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docs(docs): asdded and cleaned up docs

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Emily Boudreaux
2025-07-24 11:10:45 -04:00
parent cc3708fda5
commit ba9b3e2392
808 changed files with 140326 additions and 9346 deletions
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docs/html/classgridfire_1_1_adaptive_engine_view.js
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@@ -3,30 +3,38 @@ var classgridfire_1_1_adaptive_engine_view =
[ "ReactionFlow", "structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html", "structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow" ],
[ "Config", "classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3", null ],
[ "LogManager", "classgridfire_1_1_adaptive_engine_view.html#a5eaf7c3a4e28cd3a4f34979b88a80103", null ],
[ "RescueSet", "classgridfire_1_1_adaptive_engine_view.html#a4ff60b5214ec0bdaf683feb6615573a5", null ],
[ "AdaptiveEngineView", "classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455", null ],
[ "calculateAllReactionFlows", "classgridfire_1_1_adaptive_engine_view.html#abdbaf4b87629efe43ac1255dad424c0c", null ],
[ "calculateMolarReactionFlow", "classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31", null ],
[ "calculateRHSAndEnergy", "classgridfire_1_1_adaptive_engine_view.html#a7b276b7210be588263395bdb0497fc6d", null ],
[ "calculateRHSAndEnergy", "classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5", null ],
[ "constructReactionIndexMap", "classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c", null ],
[ "constructSpeciesIndexMap", "classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d", null ],
[ "cullReactionsByFlow", "classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08", null ],
[ "finalizeActiveSet", "classgridfire_1_1_adaptive_engine_view.html#aa79fb382c98461b02a2c30668491e6c5", null ],
[ "findReachableSpecies", "classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b", null ],
[ "generateJacobianMatrix", "classgridfire_1_1_adaptive_engine_view.html#ac9aab6f60e80a9228b2b19b1b10449ef", null ],
[ "generateJacobianMatrix", "classgridfire_1_1_adaptive_engine_view.html#a03fc187d3d306b9058103b9522cbbaeb", null ],
[ "generateStoichiometryMatrix", "classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111", null ],
[ "getBaseEngine", "classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c", null ],
[ "getJacobianMatrixEntry", "classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58", null ],
[ "getNetworkReactions", "classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c", null ],
[ "getNetworkSpecies", "classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1", null ],
[ "getScreeningModel", "classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f", null ],
[ "getSpeciesTimescales", "classgridfire_1_1_adaptive_engine_view.html#a93b38d0fdc4647f6f7340172dae17872", null ],
[ "getSpeciesDestructionTimescales", "classgridfire_1_1_adaptive_engine_view.html#a522e78bce9ff062939572248d57f8cea", null ],
[ "getSpeciesIndex", "classgridfire_1_1_adaptive_engine_view.html#a9055feb245524a5a9549ace935f059ff", null ],
[ "getSpeciesTimescales", "classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9", null ],
[ "getStoichiometryMatrixEntry", "classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9", null ],
[ "isStale", "classgridfire_1_1_adaptive_engine_view.html#ad268c9942655e5c9605148fe07718e88", null ],
[ "mapCulledToFull", "classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1", null ],
[ "mapCulledToFullReactionIndex", "classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101", null ],
[ "mapCulledToFullSpeciesIndex", "classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8", null ],
[ "mapFullToCulled", "classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44", null ],
[ "mapNetInToMolarAbundanceVector", "classgridfire_1_1_adaptive_engine_view.html#a7d0237956bf3ec7230bc51d88e7f8019", null ],
[ "primeEngine", "classgridfire_1_1_adaptive_engine_view.html#a70005361262bc180d4417b608661e3c3", null ],
[ "rescueEdgeSpeciesDestructionChannel", "classgridfire_1_1_adaptive_engine_view.html#a823c665ba89452aa2b3d5422fa5d313f", null ],
[ "setNetworkReactions", "classgridfire_1_1_adaptive_engine_view.html#a7b3a6b3ab0a52f0f84d2b142e74ea672", null ],
[ "setScreeningModel", "classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b", null ],
[ "update", "classgridfire_1_1_adaptive_engine_view.html#a7d61e73f5158f1574cda3edc90c51f7e", null ],
[ "update", "classgridfire_1_1_adaptive_engine_view.html#a2a7ecf985a326b4bea43e00cf9ee43dd", null ],
[ "validateState", "classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40", null ],
[ "m_activeReactions", "classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800", null ],
[ "m_activeSpecies", "classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940", null ],