tboudreaux/GridFire
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

docs(docs): added more callback docs

Browse Source
This commit is contained in:
Emily Boudreaux
2025-07-31 15:41:27 -04:00
parent 24049b2658
commit b0c1daada4
30 changed files with 371 additions and 329 deletions
Download Patch File Download Diff File Expand all files Collapse all files

8
docs/html/search/all_0.js
View File

@@ -1,7 +1,7 @@
var searchData=
[
['1_201_20pypi_20release_0',['1.1 PyPI Release',['../md_docs_2static_2usage.html#autotoc_md60',1,'']]],
['1_202_20development_20from_20source_1',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md61',1,'']]],
['1_20installation_2',['1. Installation',['../md_docs_2static_2usage.html#autotoc_md59',1,'']]],
['1_20pypi_20release_3',['1.1 PyPI Release',['../md_docs_2static_2usage.html#autotoc_md60',1,'']]]
['1_201_20pypi_20release_0',['1.1 PyPI Release',['../md_docs_2static_2usage.html#autotoc_md61',1,'']]],
['1_202_20development_20from_20source_1',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md62',1,'']]],
['1_20installation_2',['1. Installation',['../md_docs_2static_2usage.html#autotoc_md60',1,'']]],
['1_20pypi_20release_3',['1.1 PyPI Release',['../md_docs_2static_2usage.html#autotoc_md61',1,'']]]
];

4
docs/html/search/all_1.js
View File

@@ -1,5 +1,5 @@
var searchData=
[
['2_20development_20from_20source_0',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md61',1,'']]],
['2_20why_20these_20engines_20and_20views_1',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md63',1,'']]]
['2_20development_20from_20source_0',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md62',1,'']]],
['2_20why_20these_20engines_20and_20views_1',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md64',1,'']]]
];

2
docs/html/search/all_10.js
View File

@@ -1,5 +1,5 @@
var searchData=
[
['kb_0',['kB',['../structgridfire_1_1_graph_engine_1_1constants.html#a29c8ae2b5c1d5fecd25c4fde2b623f7f',1,'gridfire::GraphEngine::constants']]],
['known_20good_20platforms_1',['Currently known good platforms',['../index.html#autotoc_md10',1,'']]]
['known_20good_20platforms_1',['Currently, known good platforms',['../index.html#autotoc_md10',1,'']]]
];

2
docs/html/search/all_13.js
View File

@@ -22,7 +22,7 @@ var searchData=
['networkprimingengineview_19',['NetworkPrimingEngineView',['../classgridfire_1_1_network_priming_engine_view.html',1,'gridfire::NetworkPrimingEngineView'],['../classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177',1,'gridfire::NetworkPrimingEngineView::NetworkPrimingEngineView(const std::string &primingSymbol, DynamicEngine &baseEngine)'],['../classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6',1,'gridfire::NetworkPrimingEngineView::NetworkPrimingEngineView(const fourdst::atomic::Species &primingSpecies, DynamicEngine &baseEngine)']]],
['networkprimingengineview_20example_20',['NetworkPrimingEngineView Example',['../engine_8h.html#NetworkPrimingEngineViewExample',1,'']]],
['networkresizederror_21',['NetworkResizedError',['../classgridfire_1_1exceptions_1_1_network_resized_error.html',1,'gridfire::exceptions::NetworkResizedError'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a80c0adb088e8083309591d24051b056b',1,'gridfire::exceptions::NetworkResizedError::NetworkResizedError()']]],
['networks_22',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md67',1,'']]],
['networks_22',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md68',1,'']]],
['networksolverstrategy_23',['NetworkSolverStrategy',['../classgridfire_1_1solver_1_1_network_solver_strategy.html',1,'gridfire::solver::NetworkSolverStrategy< EngineT >'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505',1,'gridfire::solver::NetworkSolverStrategy::NetworkSolverStrategy()']]],
['networksolverstrategy_20lt_20enginet_20gt_20_3a_24',['NetworkSolverStrategy<EngineT>:',['../index.html#autotoc_md37',1,'']]],
['networksolverstrategy_3c_20dynamicengine_20_3e_25',['NetworkSolverStrategy< DynamicEngine >',['../classgridfire_1_1solver_1_1_network_solver_strategy.html',1,'gridfire::solver']]],

10
docs/html/search/all_15.js
View File

@@ -20,7 +20,7 @@ var searchData=
['pename_17',['peName',['../classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97',1,'gridfire::reaction::Reaction::peName()'],['../classgridfire_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97',1,'gridfire::Reaction::peName()']]],
['philosophy_20and_20workflow_18',['Design Philosophy and Workflow',['../index.html#autotoc_md1',1,'']]],
['platforms_19',['Dependency Installation on Common Platforms',['../index.html#autotoc_md22',1,'']]],
['platforms_20',['Currently known good platforms',['../index.html#autotoc_md10',1,'']]],
['platforms_20',['Currently, known good platforms',['../index.html#autotoc_md10',1,'']]],
['populatereactionidmap_21',['populateReactionIDMap',['../classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567',1,'gridfire::GraphEngine']]],
['populatespeciestoindexmap_22',['populateSpeciesToIndexMap',['../classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391',1,'gridfire::GraphEngine']]],
['pp_5frate_23',['pp_rate',['../namespacegridfire_1_1approx8.html#a16739298c01e56967ce784a9a957439f',1,'gridfire::approx8']]],
@@ -39,7 +39,7 @@ var searchData=
['product_5fspecies_36',['product_species',['../classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c',1,'gridfire::reaction::Reaction::product_species()'],['../classgridfire_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c',1,'gridfire::Reaction::product_species()']]],
['products_37',['products',['../classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02',1,'gridfire::reaction::Reaction::products()'],['../classgridfire_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02',1,'gridfire::Reaction::products()']]],
['products_5fstr_38',['products_str',['../structgridfire_1_1reaclib_1_1_reaction_record.html#af1b1d3b0308d965ef0697b247fcf9082',1,'gridfire::reaclib::ReactionRecord']]],
['projects_39',['Related Projects',['../index.html#autotoc_md56',1,'']]],
['projects_39',['Related Projects',['../index.html#autotoc_md57',1,'']]],
['py_5fengine_2ecpp_40',['py_engine.cpp',['../py__engine_8cpp.html',1,'']]],
['py_5fengine_2eh_41',['py_engine.h',['../py__engine_8h.html',1,'']]],
['py_5fio_2ecpp_42',['py_io.cpp',['../py__io_8cpp.html',1,'']]],
@@ -59,10 +59,10 @@ var searchData=
['pynetworkfileparser_56',['PyNetworkFileParser',['../class_py_network_file_parser.html',1,'']]],
['pypartitionfunction_57',['PyPartitionFunction',['../class_py_partition_function.html',1,'']]],
['pypi_58',['pypi',['../index.html#autotoc_md5',1,'']]],
['pypi_20release_59',['1.1 PyPI Release',['../md_docs_2static_2usage.html#autotoc_md60',1,'']]],
['pypi_20release_59',['1.1 PyPI Release',['../md_docs_2static_2usage.html#autotoc_md61',1,'']]],
['pyscreening_60',['PyScreening',['../class_py_screening.html',1,'']]],
['python_61',['Python',['../index.html#autotoc_md53',1,'']]],
['python_20callbacks_62',['Python callbacks',['../index.html#autotoc_md55',1,'']]],
['python_61',['Python',['../index.html#autotoc_md54',1,'']]],
['python_20callbacks_62',['Python callbacks',['../index.html#autotoc_md56',1,'']]],
['python_20extensibility_63',['Python Extensibility',['../index.html#autotoc_md44',1,'']]],
['python_20installation_64',['Python installation',['../index.html#autotoc_md4',1,'']]],
['python_20usage_20guide_65',['GridFire Python Usage Guide',['../md_docs_2static_2usage.html',1,'']]]

