fix(gf_get_compiler_flags): fixed bug in getting gridfire compiler flags

also added command line utilities and rebuilt docs

docs/html/classgridfire_1_1engine_1_1_dynamic_engine.html

@@ -29,7 +29,7 @@
  <tbody>
  <tr id="projectrow">
   <td id="projectalign">
-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.6rc4.0</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v1.0.2</span>
    </div>
    <div id="projectbrief">General Purpose Nuclear Network</div>
   </td>
@@ -1006,7 +1006,7 @@ These methods return an unfinalized composition which must then be finalized by
 <p>This method is intended to be implemented by derived classes to update their internal state based on the provided network conditions. For example, an adaptive engine might use this to re-evaluate which reactions and species are active. For other engines that do not support manually updating, this method might do nothing.</p>
 <dl class="section user"><dt>Usage Example:</dt><dd><div class="fragment"><div class="line"><a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a> input = { ... };</div>
 <div class="line">myEngine.update(input);</div>
-<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> types.h:27</div></div>
+<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> types.h:28</div></div>
 </div><!-- fragment --></dd></dl>
 <dl class="section post"><dt>Postcondition</dt><dd>The internal state of the engine is updated to reflect the new conditions. </dd></dl>