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docs(docs): asdded and cleaned up docs

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Emily Boudreaux
2025-07-24 11:10:45 -04:00
parent cc3708fda5
commit ba9b3e2392
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@@ -102,62 +102,68 @@ $(function(){initNavTree('classes.html',''); initResizable(true); });
<div class="headertitle"><div class="title">Class Index</div></div>
</div><!--header-->
<div class="contents">
<div class="qindex"><a class="qindex" href="#letter_A">A</a>&#160;|&#160;<a class="qindex" href="#letter_B">B</a>&#160;|&#160;<a class="qindex" href="#letter_C">C</a>&#160;|&#160;<a class="qindex" href="#letter_D">D</a>&#160;|&#160;<a class="qindex" href="#letter_E">E</a>&#160;|&#160;<a class="qindex" href="#letter_F">F</a>&#160;|&#160;<a class="qindex" href="#letter_G">G</a>&#160;|&#160;<a class="qindex" href="#letter_H">H</a>&#160;|&#160;<a class="qindex" href="#letter_J">J</a>&#160;|&#160;<a class="qindex" href="#letter_L">L</a>&#160;|&#160;<a class="qindex" href="#letter_M">M</a>&#160;|&#160;<a class="qindex" href="#letter_N">N</a>&#160;|&#160;<a class="qindex" href="#letter_O">O</a>&#160;|&#160;<a class="qindex" href="#letter_P">P</a>&#160;|&#160;<a class="qindex" href="#letter_Q">Q</a>&#160;|&#160;<a class="qindex" href="#letter_R">R</a>&#160;|&#160;<a class="qindex" href="#letter_S">S</a>&#160;|&#160;<a class="qindex" href="#letter_T">T</a>&#160;|&#160;<a class="qindex" href="#letter_W">W</a></div>
<div class="qindex"><a class="qindex" href="#letter_A">A</a>&#160;|&#160;<a class="qindex" href="#letter_B">B</a>&#160;|&#160;<a class="qindex" href="#letter_C">C</a>&#160;|&#160;<a class="qindex" href="#letter_D">D</a>&#160;|&#160;<a class="qindex" href="#letter_E">E</a>&#160;|&#160;<a class="qindex" href="#letter_F">F</a>&#160;|&#160;<a class="qindex" href="#letter_G">G</a>&#160;|&#160;<a class="qindex" href="#letter_H">H</a>&#160;|&#160;<a class="qindex" href="#letter_I">I</a>&#160;|&#160;<a class="qindex" href="#letter_J">J</a>&#160;|&#160;<a class="qindex" href="#letter_L">L</a>&#160;|&#160;<a class="qindex" href="#letter_M">M</a>&#160;|&#160;<a class="qindex" href="#letter_N">N</a>&#160;|&#160;<a class="qindex" href="#letter_O">O</a>&#160;|&#160;<a class="qindex" href="#letter_P">P</a>&#160;|&#160;<a class="qindex" href="#letter_Q">Q</a>&#160;|&#160;<a class="qindex" href="#letter_R">R</a>&#160;|&#160;<a class="qindex" href="#letter_S">S</a>&#160;|&#160;<a class="qindex" href="#letter_T">T</a>&#160;|&#160;<a class="qindex" href="#letter_U">U</a>&#160;|&#160;<a class="qindex" href="#letter_W">W</a></div>
<div class="classindex">
<dl class="classindex even">
<dt class="alphachar"><a id="letter_A" name="letter_A">A</a></dt>
<dd><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">AdaptiveEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html">Approx8Net</a> (<a class="el" href="namespacegridfire_1_1approx8.html">gridfire::approx8</a>)</dd><dd><a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html">Approx8Network</a> (<a class="el" href="namespacegridfire_1_1approx8.html">gridfire::approx8</a>)</dd></dl>
<dd><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">AdaptiveEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1approx8_1_1_approx8_net.html">Approx8Net</a> (<a class="el" href="namespacegridfire_1_1approx8.html">gridfire::approx8</a>)</dd><dd><a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html">Approx8Network</a> (<a class="el" href="namespacegridfire_1_1approx8.html">gridfire::approx8</a>)</dd><dd><a class="el" href="classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html">GraphEngine::AtomicReverseRate</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a id="letter_B" name="letter_B">B</a></dt>
<dd><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">BareScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a id="letter_C" name="letter_C">C</a></dt>
<dd><a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html">GraphEngine::constants</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dd><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html">MultiscalePartitioningEngineView::CacheStats</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html">CompositePartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html">GraphEngine::constants</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a id="letter_D" name="letter_D">D</a></dt>
<dd><a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html">DirectNetworkSolver</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html">dynamicQSESpeciesIndices</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd></dl>
<dd><a class="el" href="classgridfire_1_1_defined_engine_view.html">DefinedEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html">DirectNetworkSolver</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a id="letter_E" name="letter_E">E</a></dt>