6
docs/html/search/all_17.js
View File

@@ -21,7 +21,7 @@ var searchData=
['reactants_18',['reactants',['../classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b',1,'gridfire::reaction::Reaction::reactants()'],['../classgridfire_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b',1,'gridfire::Reaction::reactants()']]],
['reactants_5fstr_19',['reactants_str',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a67afc513db8dbcc43d79733e22ca8d39',1,'gridfire::reaclib::ReactionRecord']]],
['reaction_20',['Reaction',['../classgridfire_1_1_reaction.html',1,'gridfire::Reaction'],['../classgridfire_1_1reaction_1_1_reaction.html',1,'gridfire::reaction::Reaction'],['../classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c',1,'gridfire::reaction::Reaction::Reaction()'],['../classgridfire_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c',1,'gridfire::Reaction::Reaction()']]],
['reaction_20networks_21',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md67',1,'']]],
['reaction_20networks_21',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md68',1,'']]],
['reaction_2ecpp_22',['reaction.cpp',['../reaction_8cpp.html',1,'']]],
['reaction_2eh_23',['reaction.h',['../reaction_8h.html',1,'']]],
['reaction_5findex_24',['reaction_index',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497',1,'gridfire::GraphEngine::PrecomputedReaction']]],
@@ -49,8 +49,8 @@ var searchData=
['register_5fsolver_5fbindings_46',['register_solver_bindings',['../solver_2bindings_8cpp.html#a722d28831d82cd075081fcf4b403479d',1,'register_solver_bindings(const py::module &m): bindings.cpp'],['../solver_2bindings_8h.html#a7ff40d9e08fcb5028e914045447d46d3',1,'register_solver_bindings(const pybind11::module &m): bindings.h']]],
['register_5ftype_5fbindings_47',['register_type_bindings',['../types_2bindings_8cpp.html#a37d2e0b6a2605d063eec5e2a64e9bcc5',1,'register_type_bindings(pybind11::module &m): bindings.cpp'],['../types_2bindings_8h.html#a37d2e0b6a2605d063eec5e2a64e9bcc5',1,'register_type_bindings(pybind11::module &m): bindings.cpp']]],
['register_5futils_5fbindings_48',['register_utils_bindings',['../utils_2bindings_8cpp.html#a7af842f50ca4a721518e716d0229697c',1,'register_utils_bindings(py::module &m): bindings.cpp'],['../utils_2bindings_8h.html#a9eefca377142320755a869fafc6311c7',1,'register_utils_bindings(pybind11::module &m): bindings.h']]],
['related_20projects_49',['Related Projects',['../index.html#autotoc_md56',1,'']]],
['release_50',['1.1 PyPI Release',['../md_docs_2static_2usage.html#autotoc_md60',1,'']]],
['related_20projects_49',['Related Projects',['../index.html#autotoc_md57',1,'']]],
['release_50',['1.1 PyPI Release',['../md_docs_2static_2usage.html#autotoc_md61',1,'']]],
['remove_5freaction_51',['remove_reaction',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a89c4c5af12aef7fbfc24316c88237e22',1,'gridfire::reaction::TemplatedReactionSet']]],
['reporting_2eh_52',['reporting.h',['../reporting_8h.html',1,'']]],
['reproducibility_53',['Reproducibility',['../index.html#autotoc_md17',1,'']]],

