::GraphEngine']]],
- ['common_20platforms_34',['Dependency Installation on Common Platforms',['../index.html#autotoc_md4',1,'']]],
- ['common_20workflow_20example_35',['Common Workflow Example',['../index.html#autotoc_md21',1,'']]],
- ['compositepartitionfunction_36',['CompositePartitionFunction',['../classgridfire_1_1partition_1_1_composite_partition_function.html',1,'gridfire::partition::CompositePartitionFunction'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#ad80743933712de627c6a69d06d42ceb5',1,'gridfire::partition::CompositePartitionFunction::CompositePartitionFunction(const std::vector< BasePartitionType > &partitionFunctions)'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#ac1bc5bedabef400fab6aceb477dbc6b9',1,'gridfire::partition::CompositePartitionFunction::CompositePartitionFunction(const CompositePartitionFunction &other)']]],
- ['composition_37',['Engine Composition',['../engine_8h.html#EngineComposition',1,'']]],
- ['composition_38',['composition',['../structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1',1,'gridfire::NetIn::composition'],['../structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a',1,'gridfire::NetOut::composition']]],
- ['compute_5fand_5fcache_39',['compute_and_cache',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
- ['con_5fstype_5fregister_5fgraph_5fengine_5fbindings_40',['con_stype_register_graph_engine_bindings',['../engine_2bindings_8cpp.html#a61b016667b7477d898be2a2a5bc7cab8',1,'con_stype_register_graph_engine_bindings(pybind11::module &m): bindings.cpp'],['../engine_2bindings_8h.html#a61b016667b7477d898be2a2a5bc7cab8',1,'con_stype_register_graph_engine_bindings(pybind11::module &m): bindings.cpp']]],
- ['config_41',['Config',['../classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3',1,'gridfire::AdaptiveEngineView::Config'],['../classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187',1,'gridfire::FileDefinedEngineView::Config'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036',1,'gridfire::io::SimpleReactionListFileParser::Config'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b',1,'gridfire::io::MESANetworkFileParser::Config']]],
- ['configuration_20options_42',['GraphEngine Configuration Options',['../index.html#autotoc_md10',1,'']]],
- ['constants_43',['constants',['../structgridfire_1_1_graph_engine_1_1constants.html',1,'gridfire::GraphEngine']]],
- ['constructcandidategroups_44',['constructCandidateGroups',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ac206840057bac65b7f7738e6dfd1047a',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['construction_2ecpp_45',['construction.cpp',['../construction_8cpp.html',1,'']]],
- ['construction_2eh_46',['construction.h',['../construction_8h.html',1,'']]],
- ['constructprimingreactionset_47',['constructPrimingReactionSet',['../classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f',1,'gridfire::NetworkPrimingEngineView']]],
- ['constructreactionindexmap_48',['constructReactionIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c',1,'gridfire::AdaptiveEngineView::constructReactionIndexMap()'],['../classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68',1,'gridfire::DefinedEngineView::constructReactionIndexMap()']]],
- ['constructspeciesindexmap_49',['constructSpeciesIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d',1,'gridfire::AdaptiveEngineView::constructSpeciesIndexMap()'],['../classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985',1,'gridfire::DefinedEngineView::constructSpeciesIndexMap()']]],
- ['contains_50',['contains',['../classgridfire_1_1reaction_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b',1,'gridfire::reaction::Reaction::contains()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a7777ecd0f594fdf66ce57d22610fad3c',1,'gridfire::reaction::TemplatedReactionSet::contains(const std::string_view &id) const'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ab8cb5fbce6b819b9e4e44b0c2db54c6f',1,'gridfire::reaction::TemplatedReactionSet::contains(const Reaction &reaction) const'],['../classgridfire_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b',1,'gridfire::Reaction::contains()']]],
- ['contains_5fproduct_51',['contains_product',['../classgridfire_1_1reaction_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2',1,'gridfire::reaction::Reaction::contains_product()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a443ec5d7138764b32975232e13071ccf',1,'gridfire::reaction::TemplatedReactionSet::contains_product()'],['../classgridfire_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2',1,'gridfire::Reaction::contains_product()']]],
- ['contains_5freactant_52',['contains_reactant',['../classgridfire_1_1reaction_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45',1,'gridfire::reaction::Reaction::contains_reactant()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac42606350d7557106f7954b1f114c128',1,'gridfire::reaction::TemplatedReactionSet::contains_reactant()'],['../classgridfire_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45',1,'gridfire::Reaction::contains_reactant()']]],
- ['contains_5fspecies_53',['contains_species',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad870856d206d93f27125c88d44ff9e34',1,'gridfire::reaction::TemplatedReactionSet']]],
- ['convert_5fnetin_54',['convert_netIn',['../classgridfire_1_1approx8_1_1_approx8_network.html#a56426da6f1af7eb8a6d1cc70bc8e742a',1,'gridfire::approx8::Approx8Network']]],
- ['culling_55',['culling',['../structgridfire_1_1_net_in.html#a6a5e909b46094ffa20da9a3da906e43f',1,'gridfire::NetIn']]],
- ['cullreactionsbyflow_56',['cullReactionsByFlow',['../classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08',1,'gridfire::AdaptiveEngineView']]]
+ ['3_20step_20by_20step_20example_0',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md31',1,'']]]
];
diff --git a/docs/html/search/all_3.js b/docs/html/search/all_3.js
index b64bc6a2..1100a2d3 100644
--- a/docs/html/search/all_3.js
+++ b/docs/html/search/all_3.js
@@ -1,18 +1,4 @@
var searchData=
[
- ['data_0',['data',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]],
- ['definedengineview_1',['DefinedEngineView',['../classgridfire_1_1_defined_engine_view.html',1,'gridfire::DefinedEngineView'],['../classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92',1,'gridfire::DefinedEngineView::DefinedEngineView()']]],
- ['definedengineview_20example_2',['DefinedEngineView Example',['../engine_8h.html#DefinedEngineViewExample',1,'']]],
- ['density_3',['density',['../structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577',1,'gridfire::NetIn::density'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc',1,'gridfire::exceptions::StaleEngineTrigger::density()']]],
- ['dependency_20installation_20on_20common_20platforms_4',['Dependency Installation on Common Platforms',['../index.html#autotoc_md4',1,'']]],
- ['design_5',['Engine Design',['../engine_8h.html#EngineDesign',1,'']]],
- ['developer_20workflow_6',['Developer Workflow',['../index.html#autotoc_md8',1,'']]],
- ['df_7',['df',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
- ['directnetworksolver_8',['DirectNetworkSolver',['../index.html#autotoc_md15',1,'Algorithmic Workflow in DirectNetworkSolver'],['../classgridfire_1_1solver_1_1_direct_network_solver.html',1,'gridfire::solver::DirectNetworkSolver']]],
- ['directnetworksolver_20implicit_20rosenbrock_20method_9',['DirectNetworkSolver (Implicit Rosenbrock Method)',['../index.html#autotoc_md14',1,'']]],
- ['dp_5frate_10',['dp_rate',['../namespacegridfire_1_1approx8.html#a51d139de74680c8437d20a3fa622200c',1,'gridfire::approx8']]],
- ['dt0_11',['dt0',['../structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a',1,'gridfire::NetIn']]],
- ['dydt_12',['dydt',['../structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d',1,'gridfire::StepDerivatives']]],
- ['dynamicengine_13',['DynamicEngine',['../classgridfire_1_1_dynamic_engine.html',1,'gridfire']]],
- ['dynamicnetworksolverstrategy_14',['DynamicNetworkSolverStrategy',['../namespacegridfire_1_1solver.html#a8118d08bc25e439754b43a3f5ecc1db3',1,'gridfire::solver']]]
+ ['4_20visualizing_20reaction_20networks_0',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md33',1,'']]]
];
diff --git a/docs/html/search/all_4.js b/docs/html/search/all_4.js
index d6fdb791..24bdd050 100644
--- a/docs/html/search/all_4.js
+++ b/docs/html/search/all_4.js
@@ -1,51 +1,4 @@
var searchData=
[
- ['eigenfunctor_0',['EigenFunctor',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a1aa29df77925443796e1e59c1b7b7a60',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::EigenFunctor()']]],
- ['end_1',['end',['../classgridfire_1_1reaction_1_1_logical_reaction.html#af8d23557326e6c8499fa4919ac0bd972',1,'gridfire::reaction::LogicalReaction::end()'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a054994f733b44293b4d79f3a9b207560',1,'gridfire::reaction::LogicalReaction::end() const'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad19adbee44a71559a53785e3b1fc7e92',1,'gridfire::reaction::TemplatedReactionSet::end()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac128da7417955ef8c5cb2bde5a1293c9',1,'gridfire::reaction::TemplatedReactionSet::end() const']]],
- ['energy_2',['energy',['../structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b',1,'gridfire::NetIn::energy'],['../structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6',1,'gridfire::NetOut::energy'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf',1,'gridfire::exceptions::StaleEngineTrigger::energy()']]],
- ['engine_3',['Engine',['../classgridfire_1_1_engine.html',1,'gridfire']]],
- ['engine_20composition_4',['Engine Composition',['../engine_8h.html#EngineComposition',1,'']]],
- ['engine_20design_5',['Engine Design',['../engine_8h.html#EngineDesign',1,'']]],
- ['engine_20views_6',['Engine Views',['../index.html#autotoc_md12',1,'']]],
- ['engine_2eh_7',['engine.h',['../engine_8h.html',1,'']]],
- ['engine_5fabstract_2eh_8',['engine_abstract.h',['../engine__abstract_8h.html',1,'']]],
- ['engine_5fadaptive_2ecpp_9',['engine_adaptive.cpp',['../engine__adaptive_8cpp.html',1,'']]],
- ['engine_5fadaptive_2eh_10',['engine_adaptive.h',['../engine__adaptive_8h.html',1,'']]],
- ['engine_5fapprox8_2ecpp_11',['engine_approx8.cpp',['../engine__approx8_8cpp.html',1,'']]],
- ['engine_5fapprox8_2eh_12',['engine_approx8.h',['../engine__approx8_8h.html',1,'']]],
- ['engine_5fdefined_2ecpp_13',['engine_defined.cpp',['../engine__defined_8cpp.html',1,'']]],
- ['engine_5fdefined_2eh_14',['engine_defined.h',['../engine__defined_8h.html',1,'']]],
- ['engine_5fgraph_2ecpp_15',['engine_graph.cpp',['../engine__graph_8cpp.html',1,'']]],
- ['engine_5fgraph_2eh_16',['engine_graph.h',['../engine__graph_8h.html',1,'']]],
- ['engine_5fmultiscale_2ecpp_17',['engine_multiscale.cpp',['../engine__multiscale_8cpp.html',1,'']]],
- ['engine_5fmultiscale_2eh_18',['engine_multiscale.h',['../engine__multiscale_8h.html',1,'']]],
- ['engine_5fpriming_2ecpp_19',['engine_priming.cpp',['../engine__priming_8cpp.html',1,'']]],
- ['engine_5fpriming_2eh_20',['engine_priming.h',['../engine__priming_8h.html',1,'']]],
- ['engine_5fprocedures_2eh_21',['engine_procedures.h',['../engine__procedures_8h.html',1,'']]],
- ['engine_5ftypes_2eh_22',['engine_types.h',['../engine__types_8h.html',1,'']]],
- ['engine_5fview_5fabstract_2eh_23',['engine_view_abstract.h',['../engine__view__abstract_8h.html',1,'']]],
- ['engine_5fviews_2eh_24',['engine_views.h',['../engine__views_8h.html',1,'']]],
- ['engineerror_25',['EngineError',['../classgridfire_1_1exceptions_1_1_engine_error.html',1,'gridfire::exceptions::EngineError'],['../structgridfire_1_1expectations_1_1_engine_error.html',1,'gridfire::expectations::EngineError'],['../structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa',1,'gridfire::expectations::EngineError::EngineError()']]],
- ['engineerrortypes_26',['EngineErrorTypes',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87c',1,'gridfire::expectations']]],
- ['engineindexerror_27',['EngineIndexError',['../structgridfire_1_1expectations_1_1_engine_index_error.html',1,'gridfire::expectations::EngineIndexError'],['../structgridfire_1_1expectations_1_1_engine_index_error.html#ab44bba2a197d43319e65cd200cd347b0',1,'gridfire::expectations::EngineIndexError::EngineIndexError()']]],
- ['engines_28',['Available Engines',['../engine_8h.html#AvailableEngines',1,'']]],
- ['enginetype_29',['EngineType',['../conceptgridfire_1_1_engine_type.html',1,'gridfire']]],
- ['engineview_30',['EngineView',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
- ['engineview_3c_20dynamicengine_20_3e_31',['EngineView< DynamicEngine >',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
- ['engineview_3c_20gridfire_3a_3adynamicengine_20_3e_32',['EngineView< gridfire::DynamicEngine >',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
- ['engineview_3c_20gridfire_3a_3aengine_20_3e_33',['EngineView< gridfire::Engine >',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
- ['equilibratenetwork_34',['equilibrateNetwork',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d',1,'gridfire::MultiscalePartitioningEngineView::equilibrateNetwork(const std::vector< double > &Y, double T9, double rho)'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc',1,'gridfire::MultiscalePartitioningEngineView::equilibrateNetwork(const NetIn &netIn)']]],
- ['error_5fengine_2eh_35',['error_engine.h',['../error__engine_8h.html',1,'']]],
- ['evaluate_36',['evaluate',['../classgridfire_1_1approx8_1_1_approx8_network.html#a888734a3cdde4259e921e2efece411ee',1,'gridfire::approx8::Approx8Network::evaluate()'],['../classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c',1,'gridfire::Network::evaluate()'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b',1,'gridfire::partition::CompositePartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817',1,'gridfire::partition::PartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5',1,'gridfire::partition::GroundStatePartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681',1,'gridfire::partition::RauscherThielemannPartitionFunction::evaluate()'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f',1,'gridfire::solver::NetworkSolverStrategy::evaluate()'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a',1,'gridfire::solver::DirectNetworkSolver::evaluate()'],['../class_py_partition_function.html#a83aca0bc261734b7d3df8269f730c69b',1,'PyPartitionFunction::evaluate()'],['../class_py_dynamic_network_solver_strategy.html#a2095abb83ed6229ebb27b4883cec51c4',1,'PyDynamicNetworkSolverStrategy::evaluate()']]],
- ['evaluatederivative_37',['evaluateDerivative',['../classgridfire_1_1partition_1_1_composite_partition_function.html#ac8900afaa5edd24fcb8eaf19e7379183',1,'gridfire::partition::CompositePartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_partition_function.html#a14009bdaca47f3eddf2c6c023845db5a',1,'gridfire::partition::PartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0eff10c7b134d9d4081ad72bbc785c5b',1,'gridfire::partition::GroundStatePartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aaa1e11579b44a88c5f18943cc303c4b4',1,'gridfire::partition::RauscherThielemannPartitionFunction::evaluateDerivative()'],['../class_py_partition_function.html#a260df9689bf698970ebf5104977a3dcf',1,'PyPartitionFunction::evaluateDerivative()']]],
- ['example_38',['Example',['../engine_8h.html#AdaptiveEngineViewExample',1,'AdaptiveEngineView Example'],['../index.html#autotoc_md21',1,'Common Workflow Example'],['../engine_8h.html#DefinedEngineViewExample',1,'DefinedEngineView Example'],['../engine_8h.html#GraphEngineExample',1,'GraphEngine Example'],['../engine_8h.html#MultiscalePartitioningEngineViewExample',1,'MultiscalePartitioningEngineView Example'],['../engine_8h.html#NetworkPrimingEngineViewExample',1,'NetworkPrimingEngineView Example'],['../index.html#autotoc_md20',1,'Python Example']]],
- ['example_3a_20adaptive_20network_20view_39',['C++ Example: Adaptive Network View',['../index.html#autotoc_md19',1,'']]],
- ['example_3a_20graphengine_20initialization_40',['C++ Example: GraphEngine Initialization',['../index.html#autotoc_md18',1,'']]],
- ['examples_41',['Examples',['../engine_8h.html#UsageExamples',1,'Usage Examples'],['../index.html#autotoc_md17',1,'Usage Examples']]],
- ['exceptions_2eh_42',['exceptions.h',['../exceptions_8h.html',1,'']]],
- ['excess_5fenergy_43',['excess_energy',['../classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5',1,'gridfire::reaction::Reaction::excess_energy()'],['../classgridfire_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5',1,'gridfire::Reaction::excess_energy()']]],
- ['expectations_2eh_44',['expectations.h',['../expectations_8h.html',1,'']]],
- ['expected_5fengine_2eh_45',['expected_engine.h',['../expected__engine_8h.html',1,'']]],
- ['exporttocsv_46',['exportToCSV',['../classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95',1,'gridfire::GraphEngine']]],
- ['exporttodot_47',['exportToDot',['../classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929',1,'gridfire::GraphEngine::exportToDot()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18',1,'gridfire::MultiscalePartitioningEngineView::exportToDot()']]]
+ ['5_20beyond_20the_20basics_0',['5. Beyond the Basics',['../md_docs_2static_2usage.html#autotoc_md35',1,'']]]
];
diff --git a/docs/html/search/all_5.js b/docs/html/search/all_5.js
index b85bdb41..eb917eaf 100644
--- a/docs/html/search/all_5.js
+++ b/docs/html/search/all_5.js
@@ -1,27 +1,37 @@
var searchData=
[
- ['failed_5fto_5ffinalize_5fcomposition_0',['FAILED_TO_FINALIZE_COMPOSITION',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f',1,'gridfire']]],
- ['failed_5fto_5ffind_5fcreation_5fchannel_1',['FAILED_TO_FIND_CREATION_CHANNEL',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a',1,'gridfire']]],
- ['failed_5fto_5ffind_5fpriming_5freactions_2',['FAILED_TO_FIND_PRIMING_REACTIONS',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931',1,'gridfire']]],
- ['failedtopartitionengineerror_3',['FailedToPartitionEngineError',['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html',1,'gridfire::exceptions::FailedToPartitionEngineError'],['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a9b9e8752798876d34a444f61fc2f509a',1,'gridfire::exceptions::FailedToPartitionEngineError::FailedToPartitionEngineError()']]],
- ['failure_4',['FAILURE',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca36fc6065a3e970bc3e6b2e59da52bf2a',1,'gridfire::expectations']]],
- ['fifthorder_5',['FifthOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a5105376c2b90747e00bed5bf2953dd56',1,'gridfire']]],
- ['filedefinedengineview_6',['FileDefinedEngineView',['../classgridfire_1_1_file_defined_engine_view.html',1,'gridfire::FileDefinedEngineView'],['../classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd',1,'gridfire::FileDefinedEngineView::FileDefinedEngineView()']]],
- ['finalizeactiveset_7',['finalizeActiveSet',['../classgridfire_1_1_adaptive_engine_view.html#aa79fb382c98461b02a2c30668491e6c5',1,'gridfire::AdaptiveEngineView']]],
- ['find_8',['find',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a12058e121981294f447e69a467fd84cd',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
- ['finddominantcreationchannel_9',['findDominantCreationChannel',['../namespacegridfire.html#aefc63ddbfe97dcb4178c94dfd1c4b256',1,'gridfire']]],
- ['findreachablespecies_10',['findReachableSpecies',['../classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b',1,'gridfire::AdaptiveEngineView']]],
- ['flow_11',['Code Architecture and Logical Flow',['../index.html#autotoc_md9',1,'']]],
- ['flowrate_12',['flowRate',['../structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a6c2e9087f6c8af5d89a5f0de7bd4a5b4',1,'gridfire::AdaptiveEngineView::ReactionFlow']]],
- ['for_5fsparse_5fjac_13',['for_sparse_jac',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4',1,'gridfire::GraphEngine::AtomicReverseRate']]],
- ['formatnucleartimescalelogstring_14',['formatNuclearTimescaleLogString',['../namespacegridfire_1_1utils.html#af56693a70d9e2b40c8ae2c3bcd4b26c8',1,'gridfire::utils']]],
- ['formatstringlookup_15',['FormatStringLookup',['../namespacegridfire.html#a4e9cabad30b57d636c2f0d73d8cc6bb4',1,'gridfire']]],
- ['forward_16',['forward',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0',1,'gridfire::GraphEngine::AtomicReverseRate']]],
- ['fourthorder_17',['FourthOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a100e3bf0197221c19b222badf42aa964',1,'gridfire']]],
- ['front_18',['FRONT',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
- ['full_19',['Full',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75',1,'gridfire']]],
- ['full_5fsuccess_20',['FULL_SUCCESS',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a',1,'gridfire']]],
- ['functions_21',['Available Partition Functions',['../index.html#autotoc_md11',1,'']]],
- ['funding_22',['Funding',['../index.html#autotoc_md1',1,'']]],
- ['future_20solver_20implementations_23',['Future Solver Implementations',['../index.html#autotoc_md16',1,'']]]
+ ['a_0',['a',['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a677505655a1c6922dfa9b32b70d7e815',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord']]],
+ ['a0_1',['a0',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2fa6b65e300dcd181222b743c2b3d6ed',1,'gridfire::reaction::RateCoefficientSet']]],
+ ['a1_2',['a1',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ace9dbd928e179784e47eaa108ce8d721',1,'gridfire::reaction::RateCoefficientSet']]],