<dd><a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html">QSENetworkSolver::EigenFunctor</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="classgridfire_1_1_engine.html">Engine</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1_engine_view.html">EngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dd><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html">MultiscalePartitioningEngineView::EigenFunctor</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1_engine.html">Engine</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_engine_error.html">EngineError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1expectations_1_1_engine_error.html">EngineError</a> (<a class="el" href="namespacegridfire_1_1expectations.html">gridfire::expectations</a>)</dd><dd><a class="el" href="structgridfire_1_1expectations_1_1_engine_index_error.html">EngineIndexError</a> (<a class="el" href="namespacegridfire_1_1expectations.html">gridfire::expectations</a>)</dd><dd><a class="el" href="classgridfire_1_1_engine_view.html">EngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a id="letter_F" name="letter_F">F</a></dt>
<dd><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">FileDefinedEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dd><a class="el" href="classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html">FailedToPartitionEngineError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">FileDefinedEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a id="letter_G" name="letter_G">G</a></dt>
<dd><a class="el" href="classgridfire_1_1_graph_engine.html">GraphEngine</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dd><a class="el" href="classgridfire_1_1_graph_engine.html">GraphEngine</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html">GroundStatePartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a id="letter_H" name="letter_H">H</a></dt>
<dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html">hash&lt; gridfire::reaction::LogicalReactionSet &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html">hash&lt; gridfire::reaction::Reaction &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html">hash&lt; gridfire::reaction::ReactionSet &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd></dl>
<dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html">hash&lt; gridfire::QSECacheKey &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html">hash&lt; gridfire::reaction::LogicalReactionSet &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html">hash&lt; gridfire::reaction::Reaction &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html">hash&lt; gridfire::reaction::ReactionSet &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a id="letter_J" name="letter_J">J</a></dt>
<dd><a class="el" href="structgridfire_1_1approx8_1_1_jacobian.html">Jacobian</a> (<a class="el" href="namespacegridfire_1_1approx8.html">gridfire::approx8</a>)</dd><dd><a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html">DirectNetworkSolver::JacobianFunctor</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_jacobian_functor.html">QSENetworkSolver::JacobianFunctor</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd></dl>
<dt class="alphachar"><a id="letter_I" name="letter_I">I</a></dt>
<dd><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html">RauscherThielemannPartitionFunction::IdentifiedIsotope</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html">RauscherThielemannPartitionFunction::InterpolationPoints</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html">RauscherThielemannPartitionFunction::IsotopeData</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a id="letter_J" name="letter_J">J</a></dt>
<dd><a class="el" href="structgridfire_1_1approx8_1_1_jacobian.html">Jacobian</a> (<a class="el" href="namespacegridfire_1_1approx8.html">gridfire::approx8</a>)</dd><dd><a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html">DirectNetworkSolver::JacobianFunctor</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a id="letter_L" name="letter_L">L</a></dt>
<dd><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html">LogicalReaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a id="letter_M" name="letter_M">M</a></dt>
<dd><a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html">MESANetworkFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a id="letter_N" name="letter_N">N</a></dt>
<dd><a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_net_out.html">NetOut</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1_network.html">Network</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html">NetworkFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">NetworkSolverStrategy</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd></dl>
<dt class="alphachar"><a id="letter_M" name="letter_M">M</a></dt>
<dd><a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html">MESANetworkFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">MultiscalePartitioningEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a id="letter_N" name="letter_N">N</a></dt>
<dd><a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_net_out.html">NetOut</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1_network.html">Network</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html">NetworkFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1_network_priming_engine_view.html">NetworkPrimingEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html">NetworkResizedError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">NetworkSolverStrategy</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a id="letter_O" name="letter_O">O</a></dt>