6
docs/html/search/all_18.js
View File

@@ -38,7 +38,7 @@ var searchData=
['solver_2ecpp_35',['solver.cpp',['../solver_8cpp.html',1,'']]],
['solver_2eh_36',['solver.h',['../solver_8h.html',1,'']]],
['solvercontextbase_37',['SolverContextBase',['../structgridfire_1_1solver_1_1_solver_context_base.html',1,'gridfire::solver']]],
['source_38',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md61',1,'']]],
['source_38',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md62',1,'']]],
['source_39',['source',['../index.html#autotoc_md6',1,'']]],
['source_20for_20developers_40',['source for developers',['../index.html#autotoc_md7',1,'']]],
['sourcelabel_41',['sourceLabel',['../classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0',1,'gridfire::reaction::Reaction::sourceLabel()'],['../classgridfire_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0',1,'gridfire::Reaction::sourceLabel()']]],
@@ -53,8 +53,8 @@ var searchData=
['state_50',['state',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html',1,'gridfire::exceptions::StaleEngineTrigger::state'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#adab4b53a94b935f89f799bd5a67847a2',1,'gridfire::solver::DirectNetworkSolver::TimestepContext::state']]],
['status_51',['status',['../structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d',1,'gridfire::PrimingReport']]],
['std_52',['std',['../namespacestd.html',1,'']]],
['step_20by_20step_20example_53',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md65',1,'']]],
['step_20example_54',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md65',1,'']]],
['step_20by_20step_20example_53',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md66',1,'']]],
['step_20example_54',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md66',1,'']]],
['stepderivatives_55',['StepDerivatives',['../structgridfire_1_1_step_derivatives.html',1,'gridfire']]],
['stoichiometric_5fcoefficients_56',['stoichiometric_coefficients',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c',1,'gridfire::GraphEngine::PrecomputedReaction']]],
['stoichiometry_57',['stoichiometry',['../classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac',1,'gridfire::reaction::Reaction::stoichiometry(const fourdst::atomic::Species &species) const'],['../classgridfire_1_1reaction_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3',1,'gridfire::reaction::Reaction::stoichiometry() const'],['../classgridfire_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac',1,'gridfire::Reaction::stoichiometry(const fourdst::atomic::Species &species) const'],['../classgridfire_1_1_reaction.html#ad359c06d7196c1a7a955a7b66a51dbe3',1,'gridfire::Reaction::stoichiometry() const']]],

4
docs/html/search/all_19.js
View File

@@ -9,10 +9,10 @@ var searchData=
['templatedreactionset_6',['TemplatedReactionSet',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html',1,'gridfire::reaction::TemplatedReactionSet< ReactionT >'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a54c8cd7c34564277fe28eefc623f666e',1,'gridfire::reaction::TemplatedReactionSet::TemplatedReactionSet(std::vector< ReactionT > reactions)'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a9def4c9a3a7a03625b7c467fe7440428',1,'gridfire::reaction::TemplatedReactionSet::TemplatedReactionSet()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ada1d1880be53b81a9ed7b966fd6ade5a',1,'gridfire::reaction::TemplatedReactionSet::TemplatedReactionSet(const TemplatedReactionSet< ReactionT > &other)']]],
['templatedreactionset_3c_20logicalreaction_20_3e_7',['TemplatedReactionSet< LogicalReaction >',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html',1,'gridfire::reaction']]],
['templatedreactionset_3c_20reaction_20_3e_8',['TemplatedReactionSet< Reaction >',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html',1,'gridfire::reaction']]],
['the_20basics_9',['5. Beyond the Basics',['../md_docs_2static_2usage.html#autotoc_md69',1,'']]],
['the_20basics_9',['5. Beyond the Basics',['../md_docs_2static_2usage.html#autotoc_md70',1,'']]],
['the_20c_20library_10',['Building the C++ Library',['../index.html#autotoc_md23',1,'']]],
['the_20library_11',['Installing the Library',['../index.html#autotoc_md25',1,'']]],
['these_20engines_20and_20views_12',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md63',1,'']]],
['these_20engines_20and_20views_12',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md64',1,'']]],
['thirdorder_13',['ThirdOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a3fc719e07f9f63e7f11a3d4fb74b476f',1,'gridfire']]],
['timestepcallback_14',['TimestepCallback',['../classgridfire_1_1solver_1_1_direct_network_solver.html#a171bd0c8c292da79ed41f6653fdd47df',1,'gridfire::solver::DirectNetworkSolver']]],
['timestepcontext_15',['TimestepContext',['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html',1,'gridfire::solver::DirectNetworkSolver::TimestepContext'],['../structgridfire_1_1solver_1_1_direct_network_solver_1_1_timestep_context.html#aea1385260976dff133404db5b453ba98',1,'gridfire::solver::DirectNetworkSolver::TimestepContext::TimestepContext()']]],

4
docs/html/search/all_1b.js
View File

@@ -10,7 +10,7 @@ var searchData=
['vector_5ftype_7',['vector_type',['../namespacegridfire_1_1approx8.html#aa04f907d4ef6a1b6b2a9a28d4bb53882',1,'gridfire::approx8']]],
['versions_8',['Minimum compiler versions',['../index.html#autotoc_md26',1,'']]],
['view_9',['Adaptive Network View',['../index.html#autotoc_md48',1,'']]],
['views_10',['Views',['../md_docs_2static_2usage.html#autotoc_md63',1,'2. Why These Engines and Views?'],['../engine_8h.html#AvailableViews',1,'Available Views'],['../index.html#autotoc_md34',1,'Engine Views']]],
['visualizing_20reaction_20networks_11',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md67',1,'']]],
['views_10',['Views',['../md_docs_2static_2usage.html#autotoc_md64',1,'2. Why These Engines and Views?'],['../engine_8h.html#AvailableViews',1,'Available Views'],['../index.html#autotoc_md34',1,'Engine Views']]],
['visualizing_20reaction_20networks_11',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md68',1,'']]],
['vs_20gcc_12',['Clang vs. GCC',['../index.html#autotoc_md24',1,'']]]
];

7
docs/html/search/all_1c.js
View File

@@ -3,10 +3,9 @@ var searchData=
['weak_0',['WEAK',['../namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8',1,'gridfire::screening']]],
['weakscreeningmodel_1',['WeakScreeningModel',['../classgridfire_1_1screening_1_1_weak_screening_model.html',1,'gridfire::screening']]],
['what_2',['what',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aac4899d001338688def2b809b55bb2ba',1,'gridfire::exceptions::StaleEngineTrigger::what()'],['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4',1,'gridfire::exceptions::StaleEngineError::what()'],['../classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#afe87ef508f5b20ca99ec70510747caff',1,'gridfire::exceptions::FailedToPartitionEngineError::what()'],['../classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1',1,'gridfire::exceptions::NetworkResizedError::what()'],['../classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69',1,'gridfire::exceptions::UnableToSetNetworkReactionsError::what()']]],
['why_20these_20engines_20and_20views_3',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md63',1,'']]],
['why_20these_20engines_20and_20views_3',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md64',1,'']]],
['workflow_4',['Design Philosophy and Workflow',['../index.html#autotoc_md1',1,'']]],
['workflow_20components_20and_20effects_5',['Workflow Components and Effects',['../index.html#autotoc_md51',1,'']]],
['workflow_20examople_6',['Common Workflow Examople',['../index.html#autotoc_md54',1,'']]],
['workflow_20example_7',['Common Workflow Example',['../index.html#autotoc_md50',1,'']]],
['workflow_20in_20directnetworksolver_8',['Algorithmic Workflow in DirectNetworkSolver',['../index.html#autotoc_md42',1,'']]]
['workflow_20example_6',['Workflow Example',['../index.html#autotoc_md50',1,'Common Workflow Example'],['../index.html#autotoc_md55',1,'Common Workflow Example']]],
['workflow_20in_20directnetworksolver_7',['Algorithmic Workflow in DirectNetworkSolver',['../index.html#autotoc_md42',1,'']]]
];

