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docs(docs): asdded and cleaned up docs

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This commit is contained in:
Emily Boudreaux
2025-07-24 11:10:45 -04:00
parent cc3708fda5
commit ba9b3e2392
808 changed files with 140326 additions and 9346 deletions
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39
src/lib/engine/engine_graph.cpp
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@@ -667,20 +667,6 @@ namespace gridfire {
}
adInput[numSpecies] = T9; // T9
adInput[numSpecies + 1] = rho; // rho
// LOG_DEBUG(
// m_logger,
// "AD Input to jacobian {}",
// [&]() -> std::string {
// std::stringstream ss;
// ss << std::scientific << std::setprecision(5);
// for (size_t i = 0; i < adInput.size(); ++i) {
// ss << adInput[i];
// if (i < adInput.size() - 1) {
// ss << ", ";
// }
// }
// return ss.str();
// }());
// 2. Calculate the full jacobian
const std::vector<double> dotY = m_rhsADFun.Jacobian(adInput);
@@ -695,31 +681,6 @@ namespace gridfire {
}
}
}
// LOG_DEBUG(
// m_logger,
// "Final Jacobian is:\n{}",
// [&]() -> std::string {
// std::stringstream ss;
// ss << std::scientific << std::setprecision(5);
// for (size_t i = 0; i < m_jacobianMatrix.size1(); ++i) {
// ss << getNetworkSpecies()[i].name();
// if (i < m_jacobianMatrix.size1() - 1) {
// ss << ", ";
// }
// }
// ss << "\n";
// for (size_t i = 0; i < m_jacobianMatrix.size1(); ++i) {
// ss << getNetworkSpecies()[i].name() << ": ";
// for (size_t j = 0; j < m_jacobianMatrix.size2(); ++j) {
// ss << m_jacobianMatrix(i, j);
// if (j < m_jacobianMatrix.size2() - 1) {
// ss << ", ";
// }
// }
// ss << "\n";
// }
// return ss.str();
// }());
LOG_TRACE_L1_LIMIT_EVERY_N(1000, m_logger, "Jacobian matrix generated with dimensions: {} rows x {} columns.", m_jacobianMatrix.size1(), m_jacobianMatrix.size2());
}