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docs(docs): rebuilt

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Emily Boudreaux
2025-11-05 18:38:07 -05:00
parent 18d289da7e
commit ba306523d6
202 changed files with 11748 additions and 3895 deletions
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docs/html/classes.html
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@@ -112,7 +112,7 @@ $(function(){initNavTree('classes.html',''); initResizable(true); });
<dd><a class="el" href="classgridfire_1_1exceptions_1_1_bad_collection_error.html">BadCollectionError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">BareScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html">BoundsErrorInfo</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a id="letter_C" name="letter_C">C</a></dt>
<dd><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html">MultiscalePartitioningEngineView::CacheStats</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1utils_1_1_column.html">Column</a> (<a class="el" href="namespacegridfire_1_1utils.html">gridfire::utils</a>)</dd><dd><a class="el" href="classgridfire_1_1utils_1_1_column_base.html">ColumnBase</a> (<a class="el" href="namespacegridfire_1_1utils.html">gridfire::utils</a>)</dd><dd><a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html">CompositePartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html">GraphEngine::constants</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">WeakReaction::constants</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html">ConvergenceFailureTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">gridfire::trigger::solver::CVODE</a>)</dd><dd><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">CVODESolverStrategy::CVODEUserData</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd></dl>
<dd><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html">MultiscalePartitioningEngineView::CacheStats</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_c_n_o_chain_policy.html">CNOChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1utils_1_1_column.html">Column</a> (<a class="el" href="namespacegridfire_1_1utils.html">gridfire::utils</a>)</dd><dd><a class="el" href="classgridfire_1_1utils_1_1_column_base.html">ColumnBase</a> (<a class="el" href="namespacegridfire_1_1utils.html">gridfire::utils</a>)</dd><dd><a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html">CompositePartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1_graph_engine_1_1constants.html">GraphEngine::constants</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html">WeakReaction::constants</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html">ConvergenceFailureTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">gridfire::trigger::solver::CVODE</a>)</dd><dd><a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">CVODESolverStrategy</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html">CVODESolverStrategy::CVODEUserData</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a id="letter_D" name="letter_D">D</a></dt>
<dd><a class="el" href="classgridfire_1_1_defined_engine_view.html">DefinedEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
@@ -127,7 +127,7 @@ $(function(){initNavTree('classes.html',''); initResizable(true); });
<dd><a class="el" href="classgridfire_1_1_graph_engine.html">GraphEngine</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html">GroundStatePartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a id="letter_H" name="letter_H">H</a></dt>
<dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html">hash&lt; gridfire::QSECacheKey &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.html">hash&lt; gridfire::rates::weak::TableAxes &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html">hash&lt; gridfire::reaction::Reaction &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html">hash&lt; gridfire::reaction::ReactionSet &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_hashing_error.html">HashingError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd></dl>
<dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html">hash&lt; gridfire::QSECacheKey &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.html">hash&lt; gridfire::rates::weak::TableAxes &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html">hash&lt; gridfire::reaction::Reaction &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html">hash&lt; gridfire::reaction::ReactionSet &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_hashing_error.html">HashingError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_chain_policy.html">HotCNOChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a id="letter_I" name="letter_I">I</a></dt>
<dd><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html">RauscherThielemannPartitionFunction::IdentifiedIsotope</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html">IntermediateScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html">InterpolationError</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html">RauscherThielemannPartitionFunction::InterpolationPoints</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html">RauscherThielemannPartitionFunction::IsotopeData</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html">IsotopeGrid</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd></dl>
@@ -136,25 +136,25 @@ $(function(){initNavTree('classes.html',''); initResizable(true); });
<dd><a class="el" href="structgridfire_1_1approx8_1_1_jacobian.html">Jacobian</a> (<a class="el" href="namespacegridfire_1_1approx8.html">gridfire::approx8</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_jacobian_error.html">JacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a id="letter_L" name="letter_L">L</a></dt>
<dd><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">LogicalReaclibReaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1_logical_trigger.html">LogicalTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd></dl>
<dd><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">LogicalReaclibReaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1_logical_trigger.html">LogicalTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_low_mass_main_sequence_policy.html">LowMassMainSequencePolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_low_mass_main_sequence_reaction_chain_policy.html">LowMassMainSequenceReactionChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a id="letter_M" name="letter_M">M</a></dt>
<dd><a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html">MESANetworkFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">MultiscalePartitioningEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dd><a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html">MESANetworkFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_missing_base_reaction_error.html">MissingBaseReactionError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_missing_key_reaction_error.html">MissingKeyReactionError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_missing_seed_species_error.html">MissingSeedSpeciesError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_multi_reaction_chain_policy.html">MultiReactionChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1_multiscale_partitioning_engine_view.html">MultiscalePartitioningEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a id="letter_N" name="letter_N">N</a></dt>