2
docs/html/search/all_2.js
View File

@@ -1,4 +1,4 @@
var searchData=
[
['3_20step_20by_20step_20example_0',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md65',1,'']]]
['3_20step_20by_20step_20example_0',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md66',1,'']]]
];

2
docs/html/search/all_3.js
View File

@@ -1,4 +1,4 @@
var searchData=
[
['4_20visualizing_20reaction_20networks_0',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md67',1,'']]]
['4_20visualizing_20reaction_20networks_0',['4. Visualizing Reaction Networks',['../md_docs_2static_2usage.html#autotoc_md68',1,'']]]
];

2
docs/html/search/all_4.js
View File

@@ -1,4 +1,4 @@
var searchData=
[
['5_20beyond_20the_20basics_0',['5. Beyond the Basics',['../md_docs_2static_2usage.html#autotoc_md69',1,'']]]
['5_20beyond_20the_20basics_0',['5. Beyond the Basics',['../md_docs_2static_2usage.html#autotoc_md70',1,'']]]
];

2
docs/html/search/all_6.js
View File

@@ -32,7 +32,7 @@ var searchData=
['and_20meson_20setup_29',['TUI config loading and meson setup',['../index.html#autotoc_md20',1,'']]],
['and_20netout_30',['NetIn and NetOut',['../index.html#autotoc_md38',1,'']]],
['and_20saving_31',['TUI config and saving',['../index.html#autotoc_md19',1,'']]],
['and_20views_32',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md63',1,'']]],
['and_20views_32',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md64',1,'']]],
['and_20workflow_33',['Design Philosophy and Workflow',['../index.html#autotoc_md1',1,'']]],
['approx8_34',['APPROX8',['../namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea',1,'gridfire']]],
['approx8net_35',['Approx8Net',['../structgridfire_1_1approx8_1_1_approx8_net.html',1,'gridfire::approx8']]],

6
docs/html/search/all_7.js
View File

@@ -6,9 +6,9 @@ var searchData=
['base_5fnetwork_5ftoo_5fshallow_3',['BASE_NETWORK_TOO_SHALLOW',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e',1,'gridfire']]],
['basepartitiontype_4',['BasePartitionType',['../namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728c',1,'gridfire::partition']]],
['basepartitiontypetostring_5',['basePartitionTypeToString',['../namespacegridfire_1_1partition.html#a97237521bc760f7521346f8db472dc8e',1,'gridfire::partition']]],
['basics_6',['5. Beyond the Basics',['../md_docs_2static_2usage.html#autotoc_md69',1,'']]],
['basics_6',['5. Beyond the Basics',['../md_docs_2static_2usage.html#autotoc_md70',1,'']]],
['begin_7',['begin',['../classgridfire_1_1reaction_1_1_logical_reaction.html#a4ae3806e5e1a802b86a6de292d043476',1,'gridfire::reaction::LogicalReaction::begin()'],['../classgridfire_1_1reaction_1_1_logical_reaction.html#a5d410de1053f8028faed1f0d0a6083f5',1,'gridfire::reaction::LogicalReaction::begin() const'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a87257704009fcd57b553f86cdaacb597',1,'gridfire::reaction::TemplatedReactionSet::begin()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#aee42bb25973dadc6629bdb5cb1db6369',1,'gridfire::reaction::TemplatedReactionSet::begin() const']]],
['beyond_20the_20basics_8',['5. Beyond the Basics',['../md_docs_2static_2usage.html#autotoc_md69',1,'']]],
['beyond_20the_20basics_8',['5. Beyond the Basics',['../md_docs_2static_2usage.html#autotoc_md70',1,'']]],
['bin_9',['bin',['../structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3',1,'gridfire::QSECacheKey']]],
['bindings_2ecpp_10',['bindings.cpp',['../bindings_8cpp.html',1,'(Global Namespace)'],['../engine_2bindings_8cpp.html',1,'(Global Namespace)'],['../exceptions_2bindings_8cpp.html',1,'(Global Namespace)'],['../expectations_2bindings_8cpp.html',1,'(Global Namespace)'],['../io_2bindings_8cpp.html',1,'(Global Namespace)'],['../partition_2bindings_8cpp.html',1,'(Global Namespace)'],['../reaction_2bindings_8cpp.html',1,'(Global Namespace)'],['../screening_2bindings_8cpp.html',1,'(Global Namespace)'],['../solver_2bindings_8cpp.html',1,'(Global Namespace)'],['../types_2bindings_8cpp.html',1,'(Global Namespace)'],['../utils_2bindings_8cpp.html',1,'(Global Namespace)']]],
['bindings_2eh_11',['bindings.h',['../engine_2bindings_8h.html',1,'(Global Namespace)'],['../exceptions_2bindings_8h.html',1,'(Global Namespace)'],['../expectations_2bindings_8h.html',1,'(Global Namespace)'],['../io_2bindings_8h.html',1,'(Global Namespace)'],['../partition_2bindings_8h.html',1,'(Global Namespace)'],['../reaction_2bindings_8h.html',1,'(Global Namespace)'],['../screening_2bindings_8h.html',1,'(Global Namespace)'],['../solver_2bindings_8h.html',1,'(Global Namespace)'],['../types_2bindings_8h.html',1,'(Global Namespace)'],['../utils_2bindings_8h.html',1,'(Global Namespace)']]],
@@ -23,5 +23,5 @@ var searchData=
['builddepthtype_20',['BuildDepthType',['../namespacegridfire.html#a3b1f70dc7ff5b501809330a97079e4f6',1,'gridfire']]],
['building_20the_20c_20library_21',['Building the C++ Library',['../index.html#autotoc_md23',1,'']]],
['building_2eh_22',['building.h',['../building_8h.html',1,'']]],
['by_20step_20example_23',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md65',1,'']]]
['by_20step_20example_23',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md66',1,'']]]
];