+ ['a2_3',['a2',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a2a9316d19bc2e8bf0a7872eb6fe8a53f',1,'gridfire::reaction::RateCoefficientSet']]],
+ ['a3_4',['a3',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a3d047485ebb57d6c763adfe4aae493b1',1,'gridfire::reaction::RateCoefficientSet']]],
+ ['a4_5',['a4',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#ae57b2eac71cb4ed9947f40c9cb8fc3ca',1,'gridfire::reaction::RateCoefficientSet']]],
+ ['a5_6',['a5',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a8c79db4e649b4eb1d29c43ebe4e95458',1,'gridfire::reaction::RateCoefficientSet']]],
+ ['a6_7',['a6',['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#adf8e6ed7f91cb9e15d1469a808b1877a',1,'gridfire::reaction::RateCoefficientSet']]],
+ ['abs_5fstype_5fregister_5fdynamic_5fengine_5fbindings_8',['abs_stype_register_dynamic_engine_bindings',['../engine_2bindings_8cpp.html#a4066aaf2dca39ee1ed37ad53169f1cdf',1,'abs_stype_register_dynamic_engine_bindings(pybind11::module &m): bindings.cpp'],['../engine_2bindings_8h.html#a4066aaf2dca39ee1ed37ad53169f1cdf',1,'abs_stype_register_dynamic_engine_bindings(pybind11::module &m): bindings.cpp']]],
+ ['abs_5fstype_5fregister_5fengine_5fbindings_9',['abs_stype_register_engine_bindings',['../engine_2bindings_8cpp.html#a01ff627d4ef6a21b3323cd383dd29841',1,'abs_stype_register_engine_bindings(pybind11::module &m): bindings.cpp'],['../engine_2bindings_8h.html#a01ff627d4ef6a21b3323cd383dd29841',1,'abs_stype_register_engine_bindings(pybind11::module &m): bindings.cpp']]],
+ ['adaptive_20network_20view_10',['C++ Example: Adaptive Network View',['../index.html#autotoc_md19',1,'']]],
+ ['adaptiveengineview_11',['AdaptiveEngineView',['../classgridfire_1_1_adaptive_engine_view.html',1,'gridfire::AdaptiveEngineView'],['../classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455',1,'gridfire::AdaptiveEngineView::AdaptiveEngineView()']]],
+ ['adaptiveengineview_20example_12',['AdaptiveEngineView Example',['../engine_8h.html#AdaptiveEngineViewExample',1,'']]],
+ ['add_5freaction_13',['add_reaction',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a14a24cb8ea25a1514134acc51197f1de',1,'gridfire::reaction::LogicalReaction::add_reaction()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a339dbbf883b6ae20e33d9782d8376bcf',1,'gridfire::reaction::TemplatedReactionSet::add_reaction()']]],
+ ['addouble_14',['ADDouble',['../classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d',1,'gridfire::screening::ScreeningModel::ADDouble'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96',1,'gridfire::screening::BareScreeningModel::ADDouble'],['../namespacegridfire.html#a1121d0b2d005195333412559fa29d3cc',1,'gridfire::ADDouble'],['../namespacegridfire_1_1screening.html#ae7dd1a7ccb7bf3c05084094ab008d8a3',1,'gridfire::screening::ADDouble'],['../py__screening_8cpp.html#a4c5a7b887f31226ce0b82409f819833b',1,'ADDouble: py_screening.cpp']]],
+ ['affected_5fspecies_5findices_15',['affected_species_indices',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3e2e67e532970738d20491ea56b170f3',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+ ['aion_16',['aIon',['../structgridfire_1_1approx8_1_1_approx8_net.html#a296e54c1b22f0c5d4d07a13577c6e069',1,'gridfire::approx8::Approx8Net']]],
+ ['algebraic_5findices_17',['algebraic_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ab11be6e7afeef1ac9e4314ad8345e0b0',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+ ['algorithmic_20workflow_20in_20directnetworksolver_18',['Algorithmic Workflow in DirectNetworkSolver',['../index.html#autotoc_md15',1,'']]],
+ ['all_19',['All',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505ab1c94ca2fbc3e78fc30069c8d0f01680',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+ ['all_5fspecies_20',['all_species',['../classgridfire_1_1reaction_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224',1,'gridfire::reaction::Reaction::all_species()'],['../classgridfire_1_1_reaction.html#a7dc8fda87e0581fde6da0a81cf4d7224',1,'gridfire::Reaction::all_species()']]],
+ ['analyzetimescalepoolconnectivity_21',['analyzeTimescalePoolConnectivity',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#af13e764c118a6cc51847384e9c70e05b',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['and_20installation_22',['Python Bindings and Installation',['../index.html#autotoc_md7',1,'']]],
+ ['and_20installation_20instructions_23',['Build and Installation Instructions',['../index.html#autotoc_md2',1,'']]],
+ ['and_20logical_20flow_24',['Code Architecture and Logical Flow',['../index.html#autotoc_md9',1,'']]],
+ ['and_20views_25',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md29',1,'']]],
+ ['approx8_26',['APPROX8',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea',1,'gridfire']]],
+ ['approx8net_27',['Approx8Net',['../structgridfire_1_1approx8_1_1_approx8_net.html',1,'gridfire::approx8']]],
+ ['approx8network_28',['Approx8Network',['../classgridfire_1_1approx8_1_1_approx8_network.html',1,'gridfire::approx8::Approx8Network'],['../classgridfire_1_1approx8_1_1_approx8_network.html#a65066078081c544be4e56e25eb407c8b',1,'gridfire::approx8::Approx8Network::Approx8Network()']]],
+ ['architecture_20and_20logical_20flow_29',['Code Architecture and Logical Flow',['../index.html#autotoc_md9',1,'']]],
+ ['atomicreverserate_30',['AtomicReverseRate',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html',1,'gridfire::GraphEngine::AtomicReverseRate'],['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf',1,'gridfire::GraphEngine::AtomicReverseRate::AtomicReverseRate()']]],
+ ['available_20engines_31',['Available Engines',['../engine_8h.html#AvailableEngines',1,'']]],
+ ['available_20partition_20functions_32',['Available Partition Functions',['../index.html#autotoc_md11',1,'']]],
+ ['available_20views_33',['Available Views',['../engine_8h.html#AvailableViews',1,'']]]
];
diff --git a/docs/html/search/all_6.js b/docs/html/search/all_6.js
index 00c904db..23aab125 100644
--- a/docs/html/search/all_6.js
+++ b/docs/html/search/all_6.js
@@ -1,53 +1,25 @@
var searchData=
[
- ['g_5fnorm_5fhigh_0',['G_norm_high',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a3cb7ee6f3031997aab99c5502b61d90e',1,'gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints']]],
- ['g_5fnorm_5flow_1',['G_norm_low',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a7d291ba80f958fe34ae72b21c6fab380',1,'gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints']]],
- ['generatejacobianmatrix_2',['GenerateJacobianMatrix',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9e720102de6020a01552bc0e8935c566',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
- ['generatejacobianmatrix_3',['generateJacobianMatrix',['../classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d',1,'gridfire::DynamicEngine::generateJacobianMatrix(const std::vector< double > &Y_dynamic, double T9, double rho) const =0'],['../classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7',1,'gridfire::DynamicEngine::generateJacobianMatrix(const std::vector< double > &Y_dynamic, double T9, double rho, const SparsityPattern &sparsityPattern) const'],['../classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119',1,'gridfire::GraphEngine::generateJacobianMatrix(const std::vector< double > &Y_dynamic, const double T9, const double rho) const override'],['../classgridfire_1_1_graph_engine.html#a9687eef88c97eeb7f8680acb230f8ac1',1,'gridfire::GraphEngine::generateJacobianMatrix(const std::vector< double > &Y_dynamic, double T9, double rho, const SparsityPattern &sparsityPattern) const override'],['../classgridfire_1_1_adaptive_engine_view.html#a03fc187d3d306b9058103b9522cbbaeb',1,'gridfire::AdaptiveEngineView::generateJacobianMatrix()'],['../classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae',1,'gridfire::DefinedEngineView::generateJacobianMatrix()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#acdf5ad8765290ea2b78170235aea391d',1,'gridfire::MultiscalePartitioningEngineView::generateJacobianMatrix()'],['../class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d',1,'PyDynamicEngine::generateJacobianMatrix(const std::vector< double > &Y_dynamic, double T9, double rho) const override'],['../class_py_dynamic_engine.html#aa0f1fd3f0c0185395193d1b6897d64c5',1,'PyDynamicEngine::generateJacobianMatrix(const std::vector< double > &Y_dynamic, double T9, double rho, const gridfire::SparsityPattern &sparsityPattern) const override']]],
- ['generatestoichiometrymatrix_4',['generateStoichiometryMatrix',['../classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f',1,'gridfire::DynamicEngine::generateStoichiometryMatrix()'],['../classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38',1,'gridfire::GraphEngine::generateStoichiometryMatrix()'],['../classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111',1,'gridfire::AdaptiveEngineView::generateStoichiometryMatrix()'],['../classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6',1,'gridfire::DefinedEngineView::generateStoichiometryMatrix()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a',1,'gridfire::MultiscalePartitioningEngineView::generateStoichiometryMatrix()'],['../class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9',1,'PyDynamicEngine::generateStoichiometryMatrix()']]],
- ['get_5fall_5freactions_5',['get_all_reactions',['../namespacegridfire_1_1reaclib.html#a91c7971c9d0a2971b9a6fa4d841c761d',1,'gridfire::reaclib']]],
- ['get_5finterpolation_5fpoints_6',['get_interpolation_points',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3baed110ab1b12e22071dc2d92c55db9',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
- ['get_5ft9_5farray_7',['get_T9_array',['../namespacegridfire_1_1approx8.html#a20f9c48e60a5abf0b6868d1d05080222',1,'gridfire::approx8']]],
- ['getbaseengine_8',['getBaseEngine',['../classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c',1,'gridfire::AdaptiveEngineView::getBaseEngine()'],['../classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484',1,'gridfire::DefinedEngineView::getBaseEngine()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1',1,'gridfire::MultiscalePartitioningEngineView::getBaseEngine()'],['../classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6',1,'gridfire::EngineView::getBaseEngine()'],['../class_py_engine_view.html#a3cd83dc57b521c65a14edf70357a8845',1,'PyEngineView::getBaseEngine()'],['../class_py_dynamic_engine_view.html#a51680b135cfc3eea40daf9ef5aa903e0',1,'PyDynamicEngineView::getBaseEngine()']]],
- ['getdepth_9',['getDepth',['../classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9',1,'gridfire::DynamicEngine::getDepth()'],['../classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4',1,'gridfire::GraphEngine::getDepth()'],['../class_py_dynamic_engine.html#adba68716d832b6100e08d32fbc36f13c',1,'PyDynamicEngine::getDepth()']]],
- ['getdynamicspecies_10',['getDynamicSpecies',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['getfastspecies_11',['getFastSpecies',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['getformat_12',['getFormat',['../classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118',1,'gridfire::Network']]],
- ['getjacobianmatrixentry_13',['getJacobianMatrixEntry',['../classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07',1,'gridfire::DynamicEngine::getJacobianMatrixEntry()'],['../classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c',1,'gridfire::GraphEngine::getJacobianMatrixEntry()'],['../classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58',1,'gridfire::AdaptiveEngineView::getJacobianMatrixEntry()'],['../classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b',1,'gridfire::DefinedEngineView::getJacobianMatrixEntry()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ac961484383e86d9712a424728e068633',1,'gridfire::MultiscalePartitioningEngineView::getJacobianMatrixEntry()'],['../class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159',1,'PyDynamicEngine::getJacobianMatrixEntry()']]],
- ['getmolarabundance_14',['getMolarAbundance',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea',1,'gridfire::exceptions::StaleEngineTrigger']]],
- ['getnetreactionstoichiometry_15',['getNetReactionStoichiometry',['../classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9',1,'gridfire::GraphEngine']]],
- ['getnetworkfile_16',['getNetworkFile',['../classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718',1,'gridfire::FileDefinedEngineView']]],
- ['getnetworkreactions_17',['getNetworkReactions',['../classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037',1,'gridfire::DynamicEngine::getNetworkReactions()'],['../classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da',1,'gridfire::GraphEngine::getNetworkReactions()'],['../classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c',1,'gridfire::AdaptiveEngineView::getNetworkReactions()'],['../classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d',1,'gridfire::DefinedEngineView::getNetworkReactions()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ad751f2c1306895ee74a61f2071ca96eb',1,'gridfire::MultiscalePartitioningEngineView::getNetworkReactions()'],['../class_py_dynamic_engine.html#a5988cfba247631ba6c00795cafda9a38',1,'PyDynamicEngine::getNetworkReactions()']]],
- ['getnetworkspecies_18',['getNetworkSpecies',['../classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3',1,'gridfire::Engine::getNetworkSpecies()'],['../classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767',1,'gridfire::GraphEngine::getNetworkSpecies()'],['../classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1',1,'gridfire::AdaptiveEngineView::getNetworkSpecies()'],['../classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211',1,'gridfire::DefinedEngineView::getNetworkSpecies()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80',1,'gridfire::MultiscalePartitioningEngineView::getNetworkSpecies()'],['../class_py_engine.html#a2d240423899e039c2ca688e96f8af1f2',1,'PyEngine::getNetworkSpecies()'],['../class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d',1,'PyDynamicEngine::getNetworkSpecies()']]],
- ['getparser_19',['getParser',['../classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f',1,'gridfire::FileDefinedEngineView']]],
- ['getpartitionfunction_20',['getPartitionFunction',['../classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44',1,'gridfire::GraphEngine']]],
- ['getreactionsetspecies_21',['getReactionSetSpecies',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a1596de3439735a45ac344fa85ace6c82',1,'gridfire::reaction::TemplatedReactionSet']]],
- ['getscreeningmodel_22',['getScreeningModel',['../classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0',1,'gridfire::DynamicEngine::getScreeningModel()'],['../classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a',1,'gridfire::GraphEngine::getScreeningModel()'],['../classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f',1,'gridfire::AdaptiveEngineView::getScreeningModel()'],['../classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c',1,'gridfire::DefinedEngineView::getScreeningModel()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82',1,'gridfire::MultiscalePartitioningEngineView::getScreeningModel()'],['../class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5',1,'PyDynamicEngine::getScreeningModel()']]],
- ['getspeciesdestructiontimescales_23',['GetSpeciesDestructionTimescales',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
- ['getspeciesdestructiontimescales_24',['getSpeciesDestructionTimescales',['../classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6',1,'gridfire::DynamicEngine::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_graph_engine.html#aef8f6bde24d27345067b71084330c7da',1,'gridfire::GraphEngine::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_adaptive_engine_view.html#a522e78bce9ff062939572248d57f8cea',1,'gridfire::AdaptiveEngineView::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491',1,'gridfire::DefinedEngineView::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aa38c367ef3c74d012ccd10521cd5a727',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesDestructionTimescales()'],['../class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3',1,'PyDynamicEngine::getSpeciesDestructionTimescales()']]],
- ['getspeciesindex_25',['getSpeciesIndex',['../classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9',1,'gridfire::DynamicEngine::getSpeciesIndex()'],['../classgridfire_1_1_graph_engine.html#a914f6abc61805cddaebcb8f3cf470dda',1,'gridfire::GraphEngine::getSpeciesIndex()'],['../classgridfire_1_1_adaptive_engine_view.html#a9055feb245524a5a9549ace935f059ff',1,'gridfire::AdaptiveEngineView::getSpeciesIndex()'],['../classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3',1,'gridfire::DefinedEngineView::getSpeciesIndex()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a91d32b7197fcb27ee697d5bfde960f3f',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesIndex()'],['../class_py_dynamic_engine.html#a2ee1d745c1c21b9fcb652c96c42f1091',1,'PyDynamicEngine::getSpeciesIndex()']]],
- ['getspeciestimescales_26',['GetSpeciesTimescales',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
- ['getspeciestimescales_27',['getSpeciesTimescales',['../classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813',1,'gridfire::DynamicEngine::getSpeciesTimescales()'],['../classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581',1,'gridfire::GraphEngine::getSpeciesTimescales()'],['../classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9',1,'gridfire::AdaptiveEngineView::getSpeciesTimescales()'],['../classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72',1,'gridfire::DefinedEngineView::getSpeciesTimescales()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a560612347bbd5b7b380e990624d01105',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesTimescales()'],['../class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22',1,'PyDynamicEngine::getSpeciesTimescales()']]],
- ['getstate_28',['getState',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5',1,'gridfire::exceptions::StaleEngineTrigger']]],
- ['getstoichiometrymatrixentry_29',['getStoichiometryMatrixEntry',['../classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f',1,'gridfire::DynamicEngine::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152',1,'gridfire::GraphEngine::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9',1,'gridfire::AdaptiveEngineView::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2',1,'gridfire::DefinedEngineView::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a510b920dea726aef859ac1f6d051807e',1,'gridfire::MultiscalePartitioningEngineView::getStoichiometryMatrixEntry()'],['../class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83',1,'PyDynamicEngine::getStoichiometryMatrixEntry()']]],
- ['graphengine_30',['GraphEngine',['../classgridfire_1_1_graph_engine.html',1,'gridfire::GraphEngine'],['../classgridfire_1_1_graph_engine.html#afad967546b611d9c005268760feb75d5',1,'gridfire::GraphEngine::GraphEngine(const fourdst::composition::Composition &composition, const BuildDepthType=NetworkBuildDepth::Full)'],['../classgridfire_1_1_graph_engine.html#a39d9838ed40bea71ee6c552bb5969026',1,'gridfire::GraphEngine::GraphEngine(const fourdst::composition::Composition &composition, const partition::PartitionFunction &partitionFunction, const BuildDepthType buildDepth=NetworkBuildDepth::Full)'],['../classgridfire_1_1_graph_engine.html#a1e7e851dfa21d41c2dc533ba56fc4c7b',1,'gridfire::GraphEngine::GraphEngine(const reaction::LogicalReactionSet &reactions)']]],
- ['graphengine_20configuration_20options_31',['GraphEngine Configuration Options',['../index.html#autotoc_md10',1,'']]],
- ['graphengine_20example_32',['GraphEngine Example',['../engine_8h.html#GraphEngineExample',1,'']]],
- ['graphengine_20initialization_33',['C++ Example: GraphEngine Initialization',['../index.html#autotoc_md18',1,'']]],
- ['gridfire_34',['GridFire',['../index.html',1,'']]],
- ['gridfire_35',['gridfire',['../namespacegridfire.html',1,'']]],
- ['gridfire_3a_3aapprox8_36',['approx8',['../namespacegridfire_1_1approx8.html',1,'gridfire']]],
- ['gridfire_3a_3aexceptions_37',['exceptions',['../namespacegridfire_1_1exceptions.html',1,'gridfire']]],
- ['gridfire_3a_3aexpectations_38',['expectations',['../namespacegridfire_1_1expectations.html',1,'gridfire']]],
- ['gridfire_3a_3aio_39',['io',['../namespacegridfire_1_1io.html',1,'gridfire']]],
- ['gridfire_3a_3apartition_40',['partition',['../namespacegridfire_1_1partition.html',1,'gridfire']]],
- ['gridfire_3a_3apartition_3a_3arecord_41',['record',['../namespacegridfire_1_1partition_1_1record.html',1,'gridfire::partition']]],
- ['gridfire_3a_3areaclib_42',['reaclib',['../namespacegridfire_1_1reaclib.html',1,'gridfire']]],
- ['gridfire_3a_3areaction_43',['reaction',['../namespacegridfire_1_1reaction.html',1,'gridfire']]],
- ['gridfire_3a_3ascreening_44',['screening',['../namespacegridfire_1_1screening.html',1,'gridfire']]],
- ['gridfire_3a_3asolver_45',['solver',['../namespacegridfire_1_1solver.html',1,'gridfire']]],
- ['gridfire_3a_3autils_46',['utils',['../namespacegridfire_1_1utils.html',1,'gridfire']]],
- ['ground_5fstate_5fspin_47',['ground_state_spin',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aec714697f3f5102124561252233fc350',1,'gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData::ground_state_spin'],['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#acf5c38826050594aee98d746d0ba40b2',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord::ground_state_spin']]],
