docs(docs): asdded and cleaned up docs

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2025-07-24 11:10:45 -04:00
parent cc3708fda5
commit ba9b3e2392
808 changed files with 140326 additions and 9346 deletions

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@@ -102,69 +102,113 @@ $(function(){initNavTree('functions_m.html',''); initResizable(true); });
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<li>m_logger&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66">gridfire::io::SimpleReactionListFileParser</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5">gridfire::Network</a>, <a class="el" href="classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d">gridfire::NetworkPrimingEngineView</a>, <a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#aff8f82f918380795e98c30a00fcd939b">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a57384ffb1c81cf982614d90e23b173b6">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classgridfire_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7044d0a1d59d85502ce554e4ec2167e4">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac6fcc5b08938b73ff6dac680e5bf28d9">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a0a4d7d6d36dbe7b764b613d34f18386f">gridfire::screening::WeakScreeningModel</a>, <a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079">gridfire::solver::DirectNetworkSolver</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a6cc605a83b5ac5ae048d1044be284ada">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
<li>m_logManager&#160;:&#160;<a class="el" href="classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16">gridfire::Network</a></li>
<li>m_message&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a77c9a660a2748c2e3a1c7e94edad1cf0">gridfire::exceptions::FailedToPartitionEngineError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html#a581527fc03fdd84a8309c147259ec09d">gridfire::exceptions::NetworkResizedError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb">gridfire::exceptions::StaleEngineError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047">gridfire::exceptions::UnableToSetNetworkReactionsError</a>, <a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html#ad05b8d2f5ce9925f749c9f528f2428dc">gridfire::expectations::EngineError</a></li>
<li>m_miss&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a73ca615753553f4a85160bd9f166da5b">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
<li>m_networkSpecies&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc">gridfire::GraphEngine</a></li>
<li>m_networkSpeciesMap&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827">gridfire::GraphEngine</a></li>
<li>m_numSpecies&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#ac4a1af03d2a4fbc5cc2407b8a6833147">gridfire::solver::DirectNetworkSolver::RHSFunctor</a></li>
<li>m_num_steps&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
<li>m_operatorHits&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac18229250c4c160aada96e19325faa29">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
<li>m_operatorMisses&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#afc5299ebf09f9b208f65619012902b77">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
<li>m_parser&#160;:&#160;<a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500">gridfire::FileDefinedEngineView</a></li>
<li>m_peName&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248">gridfire::reaction::Reaction</a></li>
<li>m_partitionData&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a50ce19df4c12e22bbcb61422248a4038">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
<li>m_partitionFunction&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e">gridfire::GraphEngine</a></li>
<li>m_partitionFunctions&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8">gridfire::partition::CompositePartitionFunction</a></li>
<li>m_peName&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a6124aa9fc2306349e1dd879a37923248">gridfire::reaction::Reaction</a></li>
<li>m_precomputedReactions&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3">gridfire::GraphEngine</a></li>
<li>m_products&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e">gridfire::reaction::Reaction</a></li>
<li>m_QSESpeciesIndices&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">gridfire::solver::QSENetworkSolver::EigenFunctor&lt; T &gt;</a>, <a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_jacobian_functor.html#a1b92391170eb46771bd499aa8d115334">gridfire::solver::QSENetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a6be7259897a47ce480b289144b06e269">gridfire::solver::QSENetworkSolver::RHSFunctor</a></li>
<li>m_qValue&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b">gridfire::reaction::Reaction</a></li>
<li>m_rateCoefficients&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72">gridfire::reaction::Reaction</a></li>
<li>m_primingSpecies&#160;:&#160;<a class="el" href="classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5">gridfire::NetworkPrimingEngineView</a></li>
<li>m_products&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a4b5607ed413acdf29539b8a57461e49e">gridfire::reaction::Reaction</a></li>
<li>m_qse_abundance_cache&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a707e46d2f72993c206210f81b35b884e">gridfire::MultiscalePartitioningEngineView</a></li>
<li>m_qse_groups&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b4aa04a1e641204e4fd82361b0e39c6">gridfire::MultiscalePartitioningEngineView</a></li>
<li>m_qse_solve_indices&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4eb11e99dc2a7e038d815bf7c6bd0be8">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