39
docs/html/search/all_8.js
View File

@@ -27,21 +27,21 @@ var searchData=
['calculaterhsandenergy_24',['CalculateRHSAndEnergy',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505aafefea58639f78d7c750970bbad28420',1,'gridfire::MultiscalePartitioningEngineView::CacheStats']]],
['calculaterhsandenergy_25',['calculateRHSAndEnergy',['../classgridfire_1_1_engine.html#a89f714d19b84a93a004a7afbb487a6cb',1,'gridfire::Engine::calculateRHSAndEnergy()'],['../classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081',1,'gridfire::GraphEngine::calculateRHSAndEnergy()'],['../classgridfire_1_1_adaptive_engine_view.html#af703ad17ea65ffff4b75bf8ccc00e5d5',1,'gridfire::AdaptiveEngineView::calculateRHSAndEnergy()'],['../classgridfire_1_1_defined_engine_view.html#a4b0d71367cb1d4c06bcd01251bbeb60d',1,'gridfire::DefinedEngineView::calculateRHSAndEnergy()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a716d7357e944e8394d8b8e0b5e7625eb',1,'gridfire::MultiscalePartitioningEngineView::calculateRHSAndEnergy()'],['../class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d',1,'PyEngine::calculateRHSAndEnergy()'],['../class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a',1,'PyDynamicEngine::calculateRHSAndEnergy()']]],
['calculatescreeningfactors_26',['calculateScreeningFactors',['../classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde',1,'gridfire::screening::ScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const =0'],['../classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22',1,'gridfire::screening::ScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< ADDouble > &Y, const ADDouble T9, const ADDouble rho) const =0'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60',1,'gridfire::screening::BareScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const override'],['../classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99',1,'gridfire::screening::BareScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< ADDouble > &Y, const ADDouble T9, const ADDouble rho) const override'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c',1,'gridfire::screening::WeakScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const override'],['../classgridfire_1_1screening_1_1_weak_screening_model.html#ac6bc78769670a460af1ff88284cb8ad4',1,'gridfire::screening::WeakScreeningModel::calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< CppAD::AD< double > > &Y, const CppAD::AD< double > T9, const CppAD::AD< double > rho) const override'],['../class_py_screening.html#a2b8756c197eb89e77cb6dd231c979315',1,'PyScreening::calculateScreeningFactors(const gridfire::reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const override'],['../class_py_screening.html#a5539d59311c778cf7f0006acc8f84ade',1,'PyScreening::calculateScreeningFactors(const gridfire::reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< ADDouble > &Y, const ADDouble T9, const ADDouble rho) const override']]],
['callback_20example_27',['Callback Example',['../index.html#autotoc_md52',1,'']]],
['callbacks_28',['Python callbacks',['../index.html#autotoc_md55',1,'']]],
['chapter_29',['chapter',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc',1,'gridfire::reaclib::ReactionRecord::chapter'],['../classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629',1,'gridfire::reaction::Reaction::chapter()'],['../classgridfire_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629',1,'gridfire::Reaction::chapter()']]],
['clang_20vs_20gcc_30',['Clang vs. GCC',['../index.html#autotoc_md24',1,'']]],
['clear_31',['clear',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a05f71d318564d880079fd6c96d59ae21',1,'gridfire::reaction::TemplatedReactionSet']]],
['cli_20config_20loading_20setup_20and_20build_32',['CLI config loading, setup, and build',['../index.html#autotoc_md21',1,'']]],
['clone_33',['clone',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a',1,'gridfire::partition::CompositePartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d',1,'gridfire::partition::PartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4',1,'gridfire::partition::GroundStatePartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6',1,'gridfire::partition::RauscherThielemannPartitionFunction::clone()'],['../class_py_partition_function.html#af918b357e38fb82499ad53584557c43d',1,'PyPartitionFunction::clone()']]],
['code_20architecture_20and_20logical_20flow_34',['Code Architecture and Logical Flow',['../index.html#autotoc_md27',1,'']]],
['coeffs_35',['coeffs',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0',1,'gridfire::reaclib::ReactionRecord']]],
['collect_36',['collect',['../classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e',1,'gridfire::DefinedEngineView']]],
['collectatomicreverserateatomicbases_37',['collectAtomicReverseRateAtomicBases',['../classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746',1,'gridfire::GraphEngine']]],
['collectnetworkspecies_38',['collectNetworkSpecies',['../classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa',1,'gridfire::GraphEngine']]],
['common_20platforms_39',['Dependency Installation on Common Platforms',['../index.html#autotoc_md22',1,'']]],
['common_20workflow_20examople_40',['Common Workflow Examople',['../index.html#autotoc_md54',1,'']]],