- ['groundstate_48',['GroundState',['../namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335',1,'gridfire::partition']]],
- ['groundstatepartitionfunction_49',['GroundStatePartitionFunction',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html',1,'gridfire::partition::GroundStatePartitionFunction'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a8afa2aee993eb3ed8d01c887d39b57eb',1,'gridfire::partition::GroundStatePartitionFunction::GroundStatePartitionFunction()']]]
+ ['back_0',['BACK',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329ad8c6323fcc54dfc5319fbd935ae4f75d',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+ ['bare_1',['BARE',['../namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71',1,'gridfire::screening']]],
+ ['barescreeningmodel_2',['BareScreeningModel',['../classgridfire_1_1screening_1_1_bare_screening_model.html',1,'gridfire::screening']]],
+ ['base_5fnetwork_5ftoo_5fshallow_3',['BASE_NETWORK_TOO_SHALLOW',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e',1,'gridfire']]],
+ ['basepartitiontype_4',['BasePartitionType',['../namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728c',1,'gridfire::partition']]],
+ ['basepartitiontypetostring_5',['basePartitionTypeToString',['../namespacegridfire_1_1partition.html#a97237521bc760f7521346f8db472dc8e',1,'gridfire::partition']]],
+ ['basics_6',['5. Beyond the Basics',['../md_docs_2static_2usage.html#autotoc_md35',1,'']]],
+ ['begin_7',['begin',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a4ae3806e5e1a802b86a6de292d043476',1,'gridfire::reaction::LogicalReaction::begin()'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a5d410de1053f8028faed1f0d0a6083f5',1,'gridfire::reaction::LogicalReaction::begin() const'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a87257704009fcd57b553f86cdaacb597',1,'gridfire::reaction::TemplatedReactionSet::begin()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#aee42bb25973dadc6629bdb5cb1db6369',1,'gridfire::reaction::TemplatedReactionSet::begin() const']]],
+ ['beyond_20the_20basics_8',['5. Beyond the Basics',['../md_docs_2static_2usage.html#autotoc_md35',1,'']]],
+ ['bin_9',['bin',['../structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3',1,'gridfire::QSECacheKey']]],
+ ['bindings_20and_20installation_10',['Python Bindings and Installation',['../index.html#autotoc_md7',1,'']]],
+ ['bindings_2ecpp_11',['bindings.cpp',['../bindings_8cpp.html',1,'(Global Namespace)'],['../engine_2bindings_8cpp.html',1,'(Global Namespace)'],['../exceptions_2bindings_8cpp.html',1,'(Global Namespace)'],['../expectations_2bindings_8cpp.html',1,'(Global Namespace)'],['../io_2bindings_8cpp.html',1,'(Global Namespace)'],['../partition_2bindings_8cpp.html',1,'(Global Namespace)'],['../reaction_2bindings_8cpp.html',1,'(Global Namespace)'],['../screening_2bindings_8cpp.html',1,'(Global Namespace)'],['../solver_2bindings_8cpp.html',1,'(Global Namespace)'],['../types_2bindings_8cpp.html',1,'(Global Namespace)'],['../utils_2bindings_8cpp.html',1,'(Global Namespace)']]],
+ ['bindings_2eh_12',['bindings.h',['../engine_2bindings_8h.html',1,'(Global Namespace)'],['../exceptions_2bindings_8h.html',1,'(Global Namespace)'],['../expectations_2bindings_8h.html',1,'(Global Namespace)'],['../io_2bindings_8h.html',1,'(Global Namespace)'],['../partition_2bindings_8h.html',1,'(Global Namespace)'],['../reaction_2bindings_8h.html',1,'(Global Namespace)'],['../screening_2bindings_8h.html',1,'(Global Namespace)'],['../solver_2bindings_8h.html',1,'(Global Namespace)'],['../types_2bindings_8h.html',1,'(Global Namespace)'],['../utils_2bindings_8h.html',1,'(Global Namespace)']]],
+ ['bound_13',['bound',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a5f673ab0425f06f3639cc9b5200ee3af',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]],
+ ['bounds_14',['Bounds',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+ ['build_20and_20installation_20instructions_15',['Build and Installation Instructions',['../index.html#autotoc_md2',1,'']]],
+ ['build_5freaclib_5fnuclear_5fnetwork_16',['build_reaclib_nuclear_network',['../namespacegridfire.html#aedddb89e400a6111f69bfe0c3fd4214e',1,'gridfire::build_reaclib_nuclear_network(const fourdst::composition::Composition &composition, BuildDepthType maxLayers=NetworkBuildDepth::Full, bool reverse=false)'],['../namespacegridfire.html#a745c6568723947f8e1ff874c9d3f4733',1,'gridfire::build_reaclib_nuclear_network(const Composition &composition, BuildDepthType maxLayers, bool reverse)']]],
+ ['buildconnectivitygraph_17',['buildConnectivityGraph',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aae0865e361dfeb23984d70409fdd9f39',1,'gridfire::MultiscalePartitioningEngineView::buildConnectivityGraph(const std::unordered_set< size_t > &fast_reaction_indices) const'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ae3875c61dc916c0982ed122c2e272d94',1,'gridfire::MultiscalePartitioningEngineView::buildConnectivityGraph(const std::vector< size_t > &species_pool) const']]],
+ ['builddepthtype_18',['BuildDepthType',['../namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6',1,'gridfire']]],
+ ['building_20the_20c_20library_19',['Building the C++ Library',['../index.html#autotoc_md5',1,'']]],
+ ['building_2eh_20',['building.h',['../building_8h.html',1,'']]],
+ ['by_20step_20example_21',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md31',1,'']]]
];
diff --git a/docs/html/search/all_7.js b/docs/html/search/all_7.js
index 9f40d7b7..162baf12 100644
--- a/docs/html/search/all_7.js
+++ b/docs/html/search/all_7.js
@@ -1,12 +1,60 @@
var searchData=
[
- ['hash_0',['hash',['../structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d',1,'gridfire::QSECacheKey::hash()'],['../classgridfire_1_1reaction_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5',1,'gridfire::reaction::Reaction::hash()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a272800016c83f259f5c6a92dc797353c',1,'gridfire::reaction::TemplatedReactionSet::hash()'],['../classgridfire_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5',1,'gridfire::Reaction::hash()']]],
- ['hash_3c_20gridfire_3a_3aqsecachekey_20_3e_1',['hash< gridfire::QSECacheKey >',['../structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html',1,'std']]],
- ['hash_3c_20gridfire_3a_3areaction_3a_3alogicalreactionset_20_3e_2',['hash< gridfire::reaction::LogicalReactionSet >',['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html',1,'std']]],
- ['hash_3c_20gridfire_3a_3areaction_3a_3areaction_20_3e_3',['hash< gridfire::reaction::Reaction >',['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html',1,'std']]],
- ['hash_3c_20gridfire_3a_3areaction_3a_3areactionset_20_3e_4',['hash< gridfire::reaction::ReactionSet >',['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html',1,'std']]],
- ['he3he3_5frate_5',['he3he3_rate',['../namespacegridfire_1_1approx8.html#a12cb71ba6ed03750af9e7659464197ea',1,'gridfire::approx8']]],
- ['he3he4_5frate_6',['he3he4_rate',['../namespacegridfire_1_1approx8.html#a593cd66c1eadae4da233ae73b4aad4a3',1,'gridfire::approx8']]],
- ['hit_7',['hit',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5eb642e161ffb5500ccc1e412849ee5e',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
- ['hits_8',['hits',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#aaf8b925a169a732c14f4451a33451f51',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]]
+ ['c_0',['c',['../structgridfire_1_1_graph_engine_1_1constants.html#a8bea6e348699c1aea93d17bb56739306',1,'gridfire::GraphEngine::constants']]],
+ ['c_20example_3a_20adaptive_20network_20view_1',['C++ Example: Adaptive Network View',['../index.html#autotoc_md19',1,'']]],
+ ['c_20example_3a_20graphengine_20initialization_2',['C++ Example: GraphEngine Initialization',['../index.html#autotoc_md18',1,'']]],
+ ['c_20library_3',['Building the C++ Library',['../index.html#autotoc_md5',1,'']]],
+ ['c12a_5frate_4',['c12a_rate',['../namespacegridfire_1_1approx8.html#af7d9b901dbb3c88c151d927912d5121f',1,'gridfire::approx8']]],
+ ['c12c12_5frate_5',['c12c12_rate',['../namespacegridfire_1_1approx8.html#a70eb18e9706ac28a308dcb4fcec7421f',1,'gridfire::approx8']]],
+ ['c12o16_5frate_6',['c12o16_rate',['../namespacegridfire_1_1approx8.html#a8c30b7e6099c5fc2aa94f9c68fd075dc',1,'gridfire::approx8']]],
+ ['c12p_5frate_7',['c12p_rate',['../namespacegridfire_1_1approx8.html#a890ad24c2cdb15fb76a3ff8a7b8d77db',1,'gridfire::approx8']]],
+ ['cachestats_8',['CacheStats',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['calculate_5fforward_5frate_5flog_5fderivative_9',['calculate_forward_rate_log_derivative',['../classgridfire_1_1reaction_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061',1,'gridfire::reaction::Reaction::calculate_forward_rate_log_derivative()'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#aa4b8d0d30459f360ff6e29d848e943d5',1,'gridfire::reaction::LogicalReaction::calculate_forward_rate_log_derivative()'],['../classgridfire_1_1_reaction.html#a3a8ba9212d76d5ce51f20df6892c6061',1,'gridfire::Reaction::calculate_forward_rate_log_derivative()']]],
+ ['calculate_5frate_10',['calculate_rate',['../classgridfire_1_1reaction_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec',1,'gridfire::reaction::Reaction::calculate_rate(const double T9) const'],['../classgridfire_1_1reaction_1_1_reaction.html#a735192a42f72cd68f289493753e1a616',1,'gridfire::reaction::Reaction::calculate_rate(const CppAD::AD< double > T9) const'],['../classgridfire_1_1reaction_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af',1,'gridfire::reaction::Reaction::calculate_rate(const T T9) const'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a1d2fb3b6a6a1860ace98b32447d1dd1b',1,'gridfire::reaction::LogicalReaction::calculate_rate(const double T9) const override'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#adad6f4297c1d8ce487eab092b73cdd32',1,'gridfire::reaction::LogicalReaction::calculate_rate(const CppAD::AD< double > T9) const override'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a019b721d83741acdb16036f00739f87c',1,'gridfire::reaction::LogicalReaction::calculate_rate(const T T9) const'],['../classgridfire_1_1_reaction.html#ad81e9b2a1773470059ca6989c60556ec',1,'gridfire::Reaction::calculate_rate(const double T9) const'],['../classgridfire_1_1_reaction.html#a735192a42f72cd68f289493753e1a616',1,'gridfire::Reaction::calculate_rate(const CppAD::AD< double > T9) const'],['../classgridfire_1_1_reaction.html#a648b9ed6108bed2469dc028fb7e351af',1,'gridfire::Reaction::calculate_rate(const T T9) const']]],
+ ['calculateallderivatives_11',['calculateAllDerivatives',['../classgridfire_1_1_graph_engine.html#af41df9ce979b6410e12642cb093916c9',1,'gridfire::GraphEngine::calculateAllDerivatives(const std::vector< T > &Y_in, T T9, T rho) const'],['../classgridfire_1_1_graph_engine.html#aaf4d54e4b774ab8ec8eabec006579d31',1,'gridfire::GraphEngine::calculateAllDerivatives(const std::vector< double > &Y_in, const double T9, const double rho) const'],['../classgridfire_1_1_graph_engine.html#a71a3d1181b90c3becdc5d9a3da05b9c9',1,'gridfire::GraphEngine::calculateAllDerivatives(const std::vector< ADDouble > &Y_in, const ADDouble &T9, const ADDouble &rho) const']]],
+ ['calculateallderivativesusingprecomputation_12',['calculateAllDerivativesUsingPrecomputation',['../classgridfire_1_1_graph_engine.html#a97f98706b51fbe0d167ed81ffe58c438',1,'gridfire::GraphEngine']]],
+ ['calculateallreactionflows_13',['calculateAllReactionFlows',['../classgridfire_1_1_adaptive_engine_view.html#abdbaf4b87629efe43ac1255dad424c0c',1,'gridfire::AdaptiveEngineView']]],
+ ['calculatecreationrate_14',['calculateCreationRate',['../namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d',1,'gridfire']]],
+ ['calculatedestructionrateconstant_15',['calculateDestructionRateConstant',['../namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2',1,'gridfire']]],
+ ['calculatefactors_5fimpl_16',['calculateFactors_impl',['../classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a',1,'gridfire::screening::BareScreeningModel::calculateFactors_impl()'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#a2695206d46b9d2c2503f8e58c44df88f',1,'gridfire::screening::WeakScreeningModel::calculateFactors_impl()']]],
+ ['calculatemolarreactionflow_17',['CalculateMolarReactionFlow',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+ ['calculatemolarreactionflow_18',['calculateMolarReactionFlow',['../classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785',1,'gridfire::DynamicEngine::calculateMolarReactionFlow()'],['../classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f',1,'gridfire::GraphEngine::calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< double > &Y, const double T9, const double rho) const override'],['../classgridfire_1_1_graph_engine.html#a5e96b5a0b34c8932f0e14eabda57f1a4',1,'gridfire::GraphEngine::calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< T > &Y, const T T9, const T rho) const'],['../classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31',1,'gridfire::AdaptiveEngineView::calculateMolarReactionFlow()'],['../classgridfire_1_1_defined_engine_view.html#a142725470f96cba3edb48a29f1264032',1,'gridfire::DefinedEngineView::calculateMolarReactionFlow()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a79eb9c108d694a27ec913ed0143aa044',1,'gridfire::MultiscalePartitioningEngineView::calculateMolarReactionFlow()'],['../class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a',1,'PyDynamicEngine::calculateMolarReactionFlow()']]],
+ ['calculatereversemolarreactionflow_19',['calculateReverseMolarReactionFlow',['../classgridfire_1_1_graph_engine.html#a17774cd9ffcf1ba94019df766a0984a0',1,'gridfire::GraphEngine']]],
+ ['calculatereverserate_20',['calculateReverseRate',['../classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28',1,'gridfire::GraphEngine']]],
+ ['calculatereverseratetwobody_21',['calculateReverseRateTwoBody',['../classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755',1,'gridfire::GraphEngine']]],
+ ['calculatereverseratetwobodyderivative_22',['calculateReverseRateTwoBodyDerivative',['../classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7',1,'gridfire::GraphEngine']]],
+ ['calculaterhsandenergy_23',['CalculateRHSAndEnergy',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505aafefea58639f78d7c750970bbad28420',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+ ['calculaterhsandenergy_24',['calculateRHSAndEnergy',['../classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb',1,'gridfire::Engine::calculateRHSAndEnergy()'],['../classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081',1,'gridfire::GraphEngine::calculateRHSAndEnergy()'],['../classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5',1,'gridfire::AdaptiveEngineView::calculateRHSAndEnergy()'],['../classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d',1,'gridfire::DefinedEngineView::calculateRHSAndEnergy()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb',1,'gridfire::MultiscalePartitioningEngineView::calculateRHSAndEnergy()'],['../class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d',1,'PyEngine::calculateRHSAndEnergy()'],['../class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a',1,'PyDynamicEngine::calculateRHSAndEnergy()']]],
+ ['calculatescreeningfactors_25',['calculateScreeningFactors',['../classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde',1,'gridfire::screening::ScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const =0'],['../classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22',1,'gridfire::screening::ScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< ADDouble > &Y, const ADDouble T9, const ADDouble rho) const =0'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60',1,'gridfire::screening::BareScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const override'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99',1,'gridfire::screening::BareScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< ADDouble > &Y, const ADDouble T9, const ADDouble rho) const override'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c',1,'gridfire::screening::WeakScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const override'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#ac6bc78769670a460af1ff88284cb8ad4',1,'gridfire::screening::WeakScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< CppAD::AD< double > > &Y, const CppAD::AD< double > T9, const CppAD::AD< double > rho) const override'],['../class_py_screening.html#a2b8756c197eb89e77cb6dd231c979315',1,'PyScreening::calculateScreeningFactors(const gridfire::reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const override'],['../class_py_screening.html#a5539d59311c778cf7f0006acc8f84ade',1,'PyScreening::calculateScreeningFactors(const gridfire::reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< ADDouble > &Y, const ADDouble T9, const ADDouble rho) const override']]],
+ ['chapter_26',['chapter',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc',1,'gridfire::reaclib::ReactionRecord::chapter'],['../classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629',1,'gridfire::reaction::Reaction::chapter()'],['../classgridfire_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629',1,'gridfire::Reaction::chapter()']]],
+ ['clear_27',['clear',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a05f71d318564d880079fd6c96d59ae21',1,'gridfire::reaction::TemplatedReactionSet']]],
+ ['clone_28',['clone',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a',1,'gridfire::partition::CompositePartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d',1,'gridfire::partition::PartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4',1,'gridfire::partition::GroundStatePartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6',1,'gridfire::partition::RauscherThielemannPartitionFunction::clone()'],['../class_py_partition_function.html#af918b357e38fb82499ad53584557c43d',1,'PyPartitionFunction::clone()']]],
+ ['code_20architecture_20and_20logical_20flow_29',['Code Architecture and Logical Flow',['../index.html#autotoc_md9',1,'']]],
+ ['coeffs_30',['coeffs',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0',1,'gridfire::reaclib::ReactionRecord']]],
+ ['collect_31',['collect',['../classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e',1,'gridfire::DefinedEngineView']]],
+ ['collectatomicreverserateatomicbases_32',['collectAtomicReverseRateAtomicBases',['../classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746',1,'gridfire::GraphEngine']]],
+ ['collectnetworkspecies_33',['collectNetworkSpecies',['../classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa',1,'gridfire::GraphEngine']]],
+ ['common_20platforms_34',['Dependency Installation on Common Platforms',['../index.html#autotoc_md4',1,'']]],
+ ['common_20workflow_20example_35',['Common Workflow Example',['../index.html#autotoc_md21',1,'']]],
+ ['compositepartitionfunction_36',['CompositePartitionFunction',['../classgridfire_1_1partition_1_1_composite_partition_function.html',1,'gridfire::partition::CompositePartitionFunction'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#ad80743933712de627c6a69d06d42ceb5',1,'gridfire::partition::CompositePartitionFunction::CompositePartitionFunction(const std::vector< BasePartitionType > &partitionFunctions)'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#ac1bc5bedabef400fab6aceb477dbc6b9',1,'gridfire::partition::CompositePartitionFunction::CompositePartitionFunction(const CompositePartitionFunction &other)']]],
+ ['composition_37',['Engine Composition',['../engine_8h.html#EngineComposition',1,'']]],
+ ['composition_38',['composition',['../structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1',1,'gridfire::NetIn::composition'],['../structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a',1,'gridfire::NetOut::composition']]],
+ ['compute_5fand_5fcache_39',['compute_and_cache',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
+ ['con_5fstype_5fregister_5fgraph_5fengine_5fbindings_40',['con_stype_register_graph_engine_bindings',['../engine_2bindings_8cpp.html#a61b016667b7477d898be2a2a5bc7cab8',1,'con_stype_register_graph_engine_bindings(pybind11::module &m): bindings.cpp'],['../engine_2bindings_8h.html#a61b016667b7477d898be2a2a5bc7cab8',1,'con_stype_register_graph_engine_bindings(pybind11::module &m): bindings.cpp']]],
+ ['config_41',['Config',['../classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3',1,'gridfire::AdaptiveEngineView::Config'],['../classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187',1,'gridfire::FileDefinedEngineView::Config'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036',1,'gridfire::io::SimpleReactionListFileParser::Config'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b',1,'gridfire::io::MESANetworkFileParser::Config']]],
+ ['configuration_20options_42',['GraphEngine Configuration Options',['../index.html#autotoc_md10',1,'']]],
+ ['constants_43',['constants',['../structgridfire_1_1_graph_engine_1_1constants.html',1,'gridfire::GraphEngine']]],
+ ['constructcandidategroups_44',['constructCandidateGroups',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ac206840057bac65b7f7738e6dfd1047a',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['construction_2ecpp_45',['construction.cpp',['../construction_8cpp.html',1,'']]],
+ ['construction_2eh_46',['construction.h',['../construction_8h.html',1,'']]],
+ ['constructprimingreactionset_47',['constructPrimingReactionSet',['../classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f',1,'gridfire::NetworkPrimingEngineView']]],