<li>m_qValue&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a59122a2898bb9af640cc3e9aeb49028b">gridfire::reaction::Reaction</a></li>
<li>m_rateCoefficients&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa61a9a024d7c4ff66a351ccd0277ec72">gridfire::reaction::Reaction</a></li>
<li>m_rates&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#a81f75f0085f8a5a45169f0b7240c809d">gridfire::reaction::LogicalReaction</a></li>
<li>m_reactants&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11">gridfire::reaction::Reaction</a></li>
<li>m_reactants&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a87a065b3c7806bcdb5eadb7de2978a11">gridfire::reaction::Reaction</a></li>
<li>m_reaction&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a98ed8b450f7868f55e8362a848a4710d">gridfire::GraphEngine::AtomicReverseRate</a></li>
<li>m_reactionIDMap&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3">gridfire::GraphEngine</a></li>
<li>m_reactionIndexMap&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#af0a77a4749a15aae87bdecfccbd1736e">gridfire::FileDefinedEngineView</a></li>
<li>m_reactionIndexMap&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd">gridfire::DefinedEngineView</a></li>
<li>m_reactionNameMap&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a3a4c2448865580001fd3c797b9f56979">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
<li>m_reactions&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#acb7c4f5108b0efeae48ad15598e808c3">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a5962968fe478c79250e9d88d80a87600">gridfire::reaction::TemplatedReactionSet&lt; ReactionT &gt;</a></li>
<li>m_reverse&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0b0b9ac498080aae91ffd466d1ae85a9">gridfire::reaction::Reaction</a></li>
<li>m_rho&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a7d4f7f04c4ee6f0b519194f87aa265e7">gridfire::solver::DirectNetworkSolver::RHSFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ab0a0d4c166e97b971543cbbf2b0a1a2e">gridfire::solver::QSENetworkSolver::EigenFunctor&lt; T &gt;</a>, <a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_jacobian_functor.html#a0907f7b6c1a87baf5e39fbc17a30df82">gridfire::solver::QSENetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#adc0f8e655af42f414dcb220a7224f261">gridfire::solver::QSENetworkSolver::RHSFunctor</a></li>
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<li>m_rho&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a93cdb544a9d11cc259e6adbc49c60c44">gridfire::exceptions::StaleEngineTrigger::state</a>, <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a4dc013f4fb9d93b38ef601741dbe4d4c">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#abb0d1c5b8c88ae2edbc1f8d3b8759f63">gridfire::QSECacheKey</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
<li>m_rhsADFun&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876">gridfire::GraphEngine</a></li>
<li>m_screeningModel&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210">gridfire::GraphEngine</a></li>
<li>m_screeningType&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80">gridfire::GraphEngine</a></li>
<li>m_sourceLabel&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6">gridfire::reaction::Reaction</a></li>
<li>m_sourceLabel&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0185c6be5465d113f25e00aee1297cd6">gridfire::reaction::Reaction</a></li>
<li>m_sources&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#a7fe91d24e20ebc76d612f6ad742f476f">gridfire::reaction::LogicalReaction</a></li>
<li>m_speciesIndexMap&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">gridfire::FileDefinedEngineView</a></li>
<li>m_species_cache&#160;:&#160;<a class="el" href="class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03">PyDynamicEngine</a>, <a class="el" href="class_py_engine.html#a73caaa7606e2cdfd1aa82729a78ebb73">PyEngine</a></li>
<li>m_speciesIndexMap&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#acc4976262e208d1dd2185ebccbdd275e">gridfire::DefinedEngineView</a></li>
<li>m_speciesToIndexMap&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7">gridfire::GraphEngine</a></li>
<li>m_state&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a7f9fa2e34da3772714723ef7d5083be5">gridfire::exceptions::StaleEngineTrigger</a></li>
<li>m_stiff&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a697cb49bebc8d0659eb791500c451c67">gridfire::approx8::Approx8Network</a>, <a class="el" href="classgridfire_1_1_network.html#aefe364ae5af783e19e7b93bfd475566e">gridfire::Network</a></li>
<li>m_stoichiometryMatrix&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24">gridfire::GraphEngine</a></li>
<li>m_T9&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a082844f1eae0609e66620575210e8823">gridfire::solver::DirectNetworkSolver::RHSFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a6771ae56ddd9058954b42ee92a378309">gridfire::solver::QSENetworkSolver::EigenFunctor&lt; T &gt;</a>, <a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_jacobian_functor.html#a85f88639447a9a706008efece82ff289">gridfire::solver::QSENetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a35026100163c7cc6fdb4c2e4d988b8cb">gridfire::solver::QSENetworkSolver::RHSFunctor</a></li>
<li>m_t&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a352cd33629e63286808df617d36cb70b">gridfire::exceptions::StaleEngineTrigger::state</a></li>
<li>m_T9&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a4d15893a4a5aa09ee93c66a086a7f963">gridfire::exceptions::StaleEngineTrigger::state</a>, <a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a7f65ed75e9dca9b6e1160ad297e07678">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#a2ab20b15ab7f9da15c36989e8d9a2bc7">gridfire::QSECacheKey</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef">gridfire::solver::DirectNetworkSolver::RHSManager</a></li>