['common_20workflow_20example_41',['Common Workflow Example',['../index.html#autotoc_md50',1,'']]],
['callback_20context_27',['Callback Context',['../index.html#autotoc_md53',1,'']]],
['callback_20example_28',['Callback Example',['../index.html#autotoc_md52',1,'']]],
['callbacks_29',['Python callbacks',['../index.html#autotoc_md56',1,'']]],
['chapter_30',['chapter',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc',1,'gridfire::reaclib::ReactionRecord::chapter'],['../classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629',1,'gridfire::reaction::Reaction::chapter()'],['../classgridfire_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629',1,'gridfire::Reaction::chapter()']]],
['clang_20vs_20gcc_31',['Clang vs. GCC',['../index.html#autotoc_md24',1,'']]],
['clear_32',['clear',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a05f71d318564d880079fd6c96d59ae21',1,'gridfire::reaction::TemplatedReactionSet']]],
['cli_20config_20loading_20setup_20and_20build_33',['CLI config loading, setup, and build',['../index.html#autotoc_md21',1,'']]],
['clone_34',['clone',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a',1,'gridfire::partition::CompositePartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d',1,'gridfire::partition::PartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4',1,'gridfire::partition::GroundStatePartitionFunction::clone()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6',1,'gridfire::partition::RauscherThielemannPartitionFunction::clone()'],['../class_py_partition_function.html#af918b357e38fb82499ad53584557c43d',1,'PyPartitionFunction::clone()']]],
['code_20architecture_20and_20logical_20flow_35',['Code Architecture and Logical Flow',['../index.html#autotoc_md27',1,'']]],
['coeffs_36',['coeffs',['../structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0',1,'gridfire::reaclib::ReactionRecord']]],
['collect_37',['collect',['../classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e',1,'gridfire::DefinedEngineView']]],
['collectatomicreverserateatomicbases_38',['collectAtomicReverseRateAtomicBases',['../classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746',1,'gridfire::GraphEngine']]],
['collectnetworkspecies_39',['collectNetworkSpecies',['../classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa',1,'gridfire::GraphEngine']]],
['common_20platforms_40',['Dependency Installation on Common Platforms',['../index.html#autotoc_md22',1,'']]],
['common_20workflow_20example_41',['Common Workflow Example',['../index.html#autotoc_md50',1,'Common Workflow Example'],['../index.html#autotoc_md55',1,'Common Workflow Example']]],
['compiler_20versions_42',['Minimum compiler versions',['../index.html#autotoc_md26',1,'']]],
['components_20and_20effects_43',['Workflow Components and Effects',['../index.html#autotoc_md51',1,'']]],
['composability_44',['A Note about composability',['../index.html#autotoc_md35',1,'']]],
@@ -67,8 +67,9 @@ var searchData=
['contains_5fproduct_64',['contains_product',['../classgridfire_1_1reaction_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2',1,'gridfire::reaction::Reaction::contains_product()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#a443ec5d7138764b32975232e13071ccf',1,'gridfire::reaction::TemplatedReactionSet::contains_product()'],['../classgridfire_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2',1,'gridfire::Reaction::contains_product()']]],
['contains_5freactant_65',['contains_reactant',['../classgridfire_1_1reaction_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45',1,'gridfire::reaction::Reaction::contains_reactant()'],['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac42606350d7557106f7954b1f114c128',1,'gridfire::reaction::TemplatedReactionSet::contains_reactant()'],['../classgridfire_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45',1,'gridfire::Reaction::contains_reactant()']]],
['contains_5fspecies_66',['contains_species',['../classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad870856d206d93f27125c88d44ff9e34',1,'gridfire::reaction::TemplatedReactionSet']]],
['convert_5fnetin_67',['convert_netIn',['../classgridfire_1_1approx8_1_1_approx8_network.html#a56426da6f1af7eb8a6d1cc70bc8e742a',1,'gridfire::approx8::Approx8Network']]],
['culling_68',['culling',['../structgridfire_1_1_net_in.html#a6a5e909b46094ffa20da9a3da906e43f',1,'gridfire::NetIn']]],
['cullreactionsbyflow_69',['cullReactionsByFlow',['../classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08',1,'gridfire::AdaptiveEngineView']]],
['currently_20known_20good_20platforms_70',['Currently known good platforms',['../index.html#autotoc_md10',1,'']]]
['context_67',['Callback Context',['../index.html#autotoc_md53',1,'']]],
['convert_5fnetin_68',['convert_netIn',['../classgridfire_1_1approx8_1_1_approx8_network.html#a56426da6f1af7eb8a6d1cc70bc8e742a',1,'gridfire::approx8::Approx8Network']]],
['culling_69',['culling',['../structgridfire_1_1_net_in.html#a6a5e909b46094ffa20da9a3da906e43f',1,'gridfire::NetIn']]],
['cullreactionsbyflow_70',['cullReactionsByFlow',['../classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08',1,'gridfire::AdaptiveEngineView']]],
['currently_20known_20good_20platforms_71',['Currently, known good platforms',['../index.html#autotoc_md10',1,'']]]
];