+ ['constructreactionindexmap_48',['constructReactionIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c',1,'gridfire::AdaptiveEngineView::constructReactionIndexMap()'],['../classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68',1,'gridfire::DefinedEngineView::constructReactionIndexMap()']]],
+ ['constructspeciesindexmap_49',['constructSpeciesIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d',1,'gridfire::AdaptiveEngineView::constructSpeciesIndexMap()'],['../classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985',1,'gridfire::DefinedEngineView::constructSpeciesIndexMap()']]],
+ ['contains_50',['contains',['../classgridfire_1_1reaction_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b',1,'gridfire::reaction::Reaction::contains()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a7777ecd0f594fdf66ce57d22610fad3c',1,'gridfire::reaction::TemplatedReactionSet::contains(const std::string_view &id) const'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ab8cb5fbce6b819b9e4e44b0c2db54c6f',1,'gridfire::reaction::TemplatedReactionSet::contains(const Reaction &reaction) const'],['../classgridfire_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b',1,'gridfire::Reaction::contains()']]],
+ ['contains_5fproduct_51',['contains_product',['../classgridfire_1_1reaction_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2',1,'gridfire::reaction::Reaction::contains_product()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a443ec5d7138764b32975232e13071ccf',1,'gridfire::reaction::TemplatedReactionSet::contains_product()'],['../classgridfire_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2',1,'gridfire::Reaction::contains_product()']]],
+ ['contains_5freactant_52',['contains_reactant',['../classgridfire_1_1reaction_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45',1,'gridfire::reaction::Reaction::contains_reactant()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac42606350d7557106f7954b1f114c128',1,'gridfire::reaction::TemplatedReactionSet::contains_reactant()'],['../classgridfire_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45',1,'gridfire::Reaction::contains_reactant()']]],
+ ['contains_5fspecies_53',['contains_species',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad870856d206d93f27125c88d44ff9e34',1,'gridfire::reaction::TemplatedReactionSet']]],
+ ['convert_5fnetin_54',['convert_netIn',['../classgridfire_1_1approx8_1_1_approx8_network.html#a56426da6f1af7eb8a6d1cc70bc8e742a',1,'gridfire::approx8::Approx8Network']]],
+ ['culling_55',['culling',['../structgridfire_1_1_net_in.html#a6a5e909b46094ffa20da9a3da906e43f',1,'gridfire::NetIn']]],
+ ['cullreactionsbyflow_56',['cullReactionsByFlow',['../classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08',1,'gridfire::AdaptiveEngineView']]]
];
diff --git a/docs/html/search/all_8.js b/docs/html/search/all_8.js
index 32821a4b..9ba2c9f5 100644
--- a/docs/html/search/all_8.js
+++ b/docs/html/search/all_8.js
@@ -1,43 +1,19 @@
var searchData=
[
- ['ic12_0',['ic12',['../structgridfire_1_1approx8_1_1_approx8_net.html#a95b9a07e29285884e6de523f8132f653',1,'gridfire::approx8::Approx8Net']]],
- ['id_1',['id',['../classgridfire_1_1reaction_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905',1,'gridfire::reaction::Reaction::id()'],['../classgridfire_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905',1,'gridfire::Reaction::id()']]],
- ['idensity_2',['iDensity',['../structgridfire_1_1approx8_1_1_approx8_net.html#a562c2383f585d3e9984225584d61c037',1,'gridfire::approx8::Approx8Net']]],
- ['identifiedisotope_3',['IdentifiedIsotope',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
- ['identifymeanslowestpool_4',['identifyMeanSlowestPool',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a54ca8004fbd8d6d3ea6f67efeb5dbc8d',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['ienergy_5',['iEnergy',['../structgridfire_1_1approx8_1_1_approx8_net.html#a18501627dceb5d084bc7ba19f119826f',1,'gridfire::approx8::Approx8Net']]],
- ['ih1_6',['ih1',['../structgridfire_1_1approx8_1_1_approx8_net.html#acc735a17e005f7e25c68a86d9735ec4c',1,'gridfire::approx8::Approx8Net']]],
- ['ihe3_7',['ihe3',['../structgridfire_1_1approx8_1_1_approx8_net.html#ab0a43fee658efcaacfe7e6fb4870569b',1,'gridfire::approx8::Approx8Net']]],
- ['ihe4_8',['ihe4',['../structgridfire_1_1approx8_1_1_approx8_net.html#a82977ad3df7f620e80a6235b3fe64731',1,'gridfire::approx8::Approx8Net']]],
- ['img24_9',['img24',['../structgridfire_1_1approx8_1_1_approx8_net.html#a9647205f52fb0fa21316be39c3a6d709',1,'gridfire::approx8::Approx8Net']]],
- ['implementations_10',['Future Solver Implementations',['../index.html#autotoc_md16',1,'']]],
- ['implicit_20rosenbrock_20method_11',['DirectNetworkSolver (Implicit Rosenbrock Method)',['../index.html#autotoc_md14',1,'']]],
- ['in_20directnetworksolver_12',['Algorithmic Workflow in DirectNetworkSolver',['../index.html#autotoc_md15',1,'']]],
- ['in14_13',['in14',['../structgridfire_1_1approx8_1_1_approx8_net.html#a1af9135867aa3786721b89dbfdc4aee0',1,'gridfire::approx8::Approx8Net']]],
- ['index_14',['INDEX',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87cacb4ae3b37047fb4b2c0d16f8bf84f076',1,'gridfire::expectations']]],
- ['ine20_15',['ine20',['../structgridfire_1_1approx8_1_1_approx8_net.html#ad43418fd8c536ebc814d5e6de555256c',1,'gridfire::approx8::Approx8Net']]],
- ['initialization_16',['C++ Example: GraphEngine Initialization',['../index.html#autotoc_md18',1,'']]],
- ['initializeallreaclibreactions_17',['initializeAllReaclibReactions',['../namespacegridfire_1_1reaclib.html#a02ff11b88be94392151873e06a30b276',1,'gridfire::reaclib']]],
- ['inputs_18',['inputs',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a0adf1074b5e6ba448cedff7563c450d0',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
- ['inputsatcompiletime_19',['InputsAtCompileTime',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a753b594931f9ee122e2079986ad572c9',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
- ['inputtype_20',['InputType',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3ebf684b36e98da38d8ee6f0be4f91e2',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
- ['installation_21',['Python Bindings and Installation',['../index.html#autotoc_md7',1,'']]],
- ['installation_20instructions_22',['Build and Installation Instructions',['../index.html#autotoc_md2',1,'']]],
- ['installation_20on_20common_20platforms_23',['Dependency Installation on Common Platforms',['../index.html#autotoc_md4',1,'']]],
- ['installing_20the_20library_24',['Installing the Library',['../index.html#autotoc_md6',1,'']]],
- ['instructions_25',['Build and Installation Instructions',['../index.html#autotoc_md2',1,'']]],
- ['interpolationpoints_26',['InterpolationPoints',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
- ['involvesspecies_27',['involvesSpecies',['../classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b',1,'gridfire::GraphEngine']]],
- ['io_2eh_28',['io.h',['../io_8h.html',1,'']]],
- ['io16_29',['io16',['../structgridfire_1_1approx8_1_1_approx8_net.html#ab4e95622dc0414ad7e636ef811e600af',1,'gridfire::approx8::Approx8Net']]],
- ['is_5fin_5fequilibrium_30',['is_in_equilibrium',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
- ['is_5freverse_31',['is_reverse',['../classgridfire_1_1reaction_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba',1,'gridfire::reaction::Reaction::is_reverse()'],['../classgridfire_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba',1,'gridfire::Reaction::is_reverse()']]],
- ['isarithmeticorad_32',['IsArithmeticOrAD',['../conceptgridfire_1_1_is_arithmetic_or_a_d.html',1,'gridfire']]],
- ['isdynamicengine_33',['IsDynamicEngine',['../concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html',1,'@012022023301355052304263320136165002200160012126']]],
- ['isotopedata_34',['IsotopeData',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
- ['isprecomputationenabled_35',['isPrecomputationEnabled',['../classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f',1,'gridfire::GraphEngine']]],
- ['isstale_36',['isStale',['../classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398',1,'gridfire::DynamicEngine::isStale()'],['../classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5',1,'gridfire::GraphEngine::isStale()'],['../classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88',1,'gridfire::AdaptiveEngineView::isStale()'],['../classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87',1,'gridfire::DefinedEngineView::isStale()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46',1,'gridfire::MultiscalePartitioningEngineView::isStale()'],['../class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14',1,'PyDynamicEngine::isStale()']]],
- ['isstiff_37',['isStiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#a5b17b2831389829533385900ce19a37a',1,'gridfire::approx8::Approx8Network::isStiff()'],['../classgridfire_1_1_network.html#ae93ad65deba79def4b77d420e7affa0b',1,'gridfire::Network::isStiff()']]],
- ['isusingreversereactions_38',['isUsingReverseReactions',['../classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0',1,'gridfire::GraphEngine']]],
- ['itemp_39',['iTemp',['../structgridfire_1_1approx8_1_1_approx8_net.html#a010df59d40b3bc8a802224968922ebde',1,'gridfire::approx8::Approx8Net']]]
+ ['data_0',['data',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a9b8fc949cc2cb1729c719cf20463e070',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]],
+ ['definedengineview_1',['DefinedEngineView',['../classgridfire_1_1_defined_engine_view.html',1,'gridfire::DefinedEngineView'],['../classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92',1,'gridfire::DefinedEngineView::DefinedEngineView()']]],
+ ['definedengineview_20example_2',['DefinedEngineView Example',['../engine_8h.html#DefinedEngineViewExample',1,'']]],
+ ['density_3',['density',['../structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577',1,'gridfire::NetIn::density'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc',1,'gridfire::exceptions::StaleEngineTrigger::density()']]],
+ ['dependency_20installation_20on_20common_20platforms_4',['Dependency Installation on Common Platforms',['../index.html#autotoc_md4',1,'']]],
+ ['design_5',['Engine Design',['../engine_8h.html#EngineDesign',1,'']]],
+ ['developer_20workflow_6',['Developer Workflow',['../index.html#autotoc_md8',1,'']]],
+ ['development_20from_20source_7',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md27',1,'']]],
+ ['df_8',['df',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+ ['directnetworksolver_9',['DirectNetworkSolver',['../index.html#autotoc_md15',1,'Algorithmic Workflow in DirectNetworkSolver'],['../classgridfire_1_1solver_1_1_direct_network_solver.html',1,'gridfire::solver::DirectNetworkSolver']]],
+ ['directnetworksolver_20implicit_20rosenbrock_20method_10',['DirectNetworkSolver (Implicit Rosenbrock Method)',['../index.html#autotoc_md14',1,'']]],
+ ['dp_5frate_11',['dp_rate',['../namespacegridfire_1_1approx8.html#a51d139de74680c8437d20a3fa622200c',1,'gridfire::approx8']]],
+ ['dt0_12',['dt0',['../structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a',1,'gridfire::NetIn']]],
+ ['dydt_13',['dydt',['../structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d',1,'gridfire::StepDerivatives']]],
+ ['dynamicengine_14',['DynamicEngine',['../classgridfire_1_1_dynamic_engine.html',1,'gridfire']]],
+ ['dynamicnetworksolverstrategy_15',['DynamicNetworkSolverStrategy',['../namespacegridfire_1_1solver.html#a8118d08bc25e439754b43a3f5ecc1db3',1,'gridfire::solver']]]
];
diff --git a/docs/html/search/all_9.js b/docs/html/search/all_9.js
index 327fc316..fc7d4ddc 100644
--- a/docs/html/search/all_9.js
+++ b/docs/html/search/all_9.js
@@ -1,6 +1,52 @@
var searchData=
[
- ['jacobian_0',['Jacobian',['../structgridfire_1_1approx8_1_1_jacobian.html',1,'gridfire::approx8']]],
- ['jacobianfunctor_1',['JacobianFunctor',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::JacobianFunctor()']]],
- ['jacobiantype_2',['JacobianType',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7353c20a6eac2ac0d9d13791577080d',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]]
+ ['eigenfunctor_0',['EigenFunctor',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a1aa29df77925443796e1e59c1b7b7a60',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::EigenFunctor()']]],
+ ['end_1',['end',['../classgridfire_1_1reaction_1_1_logical_reaction.html#af8d23557326e6c8499fa4919ac0bd972',1,'gridfire::reaction::LogicalReaction::end()'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a054994f733b44293b4d79f3a9b207560',1,'gridfire::reaction::LogicalReaction::end() const'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad19adbee44a71559a53785e3b1fc7e92',1,'gridfire::reaction::TemplatedReactionSet::end()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac128da7417955ef8c5cb2bde5a1293c9',1,'gridfire::reaction::TemplatedReactionSet::end() const']]],
+ ['energy_2',['energy',['../structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b',1,'gridfire::NetIn::energy'],['../structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6',1,'gridfire::NetOut::energy'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf',1,'gridfire::exceptions::StaleEngineTrigger::energy()']]],
+ ['engine_3',['Engine',['../classgridfire_1_1_engine.html',1,'gridfire']]],
+ ['engine_20composition_4',['Engine Composition',['../engine_8h.html#EngineComposition',1,'']]],
+ ['engine_20design_5',['Engine Design',['../engine_8h.html#EngineDesign',1,'']]],
+ ['engine_20views_6',['Engine Views',['../index.html#autotoc_md12',1,'']]],
+ ['engine_2eh_7',['engine.h',['../engine_8h.html',1,'']]],
+ ['engine_5fabstract_2eh_8',['engine_abstract.h',['../engine__abstract_8h.html',1,'']]],
+ ['engine_5fadaptive_2ecpp_9',['engine_adaptive.cpp',['../engine__adaptive_8cpp.html',1,'']]],
+ ['engine_5fadaptive_2eh_10',['engine_adaptive.h',['../engine__adaptive_8h.html',1,'']]],
+ ['engine_5fapprox8_2ecpp_11',['engine_approx8.cpp',['../engine__approx8_8cpp.html',1,'']]],
+ ['engine_5fapprox8_2eh_12',['engine_approx8.h',['../engine__approx8_8h.html',1,'']]],
+ ['engine_5fdefined_2ecpp_13',['engine_defined.cpp',['../engine__defined_8cpp.html',1,'']]],
+ ['engine_5fdefined_2eh_14',['engine_defined.h',['../engine__defined_8h.html',1,'']]],
+ ['engine_5fgraph_2ecpp_15',['engine_graph.cpp',['../engine__graph_8cpp.html',1,'']]],
+ ['engine_5fgraph_2eh_16',['engine_graph.h',['../engine__graph_8h.html',1,'']]],
+ ['engine_5fmultiscale_2ecpp_17',['engine_multiscale.cpp',['../engine__multiscale_8cpp.html',1,'']]],
+ ['engine_5fmultiscale_2eh_18',['engine_multiscale.h',['../engine__multiscale_8h.html',1,'']]],
+ ['engine_5fpriming_2ecpp_19',['engine_priming.cpp',['../engine__priming_8cpp.html',1,'']]],
+ ['engine_5fpriming_2eh_20',['engine_priming.h',['../engine__priming_8h.html',1,'']]],
+ ['engine_5fprocedures_2eh_21',['engine_procedures.h',['../engine__procedures_8h.html',1,'']]],
+ ['engine_5ftypes_2eh_22',['engine_types.h',['../engine__types_8h.html',1,'']]],
+ ['engine_5fview_5fabstract_2eh_23',['engine_view_abstract.h',['../engine__view__abstract_8h.html',1,'']]],
+ ['engine_5fviews_2eh_24',['engine_views.h',['../engine__views_8h.html',1,'']]],
+ ['engineerror_25',['EngineError',['../classgridfire_1_1exceptions_1_1_engine_error.html',1,'gridfire::exceptions::EngineError'],['../structgridfire_1_1expectations_1_1_engine_error.html',1,'gridfire::expectations::EngineError'],['../structgridfire_1_1expectations_1_1_engine_error.html#afb827165fd15ba94c50c72b28735fdaa',1,'gridfire::expectations::EngineError::EngineError()']]],
+ ['engineerrortypes_26',['EngineErrorTypes',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87c',1,'gridfire::expectations']]],
+ ['engineindexerror_27',['EngineIndexError',['../structgridfire_1_1expectations_1_1_engine_index_error.html',1,'gridfire::expectations::EngineIndexError'],['../structgridfire_1_1expectations_1_1_engine_index_error.html#ab44bba2a197d43319e65cd200cd347b0',1,'gridfire::expectations::EngineIndexError::EngineIndexError()']]],
+ ['engines_28',['Available Engines',['../engine_8h.html#AvailableEngines',1,'']]],
+ ['engines_20and_20views_29',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md29',1,'']]],
+ ['enginetype_30',['EngineType',['../conceptgridfire_1_1_engine_type.html',1,'gridfire']]],
+ ['engineview_31',['EngineView',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
+ ['engineview_3c_20dynamicengine_20_3e_32',['EngineView< DynamicEngine >',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
+ ['engineview_3c_20gridfire_3a_3adynamicengine_20_3e_33',['EngineView< gridfire::DynamicEngine >',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
+ ['engineview_3c_20gridfire_3a_3aengine_20_3e_34',['EngineView< gridfire::Engine >',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
+ ['equilibratenetwork_35',['equilibrateNetwork',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d',1,'gridfire::MultiscalePartitioningEngineView::equilibrateNetwork(const std::vector< double > &Y, double T9, double rho)'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc',1,'gridfire::MultiscalePartitioningEngineView::equilibrateNetwork(const NetIn &netIn)']]],
+ ['error_5fengine_2eh_36',['error_engine.h',['../error__engine_8h.html',1,'']]],
+ ['evaluate_37',['evaluate',['../classgridfire_1_1approx8_1_1_approx8_network.html#a888734a3cdde4259e921e2efece411ee',1,'gridfire::approx8::Approx8Network::evaluate()'],['../classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c',1,'gridfire::Network::evaluate()'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b',1,'gridfire::partition::CompositePartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817',1,'gridfire::partition::PartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5',1,'gridfire::partition::GroundStatePartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681',1,'gridfire::partition::RauscherThielemannPartitionFunction::evaluate()'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f',1,'gridfire::solver::NetworkSolverStrategy::evaluate()'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a',1,'gridfire::solver::DirectNetworkSolver::evaluate()'],['../class_py_partition_function.html#a83aca0bc261734b7d3df8269f730c69b',1,'PyPartitionFunction::evaluate()'],['../class_py_dynamic_network_solver_strategy.html#a2095abb83ed6229ebb27b4883cec51c4',1,'PyDynamicNetworkSolverStrategy::evaluate()']]],
+ ['evaluatederivative_38',['evaluateDerivative',['../classgridfire_1_1partition_1_1_composite_partition_function.html#ac8900afaa5edd24fcb8eaf19e7379183',1,'gridfire::partition::CompositePartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_partition_function.html#a14009bdaca47f3eddf2c6c023845db5a',1,'gridfire::partition::PartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0eff10c7b134d9d4081ad72bbc785c5b',1,'gridfire::partition::GroundStatePartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aaa1e11579b44a88c5f18943cc303c4b4',1,'gridfire::partition::RauscherThielemannPartitionFunction::evaluateDerivative()'],['../class_py_partition_function.html#a260df9689bf698970ebf5104977a3dcf',1,'PyPartitionFunction::evaluateDerivative()']]],
+ ['example_39',['Example',['../md_docs_2static_2usage.html#autotoc_md31',1,'3. Step-by-Step Example'],['../engine_8h.html#AdaptiveEngineViewExample',1,'AdaptiveEngineView Example'],['../index.html#autotoc_md21',1,'Common Workflow Example'],['../engine_8h.html#DefinedEngineViewExample',1,'DefinedEngineView Example'],['../engine_8h.html#GraphEngineExample',1,'GraphEngine Example'],['../engine_8h.html#MultiscalePartitioningEngineViewExample',1,'MultiscalePartitioningEngineView Example'],['../engine_8h.html#NetworkPrimingEngineViewExample',1,'NetworkPrimingEngineView Example'],['../index.html#autotoc_md20',1,'Python Example']]],
+ ['example_3a_20adaptive_20network_20view_40',['C++ Example: Adaptive Network View',['../index.html#autotoc_md19',1,'']]],
+ ['example_3a_20graphengine_20initialization_41',['C++ Example: GraphEngine Initialization',['../index.html#autotoc_md18',1,'']]],
+ ['examples_42',['Examples',['../engine_8h.html#UsageExamples',1,'Usage Examples'],['../index.html#autotoc_md17',1,'Usage Examples']]],
+ ['exceptions_2eh_43',['exceptions.h',['../exceptions_8h.html',1,'']]],
+ ['excess_5fenergy_44',['excess_energy',['../classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5',1,'gridfire::reaction::Reaction::excess_energy()'],['../classgridfire_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5',1,'gridfire::Reaction::excess_energy()']]],
+ ['expectations_2eh_45',['expectations.h',['../expectations_8h.html',1,'']]],
+ ['expected_5fengine_2eh_46',['expected_engine.h',['../expected__engine_8h.html',1,'']]],
+ ['exporttocsv_47',['exportToCSV',['../classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95',1,'gridfire::GraphEngine']]],
+ ['exporttodot_48',['exportToDot',['../classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929',1,'gridfire::GraphEngine::exportToDot()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18',1,'gridfire::MultiscalePartitioningEngineView::exportToDot()']]]
];
diff --git a/docs/html/search/all_a.js b/docs/html/search/all_a.js
index 070c2d50..3b06f40c 100644
--- a/docs/html/search/all_a.js
+++ b/docs/html/search/all_a.js
@@ -1,4 +1,28 @@
var searchData=
[
- ['kb_0',['kB',['../structgridfire_1_1_graph_engine_1_1constants.html#a29c8ae2b5c1d5fecd25c4fde2b623f7f',1,'gridfire::GraphEngine::constants']]]
