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docs(docs): asdded and cleaned up docs

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Emily Boudreaux
2025-07-24 11:10:45 -04:00
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@@ -102,20 +102,26 @@ $(function(){initNavTree('functions_r.html',''); initResizable(true); });
<div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
<h3><a id="index_r" name="index_r"></a>- r -</h3><ul>
<li>rateCoefficients()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e">gridfire::reaction::Reaction</a></li>
<li>rateCoefficients()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e">gridfire::reaction::Reaction</a></li>
<li>RauscherThielemannPartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ae67464baee3b12cdc0470be74524866c">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
<li>reactant_powers&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275">gridfire::GraphEngine::PrecomputedReaction</a></li>
<li>reactant_species()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923">gridfire::reaction::Reaction</a></li>
<li>reactants()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b">gridfire::reaction::Reaction</a></li>
<li>reactant_species()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923">gridfire::reaction::Reaction</a></li>
<li>reactants()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b">gridfire::reaction::Reaction</a></li>
<li>reactants_str&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#a67afc513db8dbcc43d79733e22ca8d39">gridfire::reaclib::ReactionRecord</a></li>
<li>Reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c">gridfire::reaction::Reaction</a></li>
<li>Reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c">gridfire::reaction::Reaction</a></li>
<li>reaction_index&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497">gridfire::GraphEngine::PrecomputedReaction</a></li>
<li>reactionPENames&#160;:&#160;<a class="el" href="structgridfire_1_1io_1_1_parsed_network_data.html#a5145c672877638e6113abf1f719b246d">gridfire::io::ParsedNetworkData</a></li>
<li>reactionPtr&#160;:&#160;<a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html#a3bb21f20df8115d37108cf3c3be3bc6f">gridfire::AdaptiveEngineView::ReactionFlow</a></li>
<li>rebuild()&#160;:&#160;<a class="el" href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490">gridfire::GraphEngine</a>, <a class="el" href="class_py_dynamic_engine.html#a3d30a9116825ab2c5c209bc2712126bc">PyDynamicEngine</a></li>
<li>recordADTape()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889">gridfire::GraphEngine</a></li>
<li>remove_reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a89c4c5af12aef7fbfc24316c88237e22">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
<li>reserveJacobianMatrix()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a5a5458ed01923124f2d7e1f04f32f138">gridfire::GraphEngine</a></li>
<li>reverse&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd">gridfire::reaclib::ReactionRecord</a></li>
<li>RHSFunctor()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#aed201b52ea757069c17a49e9638b3d3c">gridfire::solver::DirectNetworkSolver::RHSFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a5353d8e6f27b6c435084a167bc009e46">gridfire::solver::QSENetworkSolver::RHSFunctor</a></li>
<li>rescueEdgeSpeciesDestructionChannel()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f">gridfire::AdaptiveEngineView</a></li>
<li>RescueSet&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a4ff60b5214ec0bdaf683feb6615573a5">gridfire::AdaptiveEngineView</a></li>
<li>reserveJacobianMatrix()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5">gridfire::GraphEngine</a></li>
<li>rev_sparse_jac()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4">gridfire::GraphEngine::AtomicReverseRate</a></li>
<li>reverse()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e">gridfire::GraphEngine::AtomicReverseRate</a>, <a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#aa1fd4f510d7c00d2e4197e9b9caf29fd">gridfire::reaclib::ReactionRecord</a></li>
<li>reverse_symmetry_factor&#160;:&#160;<a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6bcfe2230dd54b088180d34389266b07">gridfire::GraphEngine::PrecomputedReaction</a></li>
<li>rho_tol&#160;:&#160;<a class="el" href="structgridfire_1_1_q_s_e_cache_config.html#a57b7ca68463aa9b78007e5cf35ebf7ce">gridfire::QSECacheConfig</a></li>
<li>RHSManager()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#affaaa55fc49d85e5de73f3a6ad5da7c0">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
<li>rpName&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#a523b7cfb0a6d8ddccd785aef2f425ad1">gridfire::reaclib::ReactionRecord</a></li>
</ul>
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