2
docs/html/search/all_9.js
View File

@@ -10,7 +10,7 @@ var searchData=
['design_7',['Engine Design',['../engine_8h.html#EngineDesign',1,'']]],
['design_20philosophy_20and_20workflow_8',['Design Philosophy and Workflow',['../index.html#autotoc_md1',1,'']]],
['developers_9',['source for developers',['../index.html#autotoc_md7',1,'']]],
['development_20from_20source_10',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md61',1,'']]],
['development_20from_20source_10',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md62',1,'']]],
['df_11',['df',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#aa65aec7175a56a31887b8b8fca5434bc',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
['directnetworksolver_12',['DirectNetworkSolver',['../index.html#autotoc_md42',1,'Algorithmic Workflow in DirectNetworkSolver'],['../classgridfire_1_1solver_1_1_direct_network_solver.html',1,'gridfire::solver::DirectNetworkSolver']]],
['directnetworksolver_20implicit_20rosenbrock_20method_13',['DirectNetworkSolver (Implicit Rosenbrock Method)',['../index.html#autotoc_md41',1,'']]],

21
docs/html/search/all_a.js
View File

@@ -32,7 +32,7 @@ var searchData=
['engineerrortypes_29',['EngineErrorTypes',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87c',1,'gridfire::expectations']]],
['engineindexerror_30',['EngineIndexError',['../structgridfire_1_1expectations_1_1_engine_index_error.html',1,'gridfire::expectations::EngineIndexError'],['../structgridfire_1_1expectations_1_1_engine_index_error.html#ab44bba2a197d43319e65cd200cd347b0',1,'gridfire::expectations::EngineIndexError::EngineIndexError()']]],
['engines_31',['Engines',['../engine_8h.html#AvailableEngines',1,'Available Engines'],['../index.html#autotoc_md28',1,'Engines']]],
['engines_20and_20views_32',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md63',1,'']]],
['engines_20and_20views_32',['2. Why These Engines and Views?',['../md_docs_2static_2usage.html#autotoc_md64',1,'']]],
['enginet_20gt_20_3a_33',['NetworkSolverStrategy<EngineT>:',['../index.html#autotoc_md37',1,'']]],
['enginetype_34',['EngineType',['../conceptgridfire_1_1_engine_type.html',1,'gridfire']]],
['engineview_35',['EngineView',['../classgridfire_1_1_engine_view.html',1,'gridfire']]],
@@ -43,14 +43,13 @@ var searchData=
['error_5fengine_2eh_40',['error_engine.h',['../error__engine_8h.html',1,'']]],
['evaluate_41',['evaluate',['../classgridfire_1_1approx8_1_1_approx8_network.html#a888734a3cdde4259e921e2efece411ee',1,'gridfire::approx8::Approx8Network::evaluate()'],['../classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c',1,'gridfire::Network::evaluate()'],['../classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b',1,'gridfire::partition::CompositePartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_partition_function.html#a08ee79b7d8723b4e00ee1fc9cdfbe817',1,'gridfire::partition::PartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#af16da0015489307eb64639efbafbbdd5',1,'gridfire::partition::GroundStatePartitionFunction::evaluate()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aebe49d06b50a18ea4484ff15cb301681',1,'gridfire::partition::RauscherThielemannPartitionFunction::evaluate()'],['../classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f',1,'gridfire::solver::NetworkSolverStrategy::evaluate()'],['../classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a',1,'gridfire::solver::DirectNetworkSolver::evaluate()'],['../class_py_partition_function.html#a83aca0bc261734b7d3df8269f730c69b',1,'PyPartitionFunction::evaluate()'],['../class_py_dynamic_network_solver_strategy.html#a2095abb83ed6229ebb27b4883cec51c4',1,'PyDynamicNetworkSolverStrategy::evaluate()']]],
['evaluatederivative_42',['evaluateDerivative',['../classgridfire_1_1partition_1_1_composite_partition_function.html#ac8900afaa5edd24fcb8eaf19e7379183',1,'gridfire::partition::CompositePartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_partition_function.html#a14009bdaca47f3eddf2c6c023845db5a',1,'gridfire::partition::PartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a0eff10c7b134d9d4081ad72bbc785c5b',1,'gridfire::partition::GroundStatePartitionFunction::evaluateDerivative()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#aaa1e11579b44a88c5f18943cc303c4b4',1,'gridfire::partition::RauscherThielemannPartitionFunction::evaluateDerivative()'],['../class_py_partition_function.html#a260df9689bf698970ebf5104977a3dcf',1,'PyPartitionFunction::evaluateDerivative()']]],
['examople_43',['Common Workflow Examople',['../index.html#autotoc_md54',1,'']]],
['example_44',['Example',['../md_docs_2static_2usage.html#autotoc_md65',1,'3. Step-by-Step Example'],['../engine_8h.html#AdaptiveEngineViewExample',1,'AdaptiveEngineView Example'],['../index.html#autotoc_md52',1,'Callback Example'],['../index.html#autotoc_md50',1,'Common Workflow Example'],['../engine_8h.html#DefinedEngineViewExample',1,'DefinedEngineView Example'],['../engine_8h.html#GraphEngineExample',1,'GraphEngine Example'],['../engine_8h.html#MultiscalePartitioningEngineViewExample',1,'MultiscalePartitioningEngineView Example'],['../engine_8h.html#NetworkPrimingEngineViewExample',1,'NetworkPrimingEngineView Example']]],
['examples_45',['Examples',['../index.html#autotoc_md18',1,'Examples'],['../engine_8h.html#UsageExamples',1,'Usage Examples'],['../index.html#autotoc_md45',1,'Usage Examples']]],
['exceptions_2eh_46',['exceptions.h',['../exceptions_8h.html',1,'']]],
['excess_5fenergy_47',['excess_energy',['../classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5',1,'gridfire::reaction::Reaction::excess_energy()'],['../classgridfire_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5',1,'gridfire::Reaction::excess_energy()']]],
['expectations_2eh_48',['expectations.h',['../expectations_8h.html',1,'']]],
['expected_5fengine_2eh_49',['expected_engine.h',['../expected__engine_8h.html',1,'']]],
['exporttocsv_50',['exportToCSV',['../classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95',1,'gridfire::GraphEngine']]],
['exporttodot_51',['exportToDot',['../classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929',1,'gridfire::GraphEngine::exportToDot()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18',1,'gridfire::MultiscalePartitioningEngineView::exportToDot()']]],
['extensibility_52',['Python Extensibility',['../index.html#autotoc_md44',1,'']]]
['example_43',['Example',['../md_docs_2static_2usage.html#autotoc_md66',1,'3. Step-by-Step Example'],['../engine_8h.html#AdaptiveEngineViewExample',1,'AdaptiveEngineView Example'],['../index.html#autotoc_md52',1,'Callback Example'],['../index.html#autotoc_md50',1,'Common Workflow Example'],['../index.html#autotoc_md55',1,'Common Workflow Example'],['../engine_8h.html#DefinedEngineViewExample',1,'DefinedEngineView Example'],['../engine_8h.html#GraphEngineExample',1,'GraphEngine Example'],['../engine_8h.html#MultiscalePartitioningEngineViewExample',1,'MultiscalePartitioningEngineView Example'],['../engine_8h.html#NetworkPrimingEngineViewExample',1,'NetworkPrimingEngineView Example']]],
['examples_44',['Examples',['../index.html#autotoc_md18',1,'Examples'],['../engine_8h.html#UsageExamples',1,'Usage Examples'],['../index.html#autotoc_md45',1,'Usage Examples']]],
['exceptions_2eh_45',['exceptions.h',['../exceptions_8h.html',1,'']]],
['excess_5fenergy_46',['excess_energy',['../classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5',1,'gridfire::reaction::Reaction::excess_energy()'],['../classgridfire_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5',1,'gridfire::Reaction::excess_energy()']]],
['expectations_2eh_47',['expectations.h',['../expectations_8h.html',1,'']]],
['expected_5fengine_2eh_48',['expected_engine.h',['../expected__engine_8h.html',1,'']]],
['exporttocsv_49',['exportToCSV',['../classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95',1,'gridfire::GraphEngine']]],
['exporttodot_50',['exportToDot',['../classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929',1,'gridfire::GraphEngine::exportToDot()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18',1,'gridfire::MultiscalePartitioningEngineView::exportToDot()']]],
['extensibility_51',['Python Extensibility',['../index.html#autotoc_md44',1,'']]]
];