+ ['failed_5fto_5ffinalize_5fcomposition_0',['FAILED_TO_FINALIZE_COMPOSITION',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f',1,'gridfire']]],
+ ['failed_5fto_5ffind_5fcreation_5fchannel_1',['FAILED_TO_FIND_CREATION_CHANNEL',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a',1,'gridfire']]],
+ ['failed_5fto_5ffind_5fpriming_5freactions_2',['FAILED_TO_FIND_PRIMING_REACTIONS',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931',1,'gridfire']]],
+ ['failedtopartitionengineerror_3',['FailedToPartitionEngineError',['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html',1,'gridfire::exceptions::FailedToPartitionEngineError'],['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a9b9e8752798876d34a444f61fc2f509a',1,'gridfire::exceptions::FailedToPartitionEngineError::FailedToPartitionEngineError()']]],
+ ['failure_4',['FAILURE',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca36fc6065a3e970bc3e6b2e59da52bf2a',1,'gridfire::expectations']]],
+ ['fifthorder_5',['FifthOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a5105376c2b90747e00bed5bf2953dd56',1,'gridfire']]],
+ ['filedefinedengineview_6',['FileDefinedEngineView',['../classgridfire_1_1_file_defined_engine_view.html',1,'gridfire::FileDefinedEngineView'],['../classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd',1,'gridfire::FileDefinedEngineView::FileDefinedEngineView()']]],
+ ['finalizeactiveset_7',['finalizeActiveSet',['../classgridfire_1_1_adaptive_engine_view.html#aa79fb382c98461b02a2c30668491e6c5',1,'gridfire::AdaptiveEngineView']]],
+ ['find_8',['find',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a12058e121981294f447e69a467fd84cd',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+ ['finddominantcreationchannel_9',['findDominantCreationChannel',['../namespacegridfire.html#aefc63ddbfe97dcb4178c94dfd1c4b256',1,'gridfire']]],
+ ['findreachablespecies_10',['findReachableSpecies',['../classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b',1,'gridfire::AdaptiveEngineView']]],
+ ['flow_11',['Code Architecture and Logical Flow',['../index.html#autotoc_md9',1,'']]],
+ ['flowrate_12',['flowRate',['../structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a6c2e9087f6c8af5d89a5f0de7bd4a5b4',1,'gridfire::AdaptiveEngineView::ReactionFlow']]],
+ ['for_5fsparse_5fjac_13',['for_sparse_jac',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4',1,'gridfire::GraphEngine::AtomicReverseRate']]],
+ ['formatnucleartimescalelogstring_14',['formatNuclearTimescaleLogString',['../namespacegridfire_1_1utils.html#af56693a70d9e2b40c8ae2c3bcd4b26c8',1,'gridfire::utils']]],
+ ['formatstringlookup_15',['FormatStringLookup',['../namespacegridfire.html#a4e9cabad30b57d636c2f0d73d8cc6bb4',1,'gridfire']]],
+ ['forward_16',['forward',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0',1,'gridfire::GraphEngine::AtomicReverseRate']]],
+ ['fourthorder_17',['FourthOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a100e3bf0197221c19b222badf42aa964',1,'gridfire']]],
+ ['from_20source_18',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md27',1,'']]],
+ ['front_19',['FRONT',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+ ['full_20',['Full',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75',1,'gridfire']]],
+ ['full_5fsuccess_21',['FULL_SUCCESS',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a',1,'gridfire']]],
+ ['functions_22',['Available Partition Functions',['../index.html#autotoc_md11',1,'']]],
+ ['funding_23',['Funding',['../index.html#autotoc_md1',1,'']]],
+ ['future_20solver_20implementations_24',['Future Solver Implementations',['../index.html#autotoc_md16',1,'']]]
];
diff --git a/docs/html/search/all_b.js b/docs/html/search/all_b.js
index e133edda..d2d3b88a 100644
--- a/docs/html/search/all_b.js
+++ b/docs/html/search/all_b.js
@@ -1,12 +1,55 @@
var searchData=
[
- ['label_0',['label',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a2165deb1c0a54a5086b496cf34604fa5',1,'gridfire::reaclib::ReactionRecord']]],
- ['library_1',['Library',['../index.html#autotoc_md5',1,'Building the C++ Library'],['../index.html#autotoc_md6',1,'Installing the Library']]],
- ['logging_2ecpp_2',['logging.cpp',['../logging_8cpp.html',1,'']]],
- ['logging_2eh_3',['logging.h',['../logging_8h.html',1,'']]],
- ['logical_20flow_4',['Code Architecture and Logical Flow',['../index.html#autotoc_md9',1,'']]],
- ['logicalreaction_5',['LogicalReaction',['../classgridfire_1_1reaction_1_1_logical_reaction.html',1,'gridfire::reaction::LogicalReaction'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a6965906ea33ebd0d615811219d9e9537',1,'gridfire::reaction::LogicalReaction::LogicalReaction()']]],
- ['logicalreactionset_6',['LogicalReactionSet',['../namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31',1,'gridfire::reaction::LogicalReactionSet'],['../namespacegridfire.html#aa86f08712565f278adacc7cd2361eb31',1,'gridfire::LogicalReactionSet']]],
- ['logmanager_7',['LogManager',['../classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103',1,'gridfire::AdaptiveEngineView::LogManager'],['../classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08',1,'gridfire::FileDefinedEngineView::LogManager'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de',1,'gridfire::io::SimpleReactionListFileParser::LogManager'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055',1,'gridfire::io::MESANetworkFileParser::LogManager']]],
- ['lowerindex_8',['lowerIndex',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html#a2da59e4f6e2ba3eff581bacabbf387de',1,'gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope']]]
+ ['g_5fnorm_5fhigh_0',['G_norm_high',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a3cb7ee6f3031997aab99c5502b61d90e',1,'gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints']]],
+ ['g_5fnorm_5flow_1',['G_norm_low',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html#a7d291ba80f958fe34ae72b21c6fab380',1,'gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints']]],
+ ['generatejacobianmatrix_2',['GenerateJacobianMatrix',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9e720102de6020a01552bc0e8935c566',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+ ['generatejacobianmatrix_3',['generateJacobianMatrix',['../classgridfire_1_1_dynamic_engine.html#a29bdd4231c29c3a4e524ad6ca66a127d',1,'gridfire::DynamicEngine::generateJacobianMatrix(const std::vector< double > &Y_dynamic, double T9, double rho) const =0'],['../classgridfire_1_1_dynamic_engine.html#a818d942efa843959393e4eed3263b7e7',1,'gridfire::DynamicEngine::generateJacobianMatrix(const std::vector< double > &Y_dynamic, double T9, double rho, const SparsityPattern &sparsityPattern) const'],['../classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119',1,'gridfire::GraphEngine::generateJacobianMatrix(const std::vector< double > &Y_dynamic, const double T9, const double rho) const override'],['../classgridfire_1_1_graph_engine.html#a9687eef88c97eeb7f8680acb230f8ac1',1,'gridfire::GraphEngine::generateJacobianMatrix(const std::vector< double > &Y_dynamic, double T9, double rho, const SparsityPattern &sparsityPattern) const override'],['../classgridfire_1_1_adaptive_engine_view.html#a03fc187d3d306b9058103b9522cbbaeb',1,'gridfire::AdaptiveEngineView::generateJacobianMatrix()'],['../classgridfire_1_1_defined_engine_view.html#ad25c722eaee1f28f8ed7b4d33a1f69ae',1,'gridfire::DefinedEngineView::generateJacobianMatrix()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#acdf5ad8765290ea2b78170235aea391d',1,'gridfire::MultiscalePartitioningEngineView::generateJacobianMatrix()'],['../class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d',1,'PyDynamicEngine::generateJacobianMatrix(const std::vector< double > &Y_dynamic, double T9, double rho) const override'],['../class_py_dynamic_engine.html#aa0f1fd3f0c0185395193d1b6897d64c5',1,'PyDynamicEngine::generateJacobianMatrix(const std::vector< double > &Y_dynamic, double T9, double rho, const gridfire::SparsityPattern &sparsityPattern) const override']]],
+ ['generatestoichiometrymatrix_4',['generateStoichiometryMatrix',['../classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f',1,'gridfire::DynamicEngine::generateStoichiometryMatrix()'],['../classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38',1,'gridfire::GraphEngine::generateStoichiometryMatrix()'],['../classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111',1,'gridfire::AdaptiveEngineView::generateStoichiometryMatrix()'],['../classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6',1,'gridfire::DefinedEngineView::generateStoichiometryMatrix()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a',1,'gridfire::MultiscalePartitioningEngineView::generateStoichiometryMatrix()'],['../class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9',1,'PyDynamicEngine::generateStoichiometryMatrix()']]],
+ ['get_5fall_5freactions_5',['get_all_reactions',['../namespacegridfire_1_1reaclib.html#a91c7971c9d0a2971b9a6fa4d841c761d',1,'gridfire::reaclib']]],
+ ['get_5finterpolation_5fpoints_6',['get_interpolation_points',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a3baed110ab1b12e22071dc2d92c55db9',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+ ['get_5ft9_5farray_7',['get_T9_array',['../namespacegridfire_1_1approx8.html#a20f9c48e60a5abf0b6868d1d05080222',1,'gridfire::approx8']]],
+ ['getbaseengine_8',['getBaseEngine',['../classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c',1,'gridfire::AdaptiveEngineView::getBaseEngine()'],['../classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484',1,'gridfire::DefinedEngineView::getBaseEngine()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1',1,'gridfire::MultiscalePartitioningEngineView::getBaseEngine()'],['../classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6',1,'gridfire::EngineView::getBaseEngine()'],['../class_py_engine_view.html#a3cd83dc57b521c65a14edf70357a8845',1,'PyEngineView::getBaseEngine()'],['../class_py_dynamic_engine_view.html#a51680b135cfc3eea40daf9ef5aa903e0',1,'PyDynamicEngineView::getBaseEngine()']]],
+ ['getdepth_9',['getDepth',['../classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9',1,'gridfire::DynamicEngine::getDepth()'],['../classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4',1,'gridfire::GraphEngine::getDepth()'],['../class_py_dynamic_engine.html#adba68716d832b6100e08d32fbc36f13c',1,'PyDynamicEngine::getDepth()']]],
+ ['getdynamicspecies_10',['getDynamicSpecies',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['getfastspecies_11',['getFastSpecies',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['getformat_12',['getFormat',['../classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118',1,'gridfire::Network']]],
+ ['getjacobianmatrixentry_13',['getJacobianMatrixEntry',['../classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07',1,'gridfire::DynamicEngine::getJacobianMatrixEntry()'],['../classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c',1,'gridfire::GraphEngine::getJacobianMatrixEntry()'],['../classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58',1,'gridfire::AdaptiveEngineView::getJacobianMatrixEntry()'],['../classgridfire_1_1_defined_engine_view.html#a273b175049f5ce7b9208e931ad139e1b',1,'gridfire::DefinedEngineView::getJacobianMatrixEntry()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ac961484383e86d9712a424728e068633',1,'gridfire::MultiscalePartitioningEngineView::getJacobianMatrixEntry()'],['../class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159',1,'PyDynamicEngine::getJacobianMatrixEntry()']]],
+ ['getmolarabundance_14',['getMolarAbundance',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea',1,'gridfire::exceptions::StaleEngineTrigger']]],
+ ['getnetreactionstoichiometry_15',['getNetReactionStoichiometry',['../classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9',1,'gridfire::GraphEngine']]],
+ ['getnetworkfile_16',['getNetworkFile',['../classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718',1,'gridfire::FileDefinedEngineView']]],
+ ['getnetworkreactions_17',['getNetworkReactions',['../classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037',1,'gridfire::DynamicEngine::getNetworkReactions()'],['../classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da',1,'gridfire::GraphEngine::getNetworkReactions()'],['../classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c',1,'gridfire::AdaptiveEngineView::getNetworkReactions()'],['../classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d',1,'gridfire::DefinedEngineView::getNetworkReactions()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ad751f2c1306895ee74a61f2071ca96eb',1,'gridfire::MultiscalePartitioningEngineView::getNetworkReactions()'],['../class_py_dynamic_engine.html#a5988cfba247631ba6c00795cafda9a38',1,'PyDynamicEngine::getNetworkReactions()']]],
+ ['getnetworkspecies_18',['getNetworkSpecies',['../classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3',1,'gridfire::Engine::getNetworkSpecies()'],['../classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767',1,'gridfire::GraphEngine::getNetworkSpecies()'],['../classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1',1,'gridfire::AdaptiveEngineView::getNetworkSpecies()'],['../classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211',1,'gridfire::DefinedEngineView::getNetworkSpecies()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80',1,'gridfire::MultiscalePartitioningEngineView::getNetworkSpecies()'],['../class_py_engine.html#a2d240423899e039c2ca688e96f8af1f2',1,'PyEngine::getNetworkSpecies()'],['../class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d',1,'PyDynamicEngine::getNetworkSpecies()']]],
+ ['getparser_19',['getParser',['../classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f',1,'gridfire::FileDefinedEngineView']]],
+ ['getpartitionfunction_20',['getPartitionFunction',['../classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44',1,'gridfire::GraphEngine']]],
+ ['getreactionsetspecies_21',['getReactionSetSpecies',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a1596de3439735a45ac344fa85ace6c82',1,'gridfire::reaction::TemplatedReactionSet']]],
+ ['getscreeningmodel_22',['getScreeningModel',['../classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0',1,'gridfire::DynamicEngine::getScreeningModel()'],['../classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a',1,'gridfire::GraphEngine::getScreeningModel()'],['../classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f',1,'gridfire::AdaptiveEngineView::getScreeningModel()'],['../classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c',1,'gridfire::DefinedEngineView::getScreeningModel()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82',1,'gridfire::MultiscalePartitioningEngineView::getScreeningModel()'],['../class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5',1,'PyDynamicEngine::getScreeningModel()']]],
+ ['getspeciesdestructiontimescales_23',['GetSpeciesDestructionTimescales',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a9ee18f2e987928cdb1afa7645a082061',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+ ['getspeciesdestructiontimescales_24',['getSpeciesDestructionTimescales',['../classgridfire_1_1_dynamic_engine.html#a6ca0f315f75252ca505507a61556dda6',1,'gridfire::DynamicEngine::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_graph_engine.html#aef8f6bde24d27345067b71084330c7da',1,'gridfire::GraphEngine::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_adaptive_engine_view.html#a522e78bce9ff062939572248d57f8cea',1,'gridfire::AdaptiveEngineView::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_defined_engine_view.html#a3d58e36ed8a6a0d82bb65e91090f7491',1,'gridfire::DefinedEngineView::getSpeciesDestructionTimescales()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aa38c367ef3c74d012ccd10521cd5a727',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesDestructionTimescales()'],['../class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3',1,'PyDynamicEngine::getSpeciesDestructionTimescales()']]],
+ ['getspeciesindex_25',['getSpeciesIndex',['../classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9',1,'gridfire::DynamicEngine::getSpeciesIndex()'],['../classgridfire_1_1_graph_engine.html#a914f6abc61805cddaebcb8f3cf470dda',1,'gridfire::GraphEngine::getSpeciesIndex()'],['../classgridfire_1_1_adaptive_engine_view.html#a9055feb245524a5a9549ace935f059ff',1,'gridfire::AdaptiveEngineView::getSpeciesIndex()'],['../classgridfire_1_1_defined_engine_view.html#abfee22688617ffe91c69be93049c89b3',1,'gridfire::DefinedEngineView::getSpeciesIndex()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a91d32b7197fcb27ee697d5bfde960f3f',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesIndex()'],['../class_py_dynamic_engine.html#a2ee1d745c1c21b9fcb652c96c42f1091',1,'PyDynamicEngine::getSpeciesIndex()']]],
+ ['getspeciestimescales_26',['GetSpeciesTimescales',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+ ['getspeciestimescales_27',['getSpeciesTimescales',['../classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813',1,'gridfire::DynamicEngine::getSpeciesTimescales()'],['../classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581',1,'gridfire::GraphEngine::getSpeciesTimescales()'],['../classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9',1,'gridfire::AdaptiveEngineView::getSpeciesTimescales()'],['../classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72',1,'gridfire::DefinedEngineView::getSpeciesTimescales()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a560612347bbd5b7b380e990624d01105',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesTimescales()'],['../class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22',1,'PyDynamicEngine::getSpeciesTimescales()']]],
+ ['getstate_28',['getState',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5',1,'gridfire::exceptions::StaleEngineTrigger']]],
+ ['getstoichiometrymatrixentry_29',['getStoichiometryMatrixEntry',['../classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f',1,'gridfire::DynamicEngine::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152',1,'gridfire::GraphEngine::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9',1,'gridfire::AdaptiveEngineView::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2',1,'gridfire::DefinedEngineView::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a510b920dea726aef859ac1f6d051807e',1,'gridfire::MultiscalePartitioningEngineView::getStoichiometryMatrixEntry()'],['../class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83',1,'PyDynamicEngine::getStoichiometryMatrixEntry()']]],
+ ['graphengine_30',['GraphEngine',['../classgridfire_1_1_graph_engine.html',1,'gridfire::GraphEngine'],['../classgridfire_1_1_graph_engine.html#afad967546b611d9c005268760feb75d5',1,'gridfire::GraphEngine::GraphEngine(const fourdst::composition::Composition &composition, const BuildDepthType=NetworkBuildDepth::Full)'],['../classgridfire_1_1_graph_engine.html#a39d9838ed40bea71ee6c552bb5969026',1,'gridfire::GraphEngine::GraphEngine(const fourdst::composition::Composition &composition, const partition::PartitionFunction &partitionFunction, const BuildDepthType buildDepth=NetworkBuildDepth::Full)'],['../classgridfire_1_1_graph_engine.html#a1e7e851dfa21d41c2dc533ba56fc4c7b',1,'gridfire::GraphEngine::GraphEngine(const reaction::LogicalReactionSet &reactions)']]],
+ ['graphengine_20configuration_20options_31',['GraphEngine Configuration Options',['../index.html#autotoc_md10',1,'']]],
+ ['graphengine_20example_32',['GraphEngine Example',['../engine_8h.html#GraphEngineExample',1,'']]],
+ ['graphengine_20initialization_33',['C++ Example: GraphEngine Initialization',['../index.html#autotoc_md18',1,'']]],
+ ['gridfire_34',['GridFire',['../index.html',1,'']]],
+ ['gridfire_35',['gridfire',['../namespacegridfire.html',1,'']]],
+ ['gridfire_20python_20usage_20guide_36',['GridFire Python Usage Guide',['../md_docs_2static_2usage.html',1,'']]],
+ ['gridfire_3a_3aapprox8_37',['approx8',['../namespacegridfire_1_1approx8.html',1,'gridfire']]],
+ ['gridfire_3a_3aexceptions_38',['exceptions',['../namespacegridfire_1_1exceptions.html',1,'gridfire']]],
+ ['gridfire_3a_3aexpectations_39',['expectations',['../namespacegridfire_1_1expectations.html',1,'gridfire']]],
+ ['gridfire_3a_3aio_40',['io',['../namespacegridfire_1_1io.html',1,'gridfire']]],
+ ['gridfire_3a_3apartition_41',['partition',['../namespacegridfire_1_1partition.html',1,'gridfire']]],
+ ['gridfire_3a_3apartition_3a_3arecord_42',['record',['../namespacegridfire_1_1partition_1_1record.html',1,'gridfire::partition']]],
+ ['gridfire_3a_3areaclib_43',['reaclib',['../namespacegridfire_1_1reaclib.html',1,'gridfire']]],
+ ['gridfire_3a_3areaction_44',['reaction',['../namespacegridfire_1_1reaction.html',1,'gridfire']]],
+ ['gridfire_3a_3ascreening_45',['screening',['../namespacegridfire_1_1screening.html',1,'gridfire']]],
+ ['gridfire_3a_3asolver_46',['solver',['../namespacegridfire_1_1solver.html',1,'gridfire']]],
+ ['gridfire_3a_3autils_47',['utils',['../namespacegridfire_1_1utils.html',1,'gridfire']]],
+ ['ground_5fstate_5fspin_48',['ground_state_spin',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aec714697f3f5102124561252233fc350',1,'gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData::ground_state_spin'],['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#acf5c38826050594aee98d746d0ba40b2',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord::ground_state_spin']]],
+ ['groundstate_49',['GroundState',['../namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335',1,'gridfire::partition']]],