<li>m_tMax&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a6fadf388f07c160f1887a3cb72eaa869">gridfire::approx8::Approx8Network</a></li>
<li>m_total_steps&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#ac1cddf0f2955d4282afcf4a90a2de9c0">gridfire::exceptions::StaleEngineTrigger::state</a></li>
<li>m_usePrecomputation&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de">gridfire::GraphEngine</a></li>
<li>m_useReverseReactions&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc">gridfire::GraphEngine</a></li>
<li>m_view&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#af2acc70592e5545f9e8f0a33e10ffdc7">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
<li>m_Y&#160;:&#160;<a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html#a833c5b68a627fbceaf5ff0d15bcb0eaf">gridfire::exceptions::StaleEngineTrigger::state</a>, <a class="el" href="structgridfire_1_1_q_s_e_cache_key.html#afa8f157d3dd3505276294815357b028a">gridfire::QSECacheKey</a></li>
<li>m_y&#160;:&#160;<a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#abf9f13ff532917ddac4a7d987698836d">gridfire::approx8::Approx8Network</a></li>
<li>m_Y_QSE&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a02c23ef20d616bf5a591a274b66cd75a">gridfire::solver::QSENetworkSolver::RHSFunctor</a></li>
<li>m_YFull&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a2dca32a9e0bea5aea2a565f94b99a8de">gridfire::solver::QSENetworkSolver::EigenFunctor&lt; T &gt;</a></li>
<li>m_Y_full_initial&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3bc901d2d8234d1f61e94d0fe0777f7d">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
<li>m_Y_scale&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a8dd40205db7aef439b6f04289ca5dfd5">gridfire::MultiscalePartitioningEngineView::EigenFunctor</a></li>
<li>make_key()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a99c80e2f4ba36e88e08e2abd650a08fb">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ac58b95c8530f69f063c8ed8293487aec">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
<li>mapCulledToFull()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1">gridfire::AdaptiveEngineView</a></li>
<li>mapCulledToFullReactionIndex()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101">gridfire::AdaptiveEngineView</a></li>
<li>mapCulledToFullSpeciesIndex()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8">gridfire::AdaptiveEngineView</a></li>
<li>mapFullToCulled()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44">gridfire::AdaptiveEngineView</a></li>
<li>mapFullToView()&#160;:&#160;<a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a97e5ee4651dbe6754678fe96e4702fee">gridfire::FileDefinedEngineView</a></li>
<li>mapViewToFull()&#160;:&#160;<a class="el" href="classgridfire_1_1_file_defined_engine_view.html#adba3c11b11a04b2907c1635210d73dee">gridfire::FileDefinedEngineView</a></li>
<li>mapViewToFullReactionIndex()&#160;:&#160;<a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a74217a1f8fd8e6daff969cb17885315c">gridfire::FileDefinedEngineView</a></li>
<li>mapViewToFullSpeciesIndex()&#160;:&#160;<a class="el" href="classgridfire_1_1_file_defined_engine_view.html#aa2373955ef5b0eabf7a57c7208e38bb1">gridfire::FileDefinedEngineView</a></li>
<li>mapFullToView()&#160;:&#160;<a class="el" href="classgridfire_1_1_defined_engine_view.html#a2f59af6fb3516911de2a3e3ff0ed8873">gridfire::DefinedEngineView</a></li>
<li>mapNetInToMolarAbundanceVector()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a55f1b7e5ebe2840e1d7c54665ca5411a">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac">PyDynamicEngine</a></li>
<li>mapViewToFull()&#160;:&#160;<a class="el" href="classgridfire_1_1_defined_engine_view.html#a626ab005bfa08b201518c13627e1f843">gridfire::DefinedEngineView</a></li>
<li>mapViewToFullReactionIndex()&#160;:&#160;<a class="el" href="classgridfire_1_1_defined_engine_view.html#aadf373d69a22fcd171a6c251466d53d1">gridfire::DefinedEngineView</a></li>
<li>mapViewToFullSpeciesIndex()&#160;:&#160;<a class="el" href="classgridfire_1_1_defined_engine_view.html#af6fb8c3c7894b505bd81d15f012f154a">gridfire::DefinedEngineView</a></li>
<li>massFractionChanges&#160;:&#160;<a class="el" href="structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7">gridfire::PrimingReport</a></li>
<li>mean_timescale&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a66e6677638af72e4db75f5518dc867f9">gridfire::MultiscalePartitioningEngineView::QSEGroup</a></li>
<li>MESANetworkFileParser()&#160;:&#160;<a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c">gridfire::io::MESANetworkFileParser</a></li>
<li>MIDDLE&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
<li>mIon&#160;:&#160;<a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html#a928b7810cb2993d59d40aa73c2faef18">gridfire::approx8::Approx8Net</a></li>
<li>miss()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac55fb580dd4b9763cefe4612555b03f3">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
<li>misses()&#160;:&#160;<a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#a5df4f2c27e9eaa781c972a8c9b595787">gridfire::MultiscalePartitioningEngineView::CacheStats</a></li>
<li>MolarAbundance()&#160;:&#160;<a class="el" href="structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65">gridfire::NetIn</a></li>
<li>MultiscalePartitioningEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f">gridfire::MultiscalePartitioningEngineView</a></li>
</ul>
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