2
docs/html/search/all_b.js
View File

@@ -19,7 +19,7 @@ var searchData=
['formatstringlookup_16',['FormatStringLookup',['../namespacegridfire.html#a4e9cabad30b57d636c2f0d73d8cc6bb4',1,'gridfire']]],
['forward_17',['forward',['../classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0',1,'gridfire::GraphEngine::AtomicReverseRate']]],
['fourthorder_18',['FourthOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a100e3bf0197221c19b222badf42aa964',1,'gridfire']]],
['from_20source_19',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md61',1,'']]],
['from_20source_19',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md62',1,'']]],
['front_20',['FRONT',['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71',1,'gridfire::partition::RauscherThielemannPartitionFunction']]],
['full_21',['Full',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75',1,'gridfire']]],
['full_5fsuccess_22',['FULL_SUCCESS',['../namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a',1,'gridfire']]],

2
docs/html/search/all_c.js
View File

@@ -31,7 +31,7 @@ var searchData=
['getspeciestimescales_28',['getSpeciesTimescales',['../classgridfire_1_1_dynamic_engine.html#a6772ac384b4c3d3e91712041e4aaa813',1,'gridfire::DynamicEngine::getSpeciesTimescales()'],['../classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581',1,'gridfire::GraphEngine::getSpeciesTimescales()'],['../classgridfire_1_1_adaptive_engine_view.html#a4e856d6d4d2fc220952bbb7e6b2f85d9',1,'gridfire::AdaptiveEngineView::getSpeciesTimescales()'],['../classgridfire_1_1_defined_engine_view.html#ac8daafabbc76f4b6811bede241a03d72',1,'gridfire::DefinedEngineView::getSpeciesTimescales()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a560612347bbd5b7b380e990624d01105',1,'gridfire::MultiscalePartitioningEngineView::getSpeciesTimescales()'],['../class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22',1,'PyDynamicEngine::getSpeciesTimescales()']]],
['getstate_29',['getState',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5',1,'gridfire::exceptions::StaleEngineTrigger']]],
['getstoichiometrymatrixentry_30',['getStoichiometryMatrixEntry',['../classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f',1,'gridfire::DynamicEngine::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152',1,'gridfire::GraphEngine::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9',1,'gridfire::AdaptiveEngineView::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_defined_engine_view.html#afa2820971397114d788730cc33feefe2',1,'gridfire::DefinedEngineView::getStoichiometryMatrixEntry()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#a510b920dea726aef859ac1f6d051807e',1,'gridfire::MultiscalePartitioningEngineView::getStoichiometryMatrixEntry()'],['../class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83',1,'PyDynamicEngine::getStoichiometryMatrixEntry()']]],
['good_20platforms_31',['Currently known good platforms',['../index.html#autotoc_md10',1,'']]],
['good_20platforms_31',['Currently, known good platforms',['../index.html#autotoc_md10',1,'']]],
['graphengine_32',['GraphEngine',['../classgridfire_1_1_graph_engine.html',1,'gridfire::GraphEngine'],['../classgridfire_1_1_graph_engine.html#afad967546b611d9c005268760feb75d5',1,'gridfire::GraphEngine::GraphEngine(const fourdst::composition::Composition &composition, const BuildDepthType=NetworkBuildDepth::Full)'],['../classgridfire_1_1_graph_engine.html#a39d9838ed40bea71ee6c552bb5969026',1,'gridfire::GraphEngine::GraphEngine(const fourdst::composition::Composition &composition, const partition::PartitionFunction &partitionFunction, const BuildDepthType buildDepth=NetworkBuildDepth::Full)'],['../classgridfire_1_1_graph_engine.html#a1e7e851dfa21d41c2dc533ba56fc4c7b',1,'gridfire::GraphEngine::GraphEngine(const reaction::LogicalReactionSet &reactions)'],['../index.html#autotoc_md29',1,'GraphEngine']]],
['graphengine_20configuration_20options_33',['GraphEngine Configuration Options',['../index.html#autotoc_md30',1,'']]],
['graphengine_20example_34',['GraphEngine Example',['../engine_8h.html#GraphEngineExample',1,'']]],

2
docs/html/search/all_e.js
View File

@@ -23,7 +23,7 @@ var searchData=
['inputsatcompiletime_20',['InputsAtCompileTime',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a5a2ecfa4d17720d1da14e53f4c261a81a753b594931f9ee122e2079986ad572c9',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
['inputtype_21',['InputType',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html#a3ebf684b36e98da38d8ee6f0be4f91e2',1,'gridfire::MultiscalePartitioningEngineView::EigenFunctor']]],
['install_20scripts_22',['Install Scripts',['../index.html#autotoc_md15',1,'']]],
['installation_23',['Installation',['../md_docs_2static_2usage.html#autotoc_md59',1,'1. Installation'],['../index.html#autotoc_md8',1,'Automatic Build and Installation'],['../index.html#autotoc_md16',1,'Ease of Installation']]],
['installation_23',['Installation',['../md_docs_2static_2usage.html#autotoc_md60',1,'1. Installation'],['../index.html#autotoc_md8',1,'Automatic Build and Installation'],['../index.html#autotoc_md16',1,'Ease of Installation']]],
['installation_24',['Python installation',['../index.html#autotoc_md4',1,'']]],
['installation_20instructions_25',['Script Build and Installation Instructions',['../index.html#autotoc_md9',1,'']]],
['installation_20on_20common_20platforms_26',['Dependency Installation on Common Platforms',['../index.html#autotoc_md22',1,'']]],