+ ['groundstatepartitionfunction_50',['GroundStatePartitionFunction',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html',1,'gridfire::partition::GroundStatePartitionFunction'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a8afa2aee993eb3ed8d01c887d39b57eb',1,'gridfire::partition::GroundStatePartitionFunction::GroundStatePartitionFunction()']]],
+ ['guide_51',['GridFire Python Usage Guide',['../md_docs_2static_2usage.html',1,'']]]
];
diff --git a/docs/html/search/all_c.js b/docs/html/search/all_c.js
index 7e241f07..9f40d7b7 100644
--- a/docs/html/search/all_c.js
+++ b/docs/html/search/all_c.js
@@ -1,118 +1,12 @@
var searchData=
[
- ['m_5factivereactionindices_0',['m_activeReactionIndices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a445d7447f2cf18f755fc8b8b288e68cb',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['m_5factivereactions_1',['m_activeReactions',['../classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800',1,'gridfire::AdaptiveEngineView::m_activeReactions'],['../classgridfire_1_1_defined_engine_view.html#a373d4a83f30527a1bfaf1d74ad14c965',1,'gridfire::DefinedEngineView::m_activeReactions']]],
- ['m_5factivespecies_2',['m_activeSpecies',['../classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940',1,'gridfire::AdaptiveEngineView::m_activeSpecies'],['../classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae',1,'gridfire::DefinedEngineView::m_activeSpecies']]],
- ['m_5factivespeciesindices_3',['m_activeSpeciesIndices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['m_5falgebraic_5fspecies_4',['m_algebraic_species',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['m_5falgebraic_5fspecies_5findices_5',['m_algebraic_species_indices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a53862719dd73f98bc69eecde090cf655',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['m_5fatomicreverserates_6',['m_atomicReverseRates',['../classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6',1,'gridfire::GraphEngine']]],
- ['m_5fbaseengine_7',['m_baseEngine',['../classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8',1,'gridfire::AdaptiveEngineView::m_baseEngine'],['../classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195',1,'gridfire::DefinedEngineView::m_baseEngine'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93',1,'gridfire::MultiscalePartitioningEngineView::m_baseEngine']]],
- ['m_5fcacheconfig_8',['m_cacheConfig',['../structgridfire_1_1_q_s_e_cache_key.html#a711acccecadd93495fd08c81838be2d8',1,'gridfire::QSECacheKey']]],
- ['m_5fcached_5fresult_9',['m_cached_result',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
- ['m_5fcached_5ftime_10',['m_cached_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a17b83f2478395c934c4ec2c964e9d35e',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
- ['m_5fcachestats_11',['m_cacheStats',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['m_5fchapter_12',['m_chapter',['../classgridfire_1_1reaction_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b',1,'gridfire::reaction::Reaction::m_chapter'],['../classgridfire_1_1_reaction.html#a16f9cbb6269817099d3dc07d4e63da7b',1,'gridfire::Reaction::m_chapter']]],
- ['m_5fconfig_13',['m_config',['../classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18',1,'gridfire::GraphEngine::m_config'],['../classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30',1,'gridfire::AdaptiveEngineView::m_config'],['../classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362',1,'gridfire::FileDefinedEngineView::m_config'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874',1,'gridfire::io::SimpleReactionListFileParser::m_config'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d',1,'gridfire::io::MESANetworkFileParser::m_config'],['../classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09',1,'gridfire::Network::m_config'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a2cc12e737a753a42b72a45be3fbfa8ab',1,'gridfire::solver::DirectNetworkSolver::m_config']]],
- ['m_5fconstants_14',['m_constants',['../classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e',1,'gridfire::GraphEngine::m_constants'],['../classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410',1,'gridfire::Network::m_constants']]],
- ['m_5fdepth_15',['m_depth',['../classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01',1,'gridfire::GraphEngine']]],
- ['m_5fdt0_16',['m_dt0',['../classgridfire_1_1approx8_1_1_approx8_network.html#a6ed8022834e9541b3e547dd867648b0f',1,'gridfire::approx8::Approx8Network']]],
- ['m_5fdynamic_5fspecies_17',['m_dynamic_species',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['m_5fdynamic_5fspecies_5findices_18',['m_dynamic_species_indices',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a38b4f0373c3bd81503889650c0bb69bb',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['m_5fengine_19',['m_engine',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d',1,'gridfire::GraphEngine::AtomicReverseRate::m_engine'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8',1,'gridfire::solver::NetworkSolverStrategy::m_engine'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a035962dfdfc13d255def98befefcccd9',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_engine'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_engine']]],
- ['m_5feps_5fnuc_20',['m_eps_nuc',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a24207163a7ea2dde675b458f9df37a99',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
- ['m_5ffilename_21',['m_fileName',['../classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b',1,'gridfire::FileDefinedEngineView']]],
- ['m_5ffilename_22',['m_filename',['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099',1,'gridfire::io::MESANetworkFileParser']]],
- ['m_5fformat_23',['m_format',['../classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18',1,'gridfire::Network']]],
- ['m_5ffull_5fjacobian_5fsparsity_5fpattern_24',['m_full_jacobian_sparsity_pattern',['../classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06',1,'gridfire::GraphEngine']]],
- ['m_5fground_5fstate_5fspin_25',['m_ground_state_spin',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af7f710edff96b1623c517ddab137c245',1,'gridfire::partition::GroundStatePartitionFunction']]],
- ['m_5fhash_26',['m_hash',['../structgridfire_1_1_q_s_e_cache_key.html#ab860b40d4ccb3c16a962d96bc767ff05',1,'gridfire::QSECacheKey']]],
- ['m_5fhit_27',['m_hit',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a0c3bd8d5918e344657227a09cd7e39a5',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
- ['m_5fid_28',['m_id',['../classgridfire_1_1reaction_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b',1,'gridfire::reaction::Reaction::m_id'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5fda3af5ea9ae0ecfb60a61a9e07f5b4',1,'gridfire::reaction::TemplatedReactionSet::m_id'],['../classgridfire_1_1_reaction.html#a5c685e5a736b51799e5b9f6746c4126b',1,'gridfire::Reaction::m_id']]],
- ['m_5findex_29',['m_index',['../structgridfire_1_1expectations_1_1_engine_index_error.html#aa20994243d56f24d89230887b881e03e',1,'gridfire::expectations::EngineIndexError']]],
- ['m_5fisstale_30',['m_isStale',['../classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e',1,'gridfire::AdaptiveEngineView::m_isStale'],['../classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382',1,'gridfire::DefinedEngineView::m_isStale']]],
- ['m_5fjac_5fwork_31',['m_jac_work',['../classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891',1,'gridfire::GraphEngine']]],
- ['m_5fjacobianmatrix_32',['m_jacobianMatrix',['../classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910',1,'gridfire::GraphEngine']]],
- ['m_5flast_5fobserved_5ftime_33',['m_last_observed_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a49268e65b89444c3caf1e69323ce545b',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
- ['m_5flast_5fstep_5ftime_34',['m_last_step_time',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a69d773a1cfe4804876dbf23de1f212c9',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
- ['m_5flogger_35',['m_logger',['../classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53',1,'gridfire::GraphEngine::m_logger'],['../classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193',1,'gridfire::AdaptiveEngineView::m_logger'],['../classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3',1,'gridfire::DefinedEngineView::m_logger'],['../classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432',1,'gridfire::FileDefinedEngineView::m_logger'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a',1,'gridfire::MultiscalePartitioningEngineView::m_logger'],['../classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d',1,'gridfire::NetworkPrimingEngineView::m_logger'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66',1,'gridfire::io::SimpleReactionListFileParser::m_logger'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937',1,'gridfire::io::MESANetworkFileParser::m_logger'],['../classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5',1,'gridfire::Network::m_logger'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b',1,'gridfire::partition::CompositePartitionFunction::m_logger'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b',1,'gridfire::partition::GroundStatePartitionFunction::m_logger'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6',1,'gridfire::partition::RauscherThielemannPartitionFunction::m_logger'],['../classgridfire_1_1reaction_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4',1,'gridfire::reaction::Reaction::m_logger'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac6fcc5b08938b73ff6dac680e5bf28d9',1,'gridfire::reaction::TemplatedReactionSet::m_logger'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f',1,'gridfire::screening::WeakScreeningModel::m_logger'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a6cc605a83b5ac5ae048d1044be284ada',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_logger'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079',1,'gridfire::solver::DirectNetworkSolver::m_logger'],['../classgridfire_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4',1,'gridfire::Reaction::m_logger']]],
- ['m_5flogmanager_36',['m_logManager',['../classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16',1,'gridfire::Network']]],
- ['m_5fmessage_37',['m_message',['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb',1,'gridfire::exceptions::StaleEngineError::m_message'],['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a77c9a660a2748c2e3a1c7e94edad1cf0',1,'gridfire::exceptions::FailedToPartitionEngineError::m_message'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a581527fc03fdd84a8309c147259ec09d',1,'gridfire::exceptions::NetworkResizedError::m_message'],['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047',1,'gridfire::exceptions::UnableToSetNetworkReactionsError::m_message'],['../structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc',1,'gridfire::expectations::EngineError::m_message']]],
- ['m_5fmiss_38',['m_miss',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a73ca615753553f4a85160bd9f166da5b',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
- ['m_5fnetworkspecies_39',['m_networkSpecies',['../classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc',1,'gridfire::GraphEngine']]],
- ['m_5fnetworkspeciesmap_40',['m_networkSpeciesMap',['../classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827',1,'gridfire::GraphEngine']]],
- ['m_5fnum_5fsteps_41',['m_num_steps',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
- ['m_5foperatorhits_42',['m_operatorHits',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac18229250c4c160aada96e19325faa29',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
- ['m_5foperatormisses_43',['m_operatorMisses',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
- ['m_5fparser_44',['m_parser',['../classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500',1,'gridfire::FileDefinedEngineView']]],
- ['m_5fpartitiondata_45',['m_partitionData',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a50ce19df4c12e22bbcb61422248a4038',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
- ['m_5fpartitionfunction_46',['m_partitionFunction',['../classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e',1,'gridfire::GraphEngine']]],
- ['m_5fpartitionfunctions_47',['m_partitionFunctions',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8',1,'gridfire::partition::CompositePartitionFunction']]],
- ['m_5fpename_48',['m_peName',['../classgridfire_1_1reaction_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248',1,'gridfire::reaction::Reaction::m_peName'],['../classgridfire_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248',1,'gridfire::Reaction::m_peName']]],
- ['m_5fprecomputedreactions_49',['m_precomputedReactions',['../classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3',1,'gridfire::GraphEngine']]],
- ['m_5fprimingspecies_50',['m_primingSpecies',['../classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5',1,'gridfire::NetworkPrimingEngineView']]],
- ['m_5fproducts_51',['m_products',['../classgridfire_1_1reaction_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e',1,'gridfire::reaction::Reaction::m_products'],['../classgridfire_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e',1,'gridfire::Reaction::m_products']]],
- ['m_5fqse_5fabundance_5fcache_52',['m_qse_abundance_cache',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['m_5fqse_5fgroups_53',['m_qse_groups',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['m_5fqse_5fsolve_5findices_54',['m_qse_solve_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4eb11e99dc2a7e038d815bf7c6bd0be8',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
- ['m_5fqvalue_55',['m_qValue',['../classgridfire_1_1reaction_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b',1,'gridfire::reaction::Reaction::m_qValue'],['../classgridfire_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b',1,'gridfire::Reaction::m_qValue']]],
- ['m_5fratecoefficients_56',['m_rateCoefficients',['../classgridfire_1_1reaction_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72',1,'gridfire::reaction::Reaction::m_rateCoefficients'],['../classgridfire_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72',1,'gridfire::Reaction::m_rateCoefficients']]],
- ['m_5frates_57',['m_rates',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a81f75f0085f8a5a45169f0b7240c809d',1,'gridfire::reaction::LogicalReaction']]],
- ['m_5freactants_58',['m_reactants',['../classgridfire_1_1reaction_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11',1,'gridfire::reaction::Reaction::m_reactants'],['../classgridfire_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11',1,'gridfire::Reaction::m_reactants']]],
- ['m_5freaction_59',['m_reaction',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a98ed8b450f7868f55e8362a848a4710d',1,'gridfire::GraphEngine::AtomicReverseRate']]],
- ['m_5freactionidmap_60',['m_reactionIDMap',['../classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3',1,'gridfire::GraphEngine']]],
- ['m_5freactionindexmap_61',['m_reactionIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de',1,'gridfire::AdaptiveEngineView::m_reactionIndexMap'],['../classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd',1,'gridfire::DefinedEngineView::m_reactionIndexMap']]],
- ['m_5freactionnamemap_62',['m_reactionNameMap',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a3a4c2448865580001fd3c797b9f56979',1,'gridfire::reaction::TemplatedReactionSet']]],
- ['m_5freactions_63',['m_reactions',['../classgridfire_1_1_graph_engine.html#acb7c4f5108b0efeae48ad15598e808c3',1,'gridfire::GraphEngine::m_reactions'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5962968fe478c79250e9d88d80a87600',1,'gridfire::reaction::TemplatedReactionSet::m_reactions']]],
- ['m_5freverse_64',['m_reverse',['../classgridfire_1_1reaction_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9',1,'gridfire::reaction::Reaction::m_reverse'],['../classgridfire_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9',1,'gridfire::Reaction::m_reverse']]],
- ['m_5frho_65',['m_rho',['../structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63',1,'gridfire::QSECacheKey::m_rho'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::m_rho'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44',1,'gridfire::exceptions::StaleEngineTrigger::state::m_rho'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_rho'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_rho']]],
- ['m_5frhsadfun_66',['m_rhsADFun',['../classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876',1,'gridfire::GraphEngine']]],
- ['m_5fscreeningmodel_67',['m_screeningModel',['../classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210',1,'gridfire::GraphEngine']]],
- ['m_5fscreeningtype_68',['m_screeningType',['../classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80',1,'gridfire::GraphEngine']]],
- ['m_5fsourcelabel_69',['m_sourceLabel',['../classgridfire_1_1reaction_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6',1,'gridfire::reaction::Reaction::m_sourceLabel'],['../classgridfire_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6',1,'gridfire::Reaction::m_sourceLabel']]],
- ['m_5fsources_70',['m_sources',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a7fe91d24e20ebc76d612f6ad742f476f',1,'gridfire::reaction::LogicalReaction']]],
- ['m_5fspecies_5fcache_71',['m_species_cache',['../class_py_engine.html#a73caaa7606e2cdfd1aa82729a78ebb73',1,'PyEngine::m_species_cache'],['../class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03',1,'PyDynamicEngine::m_species_cache']]],
- ['m_5fspeciesindexmap_72',['m_speciesIndexMap',['../classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093',1,'gridfire::AdaptiveEngineView::m_speciesIndexMap'],['../classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e',1,'gridfire::DefinedEngineView::m_speciesIndexMap']]],
- ['m_5fspeciestoindexmap_73',['m_speciesToIndexMap',['../classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7',1,'gridfire::GraphEngine']]],
- ['m_5fstate_74',['m_state',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a7f9fa2e34da3772714723ef7d5083be5',1,'gridfire::exceptions::StaleEngineTrigger']]],
- ['m_5fstiff_75',['m_stiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#a697cb49bebc8d0659eb791500c451c67',1,'gridfire::approx8::Approx8Network::m_stiff'],['../classgridfire_1_1_network.html#aefe364ae5af783e19e7b93bfd475566e',1,'gridfire::Network::m_stiff']]],
- ['m_5fstoichiometrymatrix_76',['m_stoichiometryMatrix',['../classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24',1,'gridfire::GraphEngine']]],
- ['m_5ft_77',['m_t',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a352cd33629e63286808df617d36cb70b',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
- ['m_5ft9_78',['m_T9',['../structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7',1,'gridfire::QSECacheKey::m_T9'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::m_T9'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963',1,'gridfire::exceptions::StaleEngineTrigger::state::m_T9'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef',1,'gridfire::solver::DirectNetworkSolver::RHSManager::m_T9'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_T9']]],
- ['m_5ftmax_79',['m_tMax',['../classgridfire_1_1approx8_1_1_approx8_network.html#a6fadf388f07c160f1887a3cb72eaa869',1,'gridfire::approx8::Approx8Network']]],
- ['m_5ftotal_5fsteps_80',['m_total_steps',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#ac1cddf0f2955d4282afcf4a90a2de9c0',1,'gridfire::exceptions::StaleEngineTrigger::state']]],
- ['m_5fuseprecomputation_81',['m_usePrecomputation',['../classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de',1,'gridfire::GraphEngine']]],
- ['m_5fusereversereactions_82',['m_useReverseReactions',['../classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc',1,'gridfire::GraphEngine']]],
- ['m_5fview_83',['m_view',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
- ['m_5fy_84',['m_Y',['../structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a',1,'gridfire::QSECacheKey::m_Y'],['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf',1,'gridfire::exceptions::StaleEngineTrigger::state::m_Y']]],
- ['m_5fy_85',['m_y',['../classgridfire_1_1approx8_1_1_approx8_network.html#abf9f13ff532917ddac4a7d987698836d',1,'gridfire::approx8::Approx8Network']]],
- ['m_5fy_5ffull_5finitial_86',['m_Y_full_initial',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3bc901d2d8234d1f61e94d0fe0777f7d',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
- ['m_5fy_5fscale_87',['m_Y_scale',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
- ['mainpage_2emd_88',['mainpage.md',['../mainpage_8md.html',1,'']]],
- ['make_5fkey_89',['make_key',['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a99c80e2f4ba36e88e08e2abd650a08fb',1,'gridfire::partition::GroundStatePartitionFunction::make_key()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec',1,'gridfire::partition::RauscherThielemannPartitionFunction::make_key()']]],
- ['mapculledtofull_90',['mapCulledToFull',['../classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1',1,'gridfire::AdaptiveEngineView']]],
- ['mapculledtofullreactionindex_91',['mapCulledToFullReactionIndex',['../classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101',1,'gridfire::AdaptiveEngineView']]],
- ['mapculledtofullspeciesindex_92',['mapCulledToFullSpeciesIndex',['../classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8',1,'gridfire::AdaptiveEngineView']]],
