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docs(docs): asdded and cleaned up docs

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Emily Boudreaux
2025-07-24 11:10:45 -04:00
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@@ -102,14 +102,17 @@ $(function(){initNavTree('functions_func_p.html',''); initResizable(true); });
<div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
<h3><a id="index_p" name="index_p"></a>- p -</h3><ul>
<li>packSpeciesTypeIndexVectors()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a5d81ee5bfcfd5e77fe52201ba9e63719">gridfire::solver::QSENetworkSolver</a></li>
<li>parse()&#160;:&#160;<a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf">gridfire::io::NetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8">gridfire::io::SimpleReactionListFileParser</a></li>
<li>peName()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97">gridfire::reaction::Reaction</a></li>
<li>parse()&#160;:&#160;<a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf">gridfire::io::NetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8">gridfire::io::SimpleReactionListFileParser</a>, <a class="el" href="class_py_network_file_parser.html#afe09d1e5b07110e62cf4c6ec713cff54">PyNetworkFileParser</a></li>
<li>partitionByTimescale()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#ad4d29ee55f89384807616d1068797067">gridfire::MultiscalePartitioningEngineView</a></li>
<li>partitionNetwork()&#160;:&#160;<a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c">gridfire::MultiscalePartitioningEngineView</a></li>
<li>peName()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97">gridfire::reaction::Reaction</a></li>
<li>populateReactionIDMap()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567">gridfire::GraphEngine</a></li>
<li>populateSpeciesToIndexMap()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391">gridfire::GraphEngine</a></li>
<li>precomputeNetwork()&#160;:&#160;<a class="el" href="classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd">gridfire::GraphEngine</a></li>
<li>product_species()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c">gridfire::reaction::Reaction</a></li>
<li>products()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02">gridfire::reaction::Reaction</a></li>
<li>primeEngine()&#160;:&#160;<a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_defined_engine_view.html#a13033abd3b44904f98b58c93e22da460">gridfire::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a21c34f59c080a853fafa38a25175124e">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e">gridfire::GraphEngine</a>, <a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a05730ced13ac5331060ca011f0da6235">gridfire::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878">PyDynamicEngine</a></li>
<li>product_species()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c">gridfire::reaction::Reaction</a></li>
<li>products()&#160;:&#160;<a class="el" href="classgridfire_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02">gridfire::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02">gridfire::reaction::Reaction</a></li>
<li>PyDynamicNetworkSolverStrategy()&#160;:&#160;<a class="el" href="class_py_dynamic_network_solver_strategy.html#a4a3fce2a9853e7192354834bf2b36159">PyDynamicNetworkSolverStrategy</a></li>
</ul>
</div><!-- contents -->
</div><!-- doc-content -->