<dd><a class="el" href="structgridfire_1_1approx8_1_1_o_d_e.html">ODE</a> (<a class="el" href="namespacegridfire_1_1approx8.html">gridfire::approx8</a>)</dd></dl>
<dl class="classindex odd">
<dl class="classindex even">
<dt class="alphachar"><a id="letter_P" name="letter_P">P</a></dt>
<dd><a class="el" href="structgridfire_1_1io_1_1_parsed_network_data.html">ParsedNetworkData</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html">GraphEngine::PrecomputedReaction</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dl class="classindex even">
<dd><a class="el" href="classgridfire_1_1partition_1_1_partition_function.html">PartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html">GraphEngine::PrecomputedReaction</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_priming_report.html">PrimingReport</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></dd><dd><a class="el" href="class_py_dynamic_engine_view.html">PyDynamicEngineView</a></dd><dd><a class="el" href="class_py_dynamic_network_solver_strategy.html">PyDynamicNetworkSolverStrategy</a></dd><dd><a class="el" href="class_py_engine.html">PyEngine</a></dd><dd><a class="el" href="class_py_engine_view.html">PyEngineView</a></dd><dd><a class="el" href="class_py_network_file_parser.html">PyNetworkFileParser</a></dd><dd><a class="el" href="class_py_partition_function.html">PyPartitionFunction</a></dd><dd><a class="el" href="class_py_screening.html">PyScreening</a></dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a id="letter_Q" name="letter_Q">Q</a></dt>
<dd><a class="el" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html">QSENetworkSolver</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a id="letter_R" name="letter_R">R</a></dt>
<dd><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html">AdaptiveEngineView::ReactionFlow</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html">ReactionRecord</a> (<a class="el" href="namespacegridfire_1_1reaclib.html">gridfire::reaclib</a>)</dd><dd><a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html">DirectNetworkSolver::RHSFunctor</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html">QSENetworkSolver::RHSFunctor</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd></dl>
<dd><a class="el" href="structgridfire_1_1_q_s_e_cache_config.html">QSECacheConfig</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_q_s_e_cache_key.html">QSECacheKey</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">MultiscalePartitioningEngineView::QSEGroup</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a id="letter_S" name="letter_S">S</a></dt>
<dd><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">ScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd><dd><a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html">SimpleReactionListFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dt class="alphachar"><a id="letter_R" name="letter_R">R</a></dt>
<dd><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html">RauscherThielemannPartitionDataRecord</a> (<a class="el" href="namespacegridfire_1_1partition_1_1record.html">gridfire::partition::record</a>)</dd><dd><a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html">RauscherThielemannPartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="classgridfire_1_1_reaction.html">Reaction</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html">AdaptiveEngineView::ReactionFlow</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html">ReactionRecord</a> (<a class="el" href="namespacegridfire_1_1reaclib.html">gridfire::reaclib</a>)</dd><dd><a class="el" href="struct_r_h_s_functor.html">RHSFunctor</a></dd><dd><a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html">DirectNetworkSolver::RHSManager</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a id="letter_S" name="letter_S">S</a></dt>
<dd><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">ScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd><dd><a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html">SimpleReactionListFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_error.html">StaleEngineError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">StaleEngineError</a> (<a class="el" href="namespacegridfire_1_1expectations.html">gridfire::expectations</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html">StaleEngineTrigger</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html">StaleEngineTrigger::state</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a id="letter_T" name="letter_T">T</a></dt>
<dd><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html">TemplatedReactionSet</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a id="letter_U" name="letter_U">U</a></dt>
<dd><a class="el" href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html">UnableToSetNetworkReactionsError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a id="letter_W" name="letter_W">W</a></dt>
<dd><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">WeakScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd></dl>