- ['mapfulltoculled_93',['mapFullToCulled',['../classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44',1,'gridfire::AdaptiveEngineView']]],
- ['mapfulltoview_94',['mapFullToView',['../classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873',1,'gridfire::DefinedEngineView']]],
- ['mapnetintomolarabundancevector_95',['mapNetInToMolarAbundanceVector',['../classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a',1,'gridfire::DynamicEngine::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f',1,'gridfire::GraphEngine::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019',1,'gridfire::AdaptiveEngineView::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2',1,'gridfire::DefinedEngineView::mapNetInToMolarAbundanceVector()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0',1,'gridfire::MultiscalePartitioningEngineView::mapNetInToMolarAbundanceVector()'],['../class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac',1,'PyDynamicEngine::mapNetInToMolarAbundanceVector()']]],
- ['mapviewtofull_96',['mapViewToFull',['../classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843',1,'gridfire::DefinedEngineView']]],
- ['mapviewtofullreactionindex_97',['mapViewToFullReactionIndex',['../classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1',1,'gridfire::DefinedEngineView']]],
- ['mapviewtofullspeciesindex_98',['mapViewToFullSpeciesIndex',['../classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a',1,'gridfire::DefinedEngineView']]],
- ['massfractionchanges_99',['massFractionChanges',['../structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7',1,'gridfire::PrimingReport']]],
- ['matrix_5ftype_100',['matrix_type',['../namespacegridfire_1_1approx8.html#a275aecf94e3145c2ff3d1756deda54ce',1,'gridfire::approx8']]],
- ['max_5fiterations_5freached_101',['MAX_ITERATIONS_REACHED',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287',1,'gridfire']]],
- ['mean_5ftimescale_102',['mean_timescale',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
- ['mesanetworkfileparser_103',['MESANetworkFileParser',['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html',1,'gridfire::io::MESANetworkFileParser'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c',1,'gridfire::io::MESANetworkFileParser::MESANetworkFileParser()']]],
- ['method_104',['DirectNetworkSolver (Implicit Rosenbrock Method)',['../index.html#autotoc_md14',1,'']]],
- ['middle_105',['MIDDLE',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
- ['min_5fabundance_5fthreshold_106',['MIN_ABUNDANCE_THRESHOLD',['../namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06',1,'gridfire']]],
- ['min_5fdensity_5fthreshold_107',['MIN_DENSITY_THRESHOLD',['../namespacegridfire.html#ada3c137c014ecd8d06200fea2d1a9f50',1,'gridfire']]],
- ['min_5fjacobian_5fthreshold_108',['MIN_JACOBIAN_THRESHOLD',['../namespacegridfire.html#ae01b1738df1921db565bcbd68dd6cf64',1,'gridfire']]],
- ['mion_109',['mIon',['../structgridfire_1_1approx8_1_1_approx8_net.html#a928b7810cb2993d59d40aa73c2faef18',1,'gridfire::approx8::Approx8Net']]],
- ['miss_110',['miss',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac55fb580dd4b9763cefe4612555b03f3',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
- ['misses_111',['misses',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5df4f2c27e9eaa781c972a8c9b595787',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
- ['molarabundance_112',['MolarAbundance',['../structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65',1,'gridfire::NetIn']]],
- ['multiscalepartitioningengineview_113',['MultiscalePartitioningEngineView',['../classgridfire_1_1_multiscale_partitioning_engine_view.html',1,'gridfire::MultiscalePartitioningEngineView'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f',1,'gridfire::MultiscalePartitioningEngineView::MultiscalePartitioningEngineView()']]],
- ['multiscalepartitioningengineview_20example_114',['MultiscalePartitioningEngineView Example',['../engine_8h.html#MultiscalePartitioningEngineViewExample',1,'']]]
+ ['hash_0',['hash',['../structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d',1,'gridfire::QSECacheKey::hash()'],['../classgridfire_1_1reaction_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5',1,'gridfire::reaction::Reaction::hash()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a272800016c83f259f5c6a92dc797353c',1,'gridfire::reaction::TemplatedReactionSet::hash()'],['../classgridfire_1_1_reaction.html#af6c20e6d03a2d9f87632f71a90b88cb5',1,'gridfire::Reaction::hash()']]],
+ ['hash_3c_20gridfire_3a_3aqsecachekey_20_3e_1',['hash< gridfire::QSECacheKey >',['../structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html',1,'std']]],
+ ['hash_3c_20gridfire_3a_3areaction_3a_3alogicalreactionset_20_3e_2',['hash< gridfire::reaction::LogicalReactionSet >',['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html',1,'std']]],
+ ['hash_3c_20gridfire_3a_3areaction_3a_3areaction_20_3e_3',['hash< gridfire::reaction::Reaction >',['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html',1,'std']]],
+ ['hash_3c_20gridfire_3a_3areaction_3a_3areactionset_20_3e_4',['hash< gridfire::reaction::ReactionSet >',['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html',1,'std']]],
+ ['he3he3_5frate_5',['he3he3_rate',['../namespacegridfire_1_1approx8.html#a12cb71ba6ed03750af9e7659464197ea',1,'gridfire::approx8']]],
+ ['he3he4_5frate_6',['he3he4_rate',['../namespacegridfire_1_1approx8.html#a593cd66c1eadae4da233ae73b4aad4a3',1,'gridfire::approx8']]],
+ ['hit_7',['hit',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5eb642e161ffb5500ccc1e412849ee5e',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
+ ['hits_8',['hits',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#aaf8b925a169a732c14f4451a33451f51',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]]
];
diff --git a/docs/html/search/all_d.js b/docs/html/search/all_d.js
index 677f8221..f3c18e0d 100644
--- a/docs/html/search/all_d.js
+++ b/docs/html/search/all_d.js
@@ -1,35 +1,43 @@
var searchData=
[
- ['n14a_5frate_0',['n14a_rate',['../namespacegridfire_1_1approx8.html#a3a9861a77093effdfc061743eb13fcdb',1,'gridfire::approx8']]],
- ['n14p_5frate_1',['n14p_rate',['../namespacegridfire_1_1approx8.html#a34f18b2345a8fd8d96bbe1a9825c1f21',1,'gridfire::approx8']]],
- ['n15pa_5frate_2',['n15pa_rate',['../namespacegridfire_1_1approx8.html#a9a90b83dd4aa2dcc928bd14f4678dcef',1,'gridfire::approx8']]],
- ['n15pg_5ffrac_3',['n15pg_frac',['../namespacegridfire_1_1approx8.html#ac309c160c806208bf01bebeb29c23896',1,'gridfire::approx8']]],
- ['n15pg_5frate_4',['n15pg_rate',['../namespacegridfire_1_1approx8.html#acdbb3ee2ef22bfd9c836324285d0da98',1,'gridfire::approx8']]],
- ['na_5',['Na',['../structgridfire_1_1_graph_engine_1_1constants.html#a5ccc874d6704615e0ce54c14dc67699d',1,'gridfire::GraphEngine::constants']]],
- ['ne20a_5frate_6',['ne20a_rate',['../namespacegridfire_1_1approx8.html#ad7a6f894fa4bdeebb4cae0eba3b2c210',1,'gridfire::approx8']]],
- ['netin_7',['NetIn',['../structgridfire_1_1_net_in.html',1,'gridfire']]],
- ['netout_8',['NetOut',['../structgridfire_1_1_net_out.html',1,'gridfire']]],
- ['network_9',['Network',['../classgridfire_1_1_network.html',1,'gridfire::Network'],['../classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55',1,'gridfire::Network::Network()']]],
- ['network_20view_10',['C++ Example: Adaptive Network View',['../index.html#autotoc_md19',1,'']]],
- ['network_2ecpp_11',['network.cpp',['../network_8cpp.html',1,'']]],
- ['network_2eh_12',['network.h',['../network_8h.html',1,'']]],
- ['network_5ffile_2ecpp_13',['network_file.cpp',['../network__file_8cpp.html',1,'']]],
- ['network_5ffile_2eh_14',['network_file.h',['../network__file_8h.html',1,'']]],
- ['networkbuilddepth_15',['NetworkBuildDepth',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57',1,'gridfire']]],
- ['networkfileparser_16',['NetworkFileParser',['../classgridfire_1_1io_1_1_network_file_parser.html',1,'gridfire::io']]],
- ['networkformat_17',['NetworkFormat',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37',1,'gridfire']]],
- ['networkprimingengineview_18',['NetworkPrimingEngineView',['../classgridfire_1_1_network_priming_engine_view.html',1,'gridfire::NetworkPrimingEngineView'],['../classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177',1,'gridfire::NetworkPrimingEngineView::NetworkPrimingEngineView(const std::string &primingSymbol, DynamicEngine &baseEngine)'],['../classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6',1,'gridfire::NetworkPrimingEngineView::NetworkPrimingEngineView(const fourdst::atomic::Species &primingSpecies, DynamicEngine &baseEngine)']]],
- ['networkprimingengineview_20example_19',['NetworkPrimingEngineView Example',['../engine_8h.html#NetworkPrimingEngineViewExample',1,'']]],
- ['networkresizederror_20',['NetworkResizedError',['../classgridfire_1_1exceptions_1_1_network_resized_error.html',1,'gridfire::exceptions::NetworkResizedError'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a80c0adb088e8083309591d24051b056b',1,'gridfire::exceptions::NetworkResizedError::NetworkResizedError()']]],
- ['networksolverstrategy_21',['NetworkSolverStrategy',['../classgridfire_1_1solver_1_1_network_solver_strategy.html',1,'gridfire::solver::NetworkSolverStrategy< EngineT >'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505',1,'gridfire::solver::NetworkSolverStrategy::NetworkSolverStrategy()']]],
- ['networksolverstrategy_3c_20dynamicengine_20_3e_22',['NetworkSolverStrategy< DynamicEngine >',['../classgridfire_1_1solver_1_1_network_solver_strategy.html',1,'gridfire::solver']]],
- ['niso_23',['nIso',['../structgridfire_1_1approx8_1_1_approx8_net.html#a31928b4041479da6515a90569322fc02',1,'gridfire::approx8::Approx8Net']]],
- ['no_5fspecies_5fto_5fprime_24',['NO_SPECIES_TO_PRIME',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45',1,'gridfire']]],
- ['normalized_5fg_5fvalues_25',['normalized_g_values',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html#aea71e9198606e0ba393321178f988fcc',1,'gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData::normalized_g_values'],['../structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html#a64c1cef58c1bdeab1fcc7f9a30a71609',1,'gridfire::partition::record::RauscherThielemannPartitionDataRecord::normalized_g_values']]],
- ['nuclearenergygenerationrate_26',['nuclearEnergyGenerationRate',['../structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008',1,'gridfire::StepDerivatives']]],
- ['num_5fspecies_27',['num_species',['../classgridfire_1_1reaction_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97',1,'gridfire::reaction::Reaction::num_species()'],['../classgridfire_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97',1,'gridfire::Reaction::num_species()']]],
- ['num_5fsteps_28',['num_steps',['../structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6',1,'gridfire::NetOut']]],
- ['numerical_20solver_20strategies_29',['Numerical Solver Strategies',['../index.html#autotoc_md13',1,'']]],
- ['numspecies_30',['numSpecies',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c',1,'gridfire::exceptions::StaleEngineTrigger']]],
- ['nvar_31',['nVar',['../structgridfire_1_1approx8_1_1_approx8_net.html#a7218aa9b3dbe7c6eca52119e115692db',1,'gridfire::approx8::Approx8Net']]]
+ ['ic12_0',['ic12',['../structgridfire_1_1approx8_1_1_approx8_net.html#a95b9a07e29285884e6de523f8132f653',1,'gridfire::approx8::Approx8Net']]],
+ ['id_1',['id',['../classgridfire_1_1reaction_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905',1,'gridfire::reaction::Reaction::id()'],['../classgridfire_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905',1,'gridfire::Reaction::id()']]],
+ ['idensity_2',['iDensity',['../structgridfire_1_1approx8_1_1_approx8_net.html#a562c2383f585d3e9984225584d61c037',1,'gridfire::approx8::Approx8Net']]],
+ ['identifiedisotope_3',['IdentifiedIsotope',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+ ['identifymeanslowestpool_4',['identifyMeanSlowestPool',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a54ca8004fbd8d6d3ea6f67efeb5dbc8d',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['ienergy_5',['iEnergy',['../structgridfire_1_1approx8_1_1_approx8_net.html#a18501627dceb5d084bc7ba19f119826f',1,'gridfire::approx8::Approx8Net']]],
+ ['ih1_6',['ih1',['../structgridfire_1_1approx8_1_1_approx8_net.html#acc735a17e005f7e25c68a86d9735ec4c',1,'gridfire::approx8::Approx8Net']]],
+ ['ihe3_7',['ihe3',['../structgridfire_1_1approx8_1_1_approx8_net.html#ab0a43fee658efcaacfe7e6fb4870569b',1,'gridfire::approx8::Approx8Net']]],
+ ['ihe4_8',['ihe4',['../structgridfire_1_1approx8_1_1_approx8_net.html#a82977ad3df7f620e80a6235b3fe64731',1,'gridfire::approx8::Approx8Net']]],
+ ['img24_9',['img24',['../structgridfire_1_1approx8_1_1_approx8_net.html#a9647205f52fb0fa21316be39c3a6d709',1,'gridfire::approx8::Approx8Net']]],
+ ['implementations_10',['Future Solver Implementations',['../index.html#autotoc_md16',1,'']]],
+ ['implicit_20rosenbrock_20method_11',['DirectNetworkSolver (Implicit Rosenbrock Method)',['../index.html#autotoc_md14',1,'']]],
+ ['in_20directnetworksolver_12',['Algorithmic Workflow in DirectNetworkSolver',['../index.html#autotoc_md15',1,'']]],
+ ['in14_13',['in14',['../structgridfire_1_1approx8_1_1_approx8_net.html#a1af9135867aa3786721b89dbfdc4aee0',1,'gridfire::approx8::Approx8Net']]],
+ ['index_14',['INDEX',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87cacb4ae3b37047fb4b2c0d16f8bf84f076',1,'gridfire::expectations']]],
+ ['ine20_15',['ine20',['../structgridfire_1_1approx8_1_1_approx8_net.html#ad43418fd8c536ebc814d5e6de555256c',1,'gridfire::approx8::Approx8Net']]],
+ ['initialization_16',['C++ Example: GraphEngine Initialization',['../index.html#autotoc_md18',1,'']]],
+ ['initializeallreaclibreactions_17',['initializeAllReaclibReactions',['../namespacegridfire_1_1reaclib.html#a02ff11b88be94392151873e06a30b276',1,'gridfire::reaclib']]],
+ ['inputs_18',['inputs',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a0adf1074b5e6ba448cedff7563c450d0',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+ ['inputsatcompiletime_19',['InputsAtCompileTime',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a753b594931f9ee122e2079986ad572c9',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+ ['inputtype_20',['InputType',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3ebf684b36e98da38d8ee6f0be4f91e2',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
+ ['installation_21',['Installation',['../md_docs_2static_2usage.html#autotoc_md25',1,'1. Installation'],['../index.html#autotoc_md7',1,'Python Bindings and Installation']]],
+ ['installation_20instructions_22',['Build and Installation Instructions',['../index.html#autotoc_md2',1,'']]],
+ ['installation_20on_20common_20platforms_23',['Dependency Installation on Common Platforms',['../index.html#autotoc_md4',1,'']]],
+ ['installing_20the_20library_24',['Installing the Library',['../index.html#autotoc_md6',1,'']]],
+ ['instructions_25',['Build and Installation Instructions',['../index.html#autotoc_md2',1,'']]],
+ ['interpolationpoints_26',['InterpolationPoints',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+ ['involvesspecies_27',['involvesSpecies',['../classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b',1,'gridfire::GraphEngine']]],
+ ['io_2eh_28',['io.h',['../io_8h.html',1,'']]],
+ ['io16_29',['io16',['../structgridfire_1_1approx8_1_1_approx8_net.html#ab4e95622dc0414ad7e636ef811e600af',1,'gridfire::approx8::Approx8Net']]],
+ ['is_5fin_5fequilibrium_30',['is_in_equilibrium',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+ ['is_5freverse_31',['is_reverse',['../classgridfire_1_1reaction_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba',1,'gridfire::reaction::Reaction::is_reverse()'],['../classgridfire_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba',1,'gridfire::Reaction::is_reverse()']]],
+ ['isarithmeticorad_32',['IsArithmeticOrAD',['../conceptgridfire_1_1_is_arithmetic_or_a_d.html',1,'gridfire']]],
+ ['isdynamicengine_33',['IsDynamicEngine',['../concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html',1,'@012022023301355052304263320136165002200160012126']]],
+ ['isotopedata_34',['IsotopeData',['../structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
+ ['isprecomputationenabled_35',['isPrecomputationEnabled',['../classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f',1,'gridfire::GraphEngine']]],
+ ['isstale_36',['isStale',['../classgridfire_1_1_dynamic_engine.html#a942e65ced17ca602482cc42e469d6398',1,'gridfire::DynamicEngine::isStale()'],['../classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5',1,'gridfire::GraphEngine::isStale()'],['../classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88',1,'gridfire::AdaptiveEngineView::isStale()'],['../classgridfire_1_1_defined_engine_view.html#a7d9e738dd28efb4d6127de7379169c87',1,'gridfire::DefinedEngineView::isStale()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46',1,'gridfire::MultiscalePartitioningEngineView::isStale()'],['../class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14',1,'PyDynamicEngine::isStale()']]],
+ ['isstiff_37',['isStiff',['../classgridfire_1_1approx8_1_1_approx8_network.html#a5b17b2831389829533385900ce19a37a',1,'gridfire::approx8::Approx8Network::isStiff()'],['../classgridfire_1_1_network.html#ae93ad65deba79def4b77d420e7affa0b',1,'gridfire::Network::isStiff()']]],
+ ['isusingreversereactions_38',['isUsingReverseReactions',['../classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0',1,'gridfire::GraphEngine']]],
+ ['itemp_39',['iTemp',['../structgridfire_1_1approx8_1_1_approx8_net.html#a010df59d40b3bc8a802224968922ebde',1,'gridfire::approx8::Approx8Net']]]
];
diff --git a/docs/html/search/all_e.js b/docs/html/search/all_e.js
index a0c962da..327fc316 100644
--- a/docs/html/search/all_e.js
+++ b/docs/html/search/all_e.js
@@ -1,22 +1,6 @@
var searchData=
[
- ['o16a_5frate_0',['o16a_rate',['../namespacegridfire_1_1approx8.html#a7387008e672ea12d277e2194745a4c93',1,'gridfire::approx8']]],
- ['o16p_5frate_1',['o16p_rate',['../namespacegridfire_1_1approx8.html#a62c2f567dc1ada3816843c8586aad0dc',1,'gridfire::approx8']]],
- ['observe_2',['observe',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a226b007bfc9960b5c0bb7b88b4f122da',1,'gridfire::solver::DirectNetworkSolver::RHSManager']]],
- ['ode_3',['ODE',['../structgridfire_1_1approx8_1_1_o_d_e.html',1,'gridfire::approx8']]],
- ['on_20common_20platforms_4',['Dependency Installation on Common Platforms',['../index.html#autotoc_md4',1,'']]],
- ['operator_20std_3a_3astring_5',['string',['../structgridfire_1_1expectations_1_1_stale_engine_error.html#ad8ba0f62a2da0d93aba429181e7e6f84',1,'gridfire::expectations::StaleEngineError']]],
- ['operator_21_3d_6',['operator!=',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup::operator!=()'],['../classgridfire_1_1reaction_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51',1,'gridfire::reaction::Reaction::operator!=()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#aac76ec883b4ecebb2a94b2485dae7105',1,'gridfire::reaction::TemplatedReactionSet::operator!=()'],['../classgridfire_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51',1,'gridfire::Reaction::operator!=()']]],
- ['operator_28_29_7',['operator()',['../structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa',1,'gridfire::approx8::Jacobian::operator()()'],['../structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0',1,'gridfire::approx8::ODE::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html#aa947f9796cbee2c9473ba455f7e69ec3',1,'std::hash< gridfire::QSECacheKey >::operator()()'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7bd060a3eaaaefab0c31e60dcdb5f28',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor::operator()()'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aec8c0a0b2fbb71cebb40c263f64385b3',1,'gridfire::solver::DirectNetworkSolver::RHSManager::operator()()'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9',1,'std::hash< gridfire::reaction::Reaction >::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921',1,'std::hash< gridfire::reaction::ReactionSet >::operator()()'],['../structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html#a4b76e7119050266952ded94d6f0544cb',1,'std::hash< gridfire::reaction::LogicalReactionSet >::operator()()']]],
- ['operator_3c_8',['operator<',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
- ['operator_3c_3c_9',['operator<<',['../structgridfire_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736',1,'gridfire::PrimingReport::operator<<()'],['../structgridfire_1_1expectations_1_1_engine_error.html#a042b9486812f1cf963061a2497deabb7',1,'gridfire::expectations::EngineError::operator<<()'],['../structgridfire_1_1expectations_1_1_engine_index_error.html#af9bdb5b360c43dde624e47d83cad3903',1,'gridfire::expectations::EngineIndexError::operator<<()'],['../structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b',1,'gridfire::NetOut::operator<<()'],['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f',1,'gridfire::reaction::RateCoefficientSet::operator<<()'],['../classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8',1,'gridfire::reaction::Reaction::operator<<()'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a10cbea11653524dae2f7eafb5c22c90f',1,'gridfire::reaction::LogicalReaction::operator<<()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a47265467dbf2c324ce3e4c85ebbaa6a7',1,'gridfire::reaction::TemplatedReactionSet::operator<<()'],['../classgridfire_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8',1,'gridfire::Reaction::operator<<()'],['../namespacegridfire_1_1reaclib.html#a6bb94d5adc7bb9db5a67f770f7453e63',1,'gridfire::reaclib::operator<<()']]],