<dd><a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_net_out.html">NetOut</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1_network.html">Network</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html">NetworkFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1_network_priming_engine_view.html">NetworkPrimingEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html">NetworkResizedError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">NetworkSolverStrategy</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">NotTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd></dl>
<dd><a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_net_out.html">NetOut</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1_network.html">Network</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html">NetworkFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_network_policy.html">NetworkPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1_network_priming_engine_view.html">NetworkPrimingEngineView</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html">NetworkResizedError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">NetworkSolverStrategy</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">NotTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a id="letter_O" name="letter_O">O</a></dt>
<dd><a class="el" href="structgridfire_1_1approx8_1_1_o_d_e.html">ODE</a> (<a class="el" href="namespacegridfire_1_1approx8.html">gridfire::approx8</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">OffDiagonalTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">gridfire::trigger::solver::CVODE</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">OrTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a id="letter_P" name="letter_P">P</a></dt>
<dd><a class="el" href="classgridfire_1_1partition_1_1_partition_function.html">PartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html">GraphEngine::PrecomputedReaction</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_priming_report.html">PrimingReport</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></dd><dd><a class="el" href="class_py_dynamic_engine_view.html">PyDynamicEngineView</a></dd><dd><a class="el" href="class_py_dynamic_network_solver_strategy.html">PyDynamicNetworkSolverStrategy</a></dd><dd><a class="el" href="class_py_engine.html">PyEngine</a></dd><dd><a class="el" href="class_py_engine_view.html">PyEngineView</a></dd><dd><a class="el" href="class_py_network_file_parser.html">PyNetworkFileParser</a></dd><dd><a class="el" href="class_py_partition_function.html">PyPartitionFunction</a></dd><dd><a class="el" href="class_py_screening.html">PyScreening</a></dd><dd><a class="el" href="class_py_solver_context_base.html">PySolverContextBase</a></dd></dl>
<dd><a class="el" href="classgridfire_1_1partition_1_1_partition_function.html">PartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_policy_error.html">PolicyError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html">GraphEngine::PrecomputedReaction</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_priming_report.html">PrimingReport</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_proton_proton_chain_policy.html">ProtonProtonChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></dd><dd><a class="el" href="class_py_dynamic_engine_view.html">PyDynamicEngineView</a></dd><dd><a class="el" href="class_py_dynamic_network_solver_strategy.html">PyDynamicNetworkSolverStrategy</a></dd><dd><a class="el" href="class_py_engine.html">PyEngine</a></dd><dd><a class="el" href="class_py_engine_view.html">PyEngineView</a></dd><dd><a class="el" href="structgridfire_1_1io_1_1gen_1_1_py_function_def.html">PyFunctionDef</a> (<a class="el" href="namespacegridfire_1_1io_1_1gen.html">gridfire::io::gen</a>)</dd><dd><a class="el" href="class_py_network_file_parser.html">PyNetworkFileParser</a></dd><dd><a class="el" href="class_py_partition_function.html">PyPartitionFunction</a></dd><dd><a class="el" href="class_py_screening.html">PyScreening</a></dd><dd><a class="el" href="class_py_solver_context_base.html">PySolverContextBase</a></dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a id="letter_Q" name="letter_Q">Q</a></dt>
<dd><a class="el" href="structgridfire_1_1_q_s_e_cache_config.html">QSECacheConfig</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_q_s_e_cache_key.html">QSECacheKey</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">MultiscalePartitioningEngineView::QSEGroup</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dl class="classindex even">
<dt class="alphachar"><a id="letter_R" name="letter_R">R</a></dt>
<dd><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">RateDataRow</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html">RauscherThielemannPartitionDataRecord</a> (<a class="el" href="namespacegridfire_1_1partition_1_1record.html">gridfire::partition::record</a>)</dd><dd><a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html">RauscherThielemannPartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1_reaction.html">Reaction</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html">AdaptiveEngineView::ReactionFlow</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html">ReactionRecord</a> (<a class="el" href="namespacegridfire_1_1reaclib.html">gridfire::reaclib</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1_reaction_set.html">ReactionSet</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dd><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">RateDataRow</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html">RauscherThielemannPartitionDataRecord</a> (<a class="el" href="namespacegridfire_1_1partition_1_1record.html">gridfire::partition::record</a>)</dd><dd><a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html">RauscherThielemannPartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1_reaction.html">Reaction</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_reaction_chain_policy.html">ReactionChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html">AdaptiveEngineView::ReactionFlow</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html">ReactionRecord</a> (<a class="el" href="namespacegridfire_1_1reaclib.html">gridfire::reaclib</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1_reaction_set.html">ReactionSet</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>
<dl class="classindex odd">
<dt class="alphachar"><a id="letter_S" name="letter_S">S</a></dt>
<dd><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">ScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd><dd><a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html">SimpleReactionListFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">SimulationTimeTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">gridfire::trigger::solver::CVODE</a>)</dd><dd><a class="el" href="classgridfire_1_1solver_1_1_solver_context_base.html">SolverContextBase</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="class_solver_plugin_interface.html">SolverPluginInterface</a></dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_error.html">StaleEngineError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">StaleEngineError</a> (<a class="el" href="namespacegridfire_1_1expectations.html">gridfire::expectations</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_stale_engine_trigger.html">StaleEngineTrigger</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_stale_jacobian_error.html">StaleJacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html">StaleEngineTrigger::state</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1_step_derivatives.html">StepDerivatives</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd></dl>