- ['operator_3d_10',['operator=',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac510dce14a6033551318c0c7b241f3c8',1,'gridfire::reaction::TemplatedReactionSet']]],
- ['operator_3d_3d_11',['operator==',['../structgridfire_1_1_q_s_e_cache_key.html#acfd92321fda5bc0ed1d2e803cbae6a81',1,'gridfire::QSECacheKey::operator==()'],['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup::operator==()'],['../classgridfire_1_1reaction_1_1_reaction.html#ac426457cf0a54a15b206549422083bac',1,'gridfire::reaction::Reaction::operator==()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a128660f5fbc67054f73811ed2982d24d',1,'gridfire::reaction::TemplatedReactionSet::operator==()'],['../classgridfire_1_1_reaction.html#ac426457cf0a54a15b206549422083bac',1,'gridfire::Reaction::operator==()']]],
- ['operator_3e_12',['operator>',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
- ['operator_5b_5d_13',['operator[]',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a638067a3e55ec2a422206055881aaaad',1,'gridfire::reaction::TemplatedReactionSet::operator[](size_t index) const'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a13e003529a17fa61aafdce3abd2dc773',1,'gridfire::reaction::TemplatedReactionSet::operator[](const std::string_view &id) const']]],
- ['operators_14',['operators',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
- ['operatorsnamemap_15',['operatorsNameMap',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afb930f4472f4bb713f0b606194762c6f',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
- ['options_16',['GraphEngine Configuration Options',['../index.html#autotoc_md10',1,'']]],
- ['other_17',['Other',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
- ['outputtype_18',['OutputType',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4d597d16bd9f982d44512d5a6beddae0',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]]
+ ['jacobian_0',['Jacobian',['../structgridfire_1_1approx8_1_1_jacobian.html',1,'gridfire::approx8']]],
+ ['jacobianfunctor_1',['JacobianFunctor',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25',1,'gridfire::solver::DirectNetworkSolver::JacobianFunctor::JacobianFunctor()']]],
+ ['jacobiantype_2',['JacobianType',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#ad7353c20a6eac2ac0d9d13791577080d',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]]
];
diff --git a/docs/html/search/all_f.js b/docs/html/search/all_f.js
index 7e4ea67b..070c2d50 100644
--- a/docs/html/search/all_f.js
+++ b/docs/html/search/all_f.js
@@ -1,62 +1,4 @@
var searchData=
[
- ['packreactionsettologicalreactionset_0',['packReactionSetToLogicalReactionSet',['../namespacegridfire_1_1reaction.html#abfcfafc0cda0c3ed56930a12e7ead67f',1,'gridfire::reaction']]],
- ['parse_1',['parse',['../classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf',1,'gridfire::io::NetworkFileParser::parse()'],['../classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8',1,'gridfire::io::SimpleReactionListFileParser::parse()'],['../classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329',1,'gridfire::io::MESANetworkFileParser::parse()'],['../class_py_network_file_parser.html#afe09d1e5b07110e62cf4c6ec713cff54',1,'PyNetworkFileParser::parse()']]],
- ['parsednetworkdata_2',['ParsedNetworkData',['../namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352',1,'gridfire::io']]],
- ['parsespeciesstring_3',['parseSpeciesString',['../namespacegridfire_1_1reaclib.html#afc0deac6cbef076e8884e66fd3ab66e0',1,'gridfire::reaclib']]],
- ['partition_20functions_4',['Available Partition Functions',['../index.html#autotoc_md11',1,'']]],
- ['partition_2eh_5',['partition.h',['../partition_8h.html',1,'']]],
- ['partition_5fabstract_2eh_6',['partition_abstract.h',['../partition__abstract_8h.html',1,'']]],
- ['partition_5fcomposite_2ecpp_7',['partition_composite.cpp',['../partition__composite_8cpp.html',1,'']]],
- ['partition_5fcomposite_2eh_8',['partition_composite.h',['../partition__composite_8h.html',1,'']]],
- ['partition_5fground_2ecpp_9',['partition_ground.cpp',['../partition__ground_8cpp.html',1,'']]],
- ['partition_5fground_2eh_10',['partition_ground.h',['../partition__ground_8h.html',1,'']]],
- ['partition_5frauscher_5fthielemann_2ecpp_11',['partition_rauscher_thielemann.cpp',['../partition__rauscher__thielemann_8cpp.html',1,'']]],
- ['partition_5frauscher_5fthielemann_2eh_12',['partition_rauscher_thielemann.h',['../partition__rauscher__thielemann_8h.html',1,'']]],
- ['partition_5ftypes_2eh_13',['partition_types.h',['../partition__types_8h.html',1,'']]],
- ['partitionbytimescale_14',['partitionByTimescale',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#ad4d29ee55f89384807616d1068797067',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['partitionfunction_15',['PartitionFunction',['../classgridfire_1_1partition_1_1_partition_function.html',1,'gridfire::partition']]],
- ['partitionnetwork_16',['partitionNetwork',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c',1,'gridfire::MultiscalePartitioningEngineView::partitionNetwork(const std::vector< double > &Y, double T9, double rho)'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a98b11ffe498846f5a3a72f08504346b7',1,'gridfire::MultiscalePartitioningEngineView::partitionNetwork(const NetIn &netIn)']]],
- ['pename_17',['peName',['../classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97',1,'gridfire::reaction::Reaction::peName()'],['../classgridfire_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97',1,'gridfire::Reaction::peName()']]],
- ['platforms_18',['Dependency Installation on Common Platforms',['../index.html#autotoc_md4',1,'']]],
- ['populatereactionidmap_19',['populateReactionIDMap',['../classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567',1,'gridfire::GraphEngine']]],
- ['populatespeciestoindexmap_20',['populateSpeciesToIndexMap',['../classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391',1,'gridfire::GraphEngine']]],
- ['pp_5frate_21',['pp_rate',['../namespacegridfire_1_1approx8.html#a16739298c01e56967ce784a9a957439f',1,'gridfire::approx8']]],
- ['precomputedreaction_22',['PrecomputedReaction',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html',1,'gridfire::GraphEngine']]],
- ['precomputenetwork_23',['precomputeNetwork',['../classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd',1,'gridfire::GraphEngine']]],
- ['prerequisites_24',['Prerequisites',['../index.html#autotoc_md3',1,'']]],
- ['primedcomposition_25',['primedComposition',['../structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb',1,'gridfire::PrimingReport']]],
- ['primeengine_26',['primeEngine',['../classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e',1,'gridfire::DynamicEngine::primeEngine()'],['../classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e',1,'gridfire::GraphEngine::primeEngine()'],['../classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3',1,'gridfire::AdaptiveEngineView::primeEngine()'],['../classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460',1,'gridfire::DefinedEngineView::primeEngine()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235',1,'gridfire::MultiscalePartitioningEngineView::primeEngine()'],['../class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878',1,'PyDynamicEngine::primeEngine()']]],
- ['primenetwork_27',['primeNetwork',['../namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f',1,'gridfire']]],
- ['priming_2ecpp_28',['priming.cpp',['../priming_8cpp.html',1,'']]],
- ['priming_2eh_29',['priming.h',['../priming_8h.html',1,'']]],
- ['primingreport_30',['PrimingReport',['../structgridfire_1_1_priming_report.html',1,'gridfire']]],
- ['primingreportstatus_31',['PrimingReportStatus',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154',1,'gridfire']]],
- ['primingreportstatusstrings_32',['PrimingReportStatusStrings',['../namespacegridfire.html#a02be158966bf82a91b159b7a962c3fa5',1,'gridfire']]],
- ['product_5fpowers_33',['product_powers',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3ce63aa3ad88568f4eb0d3ca2414209f',1,'gridfire::GraphEngine::PrecomputedReaction']]],
- ['product_5fspecies_34',['product_species',['../classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c',1,'gridfire::reaction::Reaction::product_species()'],['../classgridfire_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c',1,'gridfire::Reaction::product_species()']]],
- ['products_35',['products',['../classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02',1,'gridfire::reaction::Reaction::products()'],['../classgridfire_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02',1,'gridfire::Reaction::products()']]],
- ['products_5fstr_36',['products_str',['../structgridfire_1_1reaclib_1_1_reaction_record.html#af1b1d3b0308d965ef0697b247fcf9082',1,'gridfire::reaclib::ReactionRecord']]],
- ['projects_37',['Related Projects',['../index.html#autotoc_md22',1,'']]],
- ['py_5fengine_2ecpp_38',['py_engine.cpp',['../py__engine_8cpp.html',1,'']]],
- ['py_5fengine_2eh_39',['py_engine.h',['../py__engine_8h.html',1,'']]],
- ['py_5fio_2ecpp_40',['py_io.cpp',['../py__io_8cpp.html',1,'']]],
- ['py_5fio_2eh_41',['py_io.h',['../py__io_8h.html',1,'']]],
- ['py_5fpartition_2ecpp_42',['py_partition.cpp',['../py__partition_8cpp.html',1,'']]],
- ['py_5fpartition_2eh_43',['py_partition.h',['../py__partition_8h.html',1,'']]],
- ['py_5fscreening_2ecpp_44',['py_screening.cpp',['../py__screening_8cpp.html',1,'']]],
- ['py_5fscreening_2eh_45',['py_screening.h',['../py__screening_8h.html',1,'']]],
- ['py_5fsolver_2ecpp_46',['py_solver.cpp',['../py__solver_8cpp.html',1,'']]],
- ['py_5fsolver_2eh_47',['py_solver.h',['../py__solver_8h.html',1,'']]],
- ['pybind11_5fmodule_48',['PYBIND11_MODULE',['../bindings_8cpp.html#aa8955e3a8d1ea2d94e8a2c941a12c03f',1,'bindings.cpp']]],
- ['pydynamicengine_49',['PyDynamicEngine',['../class_py_dynamic_engine.html',1,'']]],
- ['pydynamicengineview_50',['PyDynamicEngineView',['../class_py_dynamic_engine_view.html',1,'']]],
- ['pydynamicnetworksolverstrategy_51',['PyDynamicNetworkSolverStrategy',['../class_py_dynamic_network_solver_strategy.html',1,'PyDynamicNetworkSolverStrategy'],['../class_py_dynamic_network_solver_strategy.html#a4a3fce2a9853e7192354834bf2b36159',1,'PyDynamicNetworkSolverStrategy::PyDynamicNetworkSolverStrategy()']]],
- ['pyengine_52',['PyEngine',['../class_py_engine.html',1,'']]],
- ['pyengineview_53',['PyEngineView',['../class_py_engine_view.html',1,'']]],
- ['pynetworkfileparser_54',['PyNetworkFileParser',['../class_py_network_file_parser.html',1,'']]],
- ['pypartitionfunction_55',['PyPartitionFunction',['../class_py_partition_function.html',1,'']]],
- ['pyscreening_56',['PyScreening',['../class_py_screening.html',1,'']]],
- ['python_20bindings_20and_20installation_57',['Python Bindings and Installation',['../index.html#autotoc_md7',1,'']]],
- ['python_20example_58',['Python Example',['../index.html#autotoc_md20',1,'']]]
+ ['kb_0',['kB',['../structgridfire_1_1_graph_engine_1_1constants.html#a29c8ae2b5c1d5fecd25c4fde2b623f7f',1,'gridfire::GraphEngine::constants']]]
];
diff --git a/docs/html/search/files_a.js b/docs/html/search/files_a.js
new file mode 100644
index 00000000..039061f1
--- /dev/null
+++ b/docs/html/search/files_a.js
@@ -0,0 +1,4 @@
+var searchData=
+[
+ ['usage_2emd_0',['usage.md',['../usage_8md.html',1,'']]]
+];
diff --git a/docs/html/search/functions_14.js b/docs/html/search/functions_14.js
index 82e13c97..a57cb465 100644
--- a/docs/html/search/functions_14.js
+++ b/docs/html/search/functions_14.js
@@ -1,9 +1,8 @@
var searchData=
[
- ['validatecomposition_0',['validateComposition',['../classgridfire_1_1_graph_engine.html#aeeafeab40a5f4dbfae78bdc87e25e93f',1,'gridfire::GraphEngine']]],
- ['validateconservation_1',['validateConservation',['../classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be',1,'gridfire::GraphEngine']]],
- ['validategroupswithfluxanalysis_2',['validateGroupsWithFluxAnalysis',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aa55ed182301d216264daae3e6dfd8917',1,'gridfire::MultiscalePartitioningEngineView']]],
- ['validatenetworkstate_3',['validateNetworkState',['../classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0',1,'gridfire::DefinedEngineView']]],
- ['validatestate_4',['validateState',['../classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40',1,'gridfire::AdaptiveEngineView']]],
- ['values_5',['values',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6d13bb5294f5dae7e2eb1d26720f944e',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]]
+ ['validateconservation_0',['validateConservation',['../classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be',1,'gridfire::GraphEngine']]],
+ ['validategroupswithfluxanalysis_1',['validateGroupsWithFluxAnalysis',['../classgridfire_1_1_multiscale_partitioning_engine_view.html#aa55ed182301d216264daae3e6dfd8917',1,'gridfire::MultiscalePartitioningEngineView']]],
+ ['validatenetworkstate_2',['validateNetworkState',['../classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0',1,'gridfire::DefinedEngineView']]],
+ ['validatestate_3',['validateState',['../classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40',1,'gridfire::AdaptiveEngineView']]],
+ ['values_4',['values',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a6d13bb5294f5dae7e2eb1d26720f944e',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]]
];
diff --git a/docs/html/search/pages_0.js b/docs/html/search/pages_0.js
index 2c219d2d..94387043 100644
--- a/docs/html/search/pages_0.js
+++ b/docs/html/search/pages_0.js
@@ -1,4 +1,6 @@
var searchData=
[
- ['gridfire_0',['GridFire',['../index.html',1,'']]]
+ ['gridfire_0',['GridFire',['../index.html',1,'']]],
+ ['gridfire_20python_20usage_20guide_1',['GridFire Python Usage Guide',['../md_docs_2static_2usage.html',1,'']]],
+ ['guide_2',['GridFire Python Usage Guide',['../md_docs_2static_2usage.html',1,'']]]
];
diff --git a/docs/html/search/pages_1.js b/docs/html/search/pages_1.js
index feadd945..0f6b7f54 100644
--- a/docs/html/search/pages_1.js
+++ b/docs/html/search/pages_1.js
@@ -1,4 +1,4 @@
var searchData=
[
- ['list_0',['Todo List',['../todo.html',1,'']]]
+ ['python_20usage_20guide_0',['GridFire Python Usage Guide',['../md_docs_2static_2usage.html',1,'']]]
];
diff --git a/docs/html/search/pages_2.js b/docs/html/search/pages_2.js
index 83220efb..d99957c4 100644
--- a/docs/html/search/pages_2.js
+++ b/docs/html/search/pages_2.js
@@ -1,4 +1,4 @@
var searchData=
[
- ['todo_20list_0',['Todo List',['../todo.html',1,'']]]
+ ['usage_20guide_0',['GridFire Python Usage Guide',['../md_docs_2static_2usage.html',1,'']]]
];
diff --git a/docs/html/search/searchdata.js b/docs/html/search/searchdata.js
index 18a810cd..698ee1b3 100644
--- a/docs/html/search/searchdata.js
+++ b/docs/html/search/searchdata.js
@@ -1,16 +1,16 @@
var indexSectionsWithContent =
{
- 0: "abcdefghijklmnopqrstuvwyz~",
+ 0: "12345abcdefghijklmnopqrstuvwyz~",
1: "abcdefghijlmnopqrstuw",
2: "gs",
- 3: "bceilmnprs",
+ 3: "bceilmnprsu",
4: "abcdefghijlmnopqrstuvw~",
5: "abcdefgiklmnopqrstuyz",
6: "abcdijlmopqrsv",
7: "benops",
8: "abcfgimnorstuvw",
9: "o",
- 10: "g",
+ 10: "gpu",
11: "ei"
};
diff --git a/docs/html/search/variables_10.js b/docs/html/search/variables_10.js
index 50dd200f..6cacb347 100644
--- a/docs/html/search/variables_10.js
+++ b/docs/html/search/variables_10.js
@@ -1,15 +1,14 @@
var searchData=
[
['s_5fall_5freaclib_5freactions_5fptr_0',['s_all_reaclib_reactions_ptr',['../namespacegridfire_1_1reaclib.html#a5dba5efc372d2a9e9e846dfd6563f3c0',1,'gridfire::reaclib']]],
- ['s_5fdebug_1',['s_debug',['../namespacegridfire.html#afd6f117eb2da3bab3873edc09d0926cf',1,'gridfire']]],
- ['s_5finitialized_2',['s_initialized',['../namespacegridfire_1_1reaclib.html#af6ff0dfe7ffe34c73ba9acbab5ef8a66',1,'gridfire::reaclib']]],
- ['s_5foperator_5fparens_5fcalled_3',['s_operator_parens_called',['../namespacegridfire.html#a8b632637f62614f509cde0e404a79054',1,'gridfire']]],
- ['seed_5findices_4',['seed_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
- ['species_5findices_5',['species_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
- ['staletype_6',['staleType',['../structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590',1,'gridfire::expectations::StaleEngineError']]],
- ['status_7',['status',['../structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d',1,'gridfire::PrimingReport']]],
- ['stoichiometric_5fcoefficients_8',['stoichiometric_coefficients',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c',1,'gridfire::GraphEngine::PrecomputedReaction']]],
- ['stringtobasepartitiontype_9',['stringToBasePartitionType',['../namespacegridfire_1_1partition.html#a84de6308486d35ce8bc1a9dea52dfa4a',1,'gridfire::partition']]],
- ['success_10',['success',['../structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3',1,'gridfire::PrimingReport']]],
- ['symmetry_5ffactor_11',['symmetry_factor',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e',1,'gridfire::GraphEngine::PrecomputedReaction']]]
+ ['s_5finitialized_1',['s_initialized',['../namespacegridfire_1_1reaclib.html#af6ff0dfe7ffe34c73ba9acbab5ef8a66',1,'gridfire::reaclib']]],
+ ['s_5foperator_5fparens_5fcalled_2',['s_operator_parens_called',['../namespacegridfire.html#a8b632637f62614f509cde0e404a79054',1,'gridfire']]],
+ ['seed_5findices_3',['seed_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a997efc7ef138efb0e60e60790fcce681',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+ ['species_5findices_4',['species_indices',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a3840e7faa591b7c3006b27ae3df9e21e',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
+ ['staletype_5',['staleType',['../structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590',1,'gridfire::expectations::StaleEngineError']]],
+ ['status_6',['status',['../structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d',1,'gridfire::PrimingReport']]],
+ ['stoichiometric_5fcoefficients_7',['stoichiometric_coefficients',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c',1,'gridfire::GraphEngine::PrecomputedReaction']]],
+ ['stringtobasepartitiontype_8',['stringToBasePartitionType',['../namespacegridfire_1_1partition.html#a84de6308486d35ce8bc1a9dea52dfa4a',1,'gridfire::partition']]],
+ ['success_9',['success',['../structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3',1,'gridfire::PrimingReport']]],
+ ['symmetry_5ffactor_10',['symmetry_factor',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e',1,'gridfire::GraphEngine::PrecomputedReaction']]]
];
diff --git a/docs/html/solver_8cpp_source.html b/docs/html/solver_8cpp_source.html
index 189a8fc7..2050b416 100644
--- a/docs/html/solver_8cpp_source.html
+++ b/docs/html/solver_8cpp_source.html
@@ -358,7 +358,7 @@ $(function(){initNavTree('solver_8cpp_source.html',''); initResizable(true); });
-static constexpr double MIN_ABUNDANCE_THRESHOLD
Minimum abundance threshold below which species are ignored.
static constexpr double MIN_ABUNDANCE_THRESHOLD
Minimum abundance threshold below which species are ignored.
-
Definition at line 385 of file engine_graph.h .
+
Definition at line 384 of file engine_graph.h .
◆
@@ -146,7 +146,7 @@ Public Attributes
@@ -164,7 +164,7 @@ Public Attributes
Powers of each unique product in the reverse reaction.
-
Definition at line 396 of file engine_graph.h .
+
Definition at line 395 of file engine_graph.h .
@@ -180,7 +180,7 @@ Public Attributes
@@ -196,7 +196,7 @@ Public Attributes
@@ -214,7 +214,7 @@ Public Attributes
Symmetry factor for reverse reactions.
-
Definition at line 397 of file engine_graph.h .
+
Definition at line 396 of file engine_graph.h .
@@ -230,7 +230,7 @@ Public Attributes
@@ -246,7 +246,7 @@ Public Attributes
@@ -264,7 +264,7 @@ Public Attributes
Unique product indices for reverse reactions.
-
Definition at line 395 of file engine_graph.h .
+
Definition at line 394 of file engine_graph.h .
@@ -280,7 +280,7 @@ Public Attributes
diff --git a/docs/html/structgridfire_1_1_graph_engine_1_1constants.html b/docs/html/structgridfire_1_1_graph_engine_1_1constants.html
index 48ca8284..d032d9a9 100644
--- a/docs/html/structgridfire_1_1_graph_engine_1_1constants.html
+++ b/docs/html/structgridfire_1_1_graph_engine_1_1constants.html
@@ -123,7 +123,7 @@ Public Attributes
-
Definition at line 400 of file engine_graph.h .
+
Definition at line 399 of file engine_graph.h .
@@ -139,7 +139,7 @@ Public Attributes
Speed of light in cm/s.
-
Definition at line 403 of file engine_graph.h .
+
Definition at line 402 of file engine_graph.h .
@@ -157,7 +157,7 @@ Public Attributes
Boltzmann constant in erg/K.
-
Definition at line 404 of file engine_graph.h .
+
Definition at line 403 of file engine_graph.h .
@@ -175,7 +175,7 @@ Public Attributes
Avogadro's number.
-
Definition at line 402 of file engine_graph.h .
+
Definition at line 401 of file engine_graph.h .
Atomic mass unit in g.
-Definition at line 401 of file engine_graph.h .
+Definition at line 400 of file engine_graph.h .
diff --git a/docs/html/usage_8md.html b/docs/html/usage_8md.html
new file mode 100644
index 00000000..ed4ffe7c
--- /dev/null
+++ b/docs/html/usage_8md.html
@@ -0,0 +1,115 @@
+
+
+
+GridFire: docs/static/usage.md File Reference
+
+
+
+
+
+
+ GridFire 0.0.1a
+
+ General Purpose Nuclear Network
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
Loading...
+
Searching...
+
No Matches
+
+
+
+
+
+
+
+
+
1.13.2
+